Query 048733
Match_columns 887
No_of_seqs 493 out of 3972
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 12:32:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.3E-88 9.4E-93 787.8 49.7 792 3-866 2-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.3E-57 2.8E-62 563.7 41.0 608 168-868 181-837 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-43 2.7E-48 377.5 16.0 284 176-482 1-285 (287)
4 KOG0444 Cytoskeletal regulator 99.8 5.2E-23 1.1E-27 217.1 -4.5 301 548-871 53-377 (1255)
5 PLN00113 leucine-rich repeat r 99.8 6.7E-21 1.4E-25 237.5 12.4 299 550-867 118-463 (968)
6 PLN00113 leucine-rich repeat r 99.8 2.3E-20 4.9E-25 232.8 13.2 298 550-867 69-391 (968)
7 KOG0444 Cytoskeletal regulator 99.8 1.4E-22 3.1E-27 213.8 -8.5 296 550-867 32-350 (1255)
8 KOG4194 Membrane glycoprotein 99.7 1.5E-18 3.2E-23 183.0 6.1 276 571-867 77-427 (873)
9 KOG4194 Membrane glycoprotein 99.7 3.1E-18 6.8E-23 180.5 2.3 303 551-864 103-447 (873)
10 PLN03210 Resistant to P. syrin 99.7 1.2E-16 2.6E-21 199.2 13.2 273 572-869 589-906 (1153)
11 KOG0472 Leucine-rich repeat pr 99.6 3.8E-18 8.3E-23 172.2 -6.0 255 591-867 199-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 3.3E-17 7.1E-22 165.6 -8.7 244 591-867 61-308 (565)
13 KOG0618 Serine/threonine phosp 99.5 3.4E-16 7.3E-21 174.4 -6.2 99 766-868 384-488 (1081)
14 PRK04841 transcriptional regul 99.5 6.1E-12 1.3E-16 156.5 29.2 306 172-533 15-333 (903)
15 PRK00411 cdc6 cell division co 99.4 2.2E-10 4.8E-15 127.6 29.4 318 169-521 28-374 (394)
16 PRK15387 E3 ubiquitin-protein 99.4 9.8E-13 2.1E-17 152.2 9.4 234 572-867 222-456 (788)
17 KOG0618 Serine/threonine phosp 99.4 9.2E-14 2E-18 155.3 -0.6 201 571-803 44-280 (1081)
18 PRK15370 E3 ubiquitin-protein 99.3 9.4E-13 2E-17 153.4 4.6 243 574-868 180-427 (754)
19 KOG0617 Ras suppressor protein 99.3 8.3E-14 1.8E-18 124.8 -3.9 131 595-750 30-161 (264)
20 PRK15387 E3 ubiquitin-protein 99.3 1.4E-11 3.1E-16 142.6 10.2 243 550-852 222-465 (788)
21 TIGR02928 orc1/cdc6 family rep 99.2 4.4E-09 9.5E-14 116.0 28.3 308 170-509 14-352 (365)
22 COG2909 MalT ATP-dependent tra 99.2 6E-10 1.3E-14 125.1 19.4 306 181-535 25-341 (894)
23 KOG4658 Apoptotic ATPase [Sign 99.2 1.7E-11 3.7E-16 145.2 6.2 253 567-846 518-784 (889)
24 PRK15370 E3 ubiquitin-protein 99.2 2.8E-11 6.2E-16 141.2 6.8 224 572-844 199-427 (754)
25 TIGR03015 pepcterm_ATPase puta 99.2 5.3E-09 1.1E-13 110.0 23.4 183 194-403 43-242 (269)
26 PF01637 Arch_ATPase: Archaeal 99.1 4.2E-10 9.2E-15 115.8 12.1 207 173-398 1-233 (234)
27 cd00116 LRR_RI Leucine-rich re 99.1 7.2E-12 1.6E-16 135.8 -1.5 258 592-867 17-318 (319)
28 KOG0617 Ras suppressor protein 99.1 4E-12 8.6E-17 114.2 -5.4 154 569-749 30-183 (264)
29 COG3899 Predicted ATPase [Gene 99.0 3.5E-09 7.6E-14 126.4 17.0 334 172-531 1-385 (849)
30 PRK00080 ruvB Holliday junctio 99.0 9E-09 1.9E-13 110.9 18.2 283 170-508 24-311 (328)
31 cd00116 LRR_RI Leucine-rich re 99.0 4.6E-11 1E-15 129.4 0.3 256 602-869 2-291 (319)
32 TIGR00635 ruvB Holliday juncti 99.0 6.8E-09 1.5E-13 111.2 15.9 282 171-508 4-290 (305)
33 KOG4237 Extracellular matrix p 99.0 4.7E-11 1E-15 121.6 -0.8 87 782-871 269-359 (498)
34 PF05729 NACHT: NACHT domain 99.0 3.9E-09 8.4E-14 102.1 12.6 144 195-365 1-163 (166)
35 PTZ00112 origin recognition co 98.9 4.7E-07 1E-11 103.0 24.1 306 170-508 754-1087(1164)
36 COG2256 MGS1 ATPase related to 98.8 1.5E-07 3.3E-12 97.5 17.6 225 170-446 29-265 (436)
37 KOG4341 F-box protein containi 98.8 3.6E-10 7.7E-15 116.3 -3.0 278 573-871 139-441 (483)
38 KOG4237 Extracellular matrix p 98.7 1E-09 2.2E-14 112.0 -1.5 80 573-661 68-149 (498)
39 KOG2120 SCF ubiquitin ligase, 98.7 9.8E-10 2.1E-14 107.9 -2.3 173 683-859 207-390 (419)
40 PRK13342 recombination factor 98.7 1.7E-07 3.7E-12 104.1 14.8 178 171-400 12-197 (413)
41 KOG3207 Beta-tubulin folding c 98.7 4.3E-09 9.3E-14 109.1 0.3 228 595-867 118-365 (505)
42 PRK06893 DNA replication initi 98.7 3.2E-07 6.9E-12 93.1 13.6 149 194-398 39-202 (229)
43 KOG3207 Beta-tubulin folding c 98.6 9.9E-09 2.1E-13 106.5 1.6 204 568-818 117-336 (505)
44 PRK05564 DNA polymerase III su 98.6 1.6E-06 3.6E-11 92.7 18.5 180 171-399 4-190 (313)
45 PTZ00202 tuzin; Provisional 98.6 7E-06 1.5E-10 86.9 21.6 167 167-365 258-434 (550)
46 PF13173 AAA_14: AAA domain 98.5 3.3E-07 7.2E-12 83.8 9.2 123 194-357 2-127 (128)
47 PRK04195 replication factor C 98.5 7.4E-06 1.6E-10 93.0 21.5 245 171-481 14-271 (482)
48 PRK07003 DNA polymerase III su 98.5 2.3E-06 5E-11 97.2 16.7 198 171-398 16-220 (830)
49 PRK14961 DNA polymerase III su 98.5 4.3E-06 9.3E-11 91.2 18.2 193 171-395 16-216 (363)
50 KOG2028 ATPase related to the 98.5 1.6E-06 3.4E-11 88.1 13.1 158 193-393 161-330 (554)
51 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.5E-06 3.3E-11 88.6 13.5 170 176-400 22-202 (226)
52 KOG1259 Nischarin, modulator o 98.5 1.9E-08 4.1E-13 99.0 -0.7 134 709-850 279-416 (490)
53 PRK12402 replication factor C 98.5 2.5E-06 5.3E-11 93.1 15.4 201 171-397 15-224 (337)
54 PF13191 AAA_16: AAA ATPase do 98.5 1.7E-07 3.8E-12 92.3 5.7 50 172-221 1-51 (185)
55 PRK14949 DNA polymerase III su 98.5 5.2E-06 1.1E-10 96.4 18.3 180 171-397 16-218 (944)
56 KOG4341 F-box protein containi 98.5 6.8E-09 1.5E-13 107.1 -4.6 280 569-864 161-460 (483)
57 PRK14960 DNA polymerase III su 98.5 5.2E-06 1.1E-10 93.4 17.6 196 171-397 15-217 (702)
58 PRK12323 DNA polymerase III su 98.4 6E-06 1.3E-10 92.7 17.3 202 171-398 16-224 (700)
59 PF13401 AAA_22: AAA domain; P 98.4 7.7E-07 1.7E-11 82.1 8.7 115 194-331 4-125 (131)
60 PRK07940 DNA polymerase III su 98.4 1.4E-05 3E-10 87.1 17.9 194 171-400 5-214 (394)
61 PRK06645 DNA polymerase III su 98.4 1.1E-05 2.3E-10 90.4 17.4 197 171-395 21-225 (507)
62 PRK13341 recombination factor 98.4 5.5E-06 1.2E-10 96.8 15.4 171 171-393 28-211 (725)
63 PRK14963 DNA polymerase III su 98.4 8.2E-06 1.8E-10 91.8 16.2 193 171-396 14-214 (504)
64 PRK14957 DNA polymerase III su 98.4 1.1E-05 2.5E-10 90.8 17.1 182 171-399 16-221 (546)
65 PF05496 RuvB_N: Holliday junc 98.4 3.7E-06 8E-11 81.7 11.3 174 171-400 24-222 (233)
66 PLN03025 replication factor C 98.3 8.5E-06 1.8E-10 87.5 15.4 179 171-394 13-195 (319)
67 PRK07471 DNA polymerase III su 98.3 1.9E-05 4.2E-10 85.2 18.0 209 170-400 18-239 (365)
68 PRK14956 DNA polymerase III su 98.3 1.2E-05 2.6E-10 88.1 16.4 193 171-394 18-217 (484)
69 PRK08691 DNA polymerase III su 98.3 1.4E-05 3E-10 91.1 17.0 196 171-397 16-218 (709)
70 KOG1909 Ran GTPase-activating 98.3 8.7E-08 1.9E-12 97.0 -0.9 247 568-844 26-310 (382)
71 COG1474 CDC6 Cdc6-related prot 98.3 3.2E-05 7E-10 83.3 18.5 198 171-391 17-229 (366)
72 PRK00440 rfc replication facto 98.3 2E-05 4.4E-10 85.1 17.3 178 171-395 17-199 (319)
73 PRK07994 DNA polymerase III su 98.3 1.9E-05 4E-10 90.5 17.3 197 171-398 16-219 (647)
74 cd00009 AAA The AAA+ (ATPases 98.3 6.2E-06 1.3E-10 77.7 11.1 57 174-234 1-57 (151)
75 cd01128 rho_factor Transcripti 98.3 1.9E-06 4.1E-11 87.5 7.7 53 194-247 16-70 (249)
76 PRK09112 DNA polymerase III su 98.3 5.1E-05 1.1E-09 81.5 18.8 210 169-400 21-241 (351)
77 PRK14951 DNA polymerase III su 98.3 2.9E-05 6.2E-10 88.8 17.7 199 171-397 16-223 (618)
78 PRK14962 DNA polymerase III su 98.3 2.9E-05 6.3E-10 86.7 17.2 201 171-403 14-223 (472)
79 PRK14964 DNA polymerase III su 98.2 2.7E-05 5.8E-10 86.5 16.7 179 171-395 13-213 (491)
80 TIGR00678 holB DNA polymerase 98.2 5.4E-05 1.2E-09 74.6 17.3 90 293-395 95-187 (188)
81 KOG0532 Leucine-rich repeat (L 98.2 5.5E-08 1.2E-12 104.1 -4.3 157 595-805 95-252 (722)
82 PRK14958 DNA polymerase III su 98.2 3.2E-05 7E-10 87.3 17.5 195 171-396 16-217 (509)
83 COG3903 Predicted ATPase [Gene 98.2 1.3E-06 2.9E-11 91.4 5.6 293 194-532 14-314 (414)
84 TIGR01242 26Sp45 26S proteasom 98.2 1.3E-05 2.8E-10 87.8 13.4 179 168-393 119-328 (364)
85 TIGR02397 dnaX_nterm DNA polym 98.2 6.4E-05 1.4E-09 82.6 18.9 180 171-398 14-217 (355)
86 PRK09087 hypothetical protein; 98.2 6.5E-05 1.4E-09 75.7 17.2 92 297-398 90-194 (226)
87 PRK14969 DNA polymerase III su 98.2 4.8E-05 1E-09 86.6 18.0 193 171-394 16-215 (527)
88 KOG2120 SCF ubiquitin ligase, 98.2 1.2E-07 2.5E-12 93.6 -2.9 174 687-867 186-374 (419)
89 PRK08727 hypothetical protein; 98.2 3.6E-05 7.8E-10 78.3 14.9 146 195-396 42-201 (233)
90 PRK05896 DNA polymerase III su 98.2 4.8E-05 1E-09 85.9 17.0 200 171-401 16-223 (605)
91 KOG1259 Nischarin, modulator o 98.2 4.5E-07 9.7E-12 89.5 0.8 30 633-662 288-317 (490)
92 PRK09376 rho transcription ter 98.2 2.5E-06 5.3E-11 90.1 6.3 64 181-246 157-222 (416)
93 PF05621 TniB: Bacterial TniB 98.2 9.4E-05 2E-09 75.6 17.4 194 178-394 44-256 (302)
94 TIGR02903 spore_lon_C ATP-depe 98.1 2.9E-05 6.4E-10 90.1 14.8 190 171-366 154-367 (615)
95 PRK14955 DNA polymerase III su 98.1 6.1E-05 1.3E-09 83.3 16.3 201 171-396 16-225 (397)
96 PRK08084 DNA replication initi 98.1 5.3E-05 1.2E-09 77.2 14.6 148 194-397 45-207 (235)
97 COG4886 Leucine-rich repeat (L 98.1 2E-06 4.3E-11 96.0 4.2 177 594-822 112-291 (394)
98 PHA02544 44 clamp loader, smal 98.1 0.0002 4.3E-09 77.2 19.6 147 171-363 21-171 (316)
99 PRK08903 DnaA regulatory inact 98.1 3.9E-05 8.4E-10 78.2 13.4 173 174-403 22-203 (227)
100 KOG0532 Leucine-rich repeat (L 98.1 1.5E-07 3.3E-12 100.9 -4.4 152 570-752 96-247 (722)
101 PF14580 LRR_9: Leucine-rich r 98.1 3.2E-06 6.9E-11 80.5 4.9 83 568-662 15-98 (175)
102 PRK09111 DNA polymerase III su 98.1 8.9E-05 1.9E-09 85.1 17.2 198 171-397 24-231 (598)
103 KOG1909 Ran GTPase-activating 98.1 1.4E-06 3E-11 88.4 2.0 232 550-799 30-310 (382)
104 PF14516 AAA_35: AAA-like doma 98.1 0.00075 1.6E-08 72.6 23.0 214 170-409 10-249 (331)
105 PRK07764 DNA polymerase III su 98.1 0.00011 2.3E-09 87.4 17.7 194 171-394 15-216 (824)
106 PF00308 Bac_DnaA: Bacterial d 98.1 0.00013 2.8E-09 73.3 15.7 178 173-395 11-204 (219)
107 PRK14087 dnaA chromosomal repl 98.0 0.00044 9.5E-09 77.3 21.3 166 194-400 141-320 (450)
108 TIGR02880 cbbX_cfxQ probable R 98.0 0.0002 4.3E-09 75.1 17.4 158 172-366 23-209 (284)
109 PRK14970 DNA polymerase III su 98.0 0.00011 2.5E-09 80.7 16.3 178 171-394 17-204 (367)
110 PRK03992 proteasome-activating 98.0 6.9E-05 1.5E-09 82.4 14.0 178 169-393 129-337 (389)
111 PF14580 LRR_9: Leucine-rich r 98.0 1.8E-06 4E-11 82.1 1.4 127 735-867 15-151 (175)
112 PRK14952 DNA polymerase III su 98.0 0.00021 4.4E-09 81.6 17.9 203 171-402 13-223 (584)
113 PRK05642 DNA replication initi 98.0 0.00015 3.2E-09 73.9 14.8 147 195-397 46-206 (234)
114 CHL00181 cbbX CbbX; Provisiona 98.0 0.00039 8.4E-09 72.8 18.2 159 172-367 24-211 (287)
115 PRK14950 DNA polymerase III su 98.0 0.00027 5.9E-09 82.0 18.8 196 171-397 16-219 (585)
116 PRK08451 DNA polymerase III su 98.0 0.00033 7.2E-09 78.7 18.5 196 171-397 14-216 (535)
117 PRK14959 DNA polymerase III su 98.0 0.00027 5.8E-09 80.4 17.7 201 171-403 16-225 (624)
118 PRK14953 DNA polymerase III su 98.0 0.00041 8.9E-09 78.0 19.1 192 171-397 16-218 (486)
119 PRK14954 DNA polymerase III su 98.0 0.00021 4.5E-09 82.2 17.0 204 171-398 16-228 (620)
120 KOG2543 Origin recognition com 98.0 0.00014 2.9E-09 75.3 13.6 173 170-364 5-192 (438)
121 PRK07133 DNA polymerase III su 98.0 0.00026 5.7E-09 81.8 17.5 194 171-398 18-219 (725)
122 PRK06305 DNA polymerase III su 98.0 0.00027 6E-09 78.9 17.4 196 171-398 17-222 (451)
123 TIGR00767 rho transcription te 97.9 2.3E-05 5.1E-10 83.3 8.1 55 194-249 168-224 (415)
124 PRK00149 dnaA chromosomal repl 97.9 0.00084 1.8E-08 75.8 20.9 180 194-420 148-349 (450)
125 TIGR02881 spore_V_K stage V sp 97.9 0.00016 3.6E-09 75.1 14.0 158 172-366 7-192 (261)
126 TIGR00362 DnaA chromosomal rep 97.9 0.00091 2E-08 74.6 20.5 207 172-420 112-337 (405)
127 PRK14971 DNA polymerase III su 97.9 0.00044 9.5E-09 80.1 17.7 174 171-395 17-218 (614)
128 PRK05707 DNA polymerase III su 97.9 0.00052 1.1E-08 73.1 16.8 96 293-399 105-203 (328)
129 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00015 3.3E-09 87.3 14.1 45 171-217 187-231 (852)
130 PF13855 LRR_8: Leucine rich r 97.8 1.2E-05 2.5E-10 62.5 2.7 57 598-662 1-59 (61)
131 KOG2982 Uncharacterized conser 97.8 2.4E-05 5.1E-10 77.7 5.4 157 707-867 63-260 (418)
132 PRK14948 DNA polymerase III su 97.8 0.00082 1.8E-08 77.9 18.4 198 171-397 16-220 (620)
133 COG4886 Leucine-rich repeat (L 97.8 1.2E-05 2.6E-10 89.8 3.2 152 570-750 114-266 (394)
134 PRK06647 DNA polymerase III su 97.8 0.0011 2.3E-08 76.0 18.9 196 171-397 16-218 (563)
135 PRK14965 DNA polymerase III su 97.8 0.00053 1.1E-08 79.2 16.3 197 171-399 16-221 (576)
136 COG0466 Lon ATP-dependent Lon 97.8 0.0027 5.9E-08 71.5 20.8 161 170-366 322-509 (782)
137 KOG0989 Replication factor C, 97.8 0.00033 7.1E-09 70.5 12.2 178 170-392 35-223 (346)
138 TIGR02639 ClpA ATP-dependent C 97.8 0.00023 5E-09 85.1 13.5 45 171-217 182-226 (731)
139 TIGR00763 lon ATP-dependent pr 97.7 0.0029 6.3E-08 76.3 22.7 48 170-217 319-370 (775)
140 PRK06620 hypothetical protein; 97.7 0.0011 2.4E-08 66.2 16.1 88 296-393 87-183 (214)
141 PRK14088 dnaA chromosomal repl 97.7 0.001 2.2E-08 74.3 17.5 185 194-420 130-332 (440)
142 TIGR03689 pup_AAA proteasome A 97.7 0.00052 1.1E-08 76.7 14.5 164 171-365 182-378 (512)
143 KOG2227 Pre-initiation complex 97.7 0.00046 1E-08 73.4 13.2 209 170-400 149-373 (529)
144 PTZ00454 26S protease regulato 97.7 0.00091 2E-08 73.2 15.9 155 170-365 144-329 (398)
145 PF13855 LRR_8: Leucine rich r 97.7 3E-05 6.5E-10 60.2 3.0 59 572-632 1-60 (61)
146 PRK11331 5-methylcytosine-spec 97.7 8.2E-05 1.8E-09 80.7 7.1 69 171-243 175-243 (459)
147 PRK07399 DNA polymerase III su 97.7 0.002 4.4E-08 68.3 17.5 197 171-398 4-220 (314)
148 PRK14086 dnaA chromosomal repl 97.7 0.0044 9.5E-08 70.4 21.0 154 195-393 315-482 (617)
149 PRK10536 hypothetical protein; 97.7 0.00077 1.7E-08 67.7 13.3 132 172-333 56-214 (262)
150 PRK05563 DNA polymerase III su 97.6 0.0016 3.6E-08 74.8 17.8 193 171-395 16-216 (559)
151 CHL00176 ftsH cell division pr 97.6 0.00098 2.1E-08 77.3 15.6 175 171-392 183-387 (638)
152 KOG2982 Uncharacterized conser 97.6 2.1E-05 4.5E-10 78.1 1.2 98 766-864 174-287 (418)
153 PTZ00361 26 proteosome regulat 97.6 0.00065 1.4E-08 74.8 12.6 156 171-367 183-369 (438)
154 CHL00095 clpC Clp protease ATP 97.6 0.00036 7.9E-09 84.5 11.6 45 171-217 179-223 (821)
155 PLN03150 hypothetical protein; 97.6 8.1E-05 1.8E-09 87.2 5.8 90 599-710 419-510 (623)
156 PRK12422 chromosomal replicati 97.5 0.0043 9.2E-08 69.2 18.4 152 194-392 141-306 (445)
157 COG1373 Predicted ATPase (AAA+ 97.5 0.0019 4.2E-08 71.0 15.3 122 196-361 39-163 (398)
158 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00079 1.7E-08 81.9 12.9 45 171-217 173-217 (852)
159 TIGR01241 FtsH_fam ATP-depende 97.5 0.0034 7.3E-08 71.9 17.2 178 169-393 53-260 (495)
160 PRK08116 hypothetical protein; 97.5 0.00072 1.6E-08 70.1 10.6 102 195-332 115-221 (268)
161 KOG3665 ZYG-1-like serine/thre 97.5 3.6E-05 7.9E-10 89.7 1.0 132 598-751 122-262 (699)
162 KOG3665 ZYG-1-like serine/thre 97.5 8.9E-05 1.9E-09 86.5 4.1 104 551-662 123-230 (699)
163 PRK08769 DNA polymerase III su 97.5 0.0081 1.7E-07 63.5 18.3 95 293-400 112-209 (319)
164 PRK10865 protein disaggregatio 97.4 0.00083 1.8E-08 81.3 12.3 45 171-217 178-222 (857)
165 COG0593 DnaA ATPase involved i 97.4 0.0043 9.3E-08 66.9 16.2 154 171-367 88-259 (408)
166 PLN03150 hypothetical protein; 97.4 0.00015 3.3E-09 85.0 5.8 101 767-867 420-526 (623)
167 KOG2004 Mitochondrial ATP-depe 97.4 0.0048 1E-07 69.2 16.7 159 170-366 410-597 (906)
168 KOG0741 AAA+-type ATPase [Post 97.4 0.0049 1.1E-07 66.5 16.1 147 192-389 536-704 (744)
169 KOG0531 Protein phosphatase 1, 97.4 7.2E-05 1.6E-09 83.6 2.8 222 593-846 90-319 (414)
170 PF12799 LRR_4: Leucine Rich r 97.4 9.7E-05 2.1E-09 52.4 2.3 35 598-632 1-35 (44)
171 COG3267 ExeA Type II secretory 97.4 0.01 2.3E-07 58.7 16.9 181 193-401 50-247 (269)
172 PF05673 DUF815: Protein of un 97.4 0.0011 2.3E-08 65.8 10.0 49 168-217 24-75 (249)
173 PRK10787 DNA-binding ATP-depen 97.4 0.0062 1.3E-07 72.8 18.3 47 170-216 321-371 (784)
174 PRK08058 DNA polymerase III su 97.4 0.0045 9.7E-08 66.5 15.8 168 172-364 6-181 (329)
175 PF13177 DNA_pol3_delta2: DNA 97.4 0.0031 6.7E-08 60.0 12.9 136 175-353 1-162 (162)
176 PRK06871 DNA polymerase III su 97.4 0.014 3E-07 61.8 18.9 183 180-397 11-201 (325)
177 PF00004 AAA: ATPase family as 97.4 0.00079 1.7E-08 61.9 8.4 21 197-217 1-21 (132)
178 TIGR02639 ClpA ATP-dependent C 97.4 0.0084 1.8E-07 72.0 19.2 47 171-217 454-507 (731)
179 PRK11034 clpA ATP-dependent Cl 97.3 0.00053 1.2E-08 80.9 8.9 45 171-217 186-230 (758)
180 KOG0531 Protein phosphatase 1, 97.3 1.9E-05 4.1E-10 88.3 -3.1 240 596-870 70-319 (414)
181 smart00382 AAA ATPases associa 97.3 0.0017 3.7E-08 60.4 10.4 38 195-234 3-40 (148)
182 PRK06090 DNA polymerase III su 97.3 0.014 3E-07 61.7 17.7 182 180-400 12-202 (319)
183 PRK15386 type III secretion pr 97.3 0.00086 1.9E-08 72.1 8.7 57 594-662 48-104 (426)
184 TIGR00602 rad24 checkpoint pro 97.2 0.0032 7E-08 72.5 13.2 48 170-217 83-133 (637)
185 KOG1859 Leucine-rich repeat pr 97.2 2.2E-05 4.8E-10 86.9 -4.0 163 592-776 103-290 (1096)
186 COG2255 RuvB Holliday junction 97.2 0.0028 6E-08 63.3 10.6 172 171-397 26-221 (332)
187 TIGR03346 chaperone_ClpB ATP-d 97.2 0.02 4.2E-07 70.0 20.4 47 171-217 565-618 (852)
188 PRK07993 DNA polymerase III su 97.2 0.021 4.5E-07 61.2 18.2 186 180-399 11-204 (334)
189 COG1223 Predicted ATPase (AAA+ 97.1 0.0075 1.6E-07 59.2 12.5 48 170-217 120-174 (368)
190 TIGR03345 VI_ClpV1 type VI sec 97.1 0.017 3.7E-07 69.9 18.5 48 170-217 565-619 (852)
191 TIGR02640 gas_vesic_GvpN gas v 97.1 0.027 6E-07 58.4 17.6 56 178-242 9-64 (262)
192 PHA00729 NTP-binding motif con 97.1 0.0047 1E-07 61.1 11.0 33 183-217 8-40 (226)
193 PRK08118 topology modulation p 97.1 0.00026 5.6E-09 67.8 2.0 34 196-229 3-37 (167)
194 TIGR01243 CDC48 AAA family ATP 97.1 0.0077 1.7E-07 72.5 15.0 177 170-393 452-657 (733)
195 KOG1859 Leucine-rich repeat pr 97.1 6E-05 1.3E-09 83.6 -2.6 105 708-819 181-290 (1096)
196 TIGR01243 CDC48 AAA family ATP 97.0 0.0054 1.2E-07 73.8 13.2 48 170-217 177-235 (733)
197 PF04665 Pox_A32: Poxvirus A32 97.0 0.005 1.1E-07 61.7 10.7 35 196-232 15-49 (241)
198 PRK08939 primosomal protein Dn 97.0 0.0025 5.5E-08 67.2 9.1 118 175-331 135-260 (306)
199 PRK12608 transcription termina 97.0 0.0041 8.8E-08 66.2 10.4 71 179-251 119-191 (380)
200 PRK07952 DNA replication prote 97.0 0.0033 7.1E-08 63.8 9.2 50 180-231 85-134 (244)
201 KOG0991 Replication factor C, 97.0 0.011 2.3E-07 57.2 11.8 44 171-216 27-70 (333)
202 PRK12377 putative replication 97.0 0.0043 9.3E-08 63.1 9.8 37 194-232 101-137 (248)
203 COG1222 RPT1 ATP-dependent 26S 97.0 0.023 4.9E-07 59.0 14.8 203 171-421 151-393 (406)
204 PRK10865 protein disaggregatio 97.0 0.014 2.9E-07 71.0 15.6 47 171-217 568-621 (857)
205 KOG0744 AAA+-type ATPase [Post 97.0 0.0074 1.6E-07 61.3 11.0 82 194-306 177-262 (423)
206 PF02562 PhoH: PhoH-like prote 96.9 0.0023 5E-08 62.6 7.3 53 175-231 4-56 (205)
207 PF07693 KAP_NTPase: KAP famil 96.9 0.032 7E-07 60.3 17.1 78 176-253 1-84 (325)
208 PRK08181 transposase; Validate 96.9 0.0044 9.5E-08 63.9 9.5 22 196-217 108-129 (269)
209 KOG0733 Nuclear AAA ATPase (VC 96.9 0.016 3.4E-07 64.0 13.8 96 170-306 189-294 (802)
210 PRK06964 DNA polymerase III su 96.9 0.039 8.5E-07 59.0 16.5 107 278-400 112-226 (342)
211 PRK06526 transposase; Provisio 96.9 0.0021 4.5E-08 66.0 6.6 23 195-217 99-121 (254)
212 PRK15386 type III secretion pr 96.9 0.0028 6.1E-08 68.2 7.8 138 708-866 46-187 (426)
213 COG0470 HolB ATPase involved i 96.8 0.01 2.2E-07 64.2 12.2 143 172-353 2-169 (325)
214 COG5238 RNA1 Ran GTPase-activa 96.8 0.00027 5.8E-09 69.5 -0.2 243 571-843 29-314 (388)
215 PF12799 LRR_4: Leucine Rich r 96.8 0.0011 2.4E-08 47.0 3.0 35 832-867 1-35 (44)
216 PF10443 RNA12: RNA12 protein; 96.8 0.35 7.5E-06 52.4 22.8 220 176-408 1-287 (431)
217 PRK09361 radB DNA repair and r 96.8 0.0044 9.6E-08 62.9 8.5 56 182-240 11-66 (225)
218 PRK09183 transposase/IS protei 96.8 0.0044 9.6E-08 64.0 8.4 23 195-217 103-125 (259)
219 cd01393 recA_like RecA is a b 96.7 0.012 2.6E-07 59.9 11.2 60 182-241 7-70 (226)
220 PRK07261 topology modulation p 96.7 0.0035 7.5E-08 60.4 6.7 22 196-217 2-23 (171)
221 PRK11034 clpA ATP-dependent Cl 96.7 0.064 1.4E-06 63.7 18.4 47 171-217 458-511 (758)
222 KOG1514 Origin recognition com 96.7 0.062 1.4E-06 60.7 16.9 168 171-367 396-591 (767)
223 TIGR02237 recomb_radB DNA repa 96.7 0.0093 2E-07 59.8 9.9 54 186-242 4-57 (209)
224 KOG0730 AAA+-type ATPase [Post 96.7 0.031 6.7E-07 62.6 14.4 160 168-368 431-618 (693)
225 KOG0734 AAA+-type ATPase conta 96.7 0.021 4.5E-07 62.0 12.6 48 171-218 304-361 (752)
226 PRK08699 DNA polymerase III su 96.7 0.021 4.6E-07 60.9 12.6 70 293-364 112-184 (325)
227 PRK06921 hypothetical protein; 96.6 0.011 2.4E-07 61.2 10.0 37 194-232 117-154 (266)
228 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0016 3.5E-08 68.9 3.8 46 172-217 52-101 (361)
229 KOG2035 Replication factor C, 96.6 0.064 1.4E-06 53.6 14.2 238 173-444 15-282 (351)
230 COG2607 Predicted ATPase (AAA+ 96.6 0.016 3.5E-07 56.6 9.9 48 169-217 58-108 (287)
231 cd01394 radB RadB. The archaea 96.6 0.015 3.2E-07 58.7 10.5 55 181-237 6-60 (218)
232 CHL00195 ycf46 Ycf46; Provisio 96.6 0.039 8.5E-07 62.1 14.7 47 171-217 228-282 (489)
233 PF01695 IstB_IS21: IstB-like 96.6 0.0025 5.5E-08 61.6 4.6 36 194-231 47-82 (178)
234 PF14532 Sigma54_activ_2: Sigm 96.6 0.0032 6.9E-08 58.3 5.1 44 174-217 1-44 (138)
235 PRK06835 DNA replication prote 96.6 0.01 2.2E-07 63.2 9.4 36 195-232 184-219 (329)
236 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0082 1.8E-07 61.5 8.5 66 183-249 8-77 (235)
237 KOG0731 AAA+-type ATPase conta 96.6 0.057 1.2E-06 62.5 15.8 179 171-395 311-520 (774)
238 COG0542 clpA ATP-binding subun 96.5 0.0095 2.1E-07 69.2 9.4 44 171-216 170-213 (786)
239 PLN00020 ribulose bisphosphate 96.5 0.07 1.5E-06 56.4 14.6 26 192-217 146-171 (413)
240 COG2884 FtsE Predicted ATPase 96.5 0.023 4.9E-07 53.6 9.8 58 282-339 143-204 (223)
241 CHL00095 clpC Clp protease ATP 96.5 0.021 4.7E-07 69.4 12.5 47 171-217 509-562 (821)
242 PRK04132 replication factor C 96.5 0.069 1.5E-06 63.6 16.2 152 202-397 574-729 (846)
243 PF13207 AAA_17: AAA domain; P 96.4 0.0023 4.9E-08 57.8 3.0 22 196-217 1-22 (121)
244 COG0542 clpA ATP-binding subun 96.4 0.014 3E-07 67.8 9.9 46 171-216 491-543 (786)
245 KOG1947 Leucine rich repeat pr 96.4 0.00054 1.2E-08 78.9 -1.6 143 709-870 290-441 (482)
246 TIGR02902 spore_lonB ATP-depen 96.4 0.016 3.4E-07 66.6 10.1 45 171-217 65-109 (531)
247 KOG2228 Origin recognition com 96.4 0.069 1.5E-06 55.0 13.2 176 171-366 24-220 (408)
248 PRK15429 formate hydrogenlyase 96.3 0.044 9.6E-07 65.6 14.2 47 171-217 376-422 (686)
249 cd03247 ABCC_cytochrome_bd The 96.3 0.026 5.7E-07 54.8 10.2 24 194-217 28-51 (178)
250 KOG0735 AAA+-type ATPase [Post 96.3 0.096 2.1E-06 59.1 15.3 40 194-234 431-470 (952)
251 PTZ00494 tuzin-like protein; P 96.3 0.49 1.1E-05 50.9 19.8 170 168-365 368-544 (664)
252 PRK15455 PrkA family serine pr 96.3 0.0037 8E-08 69.6 4.5 45 172-216 77-125 (644)
253 COG2812 DnaX DNA polymerase II 96.3 0.038 8.3E-07 61.7 12.1 192 171-393 16-214 (515)
254 KOG1969 DNA replication checkp 96.3 0.012 2.7E-07 66.2 8.1 54 193-251 325-378 (877)
255 PRK06696 uridine kinase; Valid 96.2 0.0055 1.2E-07 62.1 4.9 42 176-217 3-45 (223)
256 COG1484 DnaC DNA replication p 96.2 0.018 3.8E-07 59.2 8.6 48 194-249 105-152 (254)
257 cd03238 ABC_UvrA The excision 96.2 0.047 1E-06 52.6 10.9 23 194-216 21-43 (176)
258 KOG1644 U2-associated snRNP A' 96.2 0.006 1.3E-07 57.8 4.5 81 785-866 62-150 (233)
259 KOG4579 Leucine-rich repeat (L 96.2 0.00041 8.9E-09 61.1 -3.0 81 593-692 48-129 (177)
260 KOG0733 Nuclear AAA ATPase (VC 96.1 0.11 2.4E-06 57.7 14.2 132 194-366 545-693 (802)
261 KOG4579 Leucine-rich repeat (L 96.1 0.0011 2.3E-08 58.6 -0.7 83 570-662 51-133 (177)
262 KOG0739 AAA+-type ATPase [Post 96.1 0.11 2.3E-06 52.5 12.9 175 171-393 133-335 (439)
263 PRK07667 uridine kinase; Provi 96.1 0.0076 1.7E-07 59.4 5.2 38 180-217 3-40 (193)
264 PRK04296 thymidine kinase; Pro 96.1 0.011 2.5E-07 57.9 6.3 113 195-333 3-117 (190)
265 cd01120 RecA-like_NTPases RecA 96.1 0.029 6.4E-07 53.5 9.2 40 196-237 1-40 (165)
266 TIGR02858 spore_III_AA stage I 96.1 0.093 2E-06 54.3 13.0 137 179-337 97-234 (270)
267 PRK05022 anaerobic nitric oxid 96.1 0.064 1.4E-06 61.6 13.1 48 170-217 186-233 (509)
268 PRK10733 hflB ATP-dependent me 96.0 0.061 1.3E-06 63.4 13.0 155 171-366 152-336 (644)
269 KOG1947 Leucine rich repeat pr 96.0 0.0013 2.8E-08 75.7 -0.8 222 593-871 183-416 (482)
270 COG1875 NYN ribonuclease and A 96.0 0.03 6.5E-07 58.2 8.8 139 171-333 221-389 (436)
271 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.075 1.6E-06 49.5 10.9 24 194-217 26-49 (144)
272 TIGR02012 tigrfam_recA protein 95.9 0.023 5.1E-07 59.8 8.0 100 182-304 42-143 (321)
273 cd03223 ABCD_peroxisomal_ALDP 95.9 0.083 1.8E-06 50.6 11.2 24 194-217 27-50 (166)
274 COG4608 AppF ABC-type oligopep 95.9 0.051 1.1E-06 54.8 9.9 126 194-338 39-176 (268)
275 cd03222 ABC_RNaseL_inhibitor T 95.9 0.076 1.6E-06 51.2 10.8 24 194-217 25-48 (177)
276 PLN03186 DNA repair protein RA 95.9 0.049 1.1E-06 58.3 10.4 69 181-250 110-182 (342)
277 KOG0729 26S proteasome regulat 95.9 0.14 3.1E-06 50.6 12.5 52 171-224 177-239 (435)
278 PF00448 SRP54: SRP54-type pro 95.9 0.03 6.6E-07 55.0 8.2 57 194-252 1-58 (196)
279 PRK11889 flhF flagellar biosyn 95.9 0.096 2.1E-06 56.2 12.2 25 193-217 240-264 (436)
280 COG1136 SalX ABC-type antimicr 95.9 0.11 2.4E-06 51.5 11.9 59 281-339 147-210 (226)
281 cd03214 ABC_Iron-Siderophores_ 95.9 0.061 1.3E-06 52.3 10.2 122 194-335 25-161 (180)
282 cd01131 PilT Pilus retraction 95.8 0.026 5.5E-07 55.9 7.5 112 195-336 2-113 (198)
283 PRK09354 recA recombinase A; P 95.8 0.028 6E-07 59.8 8.1 100 182-304 47-148 (349)
284 COG5238 RNA1 Ran GTPase-activa 95.8 0.0035 7.6E-08 61.9 1.1 42 591-632 85-131 (388)
285 TIGR02238 recomb_DMC1 meiotic 95.8 0.074 1.6E-06 56.4 11.1 69 181-250 83-155 (313)
286 KOG0743 AAA+-type ATPase [Post 95.8 1.6 3.4E-05 47.5 20.6 77 322-406 337-417 (457)
287 PRK06067 flagellar accessory p 95.8 0.048 1E-06 55.7 9.4 113 181-304 12-130 (234)
288 cd00983 recA RecA is a bacter 95.7 0.042 9.2E-07 58.0 8.9 100 182-304 42-143 (325)
289 cd00561 CobA_CobO_BtuR ATP:cor 95.7 0.13 2.7E-06 48.3 11.1 51 283-333 83-139 (159)
290 TIGR01817 nifA Nif-specific re 95.7 0.23 5E-06 57.6 15.8 49 169-217 194-242 (534)
291 TIGR01069 mutS2 MutS2 family p 95.7 0.72 1.6E-05 55.4 20.1 113 293-420 401-520 (771)
292 PRK05541 adenylylsulfate kinas 95.7 0.015 3.3E-07 56.4 5.1 36 193-230 6-41 (176)
293 cd00544 CobU Adenosylcobinamid 95.7 0.036 7.8E-07 53.0 7.4 37 197-238 2-38 (169)
294 TIGR03877 thermo_KaiC_1 KaiC d 95.7 0.051 1.1E-06 55.5 9.1 60 181-244 8-67 (237)
295 cd01133 F1-ATPase_beta F1 ATP 95.7 0.033 7E-07 57.1 7.5 51 194-246 69-121 (274)
296 PRK13695 putative NTPase; Prov 95.6 0.03 6.4E-07 54.2 7.0 34 196-230 2-35 (174)
297 cd03246 ABCC_Protease_Secretio 95.6 0.072 1.6E-06 51.5 9.6 24 194-217 28-51 (173)
298 PTZ00035 Rad51 protein; Provis 95.6 0.091 2E-06 56.4 11.2 69 181-250 105-177 (337)
299 PRK11608 pspF phage shock prot 95.6 0.031 6.8E-07 60.0 7.6 47 171-217 6-52 (326)
300 KOG0728 26S proteasome regulat 95.6 0.59 1.3E-05 45.9 15.1 151 173-365 148-331 (404)
301 cd01121 Sms Sms (bacterial rad 95.6 0.046 9.9E-07 59.4 8.6 53 180-234 68-120 (372)
302 cd03216 ABC_Carb_Monos_I This 95.5 0.099 2.2E-06 49.9 10.1 24 194-217 26-49 (163)
303 TIGR02239 recomb_RAD51 DNA rep 95.5 0.072 1.6E-06 56.7 9.8 68 181-249 83-154 (316)
304 PLN03187 meiotic recombination 95.5 0.11 2.3E-06 55.6 11.1 69 182-251 114-186 (344)
305 PRK13531 regulatory ATPase Rav 95.5 0.014 3.1E-07 64.3 4.6 43 171-217 20-62 (498)
306 PRK05800 cobU adenosylcobinami 95.5 0.019 4E-07 55.0 4.8 22 196-217 3-24 (170)
307 COG0464 SpoVK ATPases of the A 95.5 0.24 5.2E-06 57.0 14.8 155 171-366 242-424 (494)
308 PF08423 Rad51: Rad51; InterP 95.5 0.088 1.9E-06 54.3 10.1 67 182-249 26-96 (256)
309 TIGR03499 FlhF flagellar biosy 95.5 0.053 1.1E-06 56.9 8.6 24 194-217 194-217 (282)
310 cd03228 ABCC_MRP_Like The MRP 95.5 0.15 3.2E-06 49.2 11.2 24 194-217 28-51 (171)
311 COG1618 Predicted nucleotide k 95.5 0.012 2.7E-07 53.7 3.3 23 195-217 6-28 (179)
312 COG1121 ZnuC ABC-type Mn/Zn tr 95.4 0.14 3.1E-06 51.6 10.9 57 277-335 139-202 (254)
313 TIGR00150 HI0065_YjeE ATPase, 95.4 0.021 4.6E-07 51.6 4.5 40 178-217 6-45 (133)
314 PF13671 AAA_33: AAA domain; P 95.4 0.064 1.4E-06 49.9 8.0 22 196-217 1-22 (143)
315 cd03230 ABC_DR_subfamily_A Thi 95.4 0.17 3.7E-06 48.9 11.1 24 194-217 26-49 (173)
316 COG1126 GlnQ ABC-type polar am 95.3 0.3 6.5E-06 47.4 12.2 57 282-338 142-202 (240)
317 PRK09270 nucleoside triphospha 95.3 0.022 4.7E-07 57.9 5.1 27 191-217 30-56 (229)
318 KOG2123 Uncharacterized conser 95.3 0.003 6.5E-08 62.6 -1.4 80 570-662 17-98 (388)
319 PRK00771 signal recognition pa 95.3 0.18 4E-06 55.8 12.3 25 193-217 94-118 (437)
320 PRK00409 recombination and DNA 95.3 3.2 7E-05 50.1 23.6 113 293-420 406-525 (782)
321 PTZ00301 uridine kinase; Provi 95.3 0.019 4.1E-07 57.0 4.1 23 194-216 3-25 (210)
322 COG0468 RecA RecA/RadA recombi 95.2 0.12 2.5E-06 53.4 9.9 58 183-242 49-106 (279)
323 cd03217 ABC_FeS_Assembly ABC-t 95.2 0.11 2.3E-06 51.7 9.4 24 194-217 26-49 (200)
324 PRK10867 signal recognition pa 95.2 0.23 5E-06 54.9 12.7 24 193-216 99-122 (433)
325 PRK11388 DNA-binding transcrip 95.2 0.26 5.6E-06 58.6 14.2 47 171-217 325-371 (638)
326 KOG1644 U2-associated snRNP A' 95.2 0.032 6.8E-07 53.1 5.0 98 740-841 43-149 (233)
327 PF13238 AAA_18: AAA domain; P 95.2 0.014 3.1E-07 53.1 2.8 21 197-217 1-21 (129)
328 TIGR01359 UMP_CMP_kin_fam UMP- 95.2 0.2 4.4E-06 48.8 11.2 22 196-217 1-22 (183)
329 COG1066 Sms Predicted ATP-depe 95.2 0.065 1.4E-06 56.9 7.8 101 179-304 78-178 (456)
330 COG0572 Udk Uridine kinase [Nu 95.1 0.044 9.6E-07 53.6 6.1 25 193-217 7-31 (218)
331 PRK14722 flhF flagellar biosyn 95.1 0.15 3.3E-06 55.0 10.8 57 194-250 137-194 (374)
332 KOG0726 26S proteasome regulat 95.1 0.34 7.3E-06 48.8 12.2 52 171-224 185-247 (440)
333 PF07724 AAA_2: AAA domain (Cd 95.1 0.048 1E-06 52.3 6.3 40 193-234 2-42 (171)
334 TIGR00959 ffh signal recogniti 95.1 0.15 3.3E-06 56.3 11.0 24 194-217 99-122 (428)
335 cd03229 ABC_Class3 This class 95.1 0.1 2.3E-06 50.6 8.8 24 194-217 26-49 (178)
336 PRK04328 hypothetical protein; 95.1 0.067 1.4E-06 55.1 7.8 51 182-234 11-61 (249)
337 PF00485 PRK: Phosphoribulokin 95.1 0.016 3.4E-07 57.3 3.0 22 196-217 1-22 (194)
338 PRK07132 DNA polymerase III su 95.1 1.5 3.3E-05 46.1 17.8 93 293-398 89-184 (299)
339 PF03308 ArgK: ArgK protein; 95.1 0.028 6.1E-07 56.2 4.7 64 179-242 14-77 (266)
340 COG0465 HflB ATP-dependent Zn 95.1 0.23 4.9E-06 56.5 12.3 52 168-219 147-208 (596)
341 cd03282 ABC_MSH4_euk MutS4 hom 95.1 0.25 5.3E-06 49.0 11.4 47 292-340 106-159 (204)
342 PRK08533 flagellar accessory p 95.1 0.15 3.2E-06 51.8 10.0 49 193-245 23-71 (230)
343 cd00267 ABC_ATPase ABC (ATP-bi 95.0 0.073 1.6E-06 50.5 7.3 24 194-217 25-48 (157)
344 PRK06547 hypothetical protein; 95.0 0.033 7.2E-07 53.4 4.9 26 192-217 13-38 (172)
345 TIGR00708 cobA cob(I)alamin ad 95.0 0.14 3E-06 48.6 8.8 127 195-332 6-140 (173)
346 cd03115 SRP The signal recogni 95.0 0.16 3.5E-06 49.0 9.8 22 196-217 2-23 (173)
347 cd02019 NK Nucleoside/nucleoti 95.0 0.018 3.9E-07 45.8 2.5 22 196-217 1-22 (69)
348 TIGR02974 phageshock_pspF psp 95.0 0.16 3.4E-06 54.6 10.5 45 173-217 1-45 (329)
349 TIGR00382 clpX endopeptidase C 95.0 0.14 3.1E-06 56.0 10.3 47 170-216 76-138 (413)
350 COG1102 Cmk Cytidylate kinase 95.0 0.023 5E-07 52.0 3.4 43 196-251 2-44 (179)
351 smart00534 MUTSac ATPase domai 95.0 0.13 2.8E-06 50.2 9.1 21 196-216 1-21 (185)
352 TIGR03881 KaiC_arch_4 KaiC dom 95.0 0.13 2.8E-06 52.3 9.5 51 182-234 8-58 (229)
353 PRK08233 hypothetical protein; 95.0 0.021 4.5E-07 55.8 3.5 24 194-217 3-26 (182)
354 PF13604 AAA_30: AAA domain; P 94.9 0.17 3.7E-06 49.9 9.8 23 195-217 19-41 (196)
355 PRK12724 flagellar biosynthesi 94.9 0.12 2.7E-06 56.1 9.4 24 194-217 223-246 (432)
356 PRK14974 cell division protein 94.9 0.26 5.7E-06 52.6 11.8 25 193-217 139-163 (336)
357 PRK10923 glnG nitrogen regulat 94.9 0.44 9.6E-06 54.5 14.7 46 172-217 139-184 (469)
358 TIGR00235 udk uridine kinase. 94.9 0.021 4.6E-07 57.0 3.4 25 193-217 5-29 (207)
359 KOG0727 26S proteasome regulat 94.9 0.35 7.5E-06 47.6 11.3 47 171-217 155-212 (408)
360 KOG2739 Leucine-rich acidic nu 94.9 0.013 2.8E-07 58.2 1.7 80 785-866 63-153 (260)
361 PRK05480 uridine/cytidine kina 94.9 0.023 5E-07 56.9 3.6 25 193-217 5-29 (209)
362 PF00158 Sigma54_activat: Sigm 94.9 0.087 1.9E-06 50.3 7.3 45 173-217 1-45 (168)
363 PF12061 DUF3542: Protein of u 94.8 0.099 2.1E-06 52.9 7.7 75 5-86 297-372 (402)
364 PRK12723 flagellar biosynthesi 94.8 0.32 7E-06 53.0 12.4 25 193-217 173-197 (388)
365 cd03215 ABC_Carb_Monos_II This 94.8 0.29 6.2E-06 47.7 11.0 24 194-217 26-49 (182)
366 COG1703 ArgK Putative periplas 94.8 0.03 6.5E-07 56.8 4.0 67 180-246 37-103 (323)
367 COG0563 Adk Adenylate kinase a 94.8 0.079 1.7E-06 51.1 6.8 22 196-217 2-23 (178)
368 PRK05342 clpX ATP-dependent pr 94.8 0.061 1.3E-06 59.2 6.8 46 171-216 71-130 (412)
369 cd01122 GP4d_helicase GP4d_hel 94.7 0.39 8.5E-06 50.3 12.7 54 194-250 30-83 (271)
370 cd03281 ABC_MSH5_euk MutS5 hom 94.7 0.24 5.2E-06 49.5 10.4 23 194-216 29-51 (213)
371 cd01125 repA Hexameric Replica 94.6 0.29 6.3E-06 50.1 10.9 22 196-217 3-24 (239)
372 PF00560 LRR_1: Leucine Rich R 94.5 0.0098 2.1E-07 35.0 -0.0 20 600-619 2-21 (22)
373 PF07728 AAA_5: AAA domain (dy 94.5 0.061 1.3E-06 49.8 5.3 42 197-243 2-43 (139)
374 COG1224 TIP49 DNA helicase TIP 94.5 0.058 1.3E-06 55.8 5.4 55 170-224 38-95 (450)
375 PRK06762 hypothetical protein; 94.5 0.031 6.7E-07 53.6 3.3 23 195-217 3-25 (166)
376 PRK11823 DNA repair protein Ra 94.5 0.092 2E-06 58.8 7.4 53 180-234 66-118 (446)
377 COG2842 Uncharacterized ATPase 94.5 0.29 6.4E-06 49.9 10.2 121 172-322 73-195 (297)
378 PF07726 AAA_3: ATPase family 94.4 0.028 6.1E-07 49.9 2.6 28 197-226 2-29 (131)
379 COG0467 RAD55 RecA-superfamily 94.4 0.052 1.1E-06 56.5 5.1 49 185-235 14-62 (260)
380 TIGR03574 selen_PSTK L-seryl-t 94.4 0.2 4.3E-06 51.7 9.4 21 197-217 2-22 (249)
381 COG1419 FlhF Flagellar GTP-bin 94.4 0.5 1.1E-05 50.8 12.3 56 193-249 202-259 (407)
382 cd02025 PanK Pantothenate kina 94.4 0.14 3E-06 51.5 7.9 22 196-217 1-22 (220)
383 PRK09519 recA DNA recombinatio 94.4 0.12 2.6E-06 60.9 8.3 101 181-304 46-148 (790)
384 TIGR03575 selen_PSTK_euk L-ser 94.4 0.15 3.3E-06 54.3 8.5 21 197-217 2-22 (340)
385 TIGR00416 sms DNA repair prote 94.4 0.14 3.1E-06 57.4 8.7 55 178-234 78-132 (454)
386 TIGR00064 ftsY signal recognit 94.4 0.26 5.7E-06 51.2 10.1 39 192-232 70-108 (272)
387 PF06745 KaiC: KaiC; InterPro 94.4 0.019 4.1E-07 58.3 1.7 111 183-303 8-124 (226)
388 TIGR00390 hslU ATP-dependent p 94.3 0.1 2.3E-06 56.4 7.1 77 171-249 12-104 (441)
389 PF08298 AAA_PrkA: PrkA AAA do 94.3 0.049 1.1E-06 57.3 4.4 47 170-216 60-110 (358)
390 PF01583 APS_kinase: Adenylyls 94.3 0.045 9.8E-07 51.0 3.7 36 194-231 2-37 (156)
391 PF06309 Torsin: Torsin; Inte 94.3 0.063 1.4E-06 47.5 4.4 47 171-217 25-76 (127)
392 cd03283 ABC_MutS-like MutS-lik 94.3 0.45 9.7E-06 47.0 11.0 22 195-216 26-47 (199)
393 PRK04301 radA DNA repair and r 94.2 0.13 2.8E-06 55.2 7.6 67 182-249 90-160 (317)
394 PRK10463 hydrogenase nickel in 94.2 0.15 3.3E-06 52.7 7.7 25 193-217 103-127 (290)
395 PF00910 RNA_helicase: RNA hel 94.2 0.027 5.9E-07 49.3 2.0 21 197-217 1-21 (107)
396 PRK03839 putative kinase; Prov 94.2 0.035 7.5E-07 54.1 3.0 22 196-217 2-23 (180)
397 TIGR02236 recomb_radA DNA repa 94.1 0.16 3.4E-06 54.4 8.2 66 183-249 84-153 (310)
398 cd03213 ABCG_EPDR ABCG transpo 94.1 0.47 1E-05 46.8 10.9 24 194-217 35-58 (194)
399 TIGR01360 aden_kin_iso1 adenyl 94.1 0.04 8.7E-07 54.1 3.3 24 194-217 3-26 (188)
400 cd01129 PulE-GspE PulE/GspE Th 94.1 0.31 6.8E-06 50.5 10.0 106 174-313 62-168 (264)
401 PRK06002 fliI flagellum-specif 94.0 0.18 4E-06 55.5 8.4 51 194-247 165-215 (450)
402 PRK08972 fliI flagellum-specif 94.0 0.12 2.7E-06 56.5 7.0 49 194-246 162-211 (444)
403 COG0714 MoxR-like ATPases [Gen 94.0 0.099 2.1E-06 56.5 6.3 65 172-245 25-89 (329)
404 PRK13765 ATP-dependent proteas 94.0 0.085 1.8E-06 61.2 6.1 76 170-251 30-105 (637)
405 cd03285 ABC_MSH2_euk MutS2 hom 94.0 0.3 6.5E-06 49.2 9.3 23 194-216 30-52 (222)
406 PRK04040 adenylate kinase; Pro 94.0 0.045 9.7E-07 53.5 3.2 24 194-217 2-25 (188)
407 PRK00625 shikimate kinase; Pro 93.9 0.04 8.7E-07 52.9 2.8 22 196-217 2-23 (173)
408 PRK05917 DNA polymerase III su 93.9 1 2.2E-05 46.8 13.1 58 293-352 94-154 (290)
409 cd03287 ABC_MSH3_euk MutS3 hom 93.9 0.48 1E-05 47.5 10.5 45 293-338 109-160 (222)
410 KOG2123 Uncharacterized conser 93.9 0.0045 9.8E-08 61.4 -3.8 58 739-801 19-77 (388)
411 PRK12727 flagellar biosynthesi 93.9 0.17 3.8E-06 56.5 7.9 24 194-217 350-373 (559)
412 cd03280 ABC_MutS2 MutS2 homolo 93.9 0.28 6.2E-06 48.6 8.9 21 195-215 29-49 (200)
413 PRK05201 hslU ATP-dependent pr 93.9 0.13 2.9E-06 55.6 6.8 79 170-250 14-108 (443)
414 TIGR02655 circ_KaiC circadian 93.8 0.16 3.6E-06 57.8 7.9 114 179-303 248-362 (484)
415 KOG1051 Chaperone HSP104 and r 93.8 0.33 7.1E-06 57.8 10.3 115 171-317 562-685 (898)
416 cd02023 UMPK Uridine monophosp 93.8 0.039 8.4E-07 54.8 2.5 22 196-217 1-22 (198)
417 KOG3347 Predicted nucleotide k 93.8 0.076 1.6E-06 47.8 4.0 33 195-234 8-40 (176)
418 PRK05703 flhF flagellar biosyn 93.8 0.39 8.5E-06 53.4 10.6 38 195-232 222-259 (424)
419 TIGR02322 phosphon_PhnN phosph 93.8 0.048 1E-06 53.1 3.1 23 195-217 2-24 (179)
420 PF03205 MobB: Molybdopterin g 93.8 0.064 1.4E-06 49.5 3.7 39 195-234 1-39 (140)
421 cd02024 NRK1 Nicotinamide ribo 93.7 0.041 8.9E-07 53.3 2.5 22 196-217 1-22 (187)
422 PRK14738 gmk guanylate kinase; 93.7 0.057 1.2E-06 53.8 3.5 28 190-217 9-36 (206)
423 TIGR00764 lon_rel lon-related 93.7 0.15 3.3E-06 59.4 7.4 75 170-251 17-92 (608)
424 PF13481 AAA_25: AAA domain; P 93.7 0.11 2.4E-06 51.2 5.5 41 195-235 33-81 (193)
425 PRK12726 flagellar biosynthesi 93.7 0.67 1.5E-05 49.8 11.4 90 193-305 205-296 (407)
426 PLN02318 phosphoribulokinase/u 93.7 0.081 1.8E-06 59.6 4.8 34 184-217 55-88 (656)
427 PRK00131 aroK shikimate kinase 93.6 0.053 1.1E-06 52.5 3.1 24 194-217 4-27 (175)
428 KOG1532 GTPase XAB1, interacts 93.6 0.057 1.2E-06 53.7 3.2 60 192-251 17-85 (366)
429 cd03243 ABC_MutS_homologs The 93.6 0.41 8.8E-06 47.6 9.4 22 195-216 30-51 (202)
430 COG1428 Deoxynucleoside kinase 93.6 0.053 1.2E-06 52.3 2.8 24 194-217 4-27 (216)
431 PF00406 ADK: Adenylate kinase 93.5 0.32 6.9E-06 45.7 8.2 19 199-217 1-19 (151)
432 PRK00889 adenylylsulfate kinas 93.5 0.067 1.4E-06 51.8 3.5 24 194-217 4-27 (175)
433 TIGR01420 pilT_fam pilus retra 93.5 0.23 5E-06 53.8 8.0 112 194-335 122-233 (343)
434 TIGR02868 CydC thiol reductant 93.5 0.73 1.6E-05 53.6 12.7 25 193-217 360-384 (529)
435 COG1124 DppF ABC-type dipeptid 93.5 0.098 2.1E-06 51.7 4.5 23 194-216 33-55 (252)
436 PF00625 Guanylate_kin: Guanyl 93.4 0.08 1.7E-06 51.7 4.0 37 194-232 2-38 (183)
437 PRK05439 pantothenate kinase; 93.4 0.1 2.2E-06 54.8 5.0 26 191-216 83-108 (311)
438 PF06068 TIP49: TIP49 C-termin 93.4 0.1 2.3E-06 55.0 4.9 48 170-217 23-73 (398)
439 PF00154 RecA: recA bacterial 93.4 0.27 5.8E-06 51.8 8.0 91 193-306 52-143 (322)
440 TIGR03263 guanyl_kin guanylate 93.4 0.061 1.3E-06 52.4 3.1 23 195-217 2-24 (180)
441 PRK10751 molybdopterin-guanine 93.4 0.069 1.5E-06 50.8 3.3 25 193-217 5-29 (173)
442 PRK06217 hypothetical protein; 93.4 0.055 1.2E-06 52.8 2.8 22 196-217 3-24 (183)
443 cd02028 UMPK_like Uridine mono 93.4 0.052 1.1E-06 52.7 2.5 22 196-217 1-22 (179)
444 cd01135 V_A-ATPase_B V/A-type 93.4 0.16 3.5E-06 52.0 6.1 54 194-247 69-125 (276)
445 PHA02774 E1; Provisional 93.4 0.33 7.1E-06 54.7 8.9 49 179-232 420-468 (613)
446 PF03193 DUF258: Protein of un 93.4 0.14 3E-06 48.1 5.1 35 178-217 24-58 (161)
447 KOG0924 mRNA splicing factor A 93.4 0.6 1.3E-05 52.5 10.7 148 179-338 360-516 (1042)
448 cd02021 GntK Gluconate kinase 93.3 0.055 1.2E-06 50.8 2.6 22 196-217 1-22 (150)
449 cd00227 CPT Chloramphenicol (C 93.3 0.065 1.4E-06 51.9 3.1 23 195-217 3-25 (175)
450 KOG2170 ATPase of the AAA+ sup 93.3 0.18 3.8E-06 51.3 6.0 47 171-217 82-133 (344)
451 cd00071 GMPK Guanosine monopho 93.3 0.07 1.5E-06 49.1 3.1 21 197-217 2-22 (137)
452 PF08477 Miro: Miro-like prote 93.3 0.066 1.4E-06 47.9 2.9 22 197-218 2-23 (119)
453 cd00820 PEPCK_HprK Phosphoenol 93.2 0.091 2E-06 45.4 3.5 22 194-215 15-36 (107)
454 COG3840 ThiQ ABC-type thiamine 93.2 1.8 3.9E-05 40.9 11.9 23 194-216 25-47 (231)
455 COG1643 HrpA HrpA-like helicas 93.2 0.55 1.2E-05 56.0 11.0 152 177-336 52-209 (845)
456 cd01878 HflX HflX subfamily. 93.2 0.15 3.3E-06 50.8 5.6 24 194-217 41-64 (204)
457 PRK00300 gmk guanylate kinase; 93.2 0.072 1.6E-06 53.1 3.3 24 194-217 5-28 (205)
458 PRK06995 flhF flagellar biosyn 93.1 0.99 2.1E-05 50.6 12.3 24 194-217 256-279 (484)
459 cd02020 CMPK Cytidine monophos 93.1 0.06 1.3E-06 50.4 2.5 22 196-217 1-22 (147)
460 KOG4252 GTP-binding protein [S 93.1 0.44 9.6E-06 44.1 7.7 36 196-232 22-57 (246)
461 PF01078 Mg_chelatase: Magnesi 93.1 0.14 3.1E-06 49.9 4.9 42 171-216 3-44 (206)
462 PF03969 AFG1_ATPase: AFG1-lik 93.1 0.23 4.9E-06 53.8 7.1 26 194-219 62-87 (362)
463 KOG2859 DNA repair protein, me 93.1 2.2 4.7E-05 41.3 12.5 113 193-320 37-153 (293)
464 PRK13947 shikimate kinase; Pro 93.0 0.067 1.4E-06 51.6 2.7 22 196-217 3-24 (171)
465 cd01134 V_A-ATPase_A V/A-type 93.0 0.35 7.5E-06 51.2 8.0 59 182-245 146-205 (369)
466 PTZ00185 ATPase alpha subunit; 93.0 0.39 8.4E-06 53.3 8.6 45 194-238 189-239 (574)
467 PF12775 AAA_7: P-loop contain 93.0 0.1 2.2E-06 54.3 4.1 34 181-217 23-56 (272)
468 COG2019 AdkA Archaeal adenylat 92.9 0.089 1.9E-06 48.5 3.1 24 194-217 4-27 (189)
469 COG1936 Predicted nucleotide k 92.9 0.075 1.6E-06 49.5 2.6 20 196-215 2-21 (180)
470 PRK05922 type III secretion sy 92.9 0.3 6.4E-06 53.7 7.7 24 194-217 157-180 (434)
471 PRK08927 fliI flagellum-specif 92.9 0.24 5.1E-06 54.6 6.9 49 194-246 158-207 (442)
472 PRK13949 shikimate kinase; Pro 92.9 0.074 1.6E-06 51.0 2.8 22 196-217 3-24 (169)
473 PRK00279 adk adenylate kinase; 92.9 0.66 1.4E-05 46.6 9.8 22 196-217 2-23 (215)
474 KOG1970 Checkpoint RAD17-RFC c 92.9 0.78 1.7E-05 50.7 10.6 49 178-230 89-142 (634)
475 TIGR00554 panK_bact pantothena 92.9 0.14 3E-06 53.4 4.9 25 192-216 60-84 (290)
476 PRK10078 ribose 1,5-bisphospho 92.9 0.083 1.8E-06 51.7 3.2 23 195-217 3-25 (186)
477 PF00006 ATP-synt_ab: ATP synt 92.9 0.35 7.5E-06 48.1 7.5 47 195-245 16-63 (215)
478 PF03266 NTPase_1: NTPase; In 92.8 0.077 1.7E-06 50.7 2.7 21 197-217 2-22 (168)
479 PRK03846 adenylylsulfate kinas 92.8 0.097 2.1E-06 51.8 3.5 25 193-217 23-47 (198)
480 PRK13545 tagH teichoic acids e 92.8 1.3 2.9E-05 49.9 12.6 24 194-217 50-73 (549)
481 PRK14721 flhF flagellar biosyn 92.8 0.48 1E-05 52.1 9.1 23 194-216 191-213 (420)
482 KOG3864 Uncharacterized conser 92.7 0.011 2.3E-07 56.3 -3.1 79 789-867 103-187 (221)
483 cd01132 F1_ATPase_alpha F1 ATP 92.7 0.28 6E-06 50.3 6.7 49 194-246 69-120 (274)
484 PRK09435 membrane ATPase/prote 92.7 0.18 4E-06 53.6 5.6 37 181-217 43-79 (332)
485 TIGR00750 lao LAO/AO transport 92.7 0.12 2.7E-06 54.7 4.4 37 181-217 21-57 (300)
486 TIGR03375 type_I_sec_LssB type 92.7 1.2 2.6E-05 53.7 13.4 23 194-216 491-513 (694)
487 COG0541 Ffh Signal recognition 92.6 7.5 0.00016 42.3 17.3 59 193-254 99-159 (451)
488 TIGR03498 FliI_clade3 flagella 92.6 0.24 5.2E-06 54.5 6.6 24 194-217 140-163 (418)
489 COG0003 ArsA Predicted ATPase 92.6 0.15 3.1E-06 54.0 4.7 48 194-243 2-49 (322)
490 COG3640 CooC CO dehydrogenase 92.6 0.17 3.8E-06 49.6 4.8 42 196-238 2-43 (255)
491 PRK14530 adenylate kinase; Pro 92.6 0.086 1.9E-06 53.0 2.9 22 196-217 5-26 (215)
492 cd02027 APSK Adenosine 5'-phos 92.6 0.085 1.8E-06 49.4 2.6 22 196-217 1-22 (149)
493 KOG0651 26S proteasome regulat 92.6 0.36 7.8E-06 49.3 7.0 30 193-224 165-194 (388)
494 PRK12339 2-phosphoglycerate ki 92.6 0.11 2.3E-06 51.1 3.4 24 194-217 3-26 (197)
495 PRK05986 cob(I)alamin adenolsy 92.5 0.66 1.4E-05 44.8 8.6 129 194-333 22-159 (191)
496 COG0194 Gmk Guanylate kinase [ 92.5 0.21 4.5E-06 47.4 5.0 24 194-217 4-27 (191)
497 PRK12597 F0F1 ATP synthase sub 92.5 0.29 6.3E-06 54.3 7.1 52 194-246 143-195 (461)
498 TIGR02788 VirB11 P-type DNA tr 92.5 0.26 5.7E-06 52.5 6.6 50 283-335 207-256 (308)
499 PRK14737 gmk guanylate kinase; 92.5 0.11 2.4E-06 50.6 3.5 25 193-217 3-27 (186)
500 PRK07276 DNA polymerase III su 92.5 5.9 0.00013 41.4 16.2 68 293-363 103-173 (290)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-88 Score=787.77 Aligned_cols=792 Identities=28% Similarity=0.422 Sum_probs=611.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhHHHHHHHHHHHhhhchhhh
Q 048733 3 EAAVNFALETLGPLLVEEIRLLGGVRKEVQSIKSELESLRSFLKDADARAAVEELEGGGEESVRTWVKQLRDEAYRIEDF 82 (887)
Q Consensus 3 ~~~v~~~~~kl~~~l~~e~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~~~~~~~wl~~lr~~ayd~eD~ 82 (887)
++.++..++|+.+++.+++..+.++++.+..++++|..+++++.++++++... ..+..|.+.+++++|++||.
T Consensus 2 ~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~-------~~~~~~~e~~~~~~~~~e~~ 74 (889)
T KOG4658|consen 2 GACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDL-------ERRVNWEEDVGDLVYLAEDI 74 (889)
T ss_pred CeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34456678899999999999999999999999999999999999999987766 88999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCccc-h--hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCCCCCCcccC
Q 048733 83 IDEYALMVAKLPHESGLVG-V--LHRISRFIKKLRRRRGVAAEIQDIESALADIKRRGESYRFRSIDEPSRSGTRNVIPH 159 (887)
Q Consensus 83 lD~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (887)
++.|....... +..+... . ..+..++ ...++..+..+..+.+++.++.+..+.|+............ . +.
T Consensus 75 ~~~~~v~~~~~-~~~~~l~~~~~~~~~~c~---~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~-~--~~ 147 (889)
T KOG4658|consen 75 IWLFLVEEIER-KANDLLSTRSVERQRLCL---CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESL-D--PR 147 (889)
T ss_pred HHHHHHHHHHH-HHhHHhhhhHHHHHHHhh---hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccc-c--ch
Confidence 99998876552 1111111 1 1111111 14566777777777777777777777776543221111000 0 12
Q ss_pred CCCCcCCCcccCccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccC-ccCCCceeEEEEeCCCCCH
Q 048733 160 DSRVRSFFVEDDEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEG-LKTHFSCRAWVTVGKEYNK 238 (887)
Q Consensus 160 ~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~~~~~ 238 (887)
..+.+.+...... ||.+..++++.+.|.+.+. .+++|+||||+||||||+.++|+.. ++.+|+.++||+||+.++.
T Consensus 148 ~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~ 224 (889)
T KOG4658|consen 148 EKVETRPIQSESD-VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTT 224 (889)
T ss_pred hhcccCCCCcccc-ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccH
Confidence 2233444444444 9999999999999998764 8999999999999999999999977 9999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChhHHHHHHHhcCC
Q 048733 239 NDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKIDFWRDVEHALLD 318 (887)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~ 318 (887)
.++..+|++.++.... .......+++...|.+.|++|||+|||||||+..+|+.+..++|.
T Consensus 225 ~~iq~~Il~~l~~~~~-------------------~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~ 285 (889)
T KOG4658|consen 225 RKIQQTILERLGLLDE-------------------EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPS 285 (889)
T ss_pred HhHHHHHHHHhccCCc-------------------ccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCC
Confidence 9999999999876432 222233478999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEccchhHHhh-hccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 048733 319 NKKCSRIIVTTRHMNVAKF-CKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIV 397 (887)
Q Consensus 319 ~~~gs~iivTtR~~~v~~~-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 397 (887)
..+||+|++|||+..|+.. ++. ...++++.|+++|||+||++.+|.... ...+.++++|++|+++|+|+|||+.
T Consensus 286 ~~~g~KvvlTTRs~~V~~~~m~~---~~~~~v~~L~~~eaW~LF~~~v~~~~~--~~~~~i~~lak~v~~kC~GLPLAl~ 360 (889)
T KOG4658|consen 286 RENGSKVVLTTRSEEVCGRAMGV---DYPIEVECLTPEEAWDLFQKKVGPNTL--GSHPDIEELAKEVAEKCGGLPLALN 360 (889)
T ss_pred ccCCeEEEEEeccHhhhhccccC---CccccccccCccccHHHHHHhhccccc--cccccHHHHHHHHHHHhCChHHHHH
Confidence 9999999999999999988 443 389999999999999999999987643 2344589999999999999999999
Q ss_pred HHhhhhcCCCCCHHHHHHHHHHhccccCCC--CCccchHHHHhhcccCCChhhHHHHhhhcccCCCcccChhHHHHHHHH
Q 048733 398 AVGGLLSTKNRIVSEWKKLFDRLGSMLGSD--PHLKDCNRVLSEGYYDLPHHLKSCLLYFGLFPESCKINRGRLIRLWIA 475 (887)
Q Consensus 398 ~~~~~l~~~~~~~~~w~~~~~~~~~~~~~~--~~~~~i~~~l~~sy~~Lp~~~k~cf~~~s~fp~~~~i~~~~li~~w~a 475 (887)
++|+.|+.+.. .++|+++++.+.+....+ ...+.+.+++++||+.||+++|.||+|||+||+||.|.++.|+..|+|
T Consensus 361 viG~~ma~K~t-~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWia 439 (889)
T KOG4658|consen 361 VLGGLLACKKT-VQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIA 439 (889)
T ss_pred HHHHHhcCCCc-HHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHh
Confidence 99999999986 889999999998874432 234689999999999999999999999999999999999999999999
Q ss_pred cCcccc-CCCCCHHHHHHHHHHHHhhcCCeeeeecCCCCceeEEEeCHHHHHHHHHhhh-----hcCceEEeCCC-----
Q 048733 476 EGLVQY-SKRFTSEQVAAEYLDELIDRSLVQVSNREIPGRAIICHVHDLMHEIIIRKTE-----ELGFSRLLNGE----- 544 (887)
Q Consensus 476 ~g~i~~-~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~Hdlv~~~~~~~~~-----~e~~~~~~~~~----- 544 (887)
|||+.. ..+.+.+++|++|+.+|++++|++..+.. ++..+|+|||+|||+|.++++ +|+++.....+
T Consensus 440 EGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~ 517 (889)
T KOG4658|consen 440 EGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIP 517 (889)
T ss_pred ccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccc
Confidence 999987 55788999999999999999999987743 566799999999999999999 77643332211
Q ss_pred cCCCCCCceEEEEecCCCccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCC-CCCCcccccccccc
Q 048733 545 DSSHCSKTRRITIQRSIDDGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSP-INYLPEGVGNLFNL 623 (887)
Q Consensus 545 ~~~~~~~~r~lsi~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~~lp~~i~~L~~L 623 (887)
........||++++++..........+++++||.+.++..........+|..++.||||||++|. +.++|++|++|.||
T Consensus 518 ~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 518 QVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred cccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 11123468999999988776667788889999999998631134555679999999999999875 67999999999999
Q ss_pred ceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecc
Q 048733 624 HLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEAD 703 (887)
Q Consensus 624 ~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~ 703 (887)
|||+++++ .+..||.++.+|.+|.||++..+. ....+|..+..|++|++|.... +....+
T Consensus 598 ryL~L~~t--------~I~~LP~~l~~Lk~L~~Lnl~~~~----------~l~~~~~i~~~L~~Lr~L~l~~--s~~~~~ 657 (889)
T KOG4658|consen 598 RYLDLSDT--------GISHLPSGLGNLKKLIYLNLEVTG----------RLESIPGILLELQSLRVLRLPR--SALSND 657 (889)
T ss_pred hcccccCC--------CccccchHHHHHHhhheecccccc----------ccccccchhhhcccccEEEeec--cccccc
Confidence 99999875 589999999999999999999863 2223344455588999888111 112224
Q ss_pred hHHHHHhhccccccceeEEeccC------------------------ChhHHHHHHhcccCCcEEEEeecCCccccc--c
Q 048733 704 SQVLKELMMLRQLNMLSIRRQNG------------------------NGRDLCALIANLENVETLGVLMKSKEEILD--L 757 (887)
Q Consensus 704 ~~~~~~l~~l~~L~~L~l~~~~~------------------------~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~--l 757 (887)
.....++.+|.+|+.+.+..... ........+..+.+|+.|.+..+...+... .
T Consensus 658 ~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~ 737 (889)
T KOG4658|consen 658 KLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWE 737 (889)
T ss_pred hhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccc
Confidence 55667777777777777654111 011223445566788888888776543211 0
Q ss_pred Cccc---ccccccceeEEeec-cCCCChhhhcCCCcceeEEEecccCCcCcC-------------cCccccee-eeCcCC
Q 048733 758 QSLS---SPPQHLQYLSLRGN-MKKLPDWILKLKNLIGSRLILSGLTEDPIS-------------WFPKLRKL-VLLNFE 819 (887)
Q Consensus 758 ~~l~---~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~-------------~~~~L~~L-~l~~~~ 819 (887)
.... .++ ++..+.+.++ ....+.|....++|+.|.+.+|...+++++ .|+++..+ .+.+..
T Consensus 738 ~~~~~~~~f~-~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~ 816 (889)
T KOG4658|consen 738 ESLIVLLCFP-NLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLG 816 (889)
T ss_pred cccchhhhHH-HHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCC
Confidence 0000 022 4444444443 346677777789999999999998777665 56677777 466666
Q ss_pred CceeEEEcCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEec
Q 048733 820 AVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDM 866 (887)
Q Consensus 820 ~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 866 (887)
.+..+-...-.++.|+.+.+..||+++.+| .+.++.+.+|
T Consensus 817 ~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 817 GLPQLYWLPLSFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred CCceeEecccCccchhheehhcCcccccCc-------cccccceecc
Confidence 666665555567779999999888777655 5556666665
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-57 Score=563.74 Aligned_cols=608 Identities=22% Similarity=0.300 Sum_probs=447.8
Q ss_pred cccCccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEe---CCC---------
Q 048733 168 VEDDEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV---GKE--------- 235 (887)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---~~~--------- 235 (887)
.+...+|||++.++++..++....+++++|+|+||||+||||||+.+|+ ++..+|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccc
Confidence 3456799999999999999877667799999999999999999999999 57788988887742 111
Q ss_pred --CC-HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChhHHHHH
Q 048733 236 --YN-KNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKIDFWRDV 312 (887)
Q Consensus 236 --~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l 312 (887)
+. ...+..+++.++..... .. ... ...+++.++++|+||||||||+.+.|+.+
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~--------------------~~---~~~-~~~~~~~L~~krvLLVLDdv~~~~~l~~L 314 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKD--------------------IK---IYH-LGAMEERLKHRKVLIFIDDLDDQDVLDAL 314 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCC--------------------cc---cCC-HHHHHHHHhCCeEEEEEeCCCCHHHHHHH
Confidence 00 11233344444322110 00 001 24577889999999999999999999999
Q ss_pred HHhcCCCCCCcEEEEEccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCC
Q 048733 313 EHALLDNKKCSRIIVTTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGL 392 (887)
Q Consensus 313 ~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 392 (887)
.......++||+||||||+..++..++.. .+|+++.|+.++||+||+++||+... .++.+.+++++|+++|+|+
T Consensus 315 ~~~~~~~~~GsrIIiTTrd~~vl~~~~~~---~~~~v~~l~~~ea~~LF~~~Af~~~~---~~~~~~~l~~~iv~~c~GL 388 (1153)
T PLN03210 315 AGQTQWFGSGSRIIVITKDKHFLRAHGID---HIYEVCLPSNELALEMFCRSAFKKNS---PPDGFMELASEVALRAGNL 388 (1153)
T ss_pred HhhCccCCCCcEEEEEeCcHHHHHhcCCC---eEEEecCCCHHHHHHHHHHHhcCCCC---CcHHHHHHHHHHHHHhCCC
Confidence 87766778899999999999998765443 78999999999999999999997642 3567889999999999999
Q ss_pred chHHHHHhhhhcCCCCCHHHHHHHHHHhccccCCCCCccchHHHHhhcccCCCh-hhHHHHhhhcccCCCcccChhHHHH
Q 048733 393 PLAIVAVGGLLSTKNRIVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYYDLPH-HLKSCLLYFGLFPESCKINRGRLIR 471 (887)
Q Consensus 393 PLai~~~~~~l~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~Lp~-~~k~cf~~~s~fp~~~~i~~~~li~ 471 (887)
|||++++|+.|+.+. ..+|..+++++..... ..+..+|++||+.|++ ..|.||+++|+|+.+..++ .+.
T Consensus 389 PLAl~vlgs~L~~k~--~~~W~~~l~~L~~~~~-----~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~ 458 (1153)
T PLN03210 389 PLGLNVLGSYLRGRD--KEDWMDMLPRLRNGLD-----GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIK 458 (1153)
T ss_pred cHHHHHHHHHHcCCC--HHHHHHHHHHHHhCcc-----HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHH
Confidence 999999999999864 7899999999876432 4799999999999987 5999999999999887553 577
Q ss_pred HHHHcCccccCCCCCHHHHHHHHHHHHhhcCCeeeeecCCCCceeEEEeCHHHHHHHHHhhhhcCc-----eEEeCCCc-
Q 048733 472 LWIAEGLVQYSKRFTSEQVAAEYLDELIDRSLVQVSNREIPGRAIICHVHDLMHEIIIRKTEELGF-----SRLLNGED- 545 (887)
Q Consensus 472 ~w~a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~Hdlv~~~~~~~~~~e~~-----~~~~~~~~- 545 (887)
.|.+.+.... +..++.|+++||++... ..+.|||++|++++.+++++.- ...+....
T Consensus 459 ~~l~~~~~~~----------~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di 521 (1153)
T PLN03210 459 LLLANSDLDV----------NIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDI 521 (1153)
T ss_pred HHHHhcCCCc----------hhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHH
Confidence 7888765432 22389999999998743 1489999999999999876631 11111110
Q ss_pred ------CCCCCCceEEEEecCCCcc-c---cccCCCCceeEEEeecCCCC-----CccccccccCCC-ceeEEEEecCCC
Q 048733 546 ------SSHCSKTRRITIQRSIDDG-A---LESIKDSKVRSVILFNVDKL-----PDSFVKSCIANF-KLMKVLDLEDSP 609 (887)
Q Consensus 546 ------~~~~~~~r~lsi~~~~~~~-~---~~~~~~~~lrsL~~~~~~~~-----~~~~~~~~~~~~-~~Lr~L~L~~~~ 609 (887)
..-...++.+++....... . .....+.+|+.|.+...... ... ++.-|..+ ..||.|++.++.
T Consensus 522 ~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~-lp~~~~~lp~~Lr~L~~~~~~ 600 (1153)
T PLN03210 522 CDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWH-LPEGFDYLPPKLRLLRWDKYP 600 (1153)
T ss_pred HHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceee-cCcchhhcCcccEEEEecCCC
Confidence 1112456777776433211 1 12346788888888654310 111 22233343 469999999999
Q ss_pred CCCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhccCCcccccccc
Q 048733 610 INYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQ 689 (887)
Q Consensus 610 l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~ 689 (887)
+..+|..+ .+.+|+.|+++++ .+..+|.++..+++|+.|++++|. ....+| .++.+++|+
T Consensus 601 l~~lP~~f-~~~~L~~L~L~~s--------~l~~L~~~~~~l~~Lk~L~Ls~~~----------~l~~ip-~ls~l~~Le 660 (1153)
T PLN03210 601 LRCMPSNF-RPENLVKLQMQGS--------KLEKLWDGVHSLTGLRNIDLRGSK----------NLKEIP-DLSMATNLE 660 (1153)
T ss_pred CCCCCCcC-CccCCcEEECcCc--------cccccccccccCCCCCEEECCCCC----------CcCcCC-ccccCCccc
Confidence 99999876 5678888877764 588899989999999999999873 334555 478889999
Q ss_pred ccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccce
Q 048733 690 SLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQY 769 (887)
Q Consensus 690 ~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~ 769 (887)
+|. +.++......+..++++++|+.|++++.. ....+|..+ ++++|+.|.+++|.... .+...+.+|+.
T Consensus 661 ~L~----L~~c~~L~~lp~si~~L~~L~~L~L~~c~-~L~~Lp~~i-~l~sL~~L~Lsgc~~L~-----~~p~~~~nL~~ 729 (1153)
T PLN03210 661 TLK----LSDCSSLVELPSSIQYLNKLEDLDMSRCE-NLEILPTGI-NLKSLYRLNLSGCSRLK-----SFPDISTNISW 729 (1153)
T ss_pred EEE----ecCCCCccccchhhhccCCCCEEeCCCCC-CcCccCCcC-CCCCCCEEeCCCCCCcc-----ccccccCCcCe
Confidence 998 55544445566778899999999998521 223344433 68899999999875432 22223348999
Q ss_pred eEEeecc-CCCChhhhcCCCcceeEEEecccCC----------cCcCcCcccceeeeCcCCCceeEEEcCCCccCccEEE
Q 048733 770 LSLRGNM-KKLPDWILKLKNLIGSRLILSGLTE----------DPISWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELW 838 (887)
Q Consensus 770 L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~----------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~ 838 (887)
|+|+++. ..+|..+ .+++|++|.+.++.... .....+++|+.|.+.+|+.+..+|..++++++|+.|+
T Consensus 730 L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 730 LDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808 (1153)
T ss_pred eecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence 9998864 6788665 57888888887643211 1112356888888888888888888888888888888
Q ss_pred EccCCCCCccccccccCCCCCEEEEEechh
Q 048733 839 IGPCPLLMEIPIGIDHLRNLELLTFHDMSK 868 (887)
Q Consensus 839 l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 868 (887)
|++|..++.+|..+ ++++|+.|++++|..
T Consensus 809 Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 809 IENCINLETLPTGI-NLESLESLDLSGCSR 837 (1153)
T ss_pred CCCCCCcCeeCCCC-CccccCEEECCCCCc
Confidence 88888888888776 688888888888864
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.2e-43 Score=377.50 Aligned_cols=284 Identities=35% Similarity=0.581 Sum_probs=230.4
Q ss_pred chhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCC
Q 048733 176 IESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKH 255 (887)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~ 255 (887)
||.++++|.+.|....++.++|+|+||||+||||||.+++++..++.+|+.++|+.+++..+...++..|+.++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~- 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS- 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S-
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999976789999999999999999999999987789999999999999999999999999999977532
Q ss_pred CCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChhHHHHHHHhcCCCCCCcEEEEEccchhHH
Q 048733 256 GRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKIDFWRDVEHALLDNKKCSRIIVTTRHMNVA 335 (887)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 335 (887)
......+.+++...+++.|+++++||||||||+...|+.+...++....|++||||||+..++
T Consensus 80 -----------------~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~ 142 (287)
T PF00931_consen 80 -----------------SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVA 142 (287)
T ss_dssp -----------------TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGG
T ss_pred -----------------ccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccc
Confidence 001344678899999999999999999999999999999988888888899999999999988
Q ss_pred hhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHhhhhcCCCCCHHHHHH
Q 048733 336 KFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSTKNRIVSEWKK 415 (887)
Q Consensus 336 ~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~~w~~ 415 (887)
..+... ...+++++|+.++|++||.+.++... ....+...+.+++|+++|+|+|||++++|++|+.+. +..+|..
T Consensus 143 ~~~~~~--~~~~~l~~L~~~ea~~L~~~~~~~~~--~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~-~~~~w~~ 217 (287)
T PF00931_consen 143 GSLGGT--DKVIELEPLSEEEALELFKKRAGRKE--SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKS-TVDEWEE 217 (287)
T ss_dssp TTHHSC--EEEEECSS--HHHHHHHHHHHHTSHS------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHH-SSSSHHH
T ss_pred cccccc--cccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 776532 37899999999999999999987654 122345567899999999999999999999997665 4789999
Q ss_pred HHHHhccccCCC-CCccchHHHHhhcccCCChhhHHHHhhhcccCCCcccChhHHHHHHHHcCccccC
Q 048733 416 LFDRLGSMLGSD-PHLKDCNRVLSEGYYDLPHHLKSCLLYFGLFPESCKINRGRLIRLWIAEGLVQYS 482 (887)
Q Consensus 416 ~~~~~~~~~~~~-~~~~~i~~~l~~sy~~Lp~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~ 482 (887)
+++++....... .....+..++.+||+.||+++|.||+|||+||+++.|+++.++++|+++|||...
T Consensus 218 ~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 218 ALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 998877665432 2357899999999999999999999999999999999999999999999999754
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=5.2e-23 Score=217.12 Aligned_cols=301 Identities=21% Similarity=0.215 Sum_probs=231.0
Q ss_pred CCCCceEEEEecCC-CccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCcccccccccccee
Q 048733 548 HCSKTRRITIQRSI-DDGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLL 626 (887)
Q Consensus 548 ~~~~~r~lsi~~~~-~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 626 (887)
.++++.||++..+. ....-+..+++.||++.+..+..-+..+ |.-+..+..|.+|||++|.+.+.|..+.+-+++-.|
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGi-P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGI-PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCC-CchhcccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 35677888887554 3444567789999999998876643344 444567999999999999999999999999999999
Q ss_pred ecCCCc----------------eeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhc-cCCcccccccc
Q 048733 627 NARNTK----------------ILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKI-HRGFGSLRGLQ 689 (887)
Q Consensus 627 ~L~~~~----------------~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-p~~i~~L~~L~ 689 (887)
+|++|. .||||+|.+..||+.+..|.+|+.|.|++| .+... -..+-+|++|+
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N-----------PL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN-----------PLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC-----------hhhHHHHhcCccchhhh
Confidence 999987 889999999999999999999999999987 21111 12244567777
Q ss_pred ccccccccCceec-chHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccc
Q 048733 690 SLRGLLALPTIEA-DSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQ 768 (887)
Q Consensus 690 ~L~~~~~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~ 768 (887)
+|+ +++..- -...+..+..|.||+.++++.| ....+|..+.++.+|+.|++++|...+.. .......+|+
T Consensus 201 vLh----ms~TqRTl~N~Ptsld~l~NL~dvDlS~N--~Lp~vPecly~l~~LrrLNLS~N~iteL~---~~~~~W~~lE 271 (1255)
T KOG0444|consen 201 VLH----MSNTQRTLDNIPTSLDDLHNLRDVDLSEN--NLPIVPECLYKLRNLRRLNLSGNKITELN---MTEGEWENLE 271 (1255)
T ss_pred hhh----cccccchhhcCCCchhhhhhhhhcccccc--CCCcchHHHhhhhhhheeccCcCceeeee---ccHHHHhhhh
Confidence 776 333222 2335667788899999999875 34457889999999999999988654421 1111223899
Q ss_pred eeEEeecc-CCCChhhhcCCCcceeEEEecccCCcCc-C---cCcccceeeeCcCCCceeEEEcCCCccCccEEEEccCC
Q 048733 769 YLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDPI-S---WFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCP 843 (887)
Q Consensus 769 ~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~-~---~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~ 843 (887)
+|+++.|. ..+|..+..|+.|++|.+.+|+++-+.+ + .+.+|+.+...+ ..++-+|..+..++.|+.|.|+.|.
T Consensus 272 tLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 272 TLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred hhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccc
Confidence 99999874 7899999999999999999999876533 3 344555555554 3477778888899999999998665
Q ss_pred CCCccccccccCCCCCEEEEEechhhhh
Q 048733 844 LLMEIPIGIDHLRNLELLTFHDMSKQVC 871 (887)
Q Consensus 844 ~l~~lp~~~~~l~~L~~L~l~~c~~~~~ 871 (887)
+-.+|.+|.-++.|+.|++.+||+.++
T Consensus 351 -LiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 351 -LITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred -eeechhhhhhcCCcceeeccCCcCccC
Confidence 778999999999999999999997665
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=6.7e-21 Score=237.54 Aligned_cols=299 Identities=22% Similarity=0.241 Sum_probs=164.5
Q ss_pred CCceEEEEecCCCccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCC-CCccccccccccceeec
Q 048733 550 SKTRRITIQRSIDDGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPIN-YLPEGVGNLFNLHLLNA 628 (887)
Q Consensus 550 ~~~r~lsi~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~L 628 (887)
..+|++.+.++..........+++|++|.+.++.. ....+..+.++++|++|+|++|.+. .+|..++++++|++|+|
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~--~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNML--SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCcc--cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 45666666655432222223466777777766654 2234455667777777777777765 56777777777777777
Q ss_pred CCCc----------------eeeecCcccc-ccchhhhcccccCeeeecccccccccccchhhhhhccCCcccccccccc
Q 048733 629 RNTK----------------ILDLAHTFVS-ELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSL 691 (887)
Q Consensus 629 ~~~~----------------~Ldl~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L 691 (887)
++|. +|+|++|.+. .+|..+.++++|++|++++|. ....+|..++++++|++|
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~----------l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN----------LTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce----------eccccChhHhCCCCCCEE
Confidence 7664 5566666544 566667777777777776652 122445556666666666
Q ss_pred ccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeE
Q 048733 692 RGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLS 771 (887)
Q Consensus 692 ~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~ 771 (887)
. +..+.+....+..+.++++|+.|+++++.. ...++..+.++++|+.|++.+|...+... ..+...+ +|+.|+
T Consensus 266 ~----L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~-~L~~L~ 338 (968)
T PLN00113 266 F----LYQNKLSGPIPPSIFSLQKLISLDLSDNSL-SGEIPELVIQLQNLEILHLFSNNFTGKIP-VALTSLP-RLQVLQ 338 (968)
T ss_pred E----CcCCeeeccCchhHhhccCcCEEECcCCee-ccCCChhHcCCCCCcEEECCCCccCCcCC-hhHhcCC-CCCEEE
Confidence 5 444444444455555666666666654221 11234445555566666665554332211 1122222 555555
Q ss_pred Eeecc--CCCChhhhcCCCcceeEEEecccCCcC---------------------------cCcCcccceeeeCcCCCce
Q 048733 772 LRGNM--KKLPDWILKLKNLIGSRLILSGLTEDP---------------------------ISWFPKLRKLVLLNFEAVK 822 (887)
Q Consensus 772 L~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~~~---------------------------~~~~~~L~~L~l~~~~~l~ 822 (887)
+++|. +.+|.+++.+++|+.|+|++|.+.... +..+++|+.|.+.+|....
T Consensus 339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 55442 244555555555555555555443211 1134555555555554333
Q ss_pred eEEEcCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 823 SVIIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 823 ~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
.+|..+..+|+|+.|++++|.....+|..+..+++|+.|++++|.
T Consensus 419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 444445556666666666666555555555666677777766664
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=2.3e-20 Score=232.76 Aligned_cols=298 Identities=21% Similarity=0.253 Sum_probs=203.5
Q ss_pred CCceEEEEecCCCc--cccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCC-CCcccccccccccee
Q 048733 550 SKTRRITIQRSIDD--GALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPIN-YLPEGVGNLFNLHLL 626 (887)
Q Consensus 550 ~~~r~lsi~~~~~~--~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L 626 (887)
..++.|.+..+... .......+++|++|.+.++... ..++...+.++++|++|+|++|.+. .+|. +.+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~-~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS-GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC-CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 35777777765432 2223456888999998887642 2344455668889999999988876 4453 567888888
Q ss_pred ecCCCc----------------eeeecCcccc-ccchhhhcccccCeeeecccccccccccchhhhhhccCCcccccccc
Q 048733 627 NARNTK----------------ILDLAHTFVS-ELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQ 689 (887)
Q Consensus 627 ~L~~~~----------------~Ldl~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~ 689 (887)
+|++|. +|++++|.+. .+|..+.++++|++|++++|. ....+|..++++++|+
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~----------l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ----------LVGQIPRELGQMKSLK 215 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC----------CcCcCChHHcCcCCcc
Confidence 888775 6666666543 566677777777777777662 2234566677777777
Q ss_pred ccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccce
Q 048733 690 SLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQY 769 (887)
Q Consensus 690 ~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~ 769 (887)
+|. ++.+......+..++++++|+.|+++++.. ...++..+.++++|+.|++++|...+..+ ..+.... +|+.
T Consensus 216 ~L~----L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~-~L~~ 288 (968)
T PLN00113 216 WIY----LGYNNLSGEIPYEIGGLTSLNHLDLVYNNL-TGPIPSSLGNLKNLQYLFLYQNKLSGPIP-PSIFSLQ-KLIS 288 (968)
T ss_pred EEE----CcCCccCCcCChhHhcCCCCCEEECcCcee-ccccChhHhCCCCCCEEECcCCeeeccCc-hhHhhcc-CcCE
Confidence 777 556666666666777778888887775322 22356677777888888877765433221 2222233 7888
Q ss_pred eEEeecc--CCCChhhhcCCCcceeEEEecccCCcC---cCcCcccceeeeCcCCCceeEEEcCCCccCccEEEEccCCC
Q 048733 770 LSLRGNM--KKLPDWILKLKNLIGSRLILSGLTEDP---ISWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPL 844 (887)
Q Consensus 770 L~L~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~ 844 (887)
|+|++|. +.+|.++..+++|+.|+|++|.+.... +..+++|+.|.+.++.....+|...+.+++|+.|++++|..
T Consensus 289 L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred EECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 8887763 467777888888888888888776543 33677888888887765556666677788888888888876
Q ss_pred CCccccccccCCCCCEEEEEech
Q 048733 845 LMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 845 l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
...+|..+..+++|+.|++++|+
T Consensus 369 ~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 369 TGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred EeeCChhHhCcCCCCEEECcCCE
Confidence 66778777788888888888775
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=1.4e-22 Score=213.85 Aligned_cols=296 Identities=17% Similarity=0.190 Sum_probs=244.3
Q ss_pred CCceEEEEecCCC-ccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCC--CCcccccccccccee
Q 048733 550 SKTRRITIQRSID-DGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPIN--YLPEGVGNLFNLHLL 626 (887)
Q Consensus 550 ~~~r~lsi~~~~~-~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~--~lp~~i~~L~~L~~L 626 (887)
...+.|.+..... +.+.+...+.+|..|.+..+... .+..-++.++.||.+++..|++. .+|..|.+|..|..|
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~---~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~l 108 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI---SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTIL 108 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH---hhhhhhccchhhHHHhhhccccccCCCCchhcccccceee
Confidence 3456666665543 44545667888888888877652 23455788999999999999987 899999999999999
Q ss_pred ecCCCc---------------eeeecCccccccchhhh-cccccCeeeecccccccccccchhhhhhccCCccccccccc
Q 048733 627 NARNTK---------------ILDLAHTFVSELPEEIR-NLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQS 690 (887)
Q Consensus 627 ~L~~~~---------------~Ldl~~~~l~~lp~~i~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~ 690 (887)
+|+.|. +|+||+|+|.++|..++ +|+.|-+|+|++| .+..+|+.+..|.+||+
T Consensus 109 DLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-----------rLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 109 DLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-----------RLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred ecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-----------hhhhcCHHHHHHhhhhh
Confidence 999987 99999999999999877 9999999999998 78899999999999999
Q ss_pred cccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCccccccccccee
Q 048733 691 LRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYL 770 (887)
Q Consensus 691 L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L 770 (887)
|. ++++.....-...+-.|+.|..|.+++.+.+...+|.++..+.+|..+++++|+.... +.......+|+.|
T Consensus 178 L~----Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v---Pecly~l~~LrrL 250 (1255)
T KOG0444|consen 178 LK----LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV---PECLYKLRNLRRL 250 (1255)
T ss_pred hh----cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc---hHHHhhhhhhhee
Confidence 99 8888887777788888888999999986666777889999999999999998865443 2222222399999
Q ss_pred EEeecc-CCCChhhhcCCCcceeEEEecccCCcCc--CcCcccceeeeCcCCC-ceeEEEcCCCccCccEEEEccCCCCC
Q 048733 771 SLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDPI--SWFPKLRKLVLLNFEA-VKSVIIEKGAMPDIRELWIGPCPLLM 846 (887)
Q Consensus 771 ~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~--~~~~~L~~L~l~~~~~-l~~~~~~~~~lp~L~~L~l~~c~~l~ 846 (887)
+|++|. ..+....+.-.+|++|+|+.|+++..|- ..+++|+.|.+.++.- .+.+|..+|.+.+|+.+...+|. +.
T Consensus 251 NLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LE 329 (1255)
T KOG0444|consen 251 NLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LE 329 (1255)
T ss_pred ccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cc
Confidence 999984 6666666667899999999999987653 3788999998887642 46789999999999999998775 99
Q ss_pred ccccccccCCCCCEEEEEech
Q 048733 847 EIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 847 ~lp~~~~~l~~L~~L~l~~c~ 867 (887)
.+|.++..|+.|+.|.+++|.
T Consensus 330 lVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 330 LVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred cCchhhhhhHHHHHhcccccc
Confidence 999999999999999999885
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=1.5e-18 Score=182.96 Aligned_cols=276 Identities=22% Similarity=0.252 Sum_probs=172.7
Q ss_pred CCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCc----------------ee
Q 048733 571 DSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTK----------------IL 634 (887)
Q Consensus 571 ~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~----------------~L 634 (887)
.+..++|.+.++.. .++-..+|.++++|+.+++..|.++.+|...+...||+.|+|..|. +|
T Consensus 77 p~~t~~LdlsnNkl--~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKL--SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred ccceeeeecccccc--ccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 45688899998876 3444577899999999999999999999888888899999999986 89
Q ss_pred eecCccccccchh-hhcccccCeeeecccccccccccchhhhhhccC-CccccccccccccccccCceecchHHHHHhhc
Q 048733 635 DLAHTFVSELPEE-IRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHR-GFGSLRGLQSLRGLLALPTIEADSQVLKELMM 712 (887)
Q Consensus 635 dl~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~-~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~ 712 (887)
|||.|.|.++|.. +..-.++++|+|++| .+..+-. .|.+|.+|-+|. ++.+.++.-.+..+.+
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N-----------~It~l~~~~F~~lnsL~tlk----LsrNrittLp~r~Fk~ 219 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASN-----------RITTLETGHFDSLNSLLTLK----LSRNRITTLPQRSFKR 219 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccc-----------cccccccccccccchheeee----cccCcccccCHHHhhh
Confidence 9999999988864 445688999999987 2333322 255555666655 5555555555566666
Q ss_pred cccccceeEEeccCChh------HHH-----------------HHHhcccCCcEEEEeecCCccc---------------
Q 048733 713 LRQLNMLSIRRQNGNGR------DLC-----------------ALIANLENVETLGVLMKSKEEI--------------- 754 (887)
Q Consensus 713 l~~L~~L~l~~~~~~~~------~l~-----------------~~l~~~~~L~~L~l~~~~~~~~--------------- 754 (887)
|++|+.|++..|..... .++ ..+..+.++++|++..|.....
T Consensus 220 L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 220 LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhc
Confidence 66666665554211000 000 1122233444444444322111
Q ss_pred --------cccCcccccccccceeEEeecc-CCCC-hhhhcCCCcceeEEEecccCC---cCcCcCcccceeeeCcCCCc
Q 048733 755 --------LDLQSLSSPPQHLQYLSLRGNM-KKLP-DWILKLKNLIGSRLILSGLTE---DPISWFPKLRKLVLLNFEAV 821 (887)
Q Consensus 755 --------~~l~~l~~~~~~L~~L~L~~~~-~~lp-~~~~~l~~L~~L~L~~~~l~~---~~~~~~~~L~~L~l~~~~~l 821 (887)
+..+++...+ +|+.|+|+.|. ..++ ..+..|..|+.|+|+.|.+.. ..+.++++|++|+|.++.-
T Consensus 300 lS~NaI~rih~d~Wsftq-kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l- 377 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSWSFTQ-KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL- 377 (873)
T ss_pred cchhhhheeecchhhhcc-cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE-
Confidence 1112222222 55555555432 3332 223344455555555554332 1223667777777776541
Q ss_pred eeEEEc-----CCCccCccEEEEccCCCCCcccc-ccccCCCCCEEEEEech
Q 048733 822 KSVIIE-----KGAMPDIRELWIGPCPLLMEIPI-GIDHLRNLELLTFHDMS 867 (887)
Q Consensus 822 ~~~~~~-----~~~lp~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~ 867 (887)
.|..+ +..||+|++|.+.+|+ ++.+|. .+..+++|++|++.+|+
T Consensus 378 -s~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 378 -SWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred -EEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCc
Confidence 23222 3458999999999887 788776 77889999999999987
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.70 E-value=3.1e-18 Score=180.47 Aligned_cols=303 Identities=18% Similarity=0.214 Sum_probs=200.7
Q ss_pred CceEEEEecCCCccccc-cCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCcc-ccccccccceeec
Q 048733 551 KTRRITIQRSIDDGALE-SIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPE-GVGNLFNLHLLNA 628 (887)
Q Consensus 551 ~~r~lsi~~~~~~~~~~-~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L 628 (887)
++..+.+..+.....+. .....++..|.+..+.. ..+-...++-++.||+|||+.|.|.++|. ++..-.++++|+|
T Consensus 103 nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I--~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 103 NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLI--SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNL 180 (873)
T ss_pred cceeeeeccchhhhcccccccccceeEEeeecccc--ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEee
Confidence 44455555444332223 23455677887777655 23334556778889999999999888874 4556678999999
Q ss_pred CCCc----------------eeeecCccccccchhhh-cccccCeeeeccccc--cccccc---c--------hhhhhhc
Q 048733 629 RNTK----------------ILDLAHTFVSELPEEIR-NLKKLRSLIVFHYKY--ITGSII---P--------TEAAAKI 678 (887)
Q Consensus 629 ~~~~----------------~Ldl~~~~l~~lp~~i~-~l~~L~~L~l~~~~~--~~~~~~---~--------~~~~~~~ 678 (887)
++|+ +|.|+.|.++.+|.-.. +|++|+.|+|..|.- ..|..| + .+....+
T Consensus 181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL 260 (873)
T ss_pred ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence 9887 88889999999998666 599999999998720 001000 0 0011122
Q ss_pred cCC-ccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCcccccc
Q 048733 679 HRG-FGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDL 757 (887)
Q Consensus 679 p~~-i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l 757 (887)
.+| |-.|.++++|+ +..+.+..-....+-+|+.|+.|+++.|.... .-+......++|+.|++++|.......
T Consensus 261 ~DG~Fy~l~kme~l~----L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r-ih~d~WsftqkL~~LdLs~N~i~~l~~- 334 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLN----LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR-IHIDSWSFTQKLKELDLSSNRITRLDE- 334 (873)
T ss_pred cCcceeeecccceee----cccchhhhhhcccccccchhhhhccchhhhhe-eecchhhhcccceeEeccccccccCCh-
Confidence 222 23344444444 44444433344445677888888888642211 113445567889999999886554321
Q ss_pred CcccccccccceeEEeecc-CCCCh-hhhcCCCcceeEEEecccCC------cCcCcCcccceeeeCcCCCceeEEE-cC
Q 048733 758 QSLSSPPQHLQYLSLRGNM-KKLPD-WILKLKNLIGSRLILSGLTE------DPISWFPKLRKLVLLNFEAVKSVII-EK 828 (887)
Q Consensus 758 ~~l~~~~~~L~~L~L~~~~-~~lp~-~~~~l~~L~~L~L~~~~l~~------~~~~~~~~L~~L~l~~~~~l~~~~~-~~ 828 (887)
.++.... .|+.|+|+.|. ..+.+ .|..+++|++|+|+.|.+.. .++.++++|+.|.+.++. ++.++. .+
T Consensus 335 ~sf~~L~-~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAf 412 (873)
T KOG4194|consen 335 GSFRVLS-QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAF 412 (873)
T ss_pred hHHHHHH-HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhh
Confidence 2333333 89999999874 44443 35578999999999998643 245589999999999964 777754 46
Q ss_pred CCccCccEEEEccCCCCCccccccccCCCCCEEEEE
Q 048733 829 GAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFH 864 (887)
Q Consensus 829 ~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 864 (887)
..+++||+|+|.+|..-..-|..+.++ .|++|.+.
T Consensus 413 sgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 413 SGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 779999999999999666678888888 89888654
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.68 E-value=1.2e-16 Score=199.24 Aligned_cols=273 Identities=21% Similarity=0.235 Sum_probs=179.1
Q ss_pred CceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCc---------------eeee
Q 048733 572 SKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTK---------------ILDL 636 (887)
Q Consensus 572 ~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~---------------~Ldl 636 (887)
.+||.|.+.++.. ..++..| .+.+|+.|+|.+|.+..+|..+..+++|++|+|+++. +|+|
T Consensus 589 ~~Lr~L~~~~~~l---~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L 664 (1153)
T PLN03210 589 PKLRLLRWDKYPL---RCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKL 664 (1153)
T ss_pred cccEEEEecCCCC---CCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEe
Confidence 4588888776543 2333444 4688999999999988888888899999999998753 7777
Q ss_pred cCc-cccccchhhhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhcccc
Q 048733 637 AHT-FVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQ 715 (887)
Q Consensus 637 ~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~ 715 (887)
++| .+..+|..+.++++|++|++++|. ....+|.++ ++++|+.|. ++++......+. ..++
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~----------~L~~Lp~~i-~l~sL~~L~----Lsgc~~L~~~p~---~~~n 726 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCE----------NLEILPTGI-NLKSLYRLN----LSGCSRLKSFPD---ISTN 726 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCC----------CcCccCCcC-CCCCCCEEe----CCCCCCcccccc---ccCC
Confidence 776 677888888888889999888873 345666655 677777776 333322111111 2356
Q ss_pred ccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCcccc----ccC-cccccccccceeEEeecc--CCCChhhhcCCC
Q 048733 716 LNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEIL----DLQ-SLSSPPQHLQYLSLRGNM--KKLPDWILKLKN 788 (887)
Q Consensus 716 L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~----~l~-~l~~~~~~L~~L~L~~~~--~~lp~~~~~l~~ 788 (887)
|+.|++..+. ...+|..+ .+++|+.|.+..+...... .+. .....+++|+.|+|++|. ..+|.+++++++
T Consensus 727 L~~L~L~~n~--i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~ 803 (1153)
T PLN03210 727 ISWLDLDETA--IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803 (1153)
T ss_pred cCeeecCCCc--cccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCC
Confidence 6777776532 12233332 4566776666543211110 000 011122378888887763 567877778888
Q ss_pred cceeEEEecc-cCCcCcC-cCcccceeeeCcCCCce--------------------eEEEcCCCccCccEEEEccCCCCC
Q 048733 789 LIGSRLILSG-LTEDPIS-WFPKLRKLVLLNFEAVK--------------------SVIIEKGAMPDIRELWIGPCPLLM 846 (887)
Q Consensus 789 L~~L~L~~~~-l~~~~~~-~~~~L~~L~l~~~~~l~--------------------~~~~~~~~lp~L~~L~l~~c~~l~ 846 (887)
|+.|+|++|. +...|.. .+++|+.|.+.+|..+. .+|..++.+++|+.|++++|+.++
T Consensus 804 L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 804 LEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred CCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcC
Confidence 8888887775 3332221 46666777766665443 344445668889999999999999
Q ss_pred ccccccccCCCCCEEEEEechhh
Q 048733 847 EIPIGIDHLRNLELLTFHDMSKQ 869 (887)
Q Consensus 847 ~lp~~~~~l~~L~~L~l~~c~~~ 869 (887)
.+|..+..+++|+.+++++|+..
T Consensus 884 ~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 884 RVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred ccCcccccccCCCeeecCCCccc
Confidence 99888888899999999998743
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=3.8e-18 Score=172.25 Aligned_cols=255 Identities=20% Similarity=0.239 Sum_probs=148.7
Q ss_pred ccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCc----------------eeeecCccccccchhhhccccc
Q 048733 591 KSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTK----------------ILDLAHTFVSELPEEIRNLKKL 654 (887)
Q Consensus 591 ~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~----------------~Ldl~~~~l~~lp~~i~~l~~L 654 (887)
|.-++.+..|..|+|..|++..+| +|..+..|..|.+..|. +|||++|+++++|.+++.+.+|
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL 277 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSL 277 (565)
T ss_pred ChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhh
Confidence 334444555555555555555555 44555555544444443 9999999999999999999999
Q ss_pred CeeeecccccccccccchhhhhhccCCccccccccccccccccCceecch--------HHHHHhh---------------
Q 048733 655 RSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADS--------QVLKELM--------------- 711 (887)
Q Consensus 655 ~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~--------~~~~~l~--------------- 711 (887)
.+|++++| ....+|..+|+| +|..|. +.++.... ...+.+.
T Consensus 278 ~rLDlSNN-----------~is~Lp~sLgnl-hL~~L~----leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se 341 (565)
T KOG0472|consen 278 ERLDLSNN-----------DISSLPYSLGNL-HLKFLA----LEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE 341 (565)
T ss_pred hhhcccCC-----------ccccCCcccccc-eeeehh----hcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence 99999998 677888889998 787776 44554411 1111111
Q ss_pred ------------------ccccccceeEEeccCChhHHHHHHhc---ccCCcEEEEeecCCcccc---------------
Q 048733 712 ------------------MLRQLNMLSIRRQNGNGRDLCALIAN---LENVETLGVLMKSKEEIL--------------- 755 (887)
Q Consensus 712 ------------------~l~~L~~L~l~~~~~~~~~l~~~l~~---~~~L~~L~l~~~~~~~~~--------------- 755 (887)
.+.+.+.|+++..+.. .+|..... -.-....+++.|...+..
T Consensus 342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt--~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~l 419 (565)
T KOG0472|consen 342 GGTETAMTLPSESFPDIYAIITTKILDVSDKQLT--LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVL 419 (565)
T ss_pred ccccccCCCCCCcccchhhhhhhhhhcccccccc--cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHh
Confidence 1122333333320000 00111111 111333444443221110
Q ss_pred -----cc--CcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcCcC--cCcccceeeeCcCCCceeEE
Q 048733 756 -----DL--QSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDPIS--WFPKLRKLVLLNFEAVKSVI 825 (887)
Q Consensus 756 -----~l--~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~L~~L~l~~~~~l~~~~ 825 (887)
.+ ..+...+ +|..|+|++|. ..+|..++.+..|+.|+|+.|++...|-. ....|+.+-.++ ..+..++
T Consensus 420 snn~isfv~~~l~~l~-kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~-nqi~~vd 497 (565)
T KOG0472|consen 420 SNNKISFVPLELSQLQ-KLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASN-NQIGSVD 497 (565)
T ss_pred hcCccccchHHHHhhh-cceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcc-ccccccC
Confidence 00 1112222 66667777664 56777777776677777777765443211 122222222222 2355554
Q ss_pred Ec-CCCccCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 826 IE-KGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 826 ~~-~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
.. .++|.+|..|++.+|. +..+|.++++|++|++|.++|+|
T Consensus 498 ~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCc
Confidence 44 7789999999998887 88999999999999999999999
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.55 E-value=3.3e-17 Score=165.60 Aligned_cols=244 Identities=21% Similarity=0.261 Sum_probs=196.7
Q ss_pred ccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeeccccccccccc
Q 048733 591 KSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSII 670 (887)
Q Consensus 591 ~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 670 (887)
..-+.++..|.||++.++.+..+|.+|+.+..+..|+.+.| ++.++|+.+.++.+|++|+.+.+
T Consensus 61 ~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n--------~ls~lp~~i~s~~~l~~l~~s~n-------- 124 (565)
T KOG0472|consen 61 REDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN--------KLSELPEQIGSLISLVKLDCSSN-------- 124 (565)
T ss_pred cHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc--------hHhhccHHHhhhhhhhhhhcccc--------
Confidence 34567888999999999999999999999999998887764 68999999999999999999987
Q ss_pred chhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecC
Q 048733 671 PTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKS 750 (887)
Q Consensus 671 ~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 750 (887)
....+|++|+.+-.|..|+ ...+.+ ...+..+.++.+|.+|.+.++ ...++++...+++.|++|+...|.
T Consensus 125 ---~~~el~~~i~~~~~l~dl~----~~~N~i-~slp~~~~~~~~l~~l~~~~n--~l~~l~~~~i~m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 125 ---ELKELPDSIGRLLDLEDLD----ATNNQI-SSLPEDMVNLSKLSKLDLEGN--KLKALPENHIAMKRLKHLDCNSNL 194 (565)
T ss_pred ---ceeecCchHHHHhhhhhhh----cccccc-ccCchHHHHHHHHHHhhcccc--chhhCCHHHHHHHHHHhcccchhh
Confidence 6788999999999999988 323333 445677788888888888764 344456666669999999987764
Q ss_pred CccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcCcC---cCcccceeeeCcCCCceeEEE
Q 048733 751 KEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDPIS---WFPKLRKLVLLNFEAVKSVII 826 (887)
Q Consensus 751 ~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~~---~~~~L~~L~l~~~~~l~~~~~ 826 (887)
.... + +.+.... +|.-|+|..|. ..+| .|..|+.|..|+++.|.+...+.. .+++|..|++.++ .++++|.
T Consensus 195 L~tl-P-~~lg~l~-~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pd 269 (565)
T KOG0472|consen 195 LETL-P-PELGGLE-SLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPD 269 (565)
T ss_pred hhcC-C-hhhcchh-hhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCch
Confidence 3322 1 2333333 78888887764 6788 688899999999999988765433 6788888888886 4888999
Q ss_pred cCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 827 EKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 827 ~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
+..-+.+|++|++++|. +..+|..++++ .|+.|.+.|+|
T Consensus 270 e~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 98889999999999887 88999999999 99999999999
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=3.4e-16 Score=174.41 Aligned_cols=99 Identities=25% Similarity=0.315 Sum_probs=48.4
Q ss_pred ccceeEEeec-cCCCChh-hhcCCCcceeEEEecccCCcC--cCcCcccceeeeCcCCCceeEEEcCCCccCccEEEEcc
Q 048733 766 HLQYLSLRGN-MKKLPDW-ILKLKNLIGSRLILSGLTEDP--ISWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGP 841 (887)
Q Consensus 766 ~L~~L~L~~~-~~~lp~~-~~~l~~L~~L~L~~~~l~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~ 841 (887)
+|+.|+|++| +..+|.. +.+++.|+.|+|++|+++..+ +..++.|++|...++ .+...| ++..+|.|+.++++.
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLDLSC 461 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEeccc
Confidence 4444444443 2334432 223444444444444443322 113334444433332 133444 566778888888875
Q ss_pred CCCCCc--cccccccCCCCCEEEEEechh
Q 048733 842 CPLLME--IPIGIDHLRNLELLTFHDMSK 868 (887)
Q Consensus 842 c~~l~~--lp~~~~~l~~L~~L~l~~c~~ 868 (887)
|. ++. +|..... |+|++|+++||+.
T Consensus 462 N~-L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 462 NN-LSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred ch-hhhhhhhhhCCC-cccceeeccCCcc
Confidence 54 442 3333222 6888888888873
No 14
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.49 E-value=6.1e-12 Score=156.46 Aligned_cols=306 Identities=16% Similarity=0.194 Sum_probs=183.6
Q ss_pred ccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeC-CCCCHHHHHHHHHHHHh
Q 048733 172 EVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVG-KEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~-~~~~~~~~~~~i~~~l~ 250 (887)
.+|-|..-.+++ ... ...+++.|+|++|.||||++..+.+. +..++|+++. .+.++..++..++..+.
T Consensus 15 ~~~~R~rl~~~l----~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 15 NTVVRERLLAKL----SGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred ccCcchHHHHHH----hcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 455565444444 332 34679999999999999999998862 2268999996 45567788888888886
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhC--CCceEEEEeccCCh--hHHHHHHHh-cCCCCCCcEE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLK--DKSYMVVLDDVWKI--DFWRDVEHA-LLDNKKCSRI 325 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~--~~~~~l~~~-l~~~~~gs~i 325 (887)
........... ...+.....+...+...+...+. +.+++|||||+... ......... +.....+.++
T Consensus 84 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~l 155 (903)
T PRK04841 84 QATNGHCSKSE--------ALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTL 155 (903)
T ss_pred HhcCcccchhh--------hhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEE
Confidence 43221000000 00000011123344444444443 57899999999543 233333333 3444567789
Q ss_pred EEEccchhHHhh--hccCCCcceeecC----CCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 048733 326 IVTTRHMNVAKF--CKLSSSVRIHELE----TLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAV 399 (887)
Q Consensus 326 ivTtR~~~v~~~--~~~~~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 399 (887)
|||||...-... ..... ....+. +|+.+|+.++|....... -..+...+|.+.|+|.|+++..+
T Consensus 156 v~~sR~~~~~~~~~l~~~~--~~~~l~~~~l~f~~~e~~~ll~~~~~~~--------~~~~~~~~l~~~t~Gwp~~l~l~ 225 (903)
T PRK04841 156 VVLSRNLPPLGIANLRVRD--QLLEIGSQQLAFDHQEAQQFFDQRLSSP--------IEAAESSRLCDDVEGWATALQLI 225 (903)
T ss_pred EEEeCCCCCCchHhHHhcC--cceecCHHhCCCCHHHHHHHHHhccCCC--------CCHHHHHHHHHHhCChHHHHHHH
Confidence 999998421111 11111 344455 999999999998764221 12456788999999999999998
Q ss_pred hhhhcCCCCCHHHHHHHHHHhccccCCCCCccchHHHHh-hcccCCChhhHHHHhhhcccCCCcccChhHHHHHHHHcCc
Q 048733 400 GGLLSTKNRIVSEWKKLFDRLGSMLGSDPHLKDCNRVLS-EGYYDLPHHLKSCLLYFGLFPESCKINRGRLIRLWIAEGL 478 (887)
Q Consensus 400 ~~~l~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~-~sy~~Lp~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~ 478 (887)
+..+.....+... .... +... ....+...+. ..++.||++.+.++...|+++ .++.+ +.. .+
T Consensus 226 ~~~~~~~~~~~~~---~~~~----~~~~-~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~-----~l 288 (903)
T PRK04841 226 ALSARQNNSSLHD---SARR----LAGI-NASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIV-----RV 288 (903)
T ss_pred HHHHhhCCCchhh---hhHh----hcCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHH-----HH
Confidence 8776543321111 1111 1110 0123444433 347899999999999999997 33322 222 11
Q ss_pred cccCCCCCHHHHHHHHHHHHhhcCCeeeeecCCCCceeEEEeCHHHHHHHHHhhh
Q 048733 479 VQYSKRFTSEQVAAEYLDELIDRSLVQVSNREIPGRAIICHVHDLMHEIIIRKTE 533 (887)
Q Consensus 479 i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~Hdlv~~~~~~~~~ 533 (887)
.. .+.+...+++|.+.+++...... . ..+|+.|++++++++....
T Consensus 289 ~~-------~~~~~~~L~~l~~~~l~~~~~~~-~--~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 289 TG-------EENGQMRLEELERQGLFIQRMDD-S--GEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred cC-------CCcHHHHHHHHHHCCCeeEeecC-C--CCEEehhHHHHHHHHHHHH
Confidence 11 11246779999999997543211 1 1368899999999988753
No 15
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=2.2e-10 Score=127.61 Aligned_cols=318 Identities=15% Similarity=0.145 Sum_probs=185.1
Q ss_pred ccCccccchhcHHHHHHHHhcC--CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHH
Q 048733 169 EDDEVVGIESIKDKLIDLMLNG--RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTII 246 (887)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 246 (887)
.+..++||++++++|...+... ......+.|+|++|+|||++++.++++.......-..+++++....+...++..|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 4567999999999999998553 22345678999999999999999998633222223456777777777888999999
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhC--CCceEEEEeccCChh------HHHHHHHhcCC
Q 048733 247 KEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLK--DKSYMVVLDDVWKID------FWRDVEHALLD 318 (887)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~------~~~~l~~~l~~ 318 (887)
.++..... + ....+.+++...+.+.+. +++.+||||+++... .+..+...+..
T Consensus 108 ~~l~~~~~-----------------~--~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~ 168 (394)
T PRK00411 108 RQLFGHPP-----------------P--SSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE 168 (394)
T ss_pred HHhcCCCC-----------------C--CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc
Confidence 88864211 0 112345677777777775 456899999997642 23333332222
Q ss_pred CCCCcE--EEEEccchhHHhhhc----cCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCC-hHHHHHHHHHHHHhCC
Q 048733 319 NKKCSR--IIVTTRHMNVAKFCK----LSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCP-SELKELSQDILAKCGG 391 (887)
Q Consensus 319 ~~~gs~--iivTtR~~~v~~~~~----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~-~~~~~~~~~I~~~c~G 391 (887)
. .+++ +|.++....+..... ..-....+.+++++.++..+++..++-....+.... ..++.+++......|.
T Consensus 169 ~-~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 169 Y-PGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred c-CCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 2 2333 455555443322211 111125789999999999999998763221111112 2233333333333455
Q ss_pred CchHHHHHhhhh--c--C-C-CCCHHHHHHHHHHhccccCCCCCccchHHHHhhcccCCChhhHHHHhhhcccCC--Ccc
Q 048733 392 LPLAIVAVGGLL--S--T-K-NRIVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYYDLPHHLKSCLLYFGLFPE--SCK 463 (887)
Q Consensus 392 ~PLai~~~~~~l--~--~-~-~~~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~Lp~~~k~cf~~~s~fp~--~~~ 463 (887)
.+.|+..+-... + . . .-+.++...+.+... .....-.+..||.+.|..+..++..-+ ...
T Consensus 248 ~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~ 315 (394)
T PRK00411 248 ARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDE 315 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCc
Confidence 677766654321 1 1 1 124556666655441 122345678999999888777664322 133
Q ss_pred cChhHHHHHH--HHcCccccCCCCCHHHHHHHHHHHHhhcCCeeeeec--CCCCceeEEEeC
Q 048733 464 INRGRLIRLW--IAEGLVQYSKRFTSEQVAAEYLDELIDRSLVQVSNR--EIPGRAIICHVH 521 (887)
Q Consensus 464 i~~~~li~~w--~a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~--~~~~~~~~~~~H 521 (887)
+....+.... +++.+-. .. .......+|+..|...+++..... +..|+.+.++++
T Consensus 316 ~~~~~i~~~y~~l~~~~~~--~~-~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 316 VTTGEVYEEYKELCEELGY--EP-RTHTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred ccHHHHHHHHHHHHHHcCC--Cc-CcHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 5555555432 2221110 00 112345679999999999987643 234555555554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.37 E-value=9.8e-13 Score=152.18 Aligned_cols=234 Identities=18% Similarity=0.159 Sum_probs=121.9
Q ss_pred CceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcc
Q 048733 572 SKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNL 651 (887)
Q Consensus 572 ~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l 651 (887)
++++.|.+.++... . ++ ...++|++|+|++|.++.+|.. ..+|++|++++|. +..+|.. .
T Consensus 222 ~~L~~L~L~~N~Lt--~-LP---~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~--------L~~Lp~l---p 281 (788)
T PRK15387 222 AHITTLVIPDNNLT--S-LP---ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP--------LTHLPAL---P 281 (788)
T ss_pred cCCCEEEccCCcCC--C-CC---CCCCCCcEEEecCCccCcccCc---ccccceeeccCCc--------hhhhhhc---h
Confidence 47888888876542 1 22 2357899999999999988853 3577777777654 4444431 1
Q ss_pred cccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHH
Q 048733 652 KKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDL 731 (887)
Q Consensus 652 ~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l 731 (887)
.+|+.|++++| .+..+|.. +++|+.|+ ++.+.+... +. -..+|+.|.++++... .+
T Consensus 282 ~~L~~L~Ls~N-----------~Lt~LP~~---p~~L~~Ld----LS~N~L~~L-p~---lp~~L~~L~Ls~N~L~--~L 337 (788)
T PRK15387 282 SGLCKLWIFGN-----------QLTSLPVL---PPGLQELS----VSDNQLASL-PA---LPSELCKLWAYNNQLT--SL 337 (788)
T ss_pred hhcCEEECcCC-----------cccccccc---ccccceeE----CCCCccccC-CC---CcccccccccccCccc--cc
Confidence 34445555554 22333321 23344444 333333211 00 0123444444432211 11
Q ss_pred HHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcCcCcCccc
Q 048733 732 CALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDPISWFPKL 810 (887)
Q Consensus 732 ~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~~~L 810 (887)
+.. ..+|+.|++++|.... ++..+.+|+.|++++|. ..+|.. ..+|+.|+|++|.+...|. .+++|
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls~------LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~-l~s~L 404 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLAS------LPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPV-LPSEL 404 (788)
T ss_pred ccc---ccccceEecCCCccCC------CCCCCcccceehhhccccccCccc---ccccceEEecCCcccCCCC-cccCC
Confidence 210 1356666666654332 11122356666666542 445532 2456666666666655432 24566
Q ss_pred ceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 811 RKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 811 ~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
+.|+++++. +..+|.. +++|+.|++++|. ++.+|..+.++++|+.|++++||
T Consensus 405 ~~LdLS~N~-LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 405 KELMVSGNR-LTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CEEEccCCc-CCCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 666666653 4444421 3356666666655 55666666666666666666665
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.35 E-value=9.2e-14 Score=155.28 Aligned_cols=201 Identities=25% Similarity=0.296 Sum_probs=122.1
Q ss_pred CCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhc
Q 048733 571 DSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRN 650 (887)
Q Consensus 571 ~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~ 650 (887)
+-+|++|.+.++... ..+..+..+++|+.|+++.|.|.+.|.+++++.+|+||+|.+| .+..+|.++..
T Consensus 44 ~v~L~~l~lsnn~~~---~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n--------~l~~lP~~~~~ 112 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQIS---SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN--------RLQSLPASISE 112 (1081)
T ss_pred eeeeEEeeccccccc---cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc--------hhhcCchhHHh
Confidence 455788887777652 2345566777888888888888888888888888888887765 57888988989
Q ss_pred ccccCeeeecccccccccccchhhhhhccCCccccccccccc---------------cccccCceecchHHHHHhhcccc
Q 048733 651 LKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLR---------------GLLALPTIEADSQVLKELMMLRQ 715 (887)
Q Consensus 651 l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~---------------~~~~l~~~~~~~~~~~~l~~l~~ 715 (887)
+++|++|++++|.+ ...|.-+..++.+..+. ..+.+..+......+.++..++.
T Consensus 113 lknl~~LdlS~N~f-----------~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~ 181 (1081)
T KOG0618|consen 113 LKNLQYLDLSFNHF-----------GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH 181 (1081)
T ss_pred hhcccccccchhcc-----------CCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe
Confidence 99999999988732 22222222222222221 00013334444445555555554
Q ss_pred ccceeEEeccCChhHHHHHHhcccCCcEEEE--------------------eecCCccccccCcccccccccceeEEeec
Q 048733 716 LNMLSIRRQNGNGRDLCALIANLENVETLGV--------------------LMKSKEEILDLQSLSSPPQHLQYLSLRGN 775 (887)
Q Consensus 716 L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l--------------------~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 775 (887)
.|++..+... ...+.++.+|+.|.. ..|...+ ....+.|.+|+.++++.+
T Consensus 182 --~ldLr~N~~~----~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~----~~~~p~p~nl~~~dis~n 251 (1081)
T KOG0618|consen 182 --QLDLRYNEME----VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTT----LDVHPVPLNLQYLDISHN 251 (1081)
T ss_pred --eeecccchhh----hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCccee----eccccccccceeeecchh
Confidence 4555543222 122233333333333 2222221 111234559999999986
Q ss_pred -cCCCChhhhcCCCcceeEEEecccCCcC
Q 048733 776 -MKKLPDWILKLKNLIGSRLILSGLTEDP 803 (887)
Q Consensus 776 -~~~lp~~~~~l~~L~~L~L~~~~l~~~~ 803 (887)
+..+|+|++.+.||+.|....|.++..+
T Consensus 252 ~l~~lp~wi~~~~nle~l~~n~N~l~~lp 280 (1081)
T KOG0618|consen 252 NLSNLPEWIGACANLEALNANHNRLVALP 280 (1081)
T ss_pred hhhcchHHHHhcccceEecccchhHHhhH
Confidence 4789999999999999999988775533
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=9.4e-13 Score=153.44 Aligned_cols=243 Identities=16% Similarity=0.167 Sum_probs=153.8
Q ss_pred eeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcccc
Q 048733 574 VRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKK 653 (887)
Q Consensus 574 lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~ 653 (887)
...|.+.+.... .++..+ .+.|+.|+|++|.++.+|..+. .+|++|++++| .+..+|..+. .+
T Consensus 180 ~~~L~L~~~~Lt---sLP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N--------~LtsLP~~l~--~~ 242 (754)
T PRK15370 180 KTELRLKILGLT---TIPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSN--------QLTSIPATLP--DT 242 (754)
T ss_pred ceEEEeCCCCcC---cCCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCC--------ccccCChhhh--cc
Confidence 455666554331 122222 2479999999999999998765 58888888765 4667776553 46
Q ss_pred cCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHH
Q 048733 654 LRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCA 733 (887)
Q Consensus 654 L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~ 733 (887)
|+.|++++| ....+|..+. ++|+.|. ++++.+.. .+..+. ++|+.|+++++... .++.
T Consensus 243 L~~L~Ls~N-----------~L~~LP~~l~--s~L~~L~----Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt--~LP~ 300 (754)
T PRK15370 243 IQEMELSIN-----------RITELPERLP--SALQSLD----LFHNKISC-LPENLP--EELRYLSVYDNSIR--TLPA 300 (754)
T ss_pred ccEEECcCC-----------ccCcCChhHh--CCCCEEE----CcCCccCc-cccccC--CCCcEEECCCCccc--cCcc
Confidence 788888877 3445555443 3666666 55555432 222222 46778877764322 2222
Q ss_pred HHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcCcCcCcccce
Q 048733 734 LIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDPISWFPKLRK 812 (887)
Q Consensus 734 ~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~~~L~~ 812 (887)
.+. ++|+.|++++|..... +.. .+++|+.|++++|. ..+|..+. ++|+.|+|++|.+...|....++|+.
T Consensus 301 ~lp--~sL~~L~Ls~N~Lt~L---P~~--l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp~~L~~ 371 (754)
T PRK15370 301 HLP--SGITHLNVQSNSLTAL---PET--LPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLPPTITT 371 (754)
T ss_pred cch--hhHHHHHhcCCccccC---Ccc--ccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhhcCCcCE
Confidence 221 3577777777654431 111 12378888888764 56776553 68888999888887655444568888
Q ss_pred eeeCcCCCceeEEEcCCCccCccEEEEccCCCCCccccccc----cCCCCCEEEEEechh
Q 048733 813 LVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGID----HLRNLELLTFHDMSK 868 (887)
Q Consensus 813 L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~----~l~~L~~L~l~~c~~ 868 (887)
|++.+|. +..+|... .+.|+.|++++|. +..+|..+. .++++..|++.+||-
T Consensus 372 LdLs~N~-Lt~LP~~l--~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 372 LDVSRNA-LTNLPENL--PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred EECCCCc-CCCCCHhH--HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 8888874 55565432 2468888888876 567766543 357888899988884
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.30 E-value=8.3e-14 Score=124.84 Aligned_cols=131 Identities=26% Similarity=0.348 Sum_probs=104.2
Q ss_pred CCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchhh
Q 048733 595 ANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEA 674 (887)
Q Consensus 595 ~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 674 (887)
.++.++..|-|++|+++.+|..|..|.+|+.|++.+| +++++|..|+.|++|++|+++-| .
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn--------qie~lp~~issl~klr~lnvgmn-----------r 90 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN--------QIEELPTSISSLPKLRILNVGMN-----------R 90 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc--------hhhhcChhhhhchhhhheecchh-----------h
Confidence 4677888999999999999999999999999998875 69999999999999999999977 6
Q ss_pred hhhccCCccccccccccccccccCceecc-hHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecC
Q 048733 675 AAKIHRGFGSLRGLQSLRGLLALPTIEAD-SQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKS 750 (887)
Q Consensus 675 ~~~~p~~i~~L~~L~~L~~~~~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 750 (887)
+..+|.|||+++.|+.|+ +..+..+ ...+..+-.|+.|+.|.+..+ ..+.+|..++++++|+.|.+..|+
T Consensus 91 l~~lprgfgs~p~levld----ltynnl~e~~lpgnff~m~tlralyl~dn--dfe~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 91 LNILPRGFGSFPALEVLD----LTYNNLNENSLPGNFFYMTTLRALYLGDN--DFEILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred hhcCccccCCCchhhhhh----ccccccccccCCcchhHHHHHHHHHhcCC--CcccCChhhhhhcceeEEeeccCc
Confidence 788999999999999998 5555553 335555666677777766643 344566667777777777666553
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.25 E-value=1.4e-11 Score=142.58 Aligned_cols=243 Identities=16% Similarity=0.061 Sum_probs=164.6
Q ss_pred CCceEEEEecCCCccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecC
Q 048733 550 SKTRRITIQRSIDDGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNAR 629 (887)
Q Consensus 550 ~~~r~lsi~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 629 (887)
..++.|.+..+.....+. ..++|++|.+.++... .++. ..+.|+.|+|++|.+..+|... .+|+.|+++
T Consensus 222 ~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lt---sLP~---lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls 290 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT---SLPV---LPPGLLELSIFSNPLTHLPALP---SGLCKLWIF 290 (788)
T ss_pred cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccC---cccC---cccccceeeccCCchhhhhhch---hhcCEEECc
Confidence 467888888765543322 3578999999988652 2222 2468999999999999888643 456667666
Q ss_pred CCceeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHH
Q 048733 630 NTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKE 709 (887)
Q Consensus 630 ~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~ 709 (887)
+| .+..+|. .+++|++|++++| .+..+|....+ |+.|. +..+.+.. .+.
T Consensus 291 ~N--------~Lt~LP~---~p~~L~~LdLS~N-----------~L~~Lp~lp~~---L~~L~----Ls~N~L~~-LP~- 339 (788)
T PRK15387 291 GN--------QLTSLPV---LPPGLQELSVSDN-----------QLASLPALPSE---LCKLW----AYNNQLTS-LPT- 339 (788)
T ss_pred CC--------ccccccc---cccccceeECCCC-----------ccccCCCCccc---ccccc----cccCcccc-ccc-
Confidence 54 5778886 3578999999997 34445543333 44444 33444432 111
Q ss_pred hhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCC
Q 048733 710 LMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKN 788 (887)
Q Consensus 710 l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~ 788 (887)
-..+|+.|++++|.... +|.. ..+|+.|.+++|.... ++ ..+.+|+.|+|++|. ..+|.. .++
T Consensus 340 --lp~~Lq~LdLS~N~Ls~--LP~l---p~~L~~L~Ls~N~L~~---LP---~l~~~L~~LdLs~N~Lt~LP~l---~s~ 403 (788)
T PRK15387 340 --LPSGLQELSVSDNQLAS--LPTL---PSELYKLWAYNNRLTS---LP---ALPSGLKELIVSGNRLTSLPVL---PSE 403 (788)
T ss_pred --cccccceEecCCCccCC--CCCC---Ccccceehhhcccccc---Cc---ccccccceEEecCCcccCCCCc---ccC
Confidence 12478899998754332 3321 2478888888775443 22 223489999999874 667743 368
Q ss_pred cceeEEEecccCCcCcCcCcccceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCCcccccc
Q 048733 789 LIGSRLILSGLTEDPISWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGI 852 (887)
Q Consensus 789 L~~L~L~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~ 852 (887)
|+.|+|++|.+...|. .+.+|+.|++.++. +..+|..++.+++|+.|++++|+.-...|..+
T Consensus 404 L~~LdLS~N~LssIP~-l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 404 LKELMVSGNRLTSLPM-LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCEEEccCCcCCCCCc-chhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 9999999999987653 35689999998865 67888888899999999999999655555544
No 21
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.23 E-value=4.4e-09 Score=115.98 Aligned_cols=308 Identities=15% Similarity=0.140 Sum_probs=176.6
Q ss_pred cCccccchhcHHHHHHHHhcC--CCCcEEEEEEccCCCCHHHHHHHHhcccCcc-CCC---ceeEEEEeCCCCCHHHHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNG--RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLK-THF---SCRAWVTVGKEYNKNDLLR 243 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~v~~~~~~~~~~~ 243 (887)
++.++||++++++|..++... ......+.|+|++|+|||++++.+++..... ... -..+|++.....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 457999999999999998752 2234568899999999999999999852111 111 2356777777777888999
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhC--CCceEEEEeccCChh-H----HHHHHHhc
Q 048733 244 TIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLK--DKSYMVVLDDVWKID-F----WRDVEHAL 316 (887)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~-~----~~~l~~~l 316 (887)
.|+.++..... ..+ ....+..++...+.+.+. +++++||||+++... . ...+....
T Consensus 94 ~i~~~l~~~~~---------------~~~--~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~ 156 (365)
T TIGR02928 94 ELANQLRGSGE---------------EVP--TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRAR 156 (365)
T ss_pred HHHHHHhhcCC---------------CCC--CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccc
Confidence 99998853000 000 012234555666666663 567899999997661 1 22222111
Q ss_pred -CCCC--CCcEEEEEccchhHHhhh----ccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHh
Q 048733 317 -LDNK--KCSRIIVTTRHMNVAKFC----KLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKC 389 (887)
Q Consensus 317 -~~~~--~gs~iivTtR~~~v~~~~----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c 389 (887)
.... ....+|.++......... ...-....+.++|.+.++..+++..++-....+....++..+....++..+
T Consensus 157 ~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~ 236 (365)
T TIGR02928 157 SNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQE 236 (365)
T ss_pred cccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHh
Confidence 1111 223344444433221111 111112568999999999999999886311111122333344555677777
Q ss_pred CCCchHH-HHHhhhh--c--C--CCCCHHHHHHHHHHhccccCCCCCccchHHHHhhcccCCChhhHHHHhhhcccC--C
Q 048733 390 GGLPLAI-VAVGGLL--S--T--KNRIVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYYDLPHHLKSCLLYFGLFP--E 460 (887)
Q Consensus 390 ~G~PLai-~~~~~~l--~--~--~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~Lp~~~k~cf~~~s~fp--~ 460 (887)
.|.|-.+ ..+-... + . ..-+.+....+.+... .....-++..||.+.+..+..++..- .
T Consensus 237 ~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~ 304 (365)
T TIGR02928 237 HGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE------------KDRLLELIRGLPTHSKLVLLAIANLAAND 304 (365)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcC
Confidence 7888433 2221111 1 1 1123445554444331 12334466789999887776665321 3
Q ss_pred CcccChhHHHHHHH--HcCccccCCCCCHHHHHHHHHHHHhhcCCeeeeec
Q 048733 461 SCKINRGRLIRLWI--AEGLVQYSKRFTSEQVAAEYLDELIDRSLVQVSNR 509 (887)
Q Consensus 461 ~~~i~~~~li~~w~--a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~ 509 (887)
+..+....+...+- ++.+ . ..........+++..|...|++.....
T Consensus 305 ~~~~~~~~~~~~y~~~~~~~-~--~~~~~~~~~~~~l~~l~~~gli~~~~~ 352 (365)
T TIGR02928 305 EDPFRTGEVYEVYKEVCEDI-G--VDPLTQRRISDLLNELDMLGLVEAEER 352 (365)
T ss_pred CCCccHHHHHHHHHHHHHhc-C--CCCCcHHHHHHHHHHHHhcCCeEEEEE
Confidence 44466666666442 2211 1 011224567889999999999998643
No 22
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.21 E-value=6e-10 Score=125.08 Aligned_cols=306 Identities=16% Similarity=0.216 Sum_probs=190.7
Q ss_pred HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCC-CCCHHHHHHHHHHHHhhccCCCCCC
Q 048733 181 DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK-EYNKNDLLRTIIKEFHRLSKHGRDG 259 (887)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~ 259 (887)
.+|.+.|... ...+.+.|..++|.|||||+.+.+.. ...-..++|.++.+ +.++..++..++..++.-.....+.
T Consensus 25 ~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~~---~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 25 PRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWREL---AADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred HHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHHh---cCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence 3455555544 24789999999999999999999751 12234589999876 4668888999998887543211100
Q ss_pred CCCCCCCCCCCCccccccCCHHHHHHHHHHHhCC--CceEEEEeccCCh--hHHHH-HHHhcCCCCCCcEEEEEccchhH
Q 048733 260 PDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKD--KSYMVVLDDVWKI--DFWRD-VEHALLDNKKCSRIIVTTRHMNV 334 (887)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LlVlDdv~~~--~~~~~-l~~~l~~~~~gs~iivTtR~~~v 334 (887)
.. ...+.....+...++..+...+.. ++..+||||..-. ..... +...+.....+-..|||||...-
T Consensus 101 a~--------~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 101 AQ--------TLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred HH--------HHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 00 000111223455666666666644 6899999998532 23333 33334456668899999998754
Q ss_pred HhhhccCCCcceeecC----CCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHhhhhcCCCCCH
Q 048733 335 AKFCKLSSSVRIHELE----TLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSTKNRIV 410 (887)
Q Consensus 335 ~~~~~~~~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~ 410 (887)
.......-.....++. .|+.+|+-++|....... -.+...+.+.+..+|-+-|+..++=.+++... .
T Consensus 173 l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~--------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~-~ 243 (894)
T COG2909 173 LGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP--------LDAADLKALYDRTEGWAAALQLIALALRNNTS-A 243 (894)
T ss_pred CcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC--------CChHHHHHHHhhcccHHHHHHHHHHHccCCCc-H
Confidence 3322111111233332 488999999998875211 12456788999999999999998887773322 2
Q ss_pred HHHHHHHHHhccccCCCCCccchH-HHHhhcccCCChhhHHHHhhhcccCCCcccChhHHHHHHHHcCccccCCCCCHHH
Q 048733 411 SEWKKLFDRLGSMLGSDPHLKDCN-RVLSEGYYDLPHHLKSCLLYFGLFPESCKINRGRLIRLWIAEGLVQYSKRFTSEQ 489 (887)
Q Consensus 411 ~~w~~~~~~~~~~~~~~~~~~~i~-~~l~~sy~~Lp~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~ 489 (887)
+.-...++-. ...+. -...--++.||+++|..++-+|+++.- . ..|+..-. -++
T Consensus 244 ~q~~~~LsG~---------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~Lt------------g~~ 298 (894)
T COG2909 244 EQSLRGLSGA---------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNALT------------GEE 298 (894)
T ss_pred HHHhhhccch---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHHh------------cCC
Confidence 2222221110 01111 123345789999999999999998732 1 22333221 123
Q ss_pred HHHHHHHHHhhcCCeeeeecCCCCceeEEEeCHHHHHHHHHhhhhc
Q 048733 490 VAAEYLDELIDRSLVQVSNREIPGRAIICHVHDLMHEIIIRKTEEL 535 (887)
Q Consensus 490 ~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~Hdlv~~~~~~~~~~e 535 (887)
.+..++++|.+++++-..-. +...+|+.|+++.||.+...+.+
T Consensus 299 ng~amLe~L~~~gLFl~~Ld---d~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 299 NGQAMLEELERRGLFLQRLD---DEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred cHHHHHHHHHhCCCceeeec---CCCceeehhHHHHHHHHhhhccc
Confidence 47778999999998765432 22358999999999998776653
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.18 E-value=1.7e-11 Score=145.22 Aligned_cols=253 Identities=25% Similarity=0.309 Sum_probs=156.0
Q ss_pred ccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCC--CCCCccc-cccccccceeecCCCceeeecCccccc
Q 048733 567 ESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSP--INYLPEG-VGNLFNLHLLNARNTKILDLAHTFVSE 643 (887)
Q Consensus 567 ~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~--l~~lp~~-i~~L~~L~~L~L~~~~~Ldl~~~~l~~ 643 (887)
.......+|...+.++.... . ..-..++.|++|-+.++. +..++.. +..+++|++|||++|. .+.+
T Consensus 518 ~~~~~~~~rr~s~~~~~~~~--~--~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-------~l~~ 586 (889)
T KOG4658|consen 518 QVKSWNSVRRMSLMNNKIEH--I--AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-------SLSK 586 (889)
T ss_pred cccchhheeEEEEeccchhh--c--cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-------ccCc
Confidence 34556788888888776521 1 112345579999999886 5666654 6779999999999865 7889
Q ss_pred cchhhhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEe
Q 048733 644 LPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRR 723 (887)
Q Consensus 644 lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 723 (887)
||..|++|.+||+|+++++ ....+|.++++|..|++|. +.........+..+..|.+|+.|.+..
T Consensus 587 LP~~I~~Li~LryL~L~~t-----------~I~~LP~~l~~Lk~L~~Ln----l~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDT-----------GISHLPSGLGNLKKLIYLN----LEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred CChHHhhhhhhhcccccCC-----------CccccchHHHHHHhhheec----cccccccccccchhhhcccccEEEeec
Confidence 9999999999999999997 6779999999999999998 333322223355566799999999987
Q ss_pred c-cCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCC
Q 048733 724 Q-NGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTE 801 (887)
Q Consensus 724 ~-~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~ 801 (887)
. ..........+.++.+|+.+.+......-...+..+.......+.+.+.++. ...+..+..+.+|+.|.+.+|.+.+
T Consensus 652 s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 652 SALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred cccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCch
Confidence 3 2334445566677888888877644331001111111111122333332221 3344455667777777777777654
Q ss_pred cCcCc---------CcccceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCC
Q 048733 802 DPISW---------FPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLM 846 (887)
Q Consensus 802 ~~~~~---------~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~ 846 (887)
..+.. |++|..+.+.+|...+...+ ....|+|+.|.+..|..+.
T Consensus 732 ~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~-~~f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 732 IVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW-LLFAPHLTSLSLVSCRLLE 784 (889)
T ss_pred hhcccccccchhhhHHHHHHHHhhccccccccch-hhccCcccEEEEecccccc
Confidence 32221 44444444444443332221 1224555555555555444
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.17 E-value=2.8e-11 Score=141.18 Aligned_cols=224 Identities=17% Similarity=0.191 Sum_probs=149.8
Q ss_pred CceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcc
Q 048733 572 SKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNL 651 (887)
Q Consensus 572 ~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l 651 (887)
++++.|.+.++... .++... +++|+.|+|++|.++.+|..+. .+|+.|+|++| .+..+|..+.
T Consensus 199 ~~L~~L~Ls~N~Lt--sLP~~l---~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N--------~L~~LP~~l~-- 261 (754)
T PRK15370 199 EQITTLILDNNELK--SLPENL---QGNIKTLYANSNQLTSIPATLP--DTIQEMELSIN--------RITELPERLP-- 261 (754)
T ss_pred cCCcEEEecCCCCC--cCChhh---ccCCCEEECCCCccccCChhhh--ccccEEECcCC--------ccCcCChhHh--
Confidence 57899999887652 232222 2589999999999999997654 36777777664 5778887764
Q ss_pred cccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHH
Q 048733 652 KKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDL 731 (887)
Q Consensus 652 ~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l 731 (887)
.+|+.|++++| .+..+|..+. ++|+.|. ++.+.+... +..+. ++|+.|+++++... .+
T Consensus 262 s~L~~L~Ls~N-----------~L~~LP~~l~--~sL~~L~----Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt--~L 319 (754)
T PRK15370 262 SALQSLDLFHN-----------KISCLPENLP--EELRYLS----VYDNSIRTL-PAHLP--SGITHLNVQSNSLT--AL 319 (754)
T ss_pred CCCCEEECcCC-----------ccCccccccC--CCCcEEE----CCCCccccC-cccch--hhHHHHHhcCCccc--cC
Confidence 57899999876 4455665553 4677777 556555321 11121 35677777764322 23
Q ss_pred HHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcCcCcCccc
Q 048733 732 CALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDPISWFPKL 810 (887)
Q Consensus 732 ~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~~~L 810 (887)
+..+ .++|+.|.+++|..... +.. .+++|+.|+|++|. ..+|..+ .++|+.|+|++|.+...|.....+|
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~L---P~~--l~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~~sL 390 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTSL---PAS--LPPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLPAAL 390 (754)
T ss_pred Cccc--cccceeccccCCccccC---Chh--hcCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHHHHH
Confidence 3322 25788899888765432 211 12489999999874 5677655 3689999999999887665545678
Q ss_pred ceeeeCcCCCceeEEEc----CCCccCccEEEEccCCC
Q 048733 811 RKLVLLNFEAVKSVIIE----KGAMPDIRELWIGPCPL 844 (887)
Q Consensus 811 ~~L~l~~~~~l~~~~~~----~~~lp~L~~L~l~~c~~ 844 (887)
+.|++.++. +..+|.. .+.+|++..|++.+|+.
T Consensus 391 ~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 391 QIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 999988864 5555543 23458889999999884
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.16 E-value=5.3e-09 Score=110.04 Aligned_cols=183 Identities=19% Similarity=0.229 Sum_probs=112.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPE 273 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 273 (887)
..++.|+|++|+|||||++.+++.... ..+ ..+|+ +....+..+++..|...++....
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~------------------- 100 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE------------------- 100 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-------------------
Confidence 457899999999999999999986332 111 22333 33345777888888877654211
Q ss_pred ccccCCHH----HHHHHHHHHh-CCCceEEEEeccCChh--HHHHHHHhcC---CCCCCcEEEEEccchhHHhhhcc---
Q 048733 274 EIHNMEET----DLITTLRDHL-KDKSYMVVLDDVWKID--FWRDVEHALL---DNKKCSRIIVTTRHMNVAKFCKL--- 340 (887)
Q Consensus 274 ~~~~~~~~----~l~~~l~~~L-~~kr~LlVlDdv~~~~--~~~~l~~~l~---~~~~gs~iivTtR~~~v~~~~~~--- 340 (887)
..+.. .+...+.... .+++.+||+||++..+ .++.+..... .......|++|.... .......
T Consensus 101 ---~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~ 176 (269)
T TIGR03015 101 ---GRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQL 176 (269)
T ss_pred ---CCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchh
Confidence 11112 2333333323 6788999999998764 5555543222 122233455655433 2111110
Q ss_pred ----CCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHhhhh
Q 048733 341 ----SSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLL 403 (887)
Q Consensus 341 ----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l 403 (887)
......+.+++|+.+|..+++...+...... ....-..+..+.|++.|+|.|..+..++..+
T Consensus 177 ~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~-~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIEHRLERAGNR-DAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCC-CCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 0012467899999999999998876433210 1112235788999999999999999888766
No 26
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.11 E-value=4.2e-10 Score=115.80 Aligned_cols=207 Identities=19% Similarity=0.193 Sum_probs=101.8
Q ss_pred cccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHH-------
Q 048733 173 VVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTI------- 245 (887)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i------- 245 (887)
|+||+.++++|.+++..+. .+.+.|+|+.|+|||+|++.+.+.. +..-...+|+....... ......+
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESN-ESSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSH-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchh-hhHHHHHHHHHHHH
Confidence 7899999999999998753 4588899999999999999999853 22111344444433332 2222222
Q ss_pred ---HHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh--------HHHHHHH
Q 048733 246 ---IKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID--------FWRDVEH 314 (887)
Q Consensus 246 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--------~~~~l~~ 314 (887)
...+....... ...... .............+.+.+.+ .+++.+||+||+.... -...+..
T Consensus 76 ~~l~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~ 146 (234)
T PF01637_consen 76 DELSEALGISIPSI--TLEKIS-----KDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRS 146 (234)
T ss_dssp CHCHHHHHHHCCTS--TTEEEE-----CTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHH
T ss_pred HHHHHHHhhhcccc--cchhhh-----hcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHH
Confidence 22222211100 000000 00000011122233333332 2355999999985443 1222333
Q ss_pred hcC---CCCCCcEEEEEccchhHHhh-h----ccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHH
Q 048733 315 ALL---DNKKCSRIIVTTRHMNVAKF-C----KLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDIL 386 (887)
Q Consensus 315 ~l~---~~~~gs~iivTtR~~~v~~~-~----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~ 386 (887)
.+. ...+.+.|+++|.. ..... . ........+.+++|+.+++++++...+-.. . .. +...+..++|+
T Consensus 147 ~~~~~~~~~~~~~v~~~S~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~--~~-~~~~~~~~~i~ 221 (234)
T PF01637_consen 147 LLDSLLSQQNVSIVITGSSD-SLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I--KL-PFSDEDIEEIY 221 (234)
T ss_dssp HHHH----TTEEEEEEESSH-HHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC----------HHHHHHHH
T ss_pred HHhhccccCCceEEEECCch-HHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h--cc-cCCHHHHHHHH
Confidence 332 34444555555543 22222 1 011223569999999999999999975332 1 11 22356679999
Q ss_pred HHhCCCchHHHH
Q 048733 387 AKCGGLPLAIVA 398 (887)
Q Consensus 387 ~~c~G~PLai~~ 398 (887)
..+||+|..|..
T Consensus 222 ~~~gG~P~~l~~ 233 (234)
T PF01637_consen 222 SLTGGNPRYLQE 233 (234)
T ss_dssp HHHTT-HHHHHH
T ss_pred HHhCCCHHHHhc
Confidence 999999988764
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=7.2e-12 Score=135.77 Aligned_cols=258 Identities=19% Similarity=0.111 Sum_probs=138.5
Q ss_pred cccCCCceeEEEEecCCCCC-----CCccccccccccceeecCCCceeeec--CccccccchhhhcccccCeeeeccccc
Q 048733 592 SCIANFKLMKVLDLEDSPIN-----YLPEGVGNLFNLHLLNARNTKILDLA--HTFVSELPEEIRNLKKLRSLIVFHYKY 664 (887)
Q Consensus 592 ~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~Ldl~--~~~l~~lp~~i~~l~~L~~L~l~~~~~ 664 (887)
..+..+..|++|++++|.++ .++..+...+.|++|+++++. +. ...+..++..+.++++|++|++++|..
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~---~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE---TGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc---cCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 45566677888888888874 355566677778888777653 11 123344556667778888888887621
Q ss_pred ccccccchhhhhhccCCcccc---ccccccccccccCceecch----HHHHHhhcc-ccccceeEEeccCC---hhHHHH
Q 048733 665 ITGSIIPTEAAAKIHRGFGSL---RGLQSLRGLLALPTIEADS----QVLKELMML-RQLNMLSIRRQNGN---GRDLCA 733 (887)
Q Consensus 665 ~~~~~~~~~~~~~~p~~i~~L---~~L~~L~~~~~l~~~~~~~----~~~~~l~~l-~~L~~L~l~~~~~~---~~~l~~ 733 (887)
. ...+..+..+ ++|+.|. ++.+.+.. .....+..+ ++|+.|+++++... ...+..
T Consensus 94 -~---------~~~~~~~~~l~~~~~L~~L~----ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 94 -G---------PDGCGVLESLLRSSSLQELK----LNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred -C---------hhHHHHHHHHhccCcccEEE----eeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 1 0111122222 3366666 44444432 122344555 67777777764333 123445
Q ss_pred HHhcccCCcEEEEeecCCcccc--cc-CcccccccccceeEEeecc-C-----CCChhhhcCCCcceeEEEecccCCcCc
Q 048733 734 LIANLENVETLGVLMKSKEEIL--DL-QSLSSPPQHLQYLSLRGNM-K-----KLPDWILKLKNLIGSRLILSGLTEDPI 804 (887)
Q Consensus 734 ~l~~~~~L~~L~l~~~~~~~~~--~l-~~l~~~~~~L~~L~L~~~~-~-----~lp~~~~~l~~L~~L~L~~~~l~~~~~ 804 (887)
.+..+++|+.|++++|...+.. .+ ..+...+ +|+.|+++++. . .++..+..+++|+.|++++|.+....+
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANC-NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC-CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 5566667777777766544211 00 1122222 67777777653 1 234445566777777777776654211
Q ss_pred C--------cCcccceeeeCcCCCc----eeEEEcCCCccCccEEEEccCCCCCc----cccccccC-CCCCEEEEEech
Q 048733 805 S--------WFPKLRKLVLLNFEAV----KSVIIEKGAMPDIRELWIGPCPLLME----IPIGIDHL-RNLELLTFHDMS 867 (887)
Q Consensus 805 ~--------~~~~L~~L~l~~~~~l----~~~~~~~~~lp~L~~L~l~~c~~l~~----lp~~~~~l-~~L~~L~l~~c~ 867 (887)
. ..++|++|.+.+|.-. ..+......+++|+.|++++|..-.. +...+... +.|++|++.++|
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 1 1356666666665421 11111223346677777766663322 22233333 566666666554
No 28
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.05 E-value=4e-12 Score=114.17 Aligned_cols=154 Identities=21% Similarity=0.265 Sum_probs=101.4
Q ss_pred CCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhh
Q 048733 569 IKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEI 648 (887)
Q Consensus 569 ~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i 648 (887)
.+++++..|.++.+.. ...+.-+..+++|++|++++|.++++|.+|+.|++||.|++.-| .+..+|.++
T Consensus 30 f~~s~ITrLtLSHNKl---~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn--------rl~~lprgf 98 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKL---TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN--------RLNILPRGF 98 (264)
T ss_pred cchhhhhhhhcccCce---eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh--------hhhcCcccc
Confidence 3556666666666654 34455677888899999999999999999999999998888765 467778888
Q ss_pred hcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCCh
Q 048733 649 RNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNG 728 (887)
Q Consensus 649 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 728 (887)
+.++.|+.|++..|+- .-..+|..|..|+.|..|. ++.+++ ...+.+++++++|+.|.+..+ ..
T Consensus 99 gs~p~levldltynnl---------~e~~lpgnff~m~tlraly----l~dndf-e~lp~dvg~lt~lqil~lrdn--dl 162 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNL---------NENSLPGNFFYMTTLRALY----LGDNDF-EILPPDVGKLTNLQILSLRDN--DL 162 (264)
T ss_pred CCCchhhhhhcccccc---------ccccCCcchhHHHHHHHHH----hcCCCc-ccCChhhhhhcceeEEeeccC--ch
Confidence 8888888888877631 1224555555555555554 333333 223455666666666666543 23
Q ss_pred hHHHHHHhcccCCcEEEEeec
Q 048733 729 RDLCALIANLENVETLGVLMK 749 (887)
Q Consensus 729 ~~l~~~l~~~~~L~~L~l~~~ 749 (887)
-.+|..++.+..|++|.+.+|
T Consensus 163 l~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 163 LSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhCcHHHHHHHHHHHHhcccc
Confidence 345666666677777776665
No 29
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.04 E-value=3.5e-09 Score=126.39 Aligned_cols=334 Identities=16% Similarity=0.173 Sum_probs=190.8
Q ss_pred ccccchhcHHHHHHHHhcC-CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeE---EEEeCCCCC---HHHHHHH
Q 048733 172 EVVGIESIKDKLIDLMLNG-RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRA---WVTVGKEYN---KNDLLRT 244 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~---wv~v~~~~~---~~~~~~~ 244 (887)
+++||+.+++.|.+.+... .+...++.+.|..|||||+|+++|... +...+...+ +-....+.. ..+.+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 4789999999999988764 345679999999999999999999985 322222111 111222222 2344555
Q ss_pred HHHHHhhccCCCC-------------------CCCC--CCCCCCCCCCccccccCCHH-----HHHHHHHHHh-CCCceE
Q 048733 245 IIKEFHRLSKHGR-------------------DGPD--RHAEGPLLPTPEEIHNMEET-----DLITTLRDHL-KDKSYM 297 (887)
Q Consensus 245 i~~~l~~~~~~~~-------------------~~~~--~~~~~~~~~~~~~~~~~~~~-----~l~~~l~~~L-~~kr~L 297 (887)
++.++........ +..+ ...-|...... +......+ .....+.... +.++.+
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~-el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPAL-ELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchh-hcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 5555422111000 0000 00111000000 01111111 2233333444 456999
Q ss_pred EEEecc-CChhHHHHHHHhcCCCCC-----CcEEEE--EccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCC
Q 048733 298 VVLDDV-WKIDFWRDVEHALLDNKK-----CSRIIV--TTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPS 369 (887)
Q Consensus 298 lVlDdv-~~~~~~~~l~~~l~~~~~-----gs~iiv--TtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 369 (887)
+|+||+ |.+...-++...+..... ...|.. |.+.. ....-........+.|.||+..+...+........
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~-~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~- 235 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPT-LGEILKSATNITTITLAPLSRADTNQLVAATLGCT- 235 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccch-hhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc-
Confidence 999999 877655555544432221 112322 33322 12222223345799999999999999999887332
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCchHHHHHhhhhcCCCC-----CHHHHHHHHHHhccccCCCCCccchHHHHhhcccCC
Q 048733 370 SGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSTKNR-----IVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYYDL 444 (887)
Q Consensus 370 ~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~L 444 (887)
.....+..+.|+++..|+|+++..+-..+..... ....|..-..++.. .+..+++...+..-.+.|
T Consensus 236 -----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----~~~~~~vv~~l~~rl~kL 306 (849)
T COG3899 236 -----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----LATTDAVVEFLAARLQKL 306 (849)
T ss_pred -----ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----chhhHHHHHHHHHHHhcC
Confidence 2233677889999999999999999888876521 12333322222211 111223445688899999
Q ss_pred ChhhHHHHhhhcccCCCcccChhHHHHHHHHcCccccCCCCCHHHHHHHHHHHHhhcCCeeeeecC---CCCcee-EEEe
Q 048733 445 PHHLKSCLLYFGLFPESCKINRGRLIRLWIAEGLVQYSKRFTSEQVAAEYLDELIDRSLVQVSNRE---IPGRAI-ICHV 520 (887)
Q Consensus 445 p~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~---~~~~~~-~~~~ 520 (887)
|...|..+-..|++...+ +.+.|...|.. ...+.+...++.|....++...+.. ...... +-+.
T Consensus 307 ~~~t~~Vl~~AA~iG~~F--~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~ 374 (849)
T COG3899 307 PGTTREVLKAAACIGNRF--DLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFL 374 (849)
T ss_pred CHHHHHHHHHHHHhCccC--CHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhh
Confidence 999999999999998554 45555555522 3455677767777666666433111 111111 2368
Q ss_pred CHHHHHHHHHh
Q 048733 521 HDLMHEIIIRK 531 (887)
Q Consensus 521 Hdlv~~~~~~~ 531 (887)
|+++++.|-..
T Consensus 375 H~~vqqaaY~~ 385 (849)
T COG3899 375 HDRVQQAAYNL 385 (849)
T ss_pred HHHHHHHHhcc
Confidence 99998887654
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.03 E-value=9e-09 Score=110.92 Aligned_cols=283 Identities=18% Similarity=0.124 Sum_probs=146.5
Q ss_pred cCccccchhcHHHHHHHHhc---CCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLN---GRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTII 246 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 246 (887)
-.+|+|+++.++.+..++.. .......+.|+|++|+|||+||+.+++.. ...+ .++..+ .......+..++
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEecc-cccChHHHHHHH
Confidence 35799999999999887764 23345678899999999999999999853 2222 111111 111111122222
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChhHHHHHHHhcCCCCCCcEEE
Q 048733 247 KEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKIDFWRDVEHALLDNKKCSRII 326 (887)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ii 326 (887)
..+....- . .-++...++ ....+.+...+.+.+..+|+|+..+...+. . ...+.+-|.
T Consensus 98 ~~l~~~~v--------------l-~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~---~l~~~~li~ 155 (328)
T PRK00080 98 TNLEEGDV--------------L-FIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---L---DLPPFTLIG 155 (328)
T ss_pred HhcccCCE--------------E-EEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---e---cCCCceEEe
Confidence 22110000 0 000000000 011222333333444444444433221110 0 011234566
Q ss_pred EEccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHhhhhcCC
Q 048733 327 VTTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSTK 406 (887)
Q Consensus 327 vTtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~ 406 (887)
.|++...+....... -...+.+++++.++..+++.+.+.... ..-..+....|++.|+|.|-.+..+...+
T Consensus 156 at~~~~~l~~~L~sR-f~~~~~l~~~~~~e~~~il~~~~~~~~-----~~~~~~~~~~ia~~~~G~pR~a~~~l~~~--- 226 (328)
T PRK00080 156 ATTRAGLLTSPLRDR-FGIVQRLEFYTVEELEKIVKRSARILG-----VEIDEEGALEIARRSRGTPRIANRLLRRV--- 226 (328)
T ss_pred ecCCcccCCHHHHHh-cCeeeecCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHHcCCCchHHHHHHHHH---
Confidence 677754433221110 015789999999999999998875432 12235678899999999996544444322
Q ss_pred CCCHHHHHHHHHHhccccCCCCCccchHHHHhhcccCCChhhHHHHh-hhcccCCCcccChhHHHHHHHHcCccccCCCC
Q 048733 407 NRIVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYYDLPHHLKSCLL-YFGLFPESCKINRGRLIRLWIAEGLVQYSKRF 485 (887)
Q Consensus 407 ~~~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~Lp~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~ 485 (887)
..|..... ...............+...+..|++..+..+. .+..|+.+ .+..+.+.... |.
T Consensus 227 ----~~~a~~~~---~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g~------- 288 (328)
T PRK00080 227 ----RDFAQVKG---DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---GE------- 288 (328)
T ss_pred ----HHHHHHcC---CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---CC-------
Confidence 22222110 00000111123334556677888888777775 66667655 45544443322 11
Q ss_pred CHHHHHHHHHH-HHhhcCCeeeee
Q 048733 486 TSEQVAAEYLD-ELIDRSLVQVSN 508 (887)
Q Consensus 486 ~~e~~~~~~l~-~L~~~sll~~~~ 508 (887)
..+.+++.++ .|++.+|++...
T Consensus 289 -~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 289 -ERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred -CcchHHHHhhHHHHHcCCcccCC
Confidence 1234555677 899999997443
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=4.6e-11 Score=129.44 Aligned_cols=256 Identities=18% Similarity=0.132 Sum_probs=169.2
Q ss_pred EEEecCCCCC--CCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhcc
Q 048733 602 VLDLEDSPIN--YLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIH 679 (887)
Q Consensus 602 ~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p 679 (887)
.|+|.++.+. ..+..+..+.+|++|+++++. +.......++..+...++|++|+++++. +.+ . ......++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~---l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~--~-~~~~~~~~ 74 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNT---LGEEAAKALASALRPQPSLKELCLSLNE-TGR--I-PRGLQSLL 74 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCC---CcHHHHHHHHHHHhhCCCceEEeccccc-cCC--c-chHHHHHH
Confidence 4677777765 455666778889999998864 1111234677778888999999998862 111 0 01233445
Q ss_pred CCccccccccccccccccCceecchHHHHHhhcccc---ccceeEEeccCCh---hHHHHHHhcc-cCCcEEEEeecCCc
Q 048733 680 RGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQ---LNMLSIRRQNGNG---RDLCALIANL-ENVETLGVLMKSKE 752 (887)
Q Consensus 680 ~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~---L~~L~l~~~~~~~---~~l~~~l~~~-~~L~~L~l~~~~~~ 752 (887)
..+..+++|+.|+ ++.+.........+..+.+ |+.|+++++.... ..+...+..+ ++|+.|++.+|...
T Consensus 75 ~~l~~~~~L~~L~----l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 75 QGLTKGCGLQELD----LSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHHhcCceeEEE----ccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 5677788999998 6666665444555555554 9999999744332 2344566777 89999999988765
Q ss_pred ccc--ccCcccccccccceeEEeecc-C-----CCChhhhcCCCcceeEEEecccCCcC-------cCcCcccceeeeCc
Q 048733 753 EIL--DLQSLSSPPQHLQYLSLRGNM-K-----KLPDWILKLKNLIGSRLILSGLTEDP-------ISWFPKLRKLVLLN 817 (887)
Q Consensus 753 ~~~--~l~~l~~~~~~L~~L~L~~~~-~-----~lp~~~~~l~~L~~L~L~~~~l~~~~-------~~~~~~L~~L~l~~ 817 (887)
... .+........+|+.|+++++. . .++..+..+++|+.|+|++|.+.... +..+++|++|++.+
T Consensus 151 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 151 GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred chHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence 321 111111222389999999863 2 23334455679999999999886432 23678999999999
Q ss_pred CCCceeEEE-c-CC----CccCccEEEEccCCCC----CccccccccCCCCCEEEEEechhh
Q 048733 818 FEAVKSVII-E-KG----AMPDIRELWIGPCPLL----MEIPIGIDHLRNLELLTFHDMSKQ 869 (887)
Q Consensus 818 ~~~l~~~~~-~-~~----~lp~L~~L~l~~c~~l----~~lp~~~~~l~~L~~L~l~~c~~~ 869 (887)
|. +..... . .. ..+.|++|++.+|... ..++..+..+++|+.+++++|+-.
T Consensus 231 n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 231 NN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred Cc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 75 332100 0 11 2479999999999743 234556667799999999998743
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.00 E-value=6.8e-09 Score=111.20 Aligned_cols=282 Identities=17% Similarity=0.092 Sum_probs=149.7
Q ss_pred CccccchhcHHHHHHHHhcC---CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNG---RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (887)
..|||+++.+++|..++... ......+.++|++|+|||+||+.+++.. ...+ ..+..+...... .+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~~-~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKPG-DLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCch-hHHHHHH
Confidence 36999999999999888642 2234567899999999999999999852 2222 112211111111 1222222
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChhHHHHHHHhcCCCCCCcEEEE
Q 048733 248 EFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKIDFWRDVEHALLDNKKCSRIIV 327 (887)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiv 327 (887)
.+....- . .-++....+ ....+.+...+.+.+..+|+++..+...|.. ...+.+-|..
T Consensus 78 ~~~~~~v--------------l-~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~li~~ 135 (305)
T TIGR00635 78 NLEEGDV--------------L-FIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL------DLPPFTLVGA 135 (305)
T ss_pred hcccCCE--------------E-EEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee------cCCCeEEEEe
Confidence 2211000 0 000011111 1223445555555566666666554443321 1122455666
Q ss_pred EccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHhhhhcCCC
Q 048733 328 TTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSTKN 407 (887)
Q Consensus 328 TtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~ 407 (887)
||+...+....... -...+.+++++.++..+++.+.+.... ..-..+....|++.|+|.|-.+..++..+
T Consensus 136 t~~~~~l~~~l~sR-~~~~~~l~~l~~~e~~~il~~~~~~~~-----~~~~~~al~~ia~~~~G~pR~~~~ll~~~---- 205 (305)
T TIGR00635 136 TTRAGMLTSPLRDR-FGIILRLEFYTVEELAEIVSRSAGLLN-----VEIEPEAALEIARRSRGTPRIANRLLRRV---- 205 (305)
T ss_pred cCCccccCHHHHhh-cceEEEeCCCCHHHHHHHHHHHHHHhC-----CCcCHHHHHHHHHHhCCCcchHHHHHHHH----
Confidence 77765433321110 015679999999999999998875322 11225677889999999997665444322
Q ss_pred CCHHHHHHHHHHhccccCCCCCccchHHHHhhcccCCChhhHHHHh-hhcccCCCcccChhHHHHHHHHcCccccCCCCC
Q 048733 408 RIVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYYDLPHHLKSCLL-YFGLFPESCKINRGRLIRLWIAEGLVQYSKRFT 486 (887)
Q Consensus 408 ~~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~Lp~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 486 (887)
|..... .................+...|..++++.+..+. .++.++.+ .+....+.... |.
T Consensus 206 -----~~~a~~-~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~-------- 267 (305)
T TIGR00635 206 -----RDFAQV-RGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE-------- 267 (305)
T ss_pred -----HHHHHH-cCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC--------
Confidence 111000 0000000001112223356678889988877666 55666533 44433333222 11
Q ss_pred HHHHHHHHHH-HHhhcCCeeeee
Q 048733 487 SEQVAAEYLD-ELIDRSLVQVSN 508 (887)
Q Consensus 487 ~e~~~~~~l~-~L~~~sll~~~~ 508 (887)
....++..++ .|++++|+....
T Consensus 268 ~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 268 DADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred CcchHHHhhhHHHHHcCCcccCC
Confidence 1234667788 699999997443
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.00 E-value=4.7e-11 Score=121.55 Aligned_cols=87 Identities=17% Similarity=0.083 Sum_probs=68.7
Q ss_pred hhhcCCCcceeEEEecccCCcC---cCcCcccceeeeCcCCCceeE-EEcCCCccCccEEEEccCCCCCccccccccCCC
Q 048733 782 WILKLKNLIGSRLILSGLTEDP---ISWFPKLRKLVLLNFEAVKSV-IIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRN 857 (887)
Q Consensus 782 ~~~~l~~L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~-~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~ 857 (887)
.|..|++|++|+|++|.++... +.+..+++.|.|..+. ++.+ ...+..+..|+.|++++|+...-.|..+..+.+
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 4667999999999999987754 4456677777777654 4444 223567899999999999976677888999999
Q ss_pred CCEEEEEechhhhh
Q 048733 858 LELLTFHDMSKQVC 871 (887)
Q Consensus 858 L~~L~l~~c~~~~~ 871 (887)
|.+|++-.|| |.
T Consensus 348 l~~l~l~~Np--~~ 359 (498)
T KOG4237|consen 348 LSTLNLLSNP--FN 359 (498)
T ss_pred eeeeehccCc--cc
Confidence 9999999888 55
No 34
>PF05729 NACHT: NACHT domain
Probab=99.00 E-value=3.9e-09 Score=102.10 Aligned_cols=144 Identities=19% Similarity=0.264 Sum_probs=88.4
Q ss_pred EEEEEEccCCCCHHHHHHHHhcccCccCC----CceeEEEEeCCCCCHH---HHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTH----FSCRAWVTVGKEYNKN---DLLRTIIKEFHRLSKHGRDGPDRHAEGP 267 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 267 (887)
+++.|+|.+|+||||+++.++........ +...+|++........ .+...|..+.....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-------------- 66 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-------------- 66 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch--------------
Confidence 47899999999999999999886332222 4566677765543322 22222222221110
Q ss_pred CCCCccccccCCHHHHHHHHHHHh-CCCceEEEEeccCChhH---------HHHHHHhc-CC-CCCCcEEEEEccchhHH
Q 048733 268 LLPTPEEIHNMEETDLITTLRDHL-KDKSYMVVLDDVWKIDF---------WRDVEHAL-LD-NKKCSRIIVTTRHMNVA 335 (887)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~~~---------~~~l~~~l-~~-~~~gs~iivTtR~~~v~ 335 (887)
......+...+ +.++++||||+++.... +..+...+ .. ...+.++|||+|.....
T Consensus 67 -------------~~~~~~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~ 133 (166)
T PF05729_consen 67 -------------APIEELLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFP 133 (166)
T ss_pred -------------hhhHHHHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHH
Confidence 01111222222 56899999999975421 33333333 32 35689999999997764
Q ss_pred hhhccCCCcceeecCCCChhhHHHHHHHhh
Q 048733 336 KFCKLSSSVRIHELETLPPDEAWKLFCRKA 365 (887)
Q Consensus 336 ~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 365 (887)
...........+++++|++++..+++.+..
T Consensus 134 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 134 DLRRRLKQAQILELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred HHHHhcCCCcEEEECCCCHHHHHHHHHHHh
Confidence 433222333689999999999999998764
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.86 E-value=4.7e-07 Score=102.99 Aligned_cols=306 Identities=11% Similarity=0.112 Sum_probs=162.2
Q ss_pred cCccccchhcHHHHHHHHhcC---CCCcEEEEEEccCCCCHHHHHHHHhcccCc---cCCCc--eeEEEEeCCCCCHHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNG---RSKRSVVAVVGEGGLGKTTLAGKLFNNEGL---KTHFS--CRAWVTVGKEYNKNDL 241 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~v~~~~~~~~~ 241 (887)
++.+.|||+++++|...|... .....++.|+|++|.|||++++.|.+.... ..... .+++|....-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 467899999999999988763 333467889999999999999999874211 11111 2567776666778888
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhC---CCceEEEEeccCChh--HHHHHHHhc
Q 048733 242 LRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLK---DKSYMVVLDDVWKID--FWRDVEHAL 316 (887)
Q Consensus 242 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~---~kr~LlVlDdv~~~~--~~~~l~~~l 316 (887)
+..|..++..... .......++...+...+. +...+||||+|+... .-+.+...+
T Consensus 834 YqvI~qqL~g~~P--------------------~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLF 893 (1164)
T PTZ00112 834 YQVLYKQLFNKKP--------------------PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLF 893 (1164)
T ss_pred HHHHHHHHcCCCC--------------------CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHH
Confidence 9999988844211 011223344555554442 224589999997542 111222222
Q ss_pred C-CCCCCcEEEE--EccchhH----HhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHh
Q 048733 317 L-DNKKCSRIIV--TTRHMNV----AKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKC 389 (887)
Q Consensus 317 ~-~~~~gs~iiv--TtR~~~v----~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c 389 (887)
. ....+++|+| .|..... ...+........+..+|.+.++-.+++..++-... ....+..++-+++.++...
T Consensus 894 R~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~-gVLdDdAIELIArkVAq~S 972 (1164)
T PTZ00112 894 DWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCK-EIIDHTAIQLCARKVANVS 972 (1164)
T ss_pred HHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHhhhhcC
Confidence 1 1223455544 3322111 11111111113467799999999999999875321 1112222333334333333
Q ss_pred CCCchHHHHHhhhhcCCCC---CHHHHHHHHHHhccccCCCCCccchHHHHhhcccCCChhhHHHHhhhcccCC---Ccc
Q 048733 390 GGLPLAIVAVGGLLSTKNR---IVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYYDLPHHLKSCLLYFGLFPE---SCK 463 (887)
Q Consensus 390 ~G~PLai~~~~~~l~~~~~---~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~Lp~~~k~cf~~~s~fp~---~~~ 463 (887)
|-.=.||.++-........ +.++-..+.+.+. ...+.-....||.+.|-.+..+...-+ ...
T Consensus 973 GDARKALDILRrAgEikegskVT~eHVrkAleeiE------------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~ 1040 (1164)
T PTZ00112 973 GDIRKALQICRKAFENKRGQKIVPRDITEATNQLF------------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFI 1040 (1164)
T ss_pred CHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHHH------------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCc
Confidence 3333444443333221111 1222222222210 011233456799998877665544322 224
Q ss_pred cChhHHHHHH--HHcCccccCCCCCHHHHHHHHHHHHhhcCCeeeee
Q 048733 464 INRGRLIRLW--IAEGLVQYSKRFTSEQVAAEYLDELIDRSLVQVSN 508 (887)
Q Consensus 464 i~~~~li~~w--~a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 508 (887)
++...+.... +++..-...+.....+...+|+.+|...|+|-...
T Consensus 1041 i~TGEVYerYk~Lce~~Gk~iGv~plTqRV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1041 IPYKKVLNRYKVLVETSGKYIGMCSNNELFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred eeHHHHHHHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCeEEecC
Confidence 5555555543 23311100111222226778899999999988765
No 36
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.83 E-value=1.5e-07 Score=97.46 Aligned_cols=225 Identities=18% Similarity=0.211 Sum_probs=123.8
Q ss_pred cCccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
+.+++|-+..+.++++ . +++....+||++|+||||||+.+... ....| ..++...+-.+-++++++..
T Consensus 29 Q~HLlg~~~~lrr~v~---~--~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr~i~e~a 96 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---A--GHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLREIIEEA 96 (436)
T ss_pred hHhhhCCCchHHHHHh---c--CCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHHHHHHHH
Confidence 4445555555554443 2 34566779999999999999999983 44444 33333333222233333222
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEE
Q 048733 250 HRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIV 327 (887)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 327 (887)
. +....|++.+|++|.|..- .+-+.+ ||.-..|.-|+|
T Consensus 97 ~-------------------------------------~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilI 136 (436)
T COG2256 97 R-------------------------------------KNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILI 136 (436)
T ss_pred H-------------------------------------HHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEE
Confidence 1 1223489999999999643 344433 455566777777
Q ss_pred --EccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCC--CChHHHHHHHHHHHHhCCCchH---HHHHh
Q 048733 328 --TTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGC--CPSELKELSQDILAKCGGLPLA---IVAVG 400 (887)
Q Consensus 328 --TtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~--~~~~~~~~~~~I~~~c~G~PLa---i~~~~ 400 (887)
||-|+...-.....+...++.+++|+.++..+++.+.+........ ...-.+++...|+..++|---+ .-.++
T Consensus 137 GATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~ 216 (436)
T COG2256 137 GATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELA 216 (436)
T ss_pred eccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 7777643222112233489999999999999999984432221111 1112245667788888885432 22333
Q ss_pred hhhcCCCC--CHHHHHHHHHHhccccCCC-CCccchHHHHhhcccCCCh
Q 048733 401 GLLSTKNR--IVSEWKKLFDRLGSMLGSD-PHLKDCNRVLSEGYYDLPH 446 (887)
Q Consensus 401 ~~l~~~~~--~~~~w~~~~~~~~~~~~~~-~~~~~i~~~l~~sy~~Lp~ 446 (887)
..+..... +.+..+..+..-......+ +...++..++.-|...=.+
T Consensus 217 ~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~ 265 (436)
T COG2256 217 ALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDP 265 (436)
T ss_pred HHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCc
Confidence 33333321 2344444444433322222 2334555556555554433
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.79 E-value=3.6e-10 Score=116.30 Aligned_cols=278 Identities=19% Similarity=0.165 Sum_probs=142.6
Q ss_pred ceeEEEeecCCCCCccccccccCCCceeEEEEecCCC-CC--CCccccccccccceeecCCCceeeecCccccc--cchh
Q 048733 573 KVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSP-IN--YLPEGVGNLFNLHLLNARNTKILDLAHTFVSE--LPEE 647 (887)
Q Consensus 573 ~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~--~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~--lp~~ 647 (887)
.++.|.+.|+....+..+..+..+++++..|.+.+|. ++ .+-+.-..+.+|++|+|..|. .++. |-..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~-------~iT~~~Lk~l 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS-------SITDVSLKYL 211 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc-------hhHHHHHHHH
Confidence 4556666666665555555666777777777777775 22 111222356677777777653 2221 1112
Q ss_pred hhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHh----hccccccceeEEe
Q 048733 648 IRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKEL----MMLRQLNMLSIRR 723 (887)
Q Consensus 648 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l----~~l~~L~~L~l~~ 723 (887)
...+++|++|++++|..++++.+. .+ ...++++..+. +.+ ......+.+ +.+..+-++++..
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~-----~~---~rG~~~l~~~~----~kG--C~e~~le~l~~~~~~~~~i~~lnl~~ 277 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQ-----AL---QRGCKELEKLS----LKG--CLELELEALLKAAAYCLEILKLNLQH 277 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcch-----HH---hccchhhhhhh----hcc--cccccHHHHHHHhccChHhhccchhh
Confidence 235677777777777555543211 11 12222233332 011 111111111 1222233333222
Q ss_pred -ccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc--C--CCChhhhcCCCcceeEEEecc
Q 048733 724 -QNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM--K--KLPDWILKLKNLIGSRLILSG 798 (887)
Q Consensus 724 -~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--~--~lp~~~~~l~~L~~L~L~~~~ 798 (887)
+..+...+...-..+..|+.|..+++...+...+..+...+.+|+.|.+.++. + .+...-.+.+.|+.+++..|.
T Consensus 278 c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 278 CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 22333334444444556666666665544444445555555566666666643 1 122122345666777666665
Q ss_pred cCCcC-----cCcCcccceeeeCcCCCceeE-----EEcCCCccCccEEEEccCCCCCc-cccccccCCCCCEEEEEech
Q 048733 799 LTEDP-----ISWFPKLRKLVLLNFEAVKSV-----IIEKGAMPDIRELWIGPCPLLME-IPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 799 l~~~~-----~~~~~~L~~L~l~~~~~l~~~-----~~~~~~lp~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~ 867 (887)
...+. -..++.|+.|.++.|....+- .....++..|+.|.+.+|+.+.. .-..+.+|++|+.+++.+|.
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 33321 125677777777766543322 22223567788888888886553 33455677888888888887
Q ss_pred hhhh
Q 048733 868 KQVC 871 (887)
Q Consensus 868 ~~~~ 871 (887)
.-+.
T Consensus 438 ~vtk 441 (483)
T KOG4341|consen 438 DVTK 441 (483)
T ss_pred hhhh
Confidence 6554
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.74 E-value=1e-09 Score=112.02 Aligned_cols=80 Identities=19% Similarity=0.302 Sum_probs=53.3
Q ss_pred ceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCC-ccccccccccceeecCCCceeeecCccccccchhh-hc
Q 048733 573 KVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYL-PEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEI-RN 650 (887)
Q Consensus 573 ~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i-~~ 650 (887)
....+.+..+.. ..+++..|+.++.||.|||++|.|+.+ |..+..|..|..|-+.++ |.|..+|+.. .+
T Consensus 68 ~tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~-------NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 68 ETVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN-------NKITDLPKGAFGG 138 (498)
T ss_pred cceEEEeccCCc--ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC-------CchhhhhhhHhhh
Confidence 344555555554 456678889999999999999998866 788888888887766662 2455555532 24
Q ss_pred ccccCeeeecc
Q 048733 651 LKKLRSLIVFH 661 (887)
Q Consensus 651 l~~L~~L~l~~ 661 (887)
|..|+.|.+.-
T Consensus 139 L~slqrLllNa 149 (498)
T KOG4237|consen 139 LSSLQRLLLNA 149 (498)
T ss_pred HHHHHHHhcCh
Confidence 55555544443
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=9.8e-10 Score=107.90 Aligned_cols=173 Identities=16% Similarity=0.154 Sum_probs=121.4
Q ss_pred cccccccccccccccCceecchHHHHHhhccccccceeEEe-ccCChhHHHHHHhcccCCcEEEEeecCCccccccCccc
Q 048733 683 GSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRR-QNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLS 761 (887)
Q Consensus 683 ~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~ 761 (887)
..|..|+.|. +.++..+......+.+-.+|+.|+++. +.....++.-.+.+++.|..|+++||.......--...
T Consensus 207 s~C~kLk~lS----lEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~ 282 (419)
T KOG2120|consen 207 SQCSKLKNLS----LEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA 282 (419)
T ss_pred HHHHhhhhcc----ccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh
Confidence 3455555555 556777788888899999999999998 66666667778889999999999999765443101111
Q ss_pred ccccccceeEEeeccC-----CCChhhhcCCCcceeEEEecccCCcC----cCcCcccceeeeCcCCCce-eEEEcCCCc
Q 048733 762 SPPQHLQYLSLRGNMK-----KLPDWILKLKNLIGSRLILSGLTEDP----ISWFPKLRKLVLLNFEAVK-SVIIEKGAM 831 (887)
Q Consensus 762 ~~~~~L~~L~L~~~~~-----~lp~~~~~l~~L~~L~L~~~~l~~~~----~~~~~~L~~L~l~~~~~l~-~~~~~~~~l 831 (887)
.-..+|..|+|+|+.. .+......+++|..|+|++|....+. +..|+.|++|.++.|..+- +--.+.+.+
T Consensus 283 hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~ 362 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSK 362 (419)
T ss_pred hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccC
Confidence 1223899999999742 23333457899999999998744332 3379999999999987543 223456789
Q ss_pred cCccEEEEccCCCCCccccccccCCCCC
Q 048733 832 PDIRELWIGPCPLLMEIPIGIDHLRNLE 859 (887)
Q Consensus 832 p~L~~L~l~~c~~l~~lp~~~~~l~~L~ 859 (887)
|.|.+|++.+|-.-+..--....|++|+
T Consensus 363 psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 363 PSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred cceEEEEeccccCchHHHHHHHhCcccc
Confidence 9999999998864443333334566654
No 40
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.71 E-value=1.7e-07 Score=104.12 Aligned_cols=178 Identities=21% Similarity=0.229 Sum_probs=104.6
Q ss_pred CccccchhcHHH---HHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHH
Q 048733 171 DEVVGIESIKDK---LIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (887)
Q Consensus 171 ~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (887)
+++||++..+.. +..++.... ...+.|+|++|+||||||+.+++. ....| +.++....-.+-++.+++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLREVIE 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHHHHHH
Confidence 368888877655 777776543 456788999999999999999984 22222 322221111111222222
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH-hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcE
Q 048733 248 EFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH-LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSR 324 (887)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 324 (887)
. .... ..+++.+|++|+++.. .+.+.+...+.. |..
T Consensus 83 ~--------------------------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~i 121 (413)
T PRK13342 83 E--------------------------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTI 121 (413)
T ss_pred H--------------------------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcE
Confidence 1 1111 1457889999999865 345555554433 444
Q ss_pred EEE--EccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHh
Q 048733 325 IIV--TTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVG 400 (887)
Q Consensus 325 iiv--TtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 400 (887)
++| ||.+..........+....+.+.+++.++.+.++.+.+...... . ..-..+....|++.|+|.|..+..+.
T Consensus 122 ilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~-~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 122 TLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERG-L-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred EEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcC-C-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 444 44443221111111223789999999999999999865321110 0 12235667889999999987654433
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=4.3e-09 Score=109.07 Aligned_cols=228 Identities=18% Similarity=0.136 Sum_probs=147.2
Q ss_pred CCCceeEEEEecCCCCCCCcc--ccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccch
Q 048733 595 ANFKLMKVLDLEDSPINYLPE--GVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPT 672 (887)
Q Consensus 595 ~~~~~Lr~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 672 (887)
++++.||...|.++.+...+. ....|++++.|||+.|- ..+...+-..+..|++|+.|+++.|.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-----~~nw~~v~~i~eqLp~Le~LNls~Nr--------- 183 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-----FHNWFPVLKIAEQLPSLENLNLSSNR--------- 183 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhh-----HHhHHHHHHHHHhcccchhccccccc---------
Confidence 577888888888888776553 56678888888777642 11233344445578888888888762
Q ss_pred hhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCc
Q 048733 673 EAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKE 752 (887)
Q Consensus 673 ~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 752 (887)
. + .+ .+.... ..+..|+.|.++..+....++...+..+++|+.|.+..|...
T Consensus 184 --l-------------~---------~~-~~s~~~---~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~ 235 (505)
T KOG3207|consen 184 --L-------------S---------NF-ISSNTT---LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII 235 (505)
T ss_pred --c-------------c---------CC-ccccch---hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc
Confidence 0 0 00 001111 155667778887645556677778888999999999988521
Q ss_pred cccccCcccccccccceeEEeecc-CCCC--hhhhcCCCcceeEEEecccCCcC---c------CcCcccceeeeCcCCC
Q 048733 753 EILDLQSLSSPPQHLQYLSLRGNM-KKLP--DWILKLKNLIGSRLILSGLTEDP---I------SWFPKLRKLVLLNFEA 820 (887)
Q Consensus 753 ~~~~l~~l~~~~~~L~~L~L~~~~-~~lp--~~~~~l~~L~~L~L~~~~l~~~~---~------~~~~~L~~L~l~~~~~ 820 (887)
.... .+.. -++.|+.|+|++|. -.++ .-.+.|+.|..|+++.|.+.+.. . ..||+|++|.+..++
T Consensus 236 ~~~~-~~~~-i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~- 312 (505)
T KOG3207|consen 236 LIKA-TSTK-ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN- 312 (505)
T ss_pred ceec-chhh-hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-
Confidence 1111 1112 23389999999874 3344 35678999999999999987632 2 379999999999875
Q ss_pred ceeEEE--cCCCccCccEEEEccCCCCCcc----ccccccCCCCCEEEEEech
Q 048733 821 VKSVII--EKGAMPDIRELWIGPCPLLMEI----PIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 821 l~~~~~--~~~~lp~L~~L~l~~c~~l~~l----p~~~~~l~~L~~L~l~~c~ 867 (887)
+.+|+. ....+++|+.|.+..++.-+.- -..|..+++|..|+=.+|.
T Consensus 313 I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~ 365 (505)
T KOG3207|consen 313 IRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDIS 365 (505)
T ss_pred cccccccchhhccchhhhhhcccccccccccceeEEeeeehhhhhhhcccccC
Confidence 445543 2345788888887766633321 1244566666666544544
No 42
>PRK06893 DNA replication initiation factor; Validated
Probab=98.66 E-value=3.2e-07 Score=93.13 Aligned_cols=149 Identities=13% Similarity=0.188 Sum_probs=89.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPE 273 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 273 (887)
.+.+.|+|++|+|||+|++.+++. .......+.|+++.... ...
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~------------------------------- 82 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFS------------------------------- 82 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhh-------------------------------
Confidence 357889999999999999999985 22222344566643100 000
Q ss_pred ccccCCHHHHHHHHHHHhCCCceEEEEeccCCh---hHHHHH-HHhcCCC-CCCcEEE-EEccc---------hhHHhhh
Q 048733 274 EIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI---DFWRDV-EHALLDN-KKCSRII-VTTRH---------MNVAKFC 338 (887)
Q Consensus 274 ~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l-~~~l~~~-~~gs~ii-vTtR~---------~~v~~~~ 338 (887)
. .+.+.++ +.-+|||||+|.. ..|+.. ...+... ..|..+| +|+.. +.+.+.+
T Consensus 83 -------~----~~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl 150 (229)
T PRK06893 83 -------P----AVLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRL 150 (229)
T ss_pred -------H----HHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHH
Confidence 0 1111121 2358999999863 456532 2323221 2345554 45544 3444444
Q ss_pred ccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 048733 339 KLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVA 398 (887)
Q Consensus 339 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 398 (887)
... ..+++++++.++.++++.+.+.... ..-.+++..-|++.+.|..-.+..
T Consensus 151 ~~g---~~~~l~~pd~e~~~~iL~~~a~~~~-----l~l~~~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 151 TWG---EIYQLNDLTDEQKIIVLQRNAYQRG-----IELSDEVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred hcC---CeeeCCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHhccCCHHHHHH
Confidence 433 6889999999999999999886432 112256777888888876654443
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=9.9e-09 Score=106.46 Aligned_cols=204 Identities=15% Similarity=0.104 Sum_probs=129.6
Q ss_pred cCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCC---CCccccccccccceeecCCCceeeecCcccccc
Q 048733 568 SIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPIN---YLPEGVGNLFNLHLLNARNTKILDLAHTFVSEL 644 (887)
Q Consensus 568 ~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~---~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~l 644 (887)
..++++||...+.++.-. ..........|++++.|||++|-+. .+-+-..+|++|+.|+|+.|.-.....+..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-- 193 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-- 193 (505)
T ss_pred hhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch--
Confidence 456788888888776541 1111146788999999999999766 3345567899999999998762211111111
Q ss_pred chhhhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEec
Q 048733 645 PEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQ 724 (887)
Q Consensus 645 p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 724 (887)
..+++|+.|.++.|+ .. .......+..+++|..|.+..|
T Consensus 194 ----~~l~~lK~L~l~~CG------------------------------------ls-~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 194 ----LLLSHLKQLVLNSCG------------------------------------LS-WKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred ----hhhhhhheEEeccCC------------------------------------CC-HHHHHHHHHhCCcHHHhhhhcc
Confidence 157788888888881 11 2233444567888888888864
Q ss_pred c-CChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-C--CCChh-----hhcCCCcceeEEE
Q 048733 725 N-GNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-K--KLPDW-----ILKLKNLIGSRLI 795 (887)
Q Consensus 725 ~-~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~--~lp~~-----~~~l~~L~~L~L~ 795 (887)
. ..... ....-+..|+.|+|++|.......+......+ .|..|+++.+. . .+|.. ...+++|++|++.
T Consensus 233 ~~~~~~~--~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~-~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 233 EIILIKA--TSTKILQTLQELDLSNNNLIDFDQGYKVGTLP-GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred cccceec--chhhhhhHHhhccccCCccccccccccccccc-chhhhhccccCcchhcCCCccchhhhcccccceeeecc
Confidence 2 11111 12233567899999988665543333334444 88888888764 2 34443 3457999999999
Q ss_pred ecccCCcC----cCcCcccceeeeCcC
Q 048733 796 LSGLTEDP----ISWFPKLRKLVLLNF 818 (887)
Q Consensus 796 ~~~l~~~~----~~~~~~L~~L~l~~~ 818 (887)
.|++.+.+ +..+++|+.|.+...
T Consensus 310 ~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 310 ENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cCccccccccchhhccchhhhhhcccc
Confidence 99885532 335667777775544
No 44
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=1.6e-06 Score=92.74 Aligned_cols=180 Identities=18% Similarity=0.260 Sum_probs=116.5
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhccc----CccCCCceeEEEEe-CCCCCHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNE----GLKTHFSCRAWVTV-GKEYNKNDLLRTI 245 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~v-~~~~~~~~~~~~i 245 (887)
.+++|-+..++.+..++..+. -.+...++|+.|+||||+|+.+++.- ....|++...|... +......+ .+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 357898888999999887653 34577899999999999999998741 12345565555442 22233322 2333
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEecc--CChhHHHHHHHhcCCCCCCc
Q 048733 246 IKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDV--WKIDFWRDVEHALLDNKKCS 323 (887)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv--~~~~~~~~l~~~l~~~~~gs 323 (887)
.+.+.... ..+++-++|+|++ .+.+.++.+...+.....++
T Consensus 82 ~~~~~~~p-------------------------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t 124 (313)
T PRK05564 82 IEEVNKKP-------------------------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGV 124 (313)
T ss_pred HHHHhcCc-------------------------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCe
Confidence 33322110 1234556677766 45568999999998888889
Q ss_pred EEEEEccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 048733 324 RIIVTTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAV 399 (887)
Q Consensus 324 ~iivTtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 399 (887)
.+|++|.+...... ...+....+++.++++++....+.+...+. ..+.++.++..++|.|.-+...
T Consensus 125 ~~il~~~~~~~ll~-TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 125 FIILLCENLEQILD-TIKSRCQIYKLNRLSKEEIEKFISYKYNDI---------KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred EEEEEeCChHhCcH-HHHhhceeeeCCCcCHHHHHHHHHHHhcCC---------CHHHHHHHHHHcCCCHHHHHHH
Confidence 99888876542211 111223789999999999988887653111 1344677899999998765433
No 45
>PTZ00202 tuzin; Provisional
Probab=98.60 E-value=7e-06 Score=86.92 Aligned_cols=167 Identities=14% Similarity=0.173 Sum_probs=105.6
Q ss_pred CcccCccccchhcHHHHHHHHhcCC-CCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHH
Q 048733 167 FVEDDEVVGIESIKDKLIDLMLNGR-SKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTI 245 (887)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 245 (887)
+.+...|+||+.+..+|...|.+.+ ...+++.|+|++|+|||||++.+..... + .+++.-.. +..++++.|
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHHHHH
Confidence 3456789999999999999997643 3456999999999999999999987422 1 23333233 679999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-----C-CCceEEEEecc--CChh-HHHHHHHhc
Q 048733 246 IKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-----K-DKSYMVVLDDV--WKID-FWRDVEHAL 316 (887)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~-~kr~LlVlDdv--~~~~-~~~~l~~~l 316 (887)
+.+++.... ....++...|.+.+ . |++.+||+-== .+.. .+.+. ..|
T Consensus 330 L~ALGV~p~-----------------------~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~l 385 (550)
T PTZ00202 330 VKALGVPNV-----------------------EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VAL 385 (550)
T ss_pred HHHcCCCCc-----------------------ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHH
Confidence 999986321 11234444444433 2 66667766322 2222 22222 233
Q ss_pred CCCCCCcEEEEEccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhh
Q 048733 317 LDNKKCSRIIVTTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKA 365 (887)
Q Consensus 317 ~~~~~gs~iivTtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 365 (887)
.....-|+|++---.+.........+....|.+++++.++|.++-.+..
T Consensus 386 a~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 386 ACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred HccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 4444467887755444332222223344788999999999998777654
No 46
>PF13173 AAA_14: AAA domain
Probab=98.55 E-value=3.3e-07 Score=83.81 Aligned_cols=123 Identities=21% Similarity=0.259 Sum_probs=81.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPE 273 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 273 (887)
.+++.|.|+.|+|||||+++++++.. ....+++++..+.......
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-------------------------------- 46 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-------------------------------- 46 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh--------------------------------
Confidence 36899999999999999999997522 2234556654432211000
Q ss_pred ccccCCHHHHHHHHHHHhCCCceEEEEeccCChhHHHHHHHhcCCCCCCcEEEEEccchhHHhhh---ccCCCcceeecC
Q 048733 274 EIHNMEETDLITTLRDHLKDKSYMVVLDDVWKIDFWRDVEHALLDNKKCSRIIVTTRHMNVAKFC---KLSSSVRIHELE 350 (887)
Q Consensus 274 ~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~---~~~~~~~~~~l~ 350 (887)
..+ +.+.+.+....++.+|+||++.....|......+.+.....+|++|+........- ...+....+++.
T Consensus 47 -----~~~-~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~ 120 (128)
T PF13173_consen 47 -----DPD-LLEYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELY 120 (128)
T ss_pred -----hhh-hHHHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEEC
Confidence 000 23334444444778999999998888888888887766778999999887655321 112334678999
Q ss_pred CCChhhH
Q 048733 351 TLPPDEA 357 (887)
Q Consensus 351 ~L~~~e~ 357 (887)
||+-.|.
T Consensus 121 Plsf~E~ 127 (128)
T PF13173_consen 121 PLSFREF 127 (128)
T ss_pred CCCHHHh
Confidence 9998763
No 47
>PRK04195 replication factor C large subunit; Provisional
Probab=98.53 E-value=7.4e-06 Score=93.04 Aligned_cols=245 Identities=16% Similarity=0.144 Sum_probs=135.4
Q ss_pred CccccchhcHHHHHHHHhcC--CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNG--RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKE 248 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 248 (887)
.+++|.+..++++.+|+..- ....+.+.|+|++|+||||+|+.+++.. . |. .+-++.+...+ .+.+..++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el--~--~~-~ielnasd~r~-~~~i~~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY--G--WE-VIELNASDQRT-ADVIERVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc--C--CC-EEEEccccccc-HHHHHHHHHH
Confidence 46899999999999998752 1225789999999999999999999952 1 22 22233333222 2223333322
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh------HHHHHHHhcCCCCCC
Q 048733 249 FHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID------FWRDVEHALLDNKKC 322 (887)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~g 322 (887)
..... .....++-+||||+++... .+..+...+... +
T Consensus 88 ~~~~~-----------------------------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~ 130 (482)
T PRK04195 88 AATSG-----------------------------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--K 130 (482)
T ss_pred hhccC-----------------------------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--C
Confidence 21100 0011367799999997652 355555555422 3
Q ss_pred cEEEEEccchh-HHh-hhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHh
Q 048733 323 SRIIVTTRHMN-VAK-FCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVG 400 (887)
Q Consensus 323 s~iivTtR~~~-v~~-~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 400 (887)
..||+|+.+.. ... ... .....+.+.+++.++....+.+.+...+. . -..++...|++.++|..-.+....
T Consensus 131 ~~iIli~n~~~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~egi--~---i~~eaL~~Ia~~s~GDlR~ain~L 203 (482)
T PRK04195 131 QPIILTANDPYDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICRKEGI--E---CDDEALKEIAERSGGDLRSAINDL 203 (482)
T ss_pred CCEEEeccCccccchhhHh--ccceEEEecCCCHHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44666654321 111 111 12378999999999998888877643321 1 124677889999998665444322
Q ss_pred hhhcCC-CC-CHHHHHHHHHHhccccCCCCCccchHHHHhhccc-CCChhhHHHHhhhcccCCCcccChhHHHHHHHHcC
Q 048733 401 GLLSTK-NR-IVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYY-DLPHHLKSCLLYFGLFPESCKINRGRLIRLWIAEG 477 (887)
Q Consensus 401 ~~l~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~-~Lp~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g 477 (887)
..+... .. +......+.. .....+++.++..-+. .-+......+..+. ++ ...+-.|+.+.
T Consensus 204 q~~a~~~~~it~~~v~~~~~--------~d~~~~if~~l~~i~~~k~~~~a~~~~~~~~-------~~-~~~i~~~l~en 267 (482)
T PRK04195 204 QAIAEGYGKLTLEDVKTLGR--------RDREESIFDALDAVFKARNADQALEASYDVD-------ED-PDDLIEWIDEN 267 (482)
T ss_pred HHHhcCCCCCcHHHHHHhhc--------CCCCCCHHHHHHHHHCCCCHHHHHHHHHccc-------CC-HHHHHHHHHhc
Confidence 223222 11 2222222211 1112356666665444 22333333322211 22 24677899999
Q ss_pred cccc
Q 048733 478 LVQY 481 (887)
Q Consensus 478 ~i~~ 481 (887)
+...
T Consensus 268 ~~~~ 271 (482)
T PRK04195 268 IPKE 271 (482)
T ss_pred cccc
Confidence 8754
No 48
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=2.3e-06 Score=97.23 Aligned_cols=198 Identities=16% Similarity=0.121 Sum_probs=114.9
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
+++||.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+.+.......+. +..+..-...+.|..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~--- 84 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDE--- 84 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhc---
Confidence 478999999999999988654 234667999999999999998887422111110 011111111122211
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh----CCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL----KDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSR 324 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 324 (887)
... .+. .+ .. .......+++.+.+.... .++.-++|||+++.. ..|+.++..+.......+
T Consensus 85 -G~h--~Dv----iE-----ID-Aas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 85 -GRF--VDY----VE-----MD-AASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred -CCC--ceE----EE-----ec-ccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 000 000 00 00 001112233333332211 245568999999876 458888888776666778
Q ss_pred EEEEccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCc-hHHHH
Q 048733 325 IIVTTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLP-LAIVA 398 (887)
Q Consensus 325 iivTtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P-Lai~~ 398 (887)
+|++|.+..... ....+....+.+++++.++..+.+.+.+...+ ..-..+..+.|++.++|.. -|+..
T Consensus 152 FILaTtd~~KIp-~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-----I~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 152 FILATTDPQKIP-VTVLSRCLQFNLKQMPAGHIVSHLERILGEER-----IAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EEEEECChhhcc-chhhhheEEEecCCcCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 877777643221 11122337899999999999999988763322 1123567788999998865 35444
No 49
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=4.3e-06 Score=91.20 Aligned_cols=193 Identities=15% Similarity=0.157 Sum_probs=110.4
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
++++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++......... ......-....++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 468999999999999887653 345678999999999999999987421111100 000000011111111000
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-----CCCceEEEEeccCChh--HHHHHHHhcCCCCCCc
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-----KDKSYMVVLDDVWKID--FWRDVEHALLDNKKCS 323 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs 323 (887)
.... . .. .......+++. .+.+.+ .+++-++|+|+++... .++.+...+.......
T Consensus 88 ~d~~--------------~-~~-~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~ 150 (363)
T PRK14961 88 LDLI--------------E-ID-AASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHI 150 (363)
T ss_pred CceE--------------E-ec-ccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 0000 0 00 00001122222 222221 2345699999998664 5777887777666667
Q ss_pred EEEEEccch-hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchH
Q 048733 324 RIIVTTRHM-NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLA 395 (887)
Q Consensus 324 ~iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLa 395 (887)
++|++|.+. .+..... +....+++++++.++..+.+.+.+-..+ ..-.++.+..|++.++|.|-.
T Consensus 151 ~fIl~t~~~~~l~~tI~--SRc~~~~~~~l~~~el~~~L~~~~~~~g-----~~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 151 KFILATTDVEKIPKTIL--SRCLQFKLKIISEEKIFNFLKYILIKES-----IDTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred EEEEEcCChHhhhHHHH--hhceEEeCCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHH
Confidence 777766543 3322221 2237899999999999988887653321 112246677899999998853
No 50
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.50 E-value=1.6e-06 Score=88.08 Aligned_cols=158 Identities=18% Similarity=0.214 Sum_probs=97.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTP 272 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 272 (887)
....+.+||++|+||||||+.+.+..+-.. ..+|..|....-..-.++|+++....
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~-------------------- 216 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNE-------------------- 216 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHH--------------------
Confidence 366788999999999999999998633322 45677766554444455555543221
Q ss_pred cccccCCHHHHHHHHHHHhCCCceEEEEeccCC--hhHHHHHHHhcCCCCCCcEEEE--EccchhHHhhhccCCCcceee
Q 048733 273 EEIHNMEETDLITTLRDHLKDKSYMVVLDDVWK--IDFWRDVEHALLDNKKCSRIIV--TTRHMNVAKFCKLSSSVRIHE 348 (887)
Q Consensus 273 ~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v~~~~~~~~~~~~~~ 348 (887)
..+.++|.+|++|.|.. ..+-+. .||.-.+|.-++| ||.++...-.....+...++-
T Consensus 217 ----------------~~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~Vfv 277 (554)
T KOG2028|consen 217 ----------------KSLTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFV 277 (554)
T ss_pred ----------------HhhhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeE
Confidence 12456889999999953 333332 4676677877777 787764322111112237999
Q ss_pred cCCCChhhHHHHHHHhhc--C-CCCCC-CCCh----HHHHHHHHHHHHhCCCc
Q 048733 349 LETLPPDEAWKLFCRKAF--G-PSSGG-CCPS----ELKELSQDILAKCGGLP 393 (887)
Q Consensus 349 l~~L~~~e~~~lf~~~~~--~-~~~~~-~~~~----~~~~~~~~I~~~c~G~P 393 (887)
|++|..++-..++.+..- + ...+. ..+. -...+..-++..|.|-.
T Consensus 278 LekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 278 LEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred eccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 999999999988887432 1 11110 1111 23455666777777754
No 51
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.49 E-value=1.5e-06 Score=88.63 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=96.5
Q ss_pred chhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCC
Q 048733 176 IESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKH 255 (887)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~ 255 (887)
.+..++.+..++... ....+.|+|++|+|||+||+.+++... ......++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~------~~---------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQ------AD---------- 81 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHH------hH----------
Confidence 344566666665432 345788999999999999999998522 2223345555432110 00
Q ss_pred CCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh---HHH-HHHHhcCC-CCCCcEEEEEcc
Q 048733 256 GRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID---FWR-DVEHALLD-NKKCSRIIVTTR 330 (887)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~iivTtR 330 (887)
. .+...+++ .-+|||||++... .|. .+...+.. ...+.++|+||+
T Consensus 82 -------------------------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~ 131 (226)
T TIGR03420 82 -------------------------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGR 131 (226)
T ss_pred -------------------------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 0 01111222 2489999997653 333 33333322 123447889888
Q ss_pred chhHH------hhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHh
Q 048733 331 HMNVA------KFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVG 400 (887)
Q Consensus 331 ~~~v~------~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 400 (887)
..... ...........+++++++.++...++.+.+-... ..-..+..+.|++.+.|+|..+..+.
T Consensus 132 ~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-----~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 132 AAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG-----LQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred CChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 53211 1111111125789999999999998887542211 11224566778888888887666543
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=1.9e-08 Score=98.96 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=97.8
Q ss_pred HhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCC
Q 048733 709 ELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLK 787 (887)
Q Consensus 709 ~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~ 787 (887)
.......|..|++++|. ...+-.+..-.+.++.|+++.|..... ..+...+ +|+.|+|++|. ..+..|-..+.
T Consensus 279 ~~dTWq~LtelDLS~N~--I~~iDESvKL~Pkir~L~lS~N~i~~v---~nLa~L~-~L~~LDLS~N~Ls~~~Gwh~KLG 352 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNL--ITQIDESVKLAPKLRRLILSQNRIRTV---QNLAELP-QLQLLDLSGNLLAECVGWHLKLG 352 (490)
T ss_pred ecchHhhhhhccccccc--hhhhhhhhhhccceeEEeccccceeee---hhhhhcc-cceEeecccchhHhhhhhHhhhc
Confidence 34445667888888653 233455666678999999999876654 3344444 99999999985 67777888999
Q ss_pred CcceeEEEecccCCc-CcCcCcccceeeeCcCCCceeE--EEcCCCccCccEEEEccCCCCCcccc
Q 048733 788 NLIGSRLILSGLTED-PISWFPKLRKLVLLNFEAVKSV--IIEKGAMPDIRELWIGPCPLLMEIPI 850 (887)
Q Consensus 788 ~L~~L~L~~~~l~~~-~~~~~~~L~~L~l~~~~~l~~~--~~~~~~lp~L~~L~l~~c~~l~~lp~ 850 (887)
|+++|.|++|.+... .+..+-+|.+|++.++. ++++ ...+|++|+|+.|.+.+|| +..+|.
T Consensus 353 NIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred CEeeeehhhhhHhhhhhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC-ccccch
Confidence 999999999988653 34456677788887754 3333 3357899999999999999 555554
No 53
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.47 E-value=2.5e-06 Score=93.10 Aligned_cols=201 Identities=13% Similarity=0.074 Sum_probs=107.9
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCc-eeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFS-CRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
+.++|++..++.+..++..+. .+.+.++|++|+||||+|+.+++... ...+. ..+.++++... ......+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~------~~~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFF------DQGKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhh------hcchhhh
Confidence 468999999999999887653 34578999999999999999987421 11121 12333332211 0000000
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH---h--CCCceEEEEeccCChh--HHHHHHHhcCCCCCC
Q 048733 250 HRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH---L--KDKSYMVVLDDVWKID--FWRDVEHALLDNKKC 322 (887)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---L--~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~g 322 (887)
.... ..... ... .........+.+...++.. . .+.+-+||+||+.... ....+...+......
T Consensus 86 ~~~~----~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~ 155 (337)
T PRK12402 86 VEDP----RFAHF-----LGT-DKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRT 155 (337)
T ss_pred hcCc----chhhh-----hhh-hhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCC
Confidence 0000 00000 000 0000000112222222221 1 1345589999997553 345555555444455
Q ss_pred cEEEEEccchh-HHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 048733 323 SRIIVTTRHMN-VAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIV 397 (887)
Q Consensus 323 s~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 397 (887)
+++|+|+.+.. +..... .....+.+.+++.++...++.+.+-..+. .-..+....+++.++|.+-.+.
T Consensus 156 ~~~Il~~~~~~~~~~~L~--sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 156 CRFIIATRQPSKLIPPIR--SRCLPLFFRAPTDDELVDVLESIAEAEGV-----DYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CeEEEEeCChhhCchhhc--CCceEEEecCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHH
Confidence 77887775432 211111 22367899999999999888886543221 1225677888888888765443
No 54
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.47 E-value=1.7e-07 Score=92.35 Aligned_cols=50 Identities=28% Similarity=0.384 Sum_probs=33.5
Q ss_pred ccccchhcHHHHHHHHhc-CCCCcEEEEEEccCCCCHHHHHHHHhcccCcc
Q 048733 172 EVVGIESIKDKLIDLMLN-GRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLK 221 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 221 (887)
.|+||+++++++...+.. .....+++.|+|++|+|||+|.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999942 23456899999999999999999998853333
No 55
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=5.2e-06 Score=96.38 Aligned_cols=180 Identities=14% Similarity=0.146 Sum_probs=111.2
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCC-------------------CceeEEEE
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTH-------------------FSCRAWVT 231 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~ 231 (887)
.++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++...-... |..++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 478999999999999887653 2345689999999999999999985211111 11111111
Q ss_pred eCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHH-HhCCCceEEEEeccCCh--hH
Q 048733 232 VGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRD-HLKDKSYMVVLDDVWKI--DF 308 (887)
Q Consensus 232 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdv~~~--~~ 308 (887)
......+. .++ +++..+.. -..+++-++|||++... +.
T Consensus 95 Aas~~kVD-dIR--------------------------------------eLie~v~~~P~~gk~KViIIDEAh~LT~eA 135 (944)
T PRK14949 95 AASRTKVD-DTR--------------------------------------ELLDNVQYRPSRGRFKVYLIDEVHMLSRSS 135 (944)
T ss_pred cccccCHH-HHH--------------------------------------HHHHHHHhhhhcCCcEEEEEechHhcCHHH
Confidence 11000110 111 22222211 12456779999999765 57
Q ss_pred HHHHHHhcCCCCCCcEEEEEccc-hhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHH
Q 048733 309 WRDVEHALLDNKKCSRIIVTTRH-MNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILA 387 (887)
Q Consensus 309 ~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~ 387 (887)
++.++..+-......++|++|.+ ..+..... ++...+.+.+|+.++..+.+.+.+-... .....+....|++
T Consensus 136 qNALLKtLEEPP~~vrFILaTTe~~kLl~TIl--SRCq~f~fkpLs~eEI~~~L~~il~~Eg-----I~~edeAL~lIA~ 208 (944)
T PRK14949 136 FNALLKTLEEPPEHVKFLLATTDPQKLPVTVL--SRCLQFNLKSLTQDEIGTQLNHILTQEQ-----LPFEAEALTLLAK 208 (944)
T ss_pred HHHHHHHHhccCCCeEEEEECCCchhchHHHH--HhheEEeCCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHH
Confidence 88888887765556666665544 33332211 1227899999999999998888653221 1123567788999
Q ss_pred HhCCCchHHH
Q 048733 388 KCGGLPLAIV 397 (887)
Q Consensus 388 ~c~G~PLai~ 397 (887)
.++|.|--+.
T Consensus 209 ~S~Gd~R~AL 218 (944)
T PRK14949 209 AANGSMRDAL 218 (944)
T ss_pred HcCCCHHHHH
Confidence 9999885443
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.47 E-value=6.8e-09 Score=107.05 Aligned_cols=280 Identities=17% Similarity=0.102 Sum_probs=181.5
Q ss_pred CCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCC-CC--CCccccccccccceeecCCCceeeecCccccccc
Q 048733 569 IKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSP-IN--YLPEGVGNLFNLHLLNARNTKILDLAHTFVSELP 645 (887)
Q Consensus 569 ~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~--~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp 645 (887)
..++++..|.+.++..+++....++-..+++|+.|+|..|. ++ .+-.....+++|.||++++|. .++++.++.+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~--qi~~~gv~~~- 237 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP--QISGNGVQAL- 237 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc--hhhcCcchHH-
Confidence 46788888888888877666666777899999999999965 55 222344578999999999986 2233333333
Q ss_pred hhhhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHh-hccccccceeEEe-
Q 048733 646 EEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKEL-MMLRQLNMLSIRR- 723 (887)
Q Consensus 646 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l-~~l~~L~~L~l~~- 723 (887)
...+.+|+.+.+.||...... .+..+......+..+.-.+ .+.++......+ ..+..|+.|..++
T Consensus 238 --~rG~~~l~~~~~kGC~e~~le-----~l~~~~~~~~~i~~lnl~~------c~~lTD~~~~~i~~~c~~lq~l~~s~~ 304 (483)
T KOG4341|consen 238 --QRGCKELEKLSLKGCLELELE-----ALLKAAAYCLEILKLNLQH------CNQLTDEDLWLIACGCHALQVLCYSSC 304 (483)
T ss_pred --hccchhhhhhhhcccccccHH-----HHHHHhccChHhhccchhh------hccccchHHHHHhhhhhHhhhhcccCC
Confidence 335566777777777322211 1111111111111111111 233333333333 4678899999887
Q ss_pred ccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeeccC----CCChhhhcCCCcceeEEEeccc
Q 048733 724 QNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNMK----KLPDWILKLKNLIGSRLILSGL 799 (887)
Q Consensus 724 ~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~----~lp~~~~~l~~L~~L~L~~~~l 799 (887)
+......+.+...+.++|+.|.+..|...+...+..+...++.|+.+++.++.. .+-..-.+++.|+.|.|+.|..
T Consensus 305 t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~ 384 (483)
T KOG4341|consen 305 TDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCEL 384 (483)
T ss_pred CCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhh
Confidence 555555566666778899999999987666655666766667999999988642 2333334789999999999874
Q ss_pred -CCcCc-------CcCcccceeeeCcCCCceeEEE-cCCCccCccEEEEccCCCCCcc--ccccccCCCCCEEEEE
Q 048733 800 -TEDPI-------SWFPKLRKLVLLNFEAVKSVII-EKGAMPDIRELWIGPCPLLMEI--PIGIDHLRNLELLTFH 864 (887)
Q Consensus 800 -~~~~~-------~~~~~L~~L~l~~~~~l~~~~~-~~~~lp~L~~L~l~~c~~l~~l--p~~~~~l~~L~~L~l~ 864 (887)
+++.+ .+...|+.|.+.+++.+.+-.. ....+++|+.+++.+|.....- -..-.++|+++...+.
T Consensus 385 itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 385 ITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred hhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 33311 2567888999999987654322 2456889999999999877643 2344688888766543
No 57
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=5.2e-06 Score=93.44 Aligned_cols=196 Identities=16% Similarity=0.118 Sum_probs=112.6
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
+++||.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++...-.. |+.. ..+..-...+.|..
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~~--- 83 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVNE--- 83 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHhc---
Confidence 478999999999999998664 236778999999999999999887421111 1100 01111111111110
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH----hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH----LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSR 324 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 324 (887)
... .+-.. .. .......+++.+.+... ..++.-++|+|++... ...+.+...+.....+.+
T Consensus 84 -g~h--pDviE---------ID-AAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~ 150 (702)
T PRK14960 84 -GRF--IDLIE---------ID-AASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVK 150 (702)
T ss_pred -CCC--CceEE---------ec-ccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcE
Confidence 000 00000 00 00011223322222211 2356679999999765 467777777766556667
Q ss_pred EEEEccchh-HHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 048733 325 IIVTTRHMN-VAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIV 397 (887)
Q Consensus 325 iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 397 (887)
+|++|.+.. +.... .+....+++++++.++..+.+.+.+-..+ ..-..+....|++.++|.+-.+.
T Consensus 151 FILaTtd~~kIp~TI--lSRCq~feFkpLs~eEI~k~L~~Il~kEg-----I~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 151 FLFATTDPQKLPITV--ISRCLQFTLRPLAVDEITKHLGAILEKEQ-----IAADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred EEEEECChHhhhHHH--HHhhheeeccCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 777665532 22111 12237899999999999998887764322 12225667889999999774433
No 58
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=6e-06 Score=92.75 Aligned_cols=202 Identities=14% Similarity=0.101 Sum_probs=113.1
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
+++||-+..++.|.+++..+. -.+.+.++|..|+||||+|+.+.+...-...-.... + .+..+......+.|..
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~-~~~PCG~C~sC~~I~a--- 89 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I-TAQPCGQCRACTEIDA--- 89 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C-CCCCCcccHHHHHHHc---
Confidence 478999999999999998764 235678999999999999999887421100000000 0 0000111111111111
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh----CCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL----KDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSR 324 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 324 (887)
... .+... .. .......+++.+.+.... .++.-++|||+++.. ..++.++..+......+.
T Consensus 90 -G~h--pDviE---------Id-Aas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~ 156 (700)
T PRK12323 90 -GRF--VDYIE---------MD-AASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVK 156 (700)
T ss_pred -CCC--CcceE---------ec-ccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCce
Confidence 000 00000 00 001122333333332221 355669999999765 577888887765555555
Q ss_pred EEE-EccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 048733 325 IIV-TTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVA 398 (887)
Q Consensus 325 iiv-TtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 398 (887)
+|+ ||....+...+. +....+.+.+++.++..+.+.+.+...+ .....+..+.|++.++|.|.-...
T Consensus 157 FILaTtep~kLlpTIr--SRCq~f~f~~ls~eei~~~L~~Il~~Eg-----i~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 157 FILATTDPQKIPVTVL--SRCLQFNLKQMPPGHIVSHLDAILGEEG-----IAHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred EEEEeCChHhhhhHHH--HHHHhcccCCCChHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 555 554444432221 1227899999999999998887653221 112245668899999999864443
No 59
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.43 E-value=7.7e-07 Score=82.05 Aligned_cols=115 Identities=17% Similarity=0.289 Sum_probs=78.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCcc---CCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCC
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLK---THFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLP 270 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 270 (887)
.+++.|+|++|+|||++++.+.++.... ..-..++|+.+....+...+...|+.+++....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~---------------- 67 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK---------------- 67 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS----------------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc----------------
Confidence 4689999999999999999998852110 013346699988877999999999999987533
Q ss_pred CccccccCCHHHHHHHHHHHhCCCc-eEEEEeccCCh---hHHHHHHHhcCCCCCCcEEEEEccc
Q 048733 271 TPEEIHNMEETDLITTLRDHLKDKS-YMVVLDDVWKI---DFWRDVEHALLDNKKCSRIIVTTRH 331 (887)
Q Consensus 271 ~~~~~~~~~~~~l~~~l~~~L~~kr-~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~ 331 (887)
...+.+++.+.+.+.+...+ .+||+|+++.. +.++.+... .+ ..+.+||+..+.
T Consensus 68 -----~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l-~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 68 -----SRQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSL-LN-ESNIKVVLVGTP 125 (131)
T ss_dssp -----STS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHH-TC-SCBEEEEEEESS
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHH-Hh-CCCCeEEEEECh
Confidence 12356777888888886655 59999999655 234444333 33 556777776654
No 60
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=1.4e-05 Score=87.08 Aligned_cols=194 Identities=14% Similarity=0.096 Sum_probs=109.7
Q ss_pred CccccchhcHHHHHHHHhcCCC--------CcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRS--------KRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLL 242 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 242 (887)
+.++|-+..++.|.+++..+.. -.+.+.++|+.|+|||++|..+++...-...- + ..+..-..-
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~----~~Cg~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----E----PGCGECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----C----CCCCCCHHH
Confidence 3688999999999999887531 34678899999999999999987631111000 0 000000111
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-----CCCceEEEEeccCCh--hHHHHHHHh
Q 048733 243 RTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-----KDKSYMVVLDDVWKI--DFWRDVEHA 315 (887)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~ 315 (887)
+.+... . .++- ..- .+ +......+++.+.+ +.+ .+++-++|+|+++.. ...+.+...
T Consensus 77 ~~~~~~---~---hpD~---~~i-----~~-~~~~i~i~~iR~l~-~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 77 RTVLAG---T---HPDV---RVV-----AP-EGLSIGVDEVRELV-TIAARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred HHHhcC---C---CCCE---EEe-----cc-ccccCCHHHHHHHH-HHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 111100 0 0000 000 00 00112233332222 222 245558889999765 455667777
Q ss_pred cCCCCCCcEEEEEccch-hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCch
Q 048733 316 LLDNKKCSRIIVTTRHM-NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPL 394 (887)
Q Consensus 316 l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 394 (887)
+.....+..+|++|.+. .+..... +....+.+.+++.++..+.+.+... .. .+.+..+++.++|.|.
T Consensus 141 LEep~~~~~fIL~a~~~~~llpTIr--SRc~~i~f~~~~~~~i~~~L~~~~~-------~~---~~~a~~la~~s~G~~~ 208 (394)
T PRK07940 141 VEEPPPRTVWLLCAPSPEDVLPTIR--SRCRHVALRTPSVEAVAEVLVRRDG-------VD---PETARRAARASQGHIG 208 (394)
T ss_pred hhcCCCCCeEEEEECChHHChHHHH--hhCeEEECCCCCHHHHHHHHHHhcC-------CC---HHHHHHHHHHcCCCHH
Confidence 76555566666665553 3332222 2237999999999999988875421 11 3557789999999997
Q ss_pred HHHHHh
Q 048733 395 AIVAVG 400 (887)
Q Consensus 395 ai~~~~ 400 (887)
....++
T Consensus 209 ~A~~l~ 214 (394)
T PRK07940 209 RARRLA 214 (394)
T ss_pred HHHHHh
Confidence 655443
No 61
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=1.1e-05 Score=90.40 Aligned_cols=197 Identities=18% Similarity=0.117 Sum_probs=112.8
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCce-eEEEEeCCCCCHHHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSC-RAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
.+++|-+..+..|...+..+. -...+.++|+.|+||||+|+.+++...-...... ..+.. +........+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~----C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT----CEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC----CCCChHHHHHhcCC
Confidence 468999999999888777653 2356789999999999999999885211111000 00000 00001111111000
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH----hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCc
Q 048733 250 HRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH----LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCS 323 (887)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 323 (887)
..... + .. .......+++.+.+... +.+++-++|+|+++.. ..|+.+...+......+
T Consensus 96 h~Dv~----------e-----id-aas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~ 159 (507)
T PRK06645 96 HPDII----------E-----ID-AASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHI 159 (507)
T ss_pred CCcEE----------E-----ee-ccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCE
Confidence 00000 0 00 00112233333333221 2356779999999875 46888888887666666
Q ss_pred EEEE-EccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchH
Q 048733 324 RIIV-TTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLA 395 (887)
Q Consensus 324 ~iiv-TtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLa 395 (887)
.+|+ ||+...+...... ....+++.+++.++..+.+.+.+-..+. .-..+....|++.++|.+--
T Consensus 160 vfI~aTte~~kI~~tI~S--Rc~~~ef~~ls~~el~~~L~~i~~~egi-----~ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 160 IFIFATTEVQKIPATIIS--RCQRYDLRRLSFEEIFKLLEYITKQENL-----KTDIEALRIIAYKSEGSARD 225 (507)
T ss_pred EEEEEeCChHHhhHHHHh--cceEEEccCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHH
Confidence 6655 5555554433222 2268999999999999999988743321 11245667799999997743
No 62
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.36 E-value=5.5e-06 Score=96.83 Aligned_cols=171 Identities=22% Similarity=0.265 Sum_probs=95.5
Q ss_pred CccccchhcHH---HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHH
Q 048733 171 DEVVGIESIKD---KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (887)
Q Consensus 171 ~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (887)
++|+|.+..+. .+...+..+. ...+.|+|++|+||||||+.+++. ...+|.. ++... ....+ .
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~--~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~~---lna~~-~~i~d-i----- 93 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADR--VGSLILYGPPGVGKTTLARIIANH--TRAHFSS---LNAVL-AGVKD-L----- 93 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH--hcCccee---ehhhh-hhhHH-H-----
Confidence 46889888774 4555555443 456789999999999999999984 3334311 11100 00000 0
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh--CCCceEEEEeccCCh--hHHHHHHHhcCCCCCCc
Q 048733 248 EFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL--KDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCS 323 (887)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 323 (887)
.+........+ .+++.+|||||++.. ..++.+...+. .|+
T Consensus 94 ---------------------------------r~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~ 137 (725)
T PRK13341 94 ---------------------------------RAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGT 137 (725)
T ss_pred ---------------------------------HHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---Cce
Confidence 11111222222 246779999999654 45555554443 345
Q ss_pred EEEE--Eccchh--HHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCC--CCCCChHHHHHHHHHHHHhCCCc
Q 048733 324 RIIV--TTRHMN--VAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSS--GGCCPSELKELSQDILAKCGGLP 393 (887)
Q Consensus 324 ~iiv--TtR~~~--v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~--~~~~~~~~~~~~~~I~~~c~G~P 393 (887)
.++| ||.+.. +..... +....+.+++|+.++...++.+.+-.... ......-..+....|++.+.|.-
T Consensus 138 IiLI~aTTenp~~~l~~aL~--SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 138 ITLIGATTENPYFEVNKALV--SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred EEEEEecCCChHhhhhhHhh--ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 5555 344432 111111 12268999999999999999886531000 00011122456677888887754
No 63
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=8.2e-06 Score=91.83 Aligned_cols=193 Identities=18% Similarity=0.149 Sum_probs=113.4
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
++++|.+..++.|..++..+. -...+.++|++|+||||+|+.+++.....+.+....|.|.+. ..+.....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~~~h 84 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRRGAH 84 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhcCCC
Confidence 468999999999988888754 345678999999999999999988532222222233333211 01100000
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-----CCCceEEEEeccCCh--hHHHHHHHhcCCCCCCc
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-----KDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCS 323 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 323 (887)
. +... . . + ......+.+. .+++.+ .+++-++|+|+++.. +.++.+...+......+
T Consensus 85 ~------dv~e--l-----~-~--~~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t 147 (504)
T PRK14963 85 P------DVLE--I-----D-A--ASNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHV 147 (504)
T ss_pred C------ceEE--e-----c-c--cccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCE
Confidence 0 0000 0 0 0 0011122222 222222 245669999999765 46888888876655555
Q ss_pred EEEEEccc-hhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHH
Q 048733 324 RIIVTTRH-MNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAI 396 (887)
Q Consensus 324 ~iivTtR~-~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 396 (887)
.+|++|.. ..+...+. +....+++.+++.++..+.+.+.+-..+. .-..+....|++.++|.+--+
T Consensus 148 ~~Il~t~~~~kl~~~I~--SRc~~~~f~~ls~~el~~~L~~i~~~egi-----~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 148 IFILATTEPEKMPPTIL--SRTQHFRFRRLTEEEIAGKLRRLLEAEGR-----EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEEcCChhhCChHHh--cceEEEEecCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHH
Confidence 65555543 33322222 22378999999999999999887643321 113567788999999988543
No 64
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1.1e-05 Score=90.81 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=109.8
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccC-------------------CCceeEEEE
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKT-------------------HFSCRAWVT 231 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~ 231 (887)
.+++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+++...-.. .|...+++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 468999999999999887653 235577999999999999999987311100 111112221
Q ss_pred eCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH-hCCCceEEEEeccCCh--hH
Q 048733 232 VGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH-LKDKSYMVVLDDVWKI--DF 308 (887)
Q Consensus 232 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~~--~~ 308 (887)
......+. +..++.+.+... ..+++-++|+|+++.. +.
T Consensus 95 aas~~gvd---------------------------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a 135 (546)
T PRK14957 95 AASRTGVE---------------------------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQS 135 (546)
T ss_pred cccccCHH---------------------------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHH
Confidence 11111111 112222222211 2356679999999754 56
Q ss_pred HHHHHHhcCCCCCCcEEEE-EccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHH
Q 048733 309 WRDVEHALLDNKKCSRIIV-TTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILA 387 (887)
Q Consensus 309 ~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~ 387 (887)
++.++..+......+.+|+ ||....+.... .+....+++++++.++....+.+.+-..+ ..-..+....|++
T Consensus 136 ~naLLK~LEepp~~v~fIL~Ttd~~kil~tI--~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-----i~~e~~Al~~Ia~ 208 (546)
T PRK14957 136 FNALLKTLEEPPEYVKFILATTDYHKIPVTI--LSRCIQLHLKHISQADIKDQLKIILAKEN-----INSDEQSLEYIAY 208 (546)
T ss_pred HHHHHHHHhcCCCCceEEEEECChhhhhhhH--HHheeeEEeCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHH
Confidence 7888888876655666654 55443333221 12237899999999998888877543221 1122556678899
Q ss_pred HhCCCch-HHHHH
Q 048733 388 KCGGLPL-AIVAV 399 (887)
Q Consensus 388 ~c~G~PL-ai~~~ 399 (887)
.++|.+- |+..+
T Consensus 209 ~s~GdlR~alnlL 221 (546)
T PRK14957 209 HAKGSLRDALSLL 221 (546)
T ss_pred HcCCCHHHHHHHH
Confidence 9998663 44444
No 65
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.35 E-value=3.7e-06 Score=81.68 Aligned_cols=174 Identities=22% Similarity=0.205 Sum_probs=95.1
Q ss_pred CccccchhcHHHHHHHHhc---CCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLN---GRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (887)
++|||.++-++.+.-++.. ..+....+.++|++|+||||||.-+++. ....|. +.+.+.--..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~i~k~--------- 89 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPAIEKA--------- 89 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC--SC---------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchhhhhH---------
Confidence 5799999999887655543 2345678889999999999999999994 444442 2221110001
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--hHHHHHHHhcCC-------
Q 048733 248 EFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI--DFWRDVEHALLD------- 318 (887)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~------- 318 (887)
.++...+.. + +++-+|++|.+... .+-+.+..++-+
T Consensus 90 ---------------------------------~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiii 134 (233)
T PF05496_consen 90 ---------------------------------GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIII 134 (233)
T ss_dssp ---------------------------------HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEB
T ss_pred ---------------------------------HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEe
Confidence 122222222 2 24558888999654 333444444322
Q ss_pred -CCCC-----------cEEEEEccchhHHhhhccCCCcc-eeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHH
Q 048733 319 -NKKC-----------SRIIVTTRHMNVAKFCKLSSSVR-IHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDI 385 (887)
Q Consensus 319 -~~~g-----------s~iivTtR~~~v~~~~~~~~~~~-~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I 385 (887)
.+.+ +-|=-|||...+...... ... ..+++..+.+|-.++..+.+..-. .+-.++.+.+|
T Consensus 135 G~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~-----i~i~~~~~~~I 207 (233)
T PF05496_consen 135 GKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILN-----IEIDEDAAEEI 207 (233)
T ss_dssp SSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT------EE-HHHHHHH
T ss_pred ccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhC-----CCcCHHHHHHH
Confidence 1111 223347887555443322 113 447999999999999998764332 23346889999
Q ss_pred HHHhCCCchHHHHHh
Q 048733 386 LAKCGGLPLAIVAVG 400 (887)
Q Consensus 386 ~~~c~G~PLai~~~~ 400 (887)
+++|.|.|--+.-+-
T Consensus 208 a~rsrGtPRiAnrll 222 (233)
T PF05496_consen 208 ARRSRGTPRIANRLL 222 (233)
T ss_dssp HHCTTTSHHHHHHHH
T ss_pred HHhcCCChHHHHHHH
Confidence 999999996544433
No 66
>PLN03025 replication factor C subunit; Provisional
Probab=98.35 E-value=8.5e-06 Score=87.46 Aligned_cols=179 Identities=16% Similarity=0.158 Sum_probs=103.4
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCc-eeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFS-CRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
.+++|.++.++.|..++..+. .+.+.++|++|+||||+|+.+++... ...|. .++-+..+..... +.++++++.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~-~~vr~~i~~~ 88 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGI-DVVRNKIKMF 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccH-HHHHHHHHHH
Confidence 467899888888888776543 34577999999999999999988421 11221 1111222222221 1223332222
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh--HHHHHHHhcCCCCCCcEEEE
Q 048733 250 HRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID--FWRDVEHALLDNKKCSRIIV 327 (887)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv 327 (887)
..... ..-.++.-++|||+++... ....+...+......+++|+
T Consensus 89 ~~~~~----------------------------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il 134 (319)
T PLN03025 89 AQKKV----------------------------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFAL 134 (319)
T ss_pred Hhccc----------------------------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEE
Confidence 11000 0001346699999997663 44455555544445667777
Q ss_pred Eccch-hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCch
Q 048733 328 TTRHM-NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPL 394 (887)
Q Consensus 328 TtR~~-~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 394 (887)
++... .+..... +....+++++++.++....+.+.+-..+. . -..+....|++.++|..-
T Consensus 135 ~~n~~~~i~~~L~--SRc~~i~f~~l~~~~l~~~L~~i~~~egi--~---i~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 135 ACNTSSKIIEPIQ--SRCAIVRFSRLSDQEILGRLMKVVEAEKV--P---YVPEGLEAIIFTADGDMR 195 (319)
T ss_pred EeCCccccchhHH--HhhhcccCCCCCHHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHcCCCHH
Confidence 66442 2211111 11268899999999999888887643221 1 124567888899888653
No 67
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=1.9e-05 Score=85.23 Aligned_cols=209 Identities=14% Similarity=0.082 Sum_probs=116.6
Q ss_pred cCccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEE---EEeCCCCCHHHHHHHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAW---VTVGKEYNKNDLLRTII 246 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w---v~v~~~~~~~~~~~~i~ 246 (887)
-..++|-+..++.|.+.+..+. -...+.++|+.|+||+|+|..+++..--......... .............+.|.
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~ 96 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA 96 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH
Confidence 3578999999999999988764 2346889999999999999888774211110000000 00000000011112221
Q ss_pred HHHhhccCCCCCCC--CCCCCCCCCCCccccccCCHHHHHHHHHHHhC-----CCceEEEEeccCCh--hHHHHHHHhcC
Q 048733 247 KEFHRLSKHGRDGP--DRHAEGPLLPTPEEIHNMEETDLITTLRDHLK-----DKSYMVVLDDVWKI--DFWRDVEHALL 317 (887)
Q Consensus 247 ~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-----~kr~LlVlDdv~~~--~~~~~l~~~l~ 317 (887)
. .. .++-. ....++... .....+..+++. .+.+.+. +.+-++|+||++.. .....+...+.
T Consensus 97 ~----~~--HPDl~~i~~~~~~~~~---~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE 166 (365)
T PRK07471 97 A----GA--HGGLLTLERSWNEKGK---RLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE 166 (365)
T ss_pred c----cC--CCCeEEEecccccccc---cccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh
Confidence 1 10 11100 000000000 001223455533 3344442 45679999999654 46777777776
Q ss_pred CCCCCcEEEEEccchh-HHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHH
Q 048733 318 DNKKCSRIIVTTRHMN-VAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAI 396 (887)
Q Consensus 318 ~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 396 (887)
....++.+|++|.+.. +... ..+....+.+.+++.++..+++.+.... .. .+....+++.++|.|..+
T Consensus 167 epp~~~~~IL~t~~~~~llpt--i~SRc~~i~l~~l~~~~i~~~L~~~~~~------~~---~~~~~~l~~~s~Gsp~~A 235 (365)
T PRK07471 167 EPPARSLFLLVSHAPARLLPT--IRSRCRKLRLRPLAPEDVIDALAAAGPD------LP---DDPRAALAALAEGSVGRA 235 (365)
T ss_pred cCCCCeEEEEEECCchhchHH--hhccceEEECCCCCHHHHHHHHHHhccc------CC---HHHHHHHHHHcCCCHHHH
Confidence 6555666777666653 3222 1233479999999999999999886411 11 122267899999999876
Q ss_pred HHHh
Q 048733 397 VAVG 400 (887)
Q Consensus 397 ~~~~ 400 (887)
..+.
T Consensus 236 l~ll 239 (365)
T PRK07471 236 LRLA 239 (365)
T ss_pred HHHh
Confidence 5543
No 68
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.2e-05 Score=88.08 Aligned_cols=193 Identities=15% Similarity=0.068 Sum_probs=109.7
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
++++|.+..+..|..++..+. -...+.++|+.|+||||+|+.+++...-....... .+....+ ...+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~---pCg~C~s----C~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNE---PCNECTS----CLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcc---ccCCCcH----HHHHHccCC
Confidence 468999999999999888764 23467899999999999999998842111100000 0000011 111111110
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHH---HHHHHHHHH-hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEET---DLITTLRDH-LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSR 324 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 324 (887)
.... + .. .......+ ++.+.+... ..++.-++|+|+++.. +.++.++..+........
T Consensus 90 ~dvi--------------E-Id-aas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~vi 153 (484)
T PRK14956 90 SDVL--------------E-ID-AASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIV 153 (484)
T ss_pred ccce--------------e-ec-hhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceE
Confidence 0000 0 00 00011122 222222221 2356679999999765 568888877765444555
Q ss_pred EEE-EccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCch
Q 048733 325 IIV-TTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPL 394 (887)
Q Consensus 325 iiv-TtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 394 (887)
+|+ ||....+..... +....+.+.+++.++..+.+.+.+-..+ ..-..+....|++.++|.+-
T Consensus 154 FILaTte~~kI~~TI~--SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-----i~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 154 FILATTEFHKIPETIL--SRCQDFIFKKVPLSVLQDYSEKLCKIEN-----VQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred EEeecCChhhccHHHH--hhhheeeecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCChHH
Confidence 554 444444332221 1227899999999999888887753321 11235677889999999874
No 69
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=1.4e-05 Score=91.06 Aligned_cols=196 Identities=15% Similarity=0.095 Sum_probs=109.4
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
+++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+.+...-..... + ..+......+.|..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~----~pCg~C~sCr~i~~--- 84 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---G----EPCGVCQSCTQIDA--- 84 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---C----CCCcccHHHHHHhc---
Confidence 478999999999999988753 235678999999999999999887411111100 0 00000011111100
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH----hCCCceEEEEeccCChh--HHHHHHHhcCCCCCCcE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH----LKDKSYMVVLDDVWKID--FWRDVEHALLDNKKCSR 324 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ 324 (887)
... .+.. + . ........+.+.+.+... ..+++-++|||++.... ....++..+......++
T Consensus 85 -g~~--~Dvl--------E-i-daAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 85 -GRY--VDLL--------E-I-DAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred -cCc--cceE--------E-E-eccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 000 0000 0 0 000111222222222211 13566799999997653 46667777765444566
Q ss_pred EEEEccch-hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 048733 325 IIVTTRHM-NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIV 397 (887)
Q Consensus 325 iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 397 (887)
+|++|.+. .+..... +....+.+.+++.++....+.+.+-..+ ..-..+....|++.++|.+--+.
T Consensus 152 fILaTtd~~kL~~TIr--SRC~~f~f~~Ls~eeI~~~L~~Il~kEg-----i~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 152 FILATTDPHKVPVTVL--SRCLQFVLRNMTAQQVADHLAHVLDSEK-----IAYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred EEEEeCCccccchHHH--HHHhhhhcCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHHhCCCHHHHH
Confidence 66666443 2221111 1226788999999999998887764322 11235677889999999885433
No 70
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.31 E-value=8.7e-08 Score=96.96 Aligned_cols=247 Identities=19% Similarity=0.164 Sum_probs=130.5
Q ss_pred cCCCCceeEEEeecCCCCC--ccccccccCCCceeEEEEecCCCC----CCCcccc-------ccccccceeecCCCcee
Q 048733 568 SIKDSKVRSVILFNVDKLP--DSFVKSCIANFKLMKVLDLEDSPI----NYLPEGV-------GNLFNLHLLNARNTKIL 634 (887)
Q Consensus 568 ~~~~~~lrsL~~~~~~~~~--~~~~~~~~~~~~~Lr~L~L~~~~l----~~lp~~i-------~~L~~L~~L~L~~~~~L 634 (887)
......+..+.++++.... ...+...+.+.+.||+-++++-.. .++|+.+ -..++|++|+|+.|-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA-- 103 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA-- 103 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc--
Confidence 3445566667777665532 233445556666777777766421 1334322 244466666666542
Q ss_pred eecCccccccchhhhcccccCeeeecccccccccccchhhhhhccCC-ccccccccccccccccCceecchHHHHHhhcc
Q 048733 635 DLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRG-FGSLRGLQSLRGLLALPTIEADSQVLKELMML 713 (887)
Q Consensus 635 dl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~-i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l 713 (887)
+.-..+..+-.-|.++..|+||+|.+|. ....-.+ ++ ..|+.|. ......+-
T Consensus 104 -~G~~g~~~l~~ll~s~~~L~eL~L~N~G-----------lg~~ag~~l~--~al~~l~-------------~~kk~~~~ 156 (382)
T KOG1909|consen 104 -FGPKGIRGLEELLSSCTDLEELYLNNCG-----------LGPEAGGRLG--RALFELA-------------VNKKAASK 156 (382)
T ss_pred -cCccchHHHHHHHHhccCHHHHhhhcCC-----------CChhHHHHHH--HHHHHHH-------------HHhccCCC
Confidence 1111222333445566667777776661 0000000 00 0111111 11223445
Q ss_pred ccccceeEEecc---CChhHHHHHHhcccCCcEEEEeecCCcccc---ccCcccccccccceeEEeecc----C--CCCh
Q 048733 714 RQLNMLSIRRQN---GNGRDLCALIANLENVETLGVLMKSKEEIL---DLQSLSSPPQHLQYLSLRGNM----K--KLPD 781 (887)
Q Consensus 714 ~~L~~L~l~~~~---~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~---~l~~l~~~~~~L~~L~L~~~~----~--~lp~ 781 (887)
++|+.+....|. .....+...+...+.|+.+.+..|...... ....+..++ +|+.|+|..|. + .+..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~-~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP-HLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC-cceeeecccchhhhHHHHHHHH
Confidence 667777666532 233445566677778888888876543211 112333333 88888887764 1 2344
Q ss_pred hhhcCCCcceeEEEecccCCcCc--------CcCcccceeeeCcCCCcee----EEEcCCCccCccEEEEccCCC
Q 048733 782 WILKLKNLIGSRLILSGLTEDPI--------SWFPKLRKLVLLNFEAVKS----VIIEKGAMPDIRELWIGPCPL 844 (887)
Q Consensus 782 ~~~~l~~L~~L~L~~~~l~~~~~--------~~~~~L~~L~l~~~~~l~~----~~~~~~~lp~L~~L~l~~c~~ 844 (887)
.+..+++|+.|++++|.+..... ..+|+|+.|.+.+|....+ +.......|.|+.|+|++|..
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 45566788888888887765322 1577888888777653221 111233478888888888873
No 71
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.2e-05 Score=83.34 Aligned_cols=198 Identities=15% Similarity=0.201 Sum_probs=124.5
Q ss_pred CccccchhcHHHHHHHHhcC--CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCc--eeEEEEeCCCCCHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNG--RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFS--CRAWVTVGKEYNKNDLLRTII 246 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~i~ 246 (887)
..+.+|+++++++...|... .....-+.|+|.+|+|||+.++.+.+. +..... ..++|++....+...++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 34889999999999888763 222334889999999999999999985 332221 168889889999999999999
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhC--CCceEEEEeccCChhHH--HHHHHhcCCCCC-
Q 048733 247 KEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLK--DKSYMVVLDDVWKIDFW--RDVEHALLDNKK- 321 (887)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~~~--~~l~~~l~~~~~- 321 (887)
.+++... ...+...+..+.+.+.+. ++.+++|||+++....- +.+...+.....
T Consensus 95 ~~~~~~p---------------------~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~ 153 (366)
T COG1474 95 NKLGKVP---------------------LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN 153 (366)
T ss_pred HHcCCCC---------------------CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc
Confidence 9987321 123455677777777774 47899999999765221 333333332222
Q ss_pred CcEE--EEEccchhHHhhhc----cCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCC
Q 048733 322 CSRI--IVTTRHMNVAKFCK----LSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGG 391 (887)
Q Consensus 322 gs~i--ivTtR~~~v~~~~~----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G 391 (887)
.++| |..+-+........ ..-....+..+|-+.+|-.+.+..++-..-.+....+..-+.+..++..-+|
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc
Confidence 3444 22333332222211 1111144788899999999999987743332233344444444444444444
No 72
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.30 E-value=2e-05 Score=85.13 Aligned_cols=178 Identities=19% Similarity=0.183 Sum_probs=105.4
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEe--CCCCCHHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV--GKEYNKNDLLRTIIKE 248 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~~~~i~~~ 248 (887)
++++|+++.++.+..++..+. .+.+.|+|++|+||||+|+.+++... ...+.. .++.+ +..... +...+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~-~~i~~~~~~~~~~-~~~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARELY-GEDWRE-NFLELNASDERGI-DVIRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHc-CCcccc-ceEEeccccccch-HHHHHHHHH
Confidence 468999999999999987643 34578999999999999999988521 111211 12222 221111 112222222
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEE
Q 048733 249 FHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRII 326 (887)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ii 326 (887)
+..... .....+-++++|+++.. +....+...+......+.+|
T Consensus 92 ~~~~~~-----------------------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lI 136 (319)
T PRK00440 92 FARTAP-----------------------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFI 136 (319)
T ss_pred HHhcCC-----------------------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEE
Confidence 211000 00123568999999654 34556666665555556777
Q ss_pred EEccch-hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchH
Q 048733 327 VTTRHM-NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLA 395 (887)
Q Consensus 327 vTtR~~-~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLa 395 (887)
+++... ....... .....+++.+++.++....+.+.+...+. .-.++....+++.++|.+--
T Consensus 137 l~~~~~~~l~~~l~--sr~~~~~~~~l~~~ei~~~l~~~~~~~~~-----~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 137 LSCNYSSKIIDPIQ--SRCAVFRFSPLKKEAVAERLRYIAENEGI-----EITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred EEeCCccccchhHH--HHhheeeeCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHH
Confidence 766432 1111111 11257899999999998888887643321 12256778889999998754
No 73
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=1.9e-05 Score=90.51 Aligned_cols=197 Identities=16% Similarity=0.124 Sum_probs=112.6
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
.++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++...-...+ ....+..-...+.| .
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i----~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREI----E 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHH----H
Confidence 478999999999999888754 23457899999999999999998742111100 00111111122222 1
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHH---HHHHHH-hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLI---TTLRDH-LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSR 324 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 324 (887)
.... .+... .. .......+++. +.+... ..+++-++|||+++.. +..+.++..+-......+
T Consensus 84 ~g~~--~D~ie---------id-aas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~ 151 (647)
T PRK07994 84 QGRF--VDLIE---------ID-AASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 (647)
T ss_pred cCCC--CCcee---------ec-ccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeE
Confidence 1100 00000 00 00011222222 222111 2456679999999765 577888887776555666
Q ss_pred EEEEccc-hhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 048733 325 IIVTTRH-MNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVA 398 (887)
Q Consensus 325 iivTtR~-~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 398 (887)
+|++|.+ ..+..... +....+.+.+++.++..+.+.+.+-..+ .....+....|++.++|.+--+..
T Consensus 152 FIL~Tt~~~kLl~TI~--SRC~~~~f~~Ls~~ei~~~L~~il~~e~-----i~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 152 FLLATTDPQKLPVTIL--SRCLQFHLKALDVEQIRQQLEHILQAEQ-----IPFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred EEEecCCccccchHHH--hhheEeeCCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 6555544 33332211 2237999999999999998887653221 112246667899999998864443
No 74
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.28 E-value=6.2e-06 Score=77.71 Aligned_cols=57 Identities=23% Similarity=0.169 Sum_probs=41.4
Q ss_pred ccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCC
Q 048733 174 VGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK 234 (887)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 234 (887)
+|++..++.+...+.... .+.+.|+|++|+|||++++.+++... ..-..++++....
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~ 57 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASD 57 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhh
Confidence 478888888888876632 45788999999999999999998532 2223355665543
No 75
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.27 E-value=1.9e-06 Score=87.47 Aligned_cols=53 Identities=23% Similarity=0.134 Sum_probs=44.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCC--CCHHHHHHHHHH
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE--YNKNDLLRTIIK 247 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~i~~ 247 (887)
...++|+|++|+|||||++.++++.... +|+.++|+++... +++.++++.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~ 70 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKG 70 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhcc
Confidence 4578899999999999999999975444 8999999997776 788999888843
No 76
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=5.1e-05 Score=81.53 Aligned_cols=210 Identities=16% Similarity=0.149 Sum_probs=117.8
Q ss_pred ccCccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccC--CCceeEEEEeCCCCCHHHHHHHHH
Q 048733 169 EDDEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKT--HFSCRAWVTVGKEYNKNDLLRTII 246 (887)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~v~~~~~~~~~~~~i~ 246 (887)
....++|-++..+.+...+..+. -...+.|+|+.|+||||+|..+++...-.. .+... ............+.|.
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIA 96 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHH
Confidence 34578999999999999998764 234688999999999999998887521110 01111 0011111112233332
Q ss_pred HHHhhccCCCCCCCCCCCCCCC-CCCccccccCCHHHHHHHHHHHh-----CCCceEEEEeccCCh--hHHHHHHHhcCC
Q 048733 247 KEFHRLSKHGRDGPDRHAEGPL-LPTPEEIHNMEETDLITTLRDHL-----KDKSYMVVLDDVWKI--DFWRDVEHALLD 318 (887)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~ 318 (887)
..-.. +-. ....+. .+.......+..+++. .+.+++ .+++-++|+|+++.. ...+.+...+..
T Consensus 97 ~~~hP------dl~--~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE 167 (351)
T PRK09112 97 QGAHP------NLL--HITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE 167 (351)
T ss_pred cCCCC------CEE--EeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc
Confidence 21110 000 000000 0000001223445543 344444 346679999999765 456777777765
Q ss_pred CCCCcEE-EEEccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 048733 319 NKKCSRI-IVTTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIV 397 (887)
Q Consensus 319 ~~~gs~i-ivTtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 397 (887)
...+..+ ++|++...+.... .+....+.+.+++.++..+++.+..... . ...+....|++.++|.|..+.
T Consensus 168 pp~~~~fiLit~~~~~llptI--rSRc~~i~l~pl~~~~~~~~L~~~~~~~------~-~~~~~~~~i~~~s~G~pr~Al 238 (351)
T PRK09112 168 PPARALFILISHSSGRLLPTI--RSRCQPISLKPLDDDELKKALSHLGSSQ------G-SDGEITEALLQRSKGSVRKAL 238 (351)
T ss_pred CCCCceEEEEECChhhccHHH--HhhccEEEecCCCHHHHHHHHHHhhccc------C-CCHHHHHHHHHHcCCCHHHHH
Confidence 4444554 4454443333222 2233799999999999999998743111 1 114456789999999998665
Q ss_pred HHh
Q 048733 398 AVG 400 (887)
Q Consensus 398 ~~~ 400 (887)
.+.
T Consensus 239 ~ll 241 (351)
T PRK09112 239 LLL 241 (351)
T ss_pred HHH
Confidence 444
No 77
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=2.9e-05 Score=88.81 Aligned_cols=199 Identities=14% Similarity=0.129 Sum_probs=111.1
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCC--ceeEEEEeCCCCCHHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF--SCRAWVTVGKEYNKNDLLRTIIKE 248 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~i~~~ 248 (887)
+++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++...-.+.. ...- ...+......+.|..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~i~~- 89 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRDIDS- 89 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHHHHc-
Confidence 468999998999999888764 23567899999999999999986631111000 0000 001111122222210
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH----hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCC
Q 048733 249 FHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH----LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKC 322 (887)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~g 322 (887)
... .+... .. .......+++.+.+... ..++.-++|||+++.. +.++.++..+......
T Consensus 90 ---g~h--~D~~e---------ld-aas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~ 154 (618)
T PRK14951 90 ---GRF--VDYTE---------LD-AASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEY 154 (618)
T ss_pred ---CCC--Cceee---------cC-cccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCC
Confidence 000 00000 00 00112233333322221 1234558999999865 4677788777665556
Q ss_pred cEEEEEc-cchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 048733 323 SRIIVTT-RHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIV 397 (887)
Q Consensus 323 s~iivTt-R~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 397 (887)
..+|++| ....+..... +....+++++++.++..+.+.+.+...+. .-..+....|++.++|.+--+.
T Consensus 155 ~~fIL~Ttd~~kil~TIl--SRc~~~~f~~Ls~eei~~~L~~i~~~egi-----~ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 155 LKFVLATTDPQKVPVTVL--SRCLQFNLRPMAPETVLEHLTQVLAAENV-----PAEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred eEEEEEECCchhhhHHHH--HhceeeecCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHH
Confidence 6666554 4333332211 22278999999999999988877643221 1224667888999998775443
No 78
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2.9e-05 Score=86.73 Aligned_cols=201 Identities=18% Similarity=0.175 Sum_probs=108.6
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
++++|.+.....|...+..+. -.+.+.++|++|+||||+|+.+++.......-. ...+........+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~-------~~pc~~c~~c~~i~~--- 82 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKG-------VEPCNECRACRSIDE--- 82 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCCCcccHHHHHHhc---
Confidence 468999988888888777654 235678999999999999999987421111000 000000000000100
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH-----hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCc
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH-----LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCS 323 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 323 (887)
... .+.. ... .......+++. .+.+. ..+++-++|+|+++.. +..+.+...+.......
T Consensus 83 -g~~--~dv~---------el~-aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~v 148 (472)
T PRK14962 83 -GTF--MDVI---------ELD-AASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHV 148 (472)
T ss_pred -CCC--CccE---------EEe-CcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcE
Confidence 000 0000 000 00001112221 22222 2245669999999754 45666777766544445
Q ss_pred EEEEEccc-hhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCC-CchHHHHHhh
Q 048733 324 RIIVTTRH-MNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGG-LPLAIVAVGG 401 (887)
Q Consensus 324 ~iivTtR~-~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~~~~~ 401 (887)
.+|++|.+ ..+..... +....+++.+++.++....+.+.+...+ ..-..++...|++.++| .+.|+..+-.
T Consensus 149 v~Ilattn~~kl~~~L~--SR~~vv~f~~l~~~el~~~L~~i~~~eg-----i~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 149 VFVLATTNLEKVPPTII--SRCQVIEFRNISDELIIKRLQEVAEAEG-----IEIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEEEeCChHhhhHHHh--cCcEEEEECCccHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55544433 33333222 2337899999999999888888764321 11224667788888865 5666666654
Q ss_pred hh
Q 048733 402 LL 403 (887)
Q Consensus 402 ~l 403 (887)
+.
T Consensus 222 l~ 223 (472)
T PRK14962 222 VW 223 (472)
T ss_pred HH
Confidence 33
No 79
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2.7e-05 Score=86.51 Aligned_cols=179 Identities=16% Similarity=0.179 Sum_probs=109.7
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCcc-------------------CCCceeEEEE
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLK-------------------THFSCRAWVT 231 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~ 231 (887)
.++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++...-. +.+.-++.++
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 478999999998888887654 23478899999999999999887621000 0111122232
Q ss_pred eCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--hHH
Q 048733 232 VGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI--DFW 309 (887)
Q Consensus 232 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~ 309 (887)
.+....+.+ .+++++.+... -..++.-++|+|++... +..
T Consensus 92 aas~~~vdd-IR~Iie~~~~~-------------------------------------P~~~~~KVvIIDEah~Ls~~A~ 133 (491)
T PRK14964 92 AASNTSVDD-IKVILENSCYL-------------------------------------PISSKFKVYIIDEVHMLSNSAF 133 (491)
T ss_pred cccCCCHHH-HHHHHHHHHhc-------------------------------------cccCCceEEEEeChHhCCHHHH
Confidence 222222211 11222211100 01245668999999755 467
Q ss_pred HHHHHhcCCCCCCcEEEEEc-cchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHH
Q 048733 310 RDVEHALLDNKKCSRIIVTT-RHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAK 388 (887)
Q Consensus 310 ~~l~~~l~~~~~gs~iivTt-R~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~ 388 (887)
+.+...+......+.+|++| ....+..... +....+++.+++.++..+.+.+.+...+ ..-..+....|++.
T Consensus 134 NaLLK~LEePp~~v~fIlatte~~Kl~~tI~--SRc~~~~f~~l~~~el~~~L~~ia~~Eg-----i~i~~eAL~lIa~~ 206 (491)
T PRK14964 134 NALLKTLEEPAPHVKFILATTEVKKIPVTII--SRCQRFDLQKIPTDKLVEHLVDIAKKEN-----IEHDEESLKLIAEN 206 (491)
T ss_pred HHHHHHHhCCCCCeEEEEEeCChHHHHHHHH--HhheeeecccccHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHH
Confidence 78888887666667666655 4344433222 1227899999999999999888764332 11225667789999
Q ss_pred hCCCchH
Q 048733 389 CGGLPLA 395 (887)
Q Consensus 389 c~G~PLa 395 (887)
++|.+-.
T Consensus 207 s~GslR~ 213 (491)
T PRK14964 207 SSGSMRN 213 (491)
T ss_pred cCCCHHH
Confidence 9987753
No 80
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.24 E-value=5.4e-05 Score=74.56 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=63.2
Q ss_pred CCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEEEccch-hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCC
Q 048733 293 DKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIVTTRHM-NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPS 369 (887)
Q Consensus 293 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 369 (887)
+.+-++|+||++.. +.++.+...+......+.+|++|++. .+..... +....+++.+++.++..+.+.+. + -
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~--sr~~~~~~~~~~~~~~~~~l~~~--g-i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR--SRCQVLPFPPLSEEALLQWLIRQ--G-I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH--hhcEEeeCCCCCHHHHHHHHHHc--C-C
Confidence 45668999999654 46778888887655566777766653 2222221 22378999999999999988886 1 1
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCchH
Q 048733 370 SGGCCPSELKELSQDILAKCGGLPLA 395 (887)
Q Consensus 370 ~~~~~~~~~~~~~~~I~~~c~G~PLa 395 (887)
. ++.+..|++.++|.|..
T Consensus 170 -----~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -----S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred -----C---HHHHHHHHHHcCCCccc
Confidence 1 46688999999998853
No 81
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.24 E-value=5.5e-08 Score=104.14 Aligned_cols=157 Identities=25% Similarity=0.303 Sum_probs=85.8
Q ss_pred CCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchhh
Q 048733 595 ANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEA 674 (887)
Q Consensus 595 ~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 674 (887)
..|-.|..|.|+.|.+..+|..+++|..|.||+|+.| .+..+|..++.|+ |+.|.+++| .
T Consensus 95 ~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N--------qlS~lp~~lC~lp-Lkvli~sNN-----------k 154 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN--------QLSHLPDGLCDLP-LKVLIVSNN-----------K 154 (722)
T ss_pred HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc--------hhhcCChhhhcCc-ceeEEEecC-----------c
Confidence 3344455555555555555555555555555555443 3556666666554 566666655 4
Q ss_pred hhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccc
Q 048733 675 AAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEI 754 (887)
Q Consensus 675 ~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 754 (887)
+..+|++|+.+..|..|+ .+.+ ....+++-+..+.+|+.|.+..|.....
T Consensus 155 l~~lp~~ig~~~tl~~ld----------------------------~s~n--ei~slpsql~~l~slr~l~vrRn~l~~l 204 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLD----------------------------VSKN--EIQSLPSQLGYLTSLRDLNVRRNHLEDL 204 (722)
T ss_pred cccCCcccccchhHHHhh----------------------------hhhh--hhhhchHHhhhHHHHHHHHHhhhhhhhC
Confidence 555666666545444444 3322 1222344444444444444444432221
Q ss_pred cccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcCcC
Q 048733 755 LDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDPIS 805 (887)
Q Consensus 755 ~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~~ 805 (887)
. +.+... .|..|++++|. ..+|..|.+|..|++|.|.+|.+...|..
T Consensus 205 p--~El~~L--pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 205 P--EELCSL--PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred C--HHHhCC--ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHH
Confidence 1 122222 47777777764 57888888888888888888888776543
No 82
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=3.2e-05 Score=87.33 Aligned_cols=195 Identities=15% Similarity=0.089 Sum_probs=107.3
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
+++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++...-...+.. ..+..-...+.|..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~-------~pCg~C~~C~~i~~--- 84 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA-------NPCNDCENCREIDE--- 84 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc-------ccCCCCHHHHHHhc---
Confidence 468999999999999998754 2346789999999999999998874211111100 00011111111110
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH----hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH----LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSR 324 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 324 (887)
... ++-. + .. .......+++.+.+... ..++.-++|+|+++.. +..+.+...+......++
T Consensus 85 -g~~--~d~~--------e-id-aas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 85 -GRF--PDLF--------E-VD-AASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred -CCC--ceEE--------E-Ec-ccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 000 0000 0 00 00011222222211111 1345668999999765 567778777776555676
Q ss_pred EEEEccc-hhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHH
Q 048733 325 IIVTTRH-MNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAI 396 (887)
Q Consensus 325 iivTtR~-~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 396 (887)
+|++|.+ ..+..... +....+++++++.++....+.+.+-..+. .-..+....|++.++|.+--+
T Consensus 152 fIlattd~~kl~~tI~--SRc~~~~f~~l~~~~i~~~l~~il~~egi-----~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 152 FILATTDHHKLPVTVL--SRCLQFHLAQLPPLQIAAHCQHLLKEENV-----EFENAALDLLARAANGSVRDA 217 (509)
T ss_pred EEEEECChHhchHHHH--HHhhhhhcCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCcHHHH
Confidence 7665543 33322211 12267899999999888777666532211 112455677888999877543
No 83
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.23 E-value=1.3e-06 Score=91.35 Aligned_cols=293 Identities=18% Similarity=0.150 Sum_probs=178.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCC-HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYN-KNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTP 272 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 272 (887)
.+.+.++|.|||||||++-.+.. +...|..-+|+..-.+++ ...+.-.+...++....
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~------------------ 72 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ------------------ 72 (414)
T ss_pred hheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc------------------
Confidence 57899999999999999998887 556676555554444444 43333333333433211
Q ss_pred cccccCCHHHHHHHHHHHhCCCceEEEEeccCCh-hHHHHHHHhcCCCCCCcEEEEEccchhHHhhhccCCCcceeecCC
Q 048733 273 EEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI-DFWRDVEHALLDNKKCSRIIVTTRHMNVAKFCKLSSSVRIHELET 351 (887)
Q Consensus 273 ~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~~~~l~~ 351 (887)
+-+.....+.....++|.++|+||.... +.-..+.-.+..+...-.|+.|+|....... .....+++
T Consensus 73 ------~g~~~~~~~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~g------e~~~~~~~ 140 (414)
T COG3903 73 ------PGDSAVDTLVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAG------EVHRRVPS 140 (414)
T ss_pred ------cchHHHHHHHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccc------cccccCCc
Confidence 1133455667777889999999998654 2223333345555556678888887543321 15667888
Q ss_pred CChh-hHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHhhhhcCCCCCHHHHHHHHHHhccccCCC---
Q 048733 352 LPPD-EAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSTKNRIVSEWKKLFDRLGSMLGSD--- 427 (887)
Q Consensus 352 L~~~-e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~~w~~~~~~~~~~~~~~--- 427 (887)
|+.. ++.++|...+.....+-...........+|.++..|.|++|...++..+.-.. .+-...++.-...+.+.
T Consensus 141 L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~--~~i~~~L~drf~ll~~~~r~ 218 (414)
T COG3903 141 LSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSP--DEIAAGLRDRFRLLTGGARL 218 (414)
T ss_pred cccCCchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCH--HHHHHHHhhHHHHHhccccc
Confidence 8765 78889887764333221222334567889999999999999999988876542 22222222111111111
Q ss_pred --CCccchHHHHhhcccCCChhhHHHHhhhcccCCCcccChhHHHHHHHHcCccccCCCCCHHHHHHHHHHHHhhcCCee
Q 048733 428 --PHLKDCNRVLSEGYYDLPHHLKSCLLYFGLFPESCKINRGRLIRLWIAEGLVQYSKRFTSEQVAAEYLDELIDRSLVQ 505 (887)
Q Consensus 428 --~~~~~i~~~l~~sy~~Lp~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~ 505 (887)
.-.....+.+..||.-|..-.+-.|--++.|...+... ...|.+-|-... .+.-....-+..+++++++.
T Consensus 219 a~~~~qtl~asl~ws~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~ 290 (414)
T COG3903 219 AVLRQQTLRASLDWSYALLTGWERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVV 290 (414)
T ss_pred chhHHHhccchhhhhhHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchh
Confidence 11235677899999999999999999999998776543 334444333210 01122344477888888887
Q ss_pred eeecCCCCceeEEEeCHHHHHHHHHhh
Q 048733 506 VSNREIPGRAIICHVHDLMHEIIIRKT 532 (887)
Q Consensus 506 ~~~~~~~~~~~~~~~Hdlv~~~~~~~~ 532 (887)
..... +. ..|+.-+-++.|+..+-
T Consensus 291 a~~~~--~~-a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 291 ALDLL--GR-ARYRLLETGRRYALAEL 314 (414)
T ss_pred hhhhh--hH-HHHHHHHHHHHHHHHHH
Confidence 65432 11 23555555666665543
No 84
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.22 E-value=1.3e-05 Score=87.78 Aligned_cols=179 Identities=13% Similarity=0.120 Sum_probs=100.5
Q ss_pred cccCccccchhcHHHHHHHHhcC--C---------CCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCC
Q 048733 168 VEDDEVVGIESIKDKLIDLMLNG--R---------SKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEY 236 (887)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~--~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 236 (887)
...+.+.|+++.+++|.+.+... . ...+-+.|+|++|+|||++|+.+++. ....| +.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~--- 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVV--- 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecc---
Confidence 34457899999999998877531 0 12456889999999999999999984 33333 2221
Q ss_pred CHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh----------
Q 048733 237 NKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI---------- 306 (887)
Q Consensus 237 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---------- 306 (887)
..++ .....+. ....+...+...-...+.+|+||+++..
T Consensus 189 -~~~l----~~~~~g~--------------------------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~ 237 (364)
T TIGR01242 189 -GSEL----VRKYIGE--------------------------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTS 237 (364)
T ss_pred -hHHH----HHHhhhH--------------------------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCC
Confidence 1111 1111000 0011122222222346789999998753
Q ss_pred ---h---HHHHHHHhcCC--CCCCcEEEEEccchhHHh-h-hccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCCh
Q 048733 307 ---D---FWRDVEHALLD--NKKCSRIIVTTRHMNVAK-F-CKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPS 376 (887)
Q Consensus 307 ---~---~~~~l~~~l~~--~~~gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~ 376 (887)
+ .+..+...+.. ...+..||.||....... . .....-...+.++..+.++..++|..++.+.... ...
T Consensus 238 ~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~--~~~ 315 (364)
T TIGR01242 238 GDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA--EDV 315 (364)
T ss_pred ccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC--ccC
Confidence 1 12222222221 234667888887543221 1 1111112578999999999999999887543211 011
Q ss_pred HHHHHHHHHHHHhCCCc
Q 048733 377 ELKELSQDILAKCGGLP 393 (887)
Q Consensus 377 ~~~~~~~~I~~~c~G~P 393 (887)
....+++.+.|..
T Consensus 316 ----~~~~la~~t~g~s 328 (364)
T TIGR01242 316 ----DLEAIAKMTEGAS 328 (364)
T ss_pred ----CHHHHHHHcCCCC
Confidence 1356777777754
No 85
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.21 E-value=6.4e-05 Score=82.59 Aligned_cols=180 Identities=14% Similarity=0.182 Sum_probs=108.9
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCcc--C------------------CCceeEEE
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLK--T------------------HFSCRAWV 230 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~------------------~F~~~~wv 230 (887)
.+++|.+..++.+.+++..+. -...+.++|++|+||||+|+.+.+...-. . +++. +++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~ 91 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEI 91 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence 468999999999999887653 24577899999999999998887641110 0 1111 122
Q ss_pred EeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH-hCCCceEEEEeccCCh--h
Q 048733 231 TVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH-LKDKSYMVVLDDVWKI--D 307 (887)
Q Consensus 231 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~~--~ 307 (887)
........ +-+++ +.+.+... ..+++-++|+|+++.. .
T Consensus 92 ~~~~~~~~-~~~~~--------------------------------------l~~~~~~~p~~~~~~vviidea~~l~~~ 132 (355)
T TIGR02397 92 DAASNNGV-DDIRE--------------------------------------ILDNVKYAPSSGKYKVYIIDEVHMLSKS 132 (355)
T ss_pred eccccCCH-HHHHH--------------------------------------HHHHHhcCcccCCceEEEEeChhhcCHH
Confidence 11111111 01111 22211110 1234558999999655 5
Q ss_pred HHHHHHHhcCCCCCCcEEEEEccchh-HHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHH
Q 048733 308 FWRDVEHALLDNKKCSRIIVTTRHMN-VAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDIL 386 (887)
Q Consensus 308 ~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~ 386 (887)
..+.+...+......+.+|++|.+.. +...... ....+++.+++.++..+++...+-..+. .-..+.+..|+
T Consensus 133 ~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~s--r~~~~~~~~~~~~~l~~~l~~~~~~~g~-----~i~~~a~~~l~ 205 (355)
T TIGR02397 133 AFNALLKTLEEPPEHVVFILATTEPHKIPATILS--RCQRFDFKRIPLEDIVERLKKILDKEGI-----KIEDEALELIA 205 (355)
T ss_pred HHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHh--heeEEEcCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHH
Confidence 67778777765555667666665443 2222211 2267899999999999888886633221 11246778899
Q ss_pred HHhCCCchHHHH
Q 048733 387 AKCGGLPLAIVA 398 (887)
Q Consensus 387 ~~c~G~PLai~~ 398 (887)
+.++|.|..+..
T Consensus 206 ~~~~g~~~~a~~ 217 (355)
T TIGR02397 206 RAADGSLRDALS 217 (355)
T ss_pred HHcCCChHHHHH
Confidence 999998865543
No 86
>PRK09087 hypothetical protein; Validated
Probab=98.21 E-value=6.5e-05 Score=75.70 Aligned_cols=92 Identities=8% Similarity=-0.008 Sum_probs=58.6
Q ss_pred EEEEeccCCh----hHHHHHHHhcCCCCCCcEEEEEccch---------hHHhhhccCCCcceeecCCCChhhHHHHHHH
Q 048733 297 MVVLDDVWKI----DFWRDVEHALLDNKKCSRIIVTTRHM---------NVAKFCKLSSSVRIHELETLPPDEAWKLFCR 363 (887)
Q Consensus 297 LlVlDdv~~~----~~~~~l~~~l~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~ 363 (887)
+|++||+... +.+-.+...+.. .|..||+|++.. ...+.+... ..+++++++.++-.+++.+
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~g---l~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAA---TVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCC---ceeecCCCCHHHHHHHHHH
Confidence 7888999543 233333333332 256788888742 233333332 7899999999999999998
Q ss_pred hhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 048733 364 KAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVA 398 (887)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 398 (887)
++-... ..-.+++..-|++.+.|..-++..
T Consensus 165 ~~~~~~-----~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 165 LFADRQ-----LYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHcC-----CCCCHHHHHHHHHHhhhhHHHHHH
Confidence 874321 112257777888888887766554
No 87
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=4.8e-05 Score=86.59 Aligned_cols=193 Identities=16% Similarity=0.120 Sum_probs=106.9
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
++++|-+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++...-..... ...+..-.....+..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pcg~C~~C~~i~~--- 84 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVT-------ATPCGVCSACLEIDS--- 84 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhc---
Confidence 468999999999999888654 234677999999999999999977421110000 000000011111100
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH----hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH----LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSR 324 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 324 (887)
... .+... .. .......+++.+.+... ..+++-++|+|+++.. +..+.+...+......+.
T Consensus 85 -~~~--~d~~e---------i~-~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 85 -GRF--VDLIE---------VD-AASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred -CCC--CceeE---------ee-ccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 000 00000 00 00011223222222111 1345679999999865 457778877776555666
Q ss_pred EEEEccc-hhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCch
Q 048733 325 IIVTTRH-MNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPL 394 (887)
Q Consensus 325 iivTtR~-~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 394 (887)
+|++|.+ ..+.... .+....+++++++.++..+.+.+.+-..+ .....+....|++.++|.+-
T Consensus 152 fIL~t~d~~kil~tI--~SRc~~~~f~~l~~~~i~~~L~~il~~eg-----i~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 152 FILATTDPQKIPVTV--LSRCLQFNLKQMPPPLIVSHLQHILEQEN-----IPFDATALQLLARAAAGSMR 215 (527)
T ss_pred EEEEeCChhhCchhH--HHHHHHHhcCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHH
Confidence 6665543 3222111 11127889999999999988877653221 11224566888999999775
No 88
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.2e-07 Score=93.60 Aligned_cols=174 Identities=21% Similarity=0.133 Sum_probs=123.0
Q ss_pred cccccccccccCceecch-HHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCccccccc
Q 048733 687 GLQSLRGLLALPTIEADS-QVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQ 765 (887)
Q Consensus 687 ~L~~L~~~~~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 765 (887)
.||.|+ ++...+.. .....+..|.+|+.|++.+.. ..+.+...+++-.+|+.|+++.++......+.-+...++
T Consensus 186 Rlq~lD----LS~s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLD----LSNSVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS 260 (419)
T ss_pred hhHHhh----cchhheeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence 355555 44444433 344557889999999998633 455678889999999999999887655544445555566
Q ss_pred ccceeEEeeccC---CCChhhhc-CCCcceeEEEecc--cCCcCc----CcCcccceeeeCcCCCcee-EEEcCCCccCc
Q 048733 766 HLQYLSLRGNMK---KLPDWILK-LKNLIGSRLILSG--LTEDPI----SWFPKLRKLVLLNFEAVKS-VIIEKGAMPDI 834 (887)
Q Consensus 766 ~L~~L~L~~~~~---~lp~~~~~-l~~L~~L~L~~~~--l~~~~~----~~~~~L~~L~l~~~~~l~~-~~~~~~~lp~L 834 (887)
.|..|+|+-+.. .....+.+ -++|+.|+|++|. +....+ ..+|+|.+|+|+++..++. ...++-.|+.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 899999986542 22222333 3789999999986 222222 2799999999999987764 22345579999
Q ss_pred cEEEEccCCCCCcccc---ccccCCCCCEEEEEech
Q 048733 835 RELWIGPCPLLMEIPI---GIDHLRNLELLTFHDMS 867 (887)
Q Consensus 835 ~~L~l~~c~~l~~lp~---~~~~l~~L~~L~l~~c~ 867 (887)
++|.++.|..+ +|. .+...|+|..|++.+|-
T Consensus 341 ~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 341 QHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 99999999854 344 45788999999999984
No 89
>PRK08727 hypothetical protein; Validated
Probab=98.18 E-value=3.6e-05 Score=78.32 Aligned_cols=146 Identities=15% Similarity=0.068 Sum_probs=85.4
Q ss_pred EEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEE 274 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (887)
..+.|+|.+|+|||.|++.+++.. ......+.++++.+ ....+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~------~~~~~~---------------------------- 85 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA------AAGRLR---------------------------- 85 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH------hhhhHH----------------------------
Confidence 469999999999999999998852 22223445665321 111110
Q ss_pred cccCCHHHHHHHHHHHhCCCceEEEEeccCCh---hHHHHHHHhcCC--CCCCcEEEEEccchh---------HHhhhcc
Q 048733 275 IHNMEETDLITTLRDHLKDKSYMVVLDDVWKI---DFWRDVEHALLD--NKKCSRIIVTTRHMN---------VAKFCKL 340 (887)
Q Consensus 275 ~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~--~~~gs~iivTtR~~~---------v~~~~~~ 340 (887)
..+ +.+ .+.-+|||||+... ..|....-.+.. ...|..||+|++... ..+....
T Consensus 86 ----------~~~-~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~ 153 (233)
T PRK08727 86 ----------DAL-EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQ 153 (233)
T ss_pred ----------HHH-HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhc
Confidence 111 111 13358999999643 234432222221 123567999998532 1122111
Q ss_pred CCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHH
Q 048733 341 SSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAI 396 (887)
Q Consensus 341 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 396 (887)
...+++++++.++-.+++.+++.... ..-.+++..-|++.++|-.-.+
T Consensus 154 ---~~~~~l~~~~~e~~~~iL~~~a~~~~-----l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 154 ---CIRIGLPVLDDVARAAVLRERAQRRG-----LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred ---CceEEecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHhCCCCHHHH
Confidence 26889999999999999998764321 1122566777888887654433
No 90
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=4.8e-05 Score=85.85 Aligned_cols=200 Identities=16% Similarity=0.137 Sum_probs=111.4
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
..++|.+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++...-. -|... ..+......+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~------~~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCL------NPKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCC------CCCCC-CCCcccHHHHHHHcCCC
Confidence 478999999999999887654 23568899999999999999998742111 12111 11111122222211100
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH----hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH----LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSR 324 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 324 (887)
. +.. . .. .......+++.+.+... ..+++-++|+|+++.. ..++.+...+......+.
T Consensus 88 ~------Dii-e-Id--------aas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tv 151 (605)
T PRK05896 88 V------DIV-E-LD--------AASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVV 151 (605)
T ss_pred C------ceE-E-ec--------cccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEE
Confidence 0 000 0 00 00011223222221111 1233447999999764 567888887765555566
Q ss_pred EEEEc-cchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCch-HHHHHhh
Q 048733 325 IIVTT-RHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPL-AIVAVGG 401 (887)
Q Consensus 325 iivTt-R~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~~ 401 (887)
+|++| ....+..... +....+++.+++.++....+.+.+-..+. .-..+.+..|++.++|.+- |+..+-.
T Consensus 152 fIL~Tt~~~KLl~TI~--SRcq~ieF~~Ls~~eL~~~L~~il~kegi-----~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 152 FIFATTEFQKIPLTII--SRCQRYNFKKLNNSELQELLKSIAKKEKI-----KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred EEEECCChHhhhHHHH--hhhhhcccCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 65554 4333322211 12278999999999999888876533211 1124567789999999664 4444443
No 91
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.18 E-value=4.5e-07 Score=89.47 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=16.4
Q ss_pred eeeecCccccccchhhhcccccCeeeeccc
Q 048733 633 ILDLAHTFVSELPEEIRNLKKLRSLIVFHY 662 (887)
Q Consensus 633 ~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~ 662 (887)
+|||++|.|..+-.++.-+|+++.|+++.|
T Consensus 288 elDLS~N~I~~iDESvKL~Pkir~L~lS~N 317 (490)
T KOG1259|consen 288 ELDLSGNLITQIDESVKLAPKLRRLILSQN 317 (490)
T ss_pred hccccccchhhhhhhhhhccceeEEecccc
Confidence 445555555555555555555555555554
No 92
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.18 E-value=2.5e-06 Score=90.07 Aligned_cols=64 Identities=23% Similarity=0.220 Sum_probs=49.1
Q ss_pred HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCC--CHHHHHHHHH
Q 048733 181 DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEY--NKNDLLRTII 246 (887)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i~ 246 (887)
-++++++..-. ...-..|+|++|+||||||+.+|++.... +|++++||.+.+.+ ++.++.+.|.
T Consensus 157 ~rvID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 157 TRIIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred eeeeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 34566555432 23467899999999999999999975444 89999999999887 6777777775
No 93
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.17 E-value=9.4e-05 Score=75.60 Aligned_cols=194 Identities=16% Similarity=0.151 Sum_probs=117.1
Q ss_pred hcHHHHHHHHhcCC-CCcEEEEEEccCCCCHHHHHHHHhcccCc----cCCCceeEEEEeCCCCCHHHHHHHHHHHHhhc
Q 048733 178 SIKDKLIDLMLNGR-SKRSVVAVVGEGGLGKTTLAGKLFNNEGL----KTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRL 252 (887)
Q Consensus 178 ~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 252 (887)
+.++++.+++..+. .....+.|||.+|.|||++++.+.+..-. ...--.++.|......+...++..|+.+++..
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 44566666666543 34577999999999999999999864211 11112466778888999999999999999876
Q ss_pred cCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCC-CceEEEEeccCCh-----hHHHH---HHHhcCCCCCCc
Q 048733 253 SKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKD-KSYMVVLDDVWKI-----DFWRD---VEHALLDNKKCS 323 (887)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~~~-----~~~~~---l~~~l~~~~~gs 323 (887)
.. ...+...+...+...++. +-=+||+|.+.+. ..-.. ....|...-.=+
T Consensus 124 ~~---------------------~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ip 182 (302)
T PF05621_consen 124 YR---------------------PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIP 182 (302)
T ss_pred cC---------------------CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCC
Confidence 43 112334555555566654 4458999999764 12222 233333333345
Q ss_pred EEEEEccchhHHhhhcc--CCCcceeecCCCChhhHH-HHHHHhh--cCCCCCCCCChHHHHHHHHHHHHhCCCch
Q 048733 324 RIIVTTRHMNVAKFCKL--SSSVRIHELETLPPDEAW-KLFCRKA--FGPSSGGCCPSELKELSQDILAKCGGLPL 394 (887)
Q Consensus 324 ~iivTtR~~~v~~~~~~--~~~~~~~~l~~L~~~e~~-~lf~~~~--~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 394 (887)
-|.+-|+...-+-..+. .+....+.+++...++-+ .|+.... ++-. ....-...++++.|...++|+.=
T Consensus 183 iV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr--~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 183 IVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLR--KPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred eEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCC--CCCCCCCHHHHHHHHHHcCCchH
Confidence 56666665332221111 123467888888765544 4443321 2221 12223457889999999999763
No 94
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.14 E-value=2.9e-05 Score=90.06 Aligned_cols=190 Identities=18% Similarity=0.181 Sum_probs=106.8
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCC---ceeEEEEeCCC---CCHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF---SCRAWVTVGKE---YNKNDLLRT 244 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~v~~~---~~~~~~~~~ 244 (887)
+.++|++..+..+.+.+.... ...+.|+|++|+||||||+.+++.......+ ....|+.+... .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 368899999999888775433 4568899999999999999998764333322 12345544321 222222111
Q ss_pred HHHH------------HhhccCCC-CCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--hHH
Q 048733 245 IIKE------------FHRLSKHG-RDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI--DFW 309 (887)
Q Consensus 245 i~~~------------l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~ 309 (887)
++.. +....... .........+...-.+ +...++ ...+..+.+.++++++.++-|+.|.. ..|
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LD-Ei~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFID-EIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEe-ccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccc
Confidence 1110 00000000 0000000000000001 122333 34577888889899999997777654 368
Q ss_pred HHHHHhcCCCCCCcEEEE--EccchhH-HhhhccCCCcceeecCCCChhhHHHHHHHhhc
Q 048733 310 RDVEHALLDNKKCSRIIV--TTRHMNV-AKFCKLSSSVRIHELETLPPDEAWKLFCRKAF 366 (887)
Q Consensus 310 ~~l~~~l~~~~~gs~iiv--TtR~~~v-~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 366 (887)
+.+...+....+...+++ ||++... ..... +....+.+.+++.++.++++.+.+-
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLr--SR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALR--SRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHH--hceeEEEeCCCCHHHHHHHHHHHHH
Confidence 888766666655555555 6665432 11111 1225778999999999999998763
No 95
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=6.1e-05 Score=83.25 Aligned_cols=201 Identities=15% Similarity=0.116 Sum_probs=111.9
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEE-eCCCCCHHHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT-VGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~~~~~i~~~l 249 (887)
++++|.+..++.|..++..+. -...+.++|+.|+||||+|..+++...-...+....|.. ....+..-...+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 478999999999988888654 234578999999999999999887422111111111110 001111111111111100
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-----CCCceEEEEeccCCh--hHHHHHHHhcCCCCCC
Q 048733 250 HRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-----KDKSYMVVLDDVWKI--DFWRDVEHALLDNKKC 322 (887)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~g 322 (887)
..+.. ..+ .......+++.+. .+.+ .+.+-++|+|+++.. +.++.+...+......
T Consensus 95 ~~n~~--------~~~--------~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~ 157 (397)
T PRK14955 95 SLNIS--------EFD--------AASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPH 157 (397)
T ss_pred CCCeE--------eec--------ccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCC
Confidence 00000 000 0011123333332 2222 245568899999755 4788888888766666
Q ss_pred cEEEEEc-cchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHH
Q 048733 323 SRIIVTT-RHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAI 396 (887)
Q Consensus 323 s~iivTt-R~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 396 (887)
+.+|++| +...+..... .....+++.+++.++..+.+...+-..+ ..-..+.+..|++.++|.+--+
T Consensus 158 t~~Il~t~~~~kl~~tl~--sR~~~v~f~~l~~~ei~~~l~~~~~~~g-----~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 158 AIFIFATTELHKIPATIA--SRCQRFNFKRIPLEEIQQQLQGICEAEG-----ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred eEEEEEeCChHHhHHHHH--HHHHHhhcCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHH
Confidence 6666554 4433332211 1126789999999999888887653221 1122577888999999977533
No 96
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.12 E-value=5.3e-05 Score=77.19 Aligned_cols=148 Identities=12% Similarity=0.139 Sum_probs=86.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPE 273 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 273 (887)
...+.|+|+.|+|||+|++.+++... ..-..+.++++.....
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~------------------------------------ 86 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW------------------------------------ 86 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh------------------------------------
Confidence 35788999999999999999988422 2223345555432000
Q ss_pred ccccCCHHHHHHHHHHHhCCCceEEEEeccCCh---hHHHHHH-HhcCC-CCCC-cEEEEEccchh---------HHhhh
Q 048733 274 EIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI---DFWRDVE-HALLD-NKKC-SRIIVTTRHMN---------VAKFC 338 (887)
Q Consensus 274 ~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~-~~l~~-~~~g-s~iivTtR~~~---------v~~~~ 338 (887)
...++.+.+. +--+|++||+... ..|+... ..+.. ...| .++|+||+... ..+.+
T Consensus 87 -----~~~~~~~~~~-----~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl 156 (235)
T PRK08084 87 -----FVPEVLEGME-----QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRL 156 (235)
T ss_pred -----hhHHHHHHhh-----hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHH
Confidence 0011111111 1248999999653 3555433 22211 1123 47899988652 22333
Q ss_pred ccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 048733 339 KLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIV 397 (887)
Q Consensus 339 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 397 (887)
.+. .++++++++.++-.+++.+++.... ..-.+++..-|++.+.|..-++.
T Consensus 157 ~~g---~~~~l~~~~~~~~~~~l~~~a~~~~-----~~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 157 DWG---QIYKLQPLSDEEKLQALQLRARLRG-----FELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred hCC---ceeeecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHhhcCCHHHHH
Confidence 332 7899999999999999888664321 11225677778888877554443
No 97
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.11 E-value=2e-06 Score=96.05 Aligned_cols=177 Identities=27% Similarity=0.322 Sum_probs=111.6
Q ss_pred cCCCceeEEEEecCCCCCCCcccccccc-ccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccch
Q 048733 594 IANFKLMKVLDLEDSPINYLPEGVGNLF-NLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPT 672 (887)
Q Consensus 594 ~~~~~~Lr~L~L~~~~l~~lp~~i~~L~-~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 672 (887)
+..++.+..|++.++.+..+|..++.+. +|+.|++++| .+..+|..+.++++|+.|++++|
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N--------~i~~l~~~~~~l~~L~~L~l~~N---------- 173 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN--------KIESLPSPLRNLPNLKNLDLSFN---------- 173 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhccccccccc--------chhhhhhhhhccccccccccCCc----------
Confidence 3445778888888888888888888885 8888877765 47778777888888888888887
Q ss_pred hhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCc
Q 048733 673 EAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKE 752 (887)
Q Consensus 673 ~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 752 (887)
....+|...+.+++ |+.|.++++ ....++..+....+|+.|.+..|...
T Consensus 174 -~l~~l~~~~~~~~~----------------------------L~~L~ls~N--~i~~l~~~~~~~~~L~~l~~~~N~~~ 222 (394)
T COG4886 174 -DLSDLPKLLSNLSN----------------------------LNNLDLSGN--KISDLPPEIELLSALEELDLSNNSII 222 (394)
T ss_pred -hhhhhhhhhhhhhh----------------------------hhheeccCC--ccccCchhhhhhhhhhhhhhcCCcce
Confidence 44444443334444 444444432 11223333333445666666655321
Q ss_pred cccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcC-cCcCcccceeeeCcCCCce
Q 048733 753 EILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDP-ISWFPKLRKLVLLNFEAVK 822 (887)
Q Consensus 753 ~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~-~~~~~~L~~L~l~~~~~l~ 822 (887)
.. +..+.... ++..|.+.++. ..++..+..+++|+.|++++|.+...+ ...+.+|+.|++.++....
T Consensus 223 ~~--~~~~~~~~-~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 223 EL--LSSLSNLK-NLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ec--chhhhhcc-cccccccCCceeeeccchhccccccceeccccccccccccccccCccCEEeccCccccc
Confidence 11 11222222 56666665554 345778888888999999998877643 5567778888887765433
No 98
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.11 E-value=0.0002 Score=77.21 Aligned_cols=147 Identities=19% Similarity=0.267 Sum_probs=85.3
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
++++|.+...+.+..++..+. ...++.++|++|+||||+|+.+++. .... ...++.+. .. .+.+++.+..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~-~~~i~~~l~~~~ 92 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CR-IDFVRNRLTRFA 92 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-cc-HHHHHHHHHHHH
Confidence 578999999999999988643 3467778999999999999999884 2222 22333333 11 122222111111
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh---hHHHHHHHhcCCCCCCcEEEE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI---DFWRDVEHALLDNKKCSRIIV 327 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iiv 327 (887)
... -+.+.+-+||+||++.. +....+...+.....++++|+
T Consensus 93 ~~~------------------------------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Il 136 (316)
T PHA02544 93 STV------------------------------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFII 136 (316)
T ss_pred Hhh------------------------------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEE
Confidence 100 01134558999999755 233344444555556778888
Q ss_pred EccchhH-HhhhccCCCcceeecCCCChhhHHHHHHH
Q 048733 328 TTRHMNV-AKFCKLSSSVRIHELETLPPDEAWKLFCR 363 (887)
Q Consensus 328 TtR~~~v-~~~~~~~~~~~~~~l~~L~~~e~~~lf~~ 363 (887)
||..... ..... +....+.++..+.++..+++..
T Consensus 137 t~n~~~~l~~~l~--sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 137 TANNKNGIIEPLR--SRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EcCChhhchHHHH--hhceEEEeCCCCHHHHHHHHHH
Confidence 8865421 11111 1124667767777776655543
No 99
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.10 E-value=3.9e-05 Score=78.19 Aligned_cols=173 Identities=13% Similarity=0.073 Sum_probs=92.5
Q ss_pred ccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhcc
Q 048733 174 VGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLS 253 (887)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~ 253 (887)
.|...........+.........+.|+|+.|+|||+||+.+++... .... ...+++..... .
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~---------- 83 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------L---------- 83 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------H----------
Confidence 3554444333333322222345788999999999999999998521 1111 23344322110 0
Q ss_pred CCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChhHH--HHHHHhcCC-CCCCc-EEEEEc
Q 048733 254 KHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKIDFW--RDVEHALLD-NKKCS-RIIVTT 329 (887)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~--~~l~~~l~~-~~~gs-~iivTt 329 (887)
.+ ... ...-+||+||+...+.+ ..+...+.. ...+. .+|+|+
T Consensus 84 --------------------------------~~-~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~ 129 (227)
T PRK08903 84 --------------------------------AF-DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAG 129 (227)
T ss_pred --------------------------------HH-hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeC
Confidence 00 011 23347999999655322 223333322 12233 467777
Q ss_pred cchhHHhhhc-----cCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHhhhh
Q 048733 330 RHMNVAKFCK-----LSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLL 403 (887)
Q Consensus 330 R~~~v~~~~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l 403 (887)
+......... .......++++++++++-..++.+.+-... ..-.+++...+++.+.|++..+..+...+
T Consensus 130 ~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-----v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 130 PAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG-----LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 6543221100 111126889999999887777665432211 11225677888888999988776655544
No 100
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.10 E-value=1.5e-07 Score=100.91 Aligned_cols=152 Identities=23% Similarity=0.286 Sum_probs=117.3
Q ss_pred CCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhh
Q 048733 570 KDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIR 649 (887)
Q Consensus 570 ~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~ 649 (887)
.+..|.++.+..+.. ..++..+.++..|..|||+.|.+..+|..+|.|+ |+.|-+++| +++.+|.+|+
T Consensus 96 ~f~~Le~liLy~n~~---r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN--------kl~~lp~~ig 163 (722)
T KOG0532|consen 96 AFVSLESLILYHNCI---RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN--------KLTSLPEEIG 163 (722)
T ss_pred HHHHHHHHHHHhccc---eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC--------ccccCCcccc
Confidence 455566666665543 3456778899999999999999999999999887 788877765 5889999999
Q ss_pred cccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChh
Q 048733 650 NLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGR 729 (887)
Q Consensus 650 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 729 (887)
.+..|.+|+.+.| ....+|..++.|++|..|. +..++. ...+.+++.| .|.+|++++| ...
T Consensus 164 ~~~tl~~ld~s~n-----------ei~slpsql~~l~slr~l~----vrRn~l-~~lp~El~~L-pLi~lDfScN--kis 224 (722)
T KOG0532|consen 164 LLPTLAHLDVSKN-----------EIQSLPSQLGYLTSLRDLN----VRRNHL-EDLPEELCSL-PLIRLDFSCN--KIS 224 (722)
T ss_pred cchhHHHhhhhhh-----------hhhhchHHhhhHHHHHHHH----Hhhhhh-hhCCHHHhCC-ceeeeecccC--cee
Confidence 9999999999988 6778888899999998887 333333 2345666644 3778888865 344
Q ss_pred HHHHHHhcccCCcEEEEeecCCc
Q 048733 730 DLCALIANLENVETLGVLMKSKE 752 (887)
Q Consensus 730 ~l~~~l~~~~~L~~L~l~~~~~~ 752 (887)
.+|..+.+|.+|+.|-|.+|...
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC
Confidence 57888999999999999888653
No 101
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.10 E-value=3.2e-06 Score=80.51 Aligned_cols=83 Identities=25% Similarity=0.303 Sum_probs=26.3
Q ss_pred cCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchh
Q 048733 568 SIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEE 647 (887)
Q Consensus 568 ~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~ 647 (887)
..++.++|.|.+.++... .+...-..+..|++|+|++|.+..++ .+..|++|+.|++++| .|..++..
T Consensus 15 ~~n~~~~~~L~L~~n~I~---~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N--------~I~~i~~~ 82 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS---TIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN--------RISSISEG 82 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS-----------S-CHH
T ss_pred cccccccccccccccccc---cccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC--------CCCccccc
Confidence 345567788888877652 12121125677888888888888775 5677788887777765 47777766
Q ss_pred hh-cccccCeeeeccc
Q 048733 648 IR-NLKKLRSLIVFHY 662 (887)
Q Consensus 648 i~-~l~~L~~L~l~~~ 662 (887)
+. .+++|++|++++|
T Consensus 83 l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNN 98 (175)
T ss_dssp HHHH-TT--EEE-TTS
T ss_pred hHHhCCcCCEEECcCC
Confidence 64 6889999999887
No 102
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=8.9e-05 Score=85.05 Aligned_cols=198 Identities=16% Similarity=0.126 Sum_probs=112.4
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCce--eEEEEeCCCCCHHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSC--RAWVTVGKEYNKNDLLRTIIKE 248 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~v~~~~~~~~~~~~i~~~ 248 (887)
.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.......... ..+ ..+......+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHhcC
Confidence 578999999999999988754 2346789999999999999999874211111000 000 001111111122111
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-----CCCceEEEEeccCCh--hHHHHHHHhcCCCCC
Q 048733 249 FHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-----KDKSYMVVLDDVWKI--DFWRDVEHALLDNKK 321 (887)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~ 321 (887)
-..+.. +-.+ ......+++.+.+ +.+ .+++-++|+|+++.. ...+.+...+.....
T Consensus 99 ~h~Dv~--------------e~~a--~s~~gvd~IReIi-e~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~ 161 (598)
T PRK09111 99 RHVDVL--------------EMDA--ASHTGVDDIREII-ESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPP 161 (598)
T ss_pred CCCceE--------------Eecc--cccCCHHHHHHHH-HHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCC
Confidence 000000 0000 0112233333222 222 234558999999755 457778877766555
Q ss_pred CcEEEEEc-cchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 048733 322 CSRIIVTT-RHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIV 397 (887)
Q Consensus 322 gs~iivTt-R~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 397 (887)
.+.+|++| ....+..... +....+++++++.++....+.+.+-..+ ..-..+....|++.++|.+.-+.
T Consensus 162 ~~~fIl~tte~~kll~tI~--SRcq~~~f~~l~~~el~~~L~~i~~keg-----i~i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 162 HVKFIFATTEIRKVPVTVL--SRCQRFDLRRIEADVLAAHLSRIAAKEG-----VEVEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred CeEEEEEeCChhhhhHHHH--hheeEEEecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 66666544 4444332221 2237899999999999999888763322 11224677889999999886544
No 103
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.07 E-value=1.4e-06 Score=88.44 Aligned_cols=232 Identities=17% Similarity=0.139 Sum_probs=115.7
Q ss_pred CCceEEEEecCCCcc------ccccCCCCceeEEEeecCCCC-C-------ccccccccCCCceeEEEEecCCCCC-CCc
Q 048733 550 SKTRRITIQRSIDDG------ALESIKDSKVRSVILFNVDKL-P-------DSFVKSCIANFKLMKVLDLEDSPIN-YLP 614 (887)
Q Consensus 550 ~~~r~lsi~~~~~~~------~~~~~~~~~lrsL~~~~~~~~-~-------~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp 614 (887)
..+..+.++++.... ..-....+.||...+.+.... . ...+...+.+++.|++||||+|-|. .-+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 345667777654421 101123345666555543221 0 1233345678889999999999876 222
Q ss_pred ----cccccccccceeecCCCceeeecCcccccc--------------chhhhcccccCeeeecccccccccccchhhhh
Q 048733 615 ----EGVGNLFNLHLLNARNTKILDLAHTFVSEL--------------PEEIRNLKKLRSLIVFHYKYITGSIIPTEAAA 676 (887)
Q Consensus 615 ----~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~l--------------p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 676 (887)
.-+..++.|+.|.|.+|. +... -+-+.+-++||.+...+|....+ .-.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~G--------lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~------ga~ 175 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCG--------LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG------GAT 175 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCC--------CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc------cHH
Confidence 335567888888888764 3311 11223456777777776632111 112
Q ss_pred hccCCccccccccccccccccCceecch----HHHHHhhccccccceeEEeccC---ChhHHHHHHhcccCCcEEEEeec
Q 048733 677 KIHRGFGSLRGLQSLRGLLALPTIEADS----QVLKELMMLRQLNMLSIRRQNG---NGRDLCALIANLENVETLGVLMK 749 (887)
Q Consensus 677 ~~p~~i~~L~~L~~L~~~~~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~---~~~~l~~~l~~~~~L~~L~l~~~ 749 (887)
.+...+...+.|++++ ++.+.+.. .....+..+++|++|++..|.. ....+...+..+++|+.|+++.|
T Consensus 176 ~~A~~~~~~~~leevr----~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVR----LSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHHHHHHhccccceEE----EecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 2223344445555555 33333311 2334455666666666665322 22334555556666666666655
Q ss_pred CCcccc---ccCcccccccccceeEEeecc------CCCChhhhcCCCcceeEEEeccc
Q 048733 750 SKEEIL---DLQSLSSPPQHLQYLSLRGNM------KKLPDWILKLKNLIGSRLILSGL 799 (887)
Q Consensus 750 ~~~~~~---~l~~l~~~~~~L~~L~L~~~~------~~lp~~~~~l~~L~~L~L~~~~l 799 (887)
.....- ....+....++|+.|.+.||- ..+-..+...+.|.+|+|++|.+
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 332211 011111111256666665542 01222233455666666666655
No 104
>PF14516 AAA_35: AAA-like domain
Probab=98.07 E-value=0.00075 Score=72.56 Aligned_cols=214 Identities=15% Similarity=0.171 Sum_probs=124.2
Q ss_pred cCccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCC-----CCHHHHHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE-----YNKNDLLRT 244 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~~~~~~ 244 (887)
....|.|...-+++.+.+... ...+.|.|+-.+|||+|...+.+..+.. .+. .+++++... .+...+++.
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHHHHHH
Confidence 345678886666666666652 2489999999999999999998753332 343 456765542 346677777
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCcccc--ccCCHHHHHHHHHHHh---CCCceEEEEeccCChh--------HHHH
Q 048733 245 IIKEFHRLSKHGRDGPDRHAEGPLLPTPEEI--HNMEETDLITTLRDHL---KDKSYMVVLDDVWKID--------FWRD 311 (887)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~L---~~kr~LlVlDdv~~~~--------~~~~ 311 (887)
+...+......... .++.. ...........+.+.+ .+++.+|+||+++..- -+..
T Consensus 85 ~~~~i~~~L~l~~~------------l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~ 152 (331)
T PF14516_consen 85 FCEEISRQLKLDEK------------LDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGL 152 (331)
T ss_pred HHHHHHHHcCCChh------------HHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHH
Confidence 77777664331110 00000 0012234444555543 2589999999997531 1222
Q ss_pred HHHhcCCCC-----CCcEEEEE--ccchhHHhh-hccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHH
Q 048733 312 VEHALLDNK-----KCSRIIVT--TRHMNVAKF-CKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQ 383 (887)
Q Consensus 312 l~~~l~~~~-----~gs~iivT--tR~~~v~~~-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~ 383 (887)
++....... ..-++++. |+....... -........++|++++.+|...|+.++-... . ....+
T Consensus 153 LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~------~---~~~~~ 223 (331)
T PF14516_consen 153 LRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF------S---QEQLE 223 (331)
T ss_pred HHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC------C---HHHHH
Confidence 222111111 11122222 111111111 0011123588999999999999998864221 1 23388
Q ss_pred HHHHHhCCCchHHHHHhhhhcCCCCC
Q 048733 384 DILAKCGGLPLAIVAVGGLLSTKNRI 409 (887)
Q Consensus 384 ~I~~~c~G~PLai~~~~~~l~~~~~~ 409 (887)
+|...++|+|.-+..++..+.....+
T Consensus 224 ~l~~~tgGhP~Lv~~~~~~l~~~~~~ 249 (331)
T PF14516_consen 224 QLMDWTGGHPYLVQKACYLLVEEQIT 249 (331)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHccCc
Confidence 99999999999999999999775443
No 105
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=0.00011 Score=87.41 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=109.4
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
.++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+.+...-...... ..+..-...+.|...
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~g-- 84 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAPG-- 84 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHcC--
Confidence 478999999999999988754 2356789999999999999999875221111100 001111111111100
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH-----hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCc
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH-----LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCS 323 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 323 (887)
.. ...+. .+ . ........+++.+ +++. ..++.-++|||+++.. +.++.|+..+..-...+
T Consensus 85 --~~---~~~dv-~e-----i-daas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~ 151 (824)
T PRK07764 85 --GP---GSLDV-TE-----I-DAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHL 151 (824)
T ss_pred --CC---CCCcE-EE-----e-cccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCe
Confidence 00 00000 00 0 0001112333322 2221 2345568999999765 57788888887665566
Q ss_pred EEEEEc-cchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCch
Q 048733 324 RIIVTT-RHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPL 394 (887)
Q Consensus 324 ~iivTt-R~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 394 (887)
.+|++| ....+...+. +....|++.+++.++..+++.+.+-..+ .....+....|++.++|.+.
T Consensus 152 ~fIl~tt~~~kLl~TIr--SRc~~v~F~~l~~~~l~~~L~~il~~EG-----v~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 152 KFIFATTEPDKVIGTIR--SRTHHYPFRLVPPEVMRGYLERICAQEG-----VPVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred EEEEEeCChhhhhHHHH--hheeEEEeeCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHH
Confidence 666555 4333333222 2237899999999998888877652221 11124556788999999774
No 106
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.06 E-value=0.00013 Score=73.35 Aligned_cols=178 Identities=15% Similarity=0.187 Sum_probs=96.6
Q ss_pred cccchh-cHHHHHHHHhcC-CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 173 VVGIES-IKDKLIDLMLNG-RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 173 ~vGr~~-~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
++|-.. ..-.....+.+. ......+.|+|..|+|||.|.+.+++.......-..+++++ ..++...+...+.
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~ 84 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALR 84 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHH
Confidence 356432 233444444443 33345688999999999999999998522111112344544 4566666666554
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh---hHHHHHHHhc-CC-CCCCcEE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI---DFWRDVEHAL-LD-NKKCSRI 325 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l-~~-~~~gs~i 325 (887)
.. . ...+++.++ .-=+|++||++.. ..|.+..-.+ .. ...|.+|
T Consensus 85 ~~--------------------------~----~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~l 133 (219)
T PF00308_consen 85 DG--------------------------E----IEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQL 133 (219)
T ss_dssp TT--------------------------S----HHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEE
T ss_pred cc--------------------------c----chhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeE
Confidence 31 1 123444444 3458899999654 2344322222 11 1235689
Q ss_pred EEEccchh---------HHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchH
Q 048733 326 IVTTRHMN---------VAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLA 395 (887)
Q Consensus 326 ivTtR~~~---------v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLa 395 (887)
|+|++... ..+...+. ..+++++.+.++-.+++.+++-...- .-.+++..-|++.+.+..-.
T Consensus 134 i~ts~~~P~~l~~~~~~L~SRl~~G---l~~~l~~pd~~~r~~il~~~a~~~~~-----~l~~~v~~~l~~~~~~~~r~ 204 (219)
T PF00308_consen 134 ILTSDRPPSELSGLLPDLRSRLSWG---LVVELQPPDDEDRRRILQKKAKERGI-----ELPEEVIEYLARRFRRDVRE 204 (219)
T ss_dssp EEEESS-TTTTTTS-HHHHHHHHCS---EEEEE----HHHHHHHHHHHHHHTT-------S-HHHHHHHHHHTTSSHHH
T ss_pred EEEeCCCCccccccChhhhhhHhhc---chhhcCCCCHHHHHHHHHHHHHHhCC-----CCcHHHHHHHHHhhcCCHHH
Confidence 99996542 22233332 68999999999999999988743321 12256666777776654433
No 107
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.05 E-value=0.00044 Score=77.29 Aligned_cols=166 Identities=11% Similarity=0.072 Sum_probs=98.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPE 273 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 273 (887)
..-+.|+|..|+|||.|++.+++.......-..+++++ ..+++..+...+...
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~--------------------- 193 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKT--------------------- 193 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHh---------------------
Confidence 34588999999999999999988421111112233433 346666666665431
Q ss_pred ccccCCHHHHHHHHHHHhCCCceEEEEeccCCh---hHHH-HHHHhcCC-CCCCcEEEEEccchh---------HHhhhc
Q 048733 274 EIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI---DFWR-DVEHALLD-NKKCSRIIVTTRHMN---------VAKFCK 339 (887)
Q Consensus 274 ~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~~-~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~ 339 (887)
......+++.++ +.-+||+||+... +.+. .+...+.. ...|..||+|+.... +...+.
T Consensus 194 -------~~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~ 265 (450)
T PRK14087 194 -------HKEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFN 265 (450)
T ss_pred -------hhHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHh
Confidence 011233444443 3458899999543 2333 23222221 123446888876432 222222
Q ss_pred cCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHh
Q 048733 340 LSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVG 400 (887)
Q Consensus 340 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 400 (887)
+. -.+.+++++.++-.+++.+++-..+. ...-.+++..-|++.++|.|-.+..+.
T Consensus 266 ~G---l~~~L~~pd~e~r~~iL~~~~~~~gl---~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 266 MG---LSIAIQKLDNKTATAIIKKEIKNQNI---KQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred CC---ceeccCCcCHHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 22 57889999999999999998743211 012236788899999999987665444
No 108
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.04 E-value=0.0002 Score=75.10 Aligned_cols=158 Identities=12% Similarity=0.170 Sum_probs=84.3
Q ss_pred ccccchhcHHHHHHHHh---c-------C---CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCH
Q 048733 172 EVVGIESIKDKLIDLML---N-------G---RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNK 238 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~---~-------~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (887)
.++|.++.+++|.++.. . + ..+..-+.++|++|+|||++|+.+++.....+......|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence 46787777766654322 1 1 11223577999999999999977766321111111123444432
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh-----------h
Q 048733 239 NDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI-----------D 307 (887)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~ 307 (887)
.+ ++..+.+. +.......+.+. ..-+|+||++... +
T Consensus 99 ~~----l~~~~~g~--------------------------~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~ 145 (284)
T TIGR02880 99 DD----LVGQYIGH--------------------------TAPKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQE 145 (284)
T ss_pred HH----HhHhhccc--------------------------chHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHH
Confidence 11 22211110 111222222222 2358999999632 2
Q ss_pred HHHHHHHhcCCCCCCcEEEEEccchhHHhhhccC-----CCcceeecCCCChhhHHHHHHHhhc
Q 048733 308 FWRDVEHALLDNKKCSRIIVTTRHMNVAKFCKLS-----SSVRIHELETLPPDEAWKLFCRKAF 366 (887)
Q Consensus 308 ~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~-----~~~~~~~l~~L~~~e~~~lf~~~~~ 366 (887)
.++.+...+.....+.+||.++............ .-...+++++++.+|..+++...+-
T Consensus 146 ~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 146 AIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 3455556665555566777776543322211100 0015789999999999999888763
No 109
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00011 Score=80.70 Aligned_cols=178 Identities=18% Similarity=0.205 Sum_probs=103.4
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCcc------CCCceeE-EEEeCCCCCHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLK------THFSCRA-WVTVGKEYNKNDLLR 243 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~~~-wv~v~~~~~~~~~~~ 243 (887)
++++|.+..++.+.+.+..+. -.+.+.++|++|+||||+|+.+.+..... ..|...+ -+........ +..+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~ 94 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDIR 94 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHHH
Confidence 467999999999999988653 24578899999999999999997742110 1111111 1110000001 1111
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--hHHHHHHHhcCCCCC
Q 048733 244 TIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI--DFWRDVEHALLDNKK 321 (887)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~ 321 (887)
++++++... -..+++-++|+|+++.. ..++.+...+.....
T Consensus 95 ~l~~~~~~~-------------------------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~ 137 (367)
T PRK14970 95 NLIDQVRIP-------------------------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPA 137 (367)
T ss_pred HHHHHHhhc-------------------------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCC
Confidence 111111100 01234558999999654 457777776655444
Q ss_pred CcEEEEEc-cchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCch
Q 048733 322 CSRIIVTT-RHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPL 394 (887)
Q Consensus 322 gs~iivTt-R~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 394 (887)
.+.+|++| ....+..... +....++.+++++++....+.+.+...+. .-..+....|++.++|.+-
T Consensus 138 ~~~~Il~~~~~~kl~~~l~--sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-----~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 138 HAIFILATTEKHKIIPTIL--SRCQIFDFKRITIKDIKEHLAGIAVKEGI-----KFEDDALHIIAQKADGALR 204 (367)
T ss_pred ceEEEEEeCCcccCCHHHH--hcceeEecCCccHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHhCCCCHH
Confidence 55565554 3333222211 12268899999999999888886643321 1124677888888888654
No 110
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.01 E-value=6.9e-05 Score=82.38 Aligned_cols=178 Identities=13% Similarity=0.147 Sum_probs=97.8
Q ss_pred ccCccccchhcHHHHHHHHhcC-----------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCC
Q 048733 169 EDDEVVGIESIKDKLIDLMLNG-----------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYN 237 (887)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 237 (887)
..+.+.|+++.++++.+.+... -...+-|.++|++|+|||++|+.+++. .... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh---
Confidence 3457899999999998876431 123456889999999999999999984 3322 232211
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh-----------
Q 048733 238 KNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI----------- 306 (887)
Q Consensus 238 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~----------- 306 (887)
.++ .....+ .....+...+...-...+.+|+|||++..
T Consensus 199 -~~l----~~~~~g--------------------------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~ 247 (389)
T PRK03992 199 -SEL----VQKFIG--------------------------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSG 247 (389)
T ss_pred -HHH----hHhhcc--------------------------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCc
Confidence 111 111100 00111222222222346789999999753
Q ss_pred --hHHHHHHHhc---CC--CCCCcEEEEEccchhHHhh-h-ccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChH
Q 048733 307 --DFWRDVEHAL---LD--NKKCSRIIVTTRHMNVAKF-C-KLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSE 377 (887)
Q Consensus 307 --~~~~~l~~~l---~~--~~~gs~iivTtR~~~v~~~-~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~ 377 (887)
+....+...+ .. ...+..||.||........ . ....-...+.+++.+.++-.++|..++.+..-+ ....
T Consensus 248 ~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~--~~~~ 325 (389)
T PRK03992 248 DREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA--DDVD 325 (389)
T ss_pred cHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC--CcCC
Confidence 1122233322 11 1235567777765432221 1 111112578999999999999999876433211 1111
Q ss_pred HHHHHHHHHHHhCCCc
Q 048733 378 LKELSQDILAKCGGLP 393 (887)
Q Consensus 378 ~~~~~~~I~~~c~G~P 393 (887)
...+++.+.|.-
T Consensus 326 ----~~~la~~t~g~s 337 (389)
T PRK03992 326 ----LEELAELTEGAS 337 (389)
T ss_pred ----HHHHHHHcCCCC
Confidence 345666666643
No 111
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.01 E-value=1.8e-06 Score=82.11 Aligned_cols=127 Identities=21% Similarity=0.234 Sum_probs=48.9
Q ss_pred HhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcC--c-CcCccc
Q 048733 735 IANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDP--I-SWFPKL 810 (887)
Q Consensus 735 l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~--~-~~~~~L 810 (887)
+.+..++++|++.++..... +.+.....+|+.|+|++|. ..++ .+..+++|+.|++++|.++... + ..||+|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccc---cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 34455789999998866543 3444333489999999875 5555 5667899999999999988753 2 258999
Q ss_pred ceeeeCcCCCceeEE--EcCCCccCccEEEEccCCCCCcccc----ccccCCCCCEEEEEech
Q 048733 811 RKLVLLNFEAVKSVI--IEKGAMPDIRELWIGPCPLLMEIPI----GIDHLRNLELLTFHDMS 867 (887)
Q Consensus 811 ~~L~l~~~~~l~~~~--~~~~~lp~L~~L~l~~c~~l~~lp~----~~~~l~~L~~L~l~~c~ 867 (887)
+.|.+.++. +.++. .....+|+|+.|++.+||... .+. .+..+|+|+.|+-....
T Consensus 91 ~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 91 QELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp -EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEETT
T ss_pred CEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEcc
Confidence 999998764 33331 234578999999999998433 232 66789999999755543
No 112
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00021 Score=81.64 Aligned_cols=203 Identities=16% Similarity=0.115 Sum_probs=111.8
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
++++|.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++...-..... ...+..-...+.|...-.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-------ATPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCcccccHHHHHhhcccC
Confidence 478999999999999988753 234678999999999999999987421111100 001111111111110000
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHH---HHHHHHH-hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDL---ITTLRDH-LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSR 324 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 324 (887)
.. .+ ..+- ........+++ .+.+... ..+++-++|+|++... +..+.++..+........
T Consensus 85 ~~-------~d-viei------daas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~ 150 (584)
T PRK14952 85 GS-------ID-VVEL------DAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLI 150 (584)
T ss_pred CC-------ce-EEEe------ccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeE
Confidence 00 00 0000 00001112222 2222111 1345568999999755 577788888876655666
Q ss_pred EEE-EccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCch-HHHHHhhh
Q 048733 325 IIV-TTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPL-AIVAVGGL 402 (887)
Q Consensus 325 iiv-TtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~~~ 402 (887)
+|+ ||....+...... ....+++.+++.++..+.+.+.+-..+. .-..+....|++.++|.+- |+..+-.+
T Consensus 151 fIL~tte~~kll~TI~S--Rc~~~~F~~l~~~~i~~~L~~i~~~egi-----~i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 151 FIFATTEPEKVLPTIRS--RTHHYPFRLLPPRTMRALIARICEQEGV-----VVDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred EEEEeCChHhhHHHHHH--hceEEEeeCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 655 4444443332221 2278999999999998888776533221 1124566778889998774 44444433
No 113
>PRK05642 DNA replication initiation factor; Validated
Probab=97.99 E-value=0.00015 Score=73.88 Aligned_cols=147 Identities=17% Similarity=0.208 Sum_probs=85.1
Q ss_pred EEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEE 274 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (887)
..+.|+|..|+|||.|++.+++.. ...-..++|++..+ +....
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~~----------------------------- 88 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDRG----------------------------- 88 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhhh-----------------------------
Confidence 568899999999999999998742 22223455665421 11100
Q ss_pred cccCCHHHHHHHHHHHhCCCceEEEEeccCCh---hHHHH-HHHhcCC-CCCCcEEEEEccchhH---------Hhhhcc
Q 048733 275 IHNMEETDLITTLRDHLKDKSYMVVLDDVWKI---DFWRD-VEHALLD-NKKCSRIIVTTRHMNV---------AKFCKL 340 (887)
Q Consensus 275 ~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivTtR~~~v---------~~~~~~ 340 (887)
. .+.+.+++- =+||+||+... ..|.. +...+.. ...|..||+|++.... .+.+.+
T Consensus 89 ------~----~~~~~~~~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~ 157 (234)
T PRK05642 89 ------P----ELLDNLEQY-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTL 157 (234)
T ss_pred ------H----HHHHhhhhC-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhc
Confidence 1 122222222 26889999633 35554 3333321 2235678888875322 111111
Q ss_pred CCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 048733 341 SSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIV 397 (887)
Q Consensus 341 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 397 (887)
...+++++++.++-.+++.+++.... ... .+++..-|++++.|..-.+.
T Consensus 158 ---gl~~~l~~~~~e~~~~il~~ka~~~~--~~l---~~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 158 ---ALVFQMRGLSDEDKLRALQLRASRRG--LHL---TDEVGHFILTRGTRSMSALF 206 (234)
T ss_pred ---CeeeecCCCCHHHHHHHHHHHHHHcC--CCC---CHHHHHHHHHhcCCCHHHHH
Confidence 16788999999999999986664321 111 15677778888777654443
No 114
>CHL00181 cbbX CbbX; Provisional
Probab=97.98 E-value=0.00039 Score=72.82 Aligned_cols=159 Identities=14% Similarity=0.192 Sum_probs=85.1
Q ss_pred ccccchhcHHHHHHHHh---c-------C---CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCH
Q 048733 172 EVVGIESIKDKLIDLML---N-------G---RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNK 238 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~---~-------~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (887)
.++|.+..+++|.++.. - + ......+.++|++|+||||+|+.+++.....+.-....|+.++ .
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~ 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----R 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----H
Confidence 57787777765544421 1 1 1123457899999999999999997742111111111244444 1
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh-----------h
Q 048733 239 NDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI-----------D 307 (887)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~ 307 (887)
.+ +...+.+. ........+... ..-+|+||++... +
T Consensus 100 ~~----l~~~~~g~--------------------------~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e 146 (287)
T CHL00181 100 DD----LVGQYIGH--------------------------TAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSE 146 (287)
T ss_pred HH----HHHHHhcc--------------------------chHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHH
Confidence 12 22222110 011122222222 2349999999642 2
Q ss_pred HHHHHHHhcCCCCCCcEEEEEccchhHHhhhccC-----CCcceeecCCCChhhHHHHHHHhhcC
Q 048733 308 FWRDVEHALLDNKKCSRIIVTTRHMNVAKFCKLS-----SSVRIHELETLPPDEAWKLFCRKAFG 367 (887)
Q Consensus 308 ~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~-----~~~~~~~l~~L~~~e~~~lf~~~~~~ 367 (887)
..+.+...+.....+.+||+++............ .-...+..++++.+|..+++...+-.
T Consensus 147 ~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 147 AIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 3344555555555567777777644332211000 01157899999999999988887643
No 115
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00027 Score=82.02 Aligned_cols=196 Identities=15% Similarity=0.131 Sum_probs=112.3
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
++++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++......... ....+......+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 478999999999998887654 235678999999999999999987421111000 0011122223333322111
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-----CCCceEEEEeccCCh--hHHHHHHHhcCCCCCCc
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-----KDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCS 323 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 323 (887)
.+.- . .. .......+++.+ +.+.+ .+++-++|+|+++.. +..+.+...+......+
T Consensus 89 ~d~~------~---------i~-~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~t 151 (585)
T PRK14950 89 VDVI------E---------MD-AASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHA 151 (585)
T ss_pred CeEE------E---------Ee-ccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCe
Confidence 0000 0 00 001122233322 22222 245668999999654 56777877776655566
Q ss_pred EEEEEccc-hhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 048733 324 RIIVTTRH-MNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIV 397 (887)
Q Consensus 324 ~iivTtR~-~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 397 (887)
.+|++|.+ ..+..... +....+.+++++.++....+.+.+...+. .-..+....|++.++|.+..+.
T Consensus 152 v~Il~t~~~~kll~tI~--SR~~~i~f~~l~~~el~~~L~~~a~~egl-----~i~~eal~~La~~s~Gdlr~al 219 (585)
T PRK14950 152 IFILATTEVHKVPATIL--SRCQRFDFHRHSVADMAAHLRKIAAAEGI-----NLEPGALEAIARAATGSMRDAE 219 (585)
T ss_pred EEEEEeCChhhhhHHHH--hccceeeCCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHH
Confidence 66665543 33332221 12267889999999988888877643221 1124677889999999886444
No 116
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00033 Score=78.73 Aligned_cols=196 Identities=15% Similarity=0.095 Sum_probs=109.7
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
++++|-+..++.|...+..+. -.+++.++|+.|+||||+|+.+++..--....+. ..+..-...+.+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHhhcCC
Confidence 468999999999999987654 3456789999999999999987764110000000 00000000111100000
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH----hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH----LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSR 324 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 324 (887)
.... +. . .......+++.+.+... ..+++-++|+|+++.. +..+.++..+......+.
T Consensus 86 ~dv~----------el-----d-aas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~ 149 (535)
T PRK08451 86 IDII----------EM-----D-AASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVK 149 (535)
T ss_pred CeEE----------Ee-----c-cccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceE
Confidence 0000 00 0 00011123333333221 1145568999999765 467778777766555677
Q ss_pred EEEEccch-hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 048733 325 IIVTTRHM-NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIV 397 (887)
Q Consensus 325 iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 397 (887)
+|++|.+. .+..... +....+++.+++.++....+.+.+-..+ ..-.++.+..|++.++|.+--+.
T Consensus 150 FIL~ttd~~kL~~tI~--SRc~~~~F~~Ls~~ei~~~L~~Il~~EG-----i~i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 150 FILATTDPLKLPATIL--SRTQHFRFKQIPQNSIISHLKTILEKEG-----VSYEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred EEEEECChhhCchHHH--hhceeEEcCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCcHHHHH
Confidence 77666553 2221111 2237899999999999988877653322 11125677889999999885443
No 117
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00027 Score=80.43 Aligned_cols=201 Identities=16% Similarity=0.173 Sum_probs=113.0
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
++++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+++...-..... ...+..-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHhcCCC
Confidence 467899888888888887643 235788999999999999999988522111000 001111112222211100
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH-----hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCc
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH-----LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCS 323 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 323 (887)
. +... . ........+++. .+.+. ..+++-++|+|+++.. +.++.+...+.......
T Consensus 88 p------Dv~e--I--------d~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ 150 (624)
T PRK14959 88 V------DVVE--I--------DGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARV 150 (624)
T ss_pred C------ceEE--E--------ecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCE
Confidence 0 0000 0 000011122221 12222 2356679999999765 56777877776544455
Q ss_pred EEEEEccc-hhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCc-hHHHHHhh
Q 048733 324 RIIVTTRH-MNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLP-LAIVAVGG 401 (887)
Q Consensus 324 ~iivTtR~-~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P-Lai~~~~~ 401 (887)
.+|++|.+ ..+..... +....+++.+++.++..+.+.+.+.... ..-..+.+..|++.++|.+ .|+..+..
T Consensus 151 ifILaTt~~~kll~TI~--SRcq~i~F~pLs~~eL~~~L~~il~~eg-----i~id~eal~lIA~~s~GdlR~Al~lLeq 223 (624)
T PRK14959 151 TFVLATTEPHKFPVTIV--SRCQHFTFTRLSEAGLEAHLTKVLGREG-----VDYDPAAVRLIARRAAGSVRDSMSLLGQ 223 (624)
T ss_pred EEEEecCChhhhhHHHH--hhhhccccCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 56555544 43332211 1226889999999999988887664322 1122567788999999965 57666655
Q ss_pred hh
Q 048733 402 LL 403 (887)
Q Consensus 402 ~l 403 (887)
++
T Consensus 224 ll 225 (624)
T PRK14959 224 VL 225 (624)
T ss_pred HH
Confidence 44
No 118
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00041 Score=78.02 Aligned_cols=192 Identities=16% Similarity=0.098 Sum_probs=105.5
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCc--cCC-CceeEEEEeCCCCCHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGL--KTH-FSCRAWVTVGKEYNKNDLLRTIIK 247 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~-F~~~~wv~v~~~~~~~~~~~~i~~ 247 (887)
..++|.+..+..+.+++..+. -.+.+.++|+.|+||||+|+.++....- ... ..|.. ..-...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~----------c~nc~~--- 81 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK----------CENCVE--- 81 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc----------cHHHHH---
Confidence 468899999999999998753 2356778999999999999998774110 000 00100 000000
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-----CCCceEEEEeccCCh--hHHHHHHHhcCCCC
Q 048733 248 EFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-----KDKSYMVVLDDVWKI--DFWRDVEHALLDNK 320 (887)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~ 320 (887)
+..... ++.. . . . .......+++ +.+.+.+ .+++-++|+|+++.. +..+.+...+....
T Consensus 82 -i~~g~~--~d~~-e-i----d----aas~~gvd~i-r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp 147 (486)
T PRK14953 82 -IDKGSF--PDLI-E-I----D----AASNRGIDDI-RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPP 147 (486)
T ss_pred -HhcCCC--CcEE-E-E----e----CccCCCHHHH-HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCC
Confidence 000000 0000 0 0 0 0000111211 1222222 345679999999755 46777777776555
Q ss_pred CCcEEEEEc-cchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 048733 321 KCSRIIVTT-RHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIV 397 (887)
Q Consensus 321 ~gs~iivTt-R~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 397 (887)
....+|++| +...+..... +....+.+.+++.++....+.+.+-..+ ..-..+....|++.++|.+-.+.
T Consensus 148 ~~~v~Il~tt~~~kl~~tI~--SRc~~i~f~~ls~~el~~~L~~i~k~eg-----i~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 148 PRTIFILCTTEYDKIPPTIL--SRCQRFIFSKPTKEQIKEYLKRICNEEK-----IEYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred CCeEEEEEECCHHHHHHHHH--HhceEEEcCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 455555544 4333332211 1126889999999999888887653322 11224666778888988765443
No 119
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00021 Score=82.19 Aligned_cols=204 Identities=14% Similarity=0.086 Sum_probs=111.5
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEE-eCCCCCHHHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT-VGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-v~~~~~~~~~~~~i~~~l 249 (887)
..++|.+..+..|..++..+. -...+.++|+.|+||||+|+.+++...-...+..-.|-. +...+..-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 478999999999999887653 234588999999999999998887522111111001110 001111111111111100
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH----hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCc
Q 048733 250 HRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH----LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCS 323 (887)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 323 (887)
..+. ...+ .......+++...+... ..+.+-++|+|+++.. ...+.+...+......+
T Consensus 95 ~~n~--------~~~d--------~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~t 158 (620)
T PRK14954 95 SLNI--------SEFD--------AASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHA 158 (620)
T ss_pred CCCe--------EEec--------ccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCe
Confidence 0000 0000 00111233443332222 2345568899999765 46777888887655556
Q ss_pred EEEEEc-cchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCch-HHHH
Q 048733 324 RIIVTT-RHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPL-AIVA 398 (887)
Q Consensus 324 ~iivTt-R~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~ 398 (887)
.+|++| +...+..... .....+++.+++.++....+.+.+-..+ ..-..+.+..|++.++|..- |+..
T Consensus 159 v~IL~t~~~~kLl~TI~--SRc~~vef~~l~~~ei~~~L~~i~~~eg-----i~I~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 159 IFIFATTELHKIPATIA--SRCQRFNFKRIPLDEIQSQLQMICRAEG-----IQIDADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred EEEEEeCChhhhhHHHH--hhceEEecCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 655544 4433332222 2237899999999998888877553221 11125677889999999554 4443
No 120
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.95 E-value=0.00014 Score=75.32 Aligned_cols=173 Identities=18% Similarity=0.241 Sum_probs=107.7
Q ss_pred cCccccchhcHHHHHHHHhcCCC-CcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNGRS-KRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKE 248 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 248 (887)
++.+.+|+.++..+..++.+.+. -.+.|.|.|..|.|||.+.+.+.+.. .. ..+|+++-+.++...++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHHH
Confidence 45788999999999999988765 34566899999999999999999864 22 25899999999999999999998
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCcccccc--CCHHHHHHHHHH--HhC--CCceEEEEeccCChhHHHHHH-Hh---cC-
Q 048733 249 FHRLSKHGRDGPDRHAEGPLLPTPEEIHN--MEETDLITTLRD--HLK--DKSYMVVLDDVWKIDFWRDVE-HA---LL- 317 (887)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~--~L~--~kr~LlVlDdv~~~~~~~~l~-~~---l~- 317 (887)
.+...+. +..... ......+..+.+ ... ++.++||||+++...+.+.+. .. +.
T Consensus 80 ~~~~d~d----------------g~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~e 143 (438)
T KOG2543|consen 80 SQLADKD----------------GDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYE 143 (438)
T ss_pred hccCCCc----------------hhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHH
Confidence 8522110 000011 122333344443 222 458999999997654333221 11 11
Q ss_pred -CCCCCcEEEEEccchhHHhhh--ccCCCcceeecCCCChhhHHHHHHHh
Q 048733 318 -DNKKCSRIIVTTRHMNVAKFC--KLSSSVRIHELETLPPDEAWKLFCRK 364 (887)
Q Consensus 318 -~~~~gs~iivTtR~~~v~~~~--~~~~~~~~~~l~~L~~~e~~~lf~~~ 364 (887)
...+.. +|+++-...-.... .......++..+.-+.+|...++.+.
T Consensus 144 l~~~~~i-~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 144 LLNEPTI-VIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HhCCCce-EEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 122233 34443332222221 12223356778888888888888664
No 121
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00026 Score=81.76 Aligned_cols=194 Identities=18% Similarity=0.135 Sum_probs=107.8
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
..++|.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++..--.... ....+....... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~---------~~~~pC~~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKT---------DLLEPCQECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccC---------CCCCchhHHHHh---hc
Confidence 468999999999999988753 24567799999999999999998741110000 000000000000 00
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHH---HHHHHHHH-hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETD---LITTLRDH-LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSR 324 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 324 (887)
... +. .+. ........++ +++.+... ..+++-++|+|++... ..+..+...+-.......
T Consensus 85 -~~~---Dv----iei------daasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~ti 150 (725)
T PRK07133 85 -NSL---DI----IEM------DAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVI 150 (725)
T ss_pred -CCC---cE----EEE------eccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceE
Confidence 000 00 000 0000112222 22222211 1355669999999755 467788777765544555
Q ss_pred EE-EEccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCch-HHHH
Q 048733 325 II-VTTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPL-AIVA 398 (887)
Q Consensus 325 ii-vTtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~ 398 (887)
+| +|++...+..... +....+++.+++.++..+.+...+-..+ .....+.+..|++.++|.+- |+..
T Consensus 151 fILaTte~~KLl~TI~--SRcq~ieF~~L~~eeI~~~L~~il~keg-----I~id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 151 FILATTEVHKIPLTIL--SRVQRFNFRRISEDEIVSRLEFILEKEN-----ISYEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred EEEEcCChhhhhHHHH--hhceeEEccCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 55 4554444432221 2227899999999999988887653221 11124567789999998764 4443
No 122
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00027 Score=78.91 Aligned_cols=196 Identities=15% Similarity=0.147 Sum_probs=106.1
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCC-ceeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF-SCRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
++++|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+++...-...- +... +......+.+
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~-------c~~c~~C~~i---- 84 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEP-------CNQCASCKEI---- 84 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCC-------CcccHHHHHH----
Confidence 478999999999999987653 23567899999999999999887742111000 0000 0000000000
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-----CCCceEEEEeccCCh--hHHHHHHHhcCCCCCC
Q 048733 250 HRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-----KDKSYMVVLDDVWKI--DFWRDVEHALLDNKKC 322 (887)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~g 322 (887)
..... .+- .... .......+++.. +.+.+ .+.+-++|+|+++.. +..+.+...+......
T Consensus 85 ~~~~~--~d~--~~i~--------g~~~~gid~ir~-i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 85 SSGTS--LDV--LEID--------GASHRGIEDIRQ-INETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred hcCCC--Cce--EEee--------ccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 00000 000 0000 000011122211 11111 256678999999654 4566777777665556
Q ss_pred cEEEEEccc-hhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCch-HHHH
Q 048733 323 SRIIVTTRH-MNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPL-AIVA 398 (887)
Q Consensus 323 s~iivTtR~-~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~ 398 (887)
..+|++|.. ..+..... +....++++++++++....+.+.+-..+ ..-..+.+..|++.++|.+- |+..
T Consensus 152 ~~~Il~t~~~~kl~~tI~--sRc~~v~f~~l~~~el~~~L~~~~~~eg-----~~i~~~al~~L~~~s~gdlr~a~~~ 222 (451)
T PRK06305 152 VKFFLATTEIHKIPGTIL--SRCQKMHLKRIPEETIIDKLALIAKQEG-----IETSREALLPIARAAQGSLRDAESL 222 (451)
T ss_pred ceEEEEeCChHhcchHHH--HhceEEeCCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 666666533 22222111 1227899999999999888887653221 11225677889999998664 4333
No 123
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.93 E-value=2.3e-05 Score=83.35 Aligned_cols=55 Identities=22% Similarity=0.177 Sum_probs=45.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCC--CCHHHHHHHHHHHH
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE--YNKNDLLRTIIKEF 249 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~i~~~l 249 (887)
...++|+|++|+|||||++.+++... ..+|+..+||.+.+. .++.++++.+...+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~V 224 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEV 224 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceE
Confidence 45789999999999999999999633 337999999999866 78889888886543
No 124
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.92 E-value=0.00084 Score=75.83 Aligned_cols=180 Identities=13% Similarity=0.120 Sum_probs=101.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCC--ceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF--SCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPT 271 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 271 (887)
..-+.|+|++|+|||+|++.+++. ....+ ..+++++. .++..++...+...
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------------------- 200 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN------------------- 200 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-------------------
Confidence 456889999999999999999995 33332 23445543 33444444444221
Q ss_pred ccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh---hHH-HHHHHhcCC-CCCCcEEEEEccchh--H-------Hhh
Q 048733 272 PEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI---DFW-RDVEHALLD-NKKCSRIIVTTRHMN--V-------AKF 337 (887)
Q Consensus 272 ~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~iivTtR~~~--v-------~~~ 337 (887)
..+ .+.+.++ +.-+|||||+... +.+ +.+...+.. ...|..||+|+.... + .+.
T Consensus 201 -------~~~----~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SR 268 (450)
T PRK00149 201 -------TME----EFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSR 268 (450)
T ss_pred -------cHH----HHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhH
Confidence 112 2333333 3448999999643 212 223222211 112445888776532 1 112
Q ss_pred hccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHH----HHhhh--hcCCCCCHH
Q 048733 338 CKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIV----AVGGL--LSTKNRIVS 411 (887)
Q Consensus 338 ~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~----~~~~~--l~~~~~~~~ 411 (887)
+.. ...+++++.+.++-.+++.+.+-... ..-.+++...|++.+.|..-.+. .+..+ +..+.-+..
T Consensus 269 l~~---gl~v~i~~pd~~~r~~il~~~~~~~~-----~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~ 340 (450)
T PRK00149 269 FEW---GLTVDIEPPDLETRIAILKKKAEEEG-----IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLE 340 (450)
T ss_pred hcC---CeeEEecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHH
Confidence 211 25789999999999999999874321 11225678888888888765333 22221 223334566
Q ss_pred HHHHHHHHh
Q 048733 412 EWKKLFDRL 420 (887)
Q Consensus 412 ~w~~~~~~~ 420 (887)
..+.++...
T Consensus 341 ~~~~~l~~~ 349 (450)
T PRK00149 341 LAKEALKDL 349 (450)
T ss_pred HHHHHHHHh
Confidence 666666654
No 125
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.91 E-value=0.00016 Score=75.13 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=81.5
Q ss_pred ccccchhcHHHHHHHHhc----------C---CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCH
Q 048733 172 EVVGIESIKDKLIDLMLN----------G---RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNK 238 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~----------~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (887)
.++|.+..+++|.+.... + .+....+.++|++|+||||+|+.+++.....+.-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 478988777766543211 1 22345678999999999999999987311001111112233221
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh----------hH
Q 048733 239 NDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI----------DF 308 (887)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~----------~~ 308 (887)
.++. ....+ .....+.+.+... ..-+|++|++... +.
T Consensus 83 ~~l~----~~~~g--------------------------~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~ 129 (261)
T TIGR02881 83 ADLV----GEYIG--------------------------HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEA 129 (261)
T ss_pred HHhh----hhhcc--------------------------chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHH
Confidence 1111 11000 0011222222222 2348999999752 23
Q ss_pred HHHHHHhcCCCCCCcEEEEEccchhHHhhhc----cCCC-cceeecCCCChhhHHHHHHHhhc
Q 048733 309 WRDVEHALLDNKKCSRIIVTTRHMNVAKFCK----LSSS-VRIHELETLPPDEAWKLFCRKAF 366 (887)
Q Consensus 309 ~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~----~~~~-~~~~~l~~L~~~e~~~lf~~~~~ 366 (887)
.+.+...+........+|+++...+...... .... ...+.+++++.++-.+++.+.+.
T Consensus 130 i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 130 IDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred HHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4445555544444445566654433211000 0011 14688999999999999987764
No 126
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.90 E-value=0.00091 Score=74.57 Aligned_cols=207 Identities=13% Similarity=0.084 Sum_probs=107.7
Q ss_pred ccccchhcH-HHHHHHHhcC-CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 172 EVVGIESIK-DKLIDLMLNG-RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 172 ~~vGr~~~~-~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
.++|.+... ......+... ......+.|+|+.|+|||.|++.+++.......-..+++++ ..++..++...+
T Consensus 112 fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~ 185 (405)
T TIGR00362 112 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNAL 185 (405)
T ss_pred cccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHH
Confidence 356755442 2222223222 22245688999999999999999998522111112344554 334444555444
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh---hHHH-HHHHhcCC-CCCCcE
Q 048733 250 HRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI---DFWR-DVEHALLD-NKKCSR 324 (887)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~~-~l~~~l~~-~~~gs~ 324 (887)
... ..+. +.+.+++ .-+|||||+... +.+. .+...+.. ...|..
T Consensus 186 ~~~--------------------------~~~~----~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~ 234 (405)
T TIGR00362 186 RNN--------------------------KMEE----FKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQ 234 (405)
T ss_pred HcC--------------------------CHHH----HHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCC
Confidence 321 1122 2333322 348999999643 1222 23222221 122456
Q ss_pred EEEEccchh-HHhhh-----ccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 048733 325 IIVTTRHMN-VAKFC-----KLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVA 398 (887)
Q Consensus 325 iivTtR~~~-v~~~~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 398 (887)
+|+|+.... ....+ +.......+.+++.+.++-..++.+.+-... ..-.+++...|++.+.|..-.+.-
T Consensus 235 iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~-----~~l~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 235 IVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG-----LELPDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred EEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHhcCCCHHHHHH
Confidence 788776421 11111 1111114789999999999999998874432 111257778888888887654332
Q ss_pred ----Hhhh--hcCCCCCHHHHHHHHHHh
Q 048733 399 ----VGGL--LSTKNRIVSEWKKLFDRL 420 (887)
Q Consensus 399 ----~~~~--l~~~~~~~~~w~~~~~~~ 420 (887)
+..+ +..+.-+....+.++...
T Consensus 310 ~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 310 ALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 2211 122233455566665543
No 127
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00044 Score=80.08 Aligned_cols=174 Identities=16% Similarity=0.159 Sum_probs=108.2
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCc---------------------cCCCceeEE
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGL---------------------KTHFSCRAW 229 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~~~~w 229 (887)
+.++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...- ..+|+. ..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ 94 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HE 94 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EE
Confidence 478999999999999988753 2356889999999999999988774210 011221 11
Q ss_pred EEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH----hCCCceEEEEeccCC
Q 048733 230 VTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH----LKDKSYMVVLDDVWK 305 (887)
Q Consensus 230 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~ 305 (887)
+...... ..+++...+.+. ..+++=++|+|++..
T Consensus 95 ld~~~~~------------------------------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~ 132 (614)
T PRK14971 95 LDAASNN------------------------------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHM 132 (614)
T ss_pred ecccccC------------------------------------------CHHHHHHHHHHHhhCcccCCcEEEEEECccc
Confidence 1111111 122222222111 123455889999975
Q ss_pred h--hHHHHHHHhcCCCCCCcEEEE-EccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHH
Q 048733 306 I--DFWRDVEHALLDNKKCSRIIV-TTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELS 382 (887)
Q Consensus 306 ~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~ 382 (887)
. +.++.+...+......+.+|+ |++...+..... +....+++.+++.++....+.+.+-..+ ..-..+.+
T Consensus 133 Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~--SRc~iv~f~~ls~~ei~~~L~~ia~~eg-----i~i~~~al 205 (614)
T PRK14971 133 LSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTIL--SRCQIFDFNRIQVADIVNHLQYVASKEG-----ITAEPEAL 205 (614)
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHH--hhhheeecCCCCHHHHHHHHHHHHHHcC-----CCCCHHHH
Confidence 5 568888888876655666655 444444433222 2227899999999999988887653322 11124567
Q ss_pred HHHHHHhCCCchH
Q 048733 383 QDILAKCGGLPLA 395 (887)
Q Consensus 383 ~~I~~~c~G~PLa 395 (887)
..|++.++|..--
T Consensus 206 ~~La~~s~gdlr~ 218 (614)
T PRK14971 206 NVIAQKADGGMRD 218 (614)
T ss_pred HHHHHHcCCCHHH
Confidence 8899999986643
No 128
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00052 Score=73.14 Aligned_cols=96 Identities=9% Similarity=0.109 Sum_probs=65.1
Q ss_pred CCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEEEccchhH-HhhhccCCCcceeecCCCChhhHHHHHHHhhcCCC
Q 048733 293 DKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIVTTRHMNV-AKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPS 369 (887)
Q Consensus 293 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 369 (887)
+++-++|+|+++.. +..+.+...+-....++.+|++|.+... .... .+....+.+.+++.+++.+.+.... +.
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI--~SRc~~~~~~~~~~~~~~~~L~~~~-~~- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTI--KSRCQQQACPLPSNEESLQWLQQAL-PE- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHH--HhhceeeeCCCcCHHHHHHHHHHhc-cc-
Confidence 34456678999765 5778888888766567777777776533 2221 1223789999999999999887753 11
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 048733 370 SGGCCPSELKELSQDILAKCGGLPLAIVAV 399 (887)
Q Consensus 370 ~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 399 (887)
...+.+..++..++|.|+.+..+
T Consensus 181 -------~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 -------SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -------CChHHHHHHHHHcCCCHHHHHHH
Confidence 01344567789999999865544
No 129
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.86 E-value=0.00015 Score=87.29 Aligned_cols=45 Identities=31% Similarity=0.510 Sum_probs=38.3
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+.++||+.++.++++.|.... ..-+.++|++|+||||+|+.+++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHH
Confidence 478999999999999887754 234569999999999999999884
No 130
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.83 E-value=1.2e-05 Score=62.55 Aligned_cols=57 Identities=28% Similarity=0.417 Sum_probs=43.8
Q ss_pred ceeEEEEecCCCCCCCcc-ccccccccceeecCCCceeeecCccccccch-hhhcccccCeeeeccc
Q 048733 598 KLMKVLDLEDSPINYLPE-GVGNLFNLHLLNARNTKILDLAHTFVSELPE-EIRNLKKLRSLIVFHY 662 (887)
Q Consensus 598 ~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~-~i~~l~~L~~L~l~~~ 662 (887)
++|++|++++|.+..+|. .+..+++|++|++++| .+..+|+ .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N--------~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN--------NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS--------SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC--------ccCccCHHHHcCCCCCCEEeCcCC
Confidence 457888888888888874 5678888888887765 4677765 4568888888888876
No 131
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=2.4e-05 Score=77.69 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=98.0
Q ss_pred HHHhh-ccccccceeEEecc-CChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc---CCCCh
Q 048733 707 LKELM-MLRQLNMLSIRRQN-GNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM---KKLPD 781 (887)
Q Consensus 707 ~~~l~-~l~~L~~L~l~~~~-~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~---~~lp~ 781 (887)
...++ .++.++.|++.+|. .....+...+.+++.|+.|++++|..... +.+++.+..+|+.|-|.|.. ....+
T Consensus 63 ~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--I~~lp~p~~nl~~lVLNgT~L~w~~~~s 140 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD--IKSLPLPLKNLRVLVLNGTGLSWTQSTS 140 (418)
T ss_pred HHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc--cccCcccccceEEEEEcCCCCChhhhhh
Confidence 33443 56778888888743 34566778888999999999999876654 34554344599999998853 34555
Q ss_pred hhhcCCCcceeEEEecccCCcC--------cC------------------------cCcccceeeeCcCCCceeEEE--c
Q 048733 782 WILKLKNLIGSRLILSGLTEDP--------IS------------------------WFPKLRKLVLLNFEAVKSVII--E 827 (887)
Q Consensus 782 ~~~~l~~L~~L~L~~~~l~~~~--------~~------------------------~~~~L~~L~l~~~~~l~~~~~--~ 827 (887)
.+..+|.++.|+++.|.+.+.. .+ -||++..+.+..|+ ++.... .
T Consensus 141 ~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~ 219 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKG 219 (418)
T ss_pred hhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhccc
Confidence 5667888888888887433211 11 57777777766664 222211 2
Q ss_pred CCCccCccEEEEccCCCCCccc--cccccCCCCCEEEEEech
Q 048733 828 KGAMPDIRELWIGPCPLLMEIP--IGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 828 ~~~lp~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~c~ 867 (887)
...+|.+-.|+++.+. +..+. ..+..+|+|.-|.+.++|
T Consensus 220 se~~p~~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred CCCCCcchhhhhcccc-cccHHHHHHHcCCchhheeeccCCc
Confidence 2345555555655544 33221 244566777777777777
No 132
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00082 Score=77.87 Aligned_cols=198 Identities=16% Similarity=0.124 Sum_probs=110.9
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
..++|.+..+..|..++..+. -...+.++|+.|+||||+|+.+++...-...... ....+...+..+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHhcCCC
Confidence 468899999999999988754 2346789999999999999999885211111000 0011111222222222111
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH----hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH----LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSR 324 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 324 (887)
.+.. . . ........+++.+.+... ..+++-++|+|+++.. +.++.+...+......+.
T Consensus 90 ~D~~------e---------i-~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tv 153 (620)
T PRK14948 90 LDVI------E---------I-DAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVV 153 (620)
T ss_pred ccEE------E---------E-eccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeE
Confidence 1000 0 0 000112233333333221 1245568999999765 567888888776555565
Q ss_pred EEEEccc-hhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 048733 325 IIVTTRH-MNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIV 397 (887)
Q Consensus 325 iivTtR~-~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 397 (887)
+|++|.+ ..+..... +....+++.+++.++....+.+.+...+. .-..+....|++.++|.+..+.
T Consensus 154 fIL~t~~~~~llpTIr--SRc~~~~f~~l~~~ei~~~L~~ia~kegi-----~is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 154 FVLATTDPQRVLPTII--SRCQRFDFRRIPLEAMVQHLSEIAEKESI-----EIEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred EEEEeCChhhhhHHHH--hheeEEEecCCCHHHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHcCCCHHHHH
Confidence 5554443 33322211 12267888999999888877766533211 1113567889999999876444
No 133
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.79 E-value=1.2e-05 Score=89.81 Aligned_cols=152 Identities=28% Similarity=0.299 Sum_probs=100.0
Q ss_pred CCCceeEEEeecCCCCCccccccccCCCc-eeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhh
Q 048733 570 KDSKVRSVILFNVDKLPDSFVKSCIANFK-LMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEI 648 (887)
Q Consensus 570 ~~~~lrsL~~~~~~~~~~~~~~~~~~~~~-~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i 648 (887)
....+..|.+.++... -++.....+. +|+.|+++++.+..+|..++.+++|+.|++++| .+..+|...
T Consensus 114 ~~~~l~~L~l~~n~i~---~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N--------~l~~l~~~~ 182 (394)
T COG4886 114 ELTNLTSLDLDNNNIT---DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN--------DLSDLPKLL 182 (394)
T ss_pred cccceeEEecCCcccc---cCccccccchhhcccccccccchhhhhhhhhccccccccccCCc--------hhhhhhhhh
Confidence 3467788877776652 2334455563 899999999999999988999999999998875 588999888
Q ss_pred hcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCCh
Q 048733 649 RNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNG 728 (887)
Q Consensus 649 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 728 (887)
..+++|+.|+++++ ....+|..++.+..|++|. ++.+. ....+..+..++++..|.+..+. .
T Consensus 183 ~~~~~L~~L~ls~N-----------~i~~l~~~~~~~~~L~~l~----~~~N~-~~~~~~~~~~~~~l~~l~l~~n~--~ 244 (394)
T COG4886 183 SNLSNLNNLDLSGN-----------KISDLPPEIELLSALEELD----LSNNS-IIELLSSLSNLKNLSGLELSNNK--L 244 (394)
T ss_pred hhhhhhhheeccCC-----------ccccCchhhhhhhhhhhhh----hcCCc-ceecchhhhhcccccccccCCce--e
Confidence 89999999999998 5667777666666777776 33332 11223334444445444433221 1
Q ss_pred hHHHHHHhcccCCcEEEEeecC
Q 048733 729 RDLCALIANLENVETLGVLMKS 750 (887)
Q Consensus 729 ~~l~~~l~~~~~L~~L~l~~~~ 750 (887)
..++..+.++++++.|+++.|.
T Consensus 245 ~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 245 EDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred eeccchhccccccceecccccc
Confidence 1113344444555555555443
No 134
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.0011 Score=75.96 Aligned_cols=196 Identities=12% Similarity=0.093 Sum_probs=110.5
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
.+++|-+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++..--...... ..+..-...+.|..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i~~--- 84 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSIDN--- 84 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHHHc---
Confidence 478999999999999998754 3457889999999999999999885211111000 00000000111110
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHH---H-hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRD---H-LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSR 324 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 324 (887)
... .+- .... .......+++.+.... . ..+++-++|+|++... ..++.+...+......+.
T Consensus 85 -~~~--~dv--~~id--------gas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~v 151 (563)
T PRK06647 85 -DNS--LDV--IEID--------GASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIV 151 (563)
T ss_pred -CCC--CCe--EEec--------CcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEE
Confidence 000 000 0000 0001223333322211 1 1355668999999655 467788888776555666
Q ss_pred EEEEccc-hhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 048733 325 IIVTTRH-MNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIV 397 (887)
Q Consensus 325 iivTtR~-~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 397 (887)
+|++|.. ..+..... +....++..+++.++..+.+.+.+...+ ..-..+....|++.++|.+-.+.
T Consensus 152 fI~~tte~~kL~~tI~--SRc~~~~f~~l~~~el~~~L~~i~~~eg-----i~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 152 FIFATTEVHKLPATIK--SRCQHFNFRLLSLEKIYNMLKKVCLEDQ-----IKYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred EEEecCChHHhHHHHH--HhceEEEecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 6665543 33322221 1226789999999999888887664322 11225677788999999775433
No 135
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00053 Score=79.23 Aligned_cols=197 Identities=16% Similarity=0.165 Sum_probs=108.4
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
++++|.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++...-..... ...+........|..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~~--- 84 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEITE--- 84 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHhc---
Confidence 478999999999999987753 235678999999999999999887421111100 001111111111111
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-----CCCceEEEEeccCCh--hHHHHHHHhcCCCCCCc
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-----KDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCS 323 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 323 (887)
... .+... .. .......+++. .+.+.+ .+++-++|+|+++.. ...+.+...+-.....+
T Consensus 85 -g~~--~d~~e--id--------~~s~~~v~~ir-~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~ 150 (576)
T PRK14965 85 -GRS--VDVFE--ID--------GASNTGVDDIR-ELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHV 150 (576)
T ss_pred -CCC--CCeee--ee--------ccCccCHHHHH-HHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCe
Confidence 000 00000 00 00011122221 122222 234558999999765 46777887776655556
Q ss_pred EEEE-EccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCc-hHHHHH
Q 048733 324 RIIV-TTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLP-LAIVAV 399 (887)
Q Consensus 324 ~iiv-TtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P-Lai~~~ 399 (887)
.+|+ ||....+..... +....+++.+++.++....+...+-..+ ..-..+....|++.++|.. .|+..+
T Consensus 151 ~fIl~t~~~~kl~~tI~--SRc~~~~f~~l~~~~i~~~L~~i~~~eg-----i~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 151 KFIFATTEPHKVPITIL--SRCQRFDFRRIPLQKIVDRLRYIADQEG-----ISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EEEEEeCChhhhhHHHH--HhhhhhhcCCCCHHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6655 554444433222 1227888999999998888776553221 1112466778889998865 444444
No 136
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0027 Score=71.47 Aligned_cols=161 Identities=19% Similarity=0.338 Sum_probs=94.8
Q ss_pred cCccccchhcHHHHHHHHhcC----CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNG----RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTI 245 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 245 (887)
+.+-+|.++-+++|+++|.-. .-..+++++||++|+|||+|++.+++ .....|-. ++++.-.|..++-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEIR--- 393 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEIR--- 393 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHhc---
Confidence 445689999999999998753 23457999999999999999999998 35555522 3444444433221
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh------hHHHHHHHhcCC-
Q 048733 246 IKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI------DFWRDVEHALLD- 318 (887)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------~~~~~l~~~l~~- 318 (887)
+.. +.=- +..| ..+++.+++ .+.++-+++||.++.. +.-..++..|.+
T Consensus 394 -----GHR--------RTYI---GamP--------GrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPE 448 (782)
T COG0466 394 -----GHR--------RTYI---GAMP--------GKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPE 448 (782)
T ss_pred -----ccc--------cccc---ccCC--------hHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHh
Confidence 100 0000 0001 223333332 2457789999999754 223344444421
Q ss_pred CCC------------CcEE-EEEccch-h-HHh-hhccCCCcceeecCCCChhhHHHHHHHhhc
Q 048733 319 NKK------------CSRI-IVTTRHM-N-VAK-FCKLSSSVRIHELETLPPDEAWKLFCRKAF 366 (887)
Q Consensus 319 ~~~------------gs~i-ivTtR~~-~-v~~-~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 366 (887)
.++ =|.| .|||-|. + +.. ... ...+|++.+-+++|-.++-+++..
T Consensus 449 QN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD---RMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 449 QNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD---RMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred hcCchhhccccCccchhheEEEeecCccccCChHHhc---ceeeeeecCCChHHHHHHHHHhcc
Confidence 110 1333 5566542 1 111 121 238999999999998888887763
No 137
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.76 E-value=0.00033 Score=70.52 Aligned_cols=178 Identities=18% Similarity=0.197 Sum_probs=108.2
Q ss_pred cCccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEE-EEeCCCCCHHHHHHHHHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAW-VTVGKEYNKNDLLRTIIKE 248 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~v~~~~~~~~~~~~i~~~ 248 (887)
-++++|.+..++-|.+.+... ...+...+|++|.|||+-|..++...--..-|.+++. .++|...... +.+.=++
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~Kik- 110 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREKIK- 110 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhhhc-
Confidence 356899999999999888873 3678889999999999999888774222345555442 2333322111 0000000
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh--CCCc-eEEEEeccCCh--hHHHHHHHhcCCCCCCc
Q 048733 249 FHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL--KDKS-YMVVLDDVWKI--DFWRDVEHALLDNKKCS 323 (887)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 323 (887)
+...+........ .-++ -.+|||+++.+ +.|..+...+......+
T Consensus 111 ------------------------------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~t 160 (346)
T KOG0989|consen 111 ------------------------------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTT 160 (346)
T ss_pred ------------------------------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccce
Confidence 0000000000000 0123 47889999876 68999999888766666
Q ss_pred EEEEEccc-h----hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCC
Q 048733 324 RIIVTTRH-M----NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGL 392 (887)
Q Consensus 324 ~iivTtR~-~----~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 392 (887)
+.|+-+-. . .+.+.| .-+.-++|.+++..+-+...+-..+ .+-..+..+.|++.++|-
T Consensus 161 rFiLIcnylsrii~pi~SRC------~KfrFk~L~d~~iv~rL~~Ia~~E~-----v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 161 RFILICNYLSRIIRPLVSRC------QKFRFKKLKDEDIVDRLEKIASKEG-----VDIDDDALKLIAKISDGD 223 (346)
T ss_pred EEEEEcCChhhCChHHHhhH------HHhcCCCcchHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHcCCc
Confidence 66544333 2 233333 6778899999988888877764332 122356678888888873
No 138
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.75 E-value=0.00023 Score=85.10 Aligned_cols=45 Identities=29% Similarity=0.464 Sum_probs=38.1
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
++++||+++++++++.|.... ..-+.++|++|+|||++|+.+++.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999887654 234669999999999999999885
No 139
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.75 E-value=0.0029 Score=76.25 Aligned_cols=48 Identities=25% Similarity=0.621 Sum_probs=38.4
Q ss_pred cCccccchhcHHHHHHHHhc----CCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 170 DDEVVGIESIKDKLIDLMLN----GRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...++|.+..+++|.+++.. +.....++.++|++|+|||++|+.+++.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34588999999999887653 2223458999999999999999999984
No 140
>PRK06620 hypothetical protein; Validated
Probab=97.74 E-value=0.0011 Score=66.17 Aligned_cols=88 Identities=9% Similarity=-0.023 Sum_probs=51.3
Q ss_pred eEEEEeccCChh--HHHHHHHhcCCCCCCcEEEEEccchhH-------HhhhccCCCcceeecCCCChhhHHHHHHHhhc
Q 048733 296 YMVVLDDVWKID--FWRDVEHALLDNKKCSRIIVTTRHMNV-------AKFCKLSSSVRIHELETLPPDEAWKLFCRKAF 366 (887)
Q Consensus 296 ~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~v-------~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 366 (887)
-+|++||+.... ..-.+...+. ..|..||+|++.... .+.+.+. ..+++++++.++-..++.+.+.
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~g---l~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSV---LSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCC---ceEeeCCCCHHHHHHHHHHHHH
Confidence 578899996322 2222222222 235689998875432 2222221 5899999999998888877763
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCCCc
Q 048733 367 GPSSGGCCPSELKELSQDILAKCGGLP 393 (887)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~I~~~c~G~P 393 (887)
... ..-.+++..-|++.+.|.-
T Consensus 162 ~~~-----l~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 162 ISS-----VTISRQIIDFLLVNLPREY 183 (214)
T ss_pred HcC-----CCCCHHHHHHHHHHccCCH
Confidence 211 1122566677777776644
No 141
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.74 E-value=0.001 Score=74.28 Aligned_cols=185 Identities=12% Similarity=0.071 Sum_probs=100.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCc-eeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFS-CRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTP 272 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 272 (887)
..-+.|+|++|+|||.|++.+++... +.+.. .++|++. .+++.++...+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~~------~~f~~~~~~~~~~~-------------------- 182 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITS------EKFLNDLVDSMKEG-------------------- 182 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHhcc--------------------
Confidence 34589999999999999999998522 22222 3456553 45555665554321
Q ss_pred cccccCCHHHHHHHHHHHhCCCceEEEEeccCCh---hHH-HHHHHhcCC-CCCCcEEEEEcc-chhHHhhh----c-cC
Q 048733 273 EEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI---DFW-RDVEHALLD-NKKCSRIIVTTR-HMNVAKFC----K-LS 341 (887)
Q Consensus 273 ~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~iivTtR-~~~v~~~~----~-~~ 341 (887)
..+ .+++..+.+.-+|++||+... ..+ ..+...+.. ...|..||+||. .+.-...+ . ..
T Consensus 183 ------~~~----~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~ 252 (440)
T PRK14088 183 ------KLN----EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRF 252 (440)
T ss_pred ------cHH----HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHH
Confidence 112 233333345668999999643 222 223222211 112346888875 33221111 0 00
Q ss_pred CCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHh------hhhcCCCCCHHHHHH
Q 048733 342 SSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVG------GLLSTKNRIVSEWKK 415 (887)
Q Consensus 342 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~------~~l~~~~~~~~~w~~ 415 (887)
.....+.+++.+.+.-.+++.+.+..... .. .+++...|++.+.|.--.+.-+- +.+..++.+...-+.
T Consensus 253 ~~gl~v~i~~pd~e~r~~IL~~~~~~~~~--~l---~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~ 327 (440)
T PRK14088 253 QMGLVAKLEPPDEETRKKIARKMLEIEHG--EL---PEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAIL 327 (440)
T ss_pred hcCceEeeCCCCHHHHHHHHHHHHHhcCC--CC---CHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 11157899999999999999888743211 11 25677778888777543332211 222233345555556
Q ss_pred HHHHh
Q 048733 416 LFDRL 420 (887)
Q Consensus 416 ~~~~~ 420 (887)
++..+
T Consensus 328 ~L~~~ 332 (440)
T PRK14088 328 LLKDF 332 (440)
T ss_pred HHHHH
Confidence 65544
No 142
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.71 E-value=0.00052 Score=76.71 Aligned_cols=164 Identities=13% Similarity=0.123 Sum_probs=88.7
Q ss_pred CccccchhcHHHHHHHHhc-----------CCCCcEEEEEEccCCCCHHHHHHHHhcccCcc---CCCceeEEEEeCCCC
Q 048733 171 DEVVGIESIKDKLIDLMLN-----------GRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLK---THFSCRAWVTVGKEY 236 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~v~~~~ 236 (887)
..+.|.+..++++.+.+.. +-...+-+.++|++|.|||++|+.+++..... ..+....++.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4578899999998887642 11234568899999999999999999952211 01122334443321
Q ss_pred CHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-CCCceEEEEeccCCh---------
Q 048733 237 NKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-KDKSYMVVLDDVWKI--------- 306 (887)
Q Consensus 237 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~--------- 306 (887)
++ +....+. .......+....+... .+++.+|+||+++..
T Consensus 261 ---eL----l~kyvGe-----------------------te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s 310 (512)
T TIGR03689 261 ---EL----LNKYVGE-----------------------TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS 310 (512)
T ss_pred ---hh----cccccch-----------------------HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc
Confidence 11 1000000 0001122233333322 357899999999743
Q ss_pred hH-----HHHHHHhcCCC--CCCcEEEEEccchhHHhh-h-ccCCCcceeecCCCChhhHHHHHHHhh
Q 048733 307 DF-----WRDVEHALLDN--KKCSRIIVTTRHMNVAKF-C-KLSSSVRIHELETLPPDEAWKLFCRKA 365 (887)
Q Consensus 307 ~~-----~~~l~~~l~~~--~~gs~iivTtR~~~v~~~-~-~~~~~~~~~~l~~L~~~e~~~lf~~~~ 365 (887)
.. ...+...+... ..+..||.||........ . ....-...+++++.+.++..++|..+.
T Consensus 311 ~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 311 SDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred chHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 11 12333333321 123445556654433221 1 111112568999999999999999876
No 143
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.00046 Score=73.40 Aligned_cols=209 Identities=14% Similarity=0.164 Sum_probs=121.3
Q ss_pred cCccccchhcHHHHHHHHhcC--CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNG--RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (887)
+..++||+.+++.+.+|+... ......+.|.|-+|.|||.+...++.+..-...=.+++.++...-.....++..|..
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHH
Confidence 567899999999999999875 234567899999999999999999986332222224466666655667788888888
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCC--ceEEEEeccCChhHH--HHHHHhcC-CCCCC
Q 048733 248 EFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDK--SYMVVLDDVWKIDFW--RDVEHALL-DNKKC 322 (887)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVlDdv~~~~~~--~~l~~~l~-~~~~g 322 (887)
.+..... ......+....+..+..+. .+|+|+|.++....- ..+...|. +.-++
T Consensus 229 ~~~q~~~---------------------s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~ 287 (529)
T KOG2227|consen 229 SLLQDLV---------------------SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPN 287 (529)
T ss_pred HHHHHhc---------------------CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCc
Confidence 7733211 1112255666777776553 589999998654210 11111111 12234
Q ss_pred cEEEE---------EccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCc
Q 048733 323 SRIIV---------TTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLP 393 (887)
Q Consensus 323 s~iiv---------TtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 393 (887)
+++|+ |-|--.-... ...-....+.-+|-+.++..++|..+.-........+..++-.+++++...|.+=
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~-~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNL-DLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhh-ccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHH
Confidence 45443 2221111111 0011226788899999999999999875433211222233333344443334444
Q ss_pred hHHHHHh
Q 048733 394 LAIVAVG 400 (887)
Q Consensus 394 Lai~~~~ 400 (887)
-|+.+.-
T Consensus 367 kaLdv~R 373 (529)
T KOG2227|consen 367 KALDVCR 373 (529)
T ss_pred HHHHHHH
Confidence 4444333
No 144
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.70 E-value=0.00091 Score=73.23 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=87.8
Q ss_pred cCccccchhcHHHHHHHHhc-----------CCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCH
Q 048733 170 DDEVVGIESIKDKLIDLMLN-----------GRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNK 238 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (887)
-.++.|.+..+++|.+.+.. +-...+-+.++|++|.|||+||+.+++. ....| +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~---- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG---- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----
Confidence 34688999988888776642 1123567889999999999999999984 33333 22211
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh------------
Q 048733 239 NDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI------------ 306 (887)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------ 306 (887)
.. +.....+ .....+.+.+.......+.+|+||+++..
T Consensus 213 s~----l~~k~~g--------------------------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d 262 (398)
T PTZ00454 213 SE----FVQKYLG--------------------------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGAD 262 (398)
T ss_pred HH----HHHHhcc--------------------------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCcc
Confidence 11 1111110 01122233333344567899999998642
Q ss_pred hH----HHHHHHhcCC--CCCCcEEEEEccchhHHhh--hccCCCcceeecCCCChhhHHHHHHHhh
Q 048733 307 DF----WRDVEHALLD--NKKCSRIIVTTRHMNVAKF--CKLSSSVRIHELETLPPDEAWKLFCRKA 365 (887)
Q Consensus 307 ~~----~~~l~~~l~~--~~~gs~iivTtR~~~v~~~--~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 365 (887)
.. +..+...+.. ...+..||.||........ .....-...++++..+.++-.++|....
T Consensus 263 ~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 263 REVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred HHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 01 1222222221 2235677888776543321 1111122578898888888888887665
No 145
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.68 E-value=3e-05 Score=60.18 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=50.5
Q ss_pred CceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCc-cccccccccceeecCCCc
Q 048733 572 SKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLP-EGVGNLFNLHLLNARNTK 632 (887)
Q Consensus 572 ~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~ 632 (887)
++|+.|.+.++.. ..+.+..|.++++|++|++++|.+..+| ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l--~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKL--TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTE--SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCC--CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 5788888888865 4566678999999999999999999886 578999999999999874
No 146
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.67 E-value=8.2e-05 Score=80.66 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=56.4
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLR 243 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 243 (887)
..+++.++..+.+...|.... .+.++|++|+|||++|+.+++.......|..+.||+++..++..+++.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~----~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK----NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC----CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 457888999999999888643 678899999999999999998654455778888999998888766653
No 147
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.002 Score=68.28 Aligned_cols=197 Identities=14% Similarity=0.108 Sum_probs=111.3
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCc-------------cCCCceeEEEEeCCCCC
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGL-------------KTHFSCRAWVTVGKEYN 237 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~v~~~~~ 237 (887)
+.++|.+..++.+...+..+. -.+...++|+.|+||+++|..+++..-- ...+....|+.-....+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 368899999999999988764 2368889999999999999887664111 11222233432110000
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-----CCCceEEEEeccCCh--hHHH
Q 048733 238 KNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-----KDKSYMVVLDDVWKI--DFWR 310 (887)
Q Consensus 238 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~ 310 (887)
-..+-.+-++..+.. .. ....+..+++ +.+.+.+ .+.+-++|+|+++.. ....
T Consensus 83 g~~~~~~~~~~~~~~----------------~~---~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaN 142 (314)
T PRK07399 83 GKLITASEAEEAGLK----------------RK---APPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAAN 142 (314)
T ss_pred ccccchhhhhhcccc----------------cc---ccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHH
Confidence 000000000000000 00 0112233333 2344444 345679999999765 4677
Q ss_pred HHHHhcCCCCCCcEEEEEccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhC
Q 048733 311 DVEHALLDNKKCSRIIVTTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCG 390 (887)
Q Consensus 311 ~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~ 390 (887)
.++..+-...+..-|++|+....+..... +....+.+.+++.++..+.+.+...... .......++..++
T Consensus 143 aLLK~LEEPp~~~fILi~~~~~~Ll~TI~--SRcq~i~f~~l~~~~~~~~L~~~~~~~~--------~~~~~~~l~~~a~ 212 (314)
T PRK07399 143 ALLKTLEEPGNGTLILIAPSPESLLPTIV--SRCQIIPFYRLSDEQLEQVLKRLGDEEI--------LNINFPELLALAQ 212 (314)
T ss_pred HHHHHHhCCCCCeEEEEECChHhCcHHHH--hhceEEecCCCCHHHHHHHHHHhhcccc--------chhHHHHHHHHcC
Confidence 78877764443433444544433333222 2238999999999999999998642111 0111357889999
Q ss_pred CCchHHHH
Q 048733 391 GLPLAIVA 398 (887)
Q Consensus 391 G~PLai~~ 398 (887)
|.|..+..
T Consensus 213 Gs~~~al~ 220 (314)
T PRK07399 213 GSPGAAIA 220 (314)
T ss_pred CCHHHHHH
Confidence 99976554
No 148
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.67 E-value=0.0044 Score=70.40 Aligned_cols=154 Identities=13% Similarity=0.166 Sum_probs=87.8
Q ss_pred EEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEE 274 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (887)
..+.|+|..|+|||.|++.+++.......-..+++++ ..+++.++...+...
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~---------------------- 366 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG---------------------- 366 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc----------------------
Confidence 4589999999999999999999522111112334544 344444544433221
Q ss_pred cccCCHHHHHHHHHHHhCCCceEEEEeccCCh---hHHHH-HHHhcCC-CCCCcEEEEEccch---------hHHhhhcc
Q 048733 275 IHNMEETDLITTLRDHLKDKSYMVVLDDVWKI---DFWRD-VEHALLD-NKKCSRIIVTTRHM---------NVAKFCKL 340 (887)
Q Consensus 275 ~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~ 340 (887)
. ...+++.+++ -=+|||||+... +.|+. +...+.. ...|..|||||+.. .+.+.+.+
T Consensus 367 ----~----~~~f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~ 437 (617)
T PRK14086 367 ----K----GDSFRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEW 437 (617)
T ss_pred ----c----HHHHHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhc
Confidence 1 1223333332 357889999644 33332 2222211 12245688888763 12222222
Q ss_pred CCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCc
Q 048733 341 SSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLP 393 (887)
Q Consensus 341 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 393 (887)
. -.+++++.+.+.-..++.+++.... ..--+++..-|++.+.+..
T Consensus 438 G---Lvv~I~~PD~EtR~aIL~kka~~r~-----l~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 438 G---LITDVQPPELETRIAILRKKAVQEQ-----LNAPPEVLEFIASRISRNI 482 (617)
T ss_pred C---ceEEcCCCCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHhccCCH
Confidence 2 6889999999999999998874432 1112566667777766553
No 149
>PRK10536 hypothetical protein; Provisional
Probab=97.66 E-value=0.00077 Score=67.66 Aligned_cols=132 Identities=11% Similarity=0.183 Sum_probs=77.4
Q ss_pred ccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEe----CCC--C---CHH---
Q 048733 172 EVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV----GKE--Y---NKN--- 239 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v----~~~--~---~~~--- 239 (887)
.+.+|......+..++...+ ++.+.|++|.|||+||..+..+.-..+.|...+-..- .+. | +..
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~----lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQ----LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred cccCCCHHHHHHHHHHhcCC----eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 45678888888888887643 8999999999999999998875322344544333311 110 1 111
Q ss_pred -HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHH-----------HHHhCCCce---EEEEeccC
Q 048733 240 -DLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTL-----------RDHLKDKSY---MVVLDDVW 304 (887)
Q Consensus 240 -~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----------~~~L~~kr~---LlVlDdv~ 304 (887)
..+..+...+.... ..+.+...+ -.+++|+.+ +||+|.+.
T Consensus 132 ~p~~~pi~D~L~~~~-------------------------~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaq 186 (262)
T PRK10536 132 APYFRPVYDVLVRRL-------------------------GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQ 186 (262)
T ss_pred HHHHHHHHHHHHHHh-------------------------ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechh
Confidence 11222222222110 001111111 136677654 99999998
Q ss_pred ChhHHHHHHHhcCCCCCCcEEEEEccchh
Q 048733 305 KIDFWRDVEHALLDNKKCSRIIVTTRHMN 333 (887)
Q Consensus 305 ~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 333 (887)
+.+. .++...+...+.+|++|+|--..+
T Consensus 187 n~~~-~~~k~~ltR~g~~sk~v~~GD~~Q 214 (262)
T PRK10536 187 NVTA-AQMKMFLTRLGENVTVIVNGDITQ 214 (262)
T ss_pred cCCH-HHHHHHHhhcCCCCEEEEeCChhh
Confidence 7765 445555566678999999876543
No 150
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.0016 Score=74.80 Aligned_cols=193 Identities=16% Similarity=0.154 Sum_probs=107.7
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
++++|.+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+.+...-...-+ ...++.-...+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 478999999999999988754 245677899999999999998876311111000 011111112222211000
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-----CCCceEEEEeccCCh--hHHHHHHHhcCCCCCCc
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-----KDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCS 323 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 323 (887)
. +-.. . . .......+++.+ +++.. .++.-++|+|+++.. ..+..+...+.......
T Consensus 88 ~------dv~e--i-------d-aas~~~vd~ir~-i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ 150 (559)
T PRK05563 88 M------DVIE--I-------D-AASNNGVDEIRD-IRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHV 150 (559)
T ss_pred C------CeEE--e-------e-ccccCCHHHHHH-HHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCe
Confidence 0 0000 0 0 001112222222 22221 345668899999765 46788887776555455
Q ss_pred EEEE-EccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchH
Q 048733 324 RIIV-TTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLA 395 (887)
Q Consensus 324 ~iiv-TtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLa 395 (887)
.+|+ ||....+..... +....++..+++.++....+...+-..+ ..-..+....|++.++|.+..
T Consensus 151 ifIlatt~~~ki~~tI~--SRc~~~~f~~~~~~ei~~~L~~i~~~eg-----i~i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 151 IFILATTEPHKIPATIL--SRCQRFDFKRISVEDIVERLKYILDKEG-----IEYEDEALRLIARAAEGGMRD 216 (559)
T ss_pred EEEEEeCChhhCcHHHH--hHheEEecCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHH
Confidence 5555 444433322211 2236788999999999888887663321 111246677888888887753
No 151
>CHL00176 ftsH cell division protein; Validated
Probab=97.63 E-value=0.00098 Score=77.29 Aligned_cols=175 Identities=14% Similarity=0.197 Sum_probs=96.2
Q ss_pred CccccchhcHHHHHHHH---hcCC-------CCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHH
Q 048733 171 DEVVGIESIKDKLIDLM---LNGR-------SKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKND 240 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L---~~~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (887)
.+++|.++.++++.+.+ .... ...+-|.++|++|+|||+||+.+++.. ... |+.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p-----~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP-----FFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----eeeccH----HH
Confidence 46788877776665543 3321 123468899999999999999998842 222 333321 11
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh------------hH
Q 048733 241 LLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI------------DF 308 (887)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------~~ 308 (887)
+ .....+ .....+...+.......+.+|+|||++.. +.
T Consensus 252 f----~~~~~g--------------------------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e 301 (638)
T CHL00176 252 F----VEMFVG--------------------------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDE 301 (638)
T ss_pred H----HHHhhh--------------------------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHH
Confidence 1 111100 01123344455555678899999999643 12
Q ss_pred HHH----HHHhcCC--CCCCcEEEEEccchhHHhh--hccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHH
Q 048733 309 WRD----VEHALLD--NKKCSRIIVTTRHMNVAKF--CKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKE 380 (887)
Q Consensus 309 ~~~----l~~~l~~--~~~gs~iivTtR~~~v~~~--~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~ 380 (887)
+.. +...+.. ...+-.||.||........ .....-...+.++..+.++-.++++.++-... .....
T Consensus 302 ~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~------~~~d~ 375 (638)
T CHL00176 302 REQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK------LSPDV 375 (638)
T ss_pred HHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc------cchhH
Confidence 222 2222221 2334556666665433221 11111125788888898888888888763311 11123
Q ss_pred HHHHHHHHhCCC
Q 048733 381 LSQDILAKCGGL 392 (887)
Q Consensus 381 ~~~~I~~~c~G~ 392 (887)
....+++.+.|.
T Consensus 376 ~l~~lA~~t~G~ 387 (638)
T CHL00176 376 SLELIARRTPGF 387 (638)
T ss_pred HHHHHHhcCCCC
Confidence 456677777773
No 152
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=2.1e-05 Score=78.07 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=57.5
Q ss_pred ccceeEEeeccCC----CChhhhcCCCcceeEEEecccCCc----CcCcCcccceeeeCcCCCceeEEE--cCCCccCcc
Q 048733 766 HLQYLSLRGNMKK----LPDWILKLKNLIGSRLILSGLTED----PISWFPKLRKLVLLNFEAVKSVII--EKGAMPDIR 835 (887)
Q Consensus 766 ~L~~L~L~~~~~~----lp~~~~~l~~L~~L~L~~~~l~~~----~~~~~~~L~~L~l~~~~~l~~~~~--~~~~lp~L~ 835 (887)
.+.+|++.+|... .-..-.-++|+..+.+..|.+... ....||.+--|.|... ++.+|.. ....||.|.
T Consensus 174 ~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~ 252 (418)
T KOG2982|consen 174 EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLV 252 (418)
T ss_pred hhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhh
Confidence 4556666555321 111112367888888888866543 2335666666655543 3445522 356788888
Q ss_pred EEEEccCCCCCcccc------ccccCCCCCEEEEE
Q 048733 836 ELWIGPCPLLMEIPI------GIDHLRNLELLTFH 864 (887)
Q Consensus 836 ~L~l~~c~~l~~lp~------~~~~l~~L~~L~l~ 864 (887)
.|.+.++|....+-. .+..+++++.|+=+
T Consensus 253 dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 253 DLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred eeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 888888886654432 35677777777544
No 153
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.58 E-value=0.00065 Score=74.84 Aligned_cols=156 Identities=16% Similarity=0.177 Sum_probs=88.7
Q ss_pred CccccchhcHHHHHHHHhcC-----------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHH
Q 048733 171 DEVVGIESIKDKLIDLMLNG-----------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKN 239 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (887)
.++.|.+..+++|.+.+.-. -...+-+.++|++|+|||++|+.+++. ....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----
Confidence 45688999999888876421 123456789999999999999999994 33343 222110
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh------------
Q 048733 240 DLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID------------ 307 (887)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~------------ 307 (887)
++ .....+ .....+...+.....+.+.+|+||+++...
T Consensus 252 eL----~~k~~G--------------------------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~ 301 (438)
T PTZ00361 252 EL----IQKYLG--------------------------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEK 301 (438)
T ss_pred hh----hhhhcc--------------------------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccH
Confidence 01 111110 011222333333334678899999975320
Q ss_pred -H---HHHHHHhcCC--CCCCcEEEEEccchhHHhhh--ccCCCcceeecCCCChhhHHHHHHHhhcC
Q 048733 308 -F---WRDVEHALLD--NKKCSRIIVTTRHMNVAKFC--KLSSSVRIHELETLPPDEAWKLFCRKAFG 367 (887)
Q Consensus 308 -~---~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~--~~~~~~~~~~l~~L~~~e~~~lf~~~~~~ 367 (887)
. ...+...+.. ...+..||.||......... ....-...+++++.+.++-.++|..++..
T Consensus 302 e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 302 EIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred HHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 0 1122222221 23356788887765443321 11112368899999999999999877643
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.57 E-value=0.00036 Score=84.50 Aligned_cols=45 Identities=29% Similarity=0.488 Sum_probs=38.1
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+.++||+++++++++.|.... ..-+.++|++|+|||++|+.++..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998654 234569999999999999998875
No 155
>PLN03150 hypothetical protein; Provisional
Probab=97.57 E-value=8.1e-05 Score=87.24 Aligned_cols=90 Identities=19% Similarity=0.356 Sum_probs=54.7
Q ss_pred eeEEEEecCCCCC-CCccccccccccceeecCCCceeeecCccc-cccchhhhcccccCeeeecccccccccccchhhhh
Q 048733 599 LMKVLDLEDSPIN-YLPEGVGNLFNLHLLNARNTKILDLAHTFV-SELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAA 676 (887)
Q Consensus 599 ~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 676 (887)
.++.|+|++|.+. .+|..+++|++|++|+|++|. + ..+|..+.++++|+.|++++|. ...
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~--------l~g~iP~~~~~l~~L~~LdLs~N~----------lsg 480 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS--------IRGNIPPSLGSITSLEVLDLSYNS----------FNG 480 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCc--------ccCcCChHHhCCCCCCEEECCCCC----------CCC
Confidence 3667777777766 567777777777777776653 3 3667777777777777777661 122
Q ss_pred hccCCccccccccccccccccCceecchHHHHHh
Q 048733 677 KIHRGFGSLRGLQSLRGLLALPTIEADSQVLKEL 710 (887)
Q Consensus 677 ~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l 710 (887)
.+|..+++|++|+.|+ ++.+.+.+..+..+
T Consensus 481 ~iP~~l~~L~~L~~L~----Ls~N~l~g~iP~~l 510 (623)
T PLN03150 481 SIPESLGQLTSLRILN----LNGNSLSGRVPAAL 510 (623)
T ss_pred CCchHHhcCCCCCEEE----CcCCcccccCChHH
Confidence 3455556666666665 44444444444433
No 156
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.53 E-value=0.0043 Score=69.21 Aligned_cols=152 Identities=12% Similarity=0.088 Sum_probs=84.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPE 273 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 273 (887)
..-+.|+|+.|+|||+|++.+++... .....+++++ ...+...+...+...
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~--~~~~~v~yi~------~~~f~~~~~~~l~~~--------------------- 191 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR--ESGGKILYVR------SELFTEHLVSAIRSG--------------------- 191 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEee------HHHHHHHHHHHHhcc---------------------
Confidence 35688999999999999999998522 2222334444 234444444443211
Q ss_pred ccccCCHHHHHHHHHHHhCCCceEEEEeccCChh---HH-HHHHHhcCC-CCCCcEEEEEccch-h--------HHhhhc
Q 048733 274 EIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID---FW-RDVEHALLD-NKKCSRIIVTTRHM-N--------VAKFCK 339 (887)
Q Consensus 274 ~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iivTtR~~-~--------v~~~~~ 339 (887)
. ...++...+ +.-+|++||+.... .+ +.+...+.. ...|..||+||... . +...+.
T Consensus 192 -----~----~~~f~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~ 261 (445)
T PRK12422 192 -----E----MQRFRQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFE 261 (445)
T ss_pred -----h----HHHHHHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhc
Confidence 0 122344333 34588899985432 11 222222211 11245788888542 1 111221
Q ss_pred cCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCC
Q 048733 340 LSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGL 392 (887)
Q Consensus 340 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 392 (887)
. ...+.+.+++.++-..++.+++-.... .. .+++..-|++.+.|.
T Consensus 262 ~---Gl~~~l~~pd~e~r~~iL~~k~~~~~~--~l---~~evl~~la~~~~~d 306 (445)
T PRK12422 262 W---GIAIPLHPLTKEGLRSFLERKAEALSI--RI---EETALDFLIEALSSN 306 (445)
T ss_pred C---CeEEecCCCCHHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHhcCCC
Confidence 1 268899999999999999987744321 11 245555566666543
No 157
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.52 E-value=0.0019 Score=71.01 Aligned_cols=122 Identities=18% Similarity=0.215 Sum_probs=78.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCcccc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEI 275 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (887)
++.|.|+-++||||+++.+... .... .+++..-+......-+.+....
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~~~--------------------------- 86 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLLRA--------------------------- 86 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHHHH---------------------------
Confidence 9999999999999999777663 2222 3444432211111111111111
Q ss_pred ccCCHHHHHHHHHHHhCCCceEEEEeccCChhHHHHHHHhcCCCCCCcEEEEEccchhHHhhhc---cCCCcceeecCCC
Q 048733 276 HNMEETDLITTLRDHLKDKSYMVVLDDVWKIDFWRDVEHALLDNKKCSRIIVTTRHMNVAKFCK---LSSSVRIHELETL 352 (887)
Q Consensus 276 ~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~---~~~~~~~~~l~~L 352 (887)
+...-..++..++||.|.....|......+.+.++. +|++|+-+........ -.+....+.+-||
T Consensus 87 -----------~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~Pl 154 (398)
T COG1373 87 -----------YIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPL 154 (398)
T ss_pred -----------HHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCC
Confidence 111111277899999999999999999999887776 8999888754433211 1223478999999
Q ss_pred ChhhHHHHH
Q 048733 353 PPDEAWKLF 361 (887)
Q Consensus 353 ~~~e~~~lf 361 (887)
|-.|...+-
T Consensus 155 SF~Efl~~~ 163 (398)
T COG1373 155 SFREFLKLK 163 (398)
T ss_pred CHHHHHhhc
Confidence 998876543
No 158
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.49 E-value=0.00079 Score=81.86 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=37.9
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+.++||+.++.++++.|.... ...+.++|++|+|||++|..+++.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999997754 234558999999999999998875
No 159
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.47 E-value=0.0034 Score=71.85 Aligned_cols=178 Identities=15% Similarity=0.182 Sum_probs=95.2
Q ss_pred ccCccccchhcHHHHHHHHh---cC-------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCH
Q 048733 169 EDDEVVGIESIKDKLIDLML---NG-------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNK 238 (887)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (887)
.-++++|.++.++++.+++. .. ....+-+.++|++|+|||+||+.+++.. ... ++.++.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~---- 121 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG---- 121 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----
Confidence 34578898877766655443 21 1223458899999999999999999842 222 222221
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh------------
Q 048733 239 NDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI------------ 306 (887)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------ 306 (887)
.++ .....+ .....+...+.......+.+|+|||++..
T Consensus 122 ~~~----~~~~~g--------------------------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~ 171 (495)
T TIGR01241 122 SDF----VEMFVG--------------------------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGN 171 (495)
T ss_pred HHH----HHHHhc--------------------------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCcc
Confidence 111 111111 11233444444555567899999999542
Q ss_pred hHHHHHHH----hcC--CCCCCcEEEEEccchhHHh-hh-ccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHH
Q 048733 307 DFWRDVEH----ALL--DNKKCSRIIVTTRHMNVAK-FC-KLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSEL 378 (887)
Q Consensus 307 ~~~~~l~~----~l~--~~~~gs~iivTtR~~~v~~-~~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~ 378 (887)
+.+..... .+. ....+-.||.||....... .. ....-...+.++..+.++-.++|...+..... .+
T Consensus 172 ~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~----~~-- 245 (495)
T TIGR01241 172 DEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL----AP-- 245 (495)
T ss_pred HHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC----Cc--
Confidence 11222222 221 1223445566665543211 11 11111267889988888888888877633211 11
Q ss_pred HHHHHHHHHHhCCCc
Q 048733 379 KELSQDILAKCGGLP 393 (887)
Q Consensus 379 ~~~~~~I~~~c~G~P 393 (887)
......+++.+.|.-
T Consensus 246 ~~~l~~la~~t~G~s 260 (495)
T TIGR01241 246 DVDLKAVARRTPGFS 260 (495)
T ss_pred chhHHHHHHhCCCCC
Confidence 122346778887743
No 160
>PRK08116 hypothetical protein; Validated
Probab=97.47 E-value=0.00072 Score=70.11 Aligned_cols=102 Identities=24% Similarity=0.244 Sum_probs=57.3
Q ss_pred EEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEE 274 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (887)
..+.|+|.+|+|||.||..+++.. ..+...+++++ ..+++..+...+....
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~~--------------------- 165 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSSG--------------------- 165 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhccc---------------------
Confidence 357899999999999999999953 22233455655 3445555544432211
Q ss_pred cccCCHHHHHHHHHHHhCCCceEEEEeccC--ChhHHHH--HHHhcCC-CCCCcEEEEEccch
Q 048733 275 IHNMEETDLITTLRDHLKDKSYMVVLDDVW--KIDFWRD--VEHALLD-NKKCSRIIVTTRHM 332 (887)
Q Consensus 275 ~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~--~~~~~~~--l~~~l~~-~~~gs~iivTtR~~ 332 (887)
..+..+ +.+.+.+-. ||||||+. ....|.. +...+.. ...+..+||||...
T Consensus 166 --~~~~~~----~~~~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 166 --KEDENE----IIRSLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred --cccHHH----HHHHhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 011122 233344333 89999993 3344443 2222221 13456789998753
No 161
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=3.6e-05 Score=89.72 Aligned_cols=132 Identities=21% Similarity=0.285 Sum_probs=64.8
Q ss_pred ceeEEEEecCCCC-C-CCccccc-cccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchhh
Q 048733 598 KLMKVLDLEDSPI-N-YLPEGVG-NLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEA 674 (887)
Q Consensus 598 ~~Lr~L~L~~~~l-~-~lp~~i~-~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 674 (887)
.+|+.||++|... . ..|..+| .|++|+.|.+.+-. + ....+-.-..++++|++|+++++ .
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-~-----~~~dF~~lc~sFpNL~sLDIS~T-----------n 184 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-F-----DNDDFSQLCASFPNLRSLDISGT-----------N 184 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCce-e-----cchhHHHHhhccCccceeecCCC-----------C
Confidence 3456666665431 1 3344444 45566666665521 0 01112222335666666666665 1
Q ss_pred hhhccCCccccccccccccccccCceecc-hHHHHHhhccccccceeEEecc-CChhHH----HHHHhcccCCcEEEEee
Q 048733 675 AAKIHRGFGSLRGLQSLRGLLALPTIEAD-SQVLKELMMLRQLNMLSIRRQN-GNGRDL----CALIANLENVETLGVLM 748 (887)
Q Consensus 675 ~~~~p~~i~~L~~L~~L~~~~~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~l----~~~l~~~~~L~~L~l~~ 748 (887)
...+ .||++|++||.|. +.+..+. .....++-+|++|+.|+++... .....+ .+.-..+++|+.|+.++
T Consensus 185 I~nl-~GIS~LknLq~L~----mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 185 ISNL-SGISRLKNLQVLS----MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred ccCc-HHHhccccHHHHh----ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 2222 4566666666666 3343332 2455666777777777777621 111111 12222356666666665
Q ss_pred cCC
Q 048733 749 KSK 751 (887)
Q Consensus 749 ~~~ 751 (887)
...
T Consensus 260 Tdi 262 (699)
T KOG3665|consen 260 TDI 262 (699)
T ss_pred cch
Confidence 543
No 162
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=8.9e-05 Score=86.54 Aligned_cols=104 Identities=24% Similarity=0.252 Sum_probs=74.8
Q ss_pred CceEEEEecCCC---ccc-cccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCcccccccccccee
Q 048733 551 KTRRITIQRSID---DGA-LESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLL 626 (887)
Q Consensus 551 ~~r~lsi~~~~~---~~~-~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 626 (887)
++|||.+.+... ..+ .-..-+|.||+|.+.+-....+. ....+.+|++|+.||+++++++.+ ..+++|++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 466776665321 111 11346899999999987664333 346678999999999999999987 789999999999
Q ss_pred ecCCCceeeecCccccccchhhhcccccCeeeeccc
Q 048733 627 NARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHY 662 (887)
Q Consensus 627 ~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~ 662 (887)
.+++-. +..+ .--..+.+|++|++|+++..
T Consensus 201 ~mrnLe---~e~~---~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 201 SMRNLE---FESY---QDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hccCCC---CCch---hhHHHHhcccCCCeeecccc
Confidence 998743 1111 11136789999999999986
No 163
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.0081 Score=63.52 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=64.5
Q ss_pred CCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEEEccch-hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCC
Q 048733 293 DKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIVTTRHM-NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPS 369 (887)
Q Consensus 293 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 369 (887)
+++-++|+|+++.+ ..-..+...+-....++.+|++|.+. .+..... +....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIr--SRCq~i~~~~~~~~~~~~~L~~~~--~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIR--SRCQRLEFKLPPAHEALAWLLAQG--V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHH--hhheEeeCCCcCHHHHHHHHHHcC--C-
Confidence 45669999999865 45667777776666677777766653 3332221 223788999999999988887531 0
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCchHHHHHh
Q 048733 370 SGGCCPSELKELSQDILAKCGGLPLAIVAVG 400 (887)
Q Consensus 370 ~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 400 (887)
. ...+..++..++|.|+.+..+.
T Consensus 187 -----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2336678999999998765544
No 164
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.44 E-value=0.00083 Score=81.29 Aligned_cols=45 Identities=24% Similarity=0.440 Sum_probs=38.3
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
++++||+.++.++++.|.... ...+.++|++|+|||++|+.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998754 334568999999999999999885
No 165
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.0043 Score=66.90 Aligned_cols=154 Identities=17% Similarity=0.195 Sum_probs=89.6
Q ss_pred CccccchhcH-HHHHHHHhcC-CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHH
Q 048733 171 DEVVGIESIK-DKLIDLMLNG-RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKE 248 (887)
Q Consensus 171 ~~~vGr~~~~-~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 248 (887)
.-++|-.... ..+...+.+. ......+.|+|..|.|||-|++.+.+. ...+......++++ ......+++..
T Consensus 88 nFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~~v~a 161 (408)
T COG0593 88 NFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTNDFVKA 161 (408)
T ss_pred heeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHHHHHH
Confidence 3445544333 2333333332 224678999999999999999999994 44444322233322 33444455444
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh---hHHHH----HHHhcCCCCC
Q 048733 249 FHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI---DFWRD----VEHALLDNKK 321 (887)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~~~----l~~~l~~~~~ 321 (887)
+..+ -.+.+++.. .-=++++||++.. +.|+. +...+...
T Consensus 162 ~~~~------------------------------~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~-- 207 (408)
T COG0593 162 LRDN------------------------------EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN-- 207 (408)
T ss_pred HHhh------------------------------hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--
Confidence 4321 123344444 3348899999653 23332 22223333
Q ss_pred CcEEEEEccch---------hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcC
Q 048733 322 CSRIIVTTRHM---------NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFG 367 (887)
Q Consensus 322 gs~iivTtR~~---------~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~ 367 (887)
|-.||+|++.. ...+...+. -++++.+.+.+....++.+++..
T Consensus 208 ~kqIvltsdr~P~~l~~~~~rL~SR~~~G---l~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 208 GKQIVLTSDRPPKELNGLEDRLRSRLEWG---LVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred CCEEEEEcCCCchhhccccHHHHHHHhce---eEEeeCCCCHHHHHHHHHHHHHh
Confidence 33899998753 233334343 78999999999999999987643
No 166
>PLN03150 hypothetical protein; Provisional
Probab=97.43 E-value=0.00015 Score=84.97 Aligned_cols=101 Identities=19% Similarity=0.164 Sum_probs=45.7
Q ss_pred cceeEEeecc--CCCChhhhcCCCcceeEEEecccCCcC---cCcCcccceeeeCcCCCceeEEEcCCCccCccEEEEcc
Q 048733 767 LQYLSLRGNM--KKLPDWILKLKNLIGSRLILSGLTEDP---ISWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGP 841 (887)
Q Consensus 767 L~~L~L~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~ 841 (887)
++.|+|+++. +.+|..+..+++|+.|+|++|.+.+.. +..+++|+.|+|.++.-...+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 3444444432 344444445555555555555443321 22444455555554433334444445555555555555
Q ss_pred CCCCCccccccccC-CCCCEEEEEech
Q 048733 842 CPLLMEIPIGIDHL-RNLELLTFHDMS 867 (887)
Q Consensus 842 c~~l~~lp~~~~~l-~~L~~L~l~~c~ 867 (887)
|.....+|..+... .++..+++.+|+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 55444455444332 234444444443
No 167
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0048 Score=69.15 Aligned_cols=159 Identities=19% Similarity=0.309 Sum_probs=92.5
Q ss_pred cCccccchhcHHHHHHHHhcC----CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNG----RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTI 245 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 245 (887)
+..-+|.++-+++|.+++.-+ .-+.++++.+|++|+|||++|+.++.- ....|- -++|+.-.|..++-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkFf---RfSvGG~tDvAeIk--- 481 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKFF---RFSVGGMTDVAEIK--- 481 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCceE---EEeccccccHHhhc---
Confidence 456789999999999998753 446789999999999999999999983 444442 24555555543331
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh---CCCceEEEEeccCCh------hHHHHHHHhc
Q 048733 246 IKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL---KDKSYMVVLDDVWKI------DFWRDVEHAL 316 (887)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L---~~kr~LlVlDdv~~~------~~~~~l~~~l 316 (887)
+... .-...+-.++.++| +..+-|+.||.|+.. +.-..++..|
T Consensus 482 -----GHRR-----------------------TYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 482 -----GHRR-----------------------TYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred -----ccce-----------------------eeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhc
Confidence 1000 00111222344444 345678899998643 2223333333
Q ss_pred CC-CC------------CCcEEEE-Eccch--hHHhhhccCCCcceeecCCCChhhHHHHHHHhhc
Q 048733 317 LD-NK------------KCSRIIV-TTRHM--NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAF 366 (887)
Q Consensus 317 ~~-~~------------~gs~iiv-TtR~~--~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 366 (887)
.+ .+ .=|+|+. .|-|. .+.... ....+.|++.+-..+|-..+-.++..
T Consensus 534 DPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pL--lDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 534 DPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPL--LDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred ChhhccchhhhccccccchhheEEEEeccccccCChhh--hhhhheeeccCccHHHHHHHHHHhhh
Confidence 21 11 1256643 33321 011000 01227899999998888877777653
No 168
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0049 Score=66.54 Aligned_cols=147 Identities=19% Similarity=0.261 Sum_probs=88.6
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q 048733 192 SKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPT 271 (887)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 271 (887)
.....|.+.|++|+|||+||..++.+ ..|..+--++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiS---------------------------------------- 571 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIIS---------------------------------------- 571 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeC----------------------------------------
Confidence 35677889999999999999999874 4465433332
Q ss_pred ccccccCCHHHHHHHHHHHh----CCCceEEEEeccCChhHH------------HHHHHhcC---CCCCCcEEEEEccch
Q 048733 272 PEEIHNMEETDLITTLRDHL----KDKSYMVVLDDVWKIDFW------------RDVEHALL---DNKKCSRIIVTTRHM 332 (887)
Q Consensus 272 ~~~~~~~~~~~l~~~l~~~L----~~kr~LlVlDdv~~~~~~------------~~l~~~l~---~~~~gs~iivTtR~~ 332 (887)
|+++..+++..-...+++.+ +..--.||+||++..-+| +.++..|. +.+..--|+-||...
T Consensus 572 pe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~ 651 (744)
T KOG0741|consen 572 PEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRR 651 (744)
T ss_pred hHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHH
Confidence 12233334444444454444 445579999999765433 22333332 333333445577777
Q ss_pred hHHhhhccCC-CcceeecCCCCh-hhHHHHHHHhh-cCCCCCCCCChHHHHHHHHHHHHh
Q 048733 333 NVAKFCKLSS-SVRIHELETLPP-DEAWKLFCRKA-FGPSSGGCCPSELKELSQDILAKC 389 (887)
Q Consensus 333 ~v~~~~~~~~-~~~~~~l~~L~~-~e~~~lf~~~~-~~~~~~~~~~~~~~~~~~~I~~~c 389 (887)
.+...|+... -...|.++.++. ++..+.++..- |. +.+.+.++.+...+|
T Consensus 652 ~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~fs-------d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 652 EVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNIFS-------DDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHcCHHHhhhheeecCccCchHHHHHHHHHccCCC-------cchhHHHHHHHhccc
Confidence 7877665421 125788999987 67777776642 22 334455666666666
No 169
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.42 E-value=7.2e-05 Score=83.64 Aligned_cols=222 Identities=24% Similarity=0.259 Sum_probs=131.5
Q ss_pred ccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccch
Q 048733 593 CIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPT 672 (887)
Q Consensus 593 ~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 672 (887)
.+..++.|..|++.+|.|..+...+..+++|++|++++|. |..+. .+..++.|+.|++.+|
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~--------I~~i~-~l~~l~~L~~L~l~~N---------- 150 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK--------ITKLE-GLSTLTLLKELNLSGN---------- 150 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccc--------ccccc-chhhccchhhheeccC----------
Confidence 3567888999999999988877658889999988888764 55553 4556777888988887
Q ss_pred hhhhhccCCccccccccccccccccCceecchHHH-HHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCC
Q 048733 673 EAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVL-KELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSK 751 (887)
Q Consensus 673 ~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 751 (887)
.+..+. ++..+++|+.++ ++.+.+..... . +..+.+++.+.+..+.... ...+..+..+..+++..+..
T Consensus 151 -~i~~~~-~~~~l~~L~~l~----l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~---i~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 151 -LISDIS-GLESLKSLKLLD----LSYNRIVDIENDE-LSELISLEELDLGGNSIRE---IEGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred -cchhcc-CCccchhhhccc----CCcchhhhhhhhh-hhhccchHHHhccCCchhc---ccchHHHHHHHHhhcccccc
Confidence 333332 355577777776 54554433222 2 5777778877777532211 11122222333334444432
Q ss_pred ccccccCccccccc-ccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCc-CcCcCcccceeeeCcCCCceeE---E
Q 048733 752 EEILDLQSLSSPPQ-HLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTED-PISWFPKLRKLVLLNFEAVKSV---I 825 (887)
Q Consensus 752 ~~~~~l~~l~~~~~-~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~-~~~~~~~L~~L~l~~~~~l~~~---~ 825 (887)
.. +..+..... +|+.+++.++. ...+..+..+.++..|++.++.+... .+..++.+..+..........+ .
T Consensus 221 ~~---~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (414)
T KOG0531|consen 221 SK---LEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQ 297 (414)
T ss_pred ee---ccCcccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhc
Confidence 22 222222220 38889998875 44545677788889999988876543 3334555555555544322111 1
Q ss_pred E-cCCCccCccEEEEccCCCCC
Q 048733 826 I-EKGAMPDIRELWIGPCPLLM 846 (887)
Q Consensus 826 ~-~~~~lp~L~~L~l~~c~~l~ 846 (887)
. .....+.+..+.+..++.-.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 298 EYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cccccccccccccccccCcccc
Confidence 1 14456777777777776433
No 170
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.41 E-value=9.7e-05 Score=52.44 Aligned_cols=35 Identities=40% Similarity=0.508 Sum_probs=25.7
Q ss_pred ceeEEEEecCCCCCCCccccccccccceeecCCCc
Q 048733 598 KLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTK 632 (887)
Q Consensus 598 ~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~ 632 (887)
++|++|++++|.|+.+|..+++|++|++|++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 35788888888888887778888888888777764
No 171
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.41 E-value=0.01 Score=58.67 Aligned_cols=181 Identities=20% Similarity=0.213 Sum_probs=102.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeC-CCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVG-KEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPT 271 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 271 (887)
+..++.++|.-|+|||++.+....... + +.++-|.+. ...+...+...|+..+....+
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~--~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~----------------- 108 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN--E--DQVAVVVIDKPTLSDATLLEAIVADLESQPK----------------- 108 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC--C--CceEEEEecCcchhHHHHHHHHHHHhccCcc-----------------
Confidence 456899999999999999995544211 1 111223333 345666777777777765211
Q ss_pred ccccccCCHHHHHHHHHHHh-CCCc-eEEEEeccCCh--hHHHHHHHhcC---CC-CCCcEEEE---Eccc----hhHHh
Q 048733 272 PEEIHNMEETDLITTLRDHL-KDKS-YMVVLDDVWKI--DFWRDVEHALL---DN-KKCSRIIV---TTRH----MNVAK 336 (887)
Q Consensus 272 ~~~~~~~~~~~l~~~l~~~L-~~kr-~LlVlDdv~~~--~~~~~l~~~l~---~~-~~gs~iiv---TtR~----~~v~~ 336 (887)
..-....++....+.... +++| ..+++||+... +..+.++.... +. +.-+.+++ +-+. .....
T Consensus 109 --~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e 186 (269)
T COG3267 109 --VNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRE 186 (269)
T ss_pred --chhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHh
Confidence 001111223333333333 5677 89999999654 34444443322 11 11122232 1111 11111
Q ss_pred hhccCCCcce-eecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHhh
Q 048733 337 FCKLSSSVRI-HELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGG 401 (887)
Q Consensus 337 ~~~~~~~~~~-~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 401 (887)
. ...... |++.|++.++...++..+.-+...+ .+--..+....|.....|.|.++..++.
T Consensus 187 ~---~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~--~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 187 L---EQRIDIRIELPPLTEAETGLYLRHRLEGAGLP--EPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred h---hheEEEEEecCCcChHHHHHHHHHHHhccCCC--cccCChhHHHHHHHHhccchHHHHHHHH
Confidence 1 112244 9999999999999998887655322 2222356778899999999999987764
No 172
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.38 E-value=0.0011 Score=65.76 Aligned_cols=49 Identities=33% Similarity=0.509 Sum_probs=37.8
Q ss_pred cccCccccchhcHHHHHHHHh---cCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 168 VEDDEVVGIESIKDKLIDLML---NGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+.-+.++|.|..++.|++-.. .+. +..-+.++|..|.|||++++.+.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHH
Confidence 445689999999999876433 232 3456778999999999999999884
No 173
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.38 E-value=0.0062 Score=72.76 Aligned_cols=47 Identities=28% Similarity=0.591 Sum_probs=39.5
Q ss_pred cCccccchhcHHHHHHHHhcC----CCCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 170 DDEVVGIESIKDKLIDLMLNG----RSKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
+...+|.++-+++|.+++... .....++.++|++|+||||+|+.++.
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999988742 22456899999999999999999997
No 174
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0045 Score=66.54 Aligned_cols=168 Identities=12% Similarity=0.093 Sum_probs=91.4
Q ss_pred cccc-chhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 172 EVVG-IESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 172 ~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
.++| -+..++.+...+..+. -.+...++|+.|+||||+|..+.+..--....... .+..-...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~---- 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRID---- 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHh----
Confidence 4566 6667777777776543 34577899999999999999887641111100000 000001111110
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH----hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH----LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSR 324 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 324 (887)
... .++-.. -.+ +......+++.+.+... ..+.+=++|+|+++.. +..+.+...+.....++.
T Consensus 74 ~~~--hpD~~~--------i~~-~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~ 142 (329)
T PRK08058 74 SGN--HPDVHL--------VAP-DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTT 142 (329)
T ss_pred cCC--CCCEEE--------ecc-ccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCce
Confidence 000 000000 000 01122334443333221 2345568999999755 457778888876666777
Q ss_pred EEEEccchh-HHhhhccCCCcceeecCCCChhhHHHHHHHh
Q 048733 325 IIVTTRHMN-VAKFCKLSSSVRIHELETLPPDEAWKLFCRK 364 (887)
Q Consensus 325 iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~ 364 (887)
+|++|.+.. +..... +....+++.+++.++..+.+.+.
T Consensus 143 ~Il~t~~~~~ll~TIr--SRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 143 AILLTENKHQILPTIL--SRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEEEeCChHhCcHHHH--hhceeeeCCCCCHHHHHHHHHHc
Confidence 777776543 222222 23379999999999998888653
No 175
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.38 E-value=0.0031 Score=60.05 Aligned_cols=136 Identities=18% Similarity=0.224 Sum_probs=76.6
Q ss_pred cchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccC------------------CCceeEEEEeCCCC
Q 048733 175 GIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKT------------------HFSCRAWVTVGKEY 236 (887)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~F~~~~wv~v~~~~ 236 (887)
|-+...+.|.+.+..+. -...+.++|+.|+||+++|..+++..--.. ...-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 44566677777776653 234678999999999999998877421111 1112223322111
Q ss_pred CHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-----CCCceEEEEeccCCh--hHH
Q 048733 237 NKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-----KDKSYMVVLDDVWKI--DFW 309 (887)
Q Consensus 237 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~ 309 (887)
......+++. .+.+.+ .++.=++|+||++.. +.+
T Consensus 79 --------------------------------------~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~ 119 (162)
T PF13177_consen 79 --------------------------------------KKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQ 119 (162)
T ss_dssp --------------------------------------SSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHH
T ss_pred --------------------------------------cchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHH
Confidence 0123334444 333333 234569999999865 578
Q ss_pred HHHHHhcCCCCCCcEEEEEccchh-HHhhhccCCCcceeecCCCC
Q 048733 310 RDVEHALLDNKKCSRIIVTTRHMN-VAKFCKLSSSVRIHELETLP 353 (887)
Q Consensus 310 ~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~ 353 (887)
..++..+-....++.+|++|++.. +..... +....+.+.++|
T Consensus 120 NaLLK~LEepp~~~~fiL~t~~~~~il~TI~--SRc~~i~~~~ls 162 (162)
T PF13177_consen 120 NALLKTLEEPPENTYFILITNNPSKILPTIR--SRCQVIRFRPLS 162 (162)
T ss_dssp HHHHHHHHSTTTTEEEEEEES-GGGS-HHHH--TTSEEEEE----
T ss_pred HHHHHHhcCCCCCEEEEEEECChHHChHHHH--hhceEEecCCCC
Confidence 888888887778889988888754 222221 122666776654
No 176
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.014 Score=61.83 Aligned_cols=183 Identities=10% Similarity=0.065 Sum_probs=101.5
Q ss_pred HHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCC
Q 048733 180 KDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDG 259 (887)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~ 259 (887)
.+.+...+..+. -...+.+.|+.|+||+++|..++...--..... ...+..-..-+.+... ..+|-
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g------~HPD~ 76 (325)
T PRK06871 11 YQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAG------NHPDF 76 (325)
T ss_pred HHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcC------CCCCE
Confidence 345555555543 235778999999999999998877411111100 0011111111111110 00000
Q ss_pred CCCCCCCCCCCCccccccCCHHHHHHHHHHHh-----CCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEEEccch
Q 048733 260 PDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-----KDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIVTTRHM 332 (887)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~ 332 (887)
..- .|++...+..+++.+. .+.+ .+++=++|+|+++.+ .....+...+-....++.+|++|.+.
T Consensus 77 ---~~i-----~p~~~~~I~id~iR~l-~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~ 147 (325)
T PRK06871 77 ---HIL-----EPIDNKDIGVDQVREI-NEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLS 147 (325)
T ss_pred ---EEE-----ccccCCCCCHHHHHHH-HHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 000 0001122344444432 2322 355668889999865 47788888887777777777777664
Q ss_pred -hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 048733 333 -NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIV 397 (887)
Q Consensus 333 -~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 397 (887)
.+..... +....+.+.+++.++..+.+...... . ...+...+..++|.|+.+.
T Consensus 148 ~~llpTI~--SRC~~~~~~~~~~~~~~~~L~~~~~~-------~---~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 148 AALLPTIY--SRCQTWLIHPPEEQQALDWLQAQSSA-------E---ISEILTALRINYGRPLLAL 201 (325)
T ss_pred HhCchHHH--hhceEEeCCCCCHHHHHHHHHHHhcc-------C---hHHHHHHHHHcCCCHHHHH
Confidence 3332211 22278999999999999888876411 1 1235567888999996443
No 177
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.35 E-value=0.00079 Score=61.87 Aligned_cols=21 Identities=43% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEEccCCCCHHHHHHHHhcc
Q 048733 197 VAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~ 217 (887)
|.|+|++|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999995
No 178
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.35 E-value=0.0084 Score=71.95 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=37.7
Q ss_pred CccccchhcHHHHHHHHhcC-------CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNG-------RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|.+..++.+.+.+... .....++.++|+.|+|||+||+.+++.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~ 507 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA 507 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH
Confidence 45789999999888877632 223457899999999999999999884
No 179
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.35 E-value=0.00053 Score=80.95 Aligned_cols=45 Identities=31% Similarity=0.487 Sum_probs=37.8
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+.++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999888753 234568999999999999999874
No 180
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.35 E-value=1.9e-05 Score=88.33 Aligned_cols=240 Identities=21% Similarity=0.221 Sum_probs=142.4
Q ss_pred CCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchhhh
Q 048733 596 NFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAA 675 (887)
Q Consensus 596 ~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 675 (887)
.+..+..+++..+.+..+-..++.+++|.+|++.+|. +..+...+..+++|++|++++| .+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~--------i~~i~~~l~~~~~L~~L~ls~N-----------~I 130 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK--------IEKIENLLSSLVNLQVLDLSFN-----------KI 130 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccc--------hhhcccchhhhhcchheecccc-----------cc
Confidence 4566777778888887755668899999999888764 7766655888999999999997 33
Q ss_pred hhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHH-HhcccCCcEEEEeecCCccc
Q 048733 676 AKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCAL-IANLENVETLGVLMKSKEEI 754 (887)
Q Consensus 676 ~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~~~~~ 754 (887)
..+. ++..|+.|+.|. +..|.+ ..+..+..+++|+.+++.++... .+... +..+.+|+.+.+..+.....
T Consensus 131 ~~i~-~l~~l~~L~~L~----l~~N~i--~~~~~~~~l~~L~~l~l~~n~i~--~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 131 TKLE-GLSTLTLLKELN----LSGNLI--SDISGLESLKSLKLLDLSYNRIV--DIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred cccc-chhhccchhhhe----eccCcc--hhccCCccchhhhcccCCcchhh--hhhhhhhhhccchHHHhccCCchhcc
Confidence 3332 355666677766 334433 33444555777888877764222 12221 46677888888887754443
Q ss_pred cccCcccccccccceeEEeecc-CCCChhhhcCC--CcceeEEEecccCCc--CcCcCcccceeeeCcCCCceeEEEcCC
Q 048733 755 LDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLK--NLIGSRLILSGLTED--PISWFPKLRKLVLLNFEAVKSVIIEKG 829 (887)
Q Consensus 755 ~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~--~L~~L~L~~~~l~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~ 829 (887)
..+.... .+..+++..+. ..+- .+..+. .|+.++++++.+... .+..+.++..|.+.+.. ..... ...
T Consensus 202 ~~~~~~~----~l~~~~l~~n~i~~~~-~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~-~~~~~-~~~ 274 (414)
T KOG0531|consen 202 EGLDLLK----KLVLLSLLDNKISKLE-GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR-ISNLE-GLE 274 (414)
T ss_pred cchHHHH----HHHHhhcccccceecc-CcccchhHHHHHHhcccCccccccccccccccccccchhhcc-ccccc-ccc
Confidence 2222221 34444554442 1111 122233 388888998887764 35566677777666543 11111 122
Q ss_pred CccCccEEEEccCCCCC---cccc-ccccCCCCCEEEEEechhhh
Q 048733 830 AMPDIRELWIGPCPLLM---EIPI-GIDHLRNLELLTFHDMSKQV 870 (887)
Q Consensus 830 ~lp~L~~L~l~~c~~l~---~lp~-~~~~l~~L~~L~l~~c~~~~ 870 (887)
..+.+..+....++... .... .....+.+..+.+..+|...
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 275 RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 35556666665555332 1111 24567788888888887544
No 181
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.31 E-value=0.0017 Score=60.35 Aligned_cols=38 Identities=32% Similarity=0.349 Sum_probs=26.7
Q ss_pred EEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCC
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK 234 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 234 (887)
..+.|+|++|+||||+++.+++. .......++.+..+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~ 40 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGED 40 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEE
Confidence 47889999999999999999985 322222344554433
No 182
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.014 Score=61.73 Aligned_cols=182 Identities=12% Similarity=0.048 Sum_probs=101.1
Q ss_pred HHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCC
Q 048733 180 KDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDG 259 (887)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~ 259 (887)
.+++...+..+. -...+.++|+.|+||+++|..+++.---...-. .....-..-+.+.. . ..+|-
T Consensus 12 ~~~l~~~~~~~r-l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--------~~Cg~C~sC~~~~~----g--~HPD~ 76 (319)
T PRK06090 12 WQNWKAGLDAGR-IPGALLLQSDEGLGVESLVELFSRALLCQNYQS--------EACGFCHSCELMQS----G--NHPDL 76 (319)
T ss_pred HHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--------CCCCCCHHHHHHHc----C--CCCCE
Confidence 445555555443 345788999999999999998876411111000 00000011111110 0 00000
Q ss_pred CCCCCCCCCCCCcc-ccccCCHHHHHHHHHHHh-----CCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEEEccc
Q 048733 260 PDRHAEGPLLPTPE-EIHNMEETDLITTLRDHL-----KDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIVTTRH 331 (887)
Q Consensus 260 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~ 331 (887)
..- .|+ ....+..+++.+ +.+.+ .+.+=++|+|+++.+ .....+...+-....++.+|++|.+
T Consensus 77 ---~~i-----~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 77 ---HVI-----KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred ---EEE-----ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 000 000 012234455433 33333 234568999999765 5788888888776667777766665
Q ss_pred h-hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHh
Q 048733 332 M-NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVG 400 (887)
Q Consensus 332 ~-~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 400 (887)
. .+..... +....+.+.+++.+++.+.+.... . + ....+++.++|.|+.+..+.
T Consensus 148 ~~~lLpTI~--SRCq~~~~~~~~~~~~~~~L~~~~-------~--~----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 148 QKRLLPTIV--SRCQQWVVTPPSTAQAMQWLKGQG-------I--T----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred hhhChHHHH--hcceeEeCCCCCHHHHHHHHHHcC-------C--c----hHHHHHHHcCCCHHHHHHHh
Confidence 4 3333222 223789999999999999886531 0 1 13467899999999776553
No 183
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.28 E-value=0.00086 Score=72.09 Aligned_cols=57 Identities=26% Similarity=0.307 Sum_probs=41.8
Q ss_pred cCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeeccc
Q 048733 594 IANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHY 662 (887)
Q Consensus 594 ~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~ 662 (887)
+..+++++.|++++|.++.+|. --.+|+.|.+++|. .+..+|..+. .+|++|.+++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~-------nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCN-------NLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCC-------CcccCCchhh--hhhhheEccCc
Confidence 3456888999999998888882 22358888887754 5667776552 57889988887
No 184
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.23 E-value=0.0032 Score=72.49 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=40.1
Q ss_pred cCccccchhcHHHHHHHHhcCC---CCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 170 DDEVVGIESIKDKLIDLMLNGR---SKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-++++|-++.++++..++.... ....++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999987642 23468999999999999999999874
No 185
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.22 E-value=2.2e-05 Score=86.91 Aligned_cols=163 Identities=23% Similarity=0.237 Sum_probs=75.9
Q ss_pred cccCCCceeEEEEecCCCCCCCcccccccc-ccceeecCC----------------------Cc--eeeecCccccccch
Q 048733 592 SCIANFKLMKVLDLEDSPINYLPEGVGNLF-NLHLLNARN----------------------TK--ILDLAHTFVSELPE 646 (887)
Q Consensus 592 ~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~-~L~~L~L~~----------------------~~--~Ldl~~~~l~~lp~ 646 (887)
-.+..|+.||+|.|.+|.+...- .+..+. .|+.|.-.+ |. +.+.++|.+..+-.
T Consensus 103 i~ifpF~sLr~LElrg~~L~~~~-GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLSTAK-GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred ceeccccceeeEEecCcchhhhh-hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence 44567899999999999876321 111111 122221111 00 44445555555555
Q ss_pred hhhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccC
Q 048733 647 EIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNG 726 (887)
Q Consensus 647 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 726 (887)
.+.-++.|++|+|+.| ...... .+..|+.|++|+ ++.|......-.....+. |..|.+++|..
T Consensus 182 SLqll~ale~LnLshN-----------k~~~v~-~Lr~l~~LkhLD----lsyN~L~~vp~l~~~gc~-L~~L~lrnN~l 244 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHN-----------KFTKVD-NLRRLPKLKHLD----LSYNCLRHVPQLSMVGCK-LQLLNLRNNAL 244 (1096)
T ss_pred HHHHHHHhhhhccchh-----------hhhhhH-HHHhcccccccc----cccchhccccccchhhhh-heeeeecccHH
Confidence 5555666666666665 222222 344555555555 444433111111111222 55555554311
Q ss_pred ChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc
Q 048733 727 NGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM 776 (887)
Q Consensus 727 ~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 776 (887)
. -...+.++.+|+.|++++|-..+...+..+.... .|+.|+|.||.
T Consensus 245 --~-tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~LeGNP 290 (1096)
T KOG1859|consen 245 --T-TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWLEGNP 290 (1096)
T ss_pred --H-hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhhcCCc
Confidence 1 1234455566666666655333322222222222 56666666654
No 186
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.0028 Score=63.32 Aligned_cols=172 Identities=24% Similarity=0.263 Sum_probs=100.2
Q ss_pred CccccchhcHHHHHHHHhcC---CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNG---RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (887)
.+|||.++-++++.=++... ...+-.|.++|++|.||||||.-+++. ...++. ++-+....-
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK--------- 90 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEK--------- 90 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccC---------
Confidence 47999999999988777653 345678999999999999999999994 333221 111110000
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh-HHHHH-HHhcC--------
Q 048733 248 EFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID-FWRDV-EHALL-------- 317 (887)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-~~~~l-~~~l~-------- 317 (887)
..++...+.. |+ ..=+|.+|.+.... ..+++ ..++.
T Consensus 91 --------------------------------~gDlaaiLt~-Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~I 136 (332)
T COG2255 91 --------------------------------PGDLAAILTN-LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIII 136 (332)
T ss_pred --------------------------------hhhHHHHHhc-CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEE
Confidence 1122222221 22 23356677775542 12221 12111
Q ss_pred CCCCCcEE-----------EEEccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHH
Q 048733 318 DNKKCSRI-----------IVTTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDIL 386 (887)
Q Consensus 318 ~~~~gs~i-----------ivTtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~ 386 (887)
..++++|. =-|||...+.+.....- .-+.+++.-+.+|-.++..+.+..-. ..-.++.+.+|+
T Consensus 137 G~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRF-Gi~~rlefY~~~eL~~Iv~r~a~~l~-----i~i~~~~a~eIA 210 (332)
T COG2255 137 GKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRF-GIIQRLEFYTVEELEEIVKRSAKILG-----IEIDEEAALEIA 210 (332)
T ss_pred ccCCccceEeccCCCeeEeeeccccccccchhHHhc-CCeeeeecCCHHHHHHHHHHHHHHhC-----CCCChHHHHHHH
Confidence 22333332 23888755444332110 14678888999999999998773322 122357789999
Q ss_pred HHhCCCchHHH
Q 048733 387 AKCGGLPLAIV 397 (887)
Q Consensus 387 ~~c~G~PLai~ 397 (887)
++..|-|--+.
T Consensus 211 ~rSRGTPRIAn 221 (332)
T COG2255 211 RRSRGTPRIAN 221 (332)
T ss_pred HhccCCcHHHH
Confidence 99999995433
No 187
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.21 E-value=0.02 Score=69.95 Aligned_cols=47 Identities=26% Similarity=0.350 Sum_probs=38.5
Q ss_pred CccccchhcHHHHHHHHhcC-------CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNG-------RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|.+..++.+...+... ..+..++.++|++|+|||++|+.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~ 618 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF 618 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999888642 123467889999999999999999874
No 188
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.021 Score=61.19 Aligned_cols=186 Identities=16% Similarity=0.121 Sum_probs=102.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCC
Q 048733 180 KDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDG 259 (887)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~ 259 (887)
-+++...+..+. -...+.+.|+.|+||+++|..++..---...-.. ..+..-..-+.+... ..+|-
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~-------~~Cg~C~sC~~~~~g------~HPD~ 76 (334)
T PRK07993 11 YEQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSRWLMCQQPQGH-------KSCGHCRGCQLMQAG------THPDY 76 (334)
T ss_pred HHHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHHcC------CCCCE
Confidence 455666665543 3457889999999999999988764111000000 001100111111100 00000
Q ss_pred CCCCCCCCCCCCccc-cccCCHHHHHHHHHHHh----CCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEEEccch
Q 048733 260 PDRHAEGPLLPTPEE-IHNMEETDLITTLRDHL----KDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIVTTRHM 332 (887)
Q Consensus 260 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~L----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~ 332 (887)
.. -.|+. ...+..+++.+.....- .+++=++|+|+++.+ ..-..+...+-....++.+|++|.+.
T Consensus 77 ---~~-----i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (334)
T PRK07993 77 ---YT-----LTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREP 148 (334)
T ss_pred ---EE-----EecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 00 00000 01234455444333221 356679999999765 46788888887766677777766654
Q ss_pred -hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 048733 333 -NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAV 399 (887)
Q Consensus 333 -~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 399 (887)
.+..... +....+.+.+++.+++.+.+.... + .. .+.+..++..++|.|..+..+
T Consensus 149 ~~lLpTIr--SRCq~~~~~~~~~~~~~~~L~~~~-~------~~---~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 149 ARLLATLR--SRCRLHYLAPPPEQYALTWLSREV-T------MS---QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred hhChHHHH--hccccccCCCCCHHHHHHHHHHcc-C------CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3332222 222788999999999998886542 1 11 233667899999999754433
No 189
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.13 E-value=0.0075 Score=59.25 Aligned_cols=48 Identities=33% Similarity=0.421 Sum_probs=38.3
Q ss_pred cCccccchhcHHH---HHHHHhcCC----CCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 170 DDEVVGIESIKDK---LIDLMLNGR----SKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 170 ~~~~vGr~~~~~~---l~~~L~~~~----~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-+++||.++.+.+ |++.|.+++ -..+-|..+|++|.|||-+|+.+++.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc
Confidence 4578998877754 567777643 34678889999999999999999995
No 190
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.12 E-value=0.017 Score=69.91 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=38.6
Q ss_pred cCccccchhcHHHHHHHHhc-------CCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 170 DDEVVGIESIKDKLIDLMLN-------GRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...++|.+..++.+.+.+.. +..+..++.++|+.|+|||.||+.++..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~ 619 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL 619 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999888753 1234568999999999999999988763
No 191
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.10 E-value=0.027 Score=58.43 Aligned_cols=56 Identities=23% Similarity=0.315 Sum_probs=35.4
Q ss_pred hcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHH
Q 048733 178 SIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLL 242 (887)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 242 (887)
.-++++..++..+. -|.|.|++|+|||+||+.+++ ..... .+.++.....+..+++
T Consensus 9 ~l~~~~l~~l~~g~----~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSGY----PVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcCC----eEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHHHh
Confidence 33455555555432 466999999999999999987 23222 3455555555554443
No 192
>PHA00729 NTP-binding motif containing protein
Probab=97.09 E-value=0.0047 Score=61.14 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=25.2
Q ss_pred HHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 183 LIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+++.+.+.+ ...|.|.|.+|+||||||..+.+.
T Consensus 8 ~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 8 IVSAYNNNG--FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHHH
Confidence 444444433 457889999999999999999884
No 193
>PRK08118 topology modulation protein; Reviewed
Probab=97.07 E-value=0.00026 Score=67.80 Aligned_cols=34 Identities=32% Similarity=0.616 Sum_probs=27.7
Q ss_pred EEEEEccCCCCHHHHHHHHhcccCcc-CCCceeEE
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNNEGLK-THFSCRAW 229 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 229 (887)
-|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 47899999999999999999864444 45777775
No 194
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.07 E-value=0.0077 Score=72.48 Aligned_cols=177 Identities=14% Similarity=0.169 Sum_probs=95.4
Q ss_pred cCccccchhcHHHHHHHHhc-----------CCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCH
Q 048733 170 DDEVVGIESIKDKLIDLMLN-----------GRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNK 238 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (887)
-..+.|.+..+++|.+.+.- +-...+-+.++|++|.|||++|+.+++. ....| +.+..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~---- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG---- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----
Confidence 34578888888887776542 1123445789999999999999999984 33333 22221
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh---------h--
Q 048733 239 NDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI---------D-- 307 (887)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---------~-- 307 (887)
. +++....+ .+...+...+...-+..+.+|+||+++.. .
T Consensus 521 ~----~l~~~~vG--------------------------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~ 570 (733)
T TIGR01243 521 P----EILSKWVG--------------------------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSV 570 (733)
T ss_pred H----HHhhcccC--------------------------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccH
Confidence 1 11111100 11223333333444557799999998642 0
Q ss_pred ---HHHHHHHhcCC--CCCCcEEEEEccchhHHhhh--ccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHH
Q 048733 308 ---FWRDVEHALLD--NKKCSRIIVTTRHMNVAKFC--KLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKE 380 (887)
Q Consensus 308 ---~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~--~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~ 380 (887)
...++...+.. ...+--||.||......... ....-...+.++..+.++-.++|....-+... ....+
T Consensus 571 ~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~--~~~~~--- 645 (733)
T TIGR01243 571 TDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL--AEDVD--- 645 (733)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC--CccCC---
Confidence 11223333332 22344455566554433211 11112267888888988888888766532211 11111
Q ss_pred HHHHHHHHhCCCc
Q 048733 381 LSQDILAKCGGLP 393 (887)
Q Consensus 381 ~~~~I~~~c~G~P 393 (887)
...+++.+.|.-
T Consensus 646 -l~~la~~t~g~s 657 (733)
T TIGR01243 646 -LEELAEMTEGYT 657 (733)
T ss_pred -HHHHHHHcCCCC
Confidence 355777777744
No 195
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.07 E-value=6e-05 Score=83.62 Aligned_cols=105 Identities=26% Similarity=0.276 Sum_probs=77.4
Q ss_pred HHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcC
Q 048733 708 KELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKL 786 (887)
Q Consensus 708 ~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l 786 (887)
..|.-++.|+.|+++.|.... ...+..+++|++|+|++|..... +.+.+-...|+.|.|+||. ..+- .+.+|
T Consensus 181 ~SLqll~ale~LnLshNk~~~---v~~Lr~l~~LkhLDlsyN~L~~v---p~l~~~gc~L~~L~lrnN~l~tL~-gie~L 253 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTK---VDNLRRLPKLKHLDLSYNCLRHV---PQLSMVGCKLQLLNLRNNALTTLR-GIENL 253 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhh---hHHHHhcccccccccccchhccc---cccchhhhhheeeeecccHHHhhh-hHHhh
Confidence 446667888999998754433 34778889999999998865443 3444333479999999975 3443 67889
Q ss_pred CCcceeEEEecccCC----cCcCcCcccceeeeCcCC
Q 048733 787 KNLIGSRLILSGLTE----DPISWFPKLRKLVLLNFE 819 (887)
Q Consensus 787 ~~L~~L~L~~~~l~~----~~~~~~~~L~~L~l~~~~ 819 (887)
.+|..|+|++|-+.+ .+++.+..|+.|.|.+++
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 999999999998765 356678888888888876
No 196
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.03 E-value=0.0054 Score=73.80 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=37.4
Q ss_pred cCccccchhcHHHHHHHHhcC-----------CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 170 DDEVVGIESIKDKLIDLMLNG-----------RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-+++.|.+..++++.+++... -...+-+.++|++|+|||+||+.+++.
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 345889999999988876421 123456889999999999999999984
No 197
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.03 E-value=0.005 Score=61.67 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=29.1
Q ss_pred EEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEe
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV 232 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 232 (887)
.++|+|..|+|||||+..+..+ ....|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 5779999999999999999874 6778877777754
No 198
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.02 E-value=0.0025 Score=67.21 Aligned_cols=118 Identities=15% Similarity=0.206 Sum_probs=66.1
Q ss_pred cchhcHHHHHHHHhcCC--CCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhc
Q 048733 175 GIESIKDKLIDLMLNGR--SKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRL 252 (887)
Q Consensus 175 Gr~~~~~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 252 (887)
+|........+++..-. ...+-+.|+|..|+|||.||..+++... ...+ .+.++++ .+++.++...+...
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEH------HHHHHHHHHHHhcC
Confidence 44444555555655321 1345688999999999999999999632 2223 3455554 34555554443211
Q ss_pred cCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCC--hhHHHH--HHHhcC-CC-CCCcEEE
Q 048733 253 SKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWK--IDFWRD--VEHALL-DN-KKCSRII 326 (887)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~--l~~~l~-~~-~~gs~ii 326 (887)
+.... + +.+ .+-=||||||+.. ...|.. +...+. .. ..+-.+|
T Consensus 207 --------------------------~~~~~---l-~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti 255 (306)
T PRK08939 207 --------------------------SVKEK---I-DAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTF 255 (306)
T ss_pred --------------------------cHHHH---H-HHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEE
Confidence 11222 2 222 2456899999953 456653 444332 22 2345678
Q ss_pred EEccc
Q 048733 327 VTTRH 331 (887)
Q Consensus 327 vTtR~ 331 (887)
+||-.
T Consensus 256 ~TSNl 260 (306)
T PRK08939 256 FTSNF 260 (306)
T ss_pred EECCC
Confidence 88764
No 199
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.01 E-value=0.0041 Score=66.19 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=47.7
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCce-eEEEEeCCC-CCHHHHHHHHHHHHhh
Q 048733 179 IKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSC-RAWVTVGKE-YNKNDLLRTIIKEFHR 251 (887)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~-~~~~~~~~~i~~~l~~ 251 (887)
...++++.+..-.. ..-+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+. .++.++++.+...+..
T Consensus 119 ~~~RvID~l~PiGk-GQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIGK-GQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecCC-CceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 44567887775322 23568999999999999999888421 122233 467777654 5678888888765543
No 200
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.99 E-value=0.0033 Score=63.78 Aligned_cols=50 Identities=18% Similarity=0.088 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEE
Q 048733 180 KDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT 231 (887)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 231 (887)
+..+.++...-......+.++|.+|+|||+||..+++... ..-..+++++
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it 134 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT 134 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE
Confidence 3344444433222234788999999999999999999532 2223445554
No 201
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.97 E-value=0.011 Score=57.18 Aligned_cols=44 Identities=27% Similarity=0.337 Sum_probs=36.6
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
.++||-++.++++.-+..+++ .+-+.|.||+|+||||=+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 578999999999887766654 66788999999999997777666
No 202
>PRK12377 putative replication protein; Provisional
Probab=96.97 E-value=0.0043 Score=63.13 Aligned_cols=37 Identities=27% Similarity=0.191 Sum_probs=27.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEe
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV 232 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 232 (887)
...+.|+|.+|+|||.||..+++.. ......++++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~ 137 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTV 137 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEH
Confidence 3578899999999999999999953 233334566654
No 203
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.023 Score=58.97 Aligned_cols=203 Identities=14% Similarity=0.205 Sum_probs=112.0
Q ss_pred CccccchhcHHHHHHHHhcC-----------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHH
Q 048733 171 DEVVGIESIKDKLIDLMLNG-----------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKN 239 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (887)
..+=|-++.+++|.+.+.-+ -.+.+=|.++|++|.|||-||++|++. ....| +.|..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Irvvg----- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVG----- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEecc-----
Confidence 35667898888888776431 134566789999999999999999994 44444 33322
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCC-CceEEEEeccCCh------------
Q 048733 240 DLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKD-KSYMVVLDDVWKI------------ 306 (887)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~~~------------ 306 (887)
.++++..-+. -..++..+-+..+. .+..|++|.++..
T Consensus 219 ---SElVqKYiGE---------------------------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gD 268 (406)
T COG1222 219 ---SELVQKYIGE---------------------------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGD 268 (406)
T ss_pred ---HHHHHHHhcc---------------------------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCch
Confidence 1233332221 12344444444444 6789999998753
Q ss_pred -h---HHHHHHHhcCC--CCCCcEEEEEccchhHHhh--hccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHH
Q 048733 307 -D---FWRDVEHALLD--NKKCSRIIVTTRHMNVAKF--CKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSEL 378 (887)
Q Consensus 307 -~---~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~--~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~ 378 (887)
+ ..-++..-+.. ....-|||..|-..++... .....-.+.++++.-+.+.-.++|.-++-.-.- ...-++
T Consensus 269 rEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l--~~dvd~ 346 (406)
T COG1222 269 REVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL--ADDVDL 346 (406)
T ss_pred HHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC--ccCcCH
Confidence 1 12233333432 2345788887776555432 222222367788744555555667666533221 111222
Q ss_pred HHHHHHHHHHhCCCc----hHHHHHhhhhcCCCC----CHHHHHHHHHHhc
Q 048733 379 KELSQDILAKCGGLP----LAIVAVGGLLSTKNR----IVSEWKKLFDRLG 421 (887)
Q Consensus 379 ~~~~~~I~~~c~G~P----Lai~~~~~~l~~~~~----~~~~w~~~~~~~~ 421 (887)
+.|++.|.|.- -|+.+=|++++-+.. +.+++....++..
T Consensus 347 ----e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 347 ----ELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred ----HHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 34666666644 345555555532221 4555655555543
No 204
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.95 E-value=0.014 Score=71.02 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=37.5
Q ss_pred CccccchhcHHHHHHHHhcC-------CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNG-------RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|.+..++.|...+... +.+..++.++|+.|+|||+||+.+++.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999988877632 223357889999999999999999873
No 205
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0074 Score=61.29 Aligned_cols=82 Identities=16% Similarity=0.334 Sum_probs=50.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCc--cCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGL--KTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPT 271 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 271 (887)
-++|.++|++|.|||+|.+..++...+ ..+|....-+.+.. ..++.. .++..
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSK---WFsES------------------- 230 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSK---WFSES------------------- 230 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHH---HHhhh-------------------
Confidence 379999999999999999999997433 34444444444332 112211 11111
Q ss_pred ccccccCCHHHHHHHHHHHhCCCc--eEEEEeccCCh
Q 048733 272 PEEIHNMEETDLITTLRDHLKDKS--YMVVLDDVWKI 306 (887)
Q Consensus 272 ~~~~~~~~~~~l~~~l~~~L~~kr--~LlVlDdv~~~ 306 (887)
..-...+.+.|.+.+.++. +++.+|.|+..
T Consensus 231 -----gKlV~kmF~kI~ELv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 231 -----GKLVAKMFQKIQELVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred -----hhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHH
Confidence 1134566777777777655 45567888654
No 206
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.94 E-value=0.0023 Score=62.58 Aligned_cols=53 Identities=23% Similarity=0.149 Sum_probs=36.0
Q ss_pred cchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEE
Q 048733 175 GIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT 231 (887)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 231 (887)
.+..+....++.|.. ..++.+.|++|.|||.||...+-+.-..+.|+..+++.
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 345556667777774 34899999999999999998887644557888877774
No 207
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.92 E-value=0.032 Score=60.31 Aligned_cols=78 Identities=17% Similarity=0.263 Sum_probs=50.5
Q ss_pred chhcHHHHHHHHhcCC-CCcEEEEEEccCCCCHHHHHHHHhcccCcc--CCCc---eeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 176 IESIKDKLIDLMLNGR-SKRSVVAVVGEGGLGKTTLAGKLFNNEGLK--THFS---CRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 176 r~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~F~---~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
|+...+.|.+.+...+ ....+|+|.|.=|+||||+.+.+.+..+.. ..+. .-+|-......-...++.+|..++
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 3445677888887754 567899999999999999999998853333 1121 122443333333556677777777
Q ss_pred hhcc
Q 048733 250 HRLS 253 (887)
Q Consensus 250 ~~~~ 253 (887)
....
T Consensus 81 ~~~~ 84 (325)
T PF07693_consen 81 EKHF 84 (325)
T ss_pred HHhc
Confidence 6543
No 208
>PRK08181 transposase; Validated
Probab=96.92 E-value=0.0044 Score=63.91 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.1
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+.|+|++|+|||.||..+.+.
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~ 129 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA 129 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH
Confidence 5889999999999999999874
No 209
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.016 Score=64.02 Aligned_cols=96 Identities=19% Similarity=0.310 Sum_probs=64.8
Q ss_pred cCccccchhcHHHHHHHHhcC----------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNG----------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKN 239 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (887)
-.++=|.+..+.+|.+++..- -.+.+=|.++|++|.|||.||+.+++. ..-.| +.++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecch----
Confidence 346778999998888776531 123456789999999999999999994 33333 333221
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh
Q 048733 240 DLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI 306 (887)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~ 306 (887)
+|+..+ ...+++.+.+.+.+.-...++++++|+++..
T Consensus 258 ----eivSGv--------------------------SGESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 ----EIVSGV--------------------------SGESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ----hhhccc--------------------------CcccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 122221 2234566666777777789999999999754
No 210
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.039 Score=58.96 Aligned_cols=107 Identities=16% Similarity=0.195 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHh-----CCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEEEccc-hhHHhhhccCCCcceeec
Q 048733 278 MEETDLITTLRDHL-----KDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIVTTRH-MNVAKFCKLSSSVRIHEL 349 (887)
Q Consensus 278 ~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~~~~~~~~~~l 349 (887)
+..+++.+. .+.+ .+++=++|+|+++.+ ..+..+...+-....++.+|++|.+ ..+..... +....+.+
T Consensus 112 I~idqiR~l-~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~--SRcq~i~~ 188 (342)
T PRK06964 112 IKIEQVRAL-LDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTIL--SRCRQFPM 188 (342)
T ss_pred cCHHHHHHH-HHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHH--hcCEEEEe
Confidence 445555443 3333 244558899999765 5788898888776667766665555 43332222 22278999
Q ss_pred CCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHh
Q 048733 350 ETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVG 400 (887)
Q Consensus 350 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 400 (887)
.+++.++..+.+.... . .+ ...++..++|.|..+..+.
T Consensus 189 ~~~~~~~~~~~L~~~~--~------~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 189 TVPAPEAAAAWLAAQG--V------AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred cCCCHHHHHHHHHHcC--C------Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 9999999999887741 1 11 1235778899997655443
No 211
>PRK06526 transposase; Provisional
Probab=96.86 E-value=0.0021 Score=65.96 Aligned_cols=23 Identities=39% Similarity=0.325 Sum_probs=20.5
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+.|+|++|+|||+||..+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 35889999999999999999875
No 212
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.86 E-value=0.0028 Score=68.22 Aligned_cols=138 Identities=16% Similarity=0.180 Sum_probs=67.4
Q ss_pred HHhhccccccceeEEeccCChhHHHHHHhccc-CCcEEEEeecCCccccccCcccccccccceeEEeecc--CCCChhhh
Q 048733 708 KELMMLRQLNMLSIRRQNGNGRDLCALIANLE-NVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM--KKLPDWIL 784 (887)
Q Consensus 708 ~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~-~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--~~lp~~~~ 784 (887)
..+..+++++.|+++.. ....+| .++ +|++|.+.+|..... ++.. .|.+|+.|++++|. ..+|
T Consensus 46 ~r~~~~~~l~~L~Is~c--~L~sLP----~LP~sLtsL~Lsnc~nLts--LP~~--LP~nLe~L~Ls~Cs~L~sLP---- 111 (426)
T PRK15386 46 PQIEEARASGRLYIKDC--DIESLP----VLPNELTEITIENCNNLTT--LPGS--IPEGLEKLTVCHCPEISGLP---- 111 (426)
T ss_pred HHHHHhcCCCEEEeCCC--CCcccC----CCCCCCcEEEccCCCCccc--CCch--hhhhhhheEccCcccccccc----
Confidence 33555677777777642 222222 232 577777766543222 1111 22377777777652 3344
Q ss_pred cCCCcceeEEEecccCCcCcCcCcccceeeeCcCCCceeEEEcCCCc-cCccEEEEccCCCCCccccccccCCCCCEEEE
Q 048733 785 KLKNLIGSRLILSGLTEDPISWFPKLRKLVLLNFEAVKSVIIEKGAM-PDIRELWIGPCPLLMEIPIGIDHLRNLELLTF 863 (887)
Q Consensus 785 ~l~~L~~L~L~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l-p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 863 (887)
++|+.|++.++..... ..-.++|+.|.+.++.....+... ..+ ++|+.|.+++|..+ .+|..+. .+|+.|.+
T Consensus 112 --~sLe~L~L~~n~~~~L-~~LPssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 112 --ESVRSLEIKGSATDSI-KNVPNGLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred --cccceEEeCCCCCccc-ccCcchHhheeccccccccccccc-cccCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 2355555554432211 111235666665432211111100 123 46888888888744 3444332 57777777
Q ss_pred Eec
Q 048733 864 HDM 866 (887)
Q Consensus 864 ~~c 866 (887)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 654
No 213
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.01 Score=64.22 Aligned_cols=143 Identities=16% Similarity=0.121 Sum_probs=81.4
Q ss_pred ccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccC-------------------CCceeEEEEe
Q 048733 172 EVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKT-------------------HFSCRAWVTV 232 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~v 232 (887)
.++|-+....++..+..........+.++|++|+||||+|..+++...-.. .+..+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 456777788888888775443334589999999999999999988521111 1122233333
Q ss_pred CCCCC---HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh--
Q 048733 233 GKEYN---KNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID-- 307 (887)
Q Consensus 233 ~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-- 307 (887)
+.... ..+..+++.+...... ..++.-++++|+++...
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~-------------------------------------~~~~~kviiidead~mt~~ 124 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP-------------------------------------LEGGYKVVIIDEADKLTED 124 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC-------------------------------------CCCCceEEEeCcHHHHhHH
Confidence 32222 1222222222211100 02567799999998763
Q ss_pred HHHHHHHhcCCCCCCcEEEEEccch-hHHhhhccCCCcceeecCCCC
Q 048733 308 FWRDVEHALLDNKKCSRIIVTTRHM-NVAKFCKLSSSVRIHELETLP 353 (887)
Q Consensus 308 ~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~~l~~L~ 353 (887)
.-..+...+......+++|++|... .+.... .+....+.+.+.+
T Consensus 125 A~nallk~lEep~~~~~~il~~n~~~~il~tI--~SRc~~i~f~~~~ 169 (325)
T COG0470 125 AANALLKTLEEPPKNTRFILITNDPSKILPTI--RSRCQRIRFKPPS 169 (325)
T ss_pred HHHHHHHHhccCCCCeEEEEEcCChhhccchh--hhcceeeecCCch
Confidence 5566666776667778888887743 222211 1223566776633
No 214
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.83 E-value=0.00027 Score=69.49 Aligned_cols=243 Identities=19% Similarity=0.158 Sum_probs=127.3
Q ss_pred CCceeEEEeecCCCCC--ccccccccCCCceeEEEEecCCCCC----CCc-------cccccccccceeecCCCceeeec
Q 048733 571 DSKVRSVILFNVDKLP--DSFVKSCIANFKLMKVLDLEDSPIN----YLP-------EGVGNLFNLHLLNARNTKILDLA 637 (887)
Q Consensus 571 ~~~lrsL~~~~~~~~~--~~~~~~~~~~~~~Lr~L~L~~~~l~----~lp-------~~i~~L~~L~~L~L~~~~~Ldl~ 637 (887)
...+..+.++++...+ ...+...+.+-++|++.++++.... ++| +.+-++++|+..+|+.|- ++
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA---fg 105 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA---FG 105 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc---cC
Confidence 5566677777776542 2234455667777888777765322 223 234466777777766653 11
Q ss_pred CccccccchhhhcccccCeeeecccccccccccchhhhhhccC-CccccccccccccccccCceecchHHHHHhhccccc
Q 048733 638 HTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHR-GFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQL 716 (887)
Q Consensus 638 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~-~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L 716 (887)
......|-..|.+-+.|.||.+++|. ...+.. .|| +.|++|. .+ +...+-+.|
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG-----------lGp~aG~rig--kal~~la------~n-------KKaa~kp~L 159 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG-----------LGPIAGGRIG--KALFHLA------YN-------KKAADKPKL 159 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC-----------CCccchhHHH--HHHHHHH------HH-------hhhccCCCc
Confidence 11122233345567778888888772 111110 011 1122221 11 112233445
Q ss_pred cceeEEecc---CChhHHHHHHhcccCCcEEEEeecCCccc----cccCcccccccccceeEEeecc-C-----CCChhh
Q 048733 717 NMLSIRRQN---GNGRDLCALIANLENVETLGVLMKSKEEI----LDLQSLSSPPQHLQYLSLRGNM-K-----KLPDWI 783 (887)
Q Consensus 717 ~~L~l~~~~---~~~~~l~~~l~~~~~L~~L~l~~~~~~~~----~~l~~l~~~~~~L~~L~L~~~~-~-----~lp~~~ 783 (887)
+......|. .........+....+|+.+.+..|..... ..+..+... ++|+.|+|..|. . .+...+
T Consensus 160 e~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~-~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 160 EVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred eEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHh-CcceeeeccccchhhhhHHHHHHHh
Confidence 554433221 12222333444445788888877754322 111222222 378888887753 1 111122
Q ss_pred hcCCCcceeEEEecccCCcCcC---------cCcccceeeeCcCCCceeE-------EEcCCCccCccEEEEccCC
Q 048733 784 LKLKNLIGSRLILSGLTEDPIS---------WFPKLRKLVLLNFEAVKSV-------IIEKGAMPDIRELWIGPCP 843 (887)
Q Consensus 784 ~~l~~L~~L~L~~~~l~~~~~~---------~~~~L~~L~l~~~~~l~~~-------~~~~~~lp~L~~L~l~~c~ 843 (887)
..-++|+.|.+.+|-+...... .+|+|..|.+.++..-..+ .++-+++|-|..|.+.+|.
T Consensus 239 ~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 239 CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 2235588888888877654322 6788888888776542222 1234678999999988887
No 215
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.81 E-value=0.0011 Score=47.02 Aligned_cols=35 Identities=23% Similarity=0.418 Sum_probs=25.7
Q ss_pred cCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 832 PDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 832 p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
|+|++|++++|. ++.+|..+.+|++|+.|++++|+
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 567888888775 66777777888888888888886
No 216
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.81 E-value=0.35 Score=52.37 Aligned_cols=220 Identities=13% Similarity=0.130 Sum_probs=117.8
Q ss_pred chhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHH-HHHhcccCccCCCceeEEEEeCCC---CCHHHHHHHHHHHHhh
Q 048733 176 IESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLA-GKLFNNEGLKTHFSCRAWVTVGKE---YNKNDLLRTIIKEFHR 251 (887)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~v~~~---~~~~~~~~~i~~~l~~ 251 (887)
|.+..++|..||.+.. -..|.|.|+-|+||+.|+ .++.++.+. +..+++.+- .+-..++..++.+++-
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 5677899999999865 458999999999999999 777775221 334433221 1222333333333321
Q ss_pred ccCC--------CCCCCCCCCCCCCCCCccccccCCHHHHHHH-------HHH-------------------HhC---CC
Q 048733 252 LSKH--------GRDGPDRHAEGPLLPTPEEIHNMEETDLITT-------LRD-------------------HLK---DK 294 (887)
Q Consensus 252 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------l~~-------------------~L~---~k 294 (887)
-..- .-+.......|+-.++.+ ....++... |++ +|+ .+
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSe----s~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSE----SLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCC----ChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 0000 000000000010011111 111111111 111 111 23
Q ss_pred ceEEEEeccCCh-----hHHHH---HHHhcCCCCCCcEEEEEccchhHHhhhc---cCCCcceeecCCCChhhHHHHHHH
Q 048733 295 SYMVVLDDVWKI-----DFWRD---VEHALLDNKKCSRIIVTTRHMNVAKFCK---LSSSVRIHELETLPPDEAWKLFCR 363 (887)
Q Consensus 295 r~LlVlDdv~~~-----~~~~~---l~~~l~~~~~gs~iivTtR~~~v~~~~~---~~~~~~~~~l~~L~~~e~~~lf~~ 363 (887)
+-+||+|+.-.. --|+. +...+-. .+-.+||++|-+........ .......+.|.-.+.+.|..+..+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 679999998432 12222 2223333 33567888887765444322 223457889999999999999999
Q ss_pred hhcCCCCC---------C---CC---ChHHHHHHHHHHHHhCCCchHHHHHhhhhcCCCC
Q 048733 364 KAFGPSSG---------G---CC---PSELKELSQDILAKCGGLPLAIVAVGGLLSTKNR 408 (887)
Q Consensus 364 ~~~~~~~~---------~---~~---~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~~ 408 (887)
+.-..... . .. ...........++.+||=-.-+..+++.++....
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~ 287 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGES 287 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCC
Confidence 87543110 0 00 0123444566778889988888888888887554
No 217
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.80 E-value=0.0044 Score=62.95 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHH
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKND 240 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (887)
.|.++|..+=....++.|+|.+|+|||++|.+++... ...-..++|++.. .++...
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHH
Confidence 3555555554457899999999999999999998742 2234567899876 555543
No 218
>PRK09183 transposase/IS protein; Provisional
Probab=96.79 E-value=0.0044 Score=63.97 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+.|+|++|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 36779999999999999999764
No 219
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.74 E-value=0.012 Score=59.91 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccC----CCceeEEEEeCCCCCHHHH
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKT----HFSCRAWVTVGKEYNKNDL 241 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~ 241 (887)
.|.++|..+-....++.|+|.+|+|||+||.+++......+ .=..++|++....++...+
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl 70 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL 70 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH
Confidence 34445544444567999999999999999999876421111 1145789988777765444
No 220
>PRK07261 topology modulation protein; Provisional
Probab=96.73 E-value=0.0035 Score=60.39 Aligned_cols=22 Identities=45% Similarity=0.672 Sum_probs=19.7
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 221
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.73 E-value=0.064 Score=63.75 Aligned_cols=47 Identities=19% Similarity=0.233 Sum_probs=37.9
Q ss_pred CccccchhcHHHHHHHHhcC-------CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNG-------RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|.++.++.|.+.+... ..+...+.++|++|+|||++|+.++..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~ 511 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999998887631 223567899999999999999999884
No 222
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.72 E-value=0.062 Score=60.68 Aligned_cols=168 Identities=11% Similarity=0.078 Sum_probs=104.3
Q ss_pred CccccchhcHHHHHHHHhcC--C-CCcEEEEEEccCCCCHHHHHHHHhcccC------ccCCCceeEEEEeCCCCCHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNG--R-SKRSVVAVVGEGGLGKTTLAGKLFNNEG------LKTHFSCRAWVTVGKEYNKNDL 241 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~--~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~wv~v~~~~~~~~~ 241 (887)
..+-+||.+..+|..++... + +..+.+.|.|-+|+|||..+..|.+..+ .-..|. .+.|+.-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 34668999999999888752 2 3456899999999999999999988421 223343 244454555678899
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhC-----CCceEEEEeccCChhH--HHHHHH
Q 048733 242 LRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLK-----DKSYMVVLDDVWKIDF--WRDVEH 314 (887)
Q Consensus 242 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-----~kr~LlVlDdv~~~~~--~~~l~~ 314 (887)
+..|..++.+... ....-.+.+..+.. .+..+|++|+++..-. -+-+..
T Consensus 475 Y~~I~~~lsg~~~------------------------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn 530 (767)
T KOG1514|consen 475 YEKIWEALSGERV------------------------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYN 530 (767)
T ss_pred HHHHHHhcccCcc------------------------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHH
Confidence 9999998876432 33444555555543 3568899999865421 122333
Q ss_pred hcC-CCCCCcEEEEEc-cch----------hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcC
Q 048733 315 ALL-DNKKCSRIIVTT-RHM----------NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFG 367 (887)
Q Consensus 315 ~l~-~~~~gs~iivTt-R~~----------~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~ 367 (887)
.|. ...++|+++|-+ -+. .++..+ ....+...|-+.++-.++...+..+
T Consensus 531 ~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRl----g~tRi~F~pYth~qLq~Ii~~RL~~ 591 (767)
T KOG1514|consen 531 IFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRL----GLTRICFQPYTHEQLQEIISARLKG 591 (767)
T ss_pred HhcCCcCCCCceEEEEecccccCHHHHhccchhhhc----cceeeecCCCCHHHHHHHHHHhhcc
Confidence 343 345577775532 221 112222 2256677777777777766666533
No 223
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.70 E-value=0.0093 Score=59.79 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=38.9
Q ss_pred HHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHH
Q 048733 186 LMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLL 242 (887)
Q Consensus 186 ~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 242 (887)
+|..+=...+++.|+|++|+|||+++.+++.. .......++|++... ++...+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHH
Confidence 34444445689999999999999999998874 223346788998875 6654443
No 224
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.031 Score=62.63 Aligned_cols=160 Identities=18% Similarity=0.200 Sum_probs=87.8
Q ss_pred cccCccccchhcHHHHHHHHhc-----------CCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCC
Q 048733 168 VEDDEVVGIESIKDKLIDLMLN-----------GRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEY 236 (887)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 236 (887)
+.-+++=|.|+-+.+|-+.+.- +-...+-|..+|++|.|||++|+.+++. .+-.| +.+...
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp- 502 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP- 502 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH-
Confidence 3334555677766666554432 1135677889999999999999999993 44454 222211
Q ss_pred CHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh---------
Q 048733 237 NKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID--------- 307 (887)
Q Consensus 237 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--------- 307 (887)
+ ++.... ..++..+.+.+++.=+-.+.+|.||.++...
T Consensus 503 ---E----L~sk~v--------------------------GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~ 549 (693)
T KOG0730|consen 503 ---E----LFSKYV--------------------------GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSG 549 (693)
T ss_pred ---H----HHHHhc--------------------------CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccc
Confidence 1 111111 1123444444554445567889999886531
Q ss_pred ----HHHHHHHhcCCCCCCcEEEE---EccchhHHhh-hccCCCcceeecCCCChhhHHHHHHHhhcCC
Q 048733 308 ----FWRDVEHALLDNKKCSRIIV---TTRHMNVAKF-CKLSSSVRIHELETLPPDEAWKLFCRKAFGP 368 (887)
Q Consensus 308 ----~~~~l~~~l~~~~~gs~iiv---TtR~~~v~~~-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~ 368 (887)
...+++.-+........|+| |.|...+-.. +........+.+++=+.+.-.++|+.++-+.
T Consensus 550 v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 550 VTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred hHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 12222222322222223433 5555444332 2322234677787777777788999887443
No 225
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.021 Score=61.96 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=35.7
Q ss_pred Cccccch---hcHHHHHHHHhcCC-------CCcEEEEEEccCCCCHHHHHHHHhccc
Q 048733 171 DEVVGIE---SIKDKLIDLMLNGR-------SKRSVVAVVGEGGLGKTTLAGKLFNNE 218 (887)
Q Consensus 171 ~~~vGr~---~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 218 (887)
.++-|-| .|+++|+++|.++. .-.+=|.++|++|.|||-||++|+-..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 3556765 45667788887642 224568899999999999999999853
No 226
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.021 Score=60.89 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=43.4
Q ss_pred CCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEEEccchh-HHhhhccCCCcceeecCCCChhhHHHHHHHh
Q 048733 293 DKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIVTTRHMN-VAKFCKLSSSVRIHELETLPPDEAWKLFCRK 364 (887)
Q Consensus 293 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~ 364 (887)
+++-++|+|++... ..-..+...+.....++.+|++|.+.. +...+. +....+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~--SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIK--SRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHH--HHhhhhcCCCCCHHHHHHHHHhc
Confidence 34445566888655 345556655554444566777776643 332222 22278899999999998888664
No 227
>PRK06921 hypothetical protein; Provisional
Probab=96.62 E-value=0.011 Score=61.20 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=27.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCC-CceeEEEEe
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTH-FSCRAWVTV 232 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~v 232 (887)
...+.++|..|+|||.||..+++. .... ...+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 457889999999999999999985 3222 334566653
No 228
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.62 E-value=0.0016 Score=68.91 Aligned_cols=46 Identities=17% Similarity=0.426 Sum_probs=40.3
Q ss_pred ccccchhcHHHHHHHHhcC----CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 172 EVVGIESIKDKLIDLMLNG----RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|.++.++++++++... +...+++.++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999998763 334689999999999999999999885
No 229
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.60 E-value=0.064 Score=53.57 Aligned_cols=238 Identities=16% Similarity=0.188 Sum_probs=125.4
Q ss_pred cccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhccc----CccCCCceeEEEEeCCCC-CHHHHHHHHHH
Q 048733 173 VVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNE----GLKTHFSCRAWVTVGKEY-NKNDLLRTIIK 247 (887)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~v~~~~-~~~~~~~~i~~ 247 (887)
+.++++...++......+ ....+.++|+.|.||-|.+..+.+.. -.+-+-+...|.+.+... .+..+
T Consensus 15 l~~~~e~~~~Lksl~~~~--d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistv------ 86 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTG--DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTV------ 86 (351)
T ss_pred cccHHHHHHHHHHhcccC--CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEe------
Confidence 667777777777766533 36778899999999999776665531 112223344455443320 00000
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-------CC-Cce-EEEEeccCCh--hHHHHHHHhc
Q 048733 248 EFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-------KD-KSY-MVVLDDVWKI--DFWRDVEHAL 316 (887)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-------~~-kr~-LlVlDdv~~~--~~~~~l~~~l 316 (887)
. ...+ .+-.|.+....+.--+++.+++.- .+ +.| ++|+-.++.. ++-..++..+
T Consensus 87 --s---------S~yH----lEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTM 151 (351)
T KOG2035|consen 87 --S---------SNYH----LEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTM 151 (351)
T ss_pred --c---------ccce----EEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHH
Confidence 0 0000 001111112222222223333222 12 344 5566666543 4445555555
Q ss_pred CCCCCCcEEEEE----ccch-hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCC
Q 048733 317 LDNKKCSRIIVT----TRHM-NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGG 391 (887)
Q Consensus 317 ~~~~~gs~iivT----tR~~-~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G 391 (887)
..-...+|+|+. ||.- .+-+.| -.+.+...+++|....+++.+-..+- . .+ .+++++|+++++|
T Consensus 152 EkYs~~~RlIl~cns~SriIepIrSRC------l~iRvpaps~eeI~~vl~~v~~kE~l--~-lp--~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 152 EKYSSNCRLILVCNSTSRIIEPIRSRC------LFIRVPAPSDEEITSVLSKVLKKEGL--Q-LP--KELLKRIAEKSNR 220 (351)
T ss_pred HHHhcCceEEEEecCcccchhHHhhhe------eEEeCCCCCHHHHHHHHHHHHHHhcc--c-Cc--HHHHHHHHHHhcc
Confidence 544556777773 3332 222222 57889999999999999887643321 1 12 7889999999999
Q ss_pred CchHHHHHhhhhcCC---------CCCHHHHHHHHHHhccccCCCCCccchHHHHhhcccCC
Q 048733 392 LPLAIVAVGGLLSTK---------NRIVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYYDL 444 (887)
Q Consensus 392 ~PLai~~~~~~l~~~---------~~~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~L 444 (887)
+---...+-..++-+ ....-+|+-...+.............+..+-..=|+-|
T Consensus 221 nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 221 NLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred cHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 654333222222211 11235899888887766555544455555544445433
No 230
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.59 E-value=0.016 Score=56.57 Aligned_cols=48 Identities=27% Similarity=0.443 Sum_probs=36.4
Q ss_pred ccCccccchhcHHHHHHHHh---cCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 169 EDDEVVGIESIKDKLIDLML---NGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+=..++|.|..++.+++--. .+- +..-|.+||.-|+||++|++++.+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~-pANnVLLwGaRGtGKSSLVKA~~~e 108 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGL-PANNVLLWGARGTGKSSLVKALLNE 108 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCC-cccceEEecCCCCChHHHHHHHHHH
Confidence 34568999999988876432 232 2345779999999999999999883
No 231
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.59 E-value=0.015 Score=58.74 Aligned_cols=55 Identities=24% Similarity=0.221 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCC
Q 048733 181 DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYN 237 (887)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 237 (887)
..|.++|..+=....++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 3455555544445789999999999999999998874 222234567887655443
No 232
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.59 E-value=0.039 Score=62.05 Aligned_cols=47 Identities=26% Similarity=0.371 Sum_probs=32.7
Q ss_pred CccccchhcHHHHHHHHh---c-----CCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLML---N-----GRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~---~-----~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+++.|.+..++.+.+... . +-...+-|.++|++|.|||.+|+.+++.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 456787766665554221 1 1123466889999999999999999984
No 233
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.58 E-value=0.0025 Score=61.57 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=24.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEE
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT 231 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 231 (887)
..-+.|+|.+|+|||.||..+.+... ...+ .+.|++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~-~~g~-~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI-RKGY-SVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH-HTT---EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc-cCCc-ceeEee
Confidence 34688999999999999999988522 2222 355665
No 234
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.58 E-value=0.0032 Score=58.32 Aligned_cols=44 Identities=30% Similarity=0.313 Sum_probs=31.5
Q ss_pred ccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 174 VGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
||....++++.+.+..-.....-|.|.|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 57777777777776653222345789999999999999998885
No 235
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.56 E-value=0.01 Score=63.24 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=26.6
Q ss_pred EEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEe
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV 232 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 232 (887)
..+.++|.+|+|||.||..+++... ..-..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEH
Confidence 5688999999999999999998532 22234556554
No 236
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.56 E-value=0.0082 Score=61.51 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=43.5
Q ss_pred HHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccC----CCceeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 183 LIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKT----HFSCRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
|.+.|..+=....++.|+|.+|+|||+||.+++-...... ....++|++....++..++ .++++..
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~ 77 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERF 77 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHh
Confidence 3444444444568999999999999999999975322222 1357889998877765444 3444443
No 237
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.057 Score=62.49 Aligned_cols=179 Identities=15% Similarity=0.193 Sum_probs=99.2
Q ss_pred CccccchhcHHH---HHHHHhcCC-------CCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHH
Q 048733 171 DEVVGIESIKDK---LIDLMLNGR-------SKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKND 240 (887)
Q Consensus 171 ~~~vGr~~~~~~---l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (887)
.++.|-++.+++ ++++|.+++ .-++=+.++|++|.|||-||++++-... +-|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH-----
Confidence 467787765555 555665532 2245577999999999999999998422 234454432
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--------------
Q 048733 241 LLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI-------------- 306 (887)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-------------- 306 (887)
+.++.+.+. ....+.+.+...=...+.++.+|+++..
T Consensus 379 ---EFvE~~~g~--------------------------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~ 429 (774)
T KOG0731|consen 379 ---EFVEMFVGV--------------------------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQD 429 (774)
T ss_pred ---HHHHHhccc--------------------------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCCh
Confidence 122222111 0111122222222456788888887643
Q ss_pred ---hHHHHHHHhcCCCCCCcEEEE--EccchhHHhh--hccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHH
Q 048733 307 ---DFWRDVEHALLDNKKCSRIIV--TTRHMNVAKF--CKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELK 379 (887)
Q Consensus 307 ---~~~~~l~~~l~~~~~gs~iiv--TtR~~~v~~~--~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~ 379 (887)
..+.++..-+.....+..||+ +|...++... +....-++.+.++.=+.....++|.-++-... ...+..
T Consensus 430 e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~----~~~e~~ 505 (774)
T KOG0731|consen 430 EREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK----LDDEDV 505 (774)
T ss_pred HHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC----CCcchh
Confidence 123444433333333333433 4554444322 22222236777887788888899998874432 123455
Q ss_pred HHHHHHHHHhCCCchH
Q 048733 380 ELSQDILAKCGGLPLA 395 (887)
Q Consensus 380 ~~~~~I~~~c~G~PLa 395 (887)
++.+ |+..+.|.+=|
T Consensus 506 dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 506 DLSK-LASLTPGFSGA 520 (774)
T ss_pred hHHH-HHhcCCCCcHH
Confidence 6666 88888887744
No 238
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0095 Score=69.18 Aligned_cols=44 Identities=30% Similarity=0.494 Sum_probs=36.0
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
++++||+++++++++.|.....+-+| ++|.+|+|||++|.-++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHH
Confidence 46899999999999999876544333 589999999998776666
No 239
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.49 E-value=0.07 Score=56.40 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 192 SKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.....++|+|++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999995
No 240
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.47 E-value=0.023 Score=53.55 Aligned_cols=58 Identities=7% Similarity=0.105 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCCceEEEEec----cCChhHHHHHHHhcCCCCCCcEEEEEccchhHHhhhc
Q 048733 282 DLITTLRDHLKDKSYMVVLDD----VWKIDFWRDVEHALLDNKKCSRIIVTTRHMNVAKFCK 339 (887)
Q Consensus 282 ~l~~~l~~~L~~kr~LlVlDd----v~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~ 339 (887)
+-.-.|.+.+-+++-+|+=|. ++...+|+-+.-.-.-+..|..||++|.+......+.
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 334456667778899999886 4444466544333334566899999999988877653
No 241
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.45 E-value=0.021 Score=69.38 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=37.5
Q ss_pred CccccchhcHHHHHHHHhcC-------CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNG-------RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|.+..++.|...+... ..+..++.++|+.|+|||+||+.+++.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~ 562 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY 562 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 56899999999998877531 223456789999999999999998873
No 242
>PRK04132 replication factor C small subunit; Provisional
Probab=96.45 E-value=0.069 Score=63.61 Aligned_cols=152 Identities=18% Similarity=0.101 Sum_probs=93.7
Q ss_pred cCCCCHHHHHHHHhcccCccCCC-ceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCH
Q 048733 202 EGGLGKTTLAGKLFNNEGLKTHF-SCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEE 280 (887)
Q Consensus 202 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (887)
|.++||||+|..++++. ....+ ..++-++.++..... .++++++.+..... .
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~-----------------------~-- 626 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKP-----------------------I-- 626 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCC-----------------------c--
Confidence 78899999999999852 12222 234566666544443 44455544432110 0
Q ss_pred HHHHHHHHHHhCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEEEccch-hHHhhhccCCCcceeecCCCChhhH
Q 048733 281 TDLITTLRDHLKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIVTTRHM-NVAKFCKLSSSVRIHELETLPPDEA 357 (887)
Q Consensus 281 ~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~e~ 357 (887)
-..+.-++|||+++.. ++.+.++..+-.....+++|++|.+. .+..... +....+.+.+++.++.
T Consensus 627 ----------~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr--SRC~~i~F~~ls~~~i 694 (846)
T PRK04132 627 ----------GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ--SRCAIFRFRPLRDEDI 694 (846)
T ss_pred ----------CCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh--hhceEEeCCCCCHHHH
Confidence 0124579999999876 46777777776555566776665553 3322221 2237999999999998
Q ss_pred HHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHH
Q 048733 358 WKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIV 397 (887)
Q Consensus 358 ~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 397 (887)
.+.+...+-..+ ..-..+....|++.++|.+-.+.
T Consensus 695 ~~~L~~I~~~Eg-----i~i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 695 AKRLRYIAENEG-----LELTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHHhcC-----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 888876553221 11124677889999999885433
No 243
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.42 E-value=0.0023 Score=57.79 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=20.4
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+|.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999884
No 244
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.014 Score=67.85 Aligned_cols=46 Identities=24% Similarity=0.362 Sum_probs=38.3
Q ss_pred CccccchhcHHHHHHHHhcC-------CCCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 171 DEVVGIESIKDKLIDLMLNG-------RSKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..++|.+..+..+.+.+... ..+..+...+|+.|||||-||+.++.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~ 543 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE 543 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH
Confidence 56899999999999887642 34567888999999999999988876
No 245
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.39 E-value=0.00054 Score=78.88 Aligned_cols=143 Identities=19% Similarity=0.168 Sum_probs=74.6
Q ss_pred HhhccccccceeEEe-ccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeeccC----C-CChh
Q 048733 709 ELMMLRQLNMLSIRR-QNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNMK----K-LPDW 782 (887)
Q Consensus 709 ~l~~l~~L~~L~l~~-~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~----~-lp~~ 782 (887)
....+++|+.|+++. .......+.....++++|+.|.+..... +..++.+.+.+... . ....
T Consensus 290 i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------------c~~l~~~~l~~~~~~~~d~~~~~~ 357 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG------------CPSLTDLSLSGLLTLTSDDLAELI 357 (482)
T ss_pred HHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC------------CccHHHHHHHHhhccCchhHhHHH
Confidence 344677788888876 3333444555556667777765543311 11455555544321 1 1224
Q ss_pred hhcCCCcceeEEEecccCCcCcCcCcccceeeeCcCCCc-eeEEEcCCCccCccEEEEccCCCCCccc-cccc-cCCCCC
Q 048733 783 ILKLKNLIGSRLILSGLTEDPISWFPKLRKLVLLNFEAV-KSVIIEKGAMPDIRELWIGPCPLLMEIP-IGID-HLRNLE 859 (887)
Q Consensus 783 ~~~l~~L~~L~L~~~~l~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~lp~L~~L~l~~c~~l~~lp-~~~~-~l~~L~ 859 (887)
+..+++|+.+.|..+....... .+.+.+|+.+ ..+.......+.|+.|+++.|...+.-- .... .+.++.
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~-------~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~ 430 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGL-------ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLK 430 (482)
T ss_pred HhcCCCcchhhhhhhhccCcch-------HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccc
Confidence 5568888888888877433221 2333344433 1111112223337888888877554211 1111 166777
Q ss_pred EEEEEechhhh
Q 048733 860 LLTFHDMSKQV 870 (887)
Q Consensus 860 ~L~l~~c~~~~ 870 (887)
.+++.+|+...
T Consensus 431 ~l~~~~~~~~~ 441 (482)
T KOG1947|consen 431 DLDLSGCRVIT 441 (482)
T ss_pred cCCccCccccc
Confidence 77777776433
No 246
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.36 E-value=0.016 Score=66.58 Aligned_cols=45 Identities=27% Similarity=0.362 Sum_probs=36.3
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
++++|.+..++.+...+.... ..-+.|+|++|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999987765543 335679999999999999999763
No 247
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.36 E-value=0.069 Score=54.98 Aligned_cols=176 Identities=19% Similarity=0.173 Sum_probs=96.9
Q ss_pred CccccchhcHHHHHHHHhcC--CCCcEEEEEEccCCCCHHHHHHHHhcc-cCccCCCceeEEEEeCCCCCH-HHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNG--RSKRSVVAVVGEGGLGKTTLAGKLFNN-EGLKTHFSCRAWVTVGKEYNK-NDLLRTII 246 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~v~~~~~~-~~~~~~i~ 246 (887)
..++|-.++..++-.++... .++...|.|+|+.|.|||+|...+..+ .++..+| .-|......-. +-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 36789888888888888753 223457889999999999998887776 2233443 34444443322 23455666
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCC------CceEEEEeccCChh--HHHHH-HHhcC
Q 048733 247 KEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKD------KSYMVVLDDVWKID--FWRDV-EHALL 317 (887)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~------kr~LlVlDdv~~~~--~~~~l-~~~l~ 317 (887)
.++....... .....+..+....+-..|+. -++++|+|.++--. .=..+ ...|.
T Consensus 101 rql~~e~~~~-----------------~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfD 163 (408)
T KOG2228|consen 101 RQLALELNRI-----------------VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFD 163 (408)
T ss_pred HHHHHHHhhh-----------------heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHH
Confidence 6654432100 01111223334444444432 24788888775321 11111 12221
Q ss_pred ----CCCCCcEEEEEccchhHHh---hhccC-CCcceeecCCCChhhHHHHHHHhhc
Q 048733 318 ----DNKKCSRIIVTTRHMNVAK---FCKLS-SSVRIHELETLPPDEAWKLFCRKAF 366 (887)
Q Consensus 318 ----~~~~gs~iivTtR~~~v~~---~~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~ 366 (887)
...+-|-|-+|||-.-... ..... +.-.++-+++++-++..+++++...
T Consensus 164 isqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 164 ISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred HHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 2345577788999753211 11111 1113566777888888888887663
No 248
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.35 E-value=0.044 Score=65.56 Aligned_cols=47 Identities=23% Similarity=0.322 Sum_probs=37.3
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|+...+.++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 36899999999887776643222346779999999999999999885
No 249
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.35 E-value=0.026 Score=54.85 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|..|.|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999874
No 250
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.096 Score=59.12 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=29.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCC
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK 234 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 234 (887)
..-|.|.|+.|+|||+||+.+++... +.....+..|+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~ 470 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCST 470 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechh
Confidence 35688999999999999999998533 44444455666553
No 251
>PTZ00494 tuzin-like protein; Provisional
Probab=96.34 E-value=0.49 Score=50.95 Aligned_cols=170 Identities=15% Similarity=0.189 Sum_probs=103.1
Q ss_pred cccCccccchhcHHHHHHHHhcC-CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHH
Q 048733 168 VEDDEVVGIESIKDKLIDLMLNG-RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTII 246 (887)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 246 (887)
.....+|.|+++-..+-+.|..- ..+.+++.+.|.-|.||++|.+.....+.. ..++|.+... ++-++.|+
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtLrsVV 439 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTLRSVV 439 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchHHHHH
Confidence 34567889998888777777764 357899999999999999999998774332 3567777654 34577888
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHH---HhCCCceEEEEe--ccCChh-HHHHHHHhcCCCC
Q 048733 247 KEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRD---HLKDKSYMVVLD--DVWKID-FWRDVEHALLDNK 320 (887)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~L~~kr~LlVlD--dv~~~~-~~~~l~~~l~~~~ 320 (887)
+.++.+.- +.-..-.+-+.+..+. ...++.-+||+- +-.+.. .+.+. ..|....
T Consensus 440 KALgV~nv-------------------e~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDr 499 (664)
T PTZ00494 440 RALGVSNV-------------------EVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDC 499 (664)
T ss_pred HHhCCCCh-------------------hhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccc
Confidence 88876432 1111112223333332 234555566653 222222 22222 2333444
Q ss_pred CCcEEEEEccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhh
Q 048733 321 KCSRIIVTTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKA 365 (887)
Q Consensus 321 ~gs~iivTtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 365 (887)
.-|+|++---.+.........+....|.+++++..+|.++-.+..
T Consensus 500 RlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 500 QACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 457787754444332222223344788999999999998877654
No 252
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.33 E-value=0.0037 Score=69.61 Aligned_cols=45 Identities=24% Similarity=0.446 Sum_probs=39.3
Q ss_pred ccccchhcHHHHHHHHhc----CCCCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 172 EVVGIESIKDKLIDLMLN----GRSKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
+++|.++.+++|++.|.. .+...+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 589999999999999832 344568999999999999999999987
No 253
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.28 E-value=0.038 Score=61.68 Aligned_cols=192 Identities=18% Similarity=0.163 Sum_probs=108.1
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
+++||-+.-...|.+.+..+. -.......|+-|+||||+|+-++.-.--.. | .....+..-..-+.|...
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g-- 85 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEG-- 85 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcC--
Confidence 467999999999999988764 123456789999999999998876411111 0 011111111222222211
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh----CCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL----KDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSR 324 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 324 (887)
.. .+. .+- +.......+++.+.+.+.. +++-=+.|+|.|... ..|..+...+-.....-.
T Consensus 86 --~~--~Dv----iEi------DaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~ 151 (515)
T COG2812 86 --SL--IDV----IEI------DAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVK 151 (515)
T ss_pred --Cc--ccc----hhh------hhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeE
Confidence 00 000 000 0001112233222222221 345558899999765 579988888876666666
Q ss_pred EEEEccch-hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCc
Q 048733 325 IIVTTRHM-NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLP 393 (887)
Q Consensus 325 iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 393 (887)
.|+.|.+. .+..-. .+..+.+.++.++.++....+...+-... .....+....|++..+|..
T Consensus 152 FIlATTe~~Kip~TI--lSRcq~f~fkri~~~~I~~~L~~i~~~E~-----I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 152 FILATTEPQKIPNTI--LSRCQRFDFKRLDLEEIAKHLAAILDKEG-----INIEEDALSLIARAAEGSL 214 (515)
T ss_pred EEEecCCcCcCchhh--hhccccccccCCCHHHHHHHHHHHHHhcC-----CccCHHHHHHHHHHcCCCh
Confidence 66666554 332211 12238999999999999888888764332 2233455666777666643
No 254
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.26 E-value=0.012 Score=66.20 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=41.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhh
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHR 251 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~ 251 (887)
..+++.++|++|+||||||.-++++. .| .++=|++|+..+...+-..|...+..
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~ 378 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQN 378 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhh
Confidence 46899999999999999999998842 22 25677888888877776666655544
No 255
>PRK06696 uridine kinase; Validated
Probab=96.24 E-value=0.0055 Score=62.05 Aligned_cols=42 Identities=26% Similarity=0.327 Sum_probs=34.6
Q ss_pred chhcHHHHHHHHhc-CCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 176 IESIKDKLIDLMLN-GRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 176 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
|++-+++|.+.+.. ..+...+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 66677888887765 3446789999999999999999999874
No 256
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.23 E-value=0.018 Score=59.22 Aligned_cols=48 Identities=29% Similarity=0.344 Sum_probs=32.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
..-+.++|.+|+|||.||.++.+... +.. -.+.+++ ..+++.++....
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g-~sv~f~~------~~el~~~Lk~~~ 152 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KAG-ISVLFIT------APDLLSKLKAAF 152 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-HcC-CeEEEEE------HHHHHHHHHHHH
Confidence 45688999999999999999999633 222 2345555 345555555544
No 257
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.20 E-value=0.047 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+++|+|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 45899999999999999998864
No 258
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.20 E-value=0.006 Score=57.85 Aligned_cols=81 Identities=20% Similarity=0.207 Sum_probs=35.5
Q ss_pred cCCCcceeEEEecccCCcCcC---cCcccceeeeCcCCC--ceeEEEcCCCccCccEEEEccCCCCCc---cccccccCC
Q 048733 785 KLKNLIGSRLILSGLTEDPIS---WFPKLRKLVLLNFEA--VKSVIIEKGAMPDIRELWIGPCPLLME---IPIGIDHLR 856 (887)
Q Consensus 785 ~l~~L~~L~L~~~~l~~~~~~---~~~~L~~L~l~~~~~--l~~~~~~~~~lp~L~~L~l~~c~~l~~---lp~~~~~l~ 856 (887)
.+++|..|.|.+|.|+..... .+|+|+.|.+.+++- +.++. ....+|.|++|.+-+|+.-.. =-..+..+|
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-hhccCCccceeeecCCchhcccCceeEEEEecC
Confidence 444455555555444432221 344455555544321 11111 123455566665555552221 011345566
Q ss_pred CCCEEEEEec
Q 048733 857 NLELLTFHDM 866 (887)
Q Consensus 857 ~L~~L~l~~c 866 (887)
+|+.|++.+-
T Consensus 141 ~l~~LDF~kV 150 (233)
T KOG1644|consen 141 SLRTLDFQKV 150 (233)
T ss_pred cceEeehhhh
Confidence 6666665554
No 259
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.18 E-value=0.00041 Score=61.12 Aligned_cols=81 Identities=22% Similarity=0.221 Sum_probs=55.1
Q ss_pred ccCCCceeEEEEecCCCCCCCccccccc-cccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccc
Q 048733 593 CIANFKLMKVLDLEDSPINYLPEGVGNL-FNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIP 671 (887)
Q Consensus 593 ~~~~~~~Lr~L~L~~~~l~~lp~~i~~L-~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 671 (887)
.+.+...|...+|++|.+..+|+.+... +-+..|+|.+| .+..+|.++..++.||.|+++.|
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n--------eisdvPeE~Aam~aLr~lNl~~N--------- 110 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN--------EISDVPEELAAMPALRSLNLRFN--------- 110 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh--------hhhhchHHHhhhHHhhhcccccC---------
Confidence 3455667777788888887777666533 36666666554 58888888888888888888887
Q ss_pred hhhhhhccCCccccccccccc
Q 048733 672 TEAAAKIHRGFGSLRGLQSLR 692 (887)
Q Consensus 672 ~~~~~~~p~~i~~L~~L~~L~ 692 (887)
.....|.-|..|.+|-.|+
T Consensus 111 --~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 111 --PLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred --ccccchHHHHHHHhHHHhc
Confidence 4445555555555555554
No 260
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.11 Score=57.71 Aligned_cols=132 Identities=15% Similarity=0.189 Sum_probs=74.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPE 273 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 273 (887)
..=|.++|++|.|||-||++|+| +.+-+| ++|-.. +++ ....+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----ELl----NkYVG---------------------- 587 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----ELL----NKYVG---------------------- 587 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----HHH----HHHhh----------------------
Confidence 34577999999999999999999 455555 333221 111 11111
Q ss_pred ccccCCHHHHHHHHHHHhCCCceEEEEeccCCh-------hH------HHHHHHhcCC--CCCCcEEEEEccchhHHh--
Q 048733 274 EIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI-------DF------WRDVEHALLD--NKKCSRIIVTTRHMNVAK-- 336 (887)
Q Consensus 274 ~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-------~~------~~~l~~~l~~--~~~gs~iivTtR~~~v~~-- 336 (887)
.++..+...+++.-...+++|+||.++.. .. ..+++.-+.. ...|--||-.|-.+.+-.
T Consensus 588 ----ESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpA 663 (802)
T KOG0733|consen 588 ----ESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPA 663 (802)
T ss_pred ----hHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchh
Confidence 12233444444444567899999999754 11 2233333332 234555555554444322
Q ss_pred hhccCCCcceeecCCCChhhHHHHHHHhhc
Q 048733 337 FCKLSSSVRIHELETLPPDEAWKLFCRKAF 366 (887)
Q Consensus 337 ~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 366 (887)
......-.....++.-+.+|-.++++..+-
T Consensus 664 iLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 664 ILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred hcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 122222235667777778888888887764
No 261
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.13 E-value=0.0011 Score=58.60 Aligned_cols=83 Identities=24% Similarity=0.248 Sum_probs=68.0
Q ss_pred CCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhh
Q 048733 570 KDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIR 649 (887)
Q Consensus 570 ~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~ 649 (887)
...++....+.++.. .++++.+-.+++.+..|+|++|.+..+|.++..++.||.|+++.| .+...|..|.
T Consensus 51 ~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N--------~l~~~p~vi~ 120 (177)
T KOG4579|consen 51 KGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN--------PLNAEPRVIA 120 (177)
T ss_pred CCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC--------ccccchHHHH
Confidence 344555556666654 456667778888999999999999999999999999999999876 4888999999
Q ss_pred cccccCeeeeccc
Q 048733 650 NLKKLRSLIVFHY 662 (887)
Q Consensus 650 ~l~~L~~L~l~~~ 662 (887)
.|.+|-.|+..++
T Consensus 121 ~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 121 PLIKLDMLDSPEN 133 (177)
T ss_pred HHHhHHHhcCCCC
Confidence 9999999988876
No 262
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.11 Score=52.47 Aligned_cols=175 Identities=17% Similarity=0.250 Sum_probs=95.9
Q ss_pred CccccchhcHHHHHHHHh----------cCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHH
Q 048733 171 DEVVGIESIKDKLIDLML----------NGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKND 240 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (887)
+++-|.|..++.|.+... ....+.+-|.++|++|.||+.||++|+.. .... |++||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--AnST-----FFSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--ANST-----FFSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cCCc-----eEEeehH-----
Confidence 456788888888877642 22345789999999999999999999984 2222 3445432
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-CCCceEEEEeccCCh---------hHHH
Q 048733 241 LLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-KDKSYMVVLDDVWKI---------DFWR 310 (887)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~---------~~~~ 310 (887)
+++....+ ..+.++..+-+.. +.|+-+|.+|.|+.. +...
T Consensus 201 ---DLvSKWmG---------------------------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasR 250 (439)
T KOG0739|consen 201 ---DLVSKWMG---------------------------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASR 250 (439)
T ss_pred ---HHHHHHhc---------------------------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHH
Confidence 12221111 1244455555444 458899999999753 2333
Q ss_pred HHHHhcC-------CCCCCcEEEEEccchhHHhhhccCCCcceeecCCCChhhHHHH-HHHhhcCCCCCCCCChHHHHHH
Q 048733 311 DVEHALL-------DNKKCSRIIVTTRHMNVAKFCKLSSSVRIHELETLPPDEAWKL-FCRKAFGPSSGGCCPSELKELS 382 (887)
Q Consensus 311 ~l~~~l~-------~~~~gs~iivTtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~l-f~~~~~~~~~~~~~~~~~~~~~ 382 (887)
.|+.-|. ....|.-|+-.|..+-+....-...-...|.+ ||.+..|..- |.-++ +.. .+.-.+.-.
T Consensus 251 RIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhl-G~t----p~~LT~~d~ 324 (439)
T KOG0739|consen 251 RIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHL-GDT----PHVLTEQDF 324 (439)
T ss_pred HHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheecc-CCC----ccccchhhH
Confidence 3433221 22334444556766655432211000023333 5666666654 44343 322 112224456
Q ss_pred HHHHHHhCCCc
Q 048733 383 QDILAKCGGLP 393 (887)
Q Consensus 383 ~~I~~~c~G~P 393 (887)
+++.+++.|..
T Consensus 325 ~eL~~kTeGyS 335 (439)
T KOG0739|consen 325 KELARKTEGYS 335 (439)
T ss_pred HHHHhhcCCCC
Confidence 77888887654
No 263
>PRK07667 uridine kinase; Provisional
Probab=96.12 E-value=0.0076 Score=59.37 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 180 KDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+.+.+.+....+...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56777788777667789999999999999999999874
No 264
>PRK04296 thymidine kinase; Provisional
Probab=96.12 E-value=0.011 Score=57.93 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=60.0
Q ss_pred EEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEE 274 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (887)
.++.|+|+.|.||||+|..++.. ...+...++.+. ..++.......++.+++.... .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~-------------------~ 59 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSRE-------------------A 59 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCccc-------------------c
Confidence 47889999999999999988874 222222333332 111212222233333321100 0
Q ss_pred cccCCHHHHHHHHHHHhCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEEEccchh
Q 048733 275 IHNMEETDLITTLRDHLKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIVTTRHMN 333 (887)
Q Consensus 275 ~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~ 333 (887)
......+++...+.+ ..++.-+||+|.+.-. ++..++...+ ...|..||+|.++..
T Consensus 60 ~~~~~~~~~~~~~~~-~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 60 IPVSSDTDIFELIEE-EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred eEeCChHHHHHHHHh-hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 001233555555555 3345569999999543 3333343333 234678999988743
No 265
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.11 E-value=0.029 Score=53.47 Aligned_cols=40 Identities=35% Similarity=0.404 Sum_probs=29.1
Q ss_pred EEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCC
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYN 237 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 237 (887)
++.|+|.+|+||||++..+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3679999999999999999874 222334567777665543
No 266
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.08 E-value=0.093 Score=54.26 Aligned_cols=137 Identities=16% Similarity=0.120 Sum_probs=69.9
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCC
Q 048733 179 IKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRD 258 (887)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~ 258 (887)
..+.+...+... .....++|+|+.|.|||||.+.++.. .. .....+++.- ......+-..++...+..... ..-
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q-~~~ 170 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRG-KKVGIVDERSEIAGCVNGVPQ-HDV 170 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECC-EEeecchhHHHHHHHhccccc-ccc
Confidence 344444444432 23567899999999999999999874 22 2223333311 011111111233322221111 000
Q ss_pred CCCCCCCCCCCCCccccccCCHHHHHHHHHHHhC-CCceEEEEeccCChhHHHHHHHhcCCCCCCcEEEEEccchhHHhh
Q 048733 259 GPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLK-DKSYMVVLDDVWKIDFWRDVEHALLDNKKCSRIIVTTRHMNVAKF 337 (887)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 337 (887)
.. ..+-.+...-...+...+. -.+=++++|.+-..+.+..+...+. .|..+|+||....+...
T Consensus 171 ~~-------------r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 171 GI-------------RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred cc-------------cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 00 0000000001112233332 4788999999987777777666653 46789999998666443
No 267
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.07 E-value=0.064 Score=61.57 Aligned_cols=48 Identities=21% Similarity=0.309 Sum_probs=39.3
Q ss_pred cCccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 170 DDEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...++|+...++++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 356899999999998887764333446789999999999999999884
No 268
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.05 E-value=0.061 Score=63.38 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=81.5
Q ss_pred CccccchhcHHHHHHHHh---cCC-------CCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHH
Q 048733 171 DEVVGIESIKDKLIDLML---NGR-------SKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKND 240 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (887)
.++.|.+...+++.+.+. ... .-.+-|.|+|++|.|||++|+.+++. ....| +.++.+ +
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~------~ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGS------D 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehH------H
Confidence 356677766666555432 211 11234889999999999999999884 33333 222211 1
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh------------hH
Q 048733 241 LLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI------------DF 308 (887)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------~~ 308 (887)
+ .....+ .....+...+...-...+.+|++|+++.. +.
T Consensus 221 ~----~~~~~g--------------------------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~ 270 (644)
T PRK10733 221 F----VEMFVG--------------------------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDE 270 (644)
T ss_pred h----HHhhhc--------------------------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchH
Confidence 1 111100 01123333344444457889999998653 12
Q ss_pred HHHHHHhc----CC--CCCCcEEEEEccchhHHhhh--ccCCCcceeecCCCChhhHHHHHHHhhc
Q 048733 309 WRDVEHAL----LD--NKKCSRIIVTTRHMNVAKFC--KLSSSVRIHELETLPPDEAWKLFCRKAF 366 (887)
Q Consensus 309 ~~~l~~~l----~~--~~~gs~iivTtR~~~v~~~~--~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 366 (887)
+......+ .. ...+.-+|.||...+..... ....-...+.++.-+.++-.+++..+..
T Consensus 271 ~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 271 REQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred HHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 22222222 21 12344455577665543321 1111126777888887777788777653
No 269
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.04 E-value=0.0013 Score=75.72 Aligned_cols=222 Identities=19% Similarity=0.100 Sum_probs=113.6
Q ss_pred ccCCCceeEEEEecCCC-CCC--CccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccc
Q 048733 593 CIANFKLMKVLDLEDSP-INY--LPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSI 669 (887)
Q Consensus 593 ~~~~~~~Lr~L~L~~~~-l~~--lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~ 669 (887)
....+++|+.|.+.++. +.. +-.....+++|+.|+++++. .... ..-...+.....+++|++|++++|..
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~----- 255 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCC-LLIT-LSPLLLLLLLSICRKLKSLDLSGCGL----- 255 (482)
T ss_pred HHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcc-cccc-cchhHhhhhhhhcCCcCccchhhhhc-----
Confidence 34456777777777764 332 33445566777777766531 0000 00001111222445666666665410
Q ss_pred cchhhhhhccCCccccccccccccccccCceecchHHHHHhh-ccccccceeEEe-ccCChhHHHHHHhcccCCcEEEEe
Q 048733 670 IPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELM-MLRQLNMLSIRR-QNGNGRDLCALIANLENVETLGVL 747 (887)
Q Consensus 670 ~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~-~l~~L~~L~l~~-~~~~~~~l~~~l~~~~~L~~L~l~ 747 (887)
++......+. .+++|+.|.+.. .......+......+++|++|+++
T Consensus 256 --------------------------------isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~ 303 (482)
T KOG1947|consen 256 --------------------------------VTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLS 303 (482)
T ss_pred --------------------------------cCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeee
Confidence 2223333333 377888887554 224666777777888889999999
Q ss_pred ecCCccccccCcccccccccceeEEeeccCCCChhhhcCCCcceeEEEecccCC------cCcCcCcccceeeeCcCCCc
Q 048733 748 MKSKEEILDLQSLSSPPQHLQYLSLRGNMKKLPDWILKLKNLIGSRLILSGLTE------DPISWFPKLRKLVLLNFEAV 821 (887)
Q Consensus 748 ~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~~l~~L~~L~L~~~~l~~------~~~~~~~~L~~L~l~~~~~l 821 (887)
+|.......+..+...+++|+.|.+..... +++++.+.+..+.... .....+++|+.+.+..+. .
T Consensus 304 ~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~ 374 (482)
T KOG1947|consen 304 GCHGLTDSGLEALLKNCPNLRELKLLSLNG--------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-I 374 (482)
T ss_pred cCccchHHHHHHHHHhCcchhhhhhhhcCC--------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-c
Confidence 876543322222222333666655443211 4555555555443211 122245556666555554 2
Q ss_pred eeEEEcCCCccCccEEEEccCCCC-CccccccccCCCCCEEEEEechhhhh
Q 048733 822 KSVIIEKGAMPDIRELWIGPCPLL-MEIPIGIDHLRNLELLTFHDMSKQVC 871 (887)
Q Consensus 822 ~~~~~~~~~lp~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~c~~~~~ 871 (887)
.... ..+.+.+|+.+ ..+......+.+|+.|++..|.....
T Consensus 375 ~~~~---------~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~ 416 (482)
T KOG1947|consen 375 SDLG---------LELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTD 416 (482)
T ss_pred cCcc---------hHHHhcCCcccchHHHHHhccCCccceEecccCccccc
Confidence 2111 13455566655 33333333444488999998875443
No 270
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.00 E-value=0.03 Score=58.18 Aligned_cols=139 Identities=17% Similarity=0.252 Sum_probs=73.3
Q ss_pred Ccccc---chhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc-cCccCCCceeE----EEEeCCCCC-----
Q 048733 171 DEVVG---IESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN-EGLKTHFSCRA----WVTVGKEYN----- 237 (887)
Q Consensus 171 ~~~vG---r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~----wv~v~~~~~----- 237 (887)
...+| |..+..--.++|..++ ...|.+.|.+|.|||.||....=. ...++.|...+ -+.++++..
T Consensus 221 ~~vwGi~prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~ 298 (436)
T COG1875 221 QEVWGIRPRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGT 298 (436)
T ss_pred hhhhccCcccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCc
Confidence 34555 5555555566676655 789999999999999887654321 12334443322 122333211
Q ss_pred ----HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHH-H---------HHhCCC---ceEEEE
Q 048733 238 ----KNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTL-R---------DHLKDK---SYMVVL 300 (887)
Q Consensus 238 ----~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~---------~~L~~k---r~LlVl 300 (887)
+.-.+..|...+..... .+... +...+.+ . .+.+|+ +-++|+
T Consensus 299 eEeKm~PWmq~i~DnLE~L~~--------------------~~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiII 357 (436)
T COG1875 299 EEEKMGPWMQAIFDNLEVLFS--------------------PNEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIII 357 (436)
T ss_pred hhhhccchHHHHHhHHHHHhc--------------------ccccc-hHHHHHHHhccceeeeeeeeecccccccceEEE
Confidence 11222223222221111 01111 1122222 1 234564 469999
Q ss_pred eccCChhHHHHHHHhcCCCCCCcEEEEEccchh
Q 048733 301 DDVWKIDFWRDVEHALLDNKKCSRIIVTTRHMN 333 (887)
Q Consensus 301 Ddv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 333 (887)
|.+.+.+. .+++..+...+.||||+.|--..+
T Consensus 358 DEaQNLTp-heikTiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 358 DEAQNLTP-HELKTILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred ehhhccCH-HHHHHHHHhccCCCEEEEcCCHHH
Confidence 99987753 234455667788999999876433
No 271
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.99 E-value=0.075 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999874
No 272
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.94 E-value=0.023 Score=59.84 Aligned_cols=100 Identities=13% Similarity=0.106 Sum_probs=59.3
Q ss_pred HHHHHHh-cCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCC
Q 048733 182 KLIDLML-NGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGP 260 (887)
Q Consensus 182 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 260 (887)
.|..+|. .+=+..+++.|+|++|+||||||.+++.. ....-..++||+..+.++.. .+++++....
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~------ 108 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDID------ 108 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHH------
Confidence 3445554 44445689999999999999999988764 22333557788777665542 2344432110
Q ss_pred CCCCCCCCCCCccccccCCHHHHHHHHHHHhC-CCceEEEEeccC
Q 048733 261 DRHAEGPLLPTPEEIHNMEETDLITTLRDHLK-DKSYMVVLDDVW 304 (887)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~ 304 (887)
..- .......++....+...++ +..-+||+|.|-
T Consensus 109 ---------~l~-v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 109 ---------NLL-VSQPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred ---------HeE-EecCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 000 0111234555555655554 456799999984
No 273
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.92 E-value=0.083 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 274
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.92 E-value=0.051 Score=54.79 Aligned_cols=126 Identities=13% Similarity=0.181 Sum_probs=67.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCC-----CCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK-----EYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPL 268 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-----~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 268 (887)
..+++|||.+|.|||||++.+..= ...-...+++.-.+ .....+-..++++.++......
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~------------ 103 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFL------------ 103 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHh------------
Confidence 458999999999999999999872 22222333333111 1123334555555554322111
Q ss_pred CCCccccccCCHHHHH-HHHHHHhCCCceEEEEeccCCh-h-----HHHHHHHhcCCCCCCcEEEEEccchhHHhhh
Q 048733 269 LPTPEEIHNMEETDLI-TTLRDHLKDKSYMVVLDDVWKI-D-----FWRDVEHALLDNKKCSRIIVTTRHMNVAKFC 338 (887)
Q Consensus 269 ~~~~~~~~~~~~~~l~-~~l~~~L~~kr~LlVlDdv~~~-~-----~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~ 338 (887)
...|.+... .+.+ -.+.+.|.-++-++|.|..-+. + +.-.+...+... .|-..+.-|.+-.++..+
T Consensus 104 ~ryPhelSG---GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~-~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 104 YRYPHELSG---GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE-LGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hcCCcccCc---hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH-hCCeEEEEEEEHHhhhhh
Confidence 112222222 2222 2456677889999999987433 1 222233333222 245566666666666654
No 275
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.92 E-value=0.076 Score=51.21 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||++.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 348999999999999999999873
No 276
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.91 E-value=0.049 Score=58.27 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCcc----CCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 181 DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLK----THFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
..|.++|..+=....++-|+|.+|+|||+|+..++-..... +.-..++||+....|++.++ .+|++.++
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence 44555555554456799999999999999998877432211 12236889999998988765 45566553
No 277
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.14 Score=50.56 Aligned_cols=52 Identities=25% Similarity=0.238 Sum_probs=36.8
Q ss_pred CccccchhcHHHHHHHHhcC-----------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCC
Q 048733 171 DEVVGIESIKDKLIDLMLNG-----------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF 224 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 224 (887)
+++-|-.+.++++.+-..-. -++.+-|.++|++|.|||-+|++|+| +....|
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 34557777777776654321 13456678999999999999999999 444444
No 278
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.90 E-value=0.03 Score=55.01 Aligned_cols=57 Identities=28% Similarity=0.270 Sum_probs=38.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCC-CCCHHHHHHHHHHHHhhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK-EYNKNDLLRTIIKEFHRL 252 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~i~~~l~~~ 252 (887)
++|+.++|+.|+||||.+.+++.....+ -..+..++... .....+.++..++.++..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 3689999999999998877777643222 33455666543 334567777777777654
No 279
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.88 E-value=0.096 Score=56.17 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|+|+|++|+||||++..++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3479999999999999999988764
No 280
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.87 E-value=0.11 Score=51.46 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCceEEEEecc-CCh--hHHHHHHHhcCC--CCCCcEEEEEccchhHHhhhc
Q 048733 281 TDLITTLRDHLKDKSYMVVLDDV-WKI--DFWRDVEHALLD--NKKCSRIIVTTRHMNVAKFCK 339 (887)
Q Consensus 281 ~~l~~~l~~~L~~kr~LlVlDdv-~~~--~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~ 339 (887)
++-.-.+.+.|-..+-+|+-|.- -+. +.-+.+...+.. ...|..||+.|.+..+|..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 33344566777788889999974 222 233344444432 234778999999999998764
No 281
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.87 E-value=0.061 Score=52.35 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=62.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEE---eCCCCCHHHHHH------HHHHHHhhccCCCCCCCCCCC
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT---VGKEYNKNDLLR------TIIKEFHRLSKHGRDGPDRHA 264 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---v~~~~~~~~~~~------~i~~~l~~~~~~~~~~~~~~~ 264 (887)
..+++|+|..|.|||||++.++... ......+++. +. ..+...... ++++.++.....
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~--------- 91 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLA--------- 91 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHh---------
Confidence 4589999999999999999998742 2233334332 22 122222111 123332221100
Q ss_pred CCCCCCCccccccCCH-HHHHHHHHHHhCCCceEEEEeccC---ChhHHHHHHHhcCCC-CC-CcEEEEEccchhHH
Q 048733 265 EGPLLPTPEEIHNMEE-TDLITTLRDHLKDKSYMVVLDDVW---KIDFWRDVEHALLDN-KK-CSRIIVTTRHMNVA 335 (887)
Q Consensus 265 ~~~~~~~~~~~~~~~~-~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~ 335 (887)
.. .....+. +.-.-.+...+-..+-++++|+-- +.+..+.+...+... .. +..||++|.+....
T Consensus 92 ----~~---~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 92 ----DR---PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred ----cC---CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 00 0111222 222333555666788899999973 223444444444322 12 56778888776544
No 282
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.85 E-value=0.026 Score=55.89 Aligned_cols=112 Identities=13% Similarity=0.229 Sum_probs=61.2
Q ss_pred EEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEE 274 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (887)
.+|.|+|+.|+||||++..+... ........++. +.+... ....-...+... . +
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E---~~~~~~~~~i~q-------------------~-~ 55 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIE---FVHESKRSLINQ-------------------R-E 55 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCcc---ccccCccceeee-------------------c-c
Confidence 37899999999999999987763 22223333333 222111 000000000000 0 0
Q ss_pred cccCCHHHHHHHHHHHhCCCceEEEEeccCChhHHHHHHHhcCCCCCCcEEEEEccchhHHh
Q 048733 275 IHNMEETDLITTLRDHLKDKSYMVVLDDVWKIDFWRDVEHALLDNKKCSRIIVTTRHMNVAK 336 (887)
Q Consensus 275 ~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 336 (887)
. ..+.....+.++..++..+=.+++|.+-+.+.+........ .|-.++.|+....+..
T Consensus 56 v-g~~~~~~~~~i~~aLr~~pd~ii~gEird~e~~~~~l~~a~---~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 56 V-GLDTLSFENALKAALRQDPDVILVGEMRDLETIRLALTAAE---TGHLVMSTLHTNSAAK 113 (198)
T ss_pred c-CCCccCHHHHHHHHhcCCcCEEEEcCCCCHHHHHHHHHHHH---cCCEEEEEecCCcHHH
Confidence 0 01123355677788877788999999987766555443332 3445777777665543
No 283
>PRK09354 recA recombinase A; Provisional
Probab=95.85 E-value=0.028 Score=59.79 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=61.2
Q ss_pred HHHHHHh-cCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCC
Q 048733 182 KLIDLML-NGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGP 260 (887)
Q Consensus 182 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 260 (887)
.|..+|. .+=+..+++-|+|++|+||||||.+++.. ....-..++||+....++.. .+++++.+...
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~----- 114 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDN----- 114 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHH-----
Confidence 4555565 44445689999999999999999998764 22334567899887777652 34444332110
Q ss_pred CCCCCCCCCCCccccccCCHHHHHHHHHHHhC-CCceEEEEeccC
Q 048733 261 DRHAEGPLLPTPEEIHNMEETDLITTLRDHLK-DKSYMVVLDDVW 304 (887)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~ 304 (887)
.- .....+.++....+...++ +..-+||+|.|-
T Consensus 115 ----------ll-i~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 115 ----------LL-VSQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred ----------eE-EecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 00 0011134555555555554 456799999984
No 284
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.80 E-value=0.0035 Score=61.92 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=32.3
Q ss_pred ccccCCCceeEEEEecCCCCC-CCccc----cccccccceeecCCCc
Q 048733 591 KSCIANFKLMKVLDLEDSPIN-YLPEG----VGNLFNLHLLNARNTK 632 (887)
Q Consensus 591 ~~~~~~~~~Lr~L~L~~~~l~-~lp~~----i~~L~~L~~L~L~~~~ 632 (887)
...+-+|+.|+..+|++|.|. ..|.. |..-+.|.+|.|++|.
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 345679999999999999886 55544 4566788888888764
No 285
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.78 E-value=0.074 Score=56.41 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCcc----CCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 181 DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLK----THFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
..|.++|..+=...+++-|+|++|+|||+|+.+++-..... +.=..++||+....|++.++. +++++++
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g 155 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFG 155 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcC
Confidence 34555566554457899999999999999998876432221 122468899998888887764 4555554
No 286
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=1.6 Score=47.49 Aligned_cols=77 Identities=16% Similarity=-0.054 Sum_probs=42.0
Q ss_pred CcEEEE-EccchhHHhh--hccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 048733 322 CSRIIV-TTRHMNVAKF--CKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVA 398 (887)
Q Consensus 322 gs~iiv-TtR~~~v~~~--~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 398 (887)
+-|||| ||-..+.... ++.....-.+.+..=+.+....|+.+...... ...+..+|.+...|.-+.=..
T Consensus 337 ~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--------~h~L~~eie~l~~~~~~tPA~ 408 (457)
T KOG0743|consen 337 DERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--------DHRLFDEIERLIEETEVTPAQ 408 (457)
T ss_pred CceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--------CcchhHHHHHHhhcCccCHHH
Confidence 457755 7776554332 22222235677888888888888888863321 123445555555555444444
Q ss_pred Hhhh-hcCC
Q 048733 399 VGGL-LSTK 406 (887)
Q Consensus 399 ~~~~-l~~~ 406 (887)
++.. |..+
T Consensus 409 V~e~lm~~~ 417 (457)
T KOG0743|consen 409 VAEELMKNK 417 (457)
T ss_pred HHHHHhhcc
Confidence 4444 4443
No 287
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.76 E-value=0.048 Score=55.73 Aligned_cols=113 Identities=17% Similarity=0.215 Sum_probs=62.5
Q ss_pred HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCC
Q 048733 181 DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGP 260 (887)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 260 (887)
..|.+.|..+=+..+++.|+|.+|+|||+||.++.... .+ +=..++|++..+. +.++.+++ .+++-....
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~----- 81 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISD----- 81 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhH-----
Confidence 34555555554456799999999999999999986531 12 2346778887643 44444443 233211100
Q ss_pred CCCCCCCCC---CCcc--ccccCCHHHHHHHHHHHhCC-CceEEEEeccC
Q 048733 261 DRHAEGPLL---PTPE--EIHNMEETDLITTLRDHLKD-KSYMVVLDDVW 304 (887)
Q Consensus 261 ~~~~~~~~~---~~~~--~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~ 304 (887)
....+... ..++ .....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 82 -~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 82 -FFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred -HHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 00000000 0000 01122446777777777764 56689999974
No 288
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.74 E-value=0.042 Score=57.96 Aligned_cols=100 Identities=16% Similarity=0.121 Sum_probs=59.7
Q ss_pred HHHHHHh-cCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCC
Q 048733 182 KLIDLML-NGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGP 260 (887)
Q Consensus 182 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 260 (887)
.|..+|. .+=+..+++-|+|++|+||||||.+++.. ....-..++||+....+++. .+++++....
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~------ 108 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLD------ 108 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHH------
Confidence 3445554 44345679999999999999999998764 22334567898877766642 3333332110
Q ss_pred CCCCCCCCCCCccccccCCHHHHHHHHHHHhC-CCceEEEEeccC
Q 048733 261 DRHAEGPLLPTPEEIHNMEETDLITTLRDHLK-DKSYMVVLDDVW 304 (887)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~ 304 (887)
. .. .....+.++....+...++ +..-+||+|.|-
T Consensus 109 -~----l~-----v~~p~~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 109 -N----LL-----ISQPDTGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred -H----he-----ecCCCCHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 0 00 0011134555666655554 356799999974
No 289
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.73 E-value=0.13 Score=48.29 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=34.6
Q ss_pred HHHHHHHHhCC-CceEEEEeccCCh-----hHHHHHHHhcCCCCCCcEEEEEccchh
Q 048733 283 LITTLRDHLKD-KSYMVVLDDVWKI-----DFWRDVEHALLDNKKCSRIIVTTRHMN 333 (887)
Q Consensus 283 l~~~l~~~L~~-kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtR~~~ 333 (887)
..+..++.+.. +-=|||||++-.. -..+++...+.....+..+|+|.|+..
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 33444455544 4459999998432 345667777777777889999999854
No 290
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.71 E-value=0.23 Score=57.63 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=39.4
Q ss_pred ccCccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 169 EDDEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
....++|....++++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 3457899999999998887654333345779999999999999999985
No 291
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.70 E-value=0.72 Score=55.42 Aligned_cols=113 Identities=17% Similarity=0.218 Sum_probs=56.7
Q ss_pred CCceEEEEeccCCh---hHHH----HHHHhcCCCCCCcEEEEEccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhh
Q 048733 293 DKSYMVVLDDVWKI---DFWR----DVEHALLDNKKCSRIIVTTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKA 365 (887)
Q Consensus 293 ~kr~LlVlDdv~~~---~~~~----~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 365 (887)
+.+-|+++|..-.. ..-. .+...+. ..|+.+|+||...+...............+. ++. +... |..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEEE
Confidence 57899999998543 1222 2233332 2478899999998876543322111111111 111 1111 11111
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHhhhhcCCCCCHHHHHHHHHHh
Q 048733 366 FGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSTKNRIVSEWKKLFDRL 420 (887)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~~w~~~~~~~ 420 (887)
. .+ . +. ...|-+|++++ |+|-.+..-|.-+.... ..++..+++.+
T Consensus 476 ~-~G---~-~g--~S~a~~iA~~~-Glp~~ii~~A~~~~~~~--~~~~~~li~~L 520 (771)
T TIGR01069 476 L-KG---I-PG--ESYAFEIAQRY-GIPHFIIEQAKTFYGEF--KEEINVLIEKL 520 (771)
T ss_pred C-CC---C-CC--CcHHHHHHHHh-CcCHHHHHHHHHHHHhh--HHHHHHHHHHH
Confidence 1 11 0 11 23566677765 78888887777665433 23455555444
No 292
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.68 E-value=0.015 Score=56.38 Aligned_cols=36 Identities=33% Similarity=0.525 Sum_probs=27.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEE
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWV 230 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 230 (887)
+..+|.|.|+.|+||||+|+.+++. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 3568999999999999999999984 44445445554
No 293
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.67 E-value=0.036 Score=52.96 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=27.5
Q ss_pred EEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCH
Q 048733 197 VAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNK 238 (887)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (887)
+.|.|.+|+|||++|.++... ....++++.-.+.++.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~ 38 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD 38 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH
Confidence 679999999999999998763 2235666766666654
No 294
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.66 E-value=0.051 Score=55.53 Aligned_cols=60 Identities=20% Similarity=0.314 Sum_probs=40.4
Q ss_pred HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHH
Q 048733 181 DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRT 244 (887)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 244 (887)
..|.++|..+=...+++.|.|.+|+|||++|.++.... . ..-..++||+... ++.++.+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 34555555554457899999999999999999876531 1 2345677887654 45555554
No 295
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.66 E-value=0.033 Score=57.12 Aligned_cols=51 Identities=27% Similarity=0.459 Sum_probs=35.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCC-ceeEEEEeCCCCC-HHHHHHHHH
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF-SCRAWVTVGKEYN-KNDLLRTII 246 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~v~~~~~-~~~~~~~i~ 246 (887)
..-++|+|.+|+|||||++.+++. ++.+| +.++++-+.+... +.++..++.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~ 121 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMK 121 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHH
Confidence 446889999999999999999985 44445 3455666666543 455555554
No 296
>PRK13695 putative NTPase; Provisional
Probab=95.64 E-value=0.03 Score=54.23 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=24.2
Q ss_pred EEEEEccCCCCHHHHHHHHhcccCccCCCceeEEE
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWV 230 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 230 (887)
-++|+|.+|+|||||++.+++.... ..+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 3789999999999999998875222 234444454
No 297
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.64 E-value=0.072 Score=51.46 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|.|||||.+.++.-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 348999999999999999999873
No 298
>PTZ00035 Rad51 protein; Provisional
Probab=95.64 E-value=0.091 Score=56.43 Aligned_cols=69 Identities=20% Similarity=0.215 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCc----cCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 181 DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGL----KTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
..|.++|..+=....++.|+|.+|+|||+|+..++-.... .+.=..++||+-...+++.+ +.++++.++
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 4455666655455789999999999999999988753221 11223567998877777766 344455543
No 299
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.61 E-value=0.031 Score=59.97 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=37.3
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|+...+.++.+.+..-.....-|.|+|..|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 35899999999988887664333345779999999999999999863
No 300
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.59 Score=45.94 Aligned_cols=151 Identities=13% Similarity=0.202 Sum_probs=81.5
Q ss_pred ccc-chhcHHHHHHHHhcC-----------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHH
Q 048733 173 VVG-IESIKDKLIDLMLNG-----------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKND 240 (887)
Q Consensus 173 ~vG-r~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (887)
+|| .+..+++|.+-+.-+ -.+.+-+.++|++|.|||-||+.|+++ ...-|+.||..-
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgse---- 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGSE---- 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechHH----
Confidence 454 566667666655422 124567789999999999999999984 234556676531
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-CCCceEEEEeccCCh-------------
Q 048733 241 LLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-KDKSYMVVLDDVWKI------------- 306 (887)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~------------- 306 (887)
+.+.+-+.. ..++..+.-.. ...+-+|+.|.+++.
T Consensus 217 ----lvqk~igeg---------------------------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggds 265 (404)
T KOG0728|consen 217 ----LVQKYIGEG---------------------------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDS 265 (404)
T ss_pred ----HHHHHhhhh---------------------------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccH
Confidence 222211100 11111111111 235677888887653
Q ss_pred h---HHHHHHHhcCC--CCCCcEEEEEccchhHHhh--hccCCCcceeecCCCChhhHHHHHHHhh
Q 048733 307 D---FWRDVEHALLD--NKKCSRIIVTTRHMNVAKF--CKLSSSVRIHELETLPPDEAWKLFCRKA 365 (887)
Q Consensus 307 ~---~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~--~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 365 (887)
+ ..-++...+.. ..+.-+||++|..-++... .....-.+.++.++-+++.-.++++-+.
T Consensus 266 evqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 266 EVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred HHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 1 12223333332 2345678886665444332 1222223567777777777667776543
No 301
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.55 E-value=0.046 Score=59.41 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCC
Q 048733 180 KDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK 234 (887)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 234 (887)
+.++...|..+=....++.|.|.+|+|||||+.+++.. ....-..++|++...
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE 120 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE 120 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc
Confidence 34555555554344679999999999999999998874 222224567776543
No 302
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.55 E-value=0.099 Score=49.89 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|..|.|||||.+.++.-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 303
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.52 E-value=0.072 Score=56.68 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCc---c-CCCceeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 181 DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGL---K-THFSCRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~-~~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
..|..+|..+=....++.|+|.+|+|||+|+..++..... . +.-..++|++....++..+ +.++++.+
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~ 154 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERY 154 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHc
Confidence 4455556555455789999999999999999988753221 1 1223578999888788775 34445444
No 304
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.51 E-value=0.11 Score=55.63 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=47.7
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCc----cCCCceeEEEEeCCCCCHHHHHHHHHHHHhh
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGL----KTHFSCRAWVTVGKEYNKNDLLRTIIKEFHR 251 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~ 251 (887)
.|.++|..+=...++.-|+|++|+|||+|+.+++-.... .+.-..++||+....|++.++.. +++.++.
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 344555555445689999999999999999988643222 12224688999999999877654 5555543
No 305
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.51 E-value=0.014 Score=64.25 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=37.3
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++||++.++.+...+..+. .|.|.|++|+|||+||+.+...
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHH
Confidence 358999999999988887654 5889999999999999999884
No 306
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.50 E-value=0.019 Score=55.03 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
++.|.|.+|+||||+|..+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 6889999999999999999864
No 307
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.24 Score=56.95 Aligned_cols=155 Identities=16% Similarity=0.168 Sum_probs=86.6
Q ss_pred CccccchhcHHHHHHHHhc---C--------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHH
Q 048733 171 DEVVGIESIKDKLIDLMLN---G--------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKN 239 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~---~--------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (887)
..+.|.+...+.+.+.+.. . -...+.+.++|++|.|||.||+.+++ ....+|-. +...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~-----v~~~---- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFIS-----VKGS---- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEE-----eeCH----
Confidence 3455666666555444322 1 13456889999999999999999999 34444422 2111
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh------------
Q 048733 240 DLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID------------ 307 (887)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~------------ 307 (887)
+++... -..+...+.+.+....+..+..|++|.++..-
T Consensus 311 ----~l~sk~--------------------------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~ 360 (494)
T COG0464 311 ----ELLSKW--------------------------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGR 360 (494)
T ss_pred ----HHhccc--------------------------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHH
Confidence 111110 01123444555555556789999999986431
Q ss_pred -HHHHHHHhcCCCCC--CcEEEEEccchhHHhhh--ccCCCcceeecCCCChhhHHHHHHHhhc
Q 048733 308 -FWRDVEHALLDNKK--CSRIIVTTRHMNVAKFC--KLSSSVRIHELETLPPDEAWKLFCRKAF 366 (887)
Q Consensus 308 -~~~~l~~~l~~~~~--gs~iivTtR~~~v~~~~--~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 366 (887)
...++...+..... +..||-||-........ ....-...+.+++-+.++..+.|..+.-
T Consensus 361 r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 361 RVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 22233333332222 32334444443332211 1111236888888999999999999874
No 308
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.49 E-value=0.088 Score=54.25 Aligned_cols=67 Identities=27% Similarity=0.332 Sum_probs=45.1
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCc----cCCCceeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGL----KTHFSCRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
.|.+.|..+=....+.-|+|++|+|||.|+.+++-.... .+.=..++|++-...|+...+. +|++..
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 455555444334569999999999999999877644222 2223468899998889887664 566543
No 309
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.49 E-value=0.053 Score=56.88 Aligned_cols=24 Identities=46% Similarity=0.620 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++.|+|++|+||||++..++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999988764
No 310
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.15 Score=49.18 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|.|||||.+.++.-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999999884
No 311
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.48 E-value=0.012 Score=53.68 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.7
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.-|.|.|++|+||||+++.+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 35889999999999999999985
No 312
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.42 E-value=0.14 Score=51.61 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=34.9
Q ss_pred cCCHHHHHH-HHHHHhCCCceEEEEeccCC------hhHHHHHHHhcCCCCCCcEEEEEccchhHH
Q 048733 277 NMEETDLIT-TLRDHLKDKSYMVVLDDVWK------IDFWRDVEHALLDNKKCSRIIVTTRHMNVA 335 (887)
Q Consensus 277 ~~~~~~l~~-~l~~~L~~kr~LlVlDdv~~------~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 335 (887)
+.+-.+.+. .|.+.|..++=|++||.--. ....-++...+... |..|++.|.+-...
T Consensus 139 ~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v 202 (254)
T COG1121 139 ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLV 202 (254)
T ss_pred ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHh
Confidence 344444444 45678889999999997532 12333444444444 77888888875443
No 313
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.39 E-value=0.021 Score=51.63 Aligned_cols=40 Identities=30% Similarity=0.315 Sum_probs=29.4
Q ss_pred hcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 178 SIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
++.+++.+.+...-....+|.+.|.-|+||||+++.+++.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555555543223458999999999999999999985
No 314
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.37 E-value=0.064 Score=49.86 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+|.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999863
No 315
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.36 E-value=0.17 Score=48.87 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|.|||||++.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 316
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.35 E-value=0.3 Score=47.43 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCceEEEEeccCC---hhHHHHHHHhcCC-CCCCcEEEEEccchhHHhhh
Q 048733 282 DLITTLRDHLKDKSYMVVLDDVWK---IDFWRDVEHALLD-NKKCSRIIVTTRHMNVAKFC 338 (887)
Q Consensus 282 ~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~ 338 (887)
+-.-.|.+.|.=++-++.+|..-+ .+...++...+.. ...|..+|+.|.....|..+
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence 334456777877888999999743 3444444443332 23466677777776655543
No 317
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.34 E-value=0.022 Score=57.93 Aligned_cols=27 Identities=37% Similarity=0.509 Sum_probs=23.7
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 191 RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 191 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.....+++|.|++|+|||||++.+..-
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999998874
No 318
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.28 E-value=0.003 Score=62.61 Aligned_cols=80 Identities=23% Similarity=0.235 Sum_probs=62.1
Q ss_pred CCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccc--hh
Q 048733 570 KDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELP--EE 647 (887)
Q Consensus 570 ~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp--~~ 647 (887)
++.+++-|.++|+... + .+++.+|+.|+||.|+-|+|+.+- .+..+++|+.|.|+.|. |..+- ..
T Consensus 17 dl~~vkKLNcwg~~L~--D--Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~--------I~sldEL~Y 83 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD--D--ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC--------IESLDELEY 83 (388)
T ss_pred HHHHhhhhcccCCCcc--H--HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc--------cccHHHHHH
Confidence 4567778888888762 2 256789999999999999998773 58899999999998764 44443 24
Q ss_pred hhcccccCeeeeccc
Q 048733 648 IRNLKKLRSLIVFHY 662 (887)
Q Consensus 648 i~~l~~L~~L~l~~~ 662 (887)
+.++++||.|.|..|
T Consensus 84 LknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDEN 98 (388)
T ss_pred HhcCchhhhHhhccC
Confidence 568899999999876
No 319
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.28 E-value=0.18 Score=55.85 Aligned_cols=25 Identities=44% Similarity=0.502 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+|.++|.+|+||||+|..++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999988874
No 320
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.28 E-value=3.2 Score=50.14 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=57.1
Q ss_pred CCceEEEEeccCChh---HHHH----HHHhcCCCCCCcEEEEEccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhh
Q 048733 293 DKSYMVVLDDVWKID---FWRD----VEHALLDNKKCSRIIVTTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKA 365 (887)
Q Consensus 293 ~kr~LlVlDdv~~~~---~~~~----l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 365 (887)
+.+-|+++|...... .-.. +...+.. .|+.+|+||...+...............+.. +. +..... .++
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~--~~~~vIitTH~~el~~~~~~~~~v~~~~~~~-d~-~~l~~~-Ykl 480 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLRK--RGAKIIATTHYKELKALMYNREGVENASVEF-DE-ETLRPT-YRL 480 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEECChHHHHHHHhcCCCeEEEEEEE-ec-CcCcEE-EEE
Confidence 577899999985431 1122 2233322 3678999999988776543322111212211 11 111111 111
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHhhhhcCCCCCHHHHHHHHHHh
Q 048733 366 FGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSTKNRIVSEWKKLFDRL 420 (887)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~~w~~~~~~~ 420 (887)
..+ . + -...|-+|++++ |+|-.+..-|.-+.... ..++..+++.+
T Consensus 481 -~~G---~-~--g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~--~~~~~~li~~l 525 (782)
T PRK00409 481 -LIG---I-P--GKSNAFEIAKRL-GLPENIIEEAKKLIGED--KEKLNELIASL 525 (782)
T ss_pred -eeC---C-C--CCcHHHHHHHHh-CcCHHHHHHHHHHHhhh--hhHHHHHHHHH
Confidence 111 0 1 134466677766 78888887777665443 23455555444
No 321
>PTZ00301 uridine kinase; Provisional
Probab=95.25 E-value=0.019 Score=57.01 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 56899999999999999998876
No 322
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.24 E-value=0.12 Score=53.35 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=43.4
Q ss_pred HHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHH
Q 048733 183 LIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLL 242 (887)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 242 (887)
+.+.|..+=+..+++-|+|+.|+||||+|.+++-. .+..-..++|++....+++..+.
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~ 106 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAK 106 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHH
Confidence 34444444455789999999999999999998774 33344478999999989886553
No 323
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.21 E-value=0.11 Score=51.69 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998874
No 324
>PRK10867 signal recognition particle protein; Provisional
Probab=95.19 E-value=0.23 Score=54.90 Aligned_cols=24 Identities=50% Similarity=0.656 Sum_probs=20.7
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
...+|.++|.+|+||||+|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998777765
No 325
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.18 E-value=0.26 Score=58.63 Aligned_cols=47 Identities=26% Similarity=0.312 Sum_probs=36.5
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+.++|....+.++.+.+..-.....-|.|+|..|+||+++|+.+++.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 45789998888888777653222234779999999999999999884
No 326
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.17 E-value=0.032 Score=53.14 Aligned_cols=98 Identities=23% Similarity=0.285 Sum_probs=52.1
Q ss_pred CCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhh-hcCCCcceeEEEecccCC----cCcCcCccccee
Q 048733 740 NVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWI-LKLKNLIGSRLILSGLTE----DPISWFPKLRKL 813 (887)
Q Consensus 740 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~-~~l~~L~~L~L~~~~l~~----~~~~~~~~L~~L 813 (887)
+...++++.|.... +..+..++ .|..|.|.+|- ..+...+ ..+++|..|.|.+|.+.. +++..||+|++|
T Consensus 43 ~~d~iDLtdNdl~~---l~~lp~l~-rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK---LDNLPHLP-RLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchhh---cccCCCcc-ccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 34445555443322 23333333 67777776653 3332223 345677777777776554 355567777777
Q ss_pred eeCcCCCceeE---EEcCCCccCccEEEEcc
Q 048733 814 VLLNFEAVKSV---IIEKGAMPDIRELWIGP 841 (887)
Q Consensus 814 ~l~~~~~l~~~---~~~~~~lp~L~~L~l~~ 841 (887)
.+.+++.-..- ...+-.+|+|+.|++..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77776532210 11233467777777654
No 327
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.17 E-value=0.014 Score=53.13 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=19.4
Q ss_pred EEEEccCCCCHHHHHHHHhcc
Q 048733 197 VAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~ 217 (887)
|.|.|.+|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999884
No 328
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.17 E-value=0.2 Score=48.82 Aligned_cols=22 Identities=45% Similarity=0.604 Sum_probs=19.9
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+|.|+|++|+||||+|+.++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 329
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.065 Score=56.85 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=58.2
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCC
Q 048733 179 IKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRD 258 (887)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~ 258 (887)
...++...|..+--...+|.|-|.+|+|||||..+++.+ ....- .+.+|+- .-++.++ +--++.++....
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsG--EES~~Qi-klRA~RL~~~~~---- 147 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSG--EESLQQI-KLRADRLGLPTN---- 147 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeC--CcCHHHH-HHHHHHhCCCcc----
Confidence 344555555554334579999999999999999999885 33222 4556554 3333332 222333432111
Q ss_pred CCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccC
Q 048733 259 GPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVW 304 (887)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~ 304 (887)
.-.-..+.+.+.+.+.+.+ .++-++|+|.+.
T Consensus 148 ------------~l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 148 ------------NLYLLAETNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred ------------ceEEehhcCHHHHHHHHHh---cCCCEEEEeccc
Confidence 0001233455555555554 688999999984
No 330
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.044 Score=53.64 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=22.7
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+.+|+|.|.+|+||||+|+.++..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999983
No 331
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.14 E-value=0.15 Score=55.01 Aligned_cols=57 Identities=28% Similarity=0.268 Sum_probs=33.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCC-CCCHHHHHHHHHHHHh
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK-EYNKNDLLRTIIKEFH 250 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~i~~~l~ 250 (887)
..++.++|+.|+||||++.++......+.....+..++... .....+.++...+.++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~g 194 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 194 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcC
Confidence 45899999999999999999887422121123445554322 2233444444444443
No 332
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.34 Score=48.81 Aligned_cols=52 Identities=27% Similarity=0.304 Sum_probs=38.8
Q ss_pred CccccchhcHHHHHHHHhcC-----------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCC
Q 048733 171 DEVVGIESIKDKLIDLMLNG-----------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF 224 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 224 (887)
.++-|-+..+++|.+.+.-. -...+=|.++|.+|.|||-||++|+|. ....|
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq--TSATF 247 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ--TSATF 247 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc--cchhh
Confidence 35678999999998876431 123455669999999999999999994 44444
No 333
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.13 E-value=0.048 Score=52.30 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=28.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcccCcc-CCCceeEEEEeCC
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNNEGLK-THFSCRAWVTVGK 234 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~ 234 (887)
+..++.+.|+.|+|||.||+.+++- .. +.....+-++.+.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSE 42 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhc
Confidence 3568899999999999999999883 33 3444455555544
No 334
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.11 E-value=0.15 Score=56.31 Aligned_cols=24 Identities=46% Similarity=0.569 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++.++|.+|+||||+|..++..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH
Confidence 579999999999999998877764
No 335
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.1 Score=50.62 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|.|||||++.++..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 336
>PRK04328 hypothetical protein; Provisional
Probab=95.09 E-value=0.067 Score=55.07 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=35.5
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCC
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK 234 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 234 (887)
.|.++|..+=...+++.|.|.+|+|||+||.++.... . ..-...+|++...
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee 61 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEE 61 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeC
Confidence 4555555543456799999999999999999876641 2 2234577887655
No 337
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.09 E-value=0.016 Score=57.27 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.5
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
||+|.|.+|+||||+|+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999874
No 338
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.08 E-value=1.5 Score=46.09 Aligned_cols=93 Identities=11% Similarity=0.106 Sum_probs=59.2
Q ss_pred CCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEEEccch-hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCC
Q 048733 293 DKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIVTTRHM-NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPS 369 (887)
Q Consensus 293 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 369 (887)
+.+=++|+||++.. .....+...+...+.++.+|++|.+. .+..... +....+++.++++++..+.+...- .
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~--SRc~~~~f~~l~~~~l~~~l~~~~--~- 163 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIV--SRCQVFNVKEPDQQKILAKLLSKN--K- 163 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHH--hCeEEEECCCCCHHHHHHHHHHcC--C-
Confidence 46778999998765 45777888887777777777655443 3332221 233899999999999888776641 1
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 048733 370 SGGCCPSELKELSQDILAKCGGLPLAIVA 398 (887)
Q Consensus 370 ~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 398 (887)
+ ++.++.++...+|.=-|+..
T Consensus 164 -----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 164 -----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred -----C---hhHHHHHHHHcCCHHHHHHH
Confidence 1 23455566666662234444
No 339
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.08 E-value=0.028 Score=56.24 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=39.4
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHH
Q 048733 179 IKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLL 242 (887)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 242 (887)
+..++++.+....++..+|+|.|+||+|||||+..+....+.+++=-.++=|+-|..++--.++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 4556777776665667899999999999999998887753333333344455556666644443
No 340
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.23 Score=56.48 Aligned_cols=52 Identities=33% Similarity=0.497 Sum_probs=37.1
Q ss_pred cccCccccchhcHHHH---HHHHhcCC-------CCcEEEEEEccCCCCHHHHHHHHhcccC
Q 048733 168 VEDDEVVGIESIKDKL---IDLMLNGR-------SKRSVVAVVGEGGLGKTTLAGKLFNNEG 219 (887)
Q Consensus 168 ~~~~~~vGr~~~~~~l---~~~L~~~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 219 (887)
+.-.++-|.++.++++ +++|.++. .-++=|.++|++|.|||.||++++....
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~ 208 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 208 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC
Confidence 3345678988766655 55555432 2245688999999999999999998533
No 341
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.05 E-value=0.25 Score=48.99 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=30.4
Q ss_pred CCCceEEEEeccCCh---hH----HHHHHHhcCCCCCCcEEEEEccchhHHhhhcc
Q 048733 292 KDKSYMVVLDDVWKI---DF----WRDVEHALLDNKKCSRIIVTTRHMNVAKFCKL 340 (887)
Q Consensus 292 ~~kr~LlVlDdv~~~---~~----~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~ 340 (887)
..++-|+++|..... .+ ...+...+... |+.+|++|...+.+.....
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~--~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLIKK--ESTVFFATHFRDIAAILGN 159 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc--CCEEEEECChHHHHHHhhc
Confidence 356789999998432 11 12233334333 7789999999988876643
No 342
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.05 E-value=0.15 Score=51.78 Aligned_cols=49 Identities=16% Similarity=0.369 Sum_probs=31.6
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHH
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTI 245 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 245 (887)
...++.|.|++|+||||||.+++... .+.. ..+++++ ..-+..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~--~e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVS--TQLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEe--CCCCHHHHHHHH
Confidence 35699999999999999986665531 1222 3345665 333556666665
No 343
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.073 Score=50.49 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|..|.|||||++.+...
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~ 48 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 344
>PRK06547 hypothetical protein; Provisional
Probab=95.01 E-value=0.033 Score=53.42 Aligned_cols=26 Identities=42% Similarity=0.503 Sum_probs=23.0
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 192 SKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
....+|.|.|++|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34779999999999999999999874
No 345
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.99 E-value=0.14 Score=48.62 Aligned_cols=127 Identities=17% Similarity=0.095 Sum_probs=65.3
Q ss_pred EEEEEEccCCCCHHHHHHHHhcccCccCCCceeE--EEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRA--WVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTP 272 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 272 (887)
..|-|++..|.||||.|..++-.. ....+.+.+ |+.-.........+... .+.-.. ...... +...+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~--~g~g~~------~~~~~ 74 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQV--MGTGFT------WETQN 74 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEE--CCCCCe------ecCCC
Confidence 477888889999999998776631 222232211 33333223333343332 111100 000000 00000
Q ss_pred cccccCCHHHHHHHHHHHhCCCc-eEEEEeccCCh-----hHHHHHHHhcCCCCCCcEEEEEccch
Q 048733 273 EEIHNMEETDLITTLRDHLKDKS-YMVVLDDVWKI-----DFWRDVEHALLDNKKCSRIIVTTRHM 332 (887)
Q Consensus 273 ~~~~~~~~~~l~~~l~~~L~~kr-~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtR~~ 332 (887)
...+.....+..+..++.+...+ =+||||.+-.. -..+++...+.....+..||+|-|+.
T Consensus 75 ~~~~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 75 READTAIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 00001112344455555665544 59999998422 24556777777777788999999986
No 346
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.99 E-value=0.16 Score=49.02 Aligned_cols=22 Identities=50% Similarity=0.585 Sum_probs=19.7
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
++.++|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999988874
No 347
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.99 E-value=0.018 Score=45.75 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=19.7
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+|.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 348
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.98 E-value=0.16 Score=54.63 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=34.0
Q ss_pred cccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 173 VVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
++|....+.++.+.+..-.....-|.|.|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777777777776653323345789999999999999999874
No 349
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.98 E-value=0.14 Score=56.03 Aligned_cols=47 Identities=32% Similarity=0.410 Sum_probs=35.5
Q ss_pred cCccccchhcHHHHHHHHh-------c---CC--C----CcEEEEEEccCCCCHHHHHHHHhc
Q 048733 170 DDEVVGIESIKDKLIDLML-------N---GR--S----KRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~-------~---~~--~----~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
+..++|.++.++.+...+. . .. . ....+.++|++|+|||++|+.++.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 4568999999988866552 1 11 0 135788999999999999999986
No 350
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.98 E-value=0.023 Score=51.99 Aligned_cols=43 Identities=26% Similarity=0.367 Sum_probs=32.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhh
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHR 251 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~ 251 (887)
+|.|.|++|+||||+|+.++++- .-.| .+...++++|++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~--gl~~-----------vsaG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL--GLKL-----------VSAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh--CCce-----------eeccHHHHHHHHHcCC
Confidence 68999999999999999999852 2111 2345678888877654
No 351
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.97 E-value=0.13 Score=50.23 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=18.5
Q ss_pred EEEEEccCCCCHHHHHHHHhc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (887)
++.|.|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999998874
No 352
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.96 E-value=0.13 Score=52.33 Aligned_cols=51 Identities=29% Similarity=0.285 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCC
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK 234 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 234 (887)
.|.+.+..+=....++.|.|.+|+||||||.++.... . ..-..++|++...
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~ 58 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEE 58 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccC
Confidence 3444554443446799999999999999999876531 1 1234577887643
No 353
>PRK08233 hypothetical protein; Provisional
Probab=94.96 E-value=0.021 Score=55.83 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|+|.|.+|+||||||+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999874
No 354
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.93 E-value=0.17 Score=49.90 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=20.1
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+++.|.|.+|.||||++..+...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~ 41 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA 41 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHH
Confidence 57888999999999999988764
No 355
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.93 E-value=0.12 Score=56.09 Aligned_cols=24 Identities=50% Similarity=0.558 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++.++|++|+||||++..++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998863
No 356
>PRK14974 cell division protein FtsY; Provisional
Probab=94.92 E-value=0.26 Score=52.60 Aligned_cols=25 Identities=44% Similarity=0.496 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...++.++|++|+||||++..++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~ 163 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY 163 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3679999999999999988877763
No 357
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.92 E-value=0.44 Score=54.47 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=36.5
Q ss_pred ccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 172 EVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|....+.++.+.+.........|.|.|.+|+|||++|+.+++.
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 5889888888887776543333445789999999999999999885
No 358
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.91 E-value=0.021 Score=57.03 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=22.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+|+|+|++|+||||||+.++..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999874
No 359
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.35 Score=47.57 Aligned_cols=47 Identities=26% Similarity=0.341 Sum_probs=35.2
Q ss_pred CccccchhcHHHHHHHHhc-----------CCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLN-----------GRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++-|.+-.++++.+...- +-++.+-|.++|++|.|||-||++|+|+
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 4566777777777666532 1134566779999999999999999996
No 360
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.88 E-value=0.013 Score=58.17 Aligned_cols=80 Identities=18% Similarity=0.133 Sum_probs=41.2
Q ss_pred cCCCcceeEEEec--ccCCc---CcCcCcccceeeeCcCCC--ceeEEEcCCCccCccEEEEccCCCCCcccc----ccc
Q 048733 785 KLKNLIGSRLILS--GLTED---PISWFPKLRKLVLLNFEA--VKSVIIEKGAMPDIRELWIGPCPLLMEIPI----GID 853 (887)
Q Consensus 785 ~l~~L~~L~L~~~--~l~~~---~~~~~~~L~~L~l~~~~~--l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~----~~~ 853 (887)
.|++|++|.++.| .+... ....+|+|++|.++++.. +..+. ....+++|..|++.+|.... +-. .+.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ 140 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTN-LDDYREKVFL 140 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccc-cccHHHHHHH
Confidence 4667777777777 32221 122447777777776531 11111 12345666667777666433 111 234
Q ss_pred cCCCCCEEEEEec
Q 048733 854 HLRNLELLTFHDM 866 (887)
Q Consensus 854 ~l~~L~~L~l~~c 866 (887)
-+++|+.|+-..+
T Consensus 141 ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 141 LLPSLKYLDGCDV 153 (260)
T ss_pred Hhhhhcccccccc
Confidence 4566666654444
No 361
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.86 E-value=0.023 Score=56.93 Aligned_cols=25 Identities=32% Similarity=0.671 Sum_probs=22.7
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+..+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999884
No 362
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.85 E-value=0.087 Score=50.33 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=32.9
Q ss_pred cccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 173 VVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+||.+..+.++.+.+..-.....-|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888877653222234669999999999999999984
No 363
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.83 E-value=0.099 Score=52.89 Aligned_cols=75 Identities=27% Similarity=0.367 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hhcccccCCchhHHHHHHHHHHHhhhchhhhH
Q 048733 5 AVNFALETLGPLLVEEIRLLGGVRKEVQSIKSELESLRSFLKDADAR-AAVEELEGGGEESVRTWVKQLRDEAYRIEDFI 83 (887)
Q Consensus 5 ~v~~~~~kl~~~l~~e~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~-~~~~~~~~~~~~~~~~wl~~lr~~ayd~eD~l 83 (887)
-|..++++|-.+.......+.-++.+++-++.|++.+|.||+..... ...- .....++.++-..||++|.++
T Consensus 297 yVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh-------~~~ed~a~~ii~kAyevEYVV 369 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKH-------DTNEDCATQIIRKAYEVEYVV 369 (402)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhh-------hhhhhHHHHHHHHHhheeeee
Confidence 45677777777777767778888999999999999999999998443 2222 458899999999999999999
Q ss_pred HHH
Q 048733 84 DEY 86 (887)
Q Consensus 84 D~~ 86 (887)
|.+
T Consensus 370 DaC 372 (402)
T PF12061_consen 370 DAC 372 (402)
T ss_pred ehh
Confidence 976
No 364
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.82 E-value=0.32 Score=52.99 Aligned_cols=25 Identities=44% Similarity=0.561 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+|.++|+.|+||||.+..++..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~ 197 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999888764
No 365
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.80 E-value=0.29 Score=47.73 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|..|.|||||++.++.-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 366
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.79 E-value=0.03 Score=56.82 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHH
Q 048733 180 KDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTII 246 (887)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 246 (887)
-.+++..+....++..+|+|.|.||+|||||.-.+......+++=-.++=|+-|..++-..++-+=+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 3566777776666788999999999999999988877544455544566667777777666655433
No 367
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.76 E-value=0.079 Score=51.07 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999985
No 368
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.76 E-value=0.061 Score=59.23 Aligned_cols=46 Identities=35% Similarity=0.446 Sum_probs=34.7
Q ss_pred CccccchhcHHHHHHHHhc-------C-------CCCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 171 DEVVGIESIKDKLIDLMLN-------G-------RSKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~-------~-------~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..++|.+..++.+...+.. . .-....+.++|++|+|||+||+.++.
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 4689999998888655421 1 01235688999999999999999987
No 369
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.74 E-value=0.39 Score=50.29 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=36.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
..++.|.|.+|+||||++.+++... ...+-..++|++... +..++...+...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQYA 83 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHHHh
Confidence 4588899999999999999887742 122234577887655 45566666655443
No 370
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.71 E-value=0.24 Score=49.52 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37888999999999999998864
No 371
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.58 E-value=0.29 Score=50.10 Aligned_cols=22 Identities=41% Similarity=0.453 Sum_probs=19.2
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+..|+|++|+|||+||..++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999988763
No 372
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.55 E-value=0.0098 Score=34.99 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=11.6
Q ss_pred eEEEEecCCCCCCCcccccc
Q 048733 600 MKVLDLEDSPINYLPEGVGN 619 (887)
Q Consensus 600 Lr~L~L~~~~l~~lp~~i~~ 619 (887)
|++|||++|.++.+|.++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55666666666666555443
No 373
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.53 E-value=0.061 Score=49.79 Aligned_cols=42 Identities=33% Similarity=0.400 Sum_probs=29.9
Q ss_pred EEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHH
Q 048733 197 VAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLR 243 (887)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 243 (887)
|.|+|++|+|||+||+.+++. ... ...-+.++...+..+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEecccccccccee
Confidence 679999999999999999984 211 233456777777766653
No 374
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.53 E-value=0.058 Score=55.85 Aligned_cols=55 Identities=27% Similarity=0.469 Sum_probs=42.8
Q ss_pred cCccccchhcHHH---HHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCC
Q 048733 170 DDEVVGIESIKDK---LIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF 224 (887)
Q Consensus 170 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 224 (887)
.+-+||..+..+. +++++.++.-..+.|.|+|++|.|||+||-.+.+..-..-.|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 4568998766653 678888776567899999999999999999999864444455
No 375
>PRK06762 hypothetical protein; Provisional
Probab=94.48 E-value=0.031 Score=53.64 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.1
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 376
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.48 E-value=0.092 Score=58.85 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCC
Q 048733 180 KDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK 234 (887)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 234 (887)
+..+.+.|..+=....++.|.|.+|+|||||+.+++.... ..-..++|++..+
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ee 118 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEE 118 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccc
Confidence 4455666655544567999999999999999999987422 2223467777543
No 377
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.47 E-value=0.29 Score=49.94 Aligned_cols=121 Identities=16% Similarity=0.164 Sum_probs=78.0
Q ss_pred ccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhh
Q 048733 172 EVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHR 251 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~ 251 (887)
.|+|-.. ..++..++.......+.+.|+|+.|+|||+-++.+++. .....-+..+..++...+...+......
T Consensus 73 ~~l~tkt-~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~ 145 (297)
T COG2842 73 DFLETKT-VRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFG 145 (297)
T ss_pred cccccch-hHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhc
Confidence 4444333 23344445444334458889999999999999999984 1122233566677777777666665544
Q ss_pred ccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--hHHHHHHHhcCCCCCC
Q 048733 252 LSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKC 322 (887)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~g 322 (887)
.. ..........+...+++..-+++.|..+.. ..++.++......+.+
T Consensus 146 ~~-----------------------~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~ 195 (297)
T COG2842 146 AT-----------------------DGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIG 195 (297)
T ss_pred cc-----------------------chhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCce
Confidence 32 224456677777778888899999998765 4677766555444433
No 378
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.44 E-value=0.028 Score=49.87 Aligned_cols=28 Identities=43% Similarity=0.501 Sum_probs=19.4
Q ss_pred EEEEccCCCCHHHHHHHHhcccCccCCCce
Q 048733 197 VAVVGEGGLGKTTLAGKLFNNEGLKTHFSC 226 (887)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 226 (887)
|.|+|.+|+||||+|+.++. .....|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 67999999999999999998 46667753
No 379
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.43 E-value=0.052 Score=56.47 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=37.8
Q ss_pred HHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCC
Q 048733 185 DLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE 235 (887)
Q Consensus 185 ~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 235 (887)
+.+..+=+..+++.|+|.+|+|||+++.++... ...+...++||+....
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEES 62 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCC
Confidence 334444345789999999999999999999884 4455788999987754
No 380
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.42 E-value=0.2 Score=51.69 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.2
Q ss_pred EEEEccCCCCHHHHHHHHhcc
Q 048733 197 VAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~ 217 (887)
|.++|.+|+||||+|+.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 679999999999999999874
No 381
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.42 E-value=0.5 Score=50.76 Aligned_cols=56 Identities=29% Similarity=0.289 Sum_probs=31.7
Q ss_pred CcEEEEEEccCCCCHH-HHHHHHhcccCccCCCceeEEEEeCC-CCCHHHHHHHHHHHH
Q 048733 193 KRSVVAVVGEGGLGKT-TLAGKLFNNEGLKTHFSCRAWVTVGK-EYNKNDLLRTIIKEF 249 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKT-tLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~i~~~l 249 (887)
+.++|.+||+.|+||| |||+..+.-... ..=..++.|+... .....+-++...+-+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im 259 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIM 259 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHh
Confidence 3689999999999998 566666553211 2223455666533 122334444444333
No 382
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.42 E-value=0.14 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+|+|.|.+|+||||||+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 383
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.41 E-value=0.12 Score=60.89 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=62.4
Q ss_pred HHHHHHHh-cCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCC
Q 048733 181 DKLIDLML-NGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDG 259 (887)
Q Consensus 181 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~ 259 (887)
..|..+|. .+=...+++-|.|++|+||||||.+++.. ....-..++|+.....++. ..+++++.+...
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~---- 114 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDS---- 114 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhH----
Confidence 44555565 34345789999999999999999876653 2222345789988777764 256666543210
Q ss_pred CCCCCCCCCCCCccccccCCHHHHHHHHHHHhCC-CceEEEEeccC
Q 048733 260 PDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKD-KSYMVVLDDVW 304 (887)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~ 304 (887)
. ........+.....+...++. +.-|||+|.+-
T Consensus 115 -----------l-lv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 115 -----------L-LVSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred -----------e-EEecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 0 011122335556666666644 56789999974
No 384
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.41 E-value=0.15 Score=54.31 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=19.0
Q ss_pred EEEEccCCCCHHHHHHHHhcc
Q 048733 197 VAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~ 217 (887)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999875
No 385
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.40 E-value=0.14 Score=57.39 Aligned_cols=55 Identities=20% Similarity=0.171 Sum_probs=37.8
Q ss_pred hcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCC
Q 048733 178 SIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK 234 (887)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 234 (887)
.-+..+.+.|..+=....++.|.|.+|+|||||+.+++.... ..-..++|++..+
T Consensus 78 TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a--~~g~kvlYvs~EE 132 (454)
T TIGR00416 78 SGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA--KNQMKVLYVSGEE 132 (454)
T ss_pred cCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECcC
Confidence 345566666665544567999999999999999999876422 1213467776543
No 386
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.38 E-value=0.26 Score=51.21 Aligned_cols=39 Identities=33% Similarity=0.337 Sum_probs=27.3
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEe
Q 048733 192 SKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV 232 (887)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 232 (887)
.+.+++.++|++|+||||++..++... ...-..+.+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~ 108 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAG 108 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeC
Confidence 346899999999999999988887642 222234555554
No 387
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.38 E-value=0.019 Score=58.33 Aligned_cols=111 Identities=29% Similarity=0.395 Sum_probs=57.0
Q ss_pred HHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCC
Q 048733 183 LIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR 262 (887)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 262 (887)
|.++|..+=+..+++.|.|.+|+|||+|+.++.... .+..=..++||+.... ..++.+.+- .++-+... .
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~------~ 77 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEE------Y 77 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHH------H
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHH------H
Confidence 344444443346799999999999999999876531 1110234677776543 333333322 22211000 0
Q ss_pred CCCCCCC---CCcccc--ccCCHHHHHHHHHHHhCC-CceEEEEecc
Q 048733 263 HAEGPLL---PTPEEI--HNMEETDLITTLRDHLKD-KSYMVVLDDV 303 (887)
Q Consensus 263 ~~~~~~~---~~~~~~--~~~~~~~l~~~l~~~L~~-kr~LlVlDdv 303 (887)
...+.+. ..+... ...+.+.+...+.+.++. +.-.+|+|.+
T Consensus 78 ~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 78 EDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp HHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred hhcCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 0000000 000000 034667777888777755 5579999986
No 388
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.34 E-value=0.1 Score=56.44 Aligned_cols=77 Identities=18% Similarity=0.309 Sum_probs=48.6
Q ss_pred CccccchhcHHHHHHHHhcC------------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCce---eEEEEeCC-
Q 048733 171 DEVVGIESIKDKLIDLMLNG------------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSC---RAWVTVGK- 234 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~---~~wv~v~~- 234 (887)
..++|.++.++.+.-.+..+ +-..+.|.++|++|+|||++|+.++.. ....|-. .-+...+-
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 46899999998887666542 112367889999999999999999884 3333311 11221111
Q ss_pred CCCHHHHHHHHHHHH
Q 048733 235 EYNKNDLLRTIIKEF 249 (887)
Q Consensus 235 ~~~~~~~~~~i~~~l 249 (887)
..+...+++.+....
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235566666665544
No 389
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.30 E-value=0.049 Score=57.31 Aligned_cols=47 Identities=26% Similarity=0.506 Sum_probs=41.1
Q ss_pred cCccccchhcHHHHHHHHhcC----CCCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 170 DDEVVGIESIKDKLIDLMLNG----RSKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
+..|+|.++.++++++.+... +..-+++.++|+.|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999998763 34578999999999999999999877
No 390
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.29 E-value=0.045 Score=50.99 Aligned_cols=36 Identities=31% Similarity=0.179 Sum_probs=25.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEE
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT 231 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 231 (887)
..||-|.|.+|+||||||+.+.+. ....-..++++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 468999999999999999999984 333333344443
No 391
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.27 E-value=0.063 Score=47.54 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=34.4
Q ss_pred CccccchhcHHHHHHHHhc----C-CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLN----G-RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~-~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|..-..+.+++.+.. . ....-|++.+|.+|+|||.+++.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4577876666666655543 2 345689999999999999988777664
No 392
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.25 E-value=0.45 Score=47.02 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=20.1
Q ss_pred EEEEEEccCCCCHHHHHHHHhc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6999999999999999998865
No 393
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.21 E-value=0.13 Score=55.21 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=45.5
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccC----CCceeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKT----HFSCRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
.+.++|..+=....++-|+|++|+|||+++.+++-...... .=..++||+....+++..+. ++++.+
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~ 160 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEAL 160 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHc
Confidence 34445544434567999999999999999999876422211 11468899998888876654 444444
No 394
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.21 E-value=0.15 Score=52.75 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=22.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+..+|.|+|.+|+|||||+..+.+.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999884
No 395
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.21 E-value=0.027 Score=49.35 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=18.7
Q ss_pred EEEEccCCCCHHHHHHHHhcc
Q 048733 197 VAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~ 217 (887)
|.|+|++|+|||+||+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998874
No 396
>PRK03839 putative kinase; Provisional
Probab=94.19 E-value=0.035 Score=54.12 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.1
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 397
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.14 E-value=0.16 Score=54.39 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=44.8
Q ss_pred HHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCcc----CCCceeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 183 LIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLK----THFSCRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
+..+|..+=....++-|+|++|+|||+++.+++-..... ..=..++||+....++...+. ++++.+
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 444454443456899999999999999999987653221 111268899998888877654 444443
No 398
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.13 E-value=0.47 Score=46.76 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|.|+.|.|||||.+.++.-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 399
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.12 E-value=0.04 Score=54.09 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|.|+|++|+||||+|+.+...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999863
No 400
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.11 E-value=0.31 Score=50.46 Aligned_cols=106 Identities=16% Similarity=0.233 Sum_probs=56.1
Q ss_pred ccchhcHHH-HHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhc
Q 048733 174 VGIESIKDK-LIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRL 252 (887)
Q Consensus 174 vGr~~~~~~-l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 252 (887)
.|...+..+ +..++... ..+|.|.|+.|+||||++..+.+. +...-..+ +.+.+..... +..+ .++
T Consensus 62 lg~~~~~~~~l~~~~~~~---~GlilisG~tGSGKTT~l~all~~--i~~~~~~i--itiEdp~E~~--~~~~-~q~--- 128 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP---HGIILVTGPTGSGKTTTLYSALSE--LNTPEKNI--ITVEDPVEYQ--IPGI-NQV--- 128 (264)
T ss_pred cCCCHHHHHHHHHHHhcC---CCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeE--EEECCCceec--CCCc-eEE---
Confidence 454444433 33444322 347999999999999999988663 22111112 2232221100 0000 000
Q ss_pred cCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChhHHHHHH
Q 048733 253 SKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKIDFWRDVE 313 (887)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~ 313 (887)
...........+.++..|+..+=.|+++++-+.+......
T Consensus 129 ---------------------~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 129 ---------------------QVNEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred ---------------------EeCCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHH
Confidence 0000011235667778888889999999998877544433
No 401
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.03 E-value=0.18 Score=55.45 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=32.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHH
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (887)
...++|+|..|+|||||++.+.... .....+++..-.+..++.++....+.
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~ 215 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLA 215 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHH
Confidence 4589999999999999999888632 22333444433334455555444443
No 402
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.02 E-value=0.12 Score=56.47 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=33.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCC-HHHHHHHHH
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYN-KNDLLRTII 246 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~ 246 (887)
...++|+|..|+|||||++.+++.. ..+.++.+-+++... +.++..+++
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l 211 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEIL 211 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhh
Confidence 4579999999999999999998731 124555566665543 445555543
No 403
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.02 E-value=0.099 Score=56.46 Aligned_cols=65 Identities=31% Similarity=0.325 Sum_probs=47.9
Q ss_pred ccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHH
Q 048733 172 EVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTI 245 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 245 (887)
.++|+++.+..+...+..+. -+.+.|++|+|||+||+.++.. .... ..+|.........+++...
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~~--l~~~---~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALARA--LGLP---FVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHHH--hCCC---eEEEecCCCCCHHHhcCch
Confidence 48888888888776666544 5789999999999999999983 3333 3566667777776665443
No 404
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.01 E-value=0.085 Score=61.25 Aligned_cols=76 Identities=22% Similarity=0.186 Sum_probs=55.8
Q ss_pred cCccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
-+.++|.++.++.|...+.... .+.|+|++|+||||+|+.+.+. -...+++..+|..- ...+...+++.+..++
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~~----~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQRR----HVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhCC----eEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 3468999999888887776643 6889999999999999999874 22334577778665 3446677777777655
Q ss_pred hh
Q 048733 250 HR 251 (887)
Q Consensus 250 ~~ 251 (887)
+.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 44
No 405
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.98 E-value=0.3 Score=49.19 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=20.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
.+++.|.|+.|.||||+.+.+..
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHHH
Confidence 56899999999999999888763
No 406
>PRK04040 adenylate kinase; Provisional
Probab=93.97 E-value=0.045 Score=53.48 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|+|++|+||||+++.+.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 407
>PRK00625 shikimate kinase; Provisional
Probab=93.94 E-value=0.04 Score=52.89 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 408
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.92 E-value=1 Score=46.83 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=37.1
Q ss_pred CCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEEEccch-hHHhhhccCCCcceeecCCC
Q 048733 293 DKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIVTTRHM-NVAKFCKLSSSVRIHELETL 352 (887)
Q Consensus 293 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~~l~~L 352 (887)
++.=++|+|+++.. +.+..+...+-....++.+|++|.+. .+..... +....+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~--SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIR--SRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHH--hcceEEEccch
Confidence 45568899999765 58888988887766677776666653 3332211 11256666655
No 409
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.90 E-value=0.48 Score=47.53 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=29.4
Q ss_pred CCceEEEEeccCCh----h--H-HHHHHHhcCCCCCCcEEEEEccchhHHhhh
Q 048733 293 DKSYMVVLDDVWKI----D--F-WRDVEHALLDNKKCSRIIVTTRHMNVAKFC 338 (887)
Q Consensus 293 ~kr~LlVlDdv~~~----~--~-~~~l~~~l~~~~~gs~iivTtR~~~v~~~~ 338 (887)
+++-|++||..... + . ...+...+... .++.+|++|...+++...
T Consensus 109 ~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 109 TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 47899999997432 1 1 12233444433 478899999998887654
No 410
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.89 E-value=0.0045 Score=61.40 Aligned_cols=58 Identities=24% Similarity=0.162 Sum_probs=27.1
Q ss_pred cCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCC
Q 048733 739 ENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTE 801 (887)
Q Consensus 739 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~ 801 (887)
.+.+.|++++|+..++.. ....+ .|+.|.|+-|. ..+. .+..|++|+.|+|..|.|..
T Consensus 19 ~~vkKLNcwg~~L~DIsi---c~kMp-~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~s 77 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI---CEKMP-LLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIES 77 (388)
T ss_pred HHhhhhcccCCCccHHHH---HHhcc-cceeEEeeccccccch-hHHHHHHHHHHHHHhccccc
Confidence 345555665554433211 11122 55666665543 2222 34455566666665555443
No 411
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.88 E-value=0.17 Score=56.51 Aligned_cols=24 Identities=46% Similarity=0.598 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|++|+||||++..++..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999888763
No 412
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.88 E-value=0.28 Score=48.58 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=19.7
Q ss_pred EEEEEEccCCCCHHHHHHHHh
Q 048733 195 SVVAVVGEGGLGKTTLAGKLF 215 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~ 215 (887)
+++.|.|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999887
No 413
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.85 E-value=0.13 Score=55.63 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=50.3
Q ss_pred cCccccchhcHHHHHHHHhcC------------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCce---eEEEEeC-
Q 048733 170 DDEVVGIESIKDKLIDLMLNG------------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSC---RAWVTVG- 233 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~---~~wv~v~- 233 (887)
+..++|.++.++.+..++... +...+.+.++|++|+|||+||+.+... ....|-. ..|...+
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGY 91 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCc
Confidence 346899999999988777541 111367899999999999999999884 3333321 1122111
Q ss_pred CCCCHHHHHHHHHHHHh
Q 048733 234 KEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 234 ~~~~~~~~~~~i~~~l~ 250 (887)
...+....++++.....
T Consensus 92 vG~d~e~~ir~L~~~A~ 108 (443)
T PRK05201 92 VGRDVESIIRDLVEIAV 108 (443)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 12355666666666553
No 414
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.82 E-value=0.16 Score=57.76 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=61.0
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCC
Q 048733 179 IKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRD 258 (887)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~ 258 (887)
-+..+.+.|..+=...+++.|.|++|+|||||+.+++... ..+-..+++++..+ +..++...+ +.++-+....
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~-- 320 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEM-- 320 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHH--
Confidence 3456777776665567899999999999999999998742 22223456665433 344444443 3333211000
Q ss_pred CCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCC-CceEEEEecc
Q 048733 259 GPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKD-KSYMVVLDDV 303 (887)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv 303 (887)
...+.+.-..........++....+.+.+.. +.-.+|+|.+
T Consensus 321 ----~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 321 ----EQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred ----hhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 0000000000000112345566666666644 4557888887
No 415
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.33 Score=57.77 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=67.6
Q ss_pred CccccchhcHHHHHHHHhcCC------CCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGR------SKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRT 244 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 244 (887)
..++|.++.+..|.+.+.... .+.....+.|+.|+|||-||+.++.- +-+..+..+-++.+. ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhh------hhh-
Confidence 457888888888888877531 14678889999999999999988773 333333344444332 111
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCce-EEEEeccCCh--hHHHHHHHhcC
Q 048733 245 IIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSY-MVVLDDVWKI--DFWRDVEHALL 317 (887)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVlDdv~~~--~~~~~l~~~l~ 317 (887)
+.+-++.+. ... ..+-...|.+.+++++| +|+||||+.. +....+...+.
T Consensus 633 vskligsp~--------------------gyv---G~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 VSKLIGSPP--------------------GYV---GKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhhccCCCc--------------------ccc---cchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 221111110 011 12233467777888887 5557999754 34444444443
No 416
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.80 E-value=0.039 Score=54.76 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=19.9
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+|+|.|++|+||||||+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999773
No 417
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.80 E-value=0.076 Score=47.85 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=25.0
Q ss_pred EEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCC
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK 234 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 234 (887)
+-|.|.|.+|+||||||..++.. .. .-|+++++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~--~~-----~~~i~isd 40 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEK--TG-----LEYIEISD 40 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHH--hC-----CceEehhh
Confidence 45789999999999999999863 11 24666664
No 418
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.79 E-value=0.39 Score=53.39 Aligned_cols=38 Identities=39% Similarity=0.382 Sum_probs=25.3
Q ss_pred EEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEe
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV 232 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 232 (887)
+++.++|++|+||||++..++........-..+..|+.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 58999999999999988877653220122234555654
No 419
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.78 E-value=0.048 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.6
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++.|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998774
No 420
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.76 E-value=0.064 Score=49.46 Aligned_cols=39 Identities=33% Similarity=0.382 Sum_probs=27.1
Q ss_pred EEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCC
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK 234 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 234 (887)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 479999999999999999999952 234455555665544
No 421
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.73 E-value=0.041 Score=53.35 Aligned_cols=22 Identities=41% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+|+|.|.+|+||||+|+.++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999884
No 422
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.73 E-value=0.057 Score=53.81 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=23.5
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 190 GRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 190 ~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.....+.+.|+|++|+|||||++.+.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3345678999999999999999999763
No 423
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.71 E-value=0.15 Score=59.44 Aligned_cols=75 Identities=21% Similarity=0.184 Sum_probs=50.5
Q ss_pred cCccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccC-CCceeEEEEeCCCCCHHHHHHHHHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKT-HFSCRAWVTVGKEYNKNDLLRTIIKE 248 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~v~~~~~~~~~~~~i~~~ 248 (887)
-++++|.++.++.+...+.... .+.++|++|+||||+|+.+.+. ... .|...+++.- ...+..++++.+..+
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n-~~~~~~~~~~~v~~~ 89 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPN-PEDPNMPRIVEVPAG 89 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEeC-CCCCchHHHHHHHHh
Confidence 3568899988888877776543 5559999999999999999974 332 3333343332 233455667776666
Q ss_pred Hhh
Q 048733 249 FHR 251 (887)
Q Consensus 249 l~~ 251 (887)
++.
T Consensus 90 ~g~ 92 (608)
T TIGR00764 90 EGR 92 (608)
T ss_pred hch
Confidence 554
No 424
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.67 E-value=0.11 Score=51.23 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=27.0
Q ss_pred EEEEEEccCCCCHHHHHHHHhcccCccCCC--------ceeEEEEeCCC
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHF--------SCRAWVTVGKE 235 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~v~~~ 235 (887)
.++.|+|++|+||||++..+.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488899999999999998887753222222 34677776655
No 425
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.66 E-value=0.67 Score=49.76 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=50.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCC-CCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE-YNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPT 271 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 271 (887)
+.+++.|+|+.|+||||++..++.....++ ..+.+|+...- ....+-++...+.++...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv------------------ 264 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVEL------------------ 264 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCE------------------
Confidence 367999999999999999998876422222 24556665332 122334444443322110
Q ss_pred ccccccCCHHHHHHHHHHHhC-CCceEEEEeccCC
Q 048733 272 PEEIHNMEETDLITTLRDHLK-DKSYMVVLDDVWK 305 (887)
Q Consensus 272 ~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~~ 305 (887)
....+..++...+...-. +..=+|++|-.-.
T Consensus 265 ---~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 265 ---IVATSPAELEEAVQYMTYVNCVDHILIDTVGR 296 (407)
T ss_pred ---EecCCHHHHHHHHHHHHhcCCCCEEEEECCCC
Confidence 011244566555554331 3456888898843
No 426
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.65 E-value=0.081 Score=59.61 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=27.4
Q ss_pred HHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 184 IDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 184 ~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
++.+....++..+|+|.|++|+||||||+.+...
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 4444445556789999999999999999999873
No 427
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.64 E-value=0.053 Score=52.47 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999884
No 428
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.61 E-value=0.057 Score=53.65 Aligned_cols=60 Identities=22% Similarity=0.291 Sum_probs=36.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEE-------EEeCCCCCHHHH--HHHHHHHHhh
Q 048733 192 SKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAW-------VTVGKEYNKNDL--LRTIIKEFHR 251 (887)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-------v~v~~~~~~~~~--~~~i~~~l~~ 251 (887)
++...|.++||+|+||||..+.++.+...+..-..++= +...-+.++++. .++.+++.+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~L 85 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQL 85 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCC
Confidence 34568889999999999999999886333332222221 112233455554 4566766544
No 429
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.58 E-value=0.41 Score=47.57 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=20.3
Q ss_pred EEEEEEccCCCCHHHHHHHHhc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
.+++|+|+.|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5899999999999999999884
No 430
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.57 E-value=0.053 Score=52.34 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=22.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|+|-||=|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999985
No 431
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.55 E-value=0.32 Score=45.70 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=17.6
Q ss_pred EEccCCCCHHHHHHHHhcc
Q 048733 199 VVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 199 I~G~gGiGKTtLa~~v~~~ 217 (887)
|+|++|+||||+|+.++..
T Consensus 1 i~G~PgsGK~t~~~~la~~ 19 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKR 19 (151)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHh
Confidence 6899999999999999984
No 432
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.50 E-value=0.067 Score=51.84 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|+|.+|+||||+|+.++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999999884
No 433
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.49 E-value=0.23 Score=53.77 Aligned_cols=112 Identities=13% Similarity=0.228 Sum_probs=62.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPE 273 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 273 (887)
...+.|.|+.|+||||+++.+.+. +..+....++. +.+..... ... ...+... .
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~~--~~~-~~~~i~q-------------------~- 175 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEYV--HRN-KRSLINQ-------------------R- 175 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhhh--ccC-ccceEEc-------------------c-
Confidence 358999999999999999988773 33333444443 22221110 000 0000000 0
Q ss_pred ccccCCHHHHHHHHHHHhCCCceEEEEeccCChhHHHHHHHhcCCCCCCcEEEEEccchhHH
Q 048733 274 EIHNMEETDLITTLRDHLKDKSYMVVLDDVWKIDFWRDVEHALLDNKKCSRIIVTTRHMNVA 335 (887)
Q Consensus 274 ~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 335 (887)
+. ........+.++..|+..+=.|++|.+-+.+.+...... ...|-.++.|.......
T Consensus 176 ev-g~~~~~~~~~l~~~lr~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 176 EV-GLDTLSFANALRAALREDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred cc-CCCCcCHHHHHHHhhccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 00 011123566678888889999999999887766653333 22344466666654443
No 434
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.46 E-value=0.73 Score=53.57 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+...++|+|+.|.|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999763
No 435
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.46 E-value=0.098 Score=51.68 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+++|+|+.|.|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 45899999999999999999875
No 436
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.45 E-value=0.08 Score=51.68 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=29.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEe
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV 232 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 232 (887)
.+++.|+|+.|+|||||++.+.. ....+|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 46889999999999999999998 35566765555543
No 437
>PRK05439 pantothenate kinase; Provisional
Probab=93.44 E-value=0.1 Score=54.81 Aligned_cols=26 Identities=23% Similarity=0.320 Sum_probs=22.8
Q ss_pred CCCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 191 RSKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 191 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
.+..-+|+|.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567999999999999999998876
No 438
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.42 E-value=0.1 Score=55.00 Aligned_cols=48 Identities=27% Similarity=0.519 Sum_probs=35.3
Q ss_pred cCccccchhcHHH---HHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 170 DDEVVGIESIKDK---LIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 170 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+||..+..+. +++++.++.=..+.|.|.|++|.|||+||..+++.
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~e 73 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKE 73 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHH
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHH
Confidence 3478998777654 57777776545678999999999999999999985
No 439
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.42 E-value=0.27 Score=51.84 Aligned_cols=91 Identities=14% Similarity=0.147 Sum_probs=52.8
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTP 272 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 272 (887)
..+++-|+|+.|+||||||..+... ....-..++||.....+++. .+++++.+.. ..-
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~---------------rll 109 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPE-----YAESLGVDLD---------------RLL 109 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HH-----HHHHTT--GG---------------GEE
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhh-----HHHhcCcccc---------------ceE
Confidence 4579999999999999999998874 33445668899998877653 3344433211 000
Q ss_pred cccccCCHHHHHHHHHHHhCC-CceEEEEeccCCh
Q 048733 273 EEIHNMEETDLITTLRDHLKD-KSYMVVLDDVWKI 306 (887)
Q Consensus 273 ~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~~~ 306 (887)
-......++....+...++. .--++|+|.|-..
T Consensus 110 -v~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 110 -VVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp -EEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred -EecCCcHHHHHHHHHHHhhcccccEEEEecCccc
Confidence 00112345555666666643 4468999998654
No 440
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.40 E-value=0.061 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.640 Sum_probs=21.0
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
++++|+|+.|+||||||+.+++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47899999999999999999883
No 441
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.39 E-value=0.069 Score=50.83 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3569999999999999999999874
No 442
>PRK06217 hypothetical protein; Validated
Probab=93.39 E-value=0.055 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=20.2
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-|.|.|.+|+||||+|+.+.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999984
No 443
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.39 E-value=0.052 Score=52.65 Aligned_cols=22 Identities=55% Similarity=0.735 Sum_probs=20.1
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 444
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.37 E-value=0.16 Score=51.96 Aligned_cols=54 Identities=11% Similarity=0.208 Sum_probs=38.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCc--cCCCceeEEEEeCCCC-CHHHHHHHHHH
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGL--KTHFSCRAWVTVGKEY-NKNDLLRTIIK 247 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~v~~~~-~~~~~~~~i~~ 247 (887)
..-++|.|..|+|||+|+..+.+.... +++-+.++++-+++.. +..+++.++.+
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~ 125 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEE 125 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhh
Confidence 346899999999999999998886331 2234677888887754 45556555544
No 445
>PHA02774 E1; Provisional
Probab=93.37 E-value=0.33 Score=54.69 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=33.0
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEe
Q 048733 179 IKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV 232 (887)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 232 (887)
-+..+..++.. .+....+.|+|++|.|||.+|..+.+- .. -....||+.
T Consensus 420 fl~~lk~~l~~-~PKknciv~~GPP~TGKS~fa~sL~~~--L~--G~vi~fvN~ 468 (613)
T PHA02774 420 FLTALKDFLKG-IPKKNCLVIYGPPDTGKSMFCMSLIKF--LK--GKVISFVNS 468 (613)
T ss_pred HHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHH--hC--CCEEEEEEC
Confidence 34455555543 334568999999999999999999883 22 223456664
No 446
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.36 E-value=0.14 Score=48.06 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=28.9
Q ss_pred hcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 178 SIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+.+++|.+.+.. +++.++|..|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhh
Confidence 446677777754 48899999999999999999885
No 447
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.36 E-value=0.6 Score=52.52 Aligned_cols=148 Identities=22% Similarity=0.335 Sum_probs=73.5
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEccCCCCHHH-HHHHHhcccCccCCCceeEEEEeCCC--CCHHHHHHHHHHHHhhccCC
Q 048733 179 IKDKLIDLMLNGRSKRSVVAVVGEGGLGKTT-LAGKLFNNEGLKTHFSCRAWVTVGKE--YNKNDLLRTIIKEFHRLSKH 255 (887)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~ 255 (887)
-.++|.+.+.+.. ||.|+|..|+|||| |+|.+|.+- |...--|-+.+. .....+.+.+.+.++.....
T Consensus 360 ~R~~ll~~ir~n~----vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 360 CRDQLLSVIRENQ----VVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred HHHHHHHHHhhCc----EEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 3455666665544 99999999999986 778777752 211112333333 33455666677666543321
Q ss_pred CCCCCCCCCCCCCCCCccccccCCH-HHHHHHHHHHhCCCceEEEEeccCChh----H-HHHHHHhcCCCCCCcEEEEEc
Q 048733 256 GRDGPDRHAEGPLLPTPEEIHNMEE-TDLITTLRDHLKDKSYMVVLDDVWKID----F-WRDVEHALLDNKKCSRIIVTT 329 (887)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~L~~kr~LlVlDdv~~~~----~-~~~l~~~l~~~~~gs~iivTt 329 (887)
......+ .+....... .+.-++. --+.+.|.+..-+|=-.||+|.+.... - +.-++..+ .....-++||||
T Consensus 431 ~VGYsIR-FEdvT~~~T-~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~l-arRrdlKliVtS 507 (1042)
T KOG0924|consen 431 TVGYSIR-FEDVTSEDT-KIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVL-ARRRDLKLIVTS 507 (1042)
T ss_pred ccceEEE-eeecCCCce-eEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHH-HhhccceEEEee
Confidence 1111000 000000000 0111222 223333444433455688899985432 2 22222233 333467999999
Q ss_pred cchhHHhhh
Q 048733 330 RHMNVAKFC 338 (887)
Q Consensus 330 R~~~v~~~~ 338 (887)
-..+...++
T Consensus 508 ATm~a~kf~ 516 (1042)
T KOG0924|consen 508 ATMDAQKFS 516 (1042)
T ss_pred ccccHHHHH
Confidence 876554443
No 448
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.31 E-value=0.055 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.6
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
++.|+|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3679999999999999999874
No 449
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.30 E-value=0.065 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=21.0
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999874
No 450
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.29 E-value=0.18 Score=51.31 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=36.0
Q ss_pred CccccchhcHHHHHHHHhc----C-CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLN----G-RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~-~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|..-.++.|+..+.. + ....-|++.+|.+|+||...++.++++
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n 133 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAEN 133 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHH
Confidence 3567776666667666654 2 345779999999999999999988875
No 451
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.26 E-value=0.07 Score=49.15 Aligned_cols=21 Identities=33% Similarity=0.713 Sum_probs=19.4
Q ss_pred EEEEccCCCCHHHHHHHHhcc
Q 048733 197 VAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~ 217 (887)
++|+|+.|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999884
No 452
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.26 E-value=0.066 Score=47.92 Aligned_cols=22 Identities=41% Similarity=0.800 Sum_probs=19.8
Q ss_pred EEEEccCCCCHHHHHHHHhccc
Q 048733 197 VAVVGEGGLGKTTLAGKLFNNE 218 (887)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~~ 218 (887)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6799999999999999998753
No 453
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.23 E-value=0.091 Score=45.40 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHh
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLF 215 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~ 215 (887)
...++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 454
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.21 E-value=1.8 Score=40.90 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+++|+|++|.||+||...|+-
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHh
Confidence 35899999999999999999876
No 455
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=93.21 E-value=0.55 Score=56.01 Aligned_cols=152 Identities=18% Similarity=0.252 Sum_probs=82.9
Q ss_pred hhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCC
Q 048733 177 ESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHG 256 (887)
Q Consensus 177 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~ 256 (887)
...+++|.+.+.... |+.|+|+.|.||||-.-+++-+.-. .....+-+.-.+......+...++++++......
T Consensus 52 ~~~~~~i~~ai~~~~----vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 52 TAVRDEILKAIEQNQ----VVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHHHHHHhCC----EEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 456778888887655 9999999999999988777764221 2222333333444456677777887776642211
Q ss_pred CCCCCCCCCCCCCCCccccccCCHHHHHHHHH-HHhCCCceEEEEeccCChh-HHHHHHHh----cCCCCCCcEEEEEcc
Q 048733 257 RDGPDRHAEGPLLPTPEEIHNMEETDLITTLR-DHLKDKSYMVVLDDVWKID-FWRDVEHA----LLDNKKCSRIIVTTR 330 (887)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~L~~kr~LlVlDdv~~~~-~~~~l~~~----l~~~~~gs~iivTtR 330 (887)
.....+ .+... ...-...-++...+...+. +.+-.+=-.||+|.+..-. .-+-+... +......-||||+|=
T Consensus 126 VGY~iR-fe~~~-s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSA 203 (845)
T COG1643 126 VGYSIR-FESKV-SPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSA 203 (845)
T ss_pred eeEEEE-eeccC-CCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 100000 00000 0001223345566666665 2333344588999996543 22222222 222333489999887
Q ss_pred chhHHh
Q 048733 331 HMNVAK 336 (887)
Q Consensus 331 ~~~v~~ 336 (887)
.-+...
T Consensus 204 Tld~~r 209 (845)
T COG1643 204 TLDAER 209 (845)
T ss_pred ccCHHH
Confidence 755443
No 456
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.18 E-value=0.15 Score=50.75 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...|+|+|.+|+|||||.+.+.+.
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 347889999999999999999885
No 457
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.15 E-value=0.072 Score=53.14 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|+|+|++|+||||||+.++..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999884
No 458
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.14 E-value=0.99 Score=50.59 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..|++++|+.|+||||++..++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 369999999999999999988874
No 459
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.14 E-value=0.06 Score=50.35 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 460
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=93.11 E-value=0.44 Score=44.08 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=26.7
Q ss_pred EEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEe
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV 232 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 232 (887)
-+.|+|-||+||+++.+.+|.- -....+...+|++.
T Consensus 22 K~vivGng~VGKssmiqryCkg-ifTkdykktIgvdf 57 (246)
T KOG4252|consen 22 KFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDF 57 (246)
T ss_pred EEEEECCCccchHHHHHHHhcc-ccccccccccchhh
Confidence 3569999999999999999973 23344556677653
No 461
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.08 E-value=0.14 Score=49.90 Aligned_cols=42 Identities=33% Similarity=0.440 Sum_probs=31.5
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..++|.+..+..+.-...+. .-+.++|++|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~----h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG----HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC----CCeEEECCCCCCHHHHHHHHHH
Confidence 46788888888776655543 4688999999999999998865
No 462
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.08 E-value=0.23 Score=53.78 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccC
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEG 219 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 219 (887)
.+=+.|+|..|.|||-|+-.+|+...
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp 87 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLP 87 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCC
Confidence 55688999999999999999999633
No 463
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=93.05 E-value=2.2 Score=41.29 Aligned_cols=113 Identities=14% Similarity=0.218 Sum_probs=67.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcccCccCCCc----eeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFS----CRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPL 268 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 268 (887)
...+|-|.|+||.|||...++..-+.-+-..|. .+.+++....|+...+...+-..+....- .+..
T Consensus 37 aG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~---------~e~~- 106 (293)
T KOG2859|consen 37 AGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSV---------GEVI- 106 (293)
T ss_pred cCcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhh---------hhhh-
Confidence 356999999999999988777766644444454 36678889999988776665555543211 0000
Q ss_pred CCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChhHHHHHHHhcCCCC
Q 048733 269 LPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKIDFWRDVEHALLDNK 320 (887)
Q Consensus 269 ~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~ 320 (887)
...-.+++++.+....++++-+|+=.+|+.+-....-++...+....
T Consensus 107 -----~~~c~te~~~eEi~~~Cm~Rf~~v~C~~s~~ll~sL~~l~y~i~~~p 153 (293)
T KOG2859|consen 107 -----AAKCPTEEQLEEIAGECMSRFRFVNCFASDDLLTSLIDLRYAIINDP 153 (293)
T ss_pred -----hhcCCcHhHHHHHHHHHHhhEEEEEeeccHHHHHHHHHHHHHHhcCC
Confidence 00111234556666777766666666776544444445544444433
No 464
>PRK13947 shikimate kinase; Provisional
Probab=93.05 E-value=0.067 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999883
No 465
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.02 E-value=0.35 Score=51.16 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=38.9
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCC-CHHHHHHHH
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEY-NKNDLLRTI 245 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i 245 (887)
++++.+..-. ....++|.|..|+|||+|++++.+.. +-+.++++-+.+.. .+.+++.++
T Consensus 146 rvID~l~Pi~-kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 146 RVLDTLFPVV-KGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred hhhhcccccc-CCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 3444444321 23478999999999999999999852 23467778777654 344555544
No 466
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.01 E-value=0.39 Score=53.28 Aligned_cols=45 Identities=20% Similarity=0.387 Sum_probs=31.4
Q ss_pred cEEEEEEccCCCCHHHHH-HHHhcccCc-----cCCCceeEEEEeCCCCCH
Q 048733 194 RSVVAVVGEGGLGKTTLA-GKLFNNEGL-----KTHFSCRAWVTVGKEYNK 238 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~v~~~~~~ 238 (887)
..-++|.|..|+|||+|| ..+.|...+ .++-..++++-+++..+.
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rE 239 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSN 239 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHH
Confidence 346889999999999997 566665322 123456778888876543
No 467
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.00 E-value=0.1 Score=54.27 Aligned_cols=34 Identities=35% Similarity=0.597 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 181 DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++.+.... +-+.++|+.|+|||++++.....
T Consensus 23 ~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhcc
Confidence 34555555432 45679999999999999998864
No 468
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.95 E-value=0.089 Score=48.51 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+++.|+|.+|+||||+.+.+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 579999999999999999888763
No 469
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.92 E-value=0.075 Score=49.51 Aligned_cols=20 Identities=40% Similarity=0.640 Sum_probs=18.5
Q ss_pred EEEEEccCCCCHHHHHHHHh
Q 048733 196 VVAVVGEGGLGKTTLAGKLF 215 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~ 215 (887)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999886
No 470
>PRK05922 type III secretion system ATPase; Validated
Probab=92.92 E-value=0.3 Score=53.75 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...++|+|..|+|||||.+.+.+.
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~ 180 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKG 180 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhcc
Confidence 346899999999999999999874
No 471
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.91 E-value=0.24 Score=54.56 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=33.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCC-HHHHHHHHH
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYN-KNDLLRTII 246 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~ 246 (887)
...++|+|..|+|||||++.+++... .+..+.+-+++... +.++..+.+
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l 207 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDL 207 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHh
Confidence 45889999999999999999987422 23445566655443 445544443
No 472
>PRK13949 shikimate kinase; Provisional
Probab=92.91 E-value=0.074 Score=51.01 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-|.|+|++|+||||+++.+++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999884
No 473
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.90 E-value=0.66 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.4
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.|.|+|++|+||||+|+.++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998863
No 474
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.89 E-value=0.78 Score=50.71 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=35.0
Q ss_pred hcHHHHHHHHh-----cCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEE
Q 048733 178 SIKDKLIDLML-----NGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWV 230 (887)
Q Consensus 178 ~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 230 (887)
.-+.++.+||. ...-+.+++.|.|++|.||||.++.++.. ..+..+=|.
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLske----lg~~~~Ew~ 142 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKE----LGYQLIEWS 142 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHh----hCceeeeec
Confidence 44566777777 33335679999999999999999988773 223444565
No 475
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.88 E-value=0.14 Score=53.40 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 192 SKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999987654
No 476
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.87 E-value=0.083 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.7
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++.|+|+.|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37889999999999999999774
No 477
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=92.86 E-value=0.35 Score=48.13 Aligned_cols=47 Identities=19% Similarity=0.439 Sum_probs=33.1
Q ss_pred EEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCC-CHHHHHHHH
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEY-NKNDLLRTI 245 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i 245 (887)
.-++|.|.+|+|||+|+..+.+... -+..+++.+++.. .+.++..++
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~ 63 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEEL 63 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHH
Confidence 4688999999999999999988632 2334777776553 344555554
No 478
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.84 E-value=0.077 Score=50.68 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=18.3
Q ss_pred EEEEccCCCCHHHHHHHHhcc
Q 048733 197 VAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~ 217 (887)
|.|.|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 679999999999999998875
No 479
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.80 E-value=0.097 Score=51.83 Aligned_cols=25 Identities=40% Similarity=0.488 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+|.|+|++|+||||||+.+...
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 480
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.77 E-value=1.3 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|.|||||++.++.-
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 481
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.76 E-value=0.48 Score=52.09 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+++++|+.|+||||++..+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999987765
No 482
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.75 E-value=0.011 Score=56.26 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=54.1
Q ss_pred cceeEEEecccCCcC---cCcCcccceeeeCcCCCceeEEEc--CCCccCccEEEEccCCCCCcc-ccccccCCCCCEEE
Q 048733 789 LIGSRLILSGLTEDP---ISWFPKLRKLVLLNFEAVKSVIIE--KGAMPDIRELWIGPCPLLMEI-PIGIDHLRNLELLT 862 (887)
Q Consensus 789 L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~~~~--~~~lp~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~ 862 (887)
++.++-+++.|.... +..+++++.|.+.+|..+.+|..+ -+-.|+|+.|+|++|+.+++- -..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 445555555554433 335667777778888777766322 235789999999999987752 23667888999998
Q ss_pred EEech
Q 048733 863 FHDMS 867 (887)
Q Consensus 863 l~~c~ 867 (887)
|.+.|
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 88876
No 483
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.71 E-value=0.28 Score=50.31 Aligned_cols=49 Identities=18% Similarity=0.343 Sum_probs=31.1
Q ss_pred cEEEEEEccCCCCHHHHH-HHHhcccCccCCCcee-EEEEeCCCC-CHHHHHHHHH
Q 048733 194 RSVVAVVGEGGLGKTTLA-GKLFNNEGLKTHFSCR-AWVTVGKEY-NKNDLLRTII 246 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~v~~~~-~~~~~~~~i~ 246 (887)
..-++|.|.+|+|||+|| ..+.+. . +-+.+ +++-+.+.. .+.++..++.
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~ 120 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLE 120 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHH
Confidence 346889999999999996 566653 1 22333 566666554 3455555544
No 484
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.70 E-value=0.18 Score=53.59 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 181 DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+.+.+....++..+|+|.|.+|+|||||+..+...
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555443456789999999999999999987664
No 485
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.70 E-value=0.12 Score=54.73 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 181 DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+.+.+....+...+|+|+|.+|+|||||+..+...
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444444456789999999999999999998774
No 486
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=92.70 E-value=1.2 Score=53.69 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
...++|+|..|.|||||++.+..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998875
No 487
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.65 E-value=7.5 Score=42.28 Aligned_cols=59 Identities=25% Similarity=0.237 Sum_probs=38.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEe--CCCCCHHHHHHHHHHHHhhccC
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV--GKEYNKNDLLRTIIKEFHRLSK 254 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~~~~i~~~l~~~~~ 254 (887)
.+.||-.+|.-|.||||.|..+++. .+. ....+-+.. ...+...+-++.+.++++....
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~--lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKY--LKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHH--HHH-cCCceEEEecccCChHHHHHHHHHHHHcCCcee
Confidence 3579999999999999998888774 222 222222222 2334456667778877766543
No 488
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.65 E-value=0.24 Score=54.46 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...++|+|..|+|||||++.+...
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~ 163 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARN 163 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC
Confidence 457899999999999999988874
No 489
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.64 E-value=0.15 Score=53.99 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=32.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHH
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLR 243 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 243 (887)
.+++.+.|.||+||||+|...+-. .......++-|+.....++.+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~--lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK--LAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH--HHHcCCcEEEEEeCCCCchHhhhc
Confidence 468999999999999999886553 222223466676666666655543
No 490
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.63 E-value=0.17 Score=49.57 Aligned_cols=42 Identities=31% Similarity=0.416 Sum_probs=26.7
Q ss_pred EEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCH
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNK 238 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (887)
.|+|.|-||+||||+|........-++.|. +.-|+...++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh
Confidence 589999999999999988544311222233 344555555554
No 491
>PRK14530 adenylate kinase; Provisional
Probab=92.58 E-value=0.086 Score=53.01 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.|.|+|++|+||||+|+.++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 492
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.57 E-value=0.085 Score=49.44 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+|.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998874
No 493
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=0.36 Score=49.30 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=25.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcccCccCCC
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF 224 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 224 (887)
.+..+.|||++|.|||-+|+.|+. ...-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa--~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAA--TMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHH--hcCCce
Confidence 457899999999999999999998 344444
No 494
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.55 E-value=0.11 Score=51.13 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|.|.+|+||||+|+.++..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999884
No 495
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.55 E-value=0.66 Score=44.81 Aligned_cols=129 Identities=19% Similarity=0.065 Sum_probs=65.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCC---CCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCC
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK---EYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLP 270 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~---~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 270 (887)
...|.|+|..|-||||.|..+.-. ..++=..+..+..-+ .......+..+ ..+.-... ... . .+..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l-~~v~~~~~--g~~--~----~~~~ 90 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFG-GGVEFHVM--GTG--F----TWET 90 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcC-CCcEEEEC--CCC--C----cccC
Confidence 457889999999999999877663 222222223232222 22333333221 00000000 000 0 0000
Q ss_pred CccccccCCHHHHHHHHHHHhCC-CceEEEEeccCCh-----hHHHHHHHhcCCCCCCcEEEEEccchh
Q 048733 271 TPEEIHNMEETDLITTLRDHLKD-KSYMVVLDDVWKI-----DFWRDVEHALLDNKKCSRIIVTTRHMN 333 (887)
Q Consensus 271 ~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtR~~~ 333 (887)
.+...+.....+..+..++.+.. +-=+||||.+-.. -..+++...+.....+..||+|-|+..
T Consensus 91 ~~~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 91 QDRERDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 00000111123344455556644 4459999998432 246677777777777889999999863
No 496
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.55 E-value=0.21 Score=47.41 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+.|.|++|+|||||++.++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468899999999999999999985
No 497
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.53 E-value=0.29 Score=54.35 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=36.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCC-CHHHHHHHHH
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEY-NKNDLLRTII 246 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i~ 246 (887)
..-++|.|.+|+|||||+.++.+... +.+-+.++++-+++.. .+.+++.++.
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~ 195 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMK 195 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHH
Confidence 45689999999999999988887532 2255677777776543 3555555554
No 498
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.53 E-value=0.26 Score=52.50 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCceEEEEeccCChhHHHHHHHhcCCCCCCcEEEEEccchhHH
Q 048733 283 LITTLRDHLKDKSYMVVLDDVWKIDFWRDVEHALLDNKKCSRIIVTTRHMNVA 335 (887)
Q Consensus 283 l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 335 (887)
..+.+...|+..+=.+|+|.+-..+.|+- ...+..+..| ++.|+.....+
T Consensus 207 ~~~~l~~~Lr~~pd~ii~gE~r~~e~~~~-l~a~~~g~~~--~i~T~Ha~~~~ 256 (308)
T TIGR02788 207 PKDLLQSCLRMRPDRIILGELRGDEAFDF-IRAVNTGHPG--SITTLHAGSPE 256 (308)
T ss_pred HHHHHHHHhcCCCCeEEEeccCCHHHHHH-HHHHhcCCCe--EEEEEeCCCHH
Confidence 34556667888888899999988777654 3333333322 46666655443
No 499
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.52 E-value=0.11 Score=50.58 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+|.|+|++|+|||||++.+.+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999874
No 500
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=92.52 E-value=5.9 Score=41.40 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=45.0
Q ss_pred CCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEEEccch-hHHhhhccCCCcceeecCCCChhhHHHHHHH
Q 048733 293 DKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIVTTRHM-NVAKFCKLSSSVRIHELETLPPDEAWKLFCR 363 (887)
Q Consensus 293 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~ 363 (887)
+++-++|+||++.+ ..+..+...+-....++.+|++|.+. .+..... +....+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~--SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIK--SRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHH--HcceeeeCCC-cHHHHHHHHHH
Confidence 45669999999865 57888888887766667777766554 3433222 2226777766 66666666653
Done!