Query 048733
Match_columns 887
No_of_seqs 493 out of 3972
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 21:57:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.9E-48 2E-52 445.4 26.9 323 174-537 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 4.7E-39 1.6E-43 372.2 19.8 297 172-528 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 3.4E-38 1.2E-42 404.7 29.0 320 167-535 120-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 2.9E-35 9.8E-40 345.4 28.3 314 170-532 123-449 (591)
5 4fmz_A Internalin; leucine ric 99.9 4.4E-21 1.5E-25 209.2 16.4 285 550-867 44-344 (347)
6 3rgz_A Protein brassinosteroid 99.8 2.1E-21 7.3E-26 234.1 10.8 300 549-867 177-525 (768)
7 2id5_A Lingo-1, leucine rich r 99.8 1.9E-20 6.6E-25 213.5 16.8 290 548-867 30-331 (477)
8 4eco_A Uncharacterized protein 99.8 6.8E-21 2.3E-25 224.3 13.2 298 549-867 248-598 (636)
9 4fmz_A Internalin; leucine ric 99.8 2.4E-20 8.4E-25 203.3 15.4 266 569-867 41-322 (347)
10 3rgz_A Protein brassinosteroid 99.8 4.1E-21 1.4E-25 231.7 10.0 309 550-867 294-715 (768)
11 4ecn_A Leucine-rich repeat pro 99.8 8.7E-21 3E-25 227.0 12.2 266 570-867 489-787 (876)
12 3o6n_A APL1; leucine-rich repe 99.8 2.7E-20 9.2E-25 206.3 13.8 279 550-867 45-350 (390)
13 4eco_A Uncharacterized protein 99.8 1.1E-20 3.7E-25 222.6 10.8 285 548-865 204-545 (636)
14 4fcg_A Uncharacterized protein 99.8 1.2E-20 4.2E-25 203.0 9.8 230 570-867 79-312 (328)
15 3v47_A TOLL-like receptor 5B a 99.8 5.2E-20 1.8E-24 208.7 15.4 301 548-867 28-406 (455)
16 4ecn_A Leucine-rich repeat pro 99.8 2.3E-20 7.9E-25 223.3 12.9 299 549-868 490-839 (876)
17 3oja_B Anopheles plasmodium-re 99.8 3.1E-20 1.1E-24 217.5 13.6 276 550-866 51-334 (597)
18 3vq2_A TLR4, TOLL-like recepto 99.8 2.5E-19 8.4E-24 211.1 19.5 304 548-867 30-410 (606)
19 1o6v_A Internalin A; bacterial 99.8 2.6E-19 8.9E-24 203.2 18.3 282 550-867 68-386 (466)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 4.6E-20 1.6E-24 214.8 12.4 100 766-867 404-508 (562)
21 3t6q_A CD180 antigen; protein- 99.8 3.5E-20 1.2E-24 218.4 8.5 275 573-867 255-558 (606)
22 1o6v_A Internalin A; bacterial 99.8 5.2E-19 1.8E-23 200.8 17.9 284 550-867 46-364 (466)
23 2z81_A CD282 antigen, TOLL-lik 99.8 3.7E-19 1.3E-23 207.0 16.1 301 549-867 25-421 (549)
24 3o6n_A APL1; leucine-rich repe 99.8 1.4E-19 4.8E-24 200.5 11.9 270 549-844 68-351 (390)
25 2z7x_B TOLL-like receptor 1, v 99.8 8.6E-20 2.9E-24 210.7 9.6 128 736-867 321-479 (520)
26 3t6q_A CD180 antigen; protein- 99.8 2.6E-19 8.8E-24 210.9 12.6 218 633-867 258-511 (606)
27 2z7x_B TOLL-like receptor 1, v 99.8 9.4E-19 3.2E-23 202.0 16.0 300 550-867 21-410 (520)
28 1ogq_A PGIP-2, polygalacturona 99.8 3.2E-20 1.1E-24 198.6 3.3 243 599-867 51-302 (313)
29 3bz5_A Internalin-J, INLJ; leu 99.8 6.7E-19 2.3E-23 198.1 13.9 277 549-867 41-350 (457)
30 3qfl_A MLA10; coiled-coil, (CC 99.8 1.6E-19 5.4E-24 158.4 6.8 109 4-119 1-114 (115)
31 3vq2_A TLR4, TOLL-like recepto 99.8 3.7E-19 1.3E-23 209.5 12.1 113 548-662 78-214 (606)
32 2z63_A TOLL-like receptor 4, v 99.8 1.7E-18 6E-23 202.3 17.6 298 548-867 26-407 (570)
33 3oja_B Anopheles plasmodium-re 99.8 3.4E-19 1.2E-23 208.6 11.3 275 549-867 74-356 (597)
34 2id5_A Lingo-1, leucine rich r 99.8 9.2E-19 3.1E-23 199.6 14.4 268 571-867 31-307 (477)
35 2z81_A CD282 antigen, TOLL-lik 99.8 4.9E-19 1.7E-23 205.9 11.6 154 711-867 331-508 (549)
36 2z63_A TOLL-like receptor 4, v 99.8 8.1E-19 2.8E-23 205.2 13.1 101 766-867 422-529 (570)
37 3v47_A TOLL-like receptor 5B a 99.8 1.5E-18 5E-23 196.8 14.8 282 548-849 52-412 (455)
38 3bz5_A Internalin-J, INLJ; leu 99.8 4.7E-18 1.6E-22 191.2 17.7 258 570-867 40-329 (457)
39 3j0a_A TOLL-like receptor 5; m 99.8 1.8E-18 6.2E-23 210.8 14.1 294 548-867 22-373 (844)
40 3j0a_A TOLL-like receptor 5; m 99.8 4.9E-18 1.7E-22 207.0 17.7 297 548-867 46-392 (844)
41 1xku_A Decorin; proteoglycan, 99.7 5.4E-18 1.8E-22 183.1 13.7 239 598-868 52-305 (330)
42 2ft3_A Biglycan; proteoglycan, 99.7 2.4E-18 8.3E-23 186.0 9.7 281 551-867 34-331 (332)
43 1ziw_A TOLL-like receptor 3; i 99.7 5.3E-18 1.8E-22 202.5 13.4 294 548-867 23-364 (680)
44 1ogq_A PGIP-2, polygalacturona 99.7 3.9E-19 1.3E-23 190.1 2.7 250 572-849 50-308 (313)
45 4fcg_A Uncharacterized protein 99.7 4.2E-18 1.4E-22 183.2 10.4 103 550-662 81-193 (328)
46 2z80_A TOLL-like receptor 2, v 99.7 3E-18 1E-22 187.0 6.7 244 572-867 52-312 (353)
47 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.3E-17 4.5E-22 194.0 12.3 111 549-662 30-156 (562)
48 1xku_A Decorin; proteoglycan, 99.7 2.9E-17 9.9E-22 177.4 14.1 281 551-866 32-329 (330)
49 3g06_A SSPH2 (leucine-rich rep 99.7 6.3E-17 2.2E-21 187.4 17.3 253 552-867 42-295 (622)
50 2ft3_A Biglycan; proteoglycan, 99.7 1.1E-17 3.7E-22 180.9 7.6 259 573-869 34-307 (332)
51 1jl5_A Outer protein YOPM; leu 99.7 1E-16 3.6E-21 180.1 15.1 276 549-868 90-408 (454)
52 1ziw_A TOLL-like receptor 3; i 99.7 9.8E-17 3.3E-21 191.6 14.0 101 766-866 330-440 (680)
53 2z66_A Variable lymphocyte rec 99.7 5.2E-17 1.8E-21 173.4 8.0 219 598-867 28-259 (306)
54 3zyi_A Leucine-rich repeat-con 99.6 1.5E-16 5.1E-21 179.7 9.8 218 598-867 75-301 (452)
55 3zyj_A Leucine-rich repeat-con 99.6 1.8E-16 6.2E-21 178.3 9.7 218 598-867 64-290 (440)
56 1z7x_W Ribonuclease inhibitor; 99.6 9.3E-18 3.2E-22 190.5 -1.0 307 550-867 3-409 (461)
57 2qen_A Walker-type ATPase; unk 99.6 1.5E-14 5.1E-19 157.5 24.3 308 169-529 10-349 (350)
58 1w5s_A Origin recognition comp 99.6 2.3E-14 8E-19 159.8 24.6 302 170-508 21-372 (412)
59 4g8a_A TOLL-like receptor 4; l 99.6 4.7E-16 1.6E-20 184.3 11.1 113 548-662 50-183 (635)
60 2z66_A Variable lymphocyte rec 99.6 2.3E-16 7.7E-21 168.4 6.7 223 571-844 27-260 (306)
61 3zyj_A Leucine-rich repeat-con 99.6 4.3E-16 1.5E-20 175.2 8.6 128 571-723 63-194 (440)
62 1wwl_A Monocyte differentiatio 99.6 2.5E-17 8.6E-22 176.1 -1.8 243 592-867 37-307 (312)
63 2z80_A TOLL-like receptor 2, v 99.6 1.2E-15 4.1E-20 166.3 11.3 244 549-819 51-312 (353)
64 3o53_A Protein LRIM1, AGAP0063 99.6 1.6E-17 5.3E-22 178.2 -4.0 240 593-867 29-273 (317)
65 3zyi_A Leucine-rich repeat-con 99.6 6E-16 2E-20 174.7 8.6 201 571-801 74-280 (452)
66 3o53_A Protein LRIM1, AGAP0063 99.6 1.4E-17 4.9E-22 178.5 -4.6 245 569-849 31-279 (317)
67 3ogk_B Coronatine-insensitive 99.6 4.9E-16 1.7E-20 182.4 7.0 304 549-867 163-524 (592)
68 2fna_A Conserved hypothetical 99.6 6.1E-14 2.1E-18 153.2 23.2 312 169-528 11-356 (357)
69 3oja_A Leucine-rich immune mol 99.6 8.6E-16 2.9E-20 174.4 8.5 234 595-863 31-269 (487)
70 1jl5_A Outer protein YOPM; leu 99.6 6.3E-15 2.2E-19 165.5 14.5 267 550-867 131-427 (454)
71 4g8a_A TOLL-like receptor 4; l 99.6 1.4E-14 4.7E-19 171.6 17.9 117 572-703 52-186 (635)
72 3ogk_B Coronatine-insensitive 99.6 4.2E-16 1.4E-20 183.0 4.5 285 570-867 162-499 (592)
73 3oja_A Leucine-rich immune mol 99.6 1.2E-16 4.2E-21 181.3 -0.5 234 570-840 32-270 (487)
74 1z7x_W Ribonuclease inhibitor; 99.6 1.1E-16 3.9E-21 181.6 -2.1 186 678-867 219-438 (461)
75 1ozn_A Reticulon 4 receptor; N 99.6 2.2E-15 7.7E-20 158.8 7.8 213 601-867 14-236 (285)
76 3g06_A SSPH2 (leucine-rich rep 99.6 8.5E-15 2.9E-19 169.6 12.5 245 549-853 60-305 (622)
77 2ast_B S-phase kinase-associat 99.6 4.3E-16 1.5E-20 168.7 1.2 249 574-853 49-314 (336)
78 2ca6_A RAN GTPase-activating p 99.5 3.2E-16 1.1E-20 173.2 -1.3 240 591-846 25-317 (386)
79 1wwl_A Monocyte differentiatio 99.5 1.4E-14 4.8E-19 154.7 11.0 199 596-843 93-307 (312)
80 1ozn_A Reticulon 4 receptor; N 99.5 4.2E-15 1.4E-19 156.7 5.9 198 571-819 31-236 (285)
81 2p1m_B Transport inhibitor res 99.5 2.6E-15 8.7E-20 176.4 3.4 62 807-868 455-518 (594)
82 2ca6_A RAN GTPase-activating p 99.5 1.8E-15 6.2E-20 167.1 0.8 37 831-867 273-314 (386)
83 2ast_B S-phase kinase-associat 99.5 5.7E-15 1.9E-19 159.9 4.1 223 572-819 70-304 (336)
84 2p1m_B Transport inhibitor res 99.5 1.1E-14 3.7E-19 171.0 4.1 154 712-866 370-541 (594)
85 1h6u_A Internalin H; cell adhe 99.5 5.7E-14 2E-18 149.4 9.1 195 570-804 39-234 (308)
86 1h6u_A Internalin H; cell adhe 99.5 1.8E-13 6.2E-18 145.6 11.7 190 594-819 37-228 (308)
87 2z62_A TOLL-like receptor 4, v 99.5 5.8E-14 2E-18 147.2 7.3 212 602-867 11-235 (276)
88 2z62_A TOLL-like receptor 4, v 99.4 4E-14 1.4E-18 148.4 5.7 80 573-662 29-110 (276)
89 2qby_B CDC6 homolog 3, cell di 99.4 1.3E-11 4.6E-16 135.9 26.2 298 170-509 19-341 (384)
90 2v1u_A Cell division control p 99.4 1.9E-11 6.6E-16 134.8 24.8 299 170-508 18-352 (387)
91 1fnn_A CDC6P, cell division co 99.4 4.9E-11 1.7E-15 131.6 28.0 322 171-534 17-386 (389)
92 3rfs_A Internalin B, repeat mo 99.4 9.7E-14 3.3E-18 145.0 5.1 85 766-857 158-247 (272)
93 2xwt_C Thyrotropin receptor; s 99.4 1.5E-13 5E-18 140.7 5.8 81 735-818 151-236 (239)
94 4glp_A Monocyte differentiatio 99.4 7.9E-13 2.7E-17 141.0 11.5 205 570-801 62-286 (310)
95 1h6t_A Internalin B; cell adhe 99.4 5.2E-13 1.8E-17 140.7 9.3 180 596-811 44-224 (291)
96 2o6q_A Variable lymphocyte rec 99.4 5.6E-13 1.9E-17 139.0 8.6 57 598-662 37-95 (270)
97 3rfs_A Internalin B, repeat mo 99.4 7.1E-14 2.4E-18 146.0 1.1 208 594-833 37-247 (272)
98 1p9a_G Platelet glycoprotein I 99.4 3.8E-13 1.3E-17 141.6 6.6 200 569-800 7-208 (290)
99 1m9s_A Internalin B; cell inva 99.4 7E-13 2.4E-17 153.4 8.8 183 595-813 40-223 (605)
100 3goz_A Leucine-rich repeat-con 99.4 1.2E-13 4.1E-18 150.8 2.1 235 592-844 16-296 (362)
101 1p9a_G Platelet glycoprotein I 99.3 6.6E-13 2.3E-17 139.7 7.4 194 617-867 6-206 (290)
102 2o6q_A Variable lymphocyte rec 99.3 1.1E-12 3.8E-17 136.7 8.8 73 599-692 17-91 (270)
103 2xwt_C Thyrotropin receptor; s 99.3 5.3E-13 1.8E-17 136.4 6.0 209 603-868 16-238 (239)
104 2qby_A CDC6 homolog 1, cell di 99.3 3.9E-11 1.3E-15 132.3 21.4 297 170-508 19-349 (386)
105 4ay9_X Follicle-stimulating ho 99.3 9.9E-13 3.4E-17 142.7 7.8 218 599-841 31-255 (350)
106 4glp_A Monocyte differentiatio 99.3 6.6E-13 2.3E-17 141.6 5.3 152 709-867 140-305 (310)
107 4ay9_X Follicle-stimulating ho 99.3 1.1E-12 3.7E-17 142.5 7.0 237 601-865 12-255 (350)
108 3goz_A Leucine-rich repeat-con 99.3 2.8E-13 9.4E-18 148.0 0.8 243 602-867 2-295 (362)
109 3cvr_A Invasion plasmid antige 99.2 2.8E-12 9.5E-17 146.6 5.6 187 599-856 60-254 (571)
110 1njg_A DNA polymerase III subu 99.2 2.1E-10 7.1E-15 117.6 16.4 201 171-403 23-231 (250)
111 4ezg_A Putative uncharacterize 99.2 1.9E-11 6.4E-16 120.7 7.7 147 711-867 41-192 (197)
112 4ezg_A Putative uncharacterize 99.2 4.7E-11 1.6E-15 117.7 9.9 153 595-800 41-194 (197)
113 3m19_A Variable lymphocyte rec 99.2 2.9E-11 9.9E-16 124.4 7.4 64 736-801 128-193 (251)
114 1dce_A Protein (RAB geranylger 99.1 5.9E-12 2E-16 144.7 1.8 204 618-862 346-566 (567)
115 1h6t_A Internalin B; cell adhe 99.1 6.6E-11 2.2E-15 124.5 9.7 168 570-776 44-211 (291)
116 3cvr_A Invasion plasmid antige 99.1 1.8E-11 6.2E-16 139.9 4.9 89 712-811 158-254 (571)
117 1xeu_A Internalin C; cellular 99.1 8.9E-12 3.1E-16 129.0 1.6 159 593-810 36-195 (263)
118 2chg_A Replication factor C sm 99.1 1.4E-09 4.9E-14 109.4 17.4 183 171-399 17-203 (226)
119 1m9s_A Internalin B; cell inva 99.1 3.8E-11 1.3E-15 138.8 5.9 187 597-819 20-208 (605)
120 1dce_A Protein (RAB geranylger 99.1 6.7E-13 2.3E-17 152.7 -10.0 205 595-838 346-566 (567)
121 3m19_A Variable lymphocyte rec 99.1 1.7E-10 5.8E-15 118.6 9.0 155 572-752 35-192 (251)
122 4b8c_D Glucose-repressible alc 99.0 7.2E-11 2.4E-15 140.2 3.9 218 550-800 173-404 (727)
123 1xeu_A Internalin C; cellular 99.0 4.4E-10 1.5E-14 116.2 7.3 147 568-750 37-183 (263)
124 3e6j_A Variable lymphocyte rec 98.9 1E-09 3.4E-14 111.0 7.6 130 571-725 39-170 (229)
125 2je0_A Acidic leucine-rich nuc 98.9 7.8E-10 2.7E-14 103.5 5.7 126 571-721 16-147 (149)
126 2o6s_A Variable lymphocyte rec 98.9 3.3E-10 1.1E-14 112.8 3.2 52 601-662 10-62 (208)
127 1sxj_B Activator 1 37 kDa subu 98.9 8.7E-09 3E-13 110.3 14.0 185 171-401 21-211 (323)
128 2o6s_A Variable lymphocyte rec 98.9 4.6E-10 1.6E-14 111.7 3.5 58 597-662 27-86 (208)
129 2v9t_B SLIT homolog 2 protein 98.9 1.3E-09 4.4E-14 109.3 6.5 128 572-724 32-162 (220)
130 1hqc_A RUVB; extended AAA-ATPa 98.9 1.2E-08 4.1E-13 109.3 14.5 264 171-506 12-324 (324)
131 2ell_A Acidic leucine-rich nuc 98.9 2E-09 6.7E-14 103.0 7.3 82 571-662 23-105 (168)
132 4b8c_D Glucose-repressible alc 98.9 1.1E-10 3.7E-15 138.7 -2.7 153 611-818 214-369 (727)
133 2v70_A SLIT-2, SLIT homolog 2 98.8 2.7E-09 9.3E-14 107.0 6.9 128 572-724 32-163 (220)
134 2je0_A Acidic leucine-rich nuc 98.8 1.2E-09 4E-14 102.3 3.0 128 595-746 14-147 (149)
135 2ell_A Acidic leucine-rich nuc 98.8 1.2E-09 4.2E-14 104.5 3.1 132 595-750 21-158 (168)
136 3e6j_A Variable lymphocyte rec 98.8 2.8E-09 9.7E-14 107.6 5.9 57 598-662 40-98 (229)
137 2v9t_B SLIT homolog 2 protein 98.8 9E-09 3.1E-13 103.2 8.1 125 739-867 32-163 (220)
138 2v70_A SLIT-2, SLIT homolog 2 98.8 8.7E-09 3E-13 103.3 7.9 126 740-867 33-164 (220)
139 1a9n_A U2A', U2A'; complex (nu 98.8 6E-09 2.1E-13 100.4 6.2 81 570-662 17-98 (176)
140 2xot_A Amphoterin-induced prot 98.8 3.1E-09 1.1E-13 115.6 4.5 173 601-800 21-202 (361)
141 2xot_A Amphoterin-induced prot 98.8 9.1E-09 3.1E-13 111.8 8.0 83 570-662 62-146 (361)
142 1ds9_A Outer arm dynein; leuci 98.7 9.4E-10 3.2E-14 108.4 -0.4 109 591-724 41-150 (198)
143 1iqp_A RFCS; clamp loader, ext 98.7 7.3E-08 2.5E-12 103.2 13.7 184 171-400 25-212 (327)
144 3sb4_A Hypothetical leucine ri 98.7 7.9E-09 2.7E-13 110.8 5.0 119 738-862 201-327 (329)
145 1a9n_A U2A', U2A'; complex (nu 98.7 2.9E-08 9.9E-13 95.6 7.5 122 548-692 17-146 (176)
146 3te6_A Regulatory protein SIR3 98.6 2.8E-07 9.5E-12 96.1 14.0 174 172-366 21-212 (318)
147 1w8a_A SLIT protein; signaling 98.6 2.4E-08 8.2E-13 97.7 5.2 37 594-630 50-87 (192)
148 1w8a_A SLIT protein; signaling 98.6 1.1E-08 3.9E-13 100.0 2.7 102 599-723 30-135 (192)
149 2wfh_A SLIT homolog 2 protein 98.6 1E-07 3.5E-12 93.1 8.1 101 765-867 31-137 (193)
150 1ds9_A Outer arm dynein; leuci 98.6 1.7E-08 5.9E-13 99.3 2.4 124 600-749 25-150 (198)
151 2wfh_A SLIT homolog 2 protein 98.5 3.2E-08 1.1E-12 96.8 4.1 103 598-723 31-135 (193)
152 1jr3_A DNA polymerase III subu 98.5 7.7E-07 2.6E-11 97.2 15.6 202 171-400 16-221 (373)
153 2o6r_A Variable lymphocyte rec 98.4 5.3E-07 1.8E-11 86.7 9.0 101 571-692 27-130 (177)
154 2chq_A Replication factor C sm 98.4 1.3E-06 4.4E-11 93.0 13.0 179 171-398 17-202 (319)
155 1jbk_A CLPB protein; beta barr 98.4 1.9E-07 6.6E-12 91.2 5.6 45 171-217 22-66 (195)
156 2r9u_A Variable lymphocyte rec 98.3 5.2E-07 1.8E-11 86.4 6.6 57 598-662 33-91 (174)
157 2z4s_A Chromosomal replication 98.3 3.8E-06 1.3E-10 93.0 14.2 203 172-421 106-333 (440)
158 3h4m_A Proteasome-activating n 98.3 2.1E-06 7.3E-11 89.6 11.5 176 170-392 16-222 (285)
159 2o6r_A Variable lymphocyte rec 98.3 9.9E-07 3.4E-11 84.8 8.2 101 765-867 28-135 (177)
160 3pfi_A Holliday junction ATP-d 98.3 2.6E-05 9.1E-10 83.5 20.3 174 170-398 28-225 (338)
161 3g39_A Variable lymphocyte rec 98.3 4.7E-07 1.6E-11 86.4 4.7 76 598-692 30-108 (170)
162 3sb4_A Hypothetical leucine ri 98.3 3E-06 1E-10 90.5 11.6 217 597-838 100-327 (329)
163 3bos_A Putative DNA replicatio 98.3 1.7E-06 5.7E-11 87.9 9.0 171 171-399 28-216 (242)
164 2r9u_A Variable lymphocyte rec 98.3 5.8E-07 2E-11 86.0 4.9 100 601-725 15-116 (174)
165 2ra8_A Uncharacterized protein 98.3 4.5E-07 1.5E-11 97.4 4.5 63 643-722 163-227 (362)
166 4fdw_A Leucine rich hypothetic 98.2 6.2E-06 2.1E-10 90.3 13.4 238 592-867 130-381 (401)
167 1sxj_D Activator 1 41 kDa subu 98.2 7.6E-06 2.6E-10 88.4 13.8 193 171-398 37-233 (353)
168 2qz4_A Paraplegin; AAA+, SPG7, 98.2 2E-05 6.7E-10 81.1 16.2 179 171-394 6-215 (262)
169 3pvs_A Replication-associated 98.2 8.7E-06 3E-10 89.9 13.7 179 171-397 26-212 (447)
170 1d2n_A N-ethylmaleimide-sensit 98.2 2.7E-05 9.3E-10 80.5 16.6 171 172-392 34-229 (272)
171 3g39_A Variable lymphocyte rec 98.2 2.5E-06 8.7E-11 81.2 7.6 99 553-662 12-112 (170)
172 3syl_A Protein CBBX; photosynt 98.2 1.1E-05 3.9E-10 85.2 13.4 158 172-366 32-218 (309)
173 1xwi_A SKD1 protein; VPS4B, AA 98.1 8.5E-05 2.9E-09 78.6 19.3 185 170-400 11-223 (322)
174 4fdw_A Leucine rich hypothetic 98.1 1.5E-05 5.1E-10 87.2 13.9 234 573-842 136-380 (401)
175 3u61_B DNA polymerase accessor 98.1 2.4E-05 8.2E-10 83.3 15.2 176 171-396 26-212 (324)
176 3uk6_A RUVB-like 2; hexameric 98.1 2.9E-05 1E-09 84.3 16.2 209 170-397 43-300 (368)
177 3eie_A Vacuolar protein sortin 98.1 2E-05 7E-10 83.6 14.0 182 170-399 17-227 (322)
178 1sxj_A Activator 1 95 kDa subu 98.1 7.8E-06 2.7E-10 92.7 11.3 195 170-400 38-253 (516)
179 3un9_A NLR family member X1; l 98.1 8.2E-07 2.8E-11 96.3 2.6 141 598-751 101-251 (372)
180 1sxj_E Activator 1 40 kDa subu 98.1 5.6E-06 1.9E-10 89.5 9.2 100 293-399 133-236 (354)
181 3d8b_A Fidgetin-like protein 1 98.1 2.5E-05 8.5E-10 84.1 13.6 184 170-400 83-295 (357)
182 2ra8_A Uncharacterized protein 98.1 1.3E-06 4.6E-11 93.7 3.4 129 731-867 164-318 (362)
183 1a5t_A Delta prime, HOLB; zinc 98.1 8.9E-05 3.1E-09 79.0 17.5 190 177-400 8-205 (334)
184 3cf0_A Transitional endoplasmi 98.0 8.4E-05 2.9E-09 77.9 16.7 179 170-395 14-223 (301)
185 1sxj_C Activator 1 40 kDa subu 98.0 6.3E-05 2.1E-09 80.5 15.6 180 171-396 25-208 (340)
186 3vfd_A Spastin; ATPase, microt 98.0 8.7E-05 3E-09 81.0 16.8 183 170-399 114-325 (389)
187 2zan_A Vacuolar protein sortin 98.0 0.00011 3.6E-09 81.6 17.1 184 170-399 133-344 (444)
188 3un9_A NLR family member X1; l 98.0 2.8E-07 9.7E-12 99.9 -4.3 62 782-844 178-251 (372)
189 2qp9_X Vacuolar protein sortin 98.0 5.3E-05 1.8E-09 81.3 13.3 183 171-400 51-261 (355)
190 3n70_A Transport activator; si 98.0 1.8E-05 6.1E-10 72.9 8.2 46 172-217 2-47 (145)
191 1l8q_A Chromosomal replication 97.9 0.00011 3.7E-09 78.1 15.4 165 181-394 24-202 (324)
192 3b9p_A CG5977-PA, isoform A; A 97.9 0.00011 3.8E-09 77.0 14.7 179 170-399 20-232 (297)
193 2p65_A Hypothetical protein PF 97.9 5.1E-06 1.7E-10 80.4 3.7 45 171-217 22-66 (187)
194 3e4g_A ATP synthase subunit S, 97.8 5.1E-06 1.8E-10 78.0 2.4 80 788-867 62-150 (176)
195 3ec2_A DNA replication protein 97.8 3E-05 1E-09 74.5 7.9 118 176-331 19-142 (180)
196 2ifg_A High affinity nerve gro 97.8 1.7E-05 5.7E-10 85.4 5.5 96 769-867 12-114 (347)
197 1lv7_A FTSH; alpha/beta domain 97.7 0.00038 1.3E-08 71.1 14.7 48 170-217 11-68 (257)
198 3hu3_A Transitional endoplasmi 97.7 9.3E-05 3.2E-09 82.5 10.7 175 171-392 204-406 (489)
199 2ifg_A High affinity nerve gro 97.7 2.5E-05 8.6E-10 84.0 6.0 61 594-662 27-90 (347)
200 4b4t_L 26S protease subunit RP 97.7 0.00018 6.2E-09 78.1 12.3 176 171-393 181-387 (437)
201 4b4t_J 26S protease regulatory 97.7 0.00015 5.3E-09 77.3 11.5 177 170-393 147-354 (405)
202 2gno_A DNA polymerase III, gam 97.7 0.00023 7.8E-09 74.2 12.5 147 175-365 1-152 (305)
203 3co5_A Putative two-component 97.7 3.1E-05 1.1E-09 71.1 5.1 46 172-217 5-50 (143)
204 1qvr_A CLPB protein; coiled co 97.7 0.00013 4.4E-09 88.2 11.5 45 171-217 170-214 (854)
205 1in4_A RUVB, holliday junction 97.6 0.0037 1.3E-07 66.3 21.1 172 171-397 25-220 (334)
206 2w58_A DNAI, primosome compone 97.6 5E-05 1.7E-09 74.5 5.9 53 178-232 36-90 (202)
207 4b4t_H 26S protease regulatory 97.6 0.00031 1E-08 76.1 12.2 176 171-393 209-415 (467)
208 3pxg_A Negative regulator of g 97.6 0.00016 5.5E-09 80.7 9.7 45 171-217 180-224 (468)
209 4fs7_A Uncharacterized protein 97.6 0.00034 1.2E-08 76.6 12.1 269 568-867 67-377 (394)
210 4b4t_K 26S protease regulatory 97.5 0.00056 1.9E-08 74.2 13.1 48 170-217 171-229 (428)
211 4b4t_I 26S protease regulatory 97.5 0.00059 2E-08 73.1 12.3 176 171-393 182-388 (437)
212 2bjv_A PSP operon transcriptio 97.5 0.00056 1.9E-08 70.1 12.1 47 171-217 6-52 (265)
213 2ce7_A Cell division protein F 97.5 0.00091 3.1E-08 73.9 13.9 176 171-393 16-221 (476)
214 4b4t_M 26S protease regulatory 97.5 0.00069 2.3E-08 73.5 12.6 48 170-217 180-238 (434)
215 4fcw_A Chaperone protein CLPB; 97.4 0.00084 2.9E-08 70.7 12.3 46 172-217 18-70 (311)
216 1io0_A Tropomodulin; LRR prote 97.3 0.0001 3.5E-09 71.0 3.9 70 590-662 28-103 (185)
217 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0016 5.3E-08 77.9 14.9 45 171-217 186-230 (758)
218 1ojl_A Transcriptional regulat 97.3 0.00088 3E-08 70.0 11.1 47 171-217 2-48 (304)
219 2c9o_A RUVB-like 1; hexameric 97.3 0.0023 8E-08 71.1 14.8 92 296-399 297-409 (456)
220 2r62_A Cell division protease 97.3 0.00017 5.8E-09 74.2 4.8 47 171-217 11-67 (268)
221 3e4g_A ATP synthase subunit S, 97.2 0.00043 1.5E-08 64.9 6.8 34 599-632 62-96 (176)
222 3pxi_A Negative regulator of g 97.2 0.0025 8.4E-08 76.0 15.0 47 171-217 491-544 (758)
223 3cf2_A TER ATPase, transitiona 97.2 0.0024 8.4E-08 74.7 13.4 178 169-393 202-407 (806)
224 1ofh_A ATP-dependent HSL prote 97.1 0.0014 4.8E-08 68.9 10.3 47 171-217 15-73 (310)
225 3pxi_A Negative regulator of g 97.1 0.001 3.6E-08 79.2 10.3 45 171-217 180-224 (758)
226 4fs7_A Uncharacterized protein 97.1 0.0035 1.2E-07 68.4 13.7 93 765-861 297-393 (394)
227 1ixz_A ATP-dependent metallopr 97.1 0.0055 1.9E-07 62.2 13.5 46 171-217 16-72 (254)
228 2kjq_A DNAA-related protein; s 97.0 0.0011 3.7E-08 61.0 7.2 24 194-217 36-59 (149)
229 1iy2_A ATP-dependent metallopr 96.9 0.0054 1.8E-07 63.2 12.2 47 170-217 39-96 (278)
230 2cvh_A DNA repair and recombin 96.9 0.0027 9.3E-08 62.8 9.5 45 193-242 19-63 (220)
231 2dhr_A FTSH; AAA+ protein, hex 96.9 0.0066 2.3E-07 67.4 13.3 48 170-217 30-87 (499)
232 2r44_A Uncharacterized protein 96.7 0.0058 2E-07 64.8 10.7 42 172-217 28-69 (331)
233 1ypw_A Transitional endoplasmi 96.7 0.0048 1.6E-07 73.5 10.7 49 169-217 202-261 (806)
234 2qgz_A Helicase loader, putati 96.7 0.00062 2.1E-08 71.3 2.7 42 176-217 133-175 (308)
235 3m6a_A ATP-dependent protease 96.7 0.0053 1.8E-07 69.7 10.4 47 171-217 81-131 (543)
236 1io0_A Tropomodulin; LRR prote 96.6 0.00071 2.4E-08 65.0 2.4 122 569-703 33-164 (185)
237 3t15_A Ribulose bisphosphate c 96.6 0.015 5E-07 60.3 12.6 24 194-217 36-59 (293)
238 4gt6_A Cell surface protein; l 96.6 0.0095 3.2E-07 64.9 11.7 102 766-871 266-372 (394)
239 2x8a_A Nuclear valosin-contain 96.6 0.035 1.2E-06 56.8 14.9 46 171-217 10-67 (274)
240 3rw6_A Nuclear RNA export fact 96.6 0.0013 4.4E-08 66.7 4.0 59 595-662 167-230 (267)
241 1r6b_X CLPA protein; AAA+, N-t 96.5 0.031 1.1E-06 66.6 16.2 47 171-217 458-511 (758)
242 1um8_A ATP-dependent CLP prote 96.4 0.0057 1.9E-07 66.2 8.5 47 171-217 21-95 (376)
243 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0029 1E-07 65.1 5.4 69 194-305 123-193 (331)
244 1qvr_A CLPB protein; coiled co 96.3 0.024 8.1E-07 68.4 13.8 47 171-217 558-611 (854)
245 3rw6_A Nuclear RNA export fact 96.3 0.0034 1.1E-07 63.6 5.1 81 571-660 169-259 (267)
246 3hr8_A Protein RECA; alpha and 96.2 0.012 4.1E-07 62.2 9.1 100 182-304 48-149 (356)
247 1g5t_A COB(I)alamin adenosyltr 96.0 0.008 2.7E-07 57.1 6.1 125 195-332 29-163 (196)
248 3io5_A Recombination and repai 95.9 0.035 1.2E-06 56.8 10.3 102 182-305 13-122 (333)
249 1n0w_A DNA repair protein RAD5 95.8 0.016 5.5E-07 58.1 7.9 66 183-249 13-82 (243)
250 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.017 5.9E-07 57.5 8.0 134 194-332 23-168 (235)
251 1v5w_A DMC1, meiotic recombina 95.8 0.04 1.4E-06 58.4 10.9 67 182-249 110-180 (343)
252 1jr3_D DNA polymerase III, del 95.7 0.073 2.5E-06 56.5 12.9 164 183-398 9-183 (343)
253 2b8t_A Thymidine kinase; deoxy 95.7 0.0066 2.2E-07 59.6 4.2 112 193-331 11-125 (223)
254 3c8u_A Fructokinase; YP_612366 95.6 0.0077 2.6E-07 58.9 4.2 39 179-217 7-45 (208)
255 4gt6_A Cell surface protein; l 95.5 0.017 5.9E-07 62.8 6.9 126 734-867 260-389 (394)
256 2z43_A DNA repair and recombin 95.4 0.034 1.2E-06 58.5 8.8 67 182-249 95-165 (324)
257 1rz3_A Hypothetical protein rb 95.4 0.015 5E-07 56.5 5.4 41 176-216 3-44 (201)
258 2zr9_A Protein RECA, recombina 95.3 0.038 1.3E-06 58.5 8.7 100 182-304 48-149 (349)
259 2i1q_A DNA repair and recombin 95.2 0.048 1.7E-06 57.3 9.1 67 182-249 86-166 (322)
260 3cf2_A TER ATPase, transitiona 95.1 0.038 1.3E-06 64.7 8.5 50 168-217 474-534 (806)
261 1xp8_A RECA protein, recombina 95.0 0.055 1.9E-06 57.5 8.8 100 182-304 61-162 (366)
262 3nbx_X ATPase RAVA; AAA+ ATPas 95.0 0.02 6.8E-07 63.7 5.4 42 172-217 23-64 (500)
263 3jvv_A Twitching mobility prot 94.9 0.049 1.7E-06 57.7 7.8 53 282-337 184-236 (356)
264 1u94_A RECA protein, recombina 94.8 0.056 1.9E-06 57.3 8.2 100 182-304 50-151 (356)
265 3hws_A ATP-dependent CLP prote 94.7 0.019 6.5E-07 61.7 4.3 46 172-217 16-74 (363)
266 1odf_A YGR205W, hypothetical 3 94.7 0.028 9.6E-07 57.8 5.4 28 190-217 27-54 (290)
267 1zp6_A Hypothetical protein AT 94.5 0.022 7.4E-07 54.7 3.8 24 194-217 9-32 (191)
268 1qhx_A CPT, protein (chloramph 94.3 0.02 6.9E-07 54.2 2.9 23 195-217 4-26 (178)
269 4h09_A Hypothetical leucine ri 94.2 0.12 4.2E-06 55.6 9.5 50 766-815 264-317 (379)
270 3lw7_A Adenylate kinase relate 94.2 0.023 7.9E-07 53.5 3.1 20 195-214 2-21 (179)
271 3vaa_A Shikimate kinase, SK; s 94.2 0.023 7.8E-07 55.0 3.1 24 194-217 25-48 (199)
272 1kgd_A CASK, peripheral plasma 94.1 0.025 8.5E-07 53.7 3.1 24 194-217 5-28 (180)
273 1ly1_A Polynucleotide kinase; 94.0 0.027 9.3E-07 53.4 3.3 22 195-216 3-24 (181)
274 3kb2_A SPBC2 prophage-derived 94.0 0.025 8.6E-07 53.1 3.0 23 195-217 2-24 (173)
275 1knq_A Gluconate kinase; ALFA/ 94.0 0.035 1.2E-06 52.4 4.0 25 193-217 7-31 (175)
276 2px0_A Flagellar biosynthesis 94.0 0.1 3.5E-06 53.8 7.8 24 194-217 105-128 (296)
277 3uie_A Adenylyl-sulfate kinase 93.9 0.032 1.1E-06 54.1 3.6 24 194-217 25-48 (200)
278 4h09_A Hypothetical leucine ri 93.9 0.15 5.3E-06 54.8 9.4 96 766-864 241-341 (379)
279 4gp7_A Metallophosphoesterase; 93.9 0.033 1.1E-06 52.4 3.5 23 194-216 9-31 (171)
280 2ga8_A Hypothetical 39.9 kDa p 93.7 0.056 1.9E-06 56.5 5.1 43 174-216 2-46 (359)
281 2pt7_A CAG-ALFA; ATPase, prote 93.7 0.3 1E-05 51.2 10.8 107 195-335 172-278 (330)
282 1kag_A SKI, shikimate kinase I 93.6 0.027 9.4E-07 52.9 2.5 23 195-217 5-27 (173)
283 3sr0_A Adenylate kinase; phosp 93.6 0.2 6.8E-06 48.4 8.6 22 196-217 2-23 (206)
284 3trf_A Shikimate kinase, SK; a 93.6 0.032 1.1E-06 53.2 2.9 24 194-217 5-28 (185)
285 3tau_A Guanylate kinase, GMP k 93.6 0.035 1.2E-06 54.1 3.2 24 194-217 8-31 (208)
286 3tr0_A Guanylate kinase, GMP k 93.6 0.037 1.3E-06 53.7 3.4 24 194-217 7-30 (205)
287 4eun_A Thermoresistant glucoki 93.6 0.034 1.2E-06 53.8 3.1 24 194-217 29-52 (200)
288 3tlx_A Adenylate kinase 2; str 93.5 0.051 1.7E-06 54.4 4.3 39 179-217 14-52 (243)
289 2rhm_A Putative kinase; P-loop 93.5 0.042 1.5E-06 52.7 3.6 24 194-217 5-28 (193)
290 1nks_A Adenylate kinase; therm 93.4 0.04 1.4E-06 52.9 3.2 23 195-217 2-24 (194)
291 3ice_A Transcription terminati 93.4 0.03 1E-06 58.8 2.4 53 182-236 163-216 (422)
292 2orw_A Thymidine kinase; TMTK, 93.4 0.011 3.7E-07 56.4 -0.9 23 195-217 4-26 (184)
293 3asz_A Uridine kinase; cytidin 93.4 0.045 1.5E-06 53.4 3.6 24 193-216 5-28 (211)
294 2xxa_A Signal recognition part 93.4 0.43 1.5E-05 52.0 11.6 38 180-217 79-123 (433)
295 3tqc_A Pantothenate kinase; bi 93.4 0.073 2.5E-06 55.3 5.3 43 174-216 70-114 (321)
296 1ye8_A Protein THEP1, hypothet 93.3 0.043 1.5E-06 51.9 3.2 22 196-217 2-23 (178)
297 2bdt_A BH3686; alpha-beta prot 93.3 0.045 1.5E-06 52.4 3.5 22 195-216 3-24 (189)
298 1gvn_B Zeta; postsegregational 93.3 0.071 2.4E-06 54.8 5.1 25 193-217 32-56 (287)
299 1g8p_A Magnesium-chelatase 38 93.3 0.039 1.3E-06 58.8 3.2 45 171-217 24-68 (350)
300 1vma_A Cell division protein F 93.3 0.18 6.2E-06 52.1 8.1 25 193-217 103-127 (306)
301 2qt1_A Nicotinamide riboside k 93.2 0.052 1.8E-06 52.8 3.8 24 193-216 20-43 (207)
302 3kl4_A SRP54, signal recogniti 93.2 0.2 6.7E-06 54.4 8.6 25 193-217 96-120 (433)
303 2ze6_A Isopentenyl transferase 93.2 0.044 1.5E-06 55.3 3.3 23 195-217 2-24 (253)
304 3t61_A Gluconokinase; PSI-biol 93.2 0.035 1.2E-06 53.8 2.5 24 194-217 18-41 (202)
305 1htw_A HI0065; nucleotide-bind 93.1 0.059 2E-06 49.7 3.8 25 193-217 32-56 (158)
306 1zuh_A Shikimate kinase; alpha 93.1 0.043 1.5E-06 51.3 2.9 24 194-217 7-30 (168)
307 2j41_A Guanylate kinase; GMP, 93.1 0.046 1.6E-06 53.1 3.2 24 194-217 6-29 (207)
308 3a00_A Guanylate kinase, GMP k 93.1 0.038 1.3E-06 52.8 2.5 23 195-217 2-24 (186)
309 2qor_A Guanylate kinase; phosp 93.1 0.037 1.3E-06 53.7 2.5 24 194-217 12-35 (204)
310 1lvg_A Guanylate kinase, GMP k 93.1 0.038 1.3E-06 53.4 2.5 23 194-216 4-26 (198)
311 3iij_A Coilin-interacting nucl 93.0 0.039 1.3E-06 52.3 2.5 24 194-217 11-34 (180)
312 1kht_A Adenylate kinase; phosp 93.0 0.046 1.6E-06 52.3 3.1 23 195-217 4-26 (192)
313 3bh0_A DNAB-like replicative h 93.0 0.18 6E-06 52.7 7.7 53 193-249 67-119 (315)
314 1sky_E F1-ATPase, F1-ATP synth 93.0 0.13 4.4E-06 56.0 6.7 61 183-245 141-202 (473)
315 3e70_C DPA, signal recognition 92.9 0.069 2.4E-06 55.9 4.4 26 192-217 127-152 (328)
316 3ney_A 55 kDa erythrocyte memb 92.9 0.051 1.7E-06 52.0 3.1 24 194-217 19-42 (197)
317 1uf9_A TT1252 protein; P-loop, 92.9 0.059 2E-06 52.2 3.6 25 192-216 6-30 (203)
318 1y63_A LMAJ004144AAA protein; 92.9 0.055 1.9E-06 51.5 3.3 23 194-216 10-32 (184)
319 4a1f_A DNAB helicase, replicat 92.8 0.27 9.4E-06 51.3 8.8 53 194-250 46-98 (338)
320 1znw_A Guanylate kinase, GMP k 92.8 0.054 1.8E-06 52.7 3.2 24 194-217 20-43 (207)
321 2jaq_A Deoxyguanosine kinase; 92.8 0.051 1.7E-06 52.6 3.1 22 196-217 2-23 (205)
322 3aez_A Pantothenate kinase; tr 92.8 0.061 2.1E-06 55.9 3.8 25 193-217 89-113 (312)
323 1tev_A UMP-CMP kinase; ploop, 92.8 0.059 2E-06 51.7 3.4 24 194-217 3-26 (196)
324 2hf9_A Probable hydrogenase ni 92.8 0.09 3.1E-06 51.8 4.9 38 178-217 24-61 (226)
325 1ex7_A Guanylate kinase; subst 92.7 0.037 1.3E-06 52.5 1.8 22 196-217 3-24 (186)
326 3umf_A Adenylate kinase; rossm 92.7 0.067 2.3E-06 52.2 3.7 26 192-217 27-52 (217)
327 1xjc_A MOBB protein homolog; s 92.7 0.056 1.9E-06 50.2 3.0 24 194-217 4-27 (169)
328 3a4m_A L-seryl-tRNA(SEC) kinas 92.7 0.061 2.1E-06 54.5 3.5 24 194-217 4-27 (260)
329 2if2_A Dephospho-COA kinase; a 92.7 0.054 1.9E-06 52.5 3.0 21 196-216 3-23 (204)
330 1tue_A Replication protein E1; 92.7 0.076 2.6E-06 50.6 3.9 37 180-217 45-81 (212)
331 1jjv_A Dephospho-COA kinase; P 92.7 0.063 2.2E-06 52.1 3.5 22 195-216 3-24 (206)
332 2yvu_A Probable adenylyl-sulfa 92.7 0.065 2.2E-06 51.1 3.5 24 194-217 13-36 (186)
333 4a74_A DNA repair and recombin 92.6 0.068 2.3E-06 52.9 3.8 46 193-238 24-73 (231)
334 1cke_A CK, MSSA, protein (cyti 92.6 0.056 1.9E-06 53.4 3.1 22 195-216 6-27 (227)
335 2c95_A Adenylate kinase 1; tra 92.6 0.058 2E-06 51.8 3.2 24 194-217 9-32 (196)
336 1via_A Shikimate kinase; struc 92.6 0.054 1.8E-06 51.1 2.8 22 196-217 6-27 (175)
337 1ukz_A Uridylate kinase; trans 92.6 0.069 2.4E-06 51.7 3.7 24 194-217 15-38 (203)
338 3b85_A Phosphate starvation-in 92.6 0.086 2.9E-06 51.2 4.2 22 196-217 24-45 (208)
339 3cm0_A Adenylate kinase; ATP-b 92.6 0.065 2.2E-06 51.0 3.4 23 194-216 4-26 (186)
340 2p5t_B PEZT; postsegregational 92.5 0.077 2.6E-06 53.5 4.0 40 178-217 13-55 (253)
341 1z6g_A Guanylate kinase; struc 92.5 0.053 1.8E-06 53.3 2.7 24 194-217 23-46 (218)
342 2jeo_A Uridine-cytidine kinase 92.5 0.075 2.6E-06 53.3 3.8 23 194-216 25-47 (245)
343 1g41_A Heat shock protein HSLU 92.5 0.065 2.2E-06 58.2 3.5 47 171-217 15-73 (444)
344 2plr_A DTMP kinase, probable t 92.4 0.071 2.4E-06 52.0 3.5 24 194-217 4-27 (213)
345 2iyv_A Shikimate kinase, SK; t 92.4 0.046 1.6E-06 52.0 2.1 21 196-216 4-24 (184)
346 1s96_A Guanylate kinase, GMP k 92.4 0.067 2.3E-06 52.5 3.2 24 194-217 16-39 (219)
347 2bbw_A Adenylate kinase 4, AK4 92.4 0.065 2.2E-06 53.8 3.2 23 194-216 27-49 (246)
348 3fwy_A Light-independent proto 92.4 0.074 2.5E-06 55.3 3.7 24 193-216 47-70 (314)
349 3p32_A Probable GTPase RV1496/ 92.3 0.12 4.1E-06 55.0 5.3 38 180-217 65-102 (355)
350 1e6c_A Shikimate kinase; phosp 92.2 0.054 1.9E-06 50.8 2.3 23 195-217 3-25 (173)
351 2ewv_A Twitching motility prot 92.2 0.25 8.6E-06 52.8 7.7 50 284-336 199-248 (372)
352 1rj9_A FTSY, signal recognitio 92.2 0.076 2.6E-06 54.9 3.6 24 194-217 102-125 (304)
353 3k1j_A LON protease, ATP-depen 92.2 0.075 2.6E-06 61.1 3.9 43 171-217 41-83 (604)
354 1uj2_A Uridine-cytidine kinase 92.2 0.077 2.6E-06 53.5 3.5 25 193-217 21-45 (252)
355 1qf9_A UMP/CMP kinase, protein 92.2 0.075 2.6E-06 50.8 3.3 24 194-217 6-29 (194)
356 2bwj_A Adenylate kinase 5; pho 92.1 0.071 2.4E-06 51.3 3.0 23 195-217 13-35 (199)
357 1zu4_A FTSY; GTPase, signal re 92.1 0.14 4.9E-06 53.3 5.5 25 193-217 104-128 (320)
358 2vli_A Antibiotic resistance p 92.1 0.052 1.8E-06 51.5 2.0 24 194-217 5-28 (183)
359 2pt5_A Shikimate kinase, SK; a 92.0 0.076 2.6E-06 49.5 3.1 22 196-217 2-23 (168)
360 2wsm_A Hydrogenase expression/ 92.0 0.093 3.2E-06 51.5 3.9 41 175-217 13-53 (221)
361 2cdn_A Adenylate kinase; phosp 92.0 0.075 2.6E-06 51.4 3.1 24 194-217 20-43 (201)
362 1pzn_A RAD51, DNA repair and r 92.0 0.24 8.3E-06 52.4 7.2 57 183-239 120-180 (349)
363 2og2_A Putative signal recogni 92.0 0.14 4.6E-06 54.2 5.2 25 193-217 156-180 (359)
364 4e22_A Cytidylate kinase; P-lo 91.9 0.082 2.8E-06 53.2 3.4 23 194-216 27-49 (252)
365 3lda_A DNA repair protein RAD5 91.9 0.23 7.7E-06 53.5 7.0 69 181-250 165-237 (400)
366 1j8m_F SRP54, signal recogniti 91.9 0.49 1.7E-05 48.6 9.3 24 194-217 98-121 (297)
367 3dm5_A SRP54, signal recogniti 91.9 0.27 9.3E-06 53.3 7.5 24 194-217 100-123 (443)
368 3l0o_A Transcription terminati 91.8 0.45 1.5E-05 50.0 8.7 36 181-217 163-198 (427)
369 2pbr_A DTMP kinase, thymidylat 91.8 0.082 2.8E-06 50.7 3.1 22 196-217 2-23 (195)
370 3b9q_A Chloroplast SRP recepto 91.8 0.097 3.3E-06 54.1 3.8 24 194-217 100-123 (302)
371 3tif_A Uncharacterized ABC tra 91.8 0.087 3E-06 52.3 3.3 23 194-216 31-53 (235)
372 2q6t_A DNAB replication FORK h 91.8 0.76 2.6E-05 50.4 11.3 67 180-250 187-253 (444)
373 2pez_A Bifunctional 3'-phospho 91.8 0.097 3.3E-06 49.5 3.5 24 194-217 5-28 (179)
374 2grj_A Dephospho-COA kinase; T 91.8 0.093 3.2E-06 50.2 3.3 24 193-216 11-34 (192)
375 1aky_A Adenylate kinase; ATP:A 91.7 0.084 2.9E-06 51.9 3.1 24 194-217 4-27 (220)
376 4akg_A Glutathione S-transfera 91.7 2.9 0.0001 55.7 18.1 208 197-501 1270-1515(2695)
377 2i3b_A HCR-ntpase, human cance 91.6 0.078 2.7E-06 50.6 2.6 22 196-217 3-24 (189)
378 1nn5_A Similar to deoxythymidy 91.6 0.09 3.1E-06 51.3 3.2 24 194-217 9-32 (215)
379 2wwf_A Thymidilate kinase, put 91.6 0.086 3E-06 51.4 3.0 24 194-217 10-33 (212)
380 1fx0_B ATP synthase beta chain 91.6 0.47 1.6E-05 51.7 8.9 64 182-247 154-218 (498)
381 1m7g_A Adenylylsulfate kinase; 91.5 0.11 3.7E-06 50.7 3.6 24 194-217 25-48 (211)
382 1b0u_A Histidine permease; ABC 91.5 0.16 5.3E-06 51.4 4.9 23 194-216 32-54 (262)
383 2ehv_A Hypothetical protein PH 91.5 0.094 3.2E-06 52.6 3.2 23 194-216 30-52 (251)
384 2onk_A Molybdate/tungstate ABC 91.5 0.096 3.3E-06 52.1 3.2 22 195-216 25-46 (240)
385 1zd8_A GTP:AMP phosphotransfer 91.5 0.088 3E-06 52.1 2.9 24 194-217 7-30 (227)
386 2pcj_A ABC transporter, lipopr 91.4 0.094 3.2E-06 51.6 3.1 23 194-216 30-52 (224)
387 2ck3_D ATP synthase subunit be 91.4 0.61 2.1E-05 50.6 9.5 64 182-247 142-206 (482)
388 2cbz_A Multidrug resistance-as 91.4 0.1 3.5E-06 51.8 3.3 24 194-217 31-54 (237)
389 3gfo_A Cobalt import ATP-bindi 91.3 0.16 5.4E-06 51.6 4.7 23 194-216 34-56 (275)
390 3llm_A ATP-dependent RNA helic 91.3 0.83 2.8E-05 45.2 10.0 32 180-215 66-97 (235)
391 2ffh_A Protein (FFH); SRP54, s 91.3 0.38 1.3E-05 52.0 7.8 24 194-217 98-121 (425)
392 2z0h_A DTMP kinase, thymidylat 91.2 0.1 3.5E-06 50.1 3.1 22 196-217 2-23 (197)
393 1sq5_A Pantothenate kinase; P- 91.2 0.12 4.1E-06 53.8 3.8 24 193-216 79-102 (308)
394 2v54_A DTMP kinase, thymidylat 91.2 0.1 3.6E-06 50.4 3.1 24 194-217 4-27 (204)
395 3fb4_A Adenylate kinase; psych 91.2 0.1 3.5E-06 51.0 3.1 22 196-217 2-23 (216)
396 2f1r_A Molybdopterin-guanine d 91.2 0.058 2E-06 50.5 1.1 23 195-217 3-25 (171)
397 1mv5_A LMRA, multidrug resista 91.1 0.13 4.3E-06 51.4 3.7 23 194-216 28-50 (243)
398 1zak_A Adenylate kinase; ATP:A 91.1 0.091 3.1E-06 51.7 2.6 24 194-217 5-28 (222)
399 1gtv_A TMK, thymidylate kinase 91.1 0.053 1.8E-06 53.0 0.9 22 196-217 2-23 (214)
400 3lnc_A Guanylate kinase, GMP k 91.1 0.075 2.6E-06 52.7 2.0 23 194-216 27-50 (231)
401 3d3q_A TRNA delta(2)-isopenten 91.0 0.11 3.9E-06 54.1 3.3 23 195-217 8-30 (340)
402 1np6_A Molybdopterin-guanine d 91.0 0.11 3.8E-06 48.7 2.9 24 194-217 6-29 (174)
403 2f6r_A COA synthase, bifunctio 91.0 0.13 4.6E-06 52.6 3.9 24 193-216 74-97 (281)
404 1vht_A Dephospho-COA kinase; s 91.0 0.13 4.5E-06 50.4 3.6 23 194-216 4-26 (218)
405 2olj_A Amino acid ABC transpor 91.0 0.12 4E-06 52.3 3.3 24 194-217 50-73 (263)
406 3dl0_A Adenylate kinase; phosp 91.0 0.11 3.8E-06 50.8 3.1 22 196-217 2-23 (216)
407 3cmu_A Protein RECA, recombina 90.9 0.4 1.4E-05 61.5 8.6 100 182-304 1414-1515(2050)
408 1svm_A Large T antigen; AAA+ f 90.9 0.18 6E-06 53.8 4.7 36 181-216 156-191 (377)
409 3a8t_A Adenylate isopentenyltr 90.8 0.14 5E-06 53.1 3.9 24 194-217 40-63 (339)
410 3nwj_A ATSK2; P loop, shikimat 90.8 0.098 3.3E-06 52.4 2.5 22 195-216 49-70 (250)
411 1vpl_A ABC transporter, ATP-bi 90.8 0.13 4.3E-06 51.8 3.3 24 194-217 41-64 (256)
412 4g1u_C Hemin import ATP-bindin 90.7 0.12 4.2E-06 52.3 3.1 23 194-216 37-59 (266)
413 1ji0_A ABC transporter; ATP bi 90.7 0.12 4.3E-06 51.4 3.2 24 194-217 32-55 (240)
414 1u0j_A DNA replication protein 90.7 0.22 7.6E-06 49.8 4.9 36 182-217 92-127 (267)
415 1sgw_A Putative ABC transporte 90.6 0.11 3.7E-06 50.7 2.6 23 195-217 36-58 (214)
416 1g6h_A High-affinity branched- 90.6 0.13 4.3E-06 51.9 3.2 23 194-216 33-55 (257)
417 2pze_A Cystic fibrosis transme 90.6 0.13 4.4E-06 50.8 3.2 24 194-217 34-57 (229)
418 2zu0_C Probable ATP-dependent 90.6 0.14 4.6E-06 52.0 3.4 24 194-217 46-69 (267)
419 2ghi_A Transport protein; mult 90.6 0.13 4.6E-06 51.8 3.3 24 194-217 46-69 (260)
420 2ixe_A Antigen peptide transpo 90.5 0.13 4.6E-06 52.1 3.3 24 194-217 45-68 (271)
421 3r20_A Cytidylate kinase; stru 90.5 0.13 4.5E-06 50.7 3.1 24 194-217 9-32 (233)
422 3exa_A TRNA delta(2)-isopenten 90.5 0.14 4.7E-06 52.5 3.3 24 194-217 3-26 (322)
423 2eyu_A Twitching motility prot 90.5 0.16 5.6E-06 51.2 3.9 51 283-336 87-137 (261)
424 3ake_A Cytidylate kinase; CMP 90.5 0.13 4.5E-06 49.8 3.1 21 196-216 4-24 (208)
425 2d2e_A SUFC protein; ABC-ATPas 90.5 0.14 4.7E-06 51.4 3.2 23 194-216 29-51 (250)
426 2ff7_A Alpha-hemolysin translo 90.5 0.13 4.6E-06 51.4 3.2 24 194-217 35-58 (247)
427 3crm_A TRNA delta(2)-isopenten 90.4 0.14 4.8E-06 53.0 3.3 23 195-217 6-28 (323)
428 2zej_A Dardarin, leucine-rich 90.4 0.13 4.6E-06 48.7 3.0 22 196-217 4-25 (184)
429 2yz2_A Putative ABC transporte 90.3 0.15 5E-06 51.8 3.3 24 194-217 33-56 (266)
430 1q57_A DNA primase/helicase; d 90.3 0.95 3.3E-05 50.6 10.4 54 193-249 241-294 (503)
431 1oix_A RAS-related protein RAB 90.3 0.14 4.8E-06 48.9 3.0 24 194-217 29-52 (191)
432 3be4_A Adenylate kinase; malar 90.2 0.12 4.2E-06 50.6 2.6 23 195-217 6-28 (217)
433 2dr3_A UPF0273 protein PH0284; 90.2 0.15 5.2E-06 50.9 3.4 39 194-234 23-61 (247)
434 2qi9_C Vitamin B12 import ATP- 90.2 0.15 5E-06 51.1 3.2 24 194-217 26-49 (249)
435 3thx_A DNA mismatch repair pro 90.2 1.2 4.2E-05 53.2 11.6 21 194-214 662-682 (934)
436 2v9p_A Replication protein E1; 90.1 0.22 7.7E-06 51.2 4.5 24 193-216 125-148 (305)
437 2wji_A Ferrous iron transport 90.1 0.18 6.1E-06 46.7 3.5 23 195-217 4-26 (165)
438 2xb4_A Adenylate kinase; ATP-b 90.0 0.15 5.1E-06 50.2 3.1 22 196-217 2-23 (223)
439 4eaq_A DTMP kinase, thymidylat 90.0 0.27 9.2E-06 48.5 4.9 25 193-217 25-49 (229)
440 2nq2_C Hypothetical ABC transp 90.0 0.15 5.3E-06 51.1 3.1 24 194-217 31-54 (253)
441 2ihy_A ABC transporter, ATP-bi 90.0 0.15 5.3E-06 51.9 3.2 24 194-217 47-70 (279)
442 2qmh_A HPR kinase/phosphorylas 89.9 0.17 6E-06 47.9 3.2 24 194-217 34-57 (205)
443 1e4v_A Adenylate kinase; trans 89.9 0.15 5.3E-06 49.7 3.0 22 196-217 2-23 (214)
444 2yhs_A FTSY, cell division pro 89.9 0.18 6.2E-06 55.2 3.8 25 193-217 292-316 (503)
445 1tq4_A IIGP1, interferon-induc 89.9 0.15 5E-06 55.0 3.1 34 183-216 58-91 (413)
446 3bgw_A DNAB-like replicative h 89.8 0.69 2.4E-05 50.6 8.5 65 179-248 183-247 (444)
447 2vp4_A Deoxynucleoside kinase; 89.8 0.16 5.6E-06 50.2 3.2 25 193-217 19-43 (230)
448 3foz_A TRNA delta(2)-isopenten 89.8 0.17 5.8E-06 51.7 3.3 24 194-217 10-33 (316)
449 1ak2_A Adenylate kinase isoenz 89.7 0.17 5.9E-06 50.1 3.2 23 195-217 17-39 (233)
450 2f9l_A RAB11B, member RAS onco 89.7 0.16 5.3E-06 48.9 2.8 23 195-217 6-28 (199)
451 1yrb_A ATP(GTP)binding protein 89.6 0.19 6.6E-06 50.7 3.7 24 194-217 14-37 (262)
452 2qm8_A GTPase/ATPase; G protei 89.5 0.3 1E-05 51.3 5.1 34 183-216 44-77 (337)
453 2dyk_A GTP-binding protein; GT 89.5 0.21 7.2E-06 45.8 3.5 23 195-217 2-24 (161)
454 1ltq_A Polynucleotide kinase; 89.4 0.18 6.3E-06 52.2 3.3 22 195-216 3-24 (301)
455 1pgv_A TMD-1, tropomodulin TMD 89.3 0.19 6.4E-06 47.9 3.0 68 592-662 35-108 (197)
456 1fzq_A ADP-ribosylation factor 89.2 0.26 8.8E-06 46.5 4.0 25 193-217 15-39 (181)
457 1cr0_A DNA primase/helicase; R 89.2 0.19 6.6E-06 51.9 3.3 24 194-217 35-58 (296)
458 3sop_A Neuronal-specific septi 89.2 0.19 6.5E-06 51.0 3.1 22 196-217 4-25 (270)
459 3zvl_A Bifunctional polynucleo 89.0 0.2 6.9E-06 54.5 3.4 25 193-217 257-281 (416)
460 2pjz_A Hypothetical protein ST 89.0 0.2 6.9E-06 50.5 3.2 22 195-216 31-52 (263)
461 1nlf_A Regulatory protein REPA 89.0 0.2 6.8E-06 51.3 3.2 23 194-216 30-52 (279)
462 2bbs_A Cystic fibrosis transme 89.0 0.21 7.1E-06 51.2 3.3 24 194-217 64-87 (290)
463 2ce2_X GTPase HRAS; signaling 89.0 0.2 6.8E-06 46.1 2.9 22 196-217 5-26 (166)
464 2v3c_C SRP54, signal recogniti 88.9 0.22 7.5E-06 54.2 3.6 38 180-217 78-122 (432)
465 1a7j_A Phosphoribulokinase; tr 88.9 0.12 4.2E-06 53.1 1.5 23 194-216 5-27 (290)
466 3cmu_A Protein RECA, recombina 88.9 0.72 2.5E-05 59.2 8.6 106 176-304 364-471 (2050)
467 3vr4_D V-type sodium ATPase su 88.9 0.4 1.4E-05 51.6 5.5 65 182-247 140-207 (465)
468 1ls1_A Signal recognition part 88.8 0.24 8.3E-06 51.0 3.7 24 194-217 98-121 (295)
469 2nzj_A GTP-binding protein REM 88.8 0.22 7.6E-06 46.4 3.1 23 195-217 5-27 (175)
470 1z2a_A RAS-related protein RAB 88.7 0.21 7.3E-06 46.1 2.9 23 195-217 6-28 (168)
471 3rfe_A Platelet glycoprotein I 88.7 0.46 1.6E-05 42.0 5.0 23 640-662 42-65 (130)
472 3nh6_A ATP-binding cassette SU 88.7 0.16 5.4E-06 52.5 2.1 23 194-216 80-102 (306)
473 2wjg_A FEOB, ferrous iron tran 88.7 0.26 8.9E-06 46.7 3.6 23 195-217 8-30 (188)
474 2j37_W Signal recognition part 88.6 0.37 1.3E-05 53.4 5.1 38 180-217 80-124 (504)
475 2p67_A LAO/AO transport system 88.5 0.38 1.3E-05 50.8 5.0 25 192-216 54-78 (341)
476 3kta_A Chromosome segregation 88.4 0.24 8.3E-06 46.7 3.2 21 196-216 28-48 (182)
477 4edh_A DTMP kinase, thymidylat 88.4 0.57 2E-05 45.5 5.8 24 194-217 6-29 (213)
478 2r9v_A ATP synthase subunit al 88.3 0.54 1.9E-05 51.3 6.1 60 182-246 164-226 (515)
479 1q3t_A Cytidylate kinase; nucl 88.3 0.24 8.4E-06 49.1 3.2 24 193-216 15-38 (236)
480 2gj8_A MNME, tRNA modification 88.3 0.24 8.1E-06 46.3 3.0 23 195-217 5-27 (172)
481 2qtf_A Protein HFLX, GTP-bindi 88.3 0.56 1.9E-05 49.8 6.1 24 194-217 179-202 (364)
482 3con_A GTPase NRAS; structural 88.3 0.23 8E-06 47.1 2.9 22 196-217 23-44 (190)
483 3tui_C Methionine import ATP-b 88.2 0.26 8.7E-06 52.0 3.4 23 194-216 54-76 (366)
484 3eph_A TRNA isopentenyltransfe 88.2 0.26 8.8E-06 52.5 3.4 24 194-217 2-25 (409)
485 3q72_A GTP-binding protein RAD 88.2 0.23 7.9E-06 45.8 2.8 22 196-217 4-25 (166)
486 2lkc_A Translation initiation 88.2 0.38 1.3E-05 44.9 4.4 24 194-217 8-31 (178)
487 3lv8_A DTMP kinase, thymidylat 88.1 0.45 1.5E-05 47.0 4.9 37 194-231 27-63 (236)
488 3f9v_A Minichromosome maintena 88.1 0.16 5.3E-06 58.1 1.8 46 172-217 296-350 (595)
489 3mfy_A V-type ATP synthase alp 88.1 1.1 3.6E-05 49.4 8.1 59 182-245 216-275 (588)
490 2erx_A GTP-binding protein DI- 88.1 0.26 8.7E-06 45.7 3.0 22 196-217 5-26 (172)
491 3gqb_B V-type ATP synthase bet 88.1 0.2 6.9E-06 53.9 2.5 63 183-246 137-209 (464)
492 2ged_A SR-beta, signal recogni 88.1 0.24 8.4E-06 47.1 2.9 24 194-217 48-71 (193)
493 3q85_A GTP-binding protein REM 88.1 0.26 8.9E-06 45.6 3.1 21 196-216 4-24 (169)
494 1u8z_A RAS-related protein RAL 88.0 0.25 8.7E-06 45.5 2.9 23 195-217 5-27 (168)
495 2f7s_A C25KG, RAS-related prot 88.0 2 6.9E-05 41.5 9.7 23 195-217 26-48 (217)
496 1z08_A RAS-related protein RAB 87.9 0.33 1.1E-05 44.9 3.8 23 195-217 7-29 (170)
497 3fvq_A Fe(3+) IONS import ATP- 87.9 0.27 9.2E-06 51.8 3.3 23 194-216 30-52 (359)
498 3end_A Light-independent proto 87.9 0.29 1E-05 50.8 3.7 25 193-217 40-64 (307)
499 2ocp_A DGK, deoxyguanosine kin 87.8 0.3 1E-05 48.7 3.5 24 194-217 2-25 (241)
500 1m7b_A RND3/RHOE small GTP-bin 87.7 0.26 8.9E-06 46.6 2.9 23 195-217 8-30 (184)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.9e-48 Score=445.41 Aligned_cols=323 Identities=15% Similarity=0.206 Sum_probs=258.2
Q ss_pred ccchhcHHHHHHHHhcC-CCCcEEEEEEccCCCCHHHHHHHHhc--ccCccCCCceeEEEEeCCCC--CHHHHHHHHHHH
Q 048733 174 VGIESIKDKLIDLMLNG-RSKRSVVAVVGEGGLGKTTLAGKLFN--NEGLKTHFSCRAWVTVGKEY--NKNDLLRTIIKE 248 (887)
Q Consensus 174 vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i~~~ 248 (887)
|||+.++++|.++|... ++..++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ ++..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999765 44689999999999999999999998 67899999999999999985 789999999999
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCC-ceEEEEeccCChhHHHHHHHhcCCCCCCcEEEE
Q 048733 249 FHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDK-SYMVVLDDVWKIDFWRDVEHALLDNKKCSRIIV 327 (887)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k-r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiv 327 (887)
++..... .........+.+.+...+++.|+++ ||||||||||+.+.+ .+.. .+||+|||
T Consensus 211 l~~~~~~--------------~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilv 270 (549)
T 2a5y_B 211 LKSEDDL--------------LNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLV 270 (549)
T ss_dssp HTTTSCC--------------TTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEE
T ss_pred HhcCccc--------------ccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEE
Confidence 9764210 0001123345678899999999996 999999999998865 2221 16999999
Q ss_pred EccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHhhhhcCCC
Q 048733 328 TTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSTKN 407 (887)
Q Consensus 328 TtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~l~~~~ 407 (887)
|||+..++..++.. ...|+|++|+.++||+||.+++|+.. .++.+.+++++|+++|+|+||||+++|+.++.+.
T Consensus 271 TTR~~~v~~~~~~~--~~~~~l~~L~~~ea~~Lf~~~a~~~~----~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~ 344 (549)
T 2a5y_B 271 TTRDVEISNAASQT--CEFIEVTSLEIDECYDFLEAYGMPMP----VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT 344 (549)
T ss_dssp EESBGGGGGGCCSC--EEEEECCCCCHHHHHHHHHHTSCCCC------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS
T ss_pred EcCCHHHHHHcCCC--CeEEECCCCCHHHHHHHHHHHhcCCC----CchhHHHHHHHHHHHhCCChHHHHHHHHHhccch
Confidence 99999998876422 26799999999999999999987653 2467889999999999999999999999997652
Q ss_pred CCHHHHHHHHHHhccccCCCCCccchHHHHhhcccCCChhhHHHHh-----------hhcccCCCcccChhHHHHHHHHc
Q 048733 408 RIVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYYDLPHHLKSCLL-----------YFGLFPESCKINRGRLIRLWIAE 476 (887)
Q Consensus 408 ~~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~Lp~~~k~cf~-----------~~s~fp~~~~i~~~~li~~w~a~ 476 (887)
.+|...+....+.. ....+.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+
T Consensus 345 ---w~~~~~l~~~l~~~----~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~ 413 (549)
T 2a5y_B 345 ---FEKMAQLNNKLESR----GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCV 413 (549)
T ss_dssp ---HHHHHHHHHHHHHH----CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHH
T ss_pred ---HHHHHHhHHHhhcc----cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeee
Confidence 33433333322221 1246788899999999999999999 999999999998 8999999
Q ss_pred --CccccCC-CCCHHHHHHHHHHHHhhcCCeeeeecCCCCceeEEEeCHHHHHHHHHhhhhcCc
Q 048733 477 --GLVQYSK-RFTSEQVAAEYLDELIDRSLVQVSNREIPGRAIICHVHDLMHEIIIRKTEELGF 537 (887)
Q Consensus 477 --g~i~~~~-~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~Hdlv~~~~~~~~~~e~~ 537 (887)
||+.... +.+.+++++ ||++|+++||++....+ ...+|+|||+||+||++++.++++
T Consensus 414 ~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 414 IPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp SCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred ccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 9997665 667788887 99999999999987643 345799999999999998877654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.7e-39 Score=372.19 Aligned_cols=297 Identities=17% Similarity=0.211 Sum_probs=233.8
Q ss_pred ccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCce-eEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 172 EVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSC-RAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
..|||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|+..+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 34999999999999998643 3789999999999999999999998778889987 899999999999888888888765
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh---CCCceEEEEeccCChhHHHHHHHhcCCCCCCcEEEE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL---KDKSYMVVLDDVWKIDFWRDVEHALLDNKKCSRIIV 327 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L---~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiv 327 (887)
......... .... .....+.+.+.+.+++.| .++|+||||||||+.+.|+.+ + +||+|||
T Consensus 208 ~i~~~~~~~---------~d~~-~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~---pGSRILV 270 (1221)
T 1vt4_I 208 QIDPNWTSR---------SDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----N---LSCKILL 270 (1221)
T ss_dssp HHCSSSTTT---------SCCC-SSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----H---SSCCEEE
T ss_pred hcCcccccc---------cccc-cCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh----C---CCeEEEE
Confidence 432100000 0000 000112456677777766 789999999999998888764 2 6899999
Q ss_pred EccchhHHhhhccCCCcceeecC------CCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHhh
Q 048733 328 TTRHMNVAKFCKLSSSVRIHELE------TLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGG 401 (887)
Q Consensus 328 TtR~~~v~~~~~~~~~~~~~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 401 (887)
|||+..++..+... ..+.++ +|+.+|||+||.+.. +.. . .++..+| |+|+||||+++|+
T Consensus 271 TTRd~~Va~~l~g~---~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~---eeL~~eI---CgGLPLALkLaGs 335 (1221)
T 1vt4_I 271 TTRFKQVTDFLSAA---TTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----P---QDLPREV---LTTNPRRLSIIAE 335 (1221)
T ss_dssp ECSCSHHHHHHHHH---SSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----T---TTHHHHH---CCCCHHHHHHHHH
T ss_pred eccChHHHHhcCCC---eEEEecCccccCCcCHHHHHHHHHHHc-CCC-----H---HHHHHHH---hCCCHHHHHHHHH
Confidence 99999988654322 356666 999999999999984 221 1 2233333 9999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHhccccCCCCCccchHHHHhhcccCCChhh-HHHHhhhcccCCCcccChhHHHHHHHHcCccc
Q 048733 402 LLSTKNRIVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYYDLPHHL-KSCLLYFGLFPESCKINRGRLIRLWIAEGLVQ 480 (887)
Q Consensus 402 ~l~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~Lp~~~-k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~ 480 (887)
.|+.+..+..+|... ....+..+|.+||+.||++. |.||+|||+||+++.|+++.++.+|+++|
T Consensus 336 ~Lr~k~~s~eeW~~~------------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG--- 400 (1221)
T 1vt4_I 336 SIRDGLATWDNWKHV------------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI--- 400 (1221)
T ss_dssp HHHHSCSSHHHHHHC------------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---
T ss_pred HHhCCCCCHHHHhcC------------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC---
Confidence 999886557888753 12579999999999999999 99999999999999999999999998887
Q ss_pred cCCCCCHHHHHHHHHHHHhhcCCeeeeecCCCCceeEEEeCHHHHHHH
Q 048733 481 YSKRFTSEQVAAEYLDELIDRSLVQVSNREIPGRAIICHVHDLMHEII 528 (887)
Q Consensus 481 ~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~Hdlv~~~~ 528 (887)
++.++.+|++|+++||++... ...+|+|||++++++
T Consensus 401 -------eedAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 401 -------KSDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELK 436 (1221)
T ss_dssp -------SHHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHH
T ss_pred -------HHHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHh
Confidence 135889999999999999842 224799999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.4e-38 Score=404.70 Aligned_cols=320 Identities=18% Similarity=0.278 Sum_probs=254.7
Q ss_pred CcccCccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCc-cCCC-ceeEEEEeCCCCC--HHHHH
Q 048733 167 FVEDDEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGL-KTHF-SCRAWVTVGKEYN--KNDLL 242 (887)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~v~~~~~--~~~~~ 242 (887)
+.....||||++++++|.++|...++..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 344567999999999999999876667899999999999999999999997433 4555 5677999988644 33446
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCC--ceEEEEeccCChhHHHHHHHhcCCCC
Q 048733 243 RTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDK--SYMVVLDDVWKIDFWRDVEHALLDNK 320 (887)
Q Consensus 243 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVlDdv~~~~~~~~l~~~l~~~~ 320 (887)
..++..+..... .......+.+.+.+.++..+.++ |+||||||||+.+.|..+ +
T Consensus 200 ~~~~~~l~~~~~-----------------~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~ 255 (1249)
T 3sfz_A 200 QNLCMRLDQEES-----------------FSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------D 255 (1249)
T ss_dssp HHHHHHHTTTCT-----------------TCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------C
T ss_pred HHHHHHhhhhcc-----------------cccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------c
Confidence 666666654321 00112346788999999999887 999999999998776543 6
Q ss_pred CCcEEEEEccchhHHhhhccCCCcceeecCC-CChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 048733 321 KCSRIIVTTRHMNVAKFCKLSSSVRIHELET-LPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAV 399 (887)
Q Consensus 321 ~gs~iivTtR~~~v~~~~~~~~~~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 399 (887)
+||+||||||++.++..+.. ....+.+++ |+.+++++||...++.. .+...+++++|+++|+|+||||+++
T Consensus 256 ~~~~ilvTtR~~~~~~~~~~--~~~~~~~~~~l~~~~a~~l~~~~~~~~------~~~~~~~~~~i~~~~~glPLal~~~ 327 (1249)
T 3sfz_A 256 NQCQILLTTRDKSVTDSVMG--PKHVVPVESGLGREKGLEILSLFVNMK------KEDLPAEAHSIIKECKGSPLVVSLI 327 (1249)
T ss_dssp SSCEEEEEESSTTTTTTCCS--CBCCEECCSSCCHHHHHHHHHHHHTSC------STTCCTHHHHHHHHTTTCHHHHHHH
T ss_pred CCCEEEEEcCCHHHHHhhcC--CceEEEecCCCCHHHHHHHHHHhhCCC------hhhCcHHHHHHHHHhCCCHHHHHHH
Confidence 78999999999998854322 237889996 99999999999988433 2344567899999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHhccccCC------CCCccchHHHHhhcccCCChhhHHHHhhhcccCCCcccChhHHHHHH
Q 048733 400 GGLLSTKNRIVSEWKKLFDRLGSMLGS------DPHLKDCNRVLSEGYYDLPHHLKSCLLYFGLFPESCKINRGRLIRLW 473 (887)
Q Consensus 400 ~~~l~~~~~~~~~w~~~~~~~~~~~~~------~~~~~~i~~~l~~sy~~Lp~~~k~cf~~~s~fp~~~~i~~~~li~~w 473 (887)
|++|+.+.. .|...++.+...... ......+..+|.+||+.||+++|.||+|||+||+++.|++..++.+|
T Consensus 328 ~~~l~~~~~---~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~ 404 (1249)
T 3sfz_A 328 GALLRDFPN---RWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 404 (1249)
T ss_dssp HHHHHHSSS---CHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHH
T ss_pred HHHhhcChh---HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHh
Confidence 999988764 577777666433211 12235689999999999999999999999999999999999999999
Q ss_pred HHcCccccCCCCCHHHHHHHHHHHHhhcCCeeeeecCCCCceeEEEeCHHHHHHHHHhhhhc
Q 048733 474 IAEGLVQYSKRFTSEQVAAEYLDELIDRSLVQVSNREIPGRAIICHVHDLMHEIIIRKTEEL 535 (887)
Q Consensus 474 ~a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~Hdlv~~~~~~~~~~e 535 (887)
.++ ++.+++++++|+++||++... +++..+|+||+++|+|++..+.++
T Consensus 405 ~~~-----------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 405 DLE-----------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TCC-----------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCC-----------HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 554 467899999999999999765 445568999999999999987665
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=345.40 Aligned_cols=314 Identities=20% Similarity=0.315 Sum_probs=240.0
Q ss_pred cCccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCc-cCCC-ceeEEEEeCCCCCHHHHHHHHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGL-KTHF-SCRAWVTVGKEYNKNDLLRTIIK 247 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~v~~~~~~~~~~~~i~~ 247 (887)
...||||+.++++|.++|....+..++|+|+||||+||||||.+++++.++ ..+| +.++|++++.. +...++..+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~ 201 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQN 201 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHH
Confidence 457999999999999999875556889999999999999999999997555 7789 47999999765 44444444433
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCC--CceEEEEeccCChhHHHHHHHhcCCCCCCcEE
Q 048733 248 EFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKD--KSYMVVLDDVWKIDFWRDVEHALLDNKKCSRI 325 (887)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~i 325 (887)
........ ..+......+.+.+...++..+.+ +++||||||+|+.+.+.. + +.|++|
T Consensus 202 l~~~l~~~--------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~i 260 (591)
T 1z6t_A 202 LCTRLDQD--------------ESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQI 260 (591)
T ss_dssp HHHHHCSS--------------CCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEE
T ss_pred HHHHhccc--------------cccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----h---cCCCeE
Confidence 22111100 000011223557788888888866 789999999998765442 2 568999
Q ss_pred EEEccchhHHhhhccCCCcceeec---CCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHhhh
Q 048733 326 IVTTRHMNVAKFCKLSSSVRIHEL---ETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGL 402 (887)
Q Consensus 326 ivTtR~~~v~~~~~~~~~~~~~~l---~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 402 (887)
|||||+..++..+.. ..+++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||..+|+.
T Consensus 261 lvTsR~~~~~~~~~~----~~~~v~~l~~L~~~ea~~L~~~~~~~~------~~~~~~~~~~i~~~~~G~PLal~~~a~~ 330 (591)
T 1z6t_A 261 LLTTRDKSVTDSVMG----PKYVVPVESSLGKEKGLEILSLFVNMK------KADLPEQAHSIIKECKGSPLVVSLIGAL 330 (591)
T ss_dssp EEEESCGGGGTTCCS----CEEEEECCSSCCHHHHHHHHHHHHTSC------GGGSCTHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEECCCcHHHHhcCC----CceEeecCCCCCHHHHHHHHHHHhCCC------cccccHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999999988765432 33443 6899999999999998542 1223467889999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHhccccCC------CCCccchHHHHhhcccCCChhhHHHHhhhcccCCCcccChhHHHHHHHHc
Q 048733 403 LSTKNRIVSEWKKLFDRLGSMLGS------DPHLKDCNRVLSEGYYDLPHHLKSCLLYFGLFPESCKINRGRLIRLWIAE 476 (887)
Q Consensus 403 l~~~~~~~~~w~~~~~~~~~~~~~------~~~~~~i~~~l~~sy~~Lp~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~ 476 (887)
++... ..|...++.+...... .....++..++..||+.||++.|.||.+||+||+++.|+...+...|.++
T Consensus 331 l~~~~---~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~ 407 (591)
T 1z6t_A 331 LRDFP---NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME 407 (591)
T ss_dssp HHHST---TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC
T ss_pred HhcCc---hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC
Confidence 98764 3688777776543211 11235789999999999999999999999999999999999999999542
Q ss_pred CccccCCCCCHHHHHHHHHHHHhhcCCeeeeecCCCCceeEEEeCHHHHHHHHHhh
Q 048733 477 GLVQYSKRFTSEQVAAEYLDELIDRSLVQVSNREIPGRAIICHVHDLMHEIIIRKT 532 (887)
Q Consensus 477 g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~Hdlv~~~~~~~~ 532 (887)
.+.+..++++|+++||++... ++...+|+||+++|++++...
T Consensus 408 -----------~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 -----------TEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp -----------HHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred -----------HHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 345788999999999999654 334468999999999999874
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=4.4e-21 Score=209.19 Aligned_cols=285 Identities=14% Similarity=0.161 Sum_probs=157.0
Q ss_pred CCceEEEEecCCCccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecC
Q 048733 550 SKTRRITIQRSIDDGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNAR 629 (887)
Q Consensus 550 ~~~r~lsi~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 629 (887)
..++++.+.++..........+++|++|.+.++... .+. . +.++++|++|+|++|.+..+| .+..+++|++|+++
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~--~~~-~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT--DIS-P-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC--CCG-G-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCccc--cch-h-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 456777777655433323445777888887776542 222 2 677788888888888777765 57778888888777
Q ss_pred CCc--------------eeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhccCCcccccccccccccc
Q 048733 630 NTK--------------ILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLL 695 (887)
Q Consensus 630 ~~~--------------~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~ 695 (887)
+|. +|++++|.....+..+.++++|++|++++| ....++. ++.+++|+.|+
T Consensus 119 ~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-----------~~~~~~~-~~~l~~L~~L~--- 183 (347)
T 4fmz_A 119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-----------KVKDVTP-IANLTDLYSLS--- 183 (347)
T ss_dssp TSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-----------CCCCCGG-GGGCTTCSEEE---
T ss_pred CCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-----------CcCCchh-hccCCCCCEEE---
Confidence 664 333444422222223555555555555554 1222222 45555666555
Q ss_pred ccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeec
Q 048733 696 ALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGN 775 (887)
Q Consensus 696 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 775 (887)
++.+.+..... +..+++|+.|+++++..... .. +..+++|+.|++++|....... +...+ +|+.|++++|
T Consensus 184 -l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~-~~~~~~L~~L~l~~n~l~~~~~---~~~l~-~L~~L~l~~n 253 (347)
T 4fmz_A 184 -LNYNQIEDISP--LASLTSLHYFTAYVNQITDI--TP-VANMTRLNSLKIGNNKITDLSP---LANLS-QLTWLEIGTN 253 (347)
T ss_dssp -CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEECCSSCCCCCGG---GTTCT-TCCEEECCSS
T ss_pred -ccCCccccccc--ccCCCccceeecccCCCCCC--ch-hhcCCcCCEEEccCCccCCCcc---hhcCC-CCCEEECCCC
Confidence 44444322211 55566666666654322211 11 5556666666666654433221 23333 6666666665
Q ss_pred c-CCCChhhhcCCCcceeEEEecccCCcC-cCcCcccceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCCccccccc
Q 048733 776 M-KKLPDWILKLKNLIGSRLILSGLTEDP-ISWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGID 853 (887)
Q Consensus 776 ~-~~lp~~~~~l~~L~~L~L~~~~l~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~ 853 (887)
. ..++ .+..+++|+.|++++|.+...+ +..+++|+.|++.+|.-....+..++.+|+|+.|++++|+ ++.++. +.
T Consensus 254 ~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~ 330 (347)
T 4fmz_A 254 QISDIN-AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LA 330 (347)
T ss_dssp CCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GG
T ss_pred ccCCCh-hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-hh
Confidence 3 3333 4556666666666666665532 3456666666666664322223334556677777777666 344433 56
Q ss_pred cCCCCCEEEEEech
Q 048733 854 HLRNLELLTFHDMS 867 (887)
Q Consensus 854 ~l~~L~~L~l~~c~ 867 (887)
.+++|++|++++|+
T Consensus 331 ~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 331 SLSKMDSADFANQV 344 (347)
T ss_dssp GCTTCSEESSSCC-
T ss_pred hhhccceeehhhhc
Confidence 66777777766665
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=2.1e-21 Score=234.12 Aligned_cols=300 Identities=19% Similarity=0.228 Sum_probs=201.2
Q ss_pred CCCceEEEEecCCCccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCC-CCccccccccccceee
Q 048733 549 CSKTRRITIQRSIDDGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPIN-YLPEGVGNLFNLHLLN 627 (887)
Q Consensus 549 ~~~~r~lsi~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~ 627 (887)
...++++.+..+..........+++|+.|.+.++... ..++. +.++++|++|+|++|.+. .+|..++++++|++|+
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS--TGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCC--SCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCC--CCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEE
Confidence 3456777777654433323467788888888887652 23333 788888999999998887 5678888889999998
Q ss_pred cCCCc--------------eeeecCcccc-ccchhhhcc-cccCeeeecccccccccccchhhhhhccCCcccccccccc
Q 048733 628 ARNTK--------------ILDLAHTFVS-ELPEEIRNL-KKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSL 691 (887)
Q Consensus 628 L~~~~--------------~Ldl~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L 691 (887)
+++|. +|++++|.+. .+|..+.++ ++|++|++++|. ....+|..++++++|++|
T Consensus 254 Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~----------l~~~~p~~~~~l~~L~~L 323 (768)
T 3rgz_A 254 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH----------FYGAVPPFFGSCSLLESL 323 (768)
T ss_dssp CCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE----------EEECCCGGGGGCTTCCEE
T ss_pred CCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc----------CCCccchHHhcCCCccEE
Confidence 88875 7888888776 788887765 889999998872 223566678888888888
Q ss_pred ccccccCceecchHHH-HHhhccccccceeEEeccCChhHHHHHHhccc-CCcEEEEeecCCccccc-------------
Q 048733 692 RGLLALPTIEADSQVL-KELMMLRQLNMLSIRRQNGNGRDLCALIANLE-NVETLGVLMKSKEEILD------------- 756 (887)
Q Consensus 692 ~~~~~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~-~L~~L~l~~~~~~~~~~------------- 756 (887)
+ ++.+.+.+..+ ..+..+++|+.|+++.+... ..++..+.+++ +|+.|++++|...+...
T Consensus 324 ~----L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 324 A----LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS-GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp E----CCSSEEEEECCHHHHTTCTTCCEEECCSSEEE-ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred E----CCCCcccCcCCHHHHhcCCCCCEEeCcCCccC-ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 8 66666654433 34788888888888763221 12334444554 66666666553322110
Q ss_pred -----------c-CcccccccccceeEEeecc--CCCChhhhcCCCcceeEEEecccCCcC---cCcCcccceeeeCcCC
Q 048733 757 -----------L-QSLSSPPQHLQYLSLRGNM--KKLPDWILKLKNLIGSRLILSGLTEDP---ISWFPKLRKLVLLNFE 819 (887)
Q Consensus 757 -----------l-~~l~~~~~~L~~L~L~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~ 819 (887)
+ ..+...+ +|+.|++++|. +.+|..+..+++|+.|+|++|.+.... +..+++|+.|++.++.
T Consensus 399 L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp EECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EECCCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence 0 1122222 66666666653 356666666667777777666665432 2256677777777765
Q ss_pred CceeEEEcCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 820 AVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 820 ~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
....+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|.
T Consensus 478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 444566667778888888888888666788888888888888888875
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=213.54 Aligned_cols=290 Identities=19% Similarity=0.155 Sum_probs=213.8
Q ss_pred CCCCceEEEEecCCCccc--cccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccc-cccccccc
Q 048733 548 HCSKTRRITIQRSIDDGA--LESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEG-VGNLFNLH 624 (887)
Q Consensus 548 ~~~~~r~lsi~~~~~~~~--~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~L~ 624 (887)
.+..+++|.+..+..... .....+++|+.|.+.++.. ....+..|.++++|++|+|++|.+..+|.. +.++++|+
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc--CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCC
Confidence 345677887776654322 2345677888888877754 334456677888888888888888877654 67788888
Q ss_pred eeecCCCceeeecCcccccc-chhhhcccccCeeeecccccccccccchhhhhhc-cCCccccccccccccccccCceec
Q 048733 625 LLNARNTKILDLAHTFVSEL-PEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKI-HRGFGSLRGLQSLRGLLALPTIEA 702 (887)
Q Consensus 625 ~L~L~~~~~Ldl~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-p~~i~~L~~L~~L~~~~~l~~~~~ 702 (887)
+|+|++|. +..+ |..+.++++|++|++++| ....+ |..++.+++|+.|. ++.+.+
T Consensus 108 ~L~Ls~n~--------i~~~~~~~~~~l~~L~~L~l~~n-----------~l~~~~~~~~~~l~~L~~L~----l~~n~l 164 (477)
T 2id5_A 108 KLDISENK--------IVILLDYMFQDLYNLKSLEVGDN-----------DLVYISHRAFSGLNSLEQLT----LEKCNL 164 (477)
T ss_dssp EEECTTSC--------CCEECTTTTTTCTTCCEEEECCT-----------TCCEECTTSSTTCTTCCEEE----EESCCC
T ss_pred EEECCCCc--------cccCChhHccccccCCEEECCCC-----------ccceeChhhccCCCCCCEEE----CCCCcC
Confidence 88777654 5554 557789999999999987 33333 45688899999998 667777
Q ss_pred chHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeec-cCCCCh
Q 048733 703 DSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGN-MKKLPD 781 (887)
Q Consensus 703 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~ 781 (887)
.......+..+++|+.|+++.+.... ..+..+.++++|+.|++++|...+... ....... +|+.|+|++| +..+|.
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~-~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMT-PNCLYGL-NLTSLSITHCNLTAVPY 241 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEEC-TTTTTTC-CCSEEEEESSCCCSCCH
T ss_pred cccChhHhcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccC-cccccCc-cccEEECcCCcccccCH
Confidence 66667778999999999998743322 122356778999999999876554432 2222333 8999999987 467774
Q ss_pred -hhhcCCCcceeEEEecccCCcC---cCcCcccceeeeCcCCCceeE-EEcCCCccCccEEEEccCCCCCcccc-ccccC
Q 048733 782 -WILKLKNLIGSRLILSGLTEDP---ISWFPKLRKLVLLNFEAVKSV-IIEKGAMPDIRELWIGPCPLLMEIPI-GIDHL 855 (887)
Q Consensus 782 -~~~~l~~L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~-~~~~~~lp~L~~L~l~~c~~l~~lp~-~~~~l 855 (887)
.+..+++|+.|+|++|.+...+ +..+++|+.|.+.++. +..+ +..+..+++|+.|++++|. ++.+|. .+..+
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 319 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSV 319 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCG
T ss_pred HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCC
Confidence 5778999999999999987654 4478899999999875 4444 4457789999999999997 555655 56899
Q ss_pred CCCCEEEEEech
Q 048733 856 RNLELLTFHDMS 867 (887)
Q Consensus 856 ~~L~~L~l~~c~ 867 (887)
++|++|++++||
T Consensus 320 ~~L~~L~l~~N~ 331 (477)
T 2id5_A 320 GNLETLILDSNP 331 (477)
T ss_dssp GGCCEEECCSSC
T ss_pred cccCEEEccCCC
Confidence 999999999988
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=6.8e-21 Score=224.31 Aligned_cols=298 Identities=14% Similarity=0.141 Sum_probs=230.4
Q ss_pred CCCceEEEEecCCC--ccccccCCCCceeEEEeecCCCCCccccccccCC------CceeEEEEecCCCCCCCcc--ccc
Q 048733 549 CSKTRRITIQRSID--DGALESIKDSKVRSVILFNVDKLPDSFVKSCIAN------FKLMKVLDLEDSPINYLPE--GVG 618 (887)
Q Consensus 549 ~~~~r~lsi~~~~~--~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~------~~~Lr~L~L~~~~l~~lp~--~i~ 618 (887)
...+++|.+..+.. ..+.....+++|+.|.+.++..+....++..+.+ +++|++|+|++|.+..+|. .++
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~ 327 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc
Confidence 45788999987643 2333455788999999998863222123444444 4899999999999999998 899
Q ss_pred cccccceeecCCCc---------------eeeecCccccccchhhhcccc-cCeeeecccccccccccchhhhhhccCCc
Q 048733 619 NLFNLHLLNARNTK---------------ILDLAHTFVSELPEEIRNLKK-LRSLIVFHYKYITGSIIPTEAAAKIHRGF 682 (887)
Q Consensus 619 ~L~~L~~L~L~~~~---------------~Ldl~~~~l~~lp~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~p~~i 682 (887)
++++|++|++++|. +|++++|.+..+|..+.++++ |++|++++| ....+|..+
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N-----------~l~~lp~~~ 396 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-----------KLKYIPNIF 396 (636)
T ss_dssp TCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS-----------CCSSCCSCC
T ss_pred cCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC-----------cCcccchhh
Confidence 99999999999886 788899988899999999999 999999998 455778777
Q ss_pred cccc--cccccccccccCceecchHHHHHhh-------ccccccceeEEeccCChhHHHH-HHhcccCCcEEEEeecCCc
Q 048733 683 GSLR--GLQSLRGLLALPTIEADSQVLKELM-------MLRQLNMLSIRRQNGNGRDLCA-LIANLENVETLGVLMKSKE 752 (887)
Q Consensus 683 ~~L~--~L~~L~~~~~l~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~ 752 (887)
+.++ +|+.|+ ++.+.+....+..+. .+++|+.|+++++... .++. .+..+++|+.|++++|...
T Consensus 397 ~~~~l~~L~~L~----Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 397 DAKSVSVMSAID----FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS--KFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CTTCSSCEEEEE----CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC--SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred hhcccCccCEEE----CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC--cCCHHHHccCCCCCEEECCCCCCC
Confidence 7654 899998 777777766666666 7789999999875433 2343 3456899999999998765
Q ss_pred cccccCccccc------ccccceeEEeecc-CCCChhhh--cCCCcceeEEEecccCCcC--cCcCcccceeeeCc----
Q 048733 753 EILDLQSLSSP------PQHLQYLSLRGNM-KKLPDWIL--KLKNLIGSRLILSGLTEDP--ISWFPKLRKLVLLN---- 817 (887)
Q Consensus 753 ~~~~l~~l~~~------~~~L~~L~L~~~~-~~lp~~~~--~l~~L~~L~L~~~~l~~~~--~~~~~~L~~L~l~~---- 817 (887)
.. +...+... .++|+.|+|++|. ..+|..+. .+++|+.|+|++|.+...| +..+++|+.|++.+
T Consensus 471 ~i-~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 471 EI-PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp BC-CSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCT
T ss_pred Cc-CHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCccc
Confidence 32 21111111 1289999999874 68998887 8999999999999998753 34788999999964
Q ss_pred --CCCceeEEEcCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 818 --FEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 818 --~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
+.....+|..++.+++|+.|++++|.. +.+|..+. ++|+.|++++||
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred ccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 333456677788899999999999985 88998765 899999999997
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=2.4e-20 Score=203.27 Aligned_cols=266 Identities=17% Similarity=0.190 Sum_probs=204.3
Q ss_pred CCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCc--------------ee
Q 048733 569 IKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTK--------------IL 634 (887)
Q Consensus 569 ~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~--------------~L 634 (887)
..++++++|.+.++.... + ..+..+++|++|++++|.+..+|. +..+++|++|++++|. +|
T Consensus 41 ~~l~~L~~L~l~~~~i~~---~-~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L 115 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS---I-QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLREL 115 (347)
T ss_dssp HHHTTCSEEECCSSCCCC---C-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred hhcccccEEEEeCCcccc---c-hhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEE
Confidence 357889999999876522 2 237889999999999999998887 9999999999999886 78
Q ss_pred eecCccccccchhhhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccc
Q 048733 635 DLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLR 714 (887)
Q Consensus 635 dl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~ 714 (887)
++++|.+..+|. +.++++|++|++++|. ....+..++.+++|++|. ++.+....... +..++
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~-----------~~~~~~~~~~l~~L~~L~----l~~~~~~~~~~--~~~l~ 177 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANH-----------NLSDLSPLSNMTGLNYLT----VTESKVKDVTP--IANLT 177 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCT-----------TCCCCGGGTTCTTCCEEE----CCSSCCCCCGG--GGGCT
T ss_pred ECcCCcccCchh-hccCCceeEEECCCCC-----------CcccccchhhCCCCcEEE----ecCCCcCCchh--hccCC
Confidence 888888877776 7788888888888772 222233477888888887 55555433222 78888
Q ss_pred cccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeE
Q 048733 715 QLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSR 793 (887)
Q Consensus 715 ~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~ 793 (887)
+|+.|+++++.... ++. +..+++|+.|++.+|....... +...+ +|+.|++++|. ..+|. +..+++|+.|+
T Consensus 178 ~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~~~-~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 249 (347)
T 4fmz_A 178 DLYSLSLNYNQIED--ISP-LASLTSLHYFTAYVNQITDITP---VANMT-RLNSLKIGNNKITDLSP-LANLSQLTWLE 249 (347)
T ss_dssp TCSEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG---GGGCT-TCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred CCCEEEccCCcccc--ccc-ccCCCccceeecccCCCCCCch---hhcCC-cCCEEEccCCccCCCcc-hhcCCCCCEEE
Confidence 99999888643322 112 6788899999998876544322 33344 99999999874 56664 78899999999
Q ss_pred EEecccCCcC-cCcCcccceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 794 LILSGLTEDP-ISWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 794 L~~~~l~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
|++|.+...+ +..+++|++|++.+|. +..++ ....+++|+.|++++|......|..+..+++|++|++++|+
T Consensus 250 l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 250 IGTNQISDINAVKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred CCCCccCCChhHhcCCCcCEEEccCCc-cCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 9999987753 5688999999999874 55553 46779999999999998666677788999999999999997
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=4.1e-21 Score=231.70 Aligned_cols=309 Identities=19% Similarity=0.176 Sum_probs=202.0
Q ss_pred CCceEEEEecCCCc--cccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCC-CCcccccccc-ccce
Q 048733 550 SKTRRITIQRSIDD--GALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPIN-YLPEGVGNLF-NLHL 625 (887)
Q Consensus 550 ~~~r~lsi~~~~~~--~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~L~-~L~~ 625 (887)
..++++.+..+... .+.....+++|++|.+.++... ..+....+.++++|++|+|++|.+. .+|..++++. +|++
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS-GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE-EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc-CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence 55777777655432 2223345777888877776541 1222344778888888888888877 7788888777 7888
Q ss_pred eecCCCc------------------eeeecCcccc-ccchhhhcccccCeeeecccccccccccch--------------
Q 048733 626 LNARNTK------------------ILDLAHTFVS-ELPEEIRNLKKLRSLIVFHYKYITGSIIPT-------------- 672 (887)
Q Consensus 626 L~L~~~~------------------~Ldl~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~-------------- 672 (887)
|++++|. +|++++|.+. .+|..+.++++|++|++++|. +++..+..
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCS
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc-ccCcccHHHhcCCCCCEEECCC
Confidence 8877664 6677777665 677777888888888888762 22221110
Q ss_pred hh-hhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCC
Q 048733 673 EA-AAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSK 751 (887)
Q Consensus 673 ~~-~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 751 (887)
.. ...+|..++.+++|++|+ ++.+.+.+..+..+..+++|+.|+++++... ..++..+.++++|+.|++++|..
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~----L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLI----LDFNDLTGEIPSGLSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEE----CCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCC
T ss_pred CcccCcCCHHHcCCCCceEEE----ecCCcccCcCCHHHhcCCCCCEEEccCCccC-CcCChHHhcCCCCCEEECCCCcc
Confidence 00 113444555666666665 5555555555555666777777776653322 22445566677777777776655
Q ss_pred ccccccCcccccccccceeEEeecc--CCCChhhh---------------------------------------------
Q 048733 752 EEILDLQSLSSPPQHLQYLSLRGNM--KKLPDWIL--------------------------------------------- 784 (887)
Q Consensus 752 ~~~~~l~~l~~~~~~L~~L~L~~~~--~~lp~~~~--------------------------------------------- 784 (887)
.+..+ ..+...+ +|+.|++++|. +.+|.++.
T Consensus 527 ~~~~p-~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (768)
T 3rgz_A 527 SGNIP-AELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604 (768)
T ss_dssp EEECC-GGGGGCT-TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred cCcCC-HHHcCCC-CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence 43322 2333333 78888887653 34554332
Q ss_pred -------------------------cCCCcceeEEEecccCCcC---cCcCcccceeeeCcCCCceeEEEcCCCccCccE
Q 048733 785 -------------------------KLKNLIGSRLILSGLTEDP---ISWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRE 836 (887)
Q Consensus 785 -------------------------~l~~L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~ 836 (887)
.+++|+.|+|++|.+.+.. +..+++|+.|+++++.-...+|..++.+++|+.
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence 2456777888888776543 336778888888887755677888888999999
Q ss_pred EEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 837 LWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 837 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
|++++|...+.+|..+.++++|+.|++++|+
T Consensus 685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 9999998777899999999999999999885
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=8.7e-21 Score=226.96 Aligned_cols=266 Identities=12% Similarity=0.133 Sum_probs=152.6
Q ss_pred CCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCC-CCC--Ccccccccc-------ccceeecCCCceeeecCc
Q 048733 570 KDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSP-INY--LPEGVGNLF-------NLHLLNARNTKILDLAHT 639 (887)
Q Consensus 570 ~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~~--lp~~i~~L~-------~L~~L~L~~~~~Ldl~~~ 639 (887)
.+++|+.|.+.++.. ...++..|.++++|++|+|++|. ++. +|..++++. +|++|+|+ +|
T Consensus 489 ~L~~L~~L~Ls~N~l--~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls--------~N 558 (876)
T 4ecn_A 489 NLKDLTDVELYNCPN--MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG--------YN 558 (876)
T ss_dssp GCTTCCEEEEESCTT--CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC--------SS
T ss_pred cCCCCCEEECcCCCC--CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee--------CC
Confidence 345555555554433 12233444555555555555554 442 454444444 45544444 45
Q ss_pred cccccch--hhhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhcccc-c
Q 048733 640 FVSELPE--EIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQ-L 716 (887)
Q Consensus 640 ~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~-L 716 (887)
.+..+|. .+.++++|++|++++| ....+| .++++++|+.|. ++.+.+. ..+..+..+++ |
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N-----------~l~~lp-~~~~L~~L~~L~----Ls~N~l~-~lp~~l~~l~~~L 621 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHN-----------KVRHLE-AFGTNVKLTDLK----LDYNQIE-EIPEDFCAFTDQV 621 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTS-----------CCCBCC-CCCTTSEESEEE----CCSSCCS-CCCTTSCEECTTC
T ss_pred cCCccCChhhhhcCCCCCEEECCCC-----------Ccccch-hhcCCCcceEEE----CcCCccc-cchHHHhhccccC
Confidence 5778887 7888888888888877 334666 677788888877 6666655 44555777777 8
Q ss_pred cceeEEeccCChhHHHHHHhccc--CCcEEEEeecCCccccc-cC-ccc--ccccccceeEEeecc-CCCChhhh-cCCC
Q 048733 717 NMLSIRRQNGNGRDLCALIANLE--NVETLGVLMKSKEEILD-LQ-SLS--SPPQHLQYLSLRGNM-KKLPDWIL-KLKN 788 (887)
Q Consensus 717 ~~L~l~~~~~~~~~l~~~l~~~~--~L~~L~l~~~~~~~~~~-l~-~l~--~~~~~L~~L~L~~~~-~~lp~~~~-~l~~ 788 (887)
+.|+++++... .++..+..++ +|+.|++++|...+..+ +. .+. ..+ +|+.|+|++|. ..+|.++. .+++
T Consensus 622 ~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~-~L~~L~Ls~N~L~~lp~~~~~~l~~ 698 (876)
T 4ecn_A 622 EGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI-NASTVTLSYNEIQKFPTELFATGSP 698 (876)
T ss_dssp CEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC-CEEEEECCSSCCCSCCHHHHHTTCC
T ss_pred CEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC-CcCEEEccCCcCCccCHHHHccCCC
Confidence 88888764332 3344444443 37777777765543211 10 010 112 67777776653 55666554 5667
Q ss_pred cceeEEEecccCCcCcCcC----------cccceeeeCcCCCceeEEEcCC--CccCccEEEEccCCCCCccccccccCC
Q 048733 789 LIGSRLILSGLTEDPISWF----------PKLRKLVLLNFEAVKSVIIEKG--AMPDIRELWIGPCPLLMEIPIGIDHLR 856 (887)
Q Consensus 789 L~~L~L~~~~l~~~~~~~~----------~~L~~L~l~~~~~l~~~~~~~~--~lp~L~~L~l~~c~~l~~lp~~~~~l~ 856 (887)
|+.|+|++|.+...+...| ++|+.|++.+|. +..+|.... .+|+|+.|+|++|. +..+|..+.+++
T Consensus 699 L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~ 776 (876)
T 4ecn_A 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSS 776 (876)
T ss_dssp CSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCT
T ss_pred CCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCC
Confidence 7777777776664443322 266666666653 445555554 56666666666665 344666666666
Q ss_pred CCCEEEEEech
Q 048733 857 NLELLTFHDMS 867 (887)
Q Consensus 857 ~L~~L~l~~c~ 867 (887)
+|+.|++++|+
T Consensus 777 ~L~~L~Ls~N~ 787 (876)
T 4ecn_A 777 QLKAFGIRHQR 787 (876)
T ss_dssp TCCEEECCCCB
T ss_pred CCCEEECCCCC
Confidence 66666665543
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=2.7e-20 Score=206.33 Aligned_cols=279 Identities=18% Similarity=0.160 Sum_probs=152.8
Q ss_pred CCceEEEEecCCCccccc--cCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCc-ccccccccccee
Q 048733 550 SKTRRITIQRSIDDGALE--SIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLP-EGVGNLFNLHLL 626 (887)
Q Consensus 550 ~~~r~lsi~~~~~~~~~~--~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L 626 (887)
.+++++.+.++....... ...+++|+.|.+.++.. ....+..|.++++|++|+|++|.+..+| ..++++++|++|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 467777777654432212 23567788888777654 2344456777888888888888877664 446778888877
Q ss_pred ecCCCceeeecCccccccchhh-hcccccCeeeecccccccccccchhhhhhc-cCCccccccccccccccccCceecch
Q 048733 627 NARNTKILDLAHTFVSELPEEI-RNLKKLRSLIVFHYKYITGSIIPTEAAAKI-HRGFGSLRGLQSLRGLLALPTIEADS 704 (887)
Q Consensus 627 ~L~~~~~Ldl~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-p~~i~~L~~L~~L~~~~~l~~~~~~~ 704 (887)
++++| .+..+|..+ .++++|++|++++| ....+ |..++.+++|++|. ++.+.+..
T Consensus 123 ~L~~n--------~l~~l~~~~~~~l~~L~~L~L~~n-----------~l~~~~~~~~~~l~~L~~L~----l~~n~l~~ 179 (390)
T 3o6n_A 123 VLERN--------DLSSLPRGIFHNTPKLTTLSMSNN-----------NLERIEDDTFQATTSLQNLQ----LSSNRLTH 179 (390)
T ss_dssp ECCSS--------CCCCCCTTTTTTCTTCCEEECCSS-----------CCCBCCTTTTSSCTTCCEEE----CCSSCCSB
T ss_pred ECCCC--------ccCcCCHHHhcCCCCCcEEECCCC-----------ccCccChhhccCCCCCCEEE----CCCCcCCc
Confidence 77765 477888764 68888888888887 33333 33477888888887 55655543
Q ss_pred HHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccc------------------cCcccccccc
Q 048733 705 QVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILD------------------LQSLSSPPQH 766 (887)
Q Consensus 705 ~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~------------------l~~l~~~~~~ 766 (887)
. .+..+++|+.|+++.+.... +...++|+.|++++|....... ...+...+ +
T Consensus 180 ~---~~~~l~~L~~L~l~~n~l~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~-~ 249 (390)
T 3o6n_A 180 V---DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP-G 249 (390)
T ss_dssp C---CGGGCTTCSEEECCSSCCSE------EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCT-T
T ss_pred c---ccccccccceeecccccccc------cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCC-C
Confidence 3 24566777777666532211 1122345555555443322110 01122222 4
Q ss_pred cceeEEeecc-C-CCChhhhcCCCcceeEEEecccCCcCc--CcCcccceeeeCcCCCceeEEEcCCCccCccEEEEccC
Q 048733 767 LQYLSLRGNM-K-KLPDWILKLKNLIGSRLILSGLTEDPI--SWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPC 842 (887)
Q Consensus 767 L~~L~L~~~~-~-~lp~~~~~l~~L~~L~L~~~~l~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c 842 (887)
|+.|++++|. . ..|..+..+++|+.|+|++|.+...+. ..+++|+.|++.++. +..++...+.+++|+.|++++|
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSS
T ss_pred ccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCC
Confidence 4444444432 1 224444444555555555544443221 134455555555442 3333333344455555555555
Q ss_pred CCCCccccccccCCCCCEEEEEech
Q 048733 843 PLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 843 ~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
+ +..+| +..+++|++|++++||
T Consensus 329 ~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 329 S-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp C-CCCCC--CCTTCCCSEEECCSSC
T ss_pred c-cceeC--chhhccCCEEEcCCCC
Confidence 4 33333 3455566666666555
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=1.1e-20 Score=222.59 Aligned_cols=285 Identities=14% Similarity=0.142 Sum_probs=175.3
Q ss_pred CCCCceEEEEecCCCcc-------------------ccccC--CCCceeEEEeecCCCCCccccccccCCCceeEEEEec
Q 048733 548 HCSKTRRITIQRSIDDG-------------------ALESI--KDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLE 606 (887)
Q Consensus 548 ~~~~~r~lsi~~~~~~~-------------------~~~~~--~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~ 606 (887)
...++++|.+..+.... +.... .+++|+.|.+.++.. ...++..+.++++|++|+|+
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN--LTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT--CSSCCTTTTTCSSCCEEECT
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC--CccChHHHhcCCCCCEEECc
Confidence 34567888888665432 32333 578888888888765 23455778888888889998
Q ss_pred CCC-CCC--Cccccccc------cccceeecCCCceeeecCccccccch--hhhcccccCeeeecccccccccccchhhh
Q 048733 607 DSP-INY--LPEGVGNL------FNLHLLNARNTKILDLAHTFVSELPE--EIRNLKKLRSLIVFHYKYITGSIIPTEAA 675 (887)
Q Consensus 607 ~~~-l~~--lp~~i~~L------~~L~~L~L~~~~~Ldl~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 675 (887)
+|. ++. +|..++.+ ++|++|++++| .+..+|. .+.++++|++|++++| ..
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n--------~l~~ip~~~~l~~l~~L~~L~L~~N-----------~l 342 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN--------NLKTFPVETSLQKMKKLGMLECLYN-----------QL 342 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS--------CCSSCCCHHHHTTCTTCCEEECCSC-----------CC
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCC--------cCCccCchhhhccCCCCCEEeCcCC-----------cC
Confidence 887 774 88888877 88888887765 4667777 7778888888888776 23
Q ss_pred h-hccCCccccccccccccccccCceecchHHHHHhhcccc-ccceeEEeccCChhHHHHHHhccc--CCcEEEEeecCC
Q 048733 676 A-KIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQ-LNMLSIRRQNGNGRDLCALIANLE--NVETLGVLMKSK 751 (887)
Q Consensus 676 ~-~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~l~~~l~~~~--~L~~L~l~~~~~ 751 (887)
. .+| .++.+++|++|. ++.+.+. ..+..+..+++ |+.|+++++... .++..+..++ +|+.|++++|..
T Consensus 343 ~g~ip-~~~~l~~L~~L~----L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLN----LAYNQIT-EIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp EEECC-CCEEEEEESEEE----CCSSEEE-ECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred ccchh-hhCCCCCCCEEE----CCCCccc-cccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCcC
Confidence 3 555 667777777776 5555554 33444667777 777777654322 2343343333 677777776654
Q ss_pred ccccccCccc-------ccccccceeEEeecc-CCCChhhh-cCCCcceeEEEecccCCcCcCcCc----------ccce
Q 048733 752 EEILDLQSLS-------SPPQHLQYLSLRGNM-KKLPDWIL-KLKNLIGSRLILSGLTEDPISWFP----------KLRK 812 (887)
Q Consensus 752 ~~~~~l~~l~-------~~~~~L~~L~L~~~~-~~lp~~~~-~l~~L~~L~L~~~~l~~~~~~~~~----------~L~~ 812 (887)
.+..+ ..+. ..+ +|+.|+|++|. ..+|..+. .+++|+.|+|++|.+...+...|. +|+.
T Consensus 415 ~~~~p-~~l~~~~~~~~~~~-~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 415 GSVDG-KNFDPLDPTPFKGI-NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492 (636)
T ss_dssp TTTTT-CSSCTTCSSCCCCC-CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCE
T ss_pred CCcch-hhhcccccccccCC-CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccE
Confidence 43211 1111 222 66666666653 45555433 366666666666666644443332 6666
Q ss_pred eeeCcCCCceeEEEcCC--CccCccEEEEccCCCCCccccccccCCCCCEEEEEe
Q 048733 813 LVLLNFEAVKSVIIEKG--AMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHD 865 (887)
Q Consensus 813 L~l~~~~~l~~~~~~~~--~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 865 (887)
|++.++. +..+|.... .+++|+.|++++|. +..+|..+.++++|++|++++
T Consensus 493 L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 493 IDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp EECCSSC-CCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCS
T ss_pred EECcCCc-CCccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCC
Confidence 6666653 335554444 56666666666665 333666666666666666644
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.2e-20 Score=203.00 Aligned_cols=230 Identities=15% Similarity=0.164 Sum_probs=149.3
Q ss_pred CCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhh
Q 048733 570 KDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIR 649 (887)
Q Consensus 570 ~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~ 649 (887)
...+++.|.+.++... .++..+.++++|++|+|++|.+..+|..++++++|++|+|++| .+..+|..+.
T Consensus 79 ~~~~l~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n--------~l~~lp~~l~ 147 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP---QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN--------PLRALPASIA 147 (328)
T ss_dssp TSTTCCEEEEESSCCS---SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC--------CCCCCCGGGG
T ss_pred cccceeEEEccCCCch---hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC--------ccccCcHHHh
Confidence 3566777777766541 2334455577777777777777777777777777777766654 3556777777
Q ss_pred cccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChh
Q 048733 650 NLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGR 729 (887)
Q Consensus 650 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 729 (887)
++++|++|++++|+ ....+|..++... +
T Consensus 148 ~l~~L~~L~L~~n~----------~~~~~p~~~~~~~----------------------------------~-------- 175 (328)
T 4fcg_A 148 SLNRLRELSIRACP----------ELTELPEPLASTD----------------------------------A-------- 175 (328)
T ss_dssp GCTTCCEEEEEEET----------TCCCCCSCSEEEC-------------------------------------------
T ss_pred cCcCCCEEECCCCC----------CccccChhHhhcc----------------------------------c--------
Confidence 77777777777762 2223333222100 0
Q ss_pred HHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcC---cC
Q 048733 730 DLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDP---IS 805 (887)
Q Consensus 730 ~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~---~~ 805 (887)
...+.++++|+.|++++|...... ..+...+ +|+.|+|++|. ..+|..+..+++|+.|+|++|.+.... +.
T Consensus 176 --~~~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~-~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~ 250 (328)
T 4fcg_A 176 --SGEHQGLVNLQSLRLEWTGIRSLP--ASIANLQ-NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250 (328)
T ss_dssp --CCCEEESTTCCEEEEEEECCCCCC--GGGGGCT-TCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred --hhhhccCCCCCEEECcCCCcCcch--HhhcCCC-CCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhc
Confidence 001223445555555554333110 1222223 66666666653 456666777777888888777665432 33
Q ss_pred cCcccceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 806 WFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 806 ~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
.+++|++|++.+|.....+|..++.+++|+.|+|++|+.++.+|..+.++++|+.+.+..+.
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 67788888888887777788778889999999999999999999999999999999877543
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=5.2e-20 Score=208.74 Aligned_cols=301 Identities=14% Similarity=0.127 Sum_probs=200.4
Q ss_pred CCCCceEEEEecCCCcc--ccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCC-ccccccccccc
Q 048733 548 HCSKTRRITIQRSIDDG--ALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYL-PEGVGNLFNLH 624 (887)
Q Consensus 548 ~~~~~r~lsi~~~~~~~--~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~L~ 624 (887)
.+..+++|.+..+.... +.....+++|+.|.+.++... ..+.+..|.++++|++|+|++|.+..+ |..++++++|+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCccc-ceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 34678999999776533 223557899999999988652 234457789999999999999999865 78899999999
Q ss_pred eeecCCCc------------------eeeecCcccccc-chh-hhcccccCeeeecccccccccccchhhhhhccCCccc
Q 048733 625 LLNARNTK------------------ILDLAHTFVSEL-PEE-IRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGS 684 (887)
Q Consensus 625 ~L~L~~~~------------------~Ldl~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~ 684 (887)
+|++++|. +|++++|.+..+ |.. +.++++|++|++++|. +++. .|..++.
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~---------~~~~l~~ 176 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSI---------CEEDLLN 176 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCC---------CTTTSGG
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-cccc---------Chhhhhc
Confidence 99999876 777888877766 444 6678888888888762 2211 1222222
Q ss_pred ----------------------------------cccccccccccccCceecchHHHHHhhcc---ccccceeEEeccCC
Q 048733 685 ----------------------------------LRGLQSLRGLLALPTIEADSQVLKELMML---RQLNMLSIRRQNGN 727 (887)
Q Consensus 685 ----------------------------------L~~L~~L~~~~~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~ 727 (887)
+++|++|+ ++.+.+....+..+..+ ++|+.|.++.+...
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~----Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD----LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEE----CTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTT
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEe----cCCCcccccchhhhhccccccceeeEeecccccc
Confidence 23344444 33444433333333322 34444444321000
Q ss_pred hhH---------HHHHHh--cccCCcEEEEeecCCccccccCcccccccccceeEEeecc-C-CCChhhhcCCCcceeEE
Q 048733 728 GRD---------LCALIA--NLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-K-KLPDWILKLKNLIGSRL 794 (887)
Q Consensus 728 ~~~---------l~~~l~--~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~-~lp~~~~~l~~L~~L~L 794 (887)
... ....+. ..++|+.|++++|...+... ..+...+ +|+.|+|++|. . ..|..+..+++|+.|+|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 330 (455)
T 3v47_A 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK-SVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330 (455)
T ss_dssp SCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT-TTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccchhhhccCcccccccccccCceEEEecCccccccch-hhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEEC
Confidence 000 000011 12567777777765544321 2333344 89999998874 3 35667888999999999
Q ss_pred EecccCCcC---cCcCcccceeeeCcCCCceeE-EEcCCCccCccEEEEccCCCCCcccc-ccccCCCCCEEEEEech
Q 048733 795 ILSGLTEDP---ISWFPKLRKLVLLNFEAVKSV-IIEKGAMPDIRELWIGPCPLLMEIPI-GIDHLRNLELLTFHDMS 867 (887)
Q Consensus 795 ~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~-~~~~~~lp~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~ 867 (887)
++|.+...+ +..+++|++|++.++. +..+ +..++.+++|+.|++++|. ++.+|. .+..+++|++|++++||
T Consensus 331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 331 SQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CSSCCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCCcChhHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 999887654 3468899999999875 4444 5567889999999999987 556665 56899999999999988
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=2.3e-20 Score=223.32 Aligned_cols=299 Identities=13% Similarity=0.105 Sum_probs=224.7
Q ss_pred CCCceEEEEecCCC--ccccccCCCCceeEEEeecCCCCCccccccc-------cCCCceeEEEEecCCCCCCCcc--cc
Q 048733 549 CSKTRRITIQRSID--DGALESIKDSKVRSVILFNVDKLPDSFVKSC-------IANFKLMKVLDLEDSPINYLPE--GV 617 (887)
Q Consensus 549 ~~~~r~lsi~~~~~--~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~-------~~~~~~Lr~L~L~~~~l~~lp~--~i 617 (887)
..++++|.+..+.. ..+.....+++|+.|.+.++..+....++.. +..+++|++|+|++|.+..+|. .+
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l 569 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence 45789999987643 3343456789999999998863222023333 3455699999999999999998 89
Q ss_pred ccccccceeecCCCc--------------eeeecCccccccchhhhcccc-cCeeeecccccccccccchhhhhhccCCc
Q 048733 618 GNLFNLHLLNARNTK--------------ILDLAHTFVSELPEEIRNLKK-LRSLIVFHYKYITGSIIPTEAAAKIHRGF 682 (887)
Q Consensus 618 ~~L~~L~~L~L~~~~--------------~Ldl~~~~l~~lp~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~p~~i 682 (887)
+++++|++|+|++|. .|+|++|.+..+|..+.++++ |++|++++| ....+|..+
T Consensus 570 ~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N-----------~L~~lp~~~ 638 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-----------KLKYIPNIF 638 (876)
T ss_dssp TTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS-----------CCCSCCSCC
T ss_pred hcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC-----------CCCcCchhh
Confidence 999999999999885 788899988899988999998 999999987 344677777
Q ss_pred ccccc--ccccccccccCceecchHHH---HHhh--ccccccceeEEeccCChhHHHHHH-hcccCCcEEEEeecCCccc
Q 048733 683 GSLRG--LQSLRGLLALPTIEADSQVL---KELM--MLRQLNMLSIRRQNGNGRDLCALI-ANLENVETLGVLMKSKEEI 754 (887)
Q Consensus 683 ~~L~~--L~~L~~~~~l~~~~~~~~~~---~~l~--~l~~L~~L~l~~~~~~~~~l~~~l-~~~~~L~~L~l~~~~~~~~ 754 (887)
+.++. |+.|. ++.+.+.+..+ ..+. .+++|+.|+++++... .++..+ ..+++|+.|++++|.....
T Consensus 639 ~~~~~~~L~~L~----Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~--~lp~~~~~~l~~L~~L~Ls~N~L~~i 712 (876)
T 4ecn_A 639 NAKSVYVMGSVD----FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ--KFPTELFATGSPISTIILSNNLMTSI 712 (876)
T ss_dssp CTTCSSCEEEEE----CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC--SCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred hccccCCCCEEE----CcCCcCCCccccchhhhccccCCCcCEEEccCCcCC--ccCHHHHccCCCCCEEECCCCcCCcc
Confidence 66654 88888 66666644321 1222 3458889999875433 344444 4789999999998866532
Q ss_pred cccCcccc------cccccceeEEeec-cCCCChhhh--cCCCcceeEEEecccCCcC--cCcCcccceeeeCcC-----
Q 048733 755 LDLQSLSS------PPQHLQYLSLRGN-MKKLPDWIL--KLKNLIGSRLILSGLTEDP--ISWFPKLRKLVLLNF----- 818 (887)
Q Consensus 755 ~~l~~l~~------~~~~L~~L~L~~~-~~~lp~~~~--~l~~L~~L~L~~~~l~~~~--~~~~~~L~~L~l~~~----- 818 (887)
.. ..... ..++|+.|+|++| +..+|..+. .+++|+.|+|++|.+...| +..+++|+.|++.++
T Consensus 713 p~-~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 713 PE-NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp CT-TSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTC
T ss_pred Ch-HHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccc
Confidence 21 11111 1128999999987 468998887 8999999999999998754 447899999999773
Q ss_pred -CCceeEEEcCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEechh
Q 048733 819 -EAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMSK 868 (887)
Q Consensus 819 -~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 868 (887)
.....+|..++.+++|+.|+|++|.. +.+|..+. ++|+.|+|++||.
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred ccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 33446677788899999999999985 89998765 7999999999983
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=3.1e-20 Score=217.45 Aligned_cols=276 Identities=19% Similarity=0.186 Sum_probs=153.7
Q ss_pred CCceEEEEecCCCccccc--cCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCcc-cccccccccee
Q 048733 550 SKTRRITIQRSIDDGALE--SIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPE-GVGNLFNLHLL 626 (887)
Q Consensus 550 ~~~r~lsi~~~~~~~~~~--~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L 626 (887)
.+.+.+.+.++.....+. ...+++|++|.+.++.. ..+.+..|..+++|++|+|++|.+..+|. .++++++|++|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 345666666543322211 23466777777776654 23444566777777777777777776653 45777777777
Q ss_pred ecCCCceeeecCccccccchhh-hcccccCeeeecccccccccccchhhhhhc-cCCccccccccccccccccCceecch
Q 048733 627 NARNTKILDLAHTFVSELPEEI-RNLKKLRSLIVFHYKYITGSIIPTEAAAKI-HRGFGSLRGLQSLRGLLALPTIEADS 704 (887)
Q Consensus 627 ~L~~~~~Ldl~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-p~~i~~L~~L~~L~~~~~l~~~~~~~ 704 (887)
+|++| .+..+|..+ .++++|++|++++| ....+ |..++.+++|++|. ++.+.+..
T Consensus 129 ~L~~n--------~l~~l~~~~~~~l~~L~~L~Ls~N-----------~l~~~~~~~~~~l~~L~~L~----L~~N~l~~ 185 (597)
T 3oja_B 129 VLERN--------DLSSLPRGIFHNTPKLTTLSMSNN-----------NLERIEDDTFQATTSLQNLQ----LSSNRLTH 185 (597)
T ss_dssp ECCSS--------CCCCCCTTTTTTCTTCCEEECCSS-----------CCCBCCTTTTTTCTTCCEEE----CTTSCCSB
T ss_pred EeeCC--------CCCCCCHHHhccCCCCCEEEeeCC-----------cCCCCChhhhhcCCcCcEEE----CcCCCCCC
Confidence 77654 577777764 68888888888887 23333 34578888888887 66665543
Q ss_pred HHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeeccCCCChhhh
Q 048733 705 QVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNMKKLPDWIL 784 (887)
Q Consensus 705 ~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~~~~ 784 (887)
. .++.+++|+.|+++++.... +....+|+.|++++|....... . .+.+|+.|+|++|.-.-+.++.
T Consensus 186 ~---~~~~l~~L~~L~l~~n~l~~------l~~~~~L~~L~ls~n~l~~~~~---~--~~~~L~~L~L~~n~l~~~~~l~ 251 (597)
T 3oja_B 186 V---DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINVVRG---P--VNVELTILKLQHNNLTDTAWLL 251 (597)
T ss_dssp C---CGGGCTTCSEEECCSSCCSE------EECCTTCSEEECCSSCCCEEEC---S--CCSCCCEEECCSSCCCCCGGGG
T ss_pred c---ChhhhhhhhhhhcccCcccc------ccCCchhheeeccCCccccccc---c--cCCCCCEEECCCCCCCCChhhc
Confidence 3 25566777777776532221 1233456666666554332211 0 1125555665554322234555
Q ss_pred cCCCcceeEEEecccCCcC---cCcCcccceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCCccccccccCCCCCEE
Q 048733 785 KLKNLIGSRLILSGLTEDP---ISWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELL 861 (887)
Q Consensus 785 ~l~~L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 861 (887)
.+++|+.|+|++|.+...+ +..+++|+.|++.++. +..++...+.+|+|+.|+|++|. +..+|..+..+++|+.|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENL 329 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEE
Confidence 5555666666555554432 2244555555555542 44444444445555555555554 33444444444444444
Q ss_pred EEEec
Q 048733 862 TFHDM 866 (887)
Q Consensus 862 ~l~~c 866 (887)
++++|
T Consensus 330 ~L~~N 334 (597)
T 3oja_B 330 YLDHN 334 (597)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 44443
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=2.5e-19 Score=211.11 Aligned_cols=304 Identities=19% Similarity=0.124 Sum_probs=193.8
Q ss_pred CCCCceEEEEecCCCcccc--ccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCC-ccccccccccc
Q 048733 548 HCSKTRRITIQRSIDDGAL--ESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYL-PEGVGNLFNLH 624 (887)
Q Consensus 548 ~~~~~r~lsi~~~~~~~~~--~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~L~ 624 (887)
.+..++++.+.++...... ....+++|++|.+.++.. ..+.+..|.++++|++|+|++|.+..+ |..++++++|+
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc--cccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCC
Confidence 4467899999877654322 345789999999998865 345567789999999999999999977 78899999999
Q ss_pred eeecCCCc----------------eeeecCcccc--ccchhhhcccccCeeeecccccccccccc---------------
Q 048733 625 LLNARNTK----------------ILDLAHTFVS--ELPEEIRNLKKLRSLIVFHYKYITGSIIP--------------- 671 (887)
Q Consensus 625 ~L~L~~~~----------------~Ldl~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~--------------- 671 (887)
+|++++|. +|++++|.+. .+|..+.++++|++|++++|. +++..+.
T Consensus 108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEE
T ss_pred EEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhcccccccee
Confidence 99999886 7888888877 478889999999999998872 2211100
Q ss_pred ---hhhhhhccCCccccccccccccccccCceecc-hHHHHHhhccccccceeEEecc----------------------
Q 048733 672 ---TEAAAKIHRGFGSLRGLQSLRGLLALPTIEAD-SQVLKELMMLRQLNMLSIRRQN---------------------- 725 (887)
Q Consensus 672 ---~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~---------------------- 725 (887)
......+|.......+|+.|+ ++.+... ...+..+.++++|+.+.+..+.
T Consensus 187 ~l~~n~l~~~~~~~~~~~~L~~L~----L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 187 DMSLNPIDFIQDQAFQGIKLHELT----LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEE----EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred eccCCCcceeCcccccCceeeeee----ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence 001112222222222444444 3333332 2334445555555544442200
Q ss_pred ----------CChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEE
Q 048733 726 ----------GNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRL 794 (887)
Q Consensus 726 ----------~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L 794 (887)
......+. +..+++|+.|++.++.... ++.+...+ +|+.|+++++. +.+|.+ .+++|+.|++
T Consensus 263 l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~---l~~l~~~~-~L~~L~l~~n~l~~lp~~--~l~~L~~L~l 335 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY---LEDVPKHF-KWQSLSIIRCQLKQFPTL--DLPFLKSLTL 335 (606)
T ss_dssp EEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC---CCCCCTTC-CCSEEEEESCCCSSCCCC--CCSSCCEEEE
T ss_pred Hhheeccccccccccccc-cccCCCCCEEEecCccchh---hhhccccc-cCCEEEcccccCcccccC--CCCccceeec
Confidence 00011111 4445566666666554322 12333333 67777777653 566643 6777777777
Q ss_pred Eecc-cCCcCcCcCcccceeeeCcCCCceeE---EEcCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 795 ILSG-LTEDPISWFPKLRKLVLLNFEAVKSV---IIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 795 ~~~~-l~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
++|. +...+...+++|++|++.++. +..+ +.....+++|+.|++++|. +..+|..+.++++|++|++++|.
T Consensus 336 ~~n~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 336 TMNKGSISFKKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp ESCSSCEECCCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSE
T ss_pred cCCcCccchhhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCc
Confidence 7773 333345567788888887764 3333 3445678888888888887 66677888888899999888875
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=2.6e-19 Score=203.21 Aligned_cols=282 Identities=22% Similarity=0.267 Sum_probs=161.7
Q ss_pred CCceEEEEecCCCccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecC
Q 048733 550 SKTRRITIQRSIDDGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNAR 629 (887)
Q Consensus 550 ~~~r~lsi~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 629 (887)
..+++|.+..+..........+++|+.|.+.++... ... . +.++++|++|+|++|.+..+|. +.++++|++|+++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~--~~~-~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA--DIT-P-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELS 142 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC--CCG-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEE
T ss_pred cCCCEEECCCCccCCchhhhccccCCEEECCCCccc--cCh-h-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECC
Confidence 445555555443322222344555555555554431 111 1 4555555555555555555443 5555555555554
Q ss_pred CCc-----------------------------------eeeecCccccccchhhhcccccCeeeecccccccccccchhh
Q 048733 630 NTK-----------------------------------ILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEA 674 (887)
Q Consensus 630 ~~~-----------------------------------~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 674 (887)
+|. +|++++|.+..++ .+.++++|++|++++| .
T Consensus 143 ~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n-----------~ 210 (466)
T 1o6v_A 143 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNN-----------Q 210 (466)
T ss_dssp EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-----------C
T ss_pred CCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCC-----------c
Confidence 432 3444444444433 2444444444444443 1
Q ss_pred hhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccc
Q 048733 675 AAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEI 754 (887)
Q Consensus 675 ~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 754 (887)
...++. ++.+++|++|. ++.+.+... ..+..+++|+.|+++++..... + .+..+++|+.|++++|.....
T Consensus 211 l~~~~~-~~~l~~L~~L~----l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~l~~n~l~~~ 280 (466)
T 1o6v_A 211 ISDITP-LGILTNLDELS----LNGNQLKDI--GTLASLTNLTDLDLANNQISNL--A-PLSGLTKLTELKLGANQISNI 280 (466)
T ss_dssp CCCCGG-GGGCTTCCEEE----CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G-GGTTCTTCSEEECCSSCCCCC
T ss_pred cccccc-ccccCCCCEEE----CCCCCcccc--hhhhcCCCCCEEECCCCccccc--h-hhhcCCCCCEEECCCCccCcc
Confidence 111221 45556666665 444443321 2456667777777765322221 1 156677777777777655443
Q ss_pred cccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCc-CcCcCcccceeeeCcCCCceeEEEcCCCcc
Q 048733 755 LDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTED-PISWFPKLRKLVLLNFEAVKSVIIEKGAMP 832 (887)
Q Consensus 755 ~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp 832 (887)
.. +...+ +|+.|++++|. ..++. +..+++|+.|+|++|.+... ++..+++|+.|++.+|. +..+ ..+..++
T Consensus 281 ~~---~~~l~-~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~-~~l~~l~ 353 (466)
T 1o6v_A 281 SP---LAGLT-ALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK-VSDV-SSLANLT 353 (466)
T ss_dssp GG---GTTCT-TCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC-CCCC-GGGTTCT
T ss_pred cc---ccCCC-ccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCc-cCCc-hhhccCC
Confidence 22 33333 78888888764 44443 67788888888888887664 35678888888888874 4444 3567789
Q ss_pred CccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 833 DIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 833 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
+|+.|++++|+.....| +..+++|+.|++++|+
T Consensus 354 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred CCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 99999999887544444 7889999999998886
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=4.6e-20 Score=214.81 Aligned_cols=100 Identities=23% Similarity=0.271 Sum_probs=70.3
Q ss_pred ccceeEEeecc-CC-CChh-hhcCCCcceeEEEecccCCcCcCcC-cccceeeeCcCCCceeEEEcCCCccCccEEEEcc
Q 048733 766 HLQYLSLRGNM-KK-LPDW-ILKLKNLIGSRLILSGLTEDPISWF-PKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGP 841 (887)
Q Consensus 766 ~L~~L~L~~~~-~~-lp~~-~~~l~~L~~L~L~~~~l~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~ 841 (887)
+|+.|++++|. .. +|.. +..+++|+.|+|++|.+....+..+ ++|+.|++.++ .++.+|.....+++|+.|++++
T Consensus 404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS
T ss_pred CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCC
Confidence 55555555542 22 4432 4445666666666666554444445 58888888877 4667777777899999999998
Q ss_pred CCCCCccccc-cccCCCCCEEEEEech
Q 048733 842 CPLLMEIPIG-IDHLRNLELLTFHDMS 867 (887)
Q Consensus 842 c~~l~~lp~~-~~~l~~L~~L~l~~c~ 867 (887)
|. ++.+|.. +..+++|+.|++++||
T Consensus 483 N~-l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 483 NQ-LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence 87 6688887 8899999999999987
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=3.5e-20 Score=218.38 Aligned_cols=275 Identities=21% Similarity=0.175 Sum_probs=167.9
Q ss_pred ceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCc----------------eeee
Q 048733 573 KVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTK----------------ILDL 636 (887)
Q Consensus 573 ~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~----------------~Ldl 636 (887)
+++.|.+.++.. ..+.+..|.++++|++|++++|.+..+|..++++++|++|++++|. +|++
T Consensus 255 ~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYF--FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCC--SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCcc--CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 455555555543 2233444556666666666666666666666666666666666553 3333
Q ss_pred cCcccc-ccchh-hhcccccCeeeecccccccccccchhhhhhc---cCCccccccccccccccccCceecchHHHHHhh
Q 048733 637 AHTFVS-ELPEE-IRNLKKLRSLIVFHYKYITGSIIPTEAAAKI---HRGFGSLRGLQSLRGLLALPTIEADSQVLKELM 711 (887)
Q Consensus 637 ~~~~l~-~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~---p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~ 711 (887)
++|.+. .+|.. +.++++|++|++++| ....+ |..++.+++|++|. ++.+.+....+..+.
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n-----------~l~~~~~~~~~~~~l~~L~~L~----l~~n~l~~~~~~~~~ 397 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHD-----------DIETSDCCNLQLRNLSHLQSLN----LSYNEPLSLKTEAFK 397 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSS-----------CCCEEEESTTTTTTCTTCCEEE----CCSCSCEEECTTTTT
T ss_pred CCCCcccccchhhhhccCcCCEEECCCC-----------ccccccCcchhcccCCCCCEEE----CCCCcCCcCCHHHhc
Confidence 344333 44443 566777777777765 22222 44567777777777 555555554555667
Q ss_pred ccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-C----CCChhhhcC
Q 048733 712 MLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-K----KLPDWILKL 786 (887)
Q Consensus 712 ~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~----~lp~~~~~l 786 (887)
.+++|+.|+++++.......+..+.++++|+.|++++|....... ..+...+ +|+.|++++|. . ..+.++..+
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE-QLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTL 475 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT-TTTTTCT-TCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH-HHHhCCC-CCCEEECCCCCCCccccccchhhccC
Confidence 777777777765322221112235667778888887765433221 2233334 78888887763 1 123457778
Q ss_pred CCcceeEEEecccCCcC---cCcCcccceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCCccccccccCCCCCEEEE
Q 048733 787 KNLIGSRLILSGLTEDP---ISWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTF 863 (887)
Q Consensus 787 ~~L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 863 (887)
++|+.|+|++|.+...+ +..+++|+.|++.++.-....+..+..+++| .|++++|......|..+..+++|+.|++
T Consensus 476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC
T ss_pred CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC
Confidence 88888888888776543 3466778888888775433334456677788 8888888755555666788888889988
Q ss_pred Eech
Q 048733 864 HDMS 867 (887)
Q Consensus 864 ~~c~ 867 (887)
++||
T Consensus 555 ~~N~ 558 (606)
T 3t6q_A 555 RQNP 558 (606)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 8887
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=5.2e-19 Score=200.76 Aligned_cols=284 Identities=17% Similarity=0.195 Sum_probs=163.2
Q ss_pred CCceEEEEecCCCccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecC
Q 048733 550 SKTRRITIQRSIDDGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNAR 629 (887)
Q Consensus 550 ~~~r~lsi~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 629 (887)
..++.+.+.+...........+++|+.|.+.++... ... . +.++++|++|++++|.+..++. ++++++|++|+++
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~--~~~-~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT--DIT-P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC--CCG-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccC--Cch-h-hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 467888888665543334556889999999988752 222 2 8899999999999999998877 9999999999999
Q ss_pred CCc--------------eeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhccCCcccccccccccccc
Q 048733 630 NTK--------------ILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLL 695 (887)
Q Consensus 630 ~~~--------------~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~ 695 (887)
+|. +|++++|.+..+|. +.++++|++|+++++ ...++ .++++++|+.|+
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~------------~~~~~-~~~~l~~L~~L~--- 183 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ------------VTDLK-PLANLTTLERLD--- 183 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEES------------CCCCG-GGTTCTTCCEEE---
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCc------------ccCch-hhccCCCCCEEE---
Confidence 875 56666666555542 555555555555421 01111 144445555554
Q ss_pred ccCceecchHHHHHhhccccccceeEEeccCChhHH-------------------HHHHhcccCCcEEEEeecCCccccc
Q 048733 696 ALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDL-------------------CALIANLENVETLGVLMKSKEEILD 756 (887)
Q Consensus 696 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l-------------------~~~l~~~~~L~~L~l~~~~~~~~~~ 756 (887)
++.+.+... ..+..+++|+.|+++++......- ...+..+++|+.|++++|...+...
T Consensus 184 -l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 184 -ISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 260 (466)
T ss_dssp -CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred -CcCCcCCCC--hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh
Confidence 333322211 123444444444444321111000 0123344445555554443322211
Q ss_pred cCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCc-CcCcCcccceeeeCcCCCceeEEEcCCCccCc
Q 048733 757 LQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTED-PISWFPKLRKLVLLNFEAVKSVIIEKGAMPDI 834 (887)
Q Consensus 757 l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L 834 (887)
+...+ +|+.|++++|. ..+|. +..+++|+.|+|++|.+... ++..+++|+.|++.+|. +..++. .+.+++|
T Consensus 261 ---~~~l~-~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L 333 (466)
T 1o6v_A 261 ---LSGLT-KLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDISP-VSSLTKL 333 (466)
T ss_dssp ---GTTCT-TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-CSCCGG-GGGCTTC
T ss_pred ---hhcCC-CCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc-CCCchh-hccCccC
Confidence 22222 56666666543 33333 55566666666666665543 24456667777776664 333322 4567777
Q ss_pred cEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 835 RELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 835 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
+.|++++|. +..++ .+.++++|+.|++++|+
T Consensus 334 ~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 334 QRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred CEeECCCCc-cCCch-hhccCCCCCEEeCCCCc
Confidence 777777775 44443 56777888888887775
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=3.7e-19 Score=207.00 Aligned_cols=301 Identities=16% Similarity=0.155 Sum_probs=197.5
Q ss_pred CCCceEEEEecCCCccc--cccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccc-cccccccce
Q 048733 549 CSKTRRITIQRSIDDGA--LESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEG-VGNLFNLHL 625 (887)
Q Consensus 549 ~~~~r~lsi~~~~~~~~--~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~ 625 (887)
+..++++.+..+..... .....+++|++|.+.++.. ....+..|.++++|++|+|++|.+..+|.. ++++++|++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc--CccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 35788998887655322 2346788999999988866 345557788999999999999999877655 899999999
Q ss_pred eecCCCc-----------------eeeecCcc-ccccc-hhhhcccccCeeeecccccccccccchhhhhhccCCccccc
Q 048733 626 LNARNTK-----------------ILDLAHTF-VSELP-EEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLR 686 (887)
Q Consensus 626 L~L~~~~-----------------~Ldl~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~ 686 (887)
|++++|. +|++++|. +..+| ..+.++++|++|++++|. .....|..++.++
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~----------l~~~~~~~l~~l~ 172 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS----------LRNYQSQSLKSIR 172 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT----------CCEECTTTTTTCS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc----------ccccChhhhhccc
Confidence 9998875 56666664 55555 356666677777766651 1123455667777
Q ss_pred cccccccccccCceecchHHHHHhhccccccceeEEeccCCh------------------------------hHHHHHHh
Q 048733 687 GLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNG------------------------------RDLCALIA 736 (887)
Q Consensus 687 ~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------------------------------~~l~~~l~ 736 (887)
+|++|. +..+.........+..+++|+.|+++++.... ..+...+.
T Consensus 173 ~L~~L~----l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 248 (549)
T 2z81_A 173 DIHHLT----LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248 (549)
T ss_dssp EEEEEE----EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGG
T ss_pred cCceEe----cccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhh
Confidence 777766 33333322222223456667777666532111 01222234
Q ss_pred cccCCcEEEEeecCCcccccc---------------------------------CcccccccccceeEEeecc-CCCChh
Q 048733 737 NLENVETLGVLMKSKEEILDL---------------------------------QSLSSPPQHLQYLSLRGNM-KKLPDW 782 (887)
Q Consensus 737 ~~~~L~~L~l~~~~~~~~~~l---------------------------------~~l~~~~~~L~~L~L~~~~-~~lp~~ 782 (887)
.+++|+.|.+.+|...+...+ ..+.....+|+.|+++++. ..+|.+
T Consensus 249 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~ 328 (549)
T 2z81_A 249 YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328 (549)
T ss_dssp GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHH
T ss_pred hhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHH
Confidence 455666666665532211000 0000112367888888763 678877
Q ss_pred h-hcCCCcceeEEEecccCCcC------cCcCcccceeeeCcCCCceeEE---EcCCCccCccEEEEccCCCCCcccccc
Q 048733 783 I-LKLKNLIGSRLILSGLTEDP------ISWFPKLRKLVLLNFEAVKSVI---IEKGAMPDIRELWIGPCPLLMEIPIGI 852 (887)
Q Consensus 783 ~-~~l~~L~~L~L~~~~l~~~~------~~~~~~L~~L~l~~~~~l~~~~---~~~~~lp~L~~L~l~~c~~l~~lp~~~ 852 (887)
+ ..+++|+.|+|++|.+.+.. +..+++|++|++.++. +..++ ..++.+++|+.|++++|. ++.+|..+
T Consensus 329 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~ 406 (549)
T 2z81_A 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSC 406 (549)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCC
T ss_pred HHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCC-CccCChhh
Confidence 7 46899999999999887532 4578899999998874 44443 236678999999999885 66888888
Q ss_pred ccCCCCCEEEEEech
Q 048733 853 DHLRNLELLTFHDMS 867 (887)
Q Consensus 853 ~~l~~L~~L~l~~c~ 867 (887)
..+++|++|++++|.
T Consensus 407 ~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 407 QWPEKMRFLNLSSTG 421 (549)
T ss_dssp CCCTTCCEEECTTSC
T ss_pred cccccccEEECCCCC
Confidence 888888888888876
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=1.4e-19 Score=200.54 Aligned_cols=270 Identities=13% Similarity=0.117 Sum_probs=181.2
Q ss_pred CCCceEEEEecCCCccc--cccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccc-cccccccce
Q 048733 549 CSKTRRITIQRSIDDGA--LESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEG-VGNLFNLHL 625 (887)
Q Consensus 549 ~~~~r~lsi~~~~~~~~--~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~ 625 (887)
...++.+.+..+..... .....+++|++|.+.++.. ....+..|.++++|++|+|++|.+..+|.. ++++++|++
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCC--CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence 35788999887655332 1345788999999998876 345567789999999999999999999877 489999999
Q ss_pred eecCCCceeeecCccccccch-hhhcccccCeeeecccccccccccchh-hhhh------ccCCcccccccccccccccc
Q 048733 626 LNARNTKILDLAHTFVSELPE-EIRNLKKLRSLIVFHYKYITGSIIPTE-AAAK------IHRGFGSLRGLQSLRGLLAL 697 (887)
Q Consensus 626 L~L~~~~~Ldl~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~------~p~~i~~L~~L~~L~~~~~l 697 (887)
|++++|. +..++. .+.++++|++|++++|. +++..+... .... ....+...++|+.|+ +
T Consensus 146 L~L~~n~--------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~----l 212 (390)
T 3o6n_A 146 LSMSNNN--------LERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD----A 212 (390)
T ss_dssp EECCSSC--------CCBCCTTTTSSCTTCCEEECCSSC-CSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEE----C
T ss_pred EECCCCc--------cCccChhhccCCCCCCEEECCCCc-CCccccccccccceeecccccccccCCCCcceEEE----C
Confidence 9998764 444433 45667777777777652 111000000 0000 000111223344444 3
Q ss_pred CceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-
Q 048733 698 PTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM- 776 (887)
Q Consensus 698 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~- 776 (887)
+.+.+.... ....++|+.|+++++..... ..+.++++|+.|++++|...+... ..+...+ +|+.|+|++|.
T Consensus 213 ~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~-~L~~L~L~~n~l 284 (390)
T 3o6n_A 213 SHNSINVVR---GPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQ-RLERLYISNNRL 284 (390)
T ss_dssp CSSCCCEEE---CCCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEES-GGGTTCS-SCCEEECCSSCC
T ss_pred CCCeeeecc---ccccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcCh-hHccccc-cCCEEECCCCcC
Confidence 333332111 12246788888887543332 467888999999999886654322 3444444 99999999874
Q ss_pred CCCChhhhcCCCcceeEEEecccCCcCc--CcCcccceeeeCcCCCceeEEEcCCCccCccEEEEccCCC
Q 048733 777 KKLPDWILKLKNLIGSRLILSGLTEDPI--SWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPL 844 (887)
Q Consensus 777 ~~lp~~~~~l~~L~~L~L~~~~l~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~ 844 (887)
..+|..+..+++|+.|+|++|.+...+. ..+++|+.|++.++. +..++ ...+++|+.|++++|+.
T Consensus 285 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 285 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred cccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCc
Confidence 5677777789999999999999886543 368999999999876 45453 67899999999999983
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=8.6e-20 Score=210.69 Aligned_cols=128 Identities=18% Similarity=0.254 Sum_probs=77.0
Q ss_pred hcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-C---CCChhhhcCCCcceeEEEecccCC-cC-------
Q 048733 736 ANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-K---KLPDWILKLKNLIGSRLILSGLTE-DP------- 803 (887)
Q Consensus 736 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~---~lp~~~~~l~~L~~L~L~~~~l~~-~~------- 803 (887)
..+++|+.|++++|...+... ..+...+ +|+.|++++|. . .+|.++..+++|+.|+|++|.+.. .+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVF-ENCGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTT-TTCCCCS-SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred hhCCcccEEEeECCccChhhh-hhhccCC-CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 345666667766665433211 2222233 56666665542 2 233445555666666666555544 22
Q ss_pred -----------------cCcC-cccceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCCccccc-cccCCCCCEEEEE
Q 048733 804 -----------------ISWF-PKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIG-IDHLRNLELLTFH 864 (887)
Q Consensus 804 -----------------~~~~-~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~ 864 (887)
+..+ ++|+.|++.++. +..+|.....+++|+.|++++|. ++.+|.. +.++++|++|+++
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred ccCCEEECcCCCCCcchhhhhcccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECc
Confidence 2223 466666666653 44566656678888888888886 6677776 7888889999988
Q ss_pred ech
Q 048733 865 DMS 867 (887)
Q Consensus 865 ~c~ 867 (887)
+||
T Consensus 477 ~N~ 479 (520)
T 2z7x_B 477 TNP 479 (520)
T ss_dssp SSC
T ss_pred CCC
Confidence 887
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=2.6e-19 Score=210.92 Aligned_cols=218 Identities=16% Similarity=0.124 Sum_probs=125.6
Q ss_pred eeeecCccccccchh-hhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhh
Q 048733 633 ILDLAHTFVSELPEE-IRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELM 711 (887)
Q Consensus 633 ~Ldl~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~ 711 (887)
.|++++|.+..+|.. +.++++|++|++++| ....+|..++.+++|++|. ++.+.+....+..+.
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-----------~l~~lp~~l~~l~~L~~L~----l~~n~l~~~~~~~~~ 322 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTAT-----------HLSELPSGLVGLSTLKKLV----LSANKFENLCQISAS 322 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTS-----------CCSCCCSSCCSCTTCCEEE----CTTCCCSBGGGGCGG
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCC-----------ccCCCChhhcccccCCEEE----CccCCcCcCchhhhh
Confidence 345555555555443 556666666666665 3345555566666666665 444444433334444
Q ss_pred ccccccceeEEeccCChhH--------------------------HHHHHhcccCCcEEEEeecCCccccccCccccccc
Q 048733 712 MLRQLNMLSIRRQNGNGRD--------------------------LCALIANLENVETLGVLMKSKEEILDLQSLSSPPQ 765 (887)
Q Consensus 712 ~l~~L~~L~l~~~~~~~~~--------------------------l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 765 (887)
.+++|+.|+++++...... .+..+.++++|+.|++++|...+.. ...+...+
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~- 400 (606)
T 3t6q_A 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK-TEAFKECP- 400 (606)
T ss_dssp GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC-TTTTTTCT-
T ss_pred ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC-HHHhcCCc-
Confidence 5555555554432111110 0223444555555555554332221 12233333
Q ss_pred ccceeEEeecc--CCC-ChhhhcCCCcceeEEEecccCCcC---cCcCcccceeeeCcCCCceeE-E--EcCCCccCccE
Q 048733 766 HLQYLSLRGNM--KKL-PDWILKLKNLIGSRLILSGLTEDP---ISWFPKLRKLVLLNFEAVKSV-I--IEKGAMPDIRE 836 (887)
Q Consensus 766 ~L~~L~L~~~~--~~l-p~~~~~l~~L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~-~--~~~~~lp~L~~ 836 (887)
+|+.|++++|. +.. +.++..+++|+.|+|++|.+...+ +..+++|++|++.++.-.... + ..+..+++|+.
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 67777777653 222 334667778888888877766543 336778888888877533322 1 23567889999
Q ss_pred EEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 837 LWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 837 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
|++++|......|..+..+++|++|++++|.
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCc
Confidence 9999987555557788899999999999885
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.78 E-value=9.4e-19 Score=201.99 Aligned_cols=300 Identities=14% Similarity=0.113 Sum_probs=168.7
Q ss_pred CCceEEEEecCCCccc--cccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceee
Q 048733 550 SKTRRITIQRSIDDGA--LESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLN 627 (887)
Q Consensus 550 ~~~r~lsi~~~~~~~~--~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~ 627 (887)
..++++.+..+..... .....+++|++|.+.++.. ....+..|.++++|++|+|++|.++.+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC--CEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCcc--CCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence 4566666665443221 1234556666666666554 233345566666666666666666666554 566666666
Q ss_pred cCCCceeeecCccccc--cchhhhcccccCeeeecccccccccccchh-------------h---hhhccCC--------
Q 048733 628 ARNTKILDLAHTFVSE--LPEEIRNLKKLRSLIVFHYKYITGSIIPTE-------------A---AAKIHRG-------- 681 (887)
Q Consensus 628 L~~~~~Ldl~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~-------------~---~~~~p~~-------- 681 (887)
+++ |.+.. +|..+.++++|++|++++|. +++..+... . ....|..
T Consensus 97 L~~--------N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~ 167 (520)
T 2z7x_B 97 LSF--------NAFDALPICKEFGNMSQLKFLGLSTTH-LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES 167 (520)
T ss_dssp CCS--------SCCSSCCCCGGGGGCTTCCEEEEEESS-CCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEE
T ss_pred ccC--------CccccccchhhhccCCcceEEEecCcc-cchhhccccccceeeEEEeecccccccccccccccccccce
Confidence 655 44554 56777788888888887752 222111000 0 0111222
Q ss_pred ------------------ccccccccccccccccCcee----c--chHHHHHhhccccccceeEEeccCChhHHHHHHh-
Q 048733 682 ------------------FGSLRGLQSLRGLLALPTIE----A--DSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIA- 736 (887)
Q Consensus 682 ------------------i~~L~~L~~L~~~~~l~~~~----~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~- 736 (887)
+.++++|+.|+ ++.+. + -...+..++.+++|+.|++..+......+.....
T Consensus 168 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~----l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 168 LHIVFPTNKEFHFILDVSVKTVANLELSN----IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp EEEECCSSSCCCCCCCCCCTTCSEEEECC----EEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEeccCcchhhhhhhhhhcccceeecc----ccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH
Confidence 23355666655 33332 0 1123346788888888888764333322222211
Q ss_pred -cccCCcEEEEeecCCccccccCcc----cccccccceeEEeeccCCCC-hh-------------------------hhc
Q 048733 737 -NLENVETLGVLMKSKEEILDLQSL----SSPPQHLQYLSLRGNMKKLP-DW-------------------------ILK 785 (887)
Q Consensus 737 -~~~~L~~L~l~~~~~~~~~~l~~l----~~~~~~L~~L~L~~~~~~lp-~~-------------------------~~~ 785 (887)
..++|+.|++++|...+..+ ..+ ....++|+.++++++.-.+| .+ ...
T Consensus 244 ~~~~~L~~L~l~~n~l~~~~p-~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 322 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQGQLD-FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322 (520)
T ss_dssp HHTSSCSEEEEEEEEEESCCC-CCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred hhhCcccEEEeecccccCccc-cchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhh
Confidence 24688999888775432221 111 01111444444444322333 11 156
Q ss_pred CCCcceeEEEecccCCc---CcCcCcccceeeeCcCCCce--eEEEcCCCccCccEEEEccCCCCCccccc-cccCCCCC
Q 048733 786 LKNLIGSRLILSGLTED---PISWFPKLRKLVLLNFEAVK--SVIIEKGAMPDIRELWIGPCPLLMEIPIG-IDHLRNLE 859 (887)
Q Consensus 786 l~~L~~L~L~~~~l~~~---~~~~~~~L~~L~l~~~~~l~--~~~~~~~~lp~L~~L~l~~c~~l~~lp~~-~~~l~~L~ 859 (887)
+++|++|+|++|.+... .+..+++|++|++.++.-.. .++..++.+++|+.|++++|.....+|.. +..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 78888888888887763 23467888888888765322 33445677888999999888755447764 67888999
Q ss_pred EEEEEech
Q 048733 860 LLTFHDMS 867 (887)
Q Consensus 860 ~L~l~~c~ 867 (887)
+|++++|.
T Consensus 403 ~L~Ls~N~ 410 (520)
T 2z7x_B 403 SLNMSSNI 410 (520)
T ss_dssp EEECCSSC
T ss_pred EEECcCCC
Confidence 99998886
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=3.2e-20 Score=198.58 Aligned_cols=243 Identities=16% Similarity=0.181 Sum_probs=142.3
Q ss_pred eeEEEEecCCCCC---CCccccccccccceeecCC-CceeeecCccccccchhhhcccccCeeeecccccccccccchhh
Q 048733 599 LMKVLDLEDSPIN---YLPEGVGNLFNLHLLNARN-TKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEA 674 (887)
Q Consensus 599 ~Lr~L~L~~~~l~---~lp~~i~~L~~L~~L~L~~-~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 674 (887)
.++.|+|+++.+. .+|..++++++|++|++++ |. ....+|..+.++++|++|++++|. .
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-------l~~~~p~~l~~l~~L~~L~Ls~n~----------l 113 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-------LVGPIPPAIAKLTQLHYLYITHTN----------V 113 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-------EESCCCGGGGGCTTCSEEEEEEEC----------C
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-------ccccCChhHhcCCCCCEEECcCCe----------e
Confidence 3444444444444 2444444444444444442 21 112344444444445555444441 1
Q ss_pred hhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhccc-CCcEEEEeecCCcc
Q 048733 675 AAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLE-NVETLGVLMKSKEE 753 (887)
Q Consensus 675 ~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~-~L~~L~l~~~~~~~ 753 (887)
...+|..++++++|++|+ ++.+.+....+..+..+++|+.|+++++... ..++..+.+++ +|+.|++++|...+
T Consensus 114 ~~~~p~~~~~l~~L~~L~----Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 114 SGAIPDFLSQIKTLVTLD----FSYNALSGTLPPSISSLPNLVGITFDGNRIS-GAIPDSYGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp EEECCGGGGGCTTCCEEE----CCSSEEESCCCGGGGGCTTCCEEECCSSCCE-EECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred CCcCCHHHhCCCCCCEEe----CCCCccCCcCChHHhcCCCCCeEECcCCccc-CcCCHHHhhhhhcCcEEECcCCeeec
Confidence 113333444444444444 3344443333444555555666655543221 12344556665 77777777665433
Q ss_pred ccccCcccccccccceeEEeecc--CCCChhhhcCCCcceeEEEecccCCcC--cCcCcccceeeeCcCCCceeEEEcCC
Q 048733 754 ILDLQSLSSPPQHLQYLSLRGNM--KKLPDWILKLKNLIGSRLILSGLTEDP--ISWFPKLRKLVLLNFEAVKSVIIEKG 829 (887)
Q Consensus 754 ~~~l~~l~~~~~~L~~L~L~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~ 829 (887)
... ..+. .. .|+.|++++|. +..|..+..+++|+.|+|++|.+...+ +..+++|++|++.++.-...+|..+.
T Consensus 189 ~~~-~~~~-~l-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 189 KIP-PTFA-NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp ECC-GGGG-GC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred cCC-hHHh-CC-cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHh
Confidence 221 1222 22 38888888764 356777888888999999888876533 34678888888888764446676778
Q ss_pred CccCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 830 AMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 830 ~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
.+++|+.|++++|+....+|.. .++++|+.|++.+||
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 8899999999988865577765 788899999888887
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=6.7e-19 Score=198.15 Aligned_cols=277 Identities=16% Similarity=0.135 Sum_probs=164.2
Q ss_pred CCCceEEEEecCCCccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeec
Q 048733 549 CSKTRRITIQRSIDDGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNA 628 (887)
Q Consensus 549 ~~~~r~lsi~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L 628 (887)
...++++.+..+..........+++|+.|.+.++.... + .+..+++|++|+|++|.++.+| ++++++|++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~--~---~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT--L---DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC--C---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe--E---ccccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 45688888887655433345568899999998886522 2 2788899999999999998875 889999999998
Q ss_pred CCCc-------------eeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhccCCcccccccccccccc
Q 048733 629 RNTK-------------ILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLL 695 (887)
Q Consensus 629 ~~~~-------------~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~ 695 (887)
++|. +|++++|.+..+| +.++++|++|++++|.. ...+ .++.+++|+.|+
T Consensus 114 ~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~----------~~~~--~~~~l~~L~~L~--- 176 (457)
T 3bz5_A 114 DTNKLTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKK----------ITKL--DVTPQTQLTTLD--- 176 (457)
T ss_dssp CSSCCSCCCCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSC----------CCCC--CCTTCTTCCEEE---
T ss_pred CCCcCCeecCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCc----------cccc--ccccCCcCCEEE---
Confidence 8875 4555555554443 44555555555555411 1111 245555666655
Q ss_pred ccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeec
Q 048733 696 ALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGN 775 (887)
Q Consensus 696 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 775 (887)
++.+.+.... ++.+++|+.|+++.+..... .+..+++|+.|++++|...+. + +...+ +|+.|++++|
T Consensus 177 -ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~i---p-~~~l~-~L~~L~l~~N 243 (457)
T 3bz5_A 177 -CSFNKITELD---VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTEI---D-VTPLT-QLTYFDCSVN 243 (457)
T ss_dssp -CCSSCCCCCC---CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCC---C-CTTCT-TCSEEECCSS
T ss_pred -CCCCccceec---cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCccccc---C-ccccC-CCCEEEeeCC
Confidence 4444443321 55566666666655322221 245556666666666554431 1 22233 6666666665
Q ss_pred c-CCCChhhhcCCCcceeEEEecccCC-----------cCcCcCcccceeeeCcCCCceeEEEc--------CCCccCcc
Q 048733 776 M-KKLPDWILKLKNLIGSRLILSGLTE-----------DPISWFPKLRKLVLLNFEAVKSVIIE--------KGAMPDIR 835 (887)
Q Consensus 776 ~-~~lp~~~~~l~~L~~L~L~~~~l~~-----------~~~~~~~~L~~L~l~~~~~l~~~~~~--------~~~lp~L~ 835 (887)
. ..+| +..+++|+.|+++++.+.. .+...+++|+.|++.+|..++.++.. +..+|+|+
T Consensus 244 ~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 244 PLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLV 321 (457)
T ss_dssp CCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred cCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCC
Confidence 3 3333 2334444433333333222 12235577777777777666655532 33456777
Q ss_pred EEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 836 ELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 836 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
.|++++|. ++.++ +.+|++|+.|++++|.
T Consensus 322 ~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 322 YLYLNNTE-LTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp EEECTTCC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred EEECCCCc-ccccc--cccCCcCcEEECCCCC
Confidence 77777765 45554 7788888888888776
No 30
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.78 E-value=1.6e-19 Score=158.41 Aligned_cols=109 Identities=28% Similarity=0.578 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh--hhcccccCCchhHHHHHHHHHHHhhhchhh
Q 048733 4 AAVNFALETLGPLLVEEIRLLGGVRKEVQSIKSELESLRSFLKDADAR--AAVEELEGGGEESVRTWVKQLRDEAYRIED 81 (887)
Q Consensus 4 ~~v~~~~~kl~~~l~~e~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~~~~~~~~wl~~lr~~ayd~eD 81 (887)
|+|+++++||++++.+|+.++.||++++++|+++|++|++||.+|+.+ +..+ ++++.|++|||++|||+||
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d-------~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLD-------SQDKLWADEVRELSYVIED 73 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCC-------HHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------HHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999987 3344 8999999999999999999
Q ss_pred hHHHHHHHHhcCCCC---CCccchhhhHHHHHHhhHHHHHH
Q 048733 82 FIDEYALMVAKLPHE---SGLVGVLHRISRFIKKLRRRRGV 119 (887)
Q Consensus 82 ~lD~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 119 (887)
|||+|.++....+.. .|+.+.++++.+.+++++.||++
T Consensus 74 ~iD~f~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~rh~i 114 (115)
T 3qfl_A 74 VVDKFLVQVDGIKSDDNNNKFKGLMKRTTELLKKVKHKHGI 114 (115)
T ss_dssp HHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcccCcccccchHHHHHHHHHHHHhhhHHhccC
Confidence 999999988652211 12233344444555555555543
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=3.7e-19 Score=209.54 Aligned_cols=113 Identities=14% Similarity=0.091 Sum_probs=85.0
Q ss_pred CCCCceEEEEecCCCcc--ccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCC--CCcccccccccc
Q 048733 548 HCSKTRRITIQRSIDDG--ALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPIN--YLPEGVGNLFNL 623 (887)
Q Consensus 548 ~~~~~r~lsi~~~~~~~--~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~--~lp~~i~~L~~L 623 (887)
...++++|.+..+.... +.....+++|++|.+.++.. ....+..+.++++|++|+|++|.+. .+|..++++++|
T Consensus 78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 155 (606)
T 3vq2_A 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL--ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155 (606)
T ss_dssp TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC--CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTC
T ss_pred chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc--ccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCC
Confidence 34568888887664432 22345688888888888765 2334456888999999999999887 578889999999
Q ss_pred ceeecCCCc--------------------eeeecCccccccchhhhcccccCeeeeccc
Q 048733 624 HLLNARNTK--------------------ILDLAHTFVSELPEEIRNLKKLRSLIVFHY 662 (887)
Q Consensus 624 ~~L~L~~~~--------------------~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~ 662 (887)
++|++++|. +|++++|.+..+|..+....+|++|++++|
T Consensus 156 ~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp CEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred CEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence 999999876 488888888888877766667888877775
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=202.33 Aligned_cols=298 Identities=16% Similarity=0.147 Sum_probs=169.6
Q ss_pred CCCCceEEEEecCCCccc--cccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCc-cccccccccc
Q 048733 548 HCSKTRRITIQRSIDDGA--LESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLP-EGVGNLFNLH 624 (887)
Q Consensus 548 ~~~~~r~lsi~~~~~~~~--~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~L~ 624 (887)
.+..++++.+..+..... .....+++|++|.+.++.. ..+.+..|.++++|++|+|++|.+..+| ..++++++|+
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC--CccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence 345688898887655332 1345788999999988865 3455667889999999999999988765 6789999999
Q ss_pred eeecCCCc----------------eeeecCccccc--cchhhhcccccCeeeecccccccccccchhhhhhc-cCCcccc
Q 048733 625 LLNARNTK----------------ILDLAHTFVSE--LPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKI-HRGFGSL 685 (887)
Q Consensus 625 ~L~L~~~~----------------~Ldl~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-p~~i~~L 685 (887)
+|++++|. +|++++|.+.. +|..+.++++|++|++++|. ...+ |..++.+
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-----------l~~~~~~~~~~l 172 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-----------IQSIYCTDLRVL 172 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-----------CCEECGGGGHHH
T ss_pred cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-----------cceecHHHccch
Confidence 99998774 66777776654 56777777777777777651 2222 2234444
Q ss_pred ccc----cccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCc---------
Q 048733 686 RGL----QSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKE--------- 752 (887)
Q Consensus 686 ~~L----~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~--------- 752 (887)
++| ..|. ++.+.+....+..+..+ +|+.|++.++......++..+..+++++.+.+......
T Consensus 173 ~~L~~~~~~L~----l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 173 HQMPLLNLSLD----LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp HTCTTCCCEEE----CTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred hccchhhhhcc----cCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 444 2333 33333322222222222 45555555432233334444444444444333211000
Q ss_pred -----------------------cccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcCcCc--
Q 048733 753 -----------------------EILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDPISW-- 806 (887)
Q Consensus 753 -----------------------~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~-- 806 (887)
.......+... ++|+.|+++++. ..+|.++..+ +|+.|++++|.+...+...
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~ 325 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL-TNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLK 325 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG-TTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCS
T ss_pred hhhhccccccchhhhhhhcchhhhhhchhhhcCc-CcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCccccc
Confidence 00000112222 266666666642 4566666555 6666666666655444444
Q ss_pred --------------------CcccceeeeCcCCCceeE---EEcCCCccCccEEEEccCCCCCccccccccCCCCCEEEE
Q 048733 807 --------------------FPKLRKLVLLNFEAVKSV---IIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTF 863 (887)
Q Consensus 807 --------------------~~~L~~L~l~~~~~l~~~---~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 863 (887)
+++|+.|++.++. +..+ +.....+++|+.|++++|. +..+|..+..+++|++|++
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l 403 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDF 403 (570)
T ss_dssp SCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEEC
T ss_pred ccCEEeCcCCccccccccccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEc
Confidence 4555555555443 2222 2334456677777776665 4445555677777777777
Q ss_pred Eech
Q 048733 864 HDMS 867 (887)
Q Consensus 864 ~~c~ 867 (887)
++|.
T Consensus 404 ~~n~ 407 (570)
T 2z63_A 404 QHSN 407 (570)
T ss_dssp TTSE
T ss_pred cCCc
Confidence 7664
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=3.4e-19 Score=208.61 Aligned_cols=275 Identities=14% Similarity=0.117 Sum_probs=210.2
Q ss_pred CCCceEEEEecCCCcccc--ccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccc-cccccccce
Q 048733 549 CSKTRRITIQRSIDDGAL--ESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEG-VGNLFNLHL 625 (887)
Q Consensus 549 ~~~~r~lsi~~~~~~~~~--~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~ 625 (887)
...++.|.+.++...... ....+++|++|.+.++.. ....+..|.++++|++|+|++|.+..+|.. ++++++|++
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC--CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence 357899999876553322 345789999999998876 345667789999999999999999999876 589999999
Q ss_pred eecCCCceeeecCccccccch-hhhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecch
Q 048733 626 LNARNTKILDLAHTFVSELPE-EIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADS 704 (887)
Q Consensus 626 L~L~~~~~Ldl~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~ 704 (887)
|+|++|. +..+|+ .+.++++|++|++++| ....++ ++.+++|+.|. ++.+.+..
T Consensus 152 L~Ls~N~--------l~~~~~~~~~~l~~L~~L~L~~N-----------~l~~~~--~~~l~~L~~L~----l~~n~l~~ 206 (597)
T 3oja_B 152 LSMSNNN--------LERIEDDTFQATTSLQNLQLSSN-----------RLTHVD--LSLIPSLFHAN----VSYNLLST 206 (597)
T ss_dssp EECCSSC--------CCBCCTTTTTTCTTCCEEECTTS-----------CCSBCC--GGGCTTCSEEE----CCSSCCSE
T ss_pred EEeeCCc--------CCCCChhhhhcCCcCcEEECcCC-----------CCCCcC--hhhhhhhhhhh----cccCcccc
Confidence 9998764 666554 6889999999999997 233332 56677888887 55554432
Q ss_pred HHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc--CCCChh
Q 048733 705 QVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM--KKLPDW 782 (887)
Q Consensus 705 ~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--~~lp~~ 782 (887)
+...++|+.|+++++..... +. ...++|+.|++++|...+. ..+...+ +|+.|+|++|. +..|..
T Consensus 207 -----l~~~~~L~~L~ls~n~l~~~--~~--~~~~~L~~L~L~~n~l~~~---~~l~~l~-~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 207 -----LAIPIAVEELDASHNSINVV--RG--PVNVELTILKLQHNNLTDT---AWLLNYP-GLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp -----EECCTTCSEEECCSSCCCEE--EC--SCCSCCCEEECCSSCCCCC---GGGGGCT-TCSEEECCSSCCCEEESGG
T ss_pred -----ccCCchhheeeccCCccccc--cc--ccCCCCCEEECCCCCCCCC---hhhccCC-CCCEEECCCCccCCCCHHH
Confidence 34556788998886432211 11 1136899999998876553 3444445 99999999974 346888
Q ss_pred hhcCCCcceeEEEecccCCcCcC--cCcccceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCCccccccccCCCCCE
Q 048733 783 ILKLKNLIGSRLILSGLTEDPIS--WFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLEL 860 (887)
Q Consensus 783 ~~~l~~L~~L~L~~~~l~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 860 (887)
+..+++|+.|+|++|.+...+.. .+++|+.|++.+|. +..+|...+.+++|+.|++++|. +..+| +..+++|+.
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~ 349 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKN 349 (597)
T ss_dssp GTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSE
T ss_pred hcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCE
Confidence 99999999999999998875433 58999999999975 55677677789999999999998 55565 678999999
Q ss_pred EEEEech
Q 048733 861 LTFHDMS 867 (887)
Q Consensus 861 L~l~~c~ 867 (887)
|++++||
T Consensus 350 L~l~~N~ 356 (597)
T 3oja_B 350 LTLSHND 356 (597)
T ss_dssp EECCSSC
T ss_pred EEeeCCC
Confidence 9999988
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=9.2e-19 Score=199.64 Aligned_cols=268 Identities=19% Similarity=0.176 Sum_probs=213.9
Q ss_pred CCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCC-ccccccccccceeecCCCceeeecCccccccchh-h
Q 048733 571 DSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYL-PEGVGNLFNLHLLNARNTKILDLAHTFVSELPEE-I 648 (887)
Q Consensus 571 ~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~-i 648 (887)
.++++.|.+.++.. ..+.+..|.++++|++|+|++|.+..+ |..++++++|++|+|++| .+..+|.. +
T Consensus 31 ~~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~ 100 (477)
T 2id5_A 31 PTETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN--------RLKLIPLGVF 100 (477)
T ss_dssp CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS--------CCCSCCTTSS
T ss_pred CCCCcEEECCCCcc--ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC--------cCCccCcccc
Confidence 46899999998876 345567889999999999999999966 788999999999999875 47888875 5
Q ss_pred hcccccCeeeecccccccccccchhhhhh-ccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCC
Q 048733 649 RNLKKLRSLIVFHYKYITGSIIPTEAAAK-IHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGN 727 (887)
Q Consensus 649 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 727 (887)
.++++|++|++++| .... .|..+..+++|+.|. ++.+.+....+..+..+++|+.|+++++...
T Consensus 101 ~~l~~L~~L~Ls~n-----------~i~~~~~~~~~~l~~L~~L~----l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 101 TGLSNLTKLDISEN-----------KIVILLDYMFQDLYNLKSLE----VGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp TTCTTCCEEECTTS-----------CCCEECTTTTTTCTTCCEEE----ECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred cCCCCCCEEECCCC-----------ccccCChhHccccccCCEEE----CCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 79999999999998 3333 355688999999998 6666665555667889999999999975332
Q ss_pred hhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc--CCCChhhhcCCCcceeEEEecccCCcC--
Q 048733 728 GRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM--KKLPDWILKLKNLIGSRLILSGLTEDP-- 803 (887)
Q Consensus 728 ~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~~~-- 803 (887)
. ..+..+.++++|+.|++.+|....... ..+...+ +|+.|+++++. +.+|.......+|+.|+|++|.+...+
T Consensus 166 ~-~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 242 (477)
T 2id5_A 166 S-IPTEALSHLHGLIVLRLRHLNINAIRD-YSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242 (477)
T ss_dssp S-CCHHHHTTCTTCCEEEEESCCCCEECT-TCSCSCT-TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH
T ss_pred c-cChhHhcccCCCcEEeCCCCcCcEeCh-hhcccCc-ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH
Confidence 2 224568899999999999887655322 3344444 99999999863 567777777779999999999998766
Q ss_pred -cCcCcccceeeeCcCCCceeEEE-cCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 804 -ISWFPKLRKLVLLNFEAVKSVII-EKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 804 -~~~~~~L~~L~l~~~~~l~~~~~-~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
+..+++|+.|++.++. +..++. .+..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 243 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp HHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred HhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 4578999999999876 555543 36789999999999998555567889999999999999985
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.77 E-value=4.9e-19 Score=205.94 Aligned_cols=154 Identities=17% Similarity=0.151 Sum_probs=88.7
Q ss_pred hccccccceeEEeccCChhHH--HHHHhcccCCcEEEEeecCCcccccc-CcccccccccceeEEeec-cCCCChhhhcC
Q 048733 711 MMLRQLNMLSIRRQNGNGRDL--CALIANLENVETLGVLMKSKEEILDL-QSLSSPPQHLQYLSLRGN-MKKLPDWILKL 786 (887)
Q Consensus 711 ~~l~~L~~L~l~~~~~~~~~l--~~~l~~~~~L~~L~l~~~~~~~~~~l-~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l 786 (887)
..+++|+.|+++++....... +..+..+++|+.|++++|...+.... ..+...+ +|+.|++++| +..+|.++..+
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~~ 409 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK-NLTSLDISRNTFHPMPDSCQWP 409 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT-TCCEEECTTCCCCCCCSCCCCC
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC-CCCEEECCCCCCccCChhhccc
Confidence 345666666665433222211 11134555666666665544322110 1122222 6666666654 24555555555
Q ss_pred CCcceeEEEecccCCcCc--------------------CcCcccceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCC
Q 048733 787 KNLIGSRLILSGLTEDPI--------------------SWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLM 846 (887)
Q Consensus 787 ~~L~~L~L~~~~l~~~~~--------------------~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~ 846 (887)
++|+.|+|++|.+...+. ..+++|++|++.++. +..+|. .+.+++|+.|++++|....
T Consensus 410 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~ip~-~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTLPD-ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp TTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSCCC-GGGCTTCCEEECCSSCCCC
T ss_pred ccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cCcCCC-cccCccCCEEecCCCccCC
Confidence 555555555555443221 257777777777763 555654 3568899999999887544
Q ss_pred ccccccccCCCCCEEEEEech
Q 048733 847 EIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 847 ~lp~~~~~l~~L~~L~l~~c~ 867 (887)
..|..+..+++|+.|++++||
T Consensus 488 ~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 488 VPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCTTGGGGCTTCCEEECCSSC
T ss_pred cCHHHHhcCcccCEEEecCCC
Confidence 445568899999999999887
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=8.1e-19 Score=205.18 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=74.9
Q ss_pred ccceeEEeecc--CCCChhhhcCCCcceeEEEecccCC----cCcCcCcccceeeeCcCCCceeE-EEcCCCccCccEEE
Q 048733 766 HLQYLSLRGNM--KKLPDWILKLKNLIGSRLILSGLTE----DPISWFPKLRKLVLLNFEAVKSV-IIEKGAMPDIRELW 838 (887)
Q Consensus 766 ~L~~L~L~~~~--~~lp~~~~~l~~L~~L~L~~~~l~~----~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~lp~L~~L~ 838 (887)
+|+.|++++|. ...|..+..+++|+.|+|++|.+.. ..+..+++|+.|++.+|. +..+ +..++.+++|+.|+
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEE
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEe
Confidence 78888887763 3466677778888888888887752 234467888888888875 4444 55667889999999
Q ss_pred EccCCCCCccccccccCCCCCEEEEEech
Q 048733 839 IGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 839 l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
+++|......|..+.++++|++|++++||
T Consensus 501 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 99887444444567889999999999887
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=1.5e-18 Score=196.79 Aligned_cols=282 Identities=16% Similarity=0.152 Sum_probs=195.9
Q ss_pred CCCCceEEEEecCCCc--cc-cccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCC-Cccc--ccccc
Q 048733 548 HCSKTRRITIQRSIDD--GA-LESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINY-LPEG--VGNLF 621 (887)
Q Consensus 548 ~~~~~r~lsi~~~~~~--~~-~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-lp~~--i~~L~ 621 (887)
...++++|.+..+... .. .....+++|++|.+.++.. ....+..|.++++|++|+|++|.+.. .|.. ++.++
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF--LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT--CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCcc--CccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence 4567899999876542 21 2245789999999998876 34556788999999999999999984 4544 89999
Q ss_pred ccceeecCCCc-----------------eeeecCcccccc-chhhhcc--------------------------------
Q 048733 622 NLHLLNARNTK-----------------ILDLAHTFVSEL-PEEIRNL-------------------------------- 651 (887)
Q Consensus 622 ~L~~L~L~~~~-----------------~Ldl~~~~l~~l-p~~i~~l-------------------------------- 651 (887)
+|++|++++|. +|++++|.+..+ |..+.++
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 209 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccc
Confidence 99999999886 899999988765 4455544
Q ss_pred --cccCeeeecccccccccccchhhhhhccCCccc---cccccccccccccCceec----------chHHHHHhh--ccc
Q 048733 652 --KKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGS---LRGLQSLRGLLALPTIEA----------DSQVLKELM--MLR 714 (887)
Q Consensus 652 --~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~---L~~L~~L~~~~~l~~~~~----------~~~~~~~l~--~l~ 714 (887)
++|++|++++|. + ....|..+.. .++|+.|. ++.+.. .......+. ..+
T Consensus 210 ~~~~L~~L~Ls~n~-l---------~~~~~~~~~~~~~~~~L~~L~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (455)
T 3v47_A 210 KNTSITTLDLSGNG-F---------KESMAKRFFDAIAGTKIQSLI----LSNSYNMGSSFGHTNFKDPDNFTFKGLEAS 275 (455)
T ss_dssp TTCEEEEEECTTSC-C---------CHHHHHHHHHHTTTCCEEEEE----CTTCTTTSCCTTCCSSCCCCTTTTGGGTTS
T ss_pred ccceeeeEecCCCc-c---------cccchhhhhccccccceeeEe----eccccccccccchhhhccCccccccccccc
Confidence 445555555541 1 1122222222 25666665 332211 001111122 236
Q ss_pred cccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CC-CChhhhcCCCccee
Q 048733 715 QLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KK-LPDWILKLKNLIGS 792 (887)
Q Consensus 715 ~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~-lp~~~~~l~~L~~L 792 (887)
+|+.|+++++... ...+..+.++++|+.|++++|...+... ..+...+ +|+.|+|++|. .. .|..+..+++|+.|
T Consensus 276 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 276 GVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDD-NAFWGLT-HLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp CCCEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCT-TCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred CceEEEecCcccc-ccchhhcccCCCCCEEECCCCcccccCh-hHhcCcc-cCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 8999999864332 2245567889999999999887654322 3444444 99999999974 43 46778899999999
Q ss_pred EEEecccCCcC---cCcCcccceeeeCcCCCceeEEEc-CCCccCccEEEEccCCCCCccc
Q 048733 793 RLILSGLTEDP---ISWFPKLRKLVLLNFEAVKSVIIE-KGAMPDIRELWIGPCPLLMEIP 849 (887)
Q Consensus 793 ~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~~~~-~~~lp~L~~L~l~~c~~l~~lp 849 (887)
+|++|.+...+ +..+++|++|++.++. +..++.. +..+++|+.|++++|+.....|
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999987653 4478999999999975 5666554 4789999999999998655555
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.76 E-value=4.7e-18 Score=191.22 Aligned_cols=258 Identities=16% Similarity=0.125 Sum_probs=156.3
Q ss_pred CCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCc-------------eeee
Q 048733 570 KDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTK-------------ILDL 636 (887)
Q Consensus 570 ~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~-------------~Ldl 636 (887)
.+++|++|.+.++... .. + .+..+++|++|+|++|.++.+| ++.+++|++|++++|. +|++
T Consensus 40 ~l~~L~~L~Ls~n~l~--~~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT--DM-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCC--CC-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcc--cC-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceeecCCCCcCCEEEC
Confidence 4567777777766542 11 2 4566777777777777777665 6777777777777664 6777
Q ss_pred cCccccccchhhhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccc
Q 048733 637 AHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQL 716 (887)
Q Consensus 637 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L 716 (887)
++|.+..+| +.++++|++|++++| ....++ ++.+++|+.|. ++.+...... .++.+++|
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N-----------~l~~l~--l~~l~~L~~L~----l~~n~~~~~~--~~~~l~~L 172 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARN-----------TLTEID--VSHNTQLTELD----CHLNKKITKL--DVTPQTQL 172 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTS-----------CCSCCC--CTTCTTCCEEE----CTTCSCCCCC--CCTTCTTC
T ss_pred CCCcCCeec--CCCCCcCCEEECCCC-----------ccceec--cccCCcCCEEE----CCCCCccccc--ccccCCcC
Confidence 777666665 667777777777765 222332 66677777776 4444221111 35667777
Q ss_pred cceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEE
Q 048733 717 NMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLI 795 (887)
Q Consensus 717 ~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~ 795 (887)
+.|+++++.... ++ +..+++|+.|++++|..... .+...+ +|+.|++++|. ..+| +..+++|+.|+|+
T Consensus 173 ~~L~ls~n~l~~--l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~-~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 173 TTLDCSFNKITE--LD--VSQNKLLNRLNCDTNNITKL----DLNQNI-QLTFLDCSSNKLTEID--VTPLTQLTYFDCS 241 (457)
T ss_dssp CEEECCSSCCCC--CC--CTTCTTCCEEECCSSCCSCC----CCTTCT-TCSEEECCSSCCSCCC--CTTCTTCSEEECC
T ss_pred CEEECCCCccce--ec--cccCCCCCEEECcCCcCCee----ccccCC-CCCEEECcCCcccccC--ccccCCCCEEEee
Confidence 777776543322 22 55667777777776654432 233333 77777777753 4566 5667777777777
Q ss_pred ecccCCcCcCcCccccee----------eeCcCCCceeEEEcCCCccCccEEEEccCCCCCcccc--------ccccCCC
Q 048733 796 LSGLTEDPISWFPKLRKL----------VLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPI--------GIDHLRN 857 (887)
Q Consensus 796 ~~~l~~~~~~~~~~L~~L----------~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~--------~~~~l~~ 857 (887)
+|.+...++..|++|+.| ++.+|..+..+| .+.+++|+.|++++|+.++.+|. .+.++++
T Consensus 242 ~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 242 VNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp SSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred CCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 777776666666655443 334444344444 35567777777777766665553 1344556
Q ss_pred CCEEEEEech
Q 048733 858 LELLTFHDMS 867 (887)
Q Consensus 858 L~~L~l~~c~ 867 (887)
|++|++++|.
T Consensus 320 L~~L~L~~N~ 329 (457)
T 3bz5_A 320 LVYLYLNNTE 329 (457)
T ss_dssp CCEEECTTCC
T ss_pred CCEEECCCCc
Confidence 6666655553
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=210.83 Aligned_cols=294 Identities=18% Similarity=0.154 Sum_probs=170.0
Q ss_pred CCCCceEEEEecCCCcc--ccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCC-ccccccccccc
Q 048733 548 HCSKTRRITIQRSIDDG--ALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYL-PEGVGNLFNLH 624 (887)
Q Consensus 548 ~~~~~r~lsi~~~~~~~--~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~L~ 624 (887)
.+..+++|.+..+.... +.....+++|+.|.+.++... ..+.+..|.++++|++|+|++|.+..+ |..++++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~-~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC-CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc-cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 45678889888765532 223557888999999887542 234467788999999999999998855 78889999999
Q ss_pred eeecCCCceeeecCccccc-cchh--hhcccccCeeeecccccccccccchhhhhhc--cCCccccccccccccccccCc
Q 048733 625 LLNARNTKILDLAHTFVSE-LPEE--IRNLKKLRSLIVFHYKYITGSIIPTEAAAKI--HRGFGSLRGLQSLRGLLALPT 699 (887)
Q Consensus 625 ~L~L~~~~~Ldl~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--p~~i~~L~~L~~L~~~~~l~~ 699 (887)
+|+|++|. +.. +|.. +.++++|++|++++|. ...+ +..+++|++|++|+ ++.
T Consensus 101 ~L~Ls~n~--------l~~~~~~~~~~~~L~~L~~L~Ls~N~-----------l~~~~~~~~~~~L~~L~~L~----Ls~ 157 (844)
T 3j0a_A 101 ELRLYFCG--------LSDAVLKDGYFRNLKALTRLDLSKNQ-----------IRSLYLHPSFGKLNSLKSID----FSS 157 (844)
T ss_dssp CEECTTCC--------CSSCCSTTCCCSSCSSCCEEEEESCC-----------CCCCCCCGGGGTCSSCCEEE----EES
T ss_pred EeeCcCCC--------CCcccccCccccccCCCCEEECCCCc-----------ccccccchhHhhCCCCCEEE----CCC
Confidence 99888764 432 4444 6677777777777762 2222 23467777777776 555
Q ss_pred eecchHHHHHhhcc--ccccceeEEeccCChhHHHHHHhccc------CCcEEEEeecCCccccc---------------
Q 048733 700 IEADSQVLKELMML--RQLNMLSIRRQNGNGRDLCALIANLE------NVETLGVLMKSKEEILD--------------- 756 (887)
Q Consensus 700 ~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~l~~~l~~~~------~L~~L~l~~~~~~~~~~--------------- 756 (887)
+.+....+..+..+ ++|+.|+++.+..... .+..+..+. +|+.|++++|.......
T Consensus 158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSR-VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCC-CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred CcCCeeCHHHcccccCCccceEECCCCccccc-cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 55543333334444 5666666665322110 111111121 25666665552211000
Q ss_pred --------------------cCcccc-cccccceeEEeecc-C-CCChhhhcCCCcceeEEEecccCCcC---cCcCccc
Q 048733 757 --------------------LQSLSS-PPQHLQYLSLRGNM-K-KLPDWILKLKNLIGSRLILSGLTEDP---ISWFPKL 810 (887)
Q Consensus 757 --------------------l~~l~~-~~~~L~~L~L~~~~-~-~lp~~~~~l~~L~~L~L~~~~l~~~~---~~~~~~L 810 (887)
...+.. .+++|+.|+|++|. . ..|..+..+++|+.|+|++|.+...+ +..+++|
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 316 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCC
Confidence 000000 01256666666653 2 23455666667777777776665432 3355666
Q ss_pred ceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCCcc-ccccccCCCCCEEEEEech
Q 048733 811 RKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEI-PIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 811 ~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~c~ 867 (887)
++|++.++.-....+..+..+++|+.|++++|. +..+ +..+.++++|+.|++++|.
T Consensus 317 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCC
Confidence 666666654222223445566666666666665 3333 3345666666666666664
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=4.9e-18 Score=206.99 Aligned_cols=297 Identities=12% Similarity=0.023 Sum_probs=182.1
Q ss_pred CCCCceEEEEecCCC--cc-ccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCC-Cccc--ccccc
Q 048733 548 HCSKTRRITIQRSID--DG-ALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINY-LPEG--VGNLF 621 (887)
Q Consensus 548 ~~~~~r~lsi~~~~~--~~-~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-lp~~--i~~L~ 621 (887)
....++.|.+..+.. .. +.....+++|++|.+.++.. ....+..|.++++|++|+|++|.+.. +|.. +++++
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l--~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI--YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC--CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC--cccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 456789999987632 22 22356789999999998876 34567889999999999999999984 5655 89999
Q ss_pred ccceeecCCCceeeecCcccccc--chhhhcccccCeeeecccccccccccchh-----------------hhhhccCCc
Q 048733 622 NLHLLNARNTKILDLAHTFVSEL--PEEIRNLKKLRSLIVFHYKYITGSIIPTE-----------------AAAKIHRGF 682 (887)
Q Consensus 622 ~L~~L~L~~~~~Ldl~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~~~~~~-----------------~~~~~p~~i 682 (887)
+|++|+|++|. +..+ |..+.++++|++|++++|. +++..+... .....|..+
T Consensus 124 ~L~~L~Ls~N~--------l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~ 194 (844)
T 3j0a_A 124 ALTRLDLSKNQ--------IRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194 (844)
T ss_dssp SCCEEEEESCC--------CCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC
T ss_pred CCCEEECCCCc--------ccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcccccCCccceEECCCCccccccccch
Confidence 99999998865 4433 3456777777777777752 221110000 001122223
Q ss_pred ccccc------ccccccccccCceecchHHHHHhhc---cccccceeEEecc--------CChhHHHHHHhc--ccCCcE
Q 048733 683 GSLRG------LQSLRGLLALPTIEADSQVLKELMM---LRQLNMLSIRRQN--------GNGRDLCALIAN--LENVET 743 (887)
Q Consensus 683 ~~L~~------L~~L~~~~~l~~~~~~~~~~~~l~~---l~~L~~L~l~~~~--------~~~~~l~~~l~~--~~~L~~ 743 (887)
+.+.+ |+.|+ ++.+.+....+..+.. ..++..|.+..+. .........+.. .++|+.
T Consensus 195 ~~~~~~~~~~~L~~L~----Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~ 270 (844)
T 3j0a_A 195 GKCMNPFRNMVLEILD----VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270 (844)
T ss_dssp CSSSCTTTTCCBSEEB----CSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCE
T ss_pred hhcCCccccCceeEEe----cCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccE
Confidence 33322 55554 4444333222222221 1233333332100 000000111222 257888
Q ss_pred EEEeecCCccccccCcccccccccceeEEeecc-C-CCChhhhcCCCcceeEEEecccCCc---CcCcCcccceeeeCcC
Q 048733 744 LGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-K-KLPDWILKLKNLIGSRLILSGLTED---PISWFPKLRKLVLLNF 818 (887)
Q Consensus 744 L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~-~lp~~~~~l~~L~~L~L~~~~l~~~---~~~~~~~L~~L~l~~~ 818 (887)
|++++|....... ..+...+ +|+.|+|++|. . ..|..+..+++|+.|+|++|.+... .+..+++|+.|++.++
T Consensus 271 L~Ls~n~l~~~~~-~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 271 LDLSHGFVFSLNS-RVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348 (844)
T ss_dssp EECTTCCCCEECS-CCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC
T ss_pred EECCCCcccccCh-hhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC
Confidence 8888775544321 2333344 88899998864 3 3466778888999999998887664 3446788888888887
Q ss_pred CCceeEEE-cCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 819 EAVKSVII-EKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 819 ~~l~~~~~-~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
. +..++. .+..+++|+.|++++|. ++.++. +++|+.|++++|.
T Consensus 349 ~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 349 H-IAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp C-CCCCCSSCSCSCCCCCEEEEETCC-SCCCSS----CCSCSEEEEESCC
T ss_pred C-CCccChhhhcCCCCCCEEECCCCC-CCcccC----CCCcchhccCCCC
Confidence 4 444433 35678888899888886 555443 7788888888776
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=5.4e-18 Score=183.14 Aligned_cols=239 Identities=18% Similarity=0.161 Sum_probs=164.0
Q ss_pred ceeEEEEecCCCCCCCcc-ccccccccceeecCCCceeeecCcccccc-chhhhcccccCeeeecccccccccccchhhh
Q 048733 598 KLMKVLDLEDSPINYLPE-GVGNLFNLHLLNARNTKILDLAHTFVSEL-PEEIRNLKKLRSLIVFHYKYITGSIIPTEAA 675 (887)
Q Consensus 598 ~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~Ldl~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 675 (887)
+.|++|+|++|.+..+|. .++++++|++|++++| .+..+ |..+.++++|++|++++| ..
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~Ls~n-----------~l 112 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN--------KISKISPGAFAPLVKLERLYLSKN-----------QL 112 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS--------CCCCBCTTTTTTCTTCCEEECCSS-----------CC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC--------cCCeeCHHHhcCCCCCCEEECCCC-----------cC
Confidence 467777888887776654 5777777777777765 35555 666777788888888776 34
Q ss_pred hhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCCh-hHHHHHHhcccCCcEEEEeecCCccc
Q 048733 676 AKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNG-RDLCALIANLENVETLGVLMKSKEEI 754 (887)
Q Consensus 676 ~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~l~~~l~~~~~L~~L~l~~~~~~~~ 754 (887)
..+|..+. ++|++|. ++.+.+.......+..+++|+.|+++.+.... ...+..+.++++|+.|++++|.....
T Consensus 113 ~~l~~~~~--~~L~~L~----l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 113 KELPEKMP--KTLQELR----VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SBCCSSCC--TTCCEEE----CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CccChhhc--ccccEEE----CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 45555544 5677776 55666665566667888888888887643321 12345667788888888887755432
Q ss_pred cccCcccccccccceeEEeecc-C-CCChhhhcCCCcceeEEEecccCCcC---cCcCcccceeeeCcCCCceeEEEcCC
Q 048733 755 LDLQSLSSPPQHLQYLSLRGNM-K-KLPDWILKLKNLIGSRLILSGLTEDP---ISWFPKLRKLVLLNFEAVKSVIIEKG 829 (887)
Q Consensus 755 ~~l~~l~~~~~~L~~L~L~~~~-~-~lp~~~~~l~~L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~ 829 (887)
+... . ++|+.|++++|. . ..|.++..+++|+.|+|++|.+...+ +..+++|+.|++.++. +..+|..+.
T Consensus 187 ---~~~~-~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~ 260 (330)
T 1xku_A 187 ---PQGL-P-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLA 260 (330)
T ss_dssp ---CSSC-C-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTT
T ss_pred ---Cccc-c-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhc
Confidence 1111 1 388888888864 3 34677888888888888888877644 3467788888888874 556776777
Q ss_pred CccCccEEEEccCCCCCcccc-ccc------cCCCCCEEEEEechh
Q 048733 830 AMPDIRELWIGPCPLLMEIPI-GID------HLRNLELLTFHDMSK 868 (887)
Q Consensus 830 ~lp~L~~L~l~~c~~l~~lp~-~~~------~l~~L~~L~l~~c~~ 868 (887)
.+++|+.|++++|+ ++.+|. .+. ..++|+.|++.+||.
T Consensus 261 ~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 261 DHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcc
Confidence 88888888888887 555543 221 347788888888884
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=2.4e-18 Score=185.97 Aligned_cols=281 Identities=16% Similarity=0.144 Sum_probs=175.0
Q ss_pred CceEEEEecCCCccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCC-ccccccccccceeecC
Q 048733 551 KTRRITIQRSIDDGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYL-PEGVGNLFNLHLLNAR 629 (887)
Q Consensus 551 ~~r~lsi~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~ 629 (887)
..+.+.+........+. .-.++++.|.+.++.. ..+.+..|.++++|++|+|++|.+..+ |..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPK-EISPDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCS-CCCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCC-CCCCCCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 35566655443322211 2246788888887765 344456788888899999998888866 6778888888888887
Q ss_pred CCceeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhccCC-ccccccccccccccccCceecch--HH
Q 048733 630 NTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRG-FGSLRGLQSLRGLLALPTIEADS--QV 706 (887)
Q Consensus 630 ~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~-i~~L~~L~~L~~~~~l~~~~~~~--~~ 706 (887)
+|. +..+|..+. ++|++|++++| ....+|.. ++.+++|++|. ++.+.+.. ..
T Consensus 111 ~n~--------l~~l~~~~~--~~L~~L~l~~n-----------~i~~~~~~~~~~l~~L~~L~----l~~n~l~~~~~~ 165 (332)
T 2ft3_A 111 KNH--------LVEIPPNLP--SSLVELRIHDN-----------RIRKVPKGVFSGLRNMNCIE----MGGNPLENSGFE 165 (332)
T ss_dssp SSC--------CCSCCSSCC--TTCCEEECCSS-----------CCCCCCSGGGSSCSSCCEEE----CCSCCCBGGGSC
T ss_pred CCc--------CCccCcccc--ccCCEEECCCC-----------ccCccCHhHhCCCccCCEEE----CCCCccccCCCC
Confidence 653 666666555 67778887776 33444443 66777777777 55555532 23
Q ss_pred HHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCC-Chhhh
Q 048733 707 LKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKL-PDWIL 784 (887)
Q Consensus 707 ~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~l-p~~~~ 784 (887)
+..+..+ +|+.|+++.+.... ++..+ .++|+.|++++|...... ...+...+ +|+.|+|++|. ..+ |.++.
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~--l~~~~--~~~L~~L~l~~n~i~~~~-~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTG--IPKDL--PETLNELHLDHNKIQAIE-LEDLLRYS-KLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSS--CCSSS--CSSCSCCBCCSSCCCCCC-TTSSTTCT-TCSCCBCCSSCCCCCCTTGGG
T ss_pred cccccCC-ccCEEECcCCCCCc--cCccc--cCCCCEEECCCCcCCccC-HHHhcCCC-CCCEEECCCCcCCcCChhHhh
Confidence 3344555 67777776532221 12111 257777777776544322 12344444 78888887763 333 34677
Q ss_pred cCCCcceeEEEecccCCcC--cCcCcccceeeeCcCCCceeEEEc-CC------CccCccEEEEccCCCC--Cccccccc
Q 048733 785 KLKNLIGSRLILSGLTEDP--ISWFPKLRKLVLLNFEAVKSVIIE-KG------AMPDIRELWIGPCPLL--MEIPIGID 853 (887)
Q Consensus 785 ~l~~L~~L~L~~~~l~~~~--~~~~~~L~~L~l~~~~~l~~~~~~-~~------~lp~L~~L~l~~c~~l--~~lp~~~~ 853 (887)
.+++|+.|+|++|.+...+ +..+++|+.|++.++. +..++.. +. .++.|+.|++.+|+.. ...|..+.
T Consensus 239 ~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 7788888888888776543 3366777788877754 4444321 11 2567888888888854 34566778
Q ss_pred cCCCCCEEEEEech
Q 048733 854 HLRNLELLTFHDMS 867 (887)
Q Consensus 854 ~l~~L~~L~l~~c~ 867 (887)
.+++|+.|++++|.
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 88888888888775
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=5.3e-18 Score=202.54 Aligned_cols=294 Identities=15% Similarity=0.058 Sum_probs=191.7
Q ss_pred CCCCceEEEEecCCCcccc--ccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCcc-ccccccccc
Q 048733 548 HCSKTRRITIQRSIDDGAL--ESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPE-GVGNLFNLH 624 (887)
Q Consensus 548 ~~~~~r~lsi~~~~~~~~~--~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~L~ 624 (887)
.+.++++|.+..+...... ....+++|++|.+.++.. ....+..|.++++|++|+|++|.+..+|. .++++++|+
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC--CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc--CccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 3467899998876543221 245678999999988765 34556778889999999999999998886 588999999
Q ss_pred eeecCCCceeeecCccccccc-hhhhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecc
Q 048733 625 LLNARNTKILDLAHTFVSELP-EEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEAD 703 (887)
Q Consensus 625 ~L~L~~~~~Ldl~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~ 703 (887)
+|++++|. +..+| ..+.++++|++|++++|. .....|..++++++|++|. ++.+.+.
T Consensus 101 ~L~L~~n~--------l~~~~~~~~~~l~~L~~L~Ls~n~----------l~~~~~~~~~~l~~L~~L~----L~~n~l~ 158 (680)
T 1ziw_A 101 ELHLMSNS--------IQKIKNNPFVKQKNLITLDLSHNG----------LSSTKLGTQVQLENLQELL----LSNNKIQ 158 (680)
T ss_dssp EEECCSSC--------CCCCCSCTTTTCTTCCEEECCSSC----------CSCCCCCSSSCCTTCCEEE----CCSSCCC
T ss_pred EEECCCCc--------cCccChhHccccCCCCEEECCCCc----------ccccCchhhcccccCCEEE----ccCCccc
Confidence 99888764 45554 346667777777777651 1112233455666666665 4444443
Q ss_pred hHHHHHhh--ccccccceeEEeccCC------------------------h---hHHHHHHhcccCCcEEEEeecCCccc
Q 048733 704 SQVLKELM--MLRQLNMLSIRRQNGN------------------------G---RDLCALIANLENVETLGVLMKSKEEI 754 (887)
Q Consensus 704 ~~~~~~l~--~l~~L~~L~l~~~~~~------------------------~---~~l~~~l~~~~~L~~L~l~~~~~~~~ 754 (887)
...+..+. .+++|+.|+++.+... . ..++..+ ..++|+.|++++|...+.
T Consensus 159 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~ 237 (680)
T 1ziw_A 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTT 237 (680)
T ss_dssp CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEE
T ss_pred ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCccccc
Confidence 33333332 3355555555542111 0 0111111 236788888887755443
Q ss_pred cccCcccccc-cccceeEEeecc-C-CCChhhhcCCCcceeEEEecccCCcC---cCcCcccceeeeCcCCCce-----e
Q 048733 755 LDLQSLSSPP-QHLQYLSLRGNM-K-KLPDWILKLKNLIGSRLILSGLTEDP---ISWFPKLRKLVLLNFEAVK-----S 823 (887)
Q Consensus 755 ~~l~~l~~~~-~~L~~L~L~~~~-~-~lp~~~~~l~~L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~-----~ 823 (887)
.. ..+.... ++|+.|+|++|. . ..|.++..+++|+.|+|++|.+...+ +..+++|+.|.+.++.... .
T Consensus 238 ~~-~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 238 SN-TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp CT-TTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred Ch-hHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence 21 2222222 259999999874 3 35677889999999999999887653 4578889999988653211 2
Q ss_pred EEE----cCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 824 VII----EKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 824 ~~~----~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
+|. .++.+++|+.|++++|......|..+.++++|++|++++|.
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 222 45678999999999998555556678889999999998875
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=3.9e-19 Score=190.10 Aligned_cols=250 Identities=17% Similarity=0.127 Sum_probs=148.0
Q ss_pred CceeEEEeecCCCCCccccccccCCCceeEEEEecC-CCCC-CCccccccccccceeecCCCceeeecCcccc-ccchhh
Q 048733 572 SKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLED-SPIN-YLPEGVGNLFNLHLLNARNTKILDLAHTFVS-ELPEEI 648 (887)
Q Consensus 572 ~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~-~~l~-~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~-~lp~~i 648 (887)
.+++.|.+.++.......++..+.++++|++|+|++ +.+. .+|..++++++|++|++++| .+. .+|..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n--------~l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT--------NVSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE--------CCEEECCGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC--------eeCCcCCHHH
Confidence 456666666655411113445566677777777774 5555 56666777777777666654 344 566666
Q ss_pred hcccccCeeeecccccccccccchhhhh-hccCCccccccccccccccccCceecchHHHHHhhccc-cccceeEEeccC
Q 048733 649 RNLKKLRSLIVFHYKYITGSIIPTEAAA-KIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLR-QLNMLSIRRQNG 726 (887)
Q Consensus 649 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~ 726 (887)
.++++|++|++++| ... .+|..++.+++|++|. ++.+.+.+..+..+..++ +|+.|+++.+..
T Consensus 122 ~~l~~L~~L~Ls~N-----------~l~~~~p~~~~~l~~L~~L~----L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 122 SQIKTLVTLDFSYN-----------ALSGTLPPSISSLPNLVGIT----FDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp GGCTTCCEEECCSS-----------EEESCCCGGGGGCTTCCEEE----CCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred hCCCCCCEEeCCCC-----------ccCCcCChHHhcCCCCCeEE----CcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 67777777777765 222 4555566677777766 555555545555566666 677777665322
Q ss_pred ChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcC--
Q 048733 727 NGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDP-- 803 (887)
Q Consensus 727 ~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~-- 803 (887)
. ..++..+..++ |+.|++++|...+... ..+...+ +|+.|+|++|. ...+..+..+++|++|+|++|.+....
T Consensus 187 ~-~~~~~~~~~l~-L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 187 T-GKIPPTFANLN-LAFVDLSRNMLEGDAS-VLFGSDK-NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp E-EECCGGGGGCC-CSEEECCSSEEEECCG-GGCCTTS-CCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG
T ss_pred e-ccCChHHhCCc-ccEEECcCCcccCcCC-HHHhcCC-CCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh
Confidence 1 12334455554 7777777664433211 2233333 77777777753 323333566777777777777766332
Q ss_pred -cCcCcccceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCCccc
Q 048733 804 -ISWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIP 849 (887)
Q Consensus 804 -~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp 849 (887)
+..+++|++|++.++.-...+|. .+.+++|+.|++.+|+.+...|
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred HHhcCcCCCEEECcCCcccccCCC-CccccccChHHhcCCCCccCCC
Confidence 33566777777777653334443 3678888888888887655544
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=4.2e-18 Score=183.22 Aligned_cols=103 Identities=18% Similarity=0.239 Sum_probs=81.6
Q ss_pred CCceEEEEecCCCc-cccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeec
Q 048733 550 SKTRRITIQRSIDD-GALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNA 628 (887)
Q Consensus 550 ~~~r~lsi~~~~~~-~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L 628 (887)
..++.|.+.++... .+.....+++|+.|.+.++... .++..+.++++|++|+|++|.+..+|..++++++|++|++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC---CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc---chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 46788888876543 3333446899999999998762 4567789999999999999999999999999999999999
Q ss_pred CCCceeeecCccccccchhhhc---------ccccCeeeeccc
Q 048733 629 RNTKILDLAHTFVSELPEEIRN---------LKKLRSLIVFHY 662 (887)
Q Consensus 629 ~~~~~Ldl~~~~l~~lp~~i~~---------l~~L~~L~l~~~ 662 (887)
++|. .+..+|..+.. +++|++|++++|
T Consensus 158 ~~n~-------~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 158 RACP-------ELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp EEET-------TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE
T ss_pred CCCC-------CccccChhHhhccchhhhccCCCCCEEECcCC
Confidence 8754 55677776654 777888877776
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=3e-18 Score=186.96 Aligned_cols=244 Identities=20% Similarity=0.159 Sum_probs=157.4
Q ss_pred CceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCC-ccccccccccceeecCCCceeeecCccccccchh-hh
Q 048733 572 SKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYL-PEGVGNLFNLHLLNARNTKILDLAHTFVSELPEE-IR 649 (887)
Q Consensus 572 ~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~-i~ 649 (887)
+++++|.+.++.. ..+....|.++++|++|+|++|.+..+ |..++++++|++|++++| .+..+|.. +.
T Consensus 52 ~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n--------~l~~~~~~~~~ 121 (353)
T 2z80_A 52 EAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN--------YLSNLSSSWFK 121 (353)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS--------CCSSCCHHHHT
T ss_pred ccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC--------cCCcCCHhHhC
Confidence 4778887777665 234444677788888888888877765 455777888887777664 46677765 66
Q ss_pred cccccCeeeecccccccccccchhhhhhccC--CccccccccccccccccCceecchHHHHHhhccccccceeEEeccCC
Q 048733 650 NLKKLRSLIVFHYKYITGSIIPTEAAAKIHR--GFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGN 727 (887)
Q Consensus 650 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~--~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 727 (887)
++++|++|++++| ....+|. .++.+++|++| +++++...
T Consensus 122 ~l~~L~~L~L~~n-----------~l~~l~~~~~~~~l~~L~~L----------------------------~l~~n~~~ 162 (353)
T 2z80_A 122 PLSSLTFLNLLGN-----------PYKTLGETSLFSHLTKLQIL----------------------------RVGNMDTF 162 (353)
T ss_dssp TCTTCSEEECTTC-----------CCSSSCSSCSCTTCTTCCEE----------------------------EEEESSSC
T ss_pred CCccCCEEECCCC-----------CCcccCchhhhccCCCCcEE----------------------------ECCCCccc
Confidence 7888888888776 2333443 34444555444 44432111
Q ss_pred hhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhh-hcCCCcceeEEEecccCCcCcC
Q 048733 728 GRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWI-LKLKNLIGSRLILSGLTEDPIS 805 (887)
Q Consensus 728 ~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~-~~l~~L~~L~L~~~~l~~~~~~ 805 (887)
....+..+.++++|+.|++++|...+... ..+...+ +|+.|+++++. ..+|..+ ..+++|+.|+|++|.+...+..
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEP-KSLKSIQ-NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCS-EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCH-HHHhccc-cCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence 11112345566777777777765443321 2333334 78888888764 4555443 3578888888888887765443
Q ss_pred ------cCcccceeeeCcCCC----ceeEEEcCCCccCccEEEEccCCCCCcccccc-ccCCCCCEEEEEech
Q 048733 806 ------WFPKLRKLVLLNFEA----VKSVIIEKGAMPDIRELWIGPCPLLMEIPIGI-DHLRNLELLTFHDMS 867 (887)
Q Consensus 806 ------~~~~L~~L~l~~~~~----l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~c~ 867 (887)
..+.++.+.+.++.- +..++..++.+++|+.|++++|. ++.+|..+ .++++|++|++++||
T Consensus 241 ~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 244566666665532 12344445678999999999996 66888875 899999999999987
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.72 E-value=1.3e-17 Score=194.02 Aligned_cols=111 Identities=18% Similarity=0.135 Sum_probs=86.5
Q ss_pred CCCceEEEEecCCCccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCC-ccccccccccceee
Q 048733 549 CSKTRRITIQRSIDDGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYL-PEGVGNLFNLHLLN 627 (887)
Q Consensus 549 ~~~~r~lsi~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~ 627 (887)
+...+++.+.++.....+... .++++.|.+.++.. ....+..|.++++|++|+|++|.++.+ |..++++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 344577888766543332222 38999999999876 345567889999999999999999977 67799999999999
Q ss_pred cCCCc-------------eeeecCccccccc--hhhhcccccCeeeeccc
Q 048733 628 ARNTK-------------ILDLAHTFVSELP--EEIRNLKKLRSLIVFHY 662 (887)
Q Consensus 628 L~~~~-------------~Ldl~~~~l~~lp--~~i~~l~~L~~L~l~~~ 662 (887)
|++|. +|++++|.+..+| ..+.++++|++|++++|
T Consensus 107 Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 107 VSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp CTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred CCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCC
Confidence 99986 8888888887654 67888888888888886
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=2.9e-17 Score=177.39 Aligned_cols=281 Identities=16% Similarity=0.104 Sum_probs=184.3
Q ss_pred CceEEEEecCCCccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCC-ccccccccccceeecC
Q 048733 551 KTRRITIQRSIDDGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYL-PEGVGNLFNLHLLNAR 629 (887)
Q Consensus 551 ~~r~lsi~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~ 629 (887)
..|.+.+........+ ..-.++++.|.+.++.. ..+.+..|.++++|++|+|++|.+..+ |..++++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp-~~~~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVP-KDLPPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCC-CSCCTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccC-ccCCCCCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 3455555543332221 12246889999888765 334455788999999999999999876 7889999999999888
Q ss_pred CCceeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhccC-CccccccccccccccccCceecch--HH
Q 048733 630 NTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHR-GFGSLRGLQSLRGLLALPTIEADS--QV 706 (887)
Q Consensus 630 ~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~-~i~~L~~L~~L~~~~~l~~~~~~~--~~ 706 (887)
+|. +..+|..+. ++|++|++++| ....++. .++++++|++|+ ++.+.... ..
T Consensus 109 ~n~--------l~~l~~~~~--~~L~~L~l~~n-----------~l~~~~~~~~~~l~~L~~L~----l~~n~l~~~~~~ 163 (330)
T 1xku_A 109 KNQ--------LKELPEKMP--KTLQELRVHEN-----------EITKVRKSVFNGLNQMIVVE----LGTNPLKSSGIE 163 (330)
T ss_dssp SSC--------CSBCCSSCC--TTCCEEECCSS-----------CCCBBCHHHHTTCTTCCEEE----CCSSCCCGGGBC
T ss_pred CCc--------CCccChhhc--ccccEEECCCC-----------cccccCHhHhcCCccccEEE----CCCCcCCccCcC
Confidence 764 666776554 67888888776 2333332 366777777777 55555532 33
Q ss_pred HHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CC-CChhhh
Q 048733 707 LKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KK-LPDWIL 784 (887)
Q Consensus 707 ~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~-lp~~~~ 784 (887)
+..+..+++|+.|+++.+.... ++..+ .++|+.|++++|...+.. ...+...+ +|+.|+|++|. .. .+.++.
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~--l~~~~--~~~L~~L~l~~n~l~~~~-~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITT--IPQGL--PPSLTELHLDGNKITKVD-AASLKGLN-NLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCS--CCSSC--CTTCSEEECTTSCCCEEC-TGGGTTCT-TCCEEECCSSCCCEECTTTGG
T ss_pred hhhccCCCCcCEEECCCCcccc--CCccc--cccCCEEECCCCcCCccC-HHHhcCCC-CCCEEECCCCcCceeChhhcc
Confidence 4556778888888877632221 12111 267888888877554432 12333344 78888888764 33 344677
Q ss_pred cCCCcceeEEEecccCCcC--cCcCcccceeeeCcCCCceeEEEc-C------CCccCccEEEEccCCCCC--ccccccc
Q 048733 785 KLKNLIGSRLILSGLTEDP--ISWFPKLRKLVLLNFEAVKSVIIE-K------GAMPDIRELWIGPCPLLM--EIPIGID 853 (887)
Q Consensus 785 ~l~~L~~L~L~~~~l~~~~--~~~~~~L~~L~l~~~~~l~~~~~~-~------~~lp~L~~L~l~~c~~l~--~lp~~~~ 853 (887)
.+++|+.|+|++|.+...+ +..+++|++|++.++. +..++.. + ...+.|+.|++++|+... ..|..+.
T Consensus 238 ~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 238 NTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp GSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 7888888888888877543 3467788888888764 4444322 1 135789999999998532 3466788
Q ss_pred cCCCCCEEEEEec
Q 048733 854 HLRNLELLTFHDM 866 (887)
Q Consensus 854 ~l~~L~~L~l~~c 866 (887)
.+++|+.+++++|
T Consensus 317 ~~~~l~~l~L~~N 329 (330)
T 1xku_A 317 CVYVRAAVQLGNY 329 (330)
T ss_dssp TCCCGGGEEC---
T ss_pred cccceeEEEeccc
Confidence 8999999999886
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=6.3e-17 Score=187.40 Aligned_cols=253 Identities=16% Similarity=0.124 Sum_probs=178.8
Q ss_pred ceEEEEecCCCccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCC
Q 048733 552 TRRITIQRSIDDGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNT 631 (887)
Q Consensus 552 ~r~lsi~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 631 (887)
.+.+.+.++.....+... .++|+.|.+.++... . ++. .+++|++|+|++|.++.+|. .+++|++|++++|
T Consensus 42 l~~L~ls~n~L~~lp~~l-~~~L~~L~L~~N~l~--~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLT--S-LPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCEEECCSSCCSCCCSCC-CTTCSEEEECSCCCS--C-CCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CcEEEecCCCcCccChhh-CCCCcEEEecCCCCC--C-CCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 456666655443222222 278999999887652 2 222 57889999999999988886 6788888888765
Q ss_pred ceeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhh
Q 048733 632 KILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELM 711 (887)
Q Consensus 632 ~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~ 711 (887)
.+..+|. .+++|++|++++| .+..+|.. +++|++|+ ++.+.+.... .
T Consensus 112 --------~l~~l~~---~l~~L~~L~L~~N-----------~l~~lp~~---l~~L~~L~----Ls~N~l~~l~----~ 158 (622)
T 3g06_A 112 --------PLTHLPA---LPSGLCKLWIFGN-----------QLTSLPVL---PPGLQELS----VSDNQLASLP----A 158 (622)
T ss_dssp --------CCCCCCC---CCTTCCEEECCSS-----------CCSCCCCC---CTTCCEEE----CCSSCCSCCC----C
T ss_pred --------cCCCCCC---CCCCcCEEECCCC-----------CCCcCCCC---CCCCCEEE----CcCCcCCCcC----C
Confidence 4666766 5677888888877 34455553 36677776 5555543211 1
Q ss_pred ccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCCcc
Q 048733 712 MLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLI 790 (887)
Q Consensus 712 ~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~ 790 (887)
.+.+|+.|+++++.... ++ ..+++|+.|++++|.... +...+++|+.|++++|. ..+|. .+++|+
T Consensus 159 ~~~~L~~L~L~~N~l~~--l~---~~~~~L~~L~Ls~N~l~~------l~~~~~~L~~L~L~~N~l~~l~~---~~~~L~ 224 (622)
T 3g06_A 159 LPSELCKLWAYNNQLTS--LP---MLPSGLQELSVSDNQLAS------LPTLPSELYKLWAYNNRLTSLPA---LPSGLK 224 (622)
T ss_dssp CCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC------CCCCCTTCCEEECCSSCCSSCCC---CCTTCC
T ss_pred ccCCCCEEECCCCCCCC--Cc---ccCCCCcEEECCCCCCCC------CCCccchhhEEECcCCcccccCC---CCCCCC
Confidence 34677788777643322 22 456889999998876543 22223489999998874 56774 358899
Q ss_pred eeEEEecccCCcCcCcCcccceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 791 GSRLILSGLTEDPISWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 791 ~L~L~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
.|+|++|.++..+ ..+++|+.|+++++. +..+|. .+++|+.|++++|. ++.+|..+.++++|+.|++++|+
T Consensus 225 ~L~Ls~N~L~~lp-~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 225 ELIVSGNRLTSLP-VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EEECCSSCCSCCC-CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred EEEccCCccCcCC-CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 9999999988766 668899999999874 566654 67899999999886 66889999999999999999987
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.70 E-value=1.1e-17 Score=180.86 Aligned_cols=259 Identities=17% Similarity=0.167 Sum_probs=195.0
Q ss_pred ceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCc-cccccccccceeecCCCceeeecCcccccc-chhhhc
Q 048733 573 KVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLP-EGVGNLFNLHLLNARNTKILDLAHTFVSEL-PEEIRN 650 (887)
Q Consensus 573 ~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~l-p~~i~~ 650 (887)
+++.+.+.++.. ..+ +..+ .+.|++|+|++|.+..++ ..+.++++|++|++++|. +..+ |..+.+
T Consensus 34 ~l~~l~~~~~~l--~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~ 100 (332)
T 2ft3_A 34 HLRVVQCSDLGL--KAV-PKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK--------ISKIHEKAFSP 100 (332)
T ss_dssp ETTEEECCSSCC--SSC-CSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--------CCEECGGGSTT
T ss_pred cCCEEECCCCCc--ccc-CCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc--------cCccCHhHhhC
Confidence 678888777654 122 2222 368999999999999774 579999999999998764 6665 678899
Q ss_pred ccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCCh-h
Q 048733 651 LKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNG-R 729 (887)
Q Consensus 651 l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~ 729 (887)
+++|++|++++| ....+|..+. ++|++|. ++.+.+.......+..+++|+.|+++++.... .
T Consensus 101 l~~L~~L~L~~n-----------~l~~l~~~~~--~~L~~L~----l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 163 (332)
T 2ft3_A 101 LRKLQKLYISKN-----------HLVEIPPNLP--SSLVELR----IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163 (332)
T ss_dssp CTTCCEEECCSS-----------CCCSCCSSCC--TTCCEEE----CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred cCCCCEEECCCC-----------cCCccCcccc--ccCCEEE----CCCCccCccCHhHhCCCccCCEEECCCCccccCC
Confidence 999999999998 4556776665 7899888 76777665555567899999999998754332 1
Q ss_pred HHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCC-ChhhhcCCCcceeEEEecccCCcC---c
Q 048733 730 DLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKL-PDWILKLKNLIGSRLILSGLTEDP---I 804 (887)
Q Consensus 730 ~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~l-p~~~~~l~~L~~L~L~~~~l~~~~---~ 804 (887)
..+..+..+ +|+.|++++|..... +... +++|+.|++++|. ..+ |..+..+++|+.|+|++|.+...+ +
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~l---~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTGI---PKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSSC---CSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred CCcccccCC-ccCEEECcCCCCCcc---Cccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh
Confidence 223445555 899999998865442 1111 1389999999974 444 467889999999999999988765 4
Q ss_pred CcCcccceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCCcccc-cccc------CCCCCEEEEEechhh
Q 048733 805 SWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPI-GIDH------LRNLELLTFHDMSKQ 869 (887)
Q Consensus 805 ~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~-~~~~------l~~L~~L~l~~c~~~ 869 (887)
..+++|+.|++.++. +..+|..+..+++|+.|++++|+ ++.+|. .+.. .++|+.|++.+||..
T Consensus 238 ~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 238 SFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCccc
Confidence 478899999999874 66788778889999999999997 555543 3322 578999999999854
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=1e-16 Score=180.08 Aligned_cols=276 Identities=20% Similarity=0.209 Sum_probs=157.4
Q ss_pred CCCceEEEEecCCCccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeec
Q 048733 549 CSKTRRITIQRSIDDGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNA 628 (887)
Q Consensus 549 ~~~~r~lsi~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L 628 (887)
+..++++.+..+....... ..++|+.|.+.++.... ++. -.++|++|++++|.+..+| .++++++|++|++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~---l~~---~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKA---LSD---LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV 160 (454)
T ss_dssp CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSC---CCS---CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCc---ccC---CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEEC
Confidence 4567888887665433222 34788888887765421 111 1267888899888888888 5888888999888
Q ss_pred CCCc------------eeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccc
Q 048733 629 RNTK------------ILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLA 696 (887)
Q Consensus 629 ~~~~------------~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~ 696 (887)
++|. +|++++|.+..+| .+.++++|++|++++|. ...+|... ++|++|+
T Consensus 161 ~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-----------l~~l~~~~---~~L~~L~---- 221 (454)
T 1jl5_A 161 DNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-----------LKKLPDLP---LSLESIV---- 221 (454)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-----------CSSCCCCC---TTCCEEE----
T ss_pred CCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-----------CCcCCCCc---CcccEEE----
Confidence 8876 7888888888888 68899999999999872 22222211 2344444
Q ss_pred cCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccc--------------cCcccc
Q 048733 697 LPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILD--------------LQSLSS 762 (887)
Q Consensus 697 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~--------------l~~l~~ 762 (887)
++.+.+.. .+ .++.+++|+.|+++++.... ++. ..++|+.|++++|...+... +..+..
T Consensus 222 l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~--l~~---~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~ 294 (454)
T 1jl5_A 222 AGNNILEE-LP-ELQNLPFLTTIYADNNLLKT--LPD---LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE 294 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS--CCS---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESC
T ss_pred CcCCcCCc-cc-ccCCCCCCCEEECCCCcCCc--ccc---cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccC
Confidence 33333321 11 24455555555554422111 110 12344444444443221000 011111
Q ss_pred cccccceeEEeecc-CCCChhhhcC-CCcceeEEEecccCCcCcCcCcccceeeeCcCCCceeEEEcCCCccCccEEEEc
Q 048733 763 PPQHLQYLSLRGNM-KKLPDWILKL-KNLIGSRLILSGLTEDPISWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIG 840 (887)
Q Consensus 763 ~~~~L~~L~L~~~~-~~lp~~~~~l-~~L~~L~L~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~ 840 (887)
.+++|+.|++++|. ..++ .+ ++|+.|+|++|.+...+. .+++|+.|++.++. +..+|. .+++|+.|+++
T Consensus 295 ~~~~L~~L~l~~N~l~~i~----~~~~~L~~L~Ls~N~l~~lp~-~~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~ 365 (454)
T 1jl5_A 295 LPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELPA-LPPRLERLIASFNH-LAEVPE---LPQNLKQLHVE 365 (454)
T ss_dssp CCTTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECC
T ss_pred cCCcCCEEECcCCcCCccc----CCcCcCCEEECCCCccccccc-cCCcCCEEECCCCc-cccccc---hhhhccEEECC
Confidence 12356666665542 2222 22 578888888888876443 47889999998874 555554 57899999999
Q ss_pred cCCCCC--ccccccccC-------------CCCCEEEEEechh
Q 048733 841 PCPLLM--EIPIGIDHL-------------RNLELLTFHDMSK 868 (887)
Q Consensus 841 ~c~~l~--~lp~~~~~l-------------~~L~~L~l~~c~~ 868 (887)
+|+... .+|..+.++ ++|+.|++++|+-
T Consensus 366 ~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 366 YNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred CCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 988655 577777777 8899999988873
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.68 E-value=9.8e-17 Score=191.56 Aligned_cols=101 Identities=17% Similarity=-0.022 Sum_probs=42.6
Q ss_pred ccceeEEeecc-C-CCChhhhcCCCcceeEEEecccCCc--CcCc-----CcccceeeeCcCCCceeEEEcCCCccCccE
Q 048733 766 HLQYLSLRGNM-K-KLPDWILKLKNLIGSRLILSGLTED--PISW-----FPKLRKLVLLNFEAVKSVIIEKGAMPDIRE 836 (887)
Q Consensus 766 ~L~~L~L~~~~-~-~lp~~~~~l~~L~~L~L~~~~l~~~--~~~~-----~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~ 836 (887)
+|+.|+++++. . ..|.++..+++|+.|+|++|.+... +... .++|+.|++.++.-....+..+..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 55666665542 2 2334455555555555555432111 1000 123444444443211111222344555555
Q ss_pred EEEccCCCCCccc-cccccCCCCCEEEEEec
Q 048733 837 LWIGPCPLLMEIP-IGIDHLRNLELLTFHDM 866 (887)
Q Consensus 837 L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c 866 (887)
|++++|.....+| ..+.++++|++|++++|
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCC
Confidence 5555554333333 23444455555555444
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=5.2e-17 Score=173.39 Aligned_cols=219 Identities=18% Similarity=0.194 Sum_probs=116.6
Q ss_pred ceeEEEEecCCCCCCCccc-cccccccceeecCCCceeeecCccccc---cchhhhcccccCeeeecccccccccccchh
Q 048733 598 KLMKVLDLEDSPINYLPEG-VGNLFNLHLLNARNTKILDLAHTFVSE---LPEEIRNLKKLRSLIVFHYKYITGSIIPTE 673 (887)
Q Consensus 598 ~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~Ldl~~~~l~~---lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 673 (887)
++|++|+|++|.+..+|.. +.++++|++|++++|. +.. .|..+..+++|++|++++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~~~~~~L~~L~Ls~n----------- 88 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG--------LSFKGCCSQSDFGTTSLKYLDLSFN----------- 88 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--------CCEEEEEEHHHHSCSCCCEEECCSC-----------
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc--------cCcccCcccccccccccCEEECCCC-----------
Confidence 4577777777777777654 5677777777776653 332 2556666777777777776
Q ss_pred hhhhccCCccccccccccccccccCceecchHHH-HHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCc
Q 048733 674 AAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVL-KELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKE 752 (887)
Q Consensus 674 ~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 752 (887)
....+|..+..+++|++|. ++.+.+..... ..+..++ +|+.|++++|...
T Consensus 89 ~i~~l~~~~~~l~~L~~L~----l~~n~l~~~~~~~~~~~l~-------------------------~L~~L~l~~n~l~ 139 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLD----FQHSNLKQMSEFSVFLSLR-------------------------NLIYLDISHTHTR 139 (306)
T ss_dssp SEEEEEEEEETCTTCCEEE----CTTSEEESSTTTTTTTTCT-------------------------TCCEEECTTSCCE
T ss_pred ccccChhhcCCCCCCCEEE----CCCCcccccccchhhhhcc-------------------------CCCEEECCCCcCC
Confidence 3344555555666666665 33333321111 2233334 4444444433222
Q ss_pred cccccCcccccccccceeEEeecc-C--CCChhhhcCCCcceeEEEecccCCcC---cCcCcccceeeeCcCCCceeEEE
Q 048733 753 EILDLQSLSSPPQHLQYLSLRGNM-K--KLPDWILKLKNLIGSRLILSGLTEDP---ISWFPKLRKLVLLNFEAVKSVII 826 (887)
Q Consensus 753 ~~~~l~~l~~~~~~L~~L~L~~~~-~--~lp~~~~~l~~L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~~~ 826 (887)
.... ..+...+ +|+.|++++|. . .+|.++..+++|+.|+|++|.+...+ +..+++|+.|++.++. +..++.
T Consensus 140 ~~~~-~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 216 (306)
T 2z66_A 140 VAFN-GIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDT 216 (306)
T ss_dssp ECST-TTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCS
T ss_pred ccch-hhcccCc-CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccCh
Confidence 1110 1122222 55555555442 1 24555555555555555555554432 2244555555555543 222222
Q ss_pred -cCCCccCccEEEEccCCCCCccccccccCC-CCCEEEEEech
Q 048733 827 -EKGAMPDIRELWIGPCPLLMEIPIGIDHLR-NLELLTFHDMS 867 (887)
Q Consensus 827 -~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~c~ 867 (887)
.+..+++|+.|++++|......|..+..++ +|+.|++++||
T Consensus 217 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 345567777777777765555566666664 77777777766
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=1.5e-16 Score=179.71 Aligned_cols=218 Identities=20% Similarity=0.220 Sum_probs=135.7
Q ss_pred ceeEEEEecCCCCCCC-ccccccccccceeecCCCceeeecCccccccc-hhhhcccccCeeeecccccccccccchhhh
Q 048733 598 KLMKVLDLEDSPINYL-PEGVGNLFNLHLLNARNTKILDLAHTFVSELP-EEIRNLKKLRSLIVFHYKYITGSIIPTEAA 675 (887)
Q Consensus 598 ~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 675 (887)
++|++|+|++|.+..+ |..+.++++|++|+|++|. +..++ ..+.++++|++|++++| ..
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~--------i~~~~~~~~~~l~~L~~L~L~~n-----------~l 135 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS--------IRQIEVGAFNGLASLNTLELFDN-----------WL 135 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--------CCEECTTTTTTCTTCCEEECCSS-----------CC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc--------cCCcChhhccCcccCCEEECCCC-----------cC
Confidence 5789999999999866 5678899999998888764 66554 56778999999999987 34
Q ss_pred hhccCC-ccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccc
Q 048733 676 AKIHRG-FGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEI 754 (887)
Q Consensus 676 ~~~p~~-i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 754 (887)
..+|.+ ++.+++|++|. ++.+.+.......+.+++ +|+.|+++.+...+.
T Consensus 136 ~~~~~~~~~~l~~L~~L~----L~~N~l~~~~~~~~~~l~-------------------------~L~~L~l~~~~~l~~ 186 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELW----LRNNPIESIPSYAFNRVP-------------------------SLMRLDLGELKKLEY 186 (452)
T ss_dssp SBCCTTTSSSCTTCCEEE----CCSCCCCEECTTTTTTCT-------------------------TCCEEECCCCTTCCE
T ss_pred CccChhhhcccCCCCEEE----CCCCCcceeCHhHHhcCC-------------------------cccEEeCCCCCCccc
Confidence 455543 66777777777 555544332223344444 455555444332222
Q ss_pred cccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcC---cCcCcccceeeeCcCCCceeE-EEcCC
Q 048733 755 LDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDP---ISWFPKLRKLVLLNFEAVKSV-IIEKG 829 (887)
Q Consensus 755 ~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~-~~~~~ 829 (887)
.....+...+ +|+.|+|++|. ..+| .+..+++|+.|+|++|.+...+ +..+++|+.|.+.++. +..+ +..+.
T Consensus 187 i~~~~~~~l~-~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 263 (452)
T 3zyi_A 187 ISEGAFEGLF-NLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFD 263 (452)
T ss_dssp ECTTTTTTCT-TCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTT
T ss_pred cChhhccCCC-CCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHhc
Confidence 2212222233 56666666543 3444 3555666666666666655432 3355666666666654 3333 33356
Q ss_pred CccCccEEEEccCCCCCcccc-ccccCCCCCEEEEEech
Q 048733 830 AMPDIRELWIGPCPLLMEIPI-GIDHLRNLELLTFHDMS 867 (887)
Q Consensus 830 ~lp~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~ 867 (887)
.+++|+.|+|++|. ++.+|. .+..+++|++|++++||
T Consensus 264 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 264 GLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 67888888888776 445443 45678888888888877
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=178.33 Aligned_cols=218 Identities=17% Similarity=0.216 Sum_probs=135.5
Q ss_pred ceeEEEEecCCCCCCCc-cccccccccceeecCCCceeeecCccccccc-hhhhcccccCeeeecccccccccccchhhh
Q 048733 598 KLMKVLDLEDSPINYLP-EGVGNLFNLHLLNARNTKILDLAHTFVSELP-EEIRNLKKLRSLIVFHYKYITGSIIPTEAA 675 (887)
Q Consensus 598 ~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 675 (887)
+++++|+|++|.+..++ ..+.++++|++|+|++|. +..++ ..+.++++|++|++++| ..
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~--------i~~i~~~~~~~l~~L~~L~L~~n-----------~l 124 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH--------IRTIEIGAFNGLANLNTLELFDN-----------RL 124 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC--------CCEECGGGGTTCSSCCEEECCSS-----------CC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc--------CCccChhhccCCccCCEEECCCC-----------cC
Confidence 57889999999998765 678899999999888764 66665 46778999999999987 34
Q ss_pred hhccC-CccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccc
Q 048733 676 AKIHR-GFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEI 754 (887)
Q Consensus 676 ~~~p~-~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 754 (887)
..+|. .+..+++|++|. ++.+.+.......+..+++ |+.|+++.+.....
T Consensus 125 ~~~~~~~~~~l~~L~~L~----L~~N~i~~~~~~~~~~l~~-------------------------L~~L~l~~~~~l~~ 175 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELW----LRNNPIESIPSYAFNRIPS-------------------------LRRLDLGELKRLSY 175 (440)
T ss_dssp SSCCTTTSCSCSSCCEEE----CCSCCCCEECTTTTTTCTT-------------------------CCEEECCCCTTCCE
T ss_pred CeeCHhHhhccccCceee----CCCCcccccCHHHhhhCcc-------------------------cCEeCCCCCCCcce
Confidence 45554 367777777777 5555443333333444444 44444444322222
Q ss_pred cccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcC---cCcCcccceeeeCcCCCceeE-EEcCC
Q 048733 755 LDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDP---ISWFPKLRKLVLLNFEAVKSV-IIEKG 829 (887)
Q Consensus 755 ~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~-~~~~~ 829 (887)
.....+...+ +|+.|+|++|. ..+| .+..+++|+.|+|++|.+...+ +..+++|+.|.+.++. +..+ +..+.
T Consensus 176 i~~~~~~~l~-~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 252 (440)
T 3zyj_A 176 ISEGAFEGLS-NLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFD 252 (440)
T ss_dssp ECTTTTTTCS-SCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSST
T ss_pred eCcchhhccc-ccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhc
Confidence 2112222233 56666666542 4455 3455666666666666655432 3355566666666653 3333 22355
Q ss_pred CccCccEEEEccCCCCCcccc-ccccCCCCCEEEEEech
Q 048733 830 AMPDIRELWIGPCPLLMEIPI-GIDHLRNLELLTFHDMS 867 (887)
Q Consensus 830 ~lp~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~ 867 (887)
.+++|+.|+|++|. ++.+|. .+..+++|+.|++++||
T Consensus 253 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 253 NLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 67788888888776 444443 45677888888888777
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=9.3e-18 Score=190.54 Aligned_cols=307 Identities=15% Similarity=0.136 Sum_probs=166.2
Q ss_pred CCceEEEEecCCCcc-cc-c-cCCCCceeEEEeecCCCCCc--cccccccCCCceeEEEEecCCCCCC-Cccccc-ccc-
Q 048733 550 SKTRRITIQRSIDDG-AL-E-SIKDSKVRSVILFNVDKLPD--SFVKSCIANFKLMKVLDLEDSPINY-LPEGVG-NLF- 621 (887)
Q Consensus 550 ~~~r~lsi~~~~~~~-~~-~-~~~~~~lrsL~~~~~~~~~~--~~~~~~~~~~~~Lr~L~L~~~~l~~-lp~~i~-~L~- 621 (887)
..++++.+.++.... .. . ...++++++|.+.++..... ..++..+..+++|++|+|++|.+.. .+..+. .+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 346777777554321 11 1 34577899999988875211 1344567778889999999888763 222332 344
Q ss_pred ---ccceeecCCCc--------------------eeeecCcccccc-chhhh-----cccccCeeeecccccccccccch
Q 048733 622 ---NLHLLNARNTK--------------------ILDLAHTFVSEL-PEEIR-----NLKKLRSLIVFHYKYITGSIIPT 672 (887)
Q Consensus 622 ---~L~~L~L~~~~--------------------~Ldl~~~~l~~l-p~~i~-----~l~~L~~L~l~~~~~~~~~~~~~ 672 (887)
+|++|++++|. +|++++|.+... +..+. ..++|++|++++|. +++
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~----- 156 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSA----- 156 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBG-----
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCH-----
Confidence 58888888764 444444433211 11111 12334444444431 111
Q ss_pred hhhhhccCCccccccccccccccccCceecchHHHHHhh-----ccccccceeEEeccCCh---hHHHHHHhcccCCcEE
Q 048733 673 EAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELM-----MLRQLNMLSIRRQNGNG---RDLCALIANLENVETL 744 (887)
Q Consensus 673 ~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~---~~l~~~l~~~~~L~~L 744 (887)
.....++..+..+++|++|+ ++.+.+....+..+. .+++|+.|+++++.... ..++..+..+++|++|
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~----L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 232 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELT----VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEE----CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHhhCCCCCEEE----CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEE
Confidence 01122344455566777776 555555444333333 24577777776533222 2356666677777777
Q ss_pred EEeecCCcccc--cc-CcccccccccceeEEeecc-CC-----CChhhhcCCCcceeEEEecccCCcCcC----------
Q 048733 745 GVLMKSKEEIL--DL-QSLSSPPQHLQYLSLRGNM-KK-----LPDWILKLKNLIGSRLILSGLTEDPIS---------- 805 (887)
Q Consensus 745 ~l~~~~~~~~~--~l-~~l~~~~~~L~~L~L~~~~-~~-----lp~~~~~l~~L~~L~L~~~~l~~~~~~---------- 805 (887)
++++|...... .+ ..+....++|+.|++++|. .. +|..+..+++|+.|+|++|.+......
T Consensus 233 ~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 312 (461)
T 1z7x_W 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG 312 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTT
T ss_pred eccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCC
Confidence 77776433211 00 1111112367777776652 21 455555566666666666655322111
Q ss_pred --------------------------cCcccceeeeCcCCCceeE-EEcC-----CCccCccEEEEccCCCCC----ccc
Q 048733 806 --------------------------WFPKLRKLVLLNFEAVKSV-IIEK-----GAMPDIRELWIGPCPLLM----EIP 849 (887)
Q Consensus 806 --------------------------~~~~L~~L~l~~~~~l~~~-~~~~-----~~lp~L~~L~l~~c~~l~----~lp 849 (887)
.+++|++|++.++. +... +..+ ...++|+.|++++|.... .+|
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 23455555555542 2211 0001 125689999998887432 678
Q ss_pred cccccCCCCCEEEEEech
Q 048733 850 IGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 850 ~~~~~l~~L~~L~l~~c~ 867 (887)
..+..+++|++|++++|+
T Consensus 392 ~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHCCCCCEEECCSSS
T ss_pred HHHHhCCCccEEECCCCC
Confidence 888889999999999886
No 57
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=1.5e-14 Score=157.54 Aligned_cols=308 Identities=11% Similarity=0.125 Sum_probs=181.3
Q ss_pred ccCccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCC------CHHHHH
Q 048733 169 EDDEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEY------NKNDLL 242 (887)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~------~~~~~~ 242 (887)
.+..|+||+.++++|.+++..+ +++.|+|++|+|||||++++++.. . .+|+++.... +...++
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHH
Confidence 4567999999999999998763 589999999999999999999852 1 6777764332 455666
Q ss_pred HHHHHHHhhc---c-CCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCC-CceEEEEeccCChh--------HH
Q 048733 243 RTIIKEFHRL---S-KHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKD-KSYMVVLDDVWKID--------FW 309 (887)
Q Consensus 243 ~~i~~~l~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~~~~--------~~ 309 (887)
..+...+... . ..... .. ..+ ...+ .......++.+.+.+..+. ++.+|||||++..+ .+
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~-~~--~~~--~~~~--~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 151 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKIS-LN--LKF--LTLE--PRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKEL 151 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCC-CC--CGG--GTSC--GGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHH
T ss_pred HHHHHHHHHHHhHhhhceeE-EE--ecc--eeec--cccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhH
Confidence 6665544320 0 00000 00 000 0000 0123456677777766643 38999999996543 22
Q ss_pred HHHHHhcCCCCCCcEEEEEccchhH-Hhh---hc----cC-CCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHH
Q 048733 310 RDVEHALLDNKKCSRIIVTTRHMNV-AKF---CK----LS-SSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKE 380 (887)
Q Consensus 310 ~~l~~~l~~~~~gs~iivTtR~~~v-~~~---~~----~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~ 380 (887)
......+.....+.++|+|++.... ... .. .. .....+.+.||+.+|+.+++.+..-.... . ...+
T Consensus 152 ~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~--~---~~~~ 226 (350)
T 2qen_A 152 LALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL--D---VPEN 226 (350)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC--C---CCHH
T ss_pred HHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC--C---CCHH
Confidence 2222222222247789999887643 221 01 00 11247999999999999999875422110 1 1145
Q ss_pred HHHHHHHHhCCCchHHHHHhhhhcCCCCCHHHHH-HHHHHhccccCCCCCccchHHHHhhcccCC---ChhhHHHHhhhc
Q 048733 381 LSQDILAKCGGLPLAIVAVGGLLSTKNRIVSEWK-KLFDRLGSMLGSDPHLKDCNRVLSEGYYDL---PHHLKSCLLYFG 456 (887)
Q Consensus 381 ~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~i~~~l~~sy~~L---p~~~k~cf~~~s 456 (887)
....|++.|+|+|+++..++..+..... ...+. ...+. +...+.-.+..+ ++..+..+..+|
T Consensus 227 ~~~~i~~~tgG~P~~l~~~~~~~~~~~~-~~~~~~~~~~~-------------~~~~~~~~l~~l~~~~~~~~~~l~~la 292 (350)
T 2qen_A 227 EIEEAVELLDGIPGWLVVFGVEYLRNGD-FGRAMKRTLEV-------------AKGLIMGELEELRRRSPRYVDILRAIA 292 (350)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-HHHHHHHHHHH-------------HHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhcccc-HhHHHHHHHHH-------------HHHHHHHHHHHHHhCChhHHHHHHHHH
Confidence 6789999999999999998875432111 22221 11111 111111111222 788899999998
Q ss_pred ccCCCcccChhHHHHHHHHcCccccCCCCCHHHHHHHHHHHHhhcCCeeeeecCCCCceeEEEeCHHHHHHHH
Q 048733 457 LFPESCKINRGRLIRLWIAEGLVQYSKRFTSEQVAAEYLDELIDRSLVQVSNREIPGRAIICHVHDLMHEIII 529 (887)
Q Consensus 457 ~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~Hdlv~~~~~ 529 (887)
. . .++...+.....+. . ++.+ ......+++.|.+.+++.... + .+...|++++++.+
T Consensus 293 ~-g---~~~~~~l~~~~~~~-~----~~~~-~~~~~~~l~~L~~~gli~~~~----~--~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 293 L-G---YNRWSLIRDYLAVK-G----TKIP-EPRLYALLENLKKMNWIVEED----N--TYKIADPVVATVLR 349 (350)
T ss_dssp T-T---CCSHHHHHHHHHHT-T----CCCC-HHHHHHHHHHHHHTTSEEEET----T--EEEESSHHHHHHHT
T ss_pred h-C---CCCHHHHHHHHHHH-h----CCCC-HHHHHHHHHHHHhCCCEEecC----C--EEEEecHHHHHHHc
Confidence 7 2 23434444433221 1 0112 355778999999999998652 2 23456889988764
No 58
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.63 E-value=2.3e-14 Score=159.81 Aligned_cols=302 Identities=14% Similarity=0.079 Sum_probs=183.3
Q ss_pred cCccccchhcHHHHHHHH-hcC--C--CCcEEEEE--EccCCCCHHHHHHHHhcccCcc---CCCc-eeEEEEeCCCCCH
Q 048733 170 DDEVVGIESIKDKLIDLM-LNG--R--SKRSVVAV--VGEGGLGKTTLAGKLFNNEGLK---THFS-CRAWVTVGKEYNK 238 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L-~~~--~--~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~v~~~~~~ 238 (887)
+..++||+.++++|.+++ ... . .....+.| +|++|+||||||+.+++..... ..|. .++|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 431 1 23456667 9999999999999999852211 0122 3568887677788
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhC--CCceEEEEeccCCh--------hH
Q 048733 239 NDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLK--DKSYMVVLDDVWKI--------DF 308 (887)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~--------~~ 308 (887)
..++..++.+++.... ....+...+...+.+.+. +++++|||||++.. +.
T Consensus 101 ~~~~~~l~~~l~~~~~--------------------~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~ 160 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQ--------------------VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAED 160 (412)
T ss_dssp HHHHHHHHHHHTCCCC--------------------CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHH
T ss_pred HHHHHHHHHHhCCCCC--------------------CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHH
Confidence 8999999988854211 011234566677777664 67999999999753 23
Q ss_pred HHHHHHhcCCC---C--CCcEEEEEccchhHHhhhc-------cCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCCh
Q 048733 309 WRDVEHALLDN---K--KCSRIIVTTRHMNVAKFCK-------LSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPS 376 (887)
Q Consensus 309 ~~~l~~~l~~~---~--~gs~iivTtR~~~v~~~~~-------~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~ 376 (887)
+..+...+... + ....||+||+...+..... ... ...+.+++|+.++++++|...+.....+..
T Consensus 161 l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~-~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~--- 236 (412)
T 1w5s_A 161 LYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQI-GFKLHLPAYKSRELYTILEQRAELGLRDTV--- 236 (412)
T ss_dssp HHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTC-SEEEECCCCCHHHHHHHHHHHHHHHBCTTS---
T ss_pred HHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhc-CCeeeeCCCCHHHHHHHHHHHHHhcCCCCC---
Confidence 33333333211 2 3456788887655332111 111 134999999999999999765421100001
Q ss_pred HHHHHHHHHHHHhC------CCchHHHHHhhhhc------CC-CCCHHHHHHHHHHhccccCCCCCccchHHHHhhcccC
Q 048733 377 ELKELSQDILAKCG------GLPLAIVAVGGLLS------TK-NRIVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYYD 443 (887)
Q Consensus 377 ~~~~~~~~I~~~c~------G~PLai~~~~~~l~------~~-~~~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~ 443 (887)
-..+....|++.|+ |+|..+..+..... .. .-+...+......... ...+.-++..
T Consensus 237 ~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-----------~~~~~~~l~~ 305 (412)
T 1w5s_A 237 WEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-----------ASIQTHELEA 305 (412)
T ss_dssp CCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-----------------CCSSSS
T ss_pred CChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-----------cchHHHHHHc
Confidence 12467788999999 99976655543221 11 1123444443332210 2334556788
Q ss_pred CChhhHHHHhhhcccC--CCcccChhHHHHHHHHcC--ccccCCCCCHHHHHHHHHHHHhhcCCeeeee
Q 048733 444 LPHHLKSCLLYFGLFP--ESCKINRGRLIRLWIAEG--LVQYSKRFTSEQVAAEYLDELIDRSLVQVSN 508 (887)
Q Consensus 444 Lp~~~k~cf~~~s~fp--~~~~i~~~~li~~w~a~g--~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 508 (887)
||++.+.++..++.+. .+..+....+...+.... ... . ..........+++.|...+++....
T Consensus 306 l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 306 LSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYN-V-KPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSC-C-CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcC-C-CCCCHHHHHHHHHHHHhCCCEEeec
Confidence 9999999999998754 233555555555442110 000 0 1112345678899999999998764
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.63 E-value=4.7e-16 Score=184.27 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=92.0
Q ss_pred CCCCceEEEEecCCCcccc--ccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCcc-ccccccccc
Q 048733 548 HCSKTRRITIQRSIDDGAL--ESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPE-GVGNLFNLH 624 (887)
Q Consensus 548 ~~~~~r~lsi~~~~~~~~~--~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~L~ 624 (887)
.+..+++|.+..+...... ....+++|+.|.+.++.. ..+.+..|.++++|++|+|++|.++.+|. .+.+|++|+
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 4567899999877654332 346789999999998865 34556778999999999999999998875 578999999
Q ss_pred eeecCCCc----------------eeeecCccccc--cchhhhcccccCeeeeccc
Q 048733 625 LLNARNTK----------------ILDLAHTFVSE--LPEEIRNLKKLRSLIVFHY 662 (887)
Q Consensus 625 ~L~L~~~~----------------~Ldl~~~~l~~--lp~~i~~l~~L~~L~l~~~ 662 (887)
+|+|++|. +|++++|.+.. +|..+.++++|++|++++|
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 99999886 89999998764 5778889999999999886
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.62 E-value=2.3e-16 Score=168.41 Aligned_cols=223 Identities=16% Similarity=0.099 Sum_probs=144.2
Q ss_pred CCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCC---ccccccccccceeecCCCceeeecCccccccchh
Q 048733 571 DSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYL---PEGVGNLFNLHLLNARNTKILDLAHTFVSELPEE 647 (887)
Q Consensus 571 ~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l---p~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~ 647 (887)
.++++.|.+.++.. ..+....|.++++|++|+|++|.+..+ |..+..+++|++|++++| .+..+|..
T Consensus 27 ~~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n--------~i~~l~~~ 96 (306)
T 2z66_A 27 PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN--------GVITMSSN 96 (306)
T ss_dssp CTTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC--------SEEEEEEE
T ss_pred CCCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC--------ccccChhh
Confidence 36899999988875 345556789999999999999998855 677788999999988876 47778888
Q ss_pred hhcccccCeeeecccccccccccchhhhhhcc--CCccccccccccccccccCceecchHHHHHhhccccccceeEEecc
Q 048733 648 IRNLKKLRSLIVFHYKYITGSIIPTEAAAKIH--RGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQN 725 (887)
Q Consensus 648 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p--~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 725 (887)
+.++++|++|++++| ....++ ..+..+++|++|. ++.+.+....+..+..+++
T Consensus 97 ~~~l~~L~~L~l~~n-----------~l~~~~~~~~~~~l~~L~~L~----l~~n~l~~~~~~~~~~l~~---------- 151 (306)
T 2z66_A 97 FLGLEQLEHLDFQHS-----------NLKQMSEFSVFLSLRNLIYLD----ISHTHTRVAFNGIFNGLSS---------- 151 (306)
T ss_dssp EETCTTCCEEECTTS-----------EEESSTTTTTTTTCTTCCEEE----CTTSCCEECSTTTTTTCTT----------
T ss_pred cCCCCCCCEEECCCC-----------cccccccchhhhhccCCCEEE----CCCCcCCccchhhcccCcC----------
Confidence 889999999999997 344444 3578889999888 5555443333333444444
Q ss_pred CChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CC-CChhhhcCCCcceeEEEecccCCcC
Q 048733 726 GNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KK-LPDWILKLKNLIGSRLILSGLTEDP 803 (887)
Q Consensus 726 ~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~-lp~~~~~l~~L~~L~L~~~~l~~~~ 803 (887)
|+.|++++|...+......+...+ +|+.|++++|. .. .|.++..+++|+.|+|++|.+...+
T Consensus 152 ---------------L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 152 ---------------LEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp ---------------CCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred ---------------CCEEECCCCccccccchhHHhhCc-CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence 444444444322211111222223 66666666542 22 3555666667777777776665533
Q ss_pred ---cCcCcccceeeeCcCCCceeEEEcCCCcc-CccEEEEccCCC
Q 048733 804 ---ISWFPKLRKLVLLNFEAVKSVIIEKGAMP-DIRELWIGPCPL 844 (887)
Q Consensus 804 ---~~~~~~L~~L~l~~~~~l~~~~~~~~~lp-~L~~L~l~~c~~ 844 (887)
+..+++|+.|++.++.-....+..+..+| +|+.|++++|+.
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 33456677777776643333344455564 788888887763
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.61 E-value=4.3e-16 Score=175.24 Aligned_cols=128 Identities=17% Similarity=0.248 Sum_probs=94.4
Q ss_pred CCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCc-cccccccccceeecCCCceeeecCccccccch-hh
Q 048733 571 DSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLP-EGVGNLFNLHLLNARNTKILDLAHTFVSELPE-EI 648 (887)
Q Consensus 571 ~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~-~i 648 (887)
.++++.|.+.++.. ..+.+..|.++++|++|+|++|.+..++ ..+.++++|++|+|++| .+..+|. .+
T Consensus 63 ~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~ 132 (440)
T 3zyj_A 63 STNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN--------RLTTIPNGAF 132 (440)
T ss_dssp CTTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS--------CCSSCCTTTS
T ss_pred CCCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC--------cCCeeCHhHh
Confidence 47899999998876 3455577899999999999999999775 67899999999998876 4778876 57
Q ss_pred hcccccCeeeecccccccccccchhhhhhccC-CccccccccccccccccCceec-chHHHHHhhccccccceeEEe
Q 048733 649 RNLKKLRSLIVFHYKYITGSIIPTEAAAKIHR-GFGSLRGLQSLRGLLALPTIEA-DSQVLKELMMLRQLNMLSIRR 723 (887)
Q Consensus 649 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~-~i~~L~~L~~L~~~~~l~~~~~-~~~~~~~l~~l~~L~~L~l~~ 723 (887)
.++++|++|++++| ....+|. .+..+++|++|+ ++.+.. .......+..+++|+.|++++
T Consensus 133 ~~l~~L~~L~L~~N-----------~i~~~~~~~~~~l~~L~~L~----l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 133 VYLSKLKELWLRNN-----------PIESIPSYAFNRIPSLRRLD----LGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp CSCSSCCEEECCSC-----------CCCEECTTTTTTCTTCCEEE----CCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred hccccCceeeCCCC-----------cccccCHHHhhhCcccCEeC----CCCCCCcceeCcchhhcccccCeecCCC
Confidence 89999999999998 4445554 588899999998 443221 111222344555555555554
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=2.5e-17 Score=176.10 Aligned_cols=243 Identities=18% Similarity=0.140 Sum_probs=180.5
Q ss_pred cccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCcccc--ccchhhh-------cccccCeeeeccc
Q 048733 592 SCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVS--ELPEEIR-------NLKKLRSLIVFHY 662 (887)
Q Consensus 592 ~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~--~lp~~i~-------~l~~L~~L~l~~~ 662 (887)
.++...+.|+.|++++|.+ .+|..+... |++|+|++|. +. .+|..+. ++++|++|++++|
T Consensus 37 ~~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~--------l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 105 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLT--------VRAARIPSRILFGALRVLGISGLQELTLENL 105 (312)
T ss_dssp EEEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEE--------EEEEECBHHHHHHHHHHHTTSCCCEEEEEEE
T ss_pred EEEccCCCceeEeeccccc-ccHHHHHHH--Hhhccccccc--------ccCCCcCHHHHHHHHHhcCcCCccEEEccCC
Confidence 3456678899999999999 888877766 8888887653 32 4666665 7999999999998
Q ss_pred ccccccccchhhhhhccCCc--cccccccccccccccCceecchHHHHHhhcc-----ccccceeEEeccCChhHHHHHH
Q 048733 663 KYITGSIIPTEAAAKIHRGF--GSLRGLQSLRGLLALPTIEADSQVLKELMML-----RQLNMLSIRRQNGNGRDLCALI 735 (887)
Q Consensus 663 ~~~~~~~~~~~~~~~~p~~i--~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~l~~~l 735 (887)
. ....+|..+ +.+++|++|+ ++.+.+... +..++.+ ++|+.|+++++.... ..+..+
T Consensus 106 ~----------l~~~~~~~~~~~~l~~L~~L~----Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~~~~~ 169 (312)
T 1wwl_A 106 E----------VTGTAPPPLLEATGPDLNILN----LRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQV 169 (312)
T ss_dssp B----------CBSCCCCCSSSCCSCCCSEEE----EESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC-CCTTTC
T ss_pred c----------ccchhHHHHHHhcCCCccEEE----ccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc-chHHHh
Confidence 2 222566665 8899999998 777777554 4555665 899999999753322 223567
Q ss_pred hcccCCcEEEEeecCCcccccc-Ccc--cccccccceeEEeecc-CCC---Ch-hhhcCCCcceeEEEecccCCcC----
Q 048733 736 ANLENVETLGVLMKSKEEILDL-QSL--SSPPQHLQYLSLRGNM-KKL---PD-WILKLKNLIGSRLILSGLTEDP---- 803 (887)
Q Consensus 736 ~~~~~L~~L~l~~~~~~~~~~l-~~l--~~~~~~L~~L~L~~~~-~~l---p~-~~~~l~~L~~L~L~~~~l~~~~---- 803 (887)
.++++|+.|++++|...+...+ ..+ ...+ +|+.|++++|. ..+ +. .+..+++|+.|+|++|.+...+
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFP-TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT-TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCC-CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 8899999999999875443211 122 3334 99999999874 433 32 3357899999999999988744
Q ss_pred cCcCcccceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 804 ISWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 804 ~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
...+++|++|++.++. ++.+|.... ++|+.|++++|. ++.+|. +..+++|++|++++|+
T Consensus 249 ~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 2246899999999975 556665544 899999999997 677777 8899999999999998
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=166.31 Aligned_cols=244 Identities=16% Similarity=0.172 Sum_probs=175.1
Q ss_pred CCCceEEEEecCCCcccc--ccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccc-cccccccce
Q 048733 549 CSKTRRITIQRSIDDGAL--ESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEG-VGNLFNLHL 625 (887)
Q Consensus 549 ~~~~r~lsi~~~~~~~~~--~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~ 625 (887)
...+++|.+.++...... ....+++|++|.+.++.. ....+..|.++++|++|+|++|.+..+|.. ++++++|++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc--CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 357899999877654322 245789999999998865 345566789999999999999999999876 899999999
Q ss_pred eecCCCceeeecCccccccch--hhhcccccCeeeecccccccccccchhhhhhc-cCCccccccccccccccccCceec
Q 048733 626 LNARNTKILDLAHTFVSELPE--EIRNLKKLRSLIVFHYKYITGSIIPTEAAAKI-HRGFGSLRGLQSLRGLLALPTIEA 702 (887)
Q Consensus 626 L~L~~~~~Ldl~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-p~~i~~L~~L~~L~~~~~l~~~~~ 702 (887)
|++++| .+..+|. .+.++++|++|++++|+ ....+ |..++++++|++|+ ++.+.+
T Consensus 129 L~L~~n--------~l~~l~~~~~~~~l~~L~~L~l~~n~----------~~~~~~~~~~~~l~~L~~L~----l~~n~l 186 (353)
T 2z80_A 129 LNLLGN--------PYKTLGETSLFSHLTKLQILRVGNMD----------TFTKIQRKDFAGLTFLEELE----IDASDL 186 (353)
T ss_dssp EECTTC--------CCSSSCSSCSCTTCTTCCEEEEEESS----------SCCEECTTTTTTCCEEEEEE----EEETTC
T ss_pred EECCCC--------CCcccCchhhhccCCCCcEEECCCCc----------cccccCHHHccCCCCCCEEE----CCCCCc
Confidence 999876 4778887 67899999999999873 12333 45688899999998 666666
Q ss_pred chHHHHHhhccccccceeEEeccCChhHHHH-HHhcccCCcEEEEeecCCcccc--ccCcccccccccceeEEeecc---
Q 048733 703 DSQVLKELMMLRQLNMLSIRRQNGNGRDLCA-LIANLENVETLGVLMKSKEEIL--DLQSLSSPPQHLQYLSLRGNM--- 776 (887)
Q Consensus 703 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~~~--~l~~l~~~~~~L~~L~L~~~~--- 776 (887)
....+..+..+++|+.|+++++.. ..++. .+..+++|+.|++++|...+.. .+.... ....++.++|.++.
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~-~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQH--ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE-TNSLIKKFTFRNVKITD 263 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCS--TTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCBCCH
T ss_pred CccCHHHHhccccCCeecCCCCcc--ccchhhhhhhcccccEEECCCCcccccccccccccc-ccchhhccccccccccC
Confidence 665667788999999999997543 23333 3456889999999988654321 111111 12267777776632
Q ss_pred ---CCCChhhhcCCCcceeEEEecccCCcCc---CcCcccceeeeCcCC
Q 048733 777 ---KKLPDWILKLKNLIGSRLILSGLTEDPI---SWFPKLRKLVLLNFE 819 (887)
Q Consensus 777 ---~~lp~~~~~l~~L~~L~L~~~~l~~~~~---~~~~~L~~L~l~~~~ 819 (887)
..+|.++..+++|+.|+|++|.+...+. ..+++|++|++.+++
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 2467788888888888888888765443 244555555555543
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=1.6e-17 Score=178.16 Aligned_cols=240 Identities=11% Similarity=0.035 Sum_probs=121.9
Q ss_pred ccCCCceeEEEEecCCCCCCCc-cccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccc
Q 048733 593 CIANFKLMKVLDLEDSPINYLP-EGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIP 671 (887)
Q Consensus 593 ~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 671 (887)
.+..+++|++|+|++|.+..++ ..++++++|++|+|++|. +..++. +..+++|++|++++|
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--------l~~~~~-~~~l~~L~~L~Ls~n--------- 90 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--------LYETLD-LESLSTLRTLDLNNN--------- 90 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC--------CEEEEE-ETTCTTCCEEECCSS---------
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc--------CCcchh-hhhcCCCCEEECcCC---------
Confidence 3444555555566555555443 345555555555555442 333332 445555555555554
Q ss_pred hhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCC
Q 048733 672 TEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSK 751 (887)
Q Consensus 672 ~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 751 (887)
....+| .+++|++|. ++.+.+.... ...+++|+.|+++++.... ..+..+..+++|+.|++++|..
T Consensus 91 --~l~~l~----~~~~L~~L~----l~~n~l~~~~---~~~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 91 --YVQELL----VGPSIETLH----AANNNISRVS---CSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp --EEEEEE----ECTTCCEEE----CCSSCCSEEE---ECCCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCC
T ss_pred --cccccc----CCCCcCEEE----CCCCccCCcC---ccccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCC
Confidence 111111 224444444 3333332211 1124455555555432211 1122344556666666666544
Q ss_pred ccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcC--cCcCcccceeeeCcCCCceeEEEcC
Q 048733 752 EEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDP--ISWFPKLRKLVLLNFEAVKSVIIEK 828 (887)
Q Consensus 752 ~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~ 828 (887)
..... ..+....++|+.|+|++|. ..+|.. ..+++|+.|+|++|.+...+ +..+++|+.|++.++. +..+|..+
T Consensus 157 ~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~ 233 (317)
T 3o53_A 157 DTVNF-AELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKAL 233 (317)
T ss_dssp CEEEG-GGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTC
T ss_pred CcccH-HHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHh
Confidence 33211 2222122266666666653 333322 23666777777766665432 2355666777776653 45566556
Q ss_pred CCccCccEEEEccCCCC-CccccccccCCCCCEEEEEech
Q 048733 829 GAMPDIRELWIGPCPLL-MEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 829 ~~lp~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
..+++|+.|++++|+.. ..+|..+..+++|+.|++.+|+
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 66777777777777754 3566666677777777666554
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.60 E-value=6e-16 Score=174.74 Aligned_cols=201 Identities=18% Similarity=0.199 Sum_probs=122.9
Q ss_pred CCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCc-cccccccccceeecCCCceeeecCccccccchh-h
Q 048733 571 DSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLP-EGVGNLFNLHLLNARNTKILDLAHTFVSELPEE-I 648 (887)
Q Consensus 571 ~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~-i 648 (887)
.++++.|.+.++.. ..+.+..|.++++|++|+|++|.+..++ ..+.++++|++|+|++| .+..+|.. +
T Consensus 74 ~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~ 143 (452)
T 3zyi_A 74 PSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN--------WLTVIPSGAF 143 (452)
T ss_dssp CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--------CCSBCCTTTS
T ss_pred CCCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC--------cCCccChhhh
Confidence 36899999998876 3455678899999999999999999765 77899999999998876 47788765 6
Q ss_pred hcccccCeeeecccccccccccchhhhhhccC-CccccccccccccccccCceec-chHHHHHhhccccccceeEEeccC
Q 048733 649 RNLKKLRSLIVFHYKYITGSIIPTEAAAKIHR-GFGSLRGLQSLRGLLALPTIEA-DSQVLKELMMLRQLNMLSIRRQNG 726 (887)
Q Consensus 649 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~-~i~~L~~L~~L~~~~~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~ 726 (887)
.++++|++|++++| ....+|. .+.++++|+.|+ ++.+.. .......+..+++|+.|+++++..
T Consensus 144 ~~l~~L~~L~L~~N-----------~l~~~~~~~~~~l~~L~~L~----l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 144 EYLSKLRELWLRNN-----------PIESIPSYAFNRVPSLMRLD----LGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp SSCTTCCEEECCSC-----------CCCEECTTTTTTCTTCCEEE----CCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cccCCCCEEECCCC-----------CcceeCHhHHhcCCcccEEe----CCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 78999999999998 4455554 578899999998 433211 111122344555555555554221
Q ss_pred ChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-C-CCChhhhcCCCcceeEEEecccCC
Q 048733 727 NGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-K-KLPDWILKLKNLIGSRLILSGLTE 801 (887)
Q Consensus 727 ~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~-~lp~~~~~l~~L~~L~L~~~~l~~ 801 (887)
.. + ..+..+++|+.|++++|...+... ..+...+ +|+.|+|++|. . ..|..+..+++|+.|+|++|.+..
T Consensus 209 ~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 209 KD--M-PNLTPLVGLEELEMSGNHFPEIRP-GSFHGLS-SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp SS--C-CCCTTCTTCCEEECTTSCCSEECG-GGGTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cc--c-ccccccccccEEECcCCcCcccCc-ccccCcc-CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 11 1 123344455555555443332211 1222222 45555554432 1 223344444555555555554443
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=1.4e-17 Score=178.46 Aligned_cols=245 Identities=12% Similarity=0.051 Sum_probs=177.5
Q ss_pred CCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhh
Q 048733 569 IKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEI 648 (887)
Q Consensus 569 ~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i 648 (887)
..+++|+.|.+.++.. ....+..|.++++|++|+|++|.+...+. +..+++|++|++++|. +..+|
T Consensus 31 ~~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~--------l~~l~--- 96 (317)
T 3o53_A 31 QSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY--------VQELL--- 96 (317)
T ss_dssp TTGGGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE--------EEEEE---
T ss_pred ccCCCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc--------ccccc---
Confidence 3567899999988866 33455678899999999999999886664 8889999988888764 55555
Q ss_pred hcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCCh
Q 048733 649 RNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNG 728 (887)
Q Consensus 649 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 728 (887)
..++|++|++++| ....++. ..+++|++|. ++.+.+.......++.+++|+.|+++++....
T Consensus 97 -~~~~L~~L~l~~n-----------~l~~~~~--~~~~~L~~L~----l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 97 -VGPSIETLHAANN-----------NISRVSC--SRGQGKKNIY----LANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp -ECTTCCEEECCSS-----------CCSEEEE--CCCSSCEEEE----CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred -CCCCcCEEECCCC-----------ccCCcCc--cccCCCCEEE----CCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 3488999999987 3333332 2367788887 77777766655667888999999998754333
Q ss_pred hHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcC--cC
Q 048733 729 RDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDP--IS 805 (887)
Q Consensus 729 ~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~--~~ 805 (887)
.........+++|+.|++++|..... ......+ +|+.|+|++|. ..+|..+..+++|+.|+|++|.+...+ +.
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 234 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFA-KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCT-TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCC
T ss_pred ccHHHHhhccCcCCEEECCCCcCccc---ccccccc-cCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhh
Confidence 22222234678999999998876554 2222334 89999999874 667777888999999999999887644 44
Q ss_pred cCcccceeeeCcCCCc-eeEEEcCCCccCccEEEEccCCCCCccc
Q 048733 806 WFPKLRKLVLLNFEAV-KSVIIEKGAMPDIRELWIGPCPLLMEIP 849 (887)
Q Consensus 806 ~~~~L~~L~l~~~~~l-~~~~~~~~~lp~L~~L~l~~c~~l~~lp 849 (887)
.+++|+.|++.+++-. ..++...+.+++|+.|++.+|+.++..+
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 6789999999987744 3444556678899999988776555443
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=4.9e-16 Score=182.37 Aligned_cols=304 Identities=16% Similarity=0.162 Sum_probs=204.8
Q ss_pred CCCceEEEEecCCCcc------ccccCCCCceeEEEeecCCCC--CccccccccCCCceeEEEEecCCCCCCCccccccc
Q 048733 549 CSKTRRITIQRSIDDG------ALESIKDSKVRSVILFNVDKL--PDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNL 620 (887)
Q Consensus 549 ~~~~r~lsi~~~~~~~------~~~~~~~~~lrsL~~~~~~~~--~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L 620 (887)
+.++++|.+..+.... ......+++|++|.+.++... ....+...+.++++|+.|+|++|.+..+|..+..+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 3566777776553211 111235678888888766542 22344556678888999999998888888888888
Q ss_pred cccceeecCCCc-------------------eeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhccCC
Q 048733 621 FNLHLLNARNTK-------------------ILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRG 681 (887)
Q Consensus 621 ~~L~~L~L~~~~-------------------~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~ 681 (887)
++|++|+++.+. .|+++++....+|..+..+++|++|++++|. +++. .++..
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~--------~~~~~ 313 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETE--------DHCTL 313 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHH--------HHHHH
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHH--------HHHHH
Confidence 889988886321 5677766667788888899999999999883 2211 12223
Q ss_pred ccccccccccccccccCceecchHHHHHhhccccccceeEEe-----------ccCChhHHHHHHhcccCCcEEEEeecC
Q 048733 682 FGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRR-----------QNGNGRDLCALIANLENVETLGVLMKS 750 (887)
Q Consensus 682 i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~~~~~l~~~l~~~~~L~~L~l~~~~ 750 (887)
++.+++|++|. +.....+.........+++|+.|+++. +......+......+++|+.|.+.++.
T Consensus 314 ~~~~~~L~~L~----L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 389 (592)
T 3ogk_B 314 IQKCPNLEVLE----TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389 (592)
T ss_dssp HTTCTTCCEEE----EEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred HHhCcCCCEEe----ccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence 56788888887 432212233334446789999999992 344455566667778999999997665
Q ss_pred CccccccCcccccccccceeEEee-----ccCCC------ChhhhcCCCcceeEEEecc--cCCcCc----CcCccccee
Q 048733 751 KEEILDLQSLSSPPQHLQYLSLRG-----NMKKL------PDWILKLKNLIGSRLILSG--LTEDPI----SWFPKLRKL 813 (887)
Q Consensus 751 ~~~~~~l~~l~~~~~~L~~L~L~~-----~~~~l------p~~~~~l~~L~~L~L~~~~--l~~~~~----~~~~~L~~L 813 (887)
..+. .+..+...+++|+.|++++ ..... +..+..+++|+.|+|++|. +....+ ..+++|+.|
T Consensus 390 l~~~-~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L 468 (592)
T 3ogk_B 390 ITNE-SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468 (592)
T ss_dssp CCHH-HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEE
T ss_pred ccHH-HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEe
Confidence 4432 2233433234899999974 22332 2335678999999998765 443222 248899999
Q ss_pred eeCcCCCce-eEEEcCCCccCccEEEEccCCCCCc--cccccccCCCCCEEEEEech
Q 048733 814 VLLNFEAVK-SVIIEKGAMPDIRELWIGPCPLLME--IPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 814 ~l~~~~~l~-~~~~~~~~lp~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~ 867 (887)
.+.+|..-. .++.....+++|+.|+|++|+ ++. ++..+.++++|++|++++|+
T Consensus 469 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 469 LLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp EECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred eccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 999876221 223334678999999999998 442 56666789999999999998
No 68
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=6.1e-14 Score=153.15 Aligned_cols=312 Identities=15% Similarity=0.122 Sum_probs=177.1
Q ss_pred ccCccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCC-----CCHHHHHH
Q 048733 169 EDDEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE-----YNKNDLLR 243 (887)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~~~~~ 243 (887)
.+..|+||++++++|.+ +.. +++.|+|++|+|||||++++++.. .. ..+|+.+... .+...++.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHHHHHH
Confidence 35679999999999999 654 489999999999999999999852 22 2578887642 34555555
Q ss_pred HHHHHHhhcc----------CCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh-----H
Q 048733 244 TIIKEFHRLS----------KHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID-----F 308 (887)
Q Consensus 244 ~i~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-----~ 308 (887)
.+.+.+.... ................ +..........+.+.+.+..+ ++++|||||++..+ .
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFN--WNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-------CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEec--cCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchh
Confidence 5555443200 0000000000000000 000012245566666655433 49999999995432 2
Q ss_pred HHHHHHhcCCCCCCcEEEEEccchhHHh-h---hc----cCCC-cceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHH
Q 048733 309 WRDVEHALLDNKKCSRIIVTTRHMNVAK-F---CK----LSSS-VRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELK 379 (887)
Q Consensus 309 ~~~l~~~l~~~~~gs~iivTtR~~~v~~-~---~~----~~~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~ 379 (887)
|..+...+.....+.++|+|++...... . .. .... ...+.+.+|+.+++.+++.+.+.... ......
T Consensus 157 ~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~---~~~~~~- 232 (357)
T 2fna_A 157 LLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD---IDFKDY- 232 (357)
T ss_dssp CHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT---CCCCCH-
T ss_pred HHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcC---CCCCcH-
Confidence 3233333322224678999999765322 1 00 0111 25789999999999999987542111 011111
Q ss_pred HHHHHHHHHhCCCchHHHHHhhhhcCCCCCHHHHHHH-HHHhccccCCCCCccchHHHHh-hcc--cCCChhhHHHHhhh
Q 048733 380 ELSQDILAKCGGLPLAIVAVGGLLSTKNRIVSEWKKL-FDRLGSMLGSDPHLKDCNRVLS-EGY--YDLPHHLKSCLLYF 455 (887)
Q Consensus 380 ~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~i~~~l~-~sy--~~Lp~~~k~cf~~~ 455 (887)
..|++.|+|+|+++..++..+..... ...|..- .+... ..+...+. +.+ ..||+..+..+..+
T Consensus 233 ---~~i~~~t~G~P~~l~~~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~l~~~~~~~l~~l 299 (357)
T 2fna_A 233 ---EVVYEKIGGIPGWLTYFGFIYLDNKN-LDFAINQTLEYAK---------KLILKEFENFLHGREIARKRYLNIMRTL 299 (357)
T ss_dssp ---HHHHHHHCSCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH---------HHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred ---HHHHHHhCCCHHHHHHHHHHHccccc-hHHHHHHHHHHHH---------HHHHHHHHHHhhccccccHHHHHHHHHH
Confidence 78999999999999999877643222 3333221 11110 01111111 111 16888999999999
Q ss_pred cccCCCcccChhHHHHHHH-HcCccccCCCCCHHHHHHHHHHHHhhcCCeeeeecCCCCceeEEEeCHHHHHHH
Q 048733 456 GLFPESCKINRGRLIRLWI-AEGLVQYSKRFTSEQVAAEYLDELIDRSLVQVSNREIPGRAIICHVHDLMHEII 528 (887)
Q Consensus 456 s~fp~~~~i~~~~li~~w~-a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~Hdlv~~~~ 528 (887)
|. +. +...+..... ..|. .........+++.|.+.+++.... + .+...|++++++.
T Consensus 300 a~---g~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~----~--~y~f~~~~~~~~l 356 (357)
T 2fna_A 300 SK---CG--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG----E--KYCPSEPLISLAF 356 (357)
T ss_dssp TT---CB--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS----S--CEEESSHHHHHHT
T ss_pred Hc---CC--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC----C--EEEecCHHHHHhh
Confidence 98 22 3333332211 1121 011345778999999999997653 1 2344689998864
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=8.6e-16 Score=174.38 Aligned_cols=234 Identities=12% Similarity=0.033 Sum_probs=117.5
Q ss_pred CCCceeEEEEecCCCCCCCc-cccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchh
Q 048733 595 ANFKLMKVLDLEDSPINYLP-EGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTE 673 (887)
Q Consensus 595 ~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 673 (887)
..+++|++|+|++|.+..+| ..++.+++|++|+|++|. +..+++ +..+++|++|++++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--------l~~~~~-l~~l~~L~~L~Ls~N----------- 90 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--------LYETLD-LESLSTLRTLDLNNN----------- 90 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC--------CEEEEE-CTTCTTCCEEECCSS-----------
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC--------CCCCcc-cccCCCCCEEEecCC-----------
Confidence 44557888888888877654 567788888877777653 444443 677778888888776
Q ss_pred hhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCcc
Q 048733 674 AAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEE 753 (887)
Q Consensus 674 ~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~ 753 (887)
....+| ..++|++|. ++.+.+..... ..+++|+.|+++++.... ..+..+.++++|+.|++++|...+
T Consensus 91 ~l~~l~----~~~~L~~L~----L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 91 YVQELL----VGPSIETLH----AANNNISRVSC---SRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp EEEEEE----ECTTCCEEE----CCSSCCCCEEE---CCCSSCEEEECCSSCCCS-GGGBCGGGGSSEEEEECTTSCCCE
T ss_pred cCCCCC----CCCCcCEEE----CcCCcCCCCCc---cccCCCCEEECCCCCCCC-CCchhhcCCCCCCEEECCCCCCCC
Confidence 222222 224555555 33433322111 123455555555432211 112234455566666665554433
Q ss_pred ccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcCc--CcCcccceeeeCcCCCceeEEEcCCC
Q 048733 754 ILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDPI--SWFPKLRKLVLLNFEAVKSVIIEKGA 830 (887)
Q Consensus 754 ~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~ 830 (887)
... ..+....++|+.|+|++|. ..+|. ...+++|+.|+|++|.++..+. ..+++|+.|++.++. +..+|..++.
T Consensus 159 ~~~-~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~ 235 (487)
T 3oja_A 159 VNF-AELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRF 235 (487)
T ss_dssp EEG-GGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCC
T ss_pred cCh-HHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-Ccccchhhcc
Confidence 221 1222111255555555542 22322 2235555555555555544322 244555555555543 3344444455
Q ss_pred ccCccEEEEccCCCC-CccccccccCCCCCEEEE
Q 048733 831 MPDIRELWIGPCPLL-MEIPIGIDHLRNLELLTF 863 (887)
Q Consensus 831 lp~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l 863 (887)
+++|+.|++++|+.. ..+|..+..+++|+.+.+
T Consensus 236 l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 555555555555533 234444445555544444
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.59 E-value=6.3e-15 Score=165.53 Aligned_cols=267 Identities=16% Similarity=0.155 Sum_probs=160.4
Q ss_pred CCceEEEEecCCCccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecC
Q 048733 550 SKTRRITIQRSIDDGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNAR 629 (887)
Q Consensus 550 ~~~r~lsi~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 629 (887)
..++++.+..+..........+++|+.|.+.++... . ++. ....|++|++++|.+..+| .++++++|++|+++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~--~-lp~---~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK--K-LPD---LPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS--C-CCC---CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCc--c-cCC---CcccccEEECcCCcCCcCc-cccCCCCCCEEECC
Confidence 467778777655433334566788888888877542 1 222 2347888888888888887 68899999999988
Q ss_pred CCc------------eeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhccCCcccccccccccccccc
Q 048733 630 NTK------------ILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLAL 697 (887)
Q Consensus 630 ~~~------------~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l 697 (887)
+|. +|++++|.+..+|. +.++++|++|++++| ....+|.. +++|+.|+ +
T Consensus 204 ~N~l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N-----------~l~~l~~~---~~~L~~L~----l 264 (454)
T 1jl5_A 204 NNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNN-----------LLKTLPDL---PPSLEALN----V 264 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSS-----------CCSSCCSC---CTTCCEEE----C
T ss_pred CCcCCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCC-----------cCCccccc---ccccCEEE----C
Confidence 875 78888888888884 788888888888887 33344442 35666666 5
Q ss_pred CceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-
Q 048733 698 PTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM- 776 (887)
Q Consensus 698 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~- 776 (887)
+.+.+... + ..+++|+.|+++++.... ++ .-.++|+.|++++|...+. ...+++|+.|++++|.
T Consensus 265 ~~N~l~~l-~---~~~~~L~~L~ls~N~l~~--l~---~~~~~L~~L~l~~N~l~~i------~~~~~~L~~L~Ls~N~l 329 (454)
T 1jl5_A 265 RDNYLTDL-P---ELPQSLTFLDVSENIFSG--LS---ELPPNLYYLNASSNEIRSL------CDLPPSLEELNVSNNKL 329 (454)
T ss_dssp CSSCCSCC-C---CCCTTCCEEECCSSCCSE--ES---CCCTTCCEEECCSSCCSEE------CCCCTTCCEEECCSSCC
T ss_pred CCCccccc-C---cccCcCCEEECcCCccCc--cc---CcCCcCCEEECcCCcCCcc------cCCcCcCCEEECCCCcc
Confidence 45544321 1 123678888887643322 10 0125788888887755432 2233489999999874
Q ss_pred CCCChhhhcCCCcceeEEEecccCCcCcCcCcccceeeeCcCCCce--eEEEcCCCc-------------cCccEEEEcc
Q 048733 777 KKLPDWILKLKNLIGSRLILSGLTEDPISWFPKLRKLVLLNFEAVK--SVIIEKGAM-------------PDIRELWIGP 841 (887)
Q Consensus 777 ~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~l-------------p~L~~L~l~~ 841 (887)
..+|.+ +++|+.|+|++|.+...+. .+++|++|++.++.-.. .+|..++.+ ++|+.|++++
T Consensus 330 ~~lp~~---~~~L~~L~L~~N~l~~lp~-~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~ 405 (454)
T 1jl5_A 330 IELPAL---PPRLERLIASFNHLAEVPE-LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET 405 (454)
T ss_dssp SCCCCC---CTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------
T ss_pred cccccc---CCcCCEEECCCCccccccc-hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCC
Confidence 567754 5889999999999887665 68899999999875433 445455555 8999999999
Q ss_pred CCCCC--ccccccccCCCCCEEEEEech
Q 048733 842 CPLLM--EIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 842 c~~l~--~lp~~~~~l~~L~~L~l~~c~ 867 (887)
|+... .+|. +|+.|.+.+|.
T Consensus 406 N~l~~~~~iP~------sl~~L~~~~~~ 427 (454)
T 1jl5_A 406 NPLREFPDIPE------SVEDLRMNSER 427 (454)
T ss_dssp ----------------------------
T ss_pred CcCCccccchh------hHhheeCcCcc
Confidence 98543 4553 45566666654
No 71
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.58 E-value=1.4e-14 Score=171.63 Aligned_cols=117 Identities=23% Similarity=0.225 Sum_probs=91.8
Q ss_pred CceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCcc-ccccccccceeecCCCc----------------ee
Q 048733 572 SKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPE-GVGNLFNLHLLNARNTK----------------IL 634 (887)
Q Consensus 572 ~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~----------------~L 634 (887)
+.++.|.+.++.. ..+.+..|.++++|++|+|++|.|+.+|. .|.+|++|++|+|++|. +|
T Consensus 52 ~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 4799999999876 45566789999999999999999998865 68999999999999986 78
Q ss_pred eecCccccccchh-hhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecc
Q 048733 635 DLAHTFVSELPEE-IRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEAD 703 (887)
Q Consensus 635 dl~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~ 703 (887)
+|++|.+..+|.. +.++++|++|++++|. ++ ...+|..++.+++|++|. ++.+.+.
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~--------~~~~~~~~~~l~~L~~L~----L~~N~l~ 186 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNL-IQ--------SFKLPEYFSNLTNLEHLD----LSSNKIQ 186 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CC--------CCCCCGGGGGCTTCCEEE----CCSSCCC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCc-cc--------cCCCchhhccchhhhhhc----ccCcccc
Confidence 8888888887764 6788888888888862 11 123455677788888887 5555543
No 72
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=4.2e-16 Score=182.98 Aligned_cols=285 Identities=15% Similarity=0.105 Sum_probs=179.9
Q ss_pred CCCceeEEEeecCCCCC--ccccccccCCCceeEEEEecCCCCC-----CCccccccccccceeecCCCceeeecCcccc
Q 048733 570 KDSKVRSVILFNVDKLP--DSFVKSCIANFKLMKVLDLEDSPIN-----YLPEGVGNLFNLHLLNARNTKILDLAHTFVS 642 (887)
Q Consensus 570 ~~~~lrsL~~~~~~~~~--~~~~~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~ 642 (887)
.+++|+.|.+.++.... ...+...+..++.|+.|+|++|.+. .++..+.++++|++|++++| .+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~--------~~~ 233 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF--------EIL 233 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC--------BGG
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc--------cHH
Confidence 46777777777664211 1113344566777777777777765 33444556777777777664 466
Q ss_pred ccchhhhcccccCeeeecccccccc--cc--------------cchhhhhhccCCccccccccccccccccCceecchHH
Q 048733 643 ELPEEIRNLKKLRSLIVFHYKYITG--SI--------------IPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQV 706 (887)
Q Consensus 643 ~lp~~i~~l~~L~~L~l~~~~~~~~--~~--------------~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~ 706 (887)
.+|..+.++++|++|+++.+..... .. +.......+|..+..+++|+.|+ ++.+.+....
T Consensus 234 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~----Ls~~~l~~~~ 309 (592)
T 3ogk_B 234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD----LLYALLETED 309 (592)
T ss_dssp GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEE----ETTCCCCHHH
T ss_pred HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEe----cCCCcCCHHH
Confidence 6777777888888888864311100 00 00001234555567788888887 6666654444
Q ss_pred H-HHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEee----------cCCccccccCcccccccccceeEEeec
Q 048733 707 L-KELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLM----------KSKEEILDLQSLSSPPQHLQYLSLRGN 775 (887)
Q Consensus 707 ~-~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~----------~~~~~~~~l~~l~~~~~~L~~L~L~~~ 775 (887)
+ ..+..+++|+.|++. +......++.....+++|++|++.. +.......+..+...+++|+.|+++.+
T Consensus 310 ~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 388 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388 (592)
T ss_dssp HHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred HHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence 4 446889999999998 4444555666677889999999994 333222222232233348999999654
Q ss_pred c-C-CCChhhhc-CCCcceeEEEe----cccCCcC--------cCcCcccceeeeCcCCC-cee--EEEcCCCccCccEE
Q 048733 776 M-K-KLPDWILK-LKNLIGSRLIL----SGLTEDP--------ISWFPKLRKLVLLNFEA-VKS--VIIEKGAMPDIREL 837 (887)
Q Consensus 776 ~-~-~lp~~~~~-l~~L~~L~L~~----~~l~~~~--------~~~~~~L~~L~l~~~~~-l~~--~~~~~~~lp~L~~L 837 (887)
. . ..+..+.. +++|+.|+|++ +.++..+ ...+++|++|.+..|.. +.. +......+|+|+.|
T Consensus 389 ~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L 468 (592)
T 3ogk_B 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468 (592)
T ss_dssp CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEE
T ss_pred CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEe
Confidence 3 2 23334544 89999999984 3455432 22689999999976553 221 11112348999999
Q ss_pred EEccCCCCC-ccccccccCCCCCEEEEEech
Q 048733 838 WIGPCPLLM-EIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 838 ~l~~c~~l~-~lp~~~~~l~~L~~L~l~~c~ 867 (887)
++++|.... .++..+.++++|++|++++|+
T Consensus 469 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 469 LLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp EECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred eccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 999987332 356667889999999999997
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=1.2e-16 Score=181.34 Aligned_cols=234 Identities=12% Similarity=0.042 Sum_probs=173.8
Q ss_pred CCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhh
Q 048733 570 KDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIR 649 (887)
Q Consensus 570 ~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~ 649 (887)
.+++|++|.+.++.. ..+.+..|.++++|++|+|++|.+...+. ++.+++|++|+|++|. +..+|.
T Consensus 32 ~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~--------l~~l~~--- 97 (487)
T 3oja_A 32 SAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY--------VQELLV--- 97 (487)
T ss_dssp TGGGCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE--------EEEEEE---
T ss_pred cCCCccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc--------CCCCCC---
Confidence 456899999999876 34556788999999999999999986665 8999999999998764 555553
Q ss_pred cccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChh
Q 048733 650 NLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGR 729 (887)
Q Consensus 650 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 729 (887)
.++|++|++++| ....+|. ..+++|++|. ++.+.+....+..++.+++|+.|+++++.....
T Consensus 98 -~~~L~~L~L~~N-----------~l~~~~~--~~l~~L~~L~----L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 98 -GPSIETLHAANN-----------NISRVSC--SRGQGKKNIY----LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (487)
T ss_dssp -CTTCCEEECCSS-----------CCCCEEE--CCCSSCEEEE----CCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred -CCCcCEEECcCC-----------cCCCCCc--cccCCCCEEE----CCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc
Confidence 378888888887 2333332 2456778777 667777666666678888899988887544332
Q ss_pred HHHHHHh-cccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcC--cC
Q 048733 730 DLCALIA-NLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDP--IS 805 (887)
Q Consensus 730 ~l~~~l~-~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~--~~ 805 (887)
.+..+. ++++|+.|++++|...+.. .....+ +|+.|+|++|. ..+|..+..+++|+.|+|++|.+...| +.
T Consensus 160 -~~~~l~~~l~~L~~L~Ls~N~l~~~~---~~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~ 234 (487)
T 3oja_A 160 -NFAELAASSDTLEHLNLQYNFIYDVK---GQVVFA-KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234 (487)
T ss_dssp -EGGGGGGGTTTCCEEECTTSCCCEEE---CCCCCT-TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCC
T ss_pred -ChHHHhhhCCcccEEecCCCcccccc---ccccCC-CCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhc
Confidence 233443 6889999999988765542 223334 89999999874 667777888999999999999988654 34
Q ss_pred cCcccceeeeCcCCCc-eeEEEcCCCccCccEEEEc
Q 048733 806 WFPKLRKLVLLNFEAV-KSVIIEKGAMPDIRELWIG 840 (887)
Q Consensus 806 ~~~~L~~L~l~~~~~l-~~~~~~~~~lp~L~~L~l~ 840 (887)
.+++|+.|++.+++-. ..++...+.++.|+.|.+.
T Consensus 235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 6789999999987643 2445556778888888876
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=1.1e-16 Score=181.60 Aligned_cols=186 Identities=19% Similarity=0.135 Sum_probs=123.1
Q ss_pred ccCCccccccccccccccccCceecchHHHHHhh-----ccccccceeEEeccCChh---HHHHHHhcccCCcEEEEeec
Q 048733 678 IHRGFGSLRGLQSLRGLLALPTIEADSQVLKELM-----MLRQLNMLSIRRQNGNGR---DLCALIANLENVETLGVLMK 749 (887)
Q Consensus 678 ~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~---~l~~~l~~~~~L~~L~l~~~ 749 (887)
++..+..+++|++|+ ++.+.+.......+. .+++|+.|+++++..... .++..+.++++|++|++++|
T Consensus 219 l~~~l~~~~~L~~L~----Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 219 LCGIVASKASLRELA----LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHCTTCCEEE----CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHhCCCccEEe----ccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 444556677888877 666666544333332 478888888886544333 26777788899999999988
Q ss_pred CCcccc--cc-CcccccccccceeEEeecc-C-----CCChhhhcCCCcceeEEEecccCCcCcC--------cCcccce
Q 048733 750 SKEEIL--DL-QSLSSPPQHLQYLSLRGNM-K-----KLPDWILKLKNLIGSRLILSGLTEDPIS--------WFPKLRK 812 (887)
Q Consensus 750 ~~~~~~--~l-~~l~~~~~~L~~L~L~~~~-~-----~lp~~~~~l~~L~~L~L~~~~l~~~~~~--------~~~~L~~ 812 (887)
...... .+ ..+..++++|+.|++++|. . .+|.++..+++|+.|+|++|.+....+. ..++|++
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE
Confidence 653321 11 1122222389999999874 2 2577788899999999999988664322 2679999
Q ss_pred eeeCcCCCce----eEEEcCCCccCccEEEEccCCCCCc----ccccc-ccCCCCCEEEEEech
Q 048733 813 LVLLNFEAVK----SVIIEKGAMPDIRELWIGPCPLLME----IPIGI-DHLRNLELLTFHDMS 867 (887)
Q Consensus 813 L~l~~~~~l~----~~~~~~~~lp~L~~L~l~~c~~l~~----lp~~~-~~l~~L~~L~l~~c~ 867 (887)
|++.+|.--. .++..+..+++|++|++++|+.... +...+ ...++|+.|.+.++.
T Consensus 375 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred EECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 9999985322 4555556789999999999974322 11112 234568888876654
No 75
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.56 E-value=2.2e-15 Score=158.80 Aligned_cols=213 Identities=22% Similarity=0.231 Sum_probs=139.4
Q ss_pred EEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccch-hhhcccccCeeeecccccccccccchhhhhhc-
Q 048733 601 KVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPE-EIRNLKKLRSLIVFHYKYITGSIIPTEAAAKI- 678 (887)
Q Consensus 601 r~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~- 678 (887)
++++.+++.+..+|..+ .++|++|++++ |.+..+|. .+.++++|++|++++| ....+
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~--------n~i~~~~~~~~~~~~~L~~L~l~~n-----------~l~~~~ 72 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHG--------NRISHVPAASFRACRNLTILWLHSN-----------VLARID 72 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTT--------SCCCEECTTTTTTCTTCCEEECCSS-----------CCCEEC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeC--------CcCCccCHHHcccCCCCCEEECCCC-----------ccceeC
Confidence 67889998898888654 45777776664 57887775 5788999999999987 23333
Q ss_pred cCCccccccccccccccccCcee-cchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCcccccc
Q 048733 679 HRGFGSLRGLQSLRGLLALPTIE-ADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDL 757 (887)
Q Consensus 679 p~~i~~L~~L~~L~~~~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l 757 (887)
|..++.+++|++|+ ++.+. +.... +..+.++++|+.|++++|.......
T Consensus 73 ~~~~~~l~~L~~L~----l~~n~~l~~~~-------------------------~~~~~~l~~L~~L~l~~n~l~~~~~- 122 (285)
T 1ozn_A 73 AAAFTGLALLEQLD----LSDNAQLRSVD-------------------------PATFHGLGRLHTLHLDRCGLQELGP- 122 (285)
T ss_dssp TTTTTTCTTCCEEE----CCSCTTCCCCC-------------------------TTTTTTCTTCCEEECTTSCCCCCCT-
T ss_pred HhhcCCccCCCEEe----CCCCCCccccC-------------------------HHHhcCCcCCCEEECCCCcCCEECH-
Confidence 44566666666665 33332 21111 2234455666666666654433211
Q ss_pred CcccccccccceeEEeecc-CCCC-hhhhcCCCcceeEEEecccCCcC---cCcCcccceeeeCcCCCceeE-EEcCCCc
Q 048733 758 QSLSSPPQHLQYLSLRGNM-KKLP-DWILKLKNLIGSRLILSGLTEDP---ISWFPKLRKLVLLNFEAVKSV-IIEKGAM 831 (887)
Q Consensus 758 ~~l~~~~~~L~~L~L~~~~-~~lp-~~~~~l~~L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~-~~~~~~l 831 (887)
..+...+ +|+.|++++|. ..+| ..+..+++|+.|+|++|.+...+ +..+++|+.|++.++. +..+ +..+..+
T Consensus 123 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 200 (285)
T 1ozn_A 123 GLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDL 200 (285)
T ss_dssp TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTC
T ss_pred hHhhCCc-CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc-ccccCHhHccCc
Confidence 2233333 77777777753 4444 34667788888888888776544 3457778888888765 3333 4456778
Q ss_pred cCccEEEEccCCCCCccc-cccccCCCCCEEEEEech
Q 048733 832 PDIRELWIGPCPLLMEIP-IGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 832 p~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~ 867 (887)
++|+.|++++|. ++.+| ..+..+++|+.|++++||
T Consensus 201 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 201 GRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 899999998887 44454 457888999999998887
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.56 E-value=8.5e-15 Score=169.57 Aligned_cols=245 Identities=16% Similarity=0.058 Sum_probs=181.2
Q ss_pred CCCceEEEEecCCCccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeec
Q 048733 549 CSKTRRITIQRSIDDGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNA 628 (887)
Q Consensus 549 ~~~~r~lsi~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L 628 (887)
+.+++.|.+.++....... .+++|++|.+.++... . ++. .+++|++|+|++|.+..+|. .+.+|++|++
T Consensus 60 ~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~--~-lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT--S-LPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWI 128 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS--C-CCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEEC
T ss_pred CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC--c-CCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEEC
Confidence 3578999999776543322 6789999999998752 2 222 77899999999999999987 6778888888
Q ss_pred CCCceeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHH
Q 048733 629 RNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLK 708 (887)
Q Consensus 629 ~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~ 708 (887)
++| .+..+|.. +++|++|++++| ....+|..+ ++|+.|. +..+.+....
T Consensus 129 ~~N--------~l~~lp~~---l~~L~~L~Ls~N-----------~l~~l~~~~---~~L~~L~----L~~N~l~~l~-- 177 (622)
T 3g06_A 129 FGN--------QLTSLPVL---PPGLQELSVSDN-----------QLASLPALP---SELCKLW----AYNNQLTSLP-- 177 (622)
T ss_dssp CSS--------CCSCCCCC---CTTCCEEECCSS-----------CCSCCCCCC---TTCCEEE----CCSSCCSCCC--
T ss_pred CCC--------CCCcCCCC---CCCCCEEECcCC-----------cCCCcCCcc---CCCCEEE----CCCCCCCCCc--
Confidence 765 57778864 489999999998 344555433 4555555 4455553321
Q ss_pred HhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCC
Q 048733 709 ELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLK 787 (887)
Q Consensus 709 ~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~ 787 (887)
..+++|+.|+++++.... ++. ..++|+.|++++|..... ...+++|+.|+|++|. ..+| ..++
T Consensus 178 --~~~~~L~~L~Ls~N~l~~--l~~---~~~~L~~L~L~~N~l~~l------~~~~~~L~~L~Ls~N~L~~lp---~~l~ 241 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLAS--LPT---LPSELYKLWAYNNRLTSL------PALPSGLKELIVSGNRLTSLP---VLPS 241 (622)
T ss_dssp --CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSSC------CCCCTTCCEEECCSSCCSCCC---CCCT
T ss_pred --ccCCCCcEEECCCCCCCC--CCC---ccchhhEEECcCCccccc------CCCCCCCCEEEccCCccCcCC---CCCC
Confidence 457889999998753322 221 347899999998865432 2223489999999874 6677 5678
Q ss_pred CcceeEEEecccCCcCcCcCcccceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCCccccccc
Q 048733 788 NLIGSRLILSGLTEDPISWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGID 853 (887)
Q Consensus 788 ~L~~L~L~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~ 853 (887)
+|+.|+|++|.+...+. .+++|+.|++.+|. +..+|..+..+++|+.|+|++|+.....|..+.
T Consensus 242 ~L~~L~Ls~N~L~~lp~-~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 242 ELKELMVSGNRLTSLPM-LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TCCEEECCSSCCSCCCC-CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred cCcEEECCCCCCCcCCc-ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 99999999999987666 78999999999974 667887888999999999999996655555444
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=4.3e-16 Score=168.74 Aligned_cols=249 Identities=14% Similarity=0.096 Sum_probs=164.6
Q ss_pred eeEEEeecCCCCCccccccccCCC--ceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCcccc--ccchhhh
Q 048733 574 VRSVILFNVDKLPDSFVKSCIANF--KLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVS--ELPEEIR 649 (887)
Q Consensus 574 lrsL~~~~~~~~~~~~~~~~~~~~--~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~--~lp~~i~ 649 (887)
++++.+.++.. .+..+..+ +.+++|+++++.+...+..+..+++|++|++++|. +. .+|..+.
T Consensus 49 ~~~l~l~~~~~-----~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~--------l~~~~~~~~~~ 115 (336)
T 2ast_B 49 WQTLDLTGKNL-----HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV--------IEVSTLHGILS 115 (336)
T ss_dssp SSEEECTTCBC-----CHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE--------ECHHHHHHHHT
T ss_pred heeeccccccC-----CHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC--------cCHHHHHHHHh
Confidence 56777665543 13445555 78999999999988777778889999999988763 44 2777888
Q ss_pred cccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCce-ecchH-HHHHhhccccccceeEEec-cC
Q 048733 650 NLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTI-EADSQ-VLKELMMLRQLNMLSIRRQ-NG 726 (887)
Q Consensus 650 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~~-~~ 726 (887)
++++|++|++++|. .....|..++.+++|++|. ++.+ .+... ....+..+++|+.|+++++ ..
T Consensus 116 ~~~~L~~L~L~~~~----------l~~~~~~~l~~~~~L~~L~----L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 116 QCSKLQNLSLEGLR----------LSDPIVNTLAKNSNLVRLN----LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp TBCCCSEEECTTCB----------CCHHHHHHHTTCTTCSEEE----CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred hCCCCCEEeCcCcc----------cCHHHHHHHhcCCCCCEEE----CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 99999999999872 1223455577788888888 6666 45443 4555788899999998875 55
Q ss_pred ChhHHHHHHhccc-CCcEEEEeecCC-ccccccCcccccccccceeEEeecc---CCCChhhhcCCCcceeEEEecc-cC
Q 048733 727 NGRDLCALIANLE-NVETLGVLMKSK-EEILDLQSLSSPPQHLQYLSLRGNM---KKLPDWILKLKNLIGSRLILSG-LT 800 (887)
Q Consensus 727 ~~~~l~~~l~~~~-~L~~L~l~~~~~-~~~~~l~~l~~~~~~L~~L~L~~~~---~~lp~~~~~l~~L~~L~L~~~~-l~ 800 (887)
....++..+..++ +|+.|++++|.. .....+.......++|+.|++++|. ...+..+..+++|+.|+|++|. +.
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 5555777888888 999999987731 1111112222222388888888764 2455577778888888888884 33
Q ss_pred Cc---CcCcCcccceeeeCcCCCceeEEEcCCCc-cCccEEEEccCCCCCccccccc
Q 048733 801 ED---PISWFPKLRKLVLLNFEAVKSVIIEKGAM-PDIRELWIGPCPLLMEIPIGID 853 (887)
Q Consensus 801 ~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~l-p~L~~L~l~~c~~l~~lp~~~~ 853 (887)
.. .+..+++|+.|++.+| +..- ....+ .+|..|++++|......|..+.
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~--i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI--VPDG--TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS--SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred HHHHHHHhcCCCCCEEeccCc--cCHH--HHHHHHhhCcceEEecccCccccCCccc
Confidence 32 2446778888888776 1110 01112 2355666766654444554433
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=3.2e-16 Score=173.16 Aligned_cols=240 Identities=17% Similarity=0.074 Sum_probs=159.6
Q ss_pred ccccCCCceeEEEEecCCCCCC-----CccccccccccceeecCCCceeeecCcccc-ccchhh-------hcccccCee
Q 048733 591 KSCIANFKLMKVLDLEDSPINY-----LPEGVGNLFNLHLLNARNTKILDLAHTFVS-ELPEEI-------RNLKKLRSL 657 (887)
Q Consensus 591 ~~~~~~~~~Lr~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~-~lp~~i-------~~l~~L~~L 657 (887)
...+..+++|++|+|++|.+.. ++..+..+++|++|+|++|. -+.+. .+|..+ .++++|++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-----~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF-----TGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC-----TTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccc-----cCccccchhHHHHHHHHHHhhCCcccEE
Confidence 3456778899999999998873 44557789999999998864 11222 344444 688999999
Q ss_pred eecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHH----hhcc---------ccccceeEEec
Q 048733 658 IVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKE----LMML---------RQLNMLSIRRQ 724 (887)
Q Consensus 658 ~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~----l~~l---------~~L~~L~l~~~ 724 (887)
++++|. +++. ....+|..+..+++|++|. ++.+.+....+.. +..+ ++|+.|+++++
T Consensus 100 ~Ls~n~-l~~~-----~~~~l~~~l~~~~~L~~L~----L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 100 RLSDNA-FGPT-----AQEPLIDFLSKHTPLEHLY----LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp ECCSCC-CCTT-----THHHHHHHHHHCTTCCEEE----CCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred ECCCCc-CCHH-----HHHHHHHHHHhCCCCCEEE----CcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 999872 2211 2224666778888999988 7777765433333 4444 88999998875
Q ss_pred cCChhHHH---HHHhcccCCcEEEEeecCCcccc---ccC-cccccccccceeEEeecc------CCCChhhhcCCCcce
Q 048733 725 NGNGRDLC---ALIANLENVETLGVLMKSKEEIL---DLQ-SLSSPPQHLQYLSLRGNM------KKLPDWILKLKNLIG 791 (887)
Q Consensus 725 ~~~~~~l~---~~l~~~~~L~~L~l~~~~~~~~~---~l~-~l~~~~~~L~~L~L~~~~------~~lp~~~~~l~~L~~ 791 (887)
......++ ..+..+++|+.|++++|...... .++ .+...+ +|+.|+|++|. ..+|.++..+++|+.
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC-CccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 54433333 67778889999999888654211 112 333444 88999998863 346777888888999
Q ss_pred eEEEecccCCcC-------c--CcCcccceeeeCcCCCce----eEEEcC-CCccCccEEEEccCCCCC
Q 048733 792 SRLILSGLTEDP-------I--SWFPKLRKLVLLNFEAVK----SVIIEK-GAMPDIRELWIGPCPLLM 846 (887)
Q Consensus 792 L~L~~~~l~~~~-------~--~~~~~L~~L~l~~~~~l~----~~~~~~-~~lp~L~~L~l~~c~~l~ 846 (887)
|+|++|.+.... + ..+++|++|++.+|.--. .++... ..+|+|+.|++++|+...
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 999888876531 1 226777788777765322 144333 446778888887776433
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=1.4e-14 Score=154.69 Aligned_cols=199 Identities=19% Similarity=0.238 Sum_probs=117.1
Q ss_pred CCceeEEEEecCCCCC-CCcccc--ccccccceeecCCCceeeecCccccccchhhhcc-----cccCeeeecccccccc
Q 048733 596 NFKLMKVLDLEDSPIN-YLPEGV--GNLFNLHLLNARNTKILDLAHTFVSELPEEIRNL-----KKLRSLIVFHYKYITG 667 (887)
Q Consensus 596 ~~~~Lr~L~L~~~~l~-~lp~~i--~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~~~~ 667 (887)
++++|++|+|++|.+. .+|..+ +.+++|++|+|++| .+..+|..+..+ ++|++|++++|
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N--------~l~~~~~~~~~l~~~~~~~L~~L~L~~N----- 159 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV--------SWATRDAWLAELQQWLKPGLKVLSIAQA----- 159 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC--------BCSSSSSHHHHHHTTCCTTCCEEEEESC-----
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC--------CCcchhHHHHHHHHhhcCCCcEEEeeCC-----
Confidence 5778888888888877 567765 77888887777765 466667767666 78888888877
Q ss_pred cccchhhhhhcc-CCccccccccccccccccCceecchH--HHHHh--hccccccceeEEeccCCh-hHHH-HHHhcccC
Q 048733 668 SIIPTEAAAKIH-RGFGSLRGLQSLRGLLALPTIEADSQ--VLKEL--MMLRQLNMLSIRRQNGNG-RDLC-ALIANLEN 740 (887)
Q Consensus 668 ~~~~~~~~~~~p-~~i~~L~~L~~L~~~~~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~~~-~~l~-~~l~~~~~ 740 (887)
....++ ..++.+++|++|+ ++.+...+. .+..+ ..+++|+.|+++++.... ..++ ..+.++++
T Consensus 160 ------~l~~~~~~~~~~l~~L~~L~----Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 229 (312)
T 1wwl_A 160 ------HSLNFSCEQVRVFPALSTLD----LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229 (312)
T ss_dssp ------SCCCCCTTTCCCCSSCCEEE----CCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCC
T ss_pred ------CCccchHHHhccCCCCCEEE----CCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCC
Confidence 333343 5577777777777 555554332 33444 667777777776543321 1222 33345667
Q ss_pred CcEEEEeecCCccccccCcccccccccceeEEeec-cCCCChhhhcCCCcceeEEEecccCCcCcCcCcccceeeeCcCC
Q 048733 741 VETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGN-MKKLPDWILKLKNLIGSRLILSGLTEDPISWFPKLRKLVLLNFE 819 (887)
Q Consensus 741 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~~~L~~L~l~~~~ 819 (887)
|+.|++++|...+......+...+ +|+.|+|++| +..+|.++. ++|+.|+|++|.++
T Consensus 230 L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~------------------- 287 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAAGAPSCDWPS-QLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD------------------- 287 (312)
T ss_dssp CSEEECTTSCCCSSCCCSCCCCCT-TCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCC-------------------
T ss_pred CCEEECCCCcCCcccchhhhhhcC-CCCEEECCCCccChhhhhcc--CCceEEECCCCCCC-------------------
Confidence 777777766544322112222222 5555555554 234444433 44555555544443
Q ss_pred CceeEEEcCCCccCccEEEEccCC
Q 048733 820 AVKSVIIEKGAMPDIRELWIGPCP 843 (887)
Q Consensus 820 ~l~~~~~~~~~lp~L~~L~l~~c~ 843 (887)
.+|. +..+++|+.|++++|+
T Consensus 288 ---~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 288 ---RNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ---SCCC-TTTSCEEEEEECTTCT
T ss_pred ---CChh-HhhCCCCCEEeccCCC
Confidence 3332 5566777777777776
No 80
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.53 E-value=4.2e-15 Score=156.73 Aligned_cols=198 Identities=16% Similarity=0.163 Sum_probs=105.1
Q ss_pred CCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCC-ccccccccccceeecCCCceeeecCcccccc-chhh
Q 048733 571 DSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYL-PEGVGNLFNLHLLNARNTKILDLAHTFVSEL-PEEI 648 (887)
Q Consensus 571 ~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~l-p~~i 648 (887)
.++++.|.+.++.. ..+.+..|.++++|++|+|++|.+..+ |..+.++++|++|++++|. .+..+ |..+
T Consensus 31 ~~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------~l~~~~~~~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-------QLRSVDPATF 101 (285)
T ss_dssp CTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT-------TCCCCCTTTT
T ss_pred CCCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC-------CccccCHHHh
Confidence 34566666665544 223334556666666666666666644 4556666666666665542 24444 4455
Q ss_pred hcccccCeeeecccccccccccchhhhhhc-cCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCC
Q 048733 649 RNLKKLRSLIVFHYKYITGSIIPTEAAAKI-HRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGN 727 (887)
Q Consensus 649 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 727 (887)
.++++|++|++++| ....+ |..++.+++|++|. ++.+.+.....
T Consensus 102 ~~l~~L~~L~l~~n-----------~l~~~~~~~~~~l~~L~~L~----l~~n~l~~~~~-------------------- 146 (285)
T 1ozn_A 102 HGLGRLHTLHLDRC-----------GLQELGPGLFRGLAALQYLY----LQDNALQALPD-------------------- 146 (285)
T ss_dssp TTCTTCCEEECTTS-----------CCCCCCTTTTTTCTTCCEEE----CCSSCCCCCCT--------------------
T ss_pred cCCcCCCEEECCCC-----------cCCEECHhHhhCCcCCCEEE----CCCCcccccCH--------------------
Confidence 56666666666665 12222 22344455555554 33332222111
Q ss_pred hhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-C-CCChhhhcCCCcceeEEEecccCCcC--
Q 048733 728 GRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-K-KLPDWILKLKNLIGSRLILSGLTEDP-- 803 (887)
Q Consensus 728 ~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~-~lp~~~~~l~~L~~L~L~~~~l~~~~-- 803 (887)
..+.++++|+.|++++|....... ..+...+ +|+.|++++|. . ..|.++..+++|+.|+|++|.+...+
T Consensus 147 -----~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 147 -----DTFRDLGNLTHLFLHGNRISSVPE-RAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp -----TTTTTCTTCCEEECCSSCCCEECT-TTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred -----hHhccCCCccEEECCCCcccccCH-HHhcCcc-ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 224455666666666554332211 1223333 66777776653 2 33566666777777777777666544
Q ss_pred -cCcCcccceeeeCcCC
Q 048733 804 -ISWFPKLRKLVLLNFE 819 (887)
Q Consensus 804 -~~~~~~L~~L~l~~~~ 819 (887)
+..+++|+.|++.+++
T Consensus 220 ~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp HHTTCTTCCEEECCSSC
T ss_pred HcccCcccCEEeccCCC
Confidence 3356667777776654
No 81
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.52 E-value=2.6e-15 Score=176.36 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=39.0
Q ss_pred CcccceeeeCcCCCceeEEEc-CCCccCccEEEEccCCCCCc-cccccccCCCCCEEEEEechh
Q 048733 807 FPKLRKLVLLNFEAVKSVIIE-KGAMPDIRELWIGPCPLLME-IPIGIDHLRNLELLTFHDMSK 868 (887)
Q Consensus 807 ~~~L~~L~l~~~~~l~~~~~~-~~~lp~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~ 868 (887)
+++|+.|.+.+|......... ...+|+|+.|+|++|+.... ++..+..+++|+.|++++|+.
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 555666666655421111111 13479999999999985222 233456789999999999975
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=1.8e-15 Score=167.11 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=16.3
Q ss_pred ccCccEEEEccCCCCC----cccccc-ccCCCCCEEEEEech
Q 048733 831 MPDIRELWIGPCPLLM----EIPIGI-DHLRNLELLTFHDMS 867 (887)
Q Consensus 831 lp~L~~L~l~~c~~l~----~lp~~~-~~l~~L~~L~l~~c~ 867 (887)
+++|+.|+|++|.... .+|..+ .++++|+.|++++|+
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 4445555554444222 144444 334455555544443
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=5.7e-15 Score=159.87 Aligned_cols=223 Identities=15% Similarity=0.069 Sum_probs=151.8
Q ss_pred CceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCC--CccccccccccceeecCCCceeeecCcccc-ccchhh
Q 048733 572 SKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINY--LPEGVGNLFNLHLLNARNTKILDLAHTFVS-ELPEEI 648 (887)
Q Consensus 572 ~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~-~lp~~i 648 (887)
++++.|.+.++... ...+. +.++++|++|+|++|.+.. +|..+..+++|++|++++|. +. ..|..+
T Consensus 70 ~~l~~L~l~~n~l~--~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~--------l~~~~~~~l 138 (336)
T 2ast_B 70 QGVIAFRCPRSFMD--QPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR--------LSDPIVNTL 138 (336)
T ss_dssp TTCSEEECTTCEEC--SCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB--------CCHHHHHHH
T ss_pred ccceEEEcCCcccc--ccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc--------cCHHHHHHH
Confidence 67788877765431 12222 4568889999999888772 77778888888888888763 43 566777
Q ss_pred hcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCce-ecchH-HHHHhhccc-cccceeEEec-
Q 048733 649 RNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTI-EADSQ-VLKELMMLR-QLNMLSIRRQ- 724 (887)
Q Consensus 649 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~- 724 (887)
.++++|++|++++|..+++ ..+|..++++++|++|+ ++.+ .+... ....+..++ +|+.|+++++
T Consensus 139 ~~~~~L~~L~L~~~~~l~~--------~~l~~~~~~~~~L~~L~----l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSE--------FALQTLLSSCSRLDELN----LSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TTCTTCSEEECTTCBSCCH--------HHHHHHHHHCTTCCEEE----CCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred hcCCCCCEEECCCCCCCCH--------HHHHHHHhcCCCCCEEc----CCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 8888999999988732221 12444467788888888 6666 55543 456678888 8998888874
Q ss_pred -cCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeeccCCCCh---hhhcCCCcceeEEEecccC
Q 048733 725 -NGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNMKKLPD---WILKLKNLIGSRLILSGLT 800 (887)
Q Consensus 725 -~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~---~~~~l~~L~~L~L~~~~l~ 800 (887)
......++..+.++++|+.|++++|...+...+..+...+ +|+.|++++|....+. .+..+++|+.|+|++| +.
T Consensus 207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC-CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 3444667777888889999998887632222234444444 8899999887533333 4667888999999888 55
Q ss_pred CcCcCcCc-ccceeeeCcCC
Q 048733 801 EDPISWFP-KLRKLVLLNFE 819 (887)
Q Consensus 801 ~~~~~~~~-~L~~L~l~~~~ 819 (887)
...+..+. +|+.|++.++.
T Consensus 285 ~~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 285 DGTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp TTCHHHHHHHSTTSEESCCC
T ss_pred HHHHHHHHhhCcceEEeccc
Confidence 54444443 47777776544
No 84
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.47 E-value=1.1e-14 Score=170.96 Aligned_cols=154 Identities=15% Similarity=0.211 Sum_probs=87.5
Q ss_pred ccccccceeEEeccCChhHHHHHHhcccCCcEEEEeec-----CCccc----cccCcccccccccceeEEeeccC-CCCh
Q 048733 712 MLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMK-----SKEEI----LDLQSLSSPPQHLQYLSLRGNMK-KLPD 781 (887)
Q Consensus 712 ~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~-----~~~~~----~~l~~l~~~~~~L~~L~L~~~~~-~lp~ 781 (887)
.+++|+.|.+..+......+......+++|+.|++..+ ...+. ..+..+....++|+.|+|+++.. ..+.
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~ 449 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFE 449 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHH
Confidence 36666666555444444433333345677777777722 11110 01111122223788888866432 1222
Q ss_pred hhhc-CCCcceeEEEecccCCcCc----CcCcccceeeeCcCCCceeE--EEcCCCccCccEEEEccCCCCCcccccc-c
Q 048733 782 WILK-LKNLIGSRLILSGLTEDPI----SWFPKLRKLVLLNFEAVKSV--IIEKGAMPDIRELWIGPCPLLMEIPIGI-D 853 (887)
Q Consensus 782 ~~~~-l~~L~~L~L~~~~l~~~~~----~~~~~L~~L~l~~~~~l~~~--~~~~~~lp~L~~L~l~~c~~l~~lp~~~-~ 853 (887)
.+.. +++|+.|+|++|.++...+ ..+++|+.|++.+|.. ... ......+|+|+.|++++|+....-...+ .
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 528 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ 528 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHH
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHH
Confidence 3333 7889999999888765433 3578999999998875 322 1123458899999999998522211222 4
Q ss_pred cCCCCCEEEEEec
Q 048733 854 HLRNLELLTFHDM 866 (887)
Q Consensus 854 ~l~~L~~L~l~~c 866 (887)
.+|+|+...+...
T Consensus 529 ~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 529 KMPKLNVEVIDER 541 (594)
T ss_dssp HCTTEEEEEECSS
T ss_pred hCCCCEEEEecCC
Confidence 5677766555544
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.47 E-value=5.7e-14 Score=149.45 Aligned_cols=195 Identities=21% Similarity=0.261 Sum_probs=129.6
Q ss_pred CCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhh
Q 048733 570 KDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIR 649 (887)
Q Consensus 570 ~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~ 649 (887)
.++++++|.+.++.... ++ .+..+++|++|+|++|.+..+|. +..+++|++|++++|. +..+| .+.
T Consensus 39 ~l~~L~~L~l~~~~i~~---l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~--------l~~~~-~~~ 104 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT---IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP--------LKNVS-AIA 104 (308)
T ss_dssp HHHTCCEEECTTSCCCC---CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC--------CSCCG-GGT
T ss_pred HcCCcCEEEeeCCCccC---ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc--------CCCch-hhc
Confidence 46788888887775421 22 46778888888888888887776 8888888888887753 55655 577
Q ss_pred cccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChh
Q 048733 650 NLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGR 729 (887)
Q Consensus 650 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 729 (887)
++++|++|++++| ....+|. ++.+++|+.|. ++.+.+..... +..+++|+.|+++++....
T Consensus 105 ~l~~L~~L~l~~n-----------~l~~~~~-l~~l~~L~~L~----l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~- 165 (308)
T 1h6u_A 105 GLQSIKTLDLTST-----------QITDVTP-LAGLSNLQVLY----LDLNQITNISP--LAGLTNLQYLSIGNAQVSD- 165 (308)
T ss_dssp TCTTCCEEECTTS-----------CCCCCGG-GTTCTTCCEEE----CCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-
T ss_pred CCCCCCEEECCCC-----------CCCCchh-hcCCCCCCEEE----CCCCccCcCcc--ccCCCCccEEEccCCcCCC-
Confidence 8888888888887 2333443 67777888777 55555543322 6777778877777643222
Q ss_pred HHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcCc
Q 048733 730 DLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDPI 804 (887)
Q Consensus 730 ~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~ 804 (887)
++. +.++++|+.|++++|...+... +...+ +|+.|+|++|. ..++ .+..+++|+.|+|++|.++..+.
T Consensus 166 -~~~-l~~l~~L~~L~l~~n~l~~~~~---l~~l~-~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 166 -LTP-LANLSKLTTLKADDNKISDISP---LASLP-NLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp -CGG-GTTCTTCCEEECCSSCCCCCGG---GGGCT-TCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred -Chh-hcCCCCCCEEECCCCccCcChh---hcCCC-CCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCe
Confidence 222 6677778888877775544322 33333 77777777764 4454 36677777888887777765443
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.45 E-value=1.8e-13 Score=145.59 Aligned_cols=190 Identities=19% Similarity=0.257 Sum_probs=138.8
Q ss_pred cCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchh
Q 048733 594 IANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTE 673 (887)
Q Consensus 594 ~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 673 (887)
+..+++|+.|++++|.+..+| .+..+++|++|++++| .+..+|. +.++++|++|++++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n--------~i~~~~~-~~~l~~L~~L~L~~n----------- 95 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN--------QITDLAP-LKNLTKITELELSGN----------- 95 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS--------CCCCCGG-GTTCCSCCEEECCSC-----------
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC--------cCCCChh-HccCCCCCEEEccCC-----------
Confidence 346788889999999888877 6888888888888765 4677776 888899999999887
Q ss_pred hhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCcc
Q 048733 674 AAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEE 753 (887)
Q Consensus 674 ~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~ 753 (887)
....+| .++.+++|+.|. ++.+.+.... .+..+++|+.|+++++..... + .+.++++|+.|++++|....
T Consensus 96 ~l~~~~-~~~~l~~L~~L~----l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 96 PLKNVS-AIAGLQSIKTLD----LTSTQITDVT--PLAGLSNLQVLYLDLNQITNI--S-PLAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp CCSCCG-GGTTCTTCCEEE----CTTSCCCCCG--GGTTCTTCCEEECCSSCCCCC--G-GGGGCTTCCEEECCSSCCCC
T ss_pred cCCCch-hhcCCCCCCEEE----CCCCCCCCch--hhcCCCCCCEEECCCCccCcC--c-cccCCCCccEEEccCCcCCC
Confidence 233333 577888888888 6666664432 378888899888887433221 1 17788889999998876554
Q ss_pred ccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCc-CcCcCcccceeeeCcCC
Q 048733 754 ILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTED-PISWFPKLRKLVLLNFE 819 (887)
Q Consensus 754 ~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~-~~~~~~~L~~L~l~~~~ 819 (887)
.. .+...+ +|+.|++++|. ..+|. +..+++|+.|+|++|.+... ++..+++|+.|++.+++
T Consensus 166 ~~---~l~~l~-~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 166 LT---PLANLS-KLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CG---GGTTCT-TCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred Ch---hhcCCC-CCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 32 244444 88999998874 45553 77888999999999887664 45578888888888765
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.45 E-value=5.8e-14 Score=147.18 Aligned_cols=212 Identities=17% Similarity=0.204 Sum_probs=142.5
Q ss_pred EEEecCCCCCCCccccccccccceeecCCCceeeecCccccccch-hhhcccccCeeeecccccccccccchhhhhhccC
Q 048733 602 VLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPE-EIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHR 680 (887)
Q Consensus 602 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~ 680 (887)
..+..+..+..+|..+. .+|++|+++ +|.+..+|. .+.++++|++|++++| ....++.
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls--------~n~l~~~~~~~~~~l~~L~~L~l~~n-----------~l~~~~~ 69 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLS--------FNPLRHLGSYSFFSFPELQVLDLSRC-----------EIQTIED 69 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECT--------TCCCCEECTTTTTTCTTCSEEECTTC-----------CCCEECT
T ss_pred eEEecCCCccccCCCCC--CCccEEECC--------CCcccccCHhHhccccCCcEEECCCC-----------cCCccCH
Confidence 45566667778887654 467766665 468888776 7788999999999987 3333333
Q ss_pred -CccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCc
Q 048733 681 -GFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQS 759 (887)
Q Consensus 681 -~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~ 759 (887)
.++++++|++|+ ++.+.+....+ ..+.++++|+.|++.+|....... ..
T Consensus 70 ~~~~~l~~L~~L~----L~~n~l~~~~~-------------------------~~~~~l~~L~~L~l~~n~l~~~~~-~~ 119 (276)
T 2z62_A 70 GAYQSLSHLSTLI----LTGNPIQSLAL-------------------------GAFSGLSSLQKLVAVETNLASLEN-FP 119 (276)
T ss_dssp TTTTTCTTCCEEE----CTTCCCCEECT-------------------------TTTTTCTTCCEEECTTSCCCCSTT-CC
T ss_pred HHccCCcCCCEEE----CCCCccCccCh-------------------------hhhcCCccccEEECCCCCccccCc-hh
Confidence 456666666666 44433322211 234556677777776664433221 12
Q ss_pred ccccccccceeEEeecc-C--CCChhhhcCCCcceeEEEecccCCcCcC---cCcccc----eeeeCcCCCceeEEEcCC
Q 048733 760 LSSPPQHLQYLSLRGNM-K--KLPDWILKLKNLIGSRLILSGLTEDPIS---WFPKLR----KLVLLNFEAVKSVIIEKG 829 (887)
Q Consensus 760 l~~~~~~L~~L~L~~~~-~--~lp~~~~~l~~L~~L~L~~~~l~~~~~~---~~~~L~----~L~l~~~~~l~~~~~~~~ 829 (887)
+...+ +|+.|++++|. . .+|.++..+++|+.|+|++|.+...+.. .+++|+ .|++.++. +..++....
T Consensus 120 ~~~l~-~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~ 197 (276)
T 2z62_A 120 IGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAF 197 (276)
T ss_dssp CTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC-CCEECTTSS
T ss_pred cccCC-CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc-ccccCcccc
Confidence 33334 88899998864 3 3688899999999999999988776544 344555 67777654 556665555
Q ss_pred CccCccEEEEccCCCCCccccc-cccCCCCCEEEEEech
Q 048733 830 AMPDIRELWIGPCPLLMEIPIG-IDHLRNLELLTFHDMS 867 (887)
Q Consensus 830 ~lp~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~ 867 (887)
..++|+.|++++|. ++.+|.. +..+++|++|++++||
T Consensus 198 ~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 198 KEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 56689999999997 6666654 5889999999999776
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.45 E-value=4e-14 Score=148.41 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=40.5
Q ss_pred ceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCcc-ccccccccceeecCCCceeeecCccccccc-hhhhc
Q 048733 573 KVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPE-GVGNLFNLHLLNARNTKILDLAHTFVSELP-EEIRN 650 (887)
Q Consensus 573 ~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp-~~i~~ 650 (887)
++++|.+.++.. ..+.+..|.++++|++|+|++|.+..++. .+.++++|++|++++|. +..+| ..+.+
T Consensus 29 ~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~ 98 (276)
T 2z62_A 29 STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--------IQSLALGAFSG 98 (276)
T ss_dssp TCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--------CCEECTTTTTT
T ss_pred CccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc--------cCccChhhhcC
Confidence 455555555443 12223345555556666666555554432 45555555555555432 44333 33455
Q ss_pred ccccCeeeeccc
Q 048733 651 LKKLRSLIVFHY 662 (887)
Q Consensus 651 l~~L~~L~l~~~ 662 (887)
+++|++|++++|
T Consensus 99 l~~L~~L~l~~n 110 (276)
T 2z62_A 99 LSSLQKLVAVET 110 (276)
T ss_dssp CTTCCEEECTTS
T ss_pred CccccEEECCCC
Confidence 555666655554
No 89
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=1.3e-11 Score=135.93 Aligned_cols=298 Identities=16% Similarity=0.070 Sum_probs=183.2
Q ss_pred cCccccchhcHHHHHHHHhc--CCCCcEEEEEEccCCCCHHHHHHHHhcccCcc----CC--CceeEEEEeCCCC-CHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLN--GRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLK----TH--FSCRAWVTVGKEY-NKND 240 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~--F~~~~wv~v~~~~-~~~~ 240 (887)
+..++||+.+++++.+++.. .....+.+.|+|++|+||||||+.+++..... .. ....+|++..... +...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 36799999999999988765 22335689999999999999999999852111 11 2346788776666 8888
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChhH--HHHH-HHhcC
Q 048733 241 LLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKIDF--WRDV-EHALL 317 (887)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l-~~~l~ 317 (887)
++..++.++.+... .....+...+...+.+.+..++.+|||||++.... +... ...+.
T Consensus 99 ~~~~l~~~l~~~~~-------------------~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~ 159 (384)
T 2qby_B 99 VLSSLAGKLTGFSV-------------------PKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLL 159 (384)
T ss_dssp HHHHHHHHHHCSCC-------------------CSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-------------------CCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHh
Confidence 88898888753211 01122346677788888887767999999976532 2233 33333
Q ss_pred CCCCCcEEEEEccchhHHh----hhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhC---
Q 048733 318 DNKKCSRIIVTTRHMNVAK----FCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCG--- 390 (887)
Q Consensus 318 ~~~~gs~iivTtR~~~v~~----~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~--- 390 (887)
....+..||+||+...... ..... -...+.+++++.++..+++...+.......... .+..+.|++.++
T Consensus 160 ~~~~~~~iI~~t~~~~~~~~l~~~l~sr-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~ 235 (384)
T 2qby_B 160 RSDANISVIMISNDINVRDYMEPRVLSS-LGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEH 235 (384)
T ss_dssp TSSSCEEEEEECSSTTTTTTSCHHHHHT-CCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTC
T ss_pred cCCcceEEEEEECCCchHhhhCHHHHhc-CCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhcc
Confidence 2226788899988753211 11111 014899999999999999998753110001112 345566777777
Q ss_pred CCch-HHHHHhhh--hcC--CCCCHHHHHHHHHHhccccCCCCCccchHHHHhhcccCCChhhHHHHhhhcccCCC-ccc
Q 048733 391 GLPL-AIVAVGGL--LST--KNRIVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYYDLPHHLKSCLLYFGLFPES-CKI 464 (887)
Q Consensus 391 G~PL-ai~~~~~~--l~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~Lp~~~k~cf~~~s~fp~~-~~i 464 (887)
|.|. |+..+-.. ++. ..-+.+.+..+++... ...+..++..|+++.+..+..++. ... -.+
T Consensus 236 G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~------------~~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~ 302 (384)
T 2qby_B 236 GDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE------------QERLIEAVKALPFHYKLALRSLIE-SEDVMSA 302 (384)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH------------HHHHHHHHHSSCHHHHHHHHHHHT-CCBHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh------------cchHHHHHHcCCHHHHHHHHHHHH-hcccChH
Confidence 8887 33332222 221 2235677777766542 134556678899988888877776 111 011
Q ss_pred ChhHHHHHHHHcCccccCCCCCHHHHHHHHHHHHhhcCCeeeeec
Q 048733 465 NRGRLIRLWIAEGLVQYSKRFTSEQVAAEYLDELIDRSLVQVSNR 509 (887)
Q Consensus 465 ~~~~li~~w~a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~ 509 (887)
. .......-..| + .........+++..|..++++.....
T Consensus 303 ~-~~~~~~~~~~g-~----~~~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 303 H-KMYTDLCNKFK-Q----KPLSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp H-HHHHHHHHHTT-C----CCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred H-HHHHHHHHHcC-C----CCCCHHHHHHHHHHHHhCCCEEEEec
Confidence 0 01111111222 1 11223557788999999999998654
No 90
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.41 E-value=1.9e-11 Score=134.80 Aligned_cols=299 Identities=13% Similarity=0.067 Sum_probs=182.3
Q ss_pred cCccccchhcHHHHHHHHhcC--CCCcEEEEEEccCCCCHHHHHHHHhcccCcc----CCCceeEEEEeCCCCCHHHHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNG--RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLK----THFSCRAWVTVGKEYNKNDLLR 243 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~ 243 (887)
+..++||+.+++++..++... ......+.|+|++|+||||||+.+++..... +.-...+|++.....+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 367999999999999988553 3345678899999999999999999852111 1112457888888888889999
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhC--CCceEEEEeccCChhH----HHHHHHhc-
Q 048733 244 TIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLK--DKSYMVVLDDVWKIDF----WRDVEHAL- 316 (887)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~~----~~~l~~~l- 316 (887)
.++.+++.... ....+..++...+.+.+. +++.+|||||++.... .+.+...+
T Consensus 98 ~l~~~l~~~~~--------------------~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~ 157 (387)
T 2v1u_A 98 AIAEAVGVRVP--------------------FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITR 157 (387)
T ss_dssp HHHHHHSCCCC--------------------SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHH
T ss_pred HHHHHhCCCCC--------------------CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhh
Confidence 99988854211 112245666777777773 4688999999976532 22232222
Q ss_pred --CCC--CCCcEEEEEccchhHHh----hhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHH
Q 048733 317 --LDN--KKCSRIIVTTRHMNVAK----FCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAK 388 (887)
Q Consensus 317 --~~~--~~gs~iivTtR~~~v~~----~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~ 388 (887)
... ..+..+|.||+...... ..........+.+++++.++..+++.+.+.....+.... .++.+.|++.
T Consensus 158 ~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~ 234 (387)
T 2v1u_A 158 INQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAAL 234 (387)
T ss_dssp GGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHH
T ss_pred chhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHH
Confidence 111 44567777877652211 111111114789999999999999998753100001111 2455667777
Q ss_pred hC---CCchHH-HHHhhhh--c---C-CCCCHHHHHHHHHHhccccCCCCCccchHHHHhhcccCCChhhHHHHhhhc-c
Q 048733 389 CG---GLPLAI-VAVGGLL--S---T-KNRIVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYYDLPHHLKSCLLYFG-L 457 (887)
Q Consensus 389 c~---G~PLai-~~~~~~l--~---~-~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~Lp~~~k~cf~~~s-~ 457 (887)
++ |.|-.+ ..+.... . . ..-+.+.+..++.... ...+.-++..||.+.+..+..++ +
T Consensus 235 ~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~------------~~~~~~~~~~l~~~~~~~l~a~~~~ 302 (387)
T 2v1u_A 235 AAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE------------RDRVSEVVRTLPLHAKLVLLSIMML 302 (387)
T ss_dssp HHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH------------HHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh------------hchHHHHHHcCCHHHHHHHHHHHHH
Confidence 77 999432 2222211 1 1 2224666666665432 12355567889999888877776 4
Q ss_pred cCCCcccChhHHHHHHHH----cCccccCCCCCHHHHHHHHHHHHhhcCCeeeee
Q 048733 458 FPESCKINRGRLIRLWIA----EGLVQYSKRFTSEQVAAEYLDELIDRSLVQVSN 508 (887)
Q Consensus 458 fp~~~~i~~~~li~~w~a----~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 508 (887)
+.....+....+.+.... .| + .......+..+++.|...|++....
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 303 EDGGRPASTGEIYERYKELTSTLG-L----EHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp SSSSCCEEHHHHHHHHHHHHHHTT-C----CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hcCCCCCcHHHHHHHHHHHHHhcC-C----CCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 432234444544443322 22 1 1122456788999999999999864
No 91
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.41 E-value=4.9e-11 Score=131.63 Aligned_cols=322 Identities=16% Similarity=0.127 Sum_probs=193.0
Q ss_pred CccccchhcHHHHHHHHhcC----CCCcEEEEEEccCCCCHHHHHHHHhcccCccCC-CceeEEEEeCCCCCHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNG----RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTH-FSCRAWVTVGKEYNKNDLLRTI 245 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~v~~~~~~~~~~~~i 245 (887)
+.++||+.+++++.+++... .+..+.+.|+|++|+||||||+.+++. .... -...+|++.+...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 67999999999999988762 222348899999999999999999985 2222 1245678877778888888888
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhC--CCceEEEEeccCCh--hHHHHHHHhcCCCC-
Q 048733 246 IKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLK--DKSYMVVLDDVWKI--DFWRDVEHALLDNK- 320 (887)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~--~~~~~l~~~l~~~~- 320 (887)
+..++.... ....+...+...+...+. +++.+||||+++.. +....+...+....
T Consensus 95 ~~~l~~~~~--------------------~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 95 ARSLNIPFP--------------------RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADK 154 (389)
T ss_dssp HHHTTCCCC--------------------SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHH
T ss_pred HHHhCccCC--------------------CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCC
Confidence 887743211 112244566666666663 56889999999654 34555555543321
Q ss_pred ---CCcEEEEEccchhHHhhhcc----CCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHh----
Q 048733 321 ---KCSRIIVTTRHMNVAKFCKL----SSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKC---- 389 (887)
Q Consensus 321 ---~gs~iivTtR~~~v~~~~~~----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c---- 389 (887)
.+..||++|+.......... ......+.+++++.++..+++...+...... ..-..+....|++.+
T Consensus 155 ~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 231 (389)
T 1fnn_A 155 LGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE---GSYSEDILQMIADITGAQT 231 (389)
T ss_dssp HSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT---TSSCHHHHHHHHHHHSBSS
T ss_pred CCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHhhcc
Confidence 36678888776543222110 0011379999999999999998875321000 111246778889999
Q ss_pred -----CCCchHHHHHhhhhc------C-CCCCHHHHHHHHHHhccccCCCCCccchHHHHhhcccCCChhhHHHHhhhcc
Q 048733 390 -----GGLPLAIVAVGGLLS------T-KNRIVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYYDLPHHLKSCLLYFGL 457 (887)
Q Consensus 390 -----~G~PLai~~~~~~l~------~-~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~Lp~~~k~cf~~~s~ 457 (887)
+|.|-.+..+..... . ..-+.+....+...... ..+ .-.+..||.+.+.++..++.
T Consensus 232 ~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~--------~~~----~~~l~~l~~~~~~~L~~l~~ 299 (389)
T 1fnn_A 232 PLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF--------GIS----EEVLIGLPLHEKLFLLAIVR 299 (389)
T ss_dssp TTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC--------CCC----HHHHHHSCHHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh--------hhH----HHHHHcCCHHHHHHHHHHHH
Confidence 788754443332211 1 11233444444333221 111 22245688888888888876
Q ss_pred cC---CCcccChhHHHHHHHH----cCccccCCCCCHHHHHHHHHHHHhhcCCeeeeec----CCCCceeEEE----eCH
Q 048733 458 FP---ESCKINRGRLIRLWIA----EGLVQYSKRFTSEQVAAEYLDELIDRSLVQVSNR----EIPGRAIICH----VHD 522 (887)
Q Consensus 458 fp---~~~~i~~~~li~~w~a----~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~----~~~~~~~~~~----~Hd 522 (887)
+. .+..+....+...+.. .|.. .........++++|..++++..... +..|+...++ .|+
T Consensus 300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~ 374 (389)
T 1fnn_A 300 SLKISHTPYITFGDAEESYKIVCEEYGER-----PRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLD 374 (389)
T ss_dssp HHHHHCSSCEEHHHHHHHHHHHHHHTTCC-----CCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHH
T ss_pred HHhhccCCCccHHHHHHHHHHHHHHcCCC-----CCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHH
Confidence 54 2224555666555533 2211 1123457789999999999998654 2223333333 446
Q ss_pred HHHHHHHHhhhh
Q 048733 523 LMHEIIIRKTEE 534 (887)
Q Consensus 523 lv~~~~~~~~~~ 534 (887)
++..+...+..+
T Consensus 375 v~~~~~~~~~~~ 386 (389)
T 1fnn_A 375 TLEAVITKLIKE 386 (389)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666555544433
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.40 E-value=9.7e-14 Score=144.96 Aligned_cols=85 Identities=22% Similarity=0.117 Sum_probs=50.9
Q ss_pred ccceeEEeecc-CCCC-hhhhcCCCcceeEEEecccCCcCc---CcCcccceeeeCcCCCceeEEEcCCCccCccEEEEc
Q 048733 766 HLQYLSLRGNM-KKLP-DWILKLKNLIGSRLILSGLTEDPI---SWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIG 840 (887)
Q Consensus 766 ~L~~L~L~~~~-~~lp-~~~~~l~~L~~L~L~~~~l~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~ 840 (887)
+|+.|++++|. ..+| ..+..+++|+.|+|++|.+...+. ..+++|+.|++.+++- .+.+|+|+.|.++
T Consensus 158 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~l~~~ 230 (272)
T 3rfs_A 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEW 230 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB-------CCCTTTTHHHHHH
T ss_pred cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc-------cccCcHHHHHHHH
Confidence 56666666542 3333 334566667777777766665442 3456666666666541 2456777777777
Q ss_pred cCCCCCccccccccCCC
Q 048733 841 PCPLLMEIPIGIDHLRN 857 (887)
Q Consensus 841 ~c~~l~~lp~~~~~l~~ 857 (887)
.|.....+|..+..++.
T Consensus 231 ~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 231 INKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHHTGGGBBCTTSCBCG
T ss_pred HHhCCCcccCcccccCC
Confidence 77666667776665544
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.40 E-value=1.5e-13 Score=140.68 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=45.2
Q ss_pred HhcccCCc-EEEEeecCCccccccCcccccccccceeEEeec--cCCCC-hhhhcC-CCcceeEEEecccCCcCcCcCcc
Q 048733 735 IANLENVE-TLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGN--MKKLP-DWILKL-KNLIGSRLILSGLTEDPISWFPK 809 (887)
Q Consensus 735 l~~~~~L~-~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~--~~~lp-~~~~~l-~~L~~L~L~~~~l~~~~~~~~~~ 809 (887)
+.++++|+ .|++++|..... ....+.. + +|+.|++++| ...+| ..+..+ ++|+.|+|++|.+...+...|++
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~i-~~~~~~~-~-~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~ 227 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTSV-QGYAFNG-T-KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCEE-CTTTTTT-C-EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTT
T ss_pred ccchhcceeEEEcCCCCCccc-CHhhcCC-C-CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhcc
Confidence 45566666 777666544322 1111222 2 6777777665 34443 345556 66777777776666555555666
Q ss_pred cceeeeCcC
Q 048733 810 LRKLVLLNF 818 (887)
Q Consensus 810 L~~L~l~~~ 818 (887)
|+.|.+.++
T Consensus 228 L~~L~l~~~ 236 (239)
T 2xwt_C 228 LKELIARNT 236 (239)
T ss_dssp CSEEECTTC
T ss_pred CceeeccCc
Confidence 666666554
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=7.9e-13 Score=140.96 Aligned_cols=205 Identities=18% Similarity=0.178 Sum_probs=121.4
Q ss_pred CCCceeEEEeecCCCCCccccccc--cCCCceeEEEEecCCCCC-CCcccc--ccccccceeecCCCceeeecCccccc-
Q 048733 570 KDSKVRSVILFNVDKLPDSFVKSC--IANFKLMKVLDLEDSPIN-YLPEGV--GNLFNLHLLNARNTKILDLAHTFVSE- 643 (887)
Q Consensus 570 ~~~~lrsL~~~~~~~~~~~~~~~~--~~~~~~Lr~L~L~~~~l~-~lp~~i--~~L~~L~~L~L~~~~~Ldl~~~~l~~- 643 (887)
...+++.+.+.+... ++..+... +..++.|+.|+|++|.+. ..|..+ +.+++|++|+|++|. +..
T Consensus 62 ~~~~l~~l~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~--------i~~~ 132 (310)
T 4glp_A 62 KALRVRRLTVGAAQV-PAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS--------WATG 132 (310)
T ss_dssp SSCCCCEEEECSCCC-BHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC--------CSST
T ss_pred hhcceeEEEEeCCcC-CHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc--------ccch
Confidence 344566676665543 11111111 123456999999999887 556666 889999998888764 332
Q ss_pred ---cc-hhhhcccccCeeeecccccccccccchhhhhhcc-CCccccccccccccccccCceecchH--HHHH--hhccc
Q 048733 644 ---LP-EEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIH-RGFGSLRGLQSLRGLLALPTIEADSQ--VLKE--LMMLR 714 (887)
Q Consensus 644 ---lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p-~~i~~L~~L~~L~~~~~l~~~~~~~~--~~~~--l~~l~ 714 (887)
++ ..+..+++|++|++++| ....++ ..++.+++|++|+ ++.+.+... .... ++.++
T Consensus 133 ~~~~~~~~~~~~~~L~~L~Ls~n-----------~l~~~~~~~~~~l~~L~~L~----Ls~N~l~~~~~~~~~~~~~~l~ 197 (310)
T 4glp_A 133 RSWLAELQQWLKPGLKVLSIAQA-----------HSPAFSCEQVRAFPALTSLD----LSDNPGLGERGLMAALCPHKFP 197 (310)
T ss_dssp TSSHHHHHTTBCSCCCEEEEECC-----------SSCCCCTTSCCCCTTCCEEE----CCSCTTCHHHHHHTTSCTTSSC
T ss_pred hhhhHHHHhhhccCCCEEEeeCC-----------CcchhhHHHhccCCCCCEEE----CCCCCCccchhhhHHHhhhcCC
Confidence 12 34557889999999987 333333 4677888888888 666654332 1111 25778
Q ss_pred cccceeEEeccCCh-hHHHH-HHhcccCCcEEEEeecCCccccc--cCcccccccccceeEEeecc-CCCChhhhcCCCc
Q 048733 715 QLNMLSIRRQNGNG-RDLCA-LIANLENVETLGVLMKSKEEILD--LQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNL 789 (887)
Q Consensus 715 ~L~~L~l~~~~~~~-~~l~~-~l~~~~~L~~L~l~~~~~~~~~~--l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L 789 (887)
+|+.|+++++.... ...+. .+.++++|++|++++|...+..+ +..+..++ +|+.|+|++|. ..+|.++. ++|
T Consensus 198 ~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~-~L~~L~Ls~N~l~~lp~~~~--~~L 274 (310)
T 4glp_A 198 AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS-ALNSLNLSFAGLEQVPKGLP--AKL 274 (310)
T ss_dssp CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT-TCCCEECCSSCCCSCCSCCC--SCC
T ss_pred CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC-cCCEEECCCCCCCchhhhhc--CCC
Confidence 88888888643321 22222 24667888888888775544311 12222122 66666666653 45555442 566
Q ss_pred ceeEEEecccCC
Q 048733 790 IGSRLILSGLTE 801 (887)
Q Consensus 790 ~~L~L~~~~l~~ 801 (887)
+.|+|++|.++.
T Consensus 275 ~~L~Ls~N~l~~ 286 (310)
T 4glp_A 275 RVLDLSSNRLNR 286 (310)
T ss_dssp SCEECCSCCCCS
T ss_pred CEEECCCCcCCC
Confidence 666666665544
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=5.2e-13 Score=140.69 Aligned_cols=180 Identities=22% Similarity=0.252 Sum_probs=101.3
Q ss_pred CCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchhhh
Q 048733 596 NFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAA 675 (887)
Q Consensus 596 ~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 675 (887)
.+++|+.|++++|.+..+| .+..+++|++|++++| .+..+|. +.++++|++|++++| ..
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n--------~l~~~~~-l~~l~~L~~L~l~~n-----------~l 102 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN--------KLTDIKP-LANLKNLGWLFLDEN-----------KV 102 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS--------CCCCCGG-GTTCTTCCEEECCSS-----------CC
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC--------ccCCCcc-cccCCCCCEEECCCC-----------cC
Confidence 3444445555555444443 2444444444444433 2333333 444455555555444 11
Q ss_pred hhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCcccc
Q 048733 676 AKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEIL 755 (887)
Q Consensus 676 ~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~ 755 (887)
..+| .++.+++|++|+ ++.+.+... ..+..+++|+.|+++++..... ..+.++++|+.|++++|...+..
T Consensus 103 ~~~~-~l~~l~~L~~L~----L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 103 KDLS-SLKDLKKLKSLS----LEHNGISDI--NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp CCGG-GGTTCTTCCEEE----CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCCh-hhccCCCCCEEE----CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccch
Confidence 1222 244444444444 333333221 2356667777777776433221 45677888999999888655433
Q ss_pred ccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcCcCcCcccc
Q 048733 756 DLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDPISWFPKLR 811 (887)
Q Consensus 756 ~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~~~L~ 811 (887)
. +...+ +|+.|++++|. ..+| .+..+++|+.|+|++|.+...+...++.+.
T Consensus 173 ~---l~~l~-~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 224 (291)
T 1h6t_A 173 P---LAGLT-KLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLV 224 (291)
T ss_dssp G---GTTCT-TCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEECCCEECCSEEE
T ss_pred h---hcCCC-ccCEEECCCCcCCCCh-hhccCCCCCEEECcCCcccCCccccccccE
Confidence 2 44444 89999998874 5666 478899999999999998776665444433
No 96
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.37 E-value=5.6e-13 Score=139.04 Aligned_cols=57 Identities=32% Similarity=0.432 Sum_probs=34.9
Q ss_pred ceeEEEEecCCCCCCCcc-ccccccccceeecCCCceeeecCccccccchhh-hcccccCeeeeccc
Q 048733 598 KLMKVLDLEDSPINYLPE-GVGNLFNLHLLNARNTKILDLAHTFVSELPEEI-RNLKKLRSLIVFHY 662 (887)
Q Consensus 598 ~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i-~~l~~L~~L~l~~~ 662 (887)
+.|+.|+|++|.+..+|. .+.++++|++|++++| .+..+|..+ .++++|++|++++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--------~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN--------KLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS--------CCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC--------ccCeeChhhhcCCCCCCEEECCCC
Confidence 356666676666665553 5666666666666554 355555544 45666666666665
No 97
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.37 E-value=7.1e-14 Score=145.98 Aligned_cols=208 Identities=18% Similarity=0.176 Sum_probs=139.4
Q ss_pred cCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchh
Q 048733 594 IANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTE 673 (887)
Q Consensus 594 ~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 673 (887)
...++.|+.|++++|.+..++ .+..+++|++|++++|. +..+| .+.++++|++|++++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~--------l~~~~-~l~~l~~L~~L~L~~n----------- 95 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK--------LHDIS-ALKELTNLTYLILTGN----------- 95 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC--------CCCCG-GGTTCTTCCEEECTTS-----------
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC--------CCCch-hhcCCCCCCEEECCCC-----------
Confidence 456788999999999988776 58889999999888764 55554 6788999999999987
Q ss_pred hhhhccCC-ccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCc
Q 048733 674 AAAKIHRG-FGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKE 752 (887)
Q Consensus 674 ~~~~~p~~-i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 752 (887)
....+|.. ++.+++|++|+ ++.+.+.......++.+++|+.|+++++.... ..+..+.++++|+.|++++|...
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~----L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELV----LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEE----CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC
T ss_pred ccCccChhHhcCCcCCCEEE----CCCCcCCccCHHHhccCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCCCcC
Confidence 34444443 67788888887 66666655545556777888888887643221 11233566778888888877554
Q ss_pred cccccCcccccccccceeEEeecc-CCC-ChhhhcCCCcceeEEEecccCCcCcCcCcccceeeeCcCCCceeEEEcCCC
Q 048733 753 EILDLQSLSSPPQHLQYLSLRGNM-KKL-PDWILKLKNLIGSRLILSGLTEDPISWFPKLRKLVLLNFEAVKSVIIEKGA 830 (887)
Q Consensus 753 ~~~~l~~l~~~~~~L~~L~L~~~~-~~l-p~~~~~l~~L~~L~L~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 830 (887)
.... ..+...+ +|+.|++++|. ..+ |..+..+++|+.|+|++|.+... +++|+.|.+..+.....+|...+.
T Consensus 171 ~~~~-~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 171 SLPE-GVFDKLT-QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCCT-TTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred ccCH-HHhcCCc-cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----CcHHHHHHHHHHhCCCcccCcccc
Confidence 3221 2233333 78888887763 333 34466778888888888776533 567777777766544556655555
Q ss_pred ccC
Q 048733 831 MPD 833 (887)
Q Consensus 831 lp~ 833 (887)
++.
T Consensus 245 ~~~ 247 (272)
T 3rfs_A 245 VAP 247 (272)
T ss_dssp BCG
T ss_pred cCC
Confidence 444
No 98
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.36 E-value=3.8e-13 Score=141.60 Aligned_cols=200 Identities=17% Similarity=0.066 Sum_probs=126.9
Q ss_pred CCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCC-ccccccccccceeecCCCceeeecCccccccchh
Q 048733 569 IKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYL-PEGVGNLFNLHLLNARNTKILDLAHTFVSELPEE 647 (887)
Q Consensus 569 ~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~ 647 (887)
..+++++++.+.++.. ..++..+ .+.|++|+|++|.+..+ |..+..+++|++|+|++|. +..+|..
T Consensus 7 ~~l~~l~~l~~~~~~l--~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~ 73 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNL--TALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE--------LTKLQVD 73 (290)
T ss_dssp ECSTTCCEEECTTSCC--SSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC--------CCEEECC
T ss_pred cccCCccEEECCCCCC--CcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc--------cCcccCC
Confidence 3566778888776654 2222222 25788889999988866 4668888888888888764 5566553
Q ss_pred hhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCC
Q 048733 648 IRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGN 727 (887)
Q Consensus 648 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 727 (887)
..+++|++|++++| ....+|..+..+++|+.|. ++.+.+....+..+..+++|+.|+++++...
T Consensus 74 -~~l~~L~~L~Ls~N-----------~l~~l~~~~~~l~~L~~L~----l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHN-----------QLQSLPLLGQTLPALTVLD----VSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp -SCCTTCCEEECCSS-----------CCSSCCCCTTTCTTCCEEE----CCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred -CCCCcCCEEECCCC-----------cCCcCchhhccCCCCCEEE----CCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 67888888888887 4556677777777787777 6666555444455666777777777653222
Q ss_pred hhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccC
Q 048733 728 GRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLT 800 (887)
Q Consensus 728 ~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~ 800 (887)
. ..+..+..+++|+.|++++|....... ..+...+ +|+.|+|++|. ..+|.++..+.+|+.|+|++|.+.
T Consensus 138 ~-~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~-~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 138 T-LPPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLE-NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp C-CCTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred c-cChhhcccccCCCEEECCCCcCCccCH-HHhcCcC-CCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 1 112234566777777777665443211 1222233 77777777653 567766666677777777776654
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=7e-13 Score=153.38 Aligned_cols=183 Identities=22% Similarity=0.248 Sum_probs=119.8
Q ss_pred CCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchhh
Q 048733 595 ANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEA 674 (887)
Q Consensus 595 ~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 674 (887)
..++.|+.|++++|.+..+| .+..|++|++|+|++| .+..+|. +.++++|++|+|++| .
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N--------~l~~~~~-l~~l~~L~~L~Ls~N-----------~ 98 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN--------KLTDIKP-LTNLKNLGWLFLDEN-----------K 98 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS--------CCCCCGG-GGGCTTCCEEECCSS-----------C
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC--------CCCCChh-hccCCCCCEEECcCC-----------C
Confidence 44556666666666666665 4666666666666654 3555554 666666777776665 2
Q ss_pred hhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccc
Q 048733 675 AAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEI 754 (887)
Q Consensus 675 ~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 754 (887)
+..+| .++.|++|+.|. ++.+.+.. +..+..|++|+.|+++.+..... ..+..+++|+.|+|++|.....
T Consensus 99 l~~l~-~l~~l~~L~~L~----Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 99 IKDLS-SLKDLKKLKSLS----LEHNGISD--INGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CCCCT-TSTTCTTCCEEE----CTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCC
T ss_pred CCCCh-hhccCCCCCEEE----ecCCCCCC--CccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCc
Confidence 22233 466666666666 54554433 23467788888888876433322 4677888999999998866554
Q ss_pred cccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcCcCcCccccee
Q 048733 755 LDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDPISWFPKLRKL 813 (887)
Q Consensus 755 ~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~~~L~~L 813 (887)
.. +...+ +|+.|+|++|. ..+| .+..|++|+.|+|++|.+...+...+++|..+
T Consensus 169 ~~---l~~l~-~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~ 223 (605)
T 1m9s_A 169 VP---LAGLT-KLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223 (605)
T ss_dssp GG---GTTCT-TCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCCCCCCSSCEEE
T ss_pred hh---hccCC-CCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCcccccccEEec
Confidence 33 44444 89999999874 5565 57889999999999999888776655554443
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.35 E-value=1.2e-13 Score=150.84 Aligned_cols=235 Identities=15% Similarity=0.114 Sum_probs=108.7
Q ss_pred cccCCCceeEEEEecCCCCCCCc-----ccccccc-ccceeecCCCceeeecCcccccc-chhhhcc-----cccCeeee
Q 048733 592 SCIANFKLMKVLDLEDSPINYLP-----EGVGNLF-NLHLLNARNTKILDLAHTFVSEL-PEEIRNL-----KKLRSLIV 659 (887)
Q Consensus 592 ~~~~~~~~Lr~L~L~~~~l~~lp-----~~i~~L~-~L~~L~L~~~~~Ldl~~~~l~~l-p~~i~~l-----~~L~~L~l 659 (887)
.++...++|++|+|++|.+...+ ..+.+++ +|++|+|++|. +... +..+..+ ++|++|++
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--------l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS--------LGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC--------GGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC--------CCHHHHHHHHHHHhccCCCccEEEC
Confidence 34444445666666666655443 3444555 56655555542 3322 2233332 55666666
Q ss_pred cccccccccccchhhhhhccCCcccc-ccccccccccccCceecchHHHHHh----hc-cccccceeEEeccC---ChhH
Q 048733 660 FHYKYITGSIIPTEAAAKIHRGFGSL-RGLQSLRGLLALPTIEADSQVLKEL----MM-LRQLNMLSIRRQNG---NGRD 730 (887)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~p~~i~~L-~~L~~L~~~~~l~~~~~~~~~~~~l----~~-l~~L~~L~l~~~~~---~~~~ 730 (887)
++|. +++.. ...+...+..+ ++|++|+ ++.+.+.......+ .. .++|+.|+++++.. ....
T Consensus 88 s~n~-l~~~~-----~~~l~~~l~~~~~~L~~L~----Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 88 SGNF-LSYKS-----SDELVKTLAAIPFTITVLD----LGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp CSSC-GGGSC-----HHHHHHHHHTSCTTCCEEE----CCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred cCCc-CChHH-----HHHHHHHHHhCCCCccEEE----CcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 6551 11100 00000112222 4555555 44544433333222 22 24666666664322 1234
Q ss_pred HHHHHhccc-CCcEEEEeecCCccccc--cC-cccccccccceeEEeecc-CC-----CChhhhc-CCCcceeEEEeccc
Q 048733 731 LCALIANLE-NVETLGVLMKSKEEILD--LQ-SLSSPPQHLQYLSLRGNM-KK-----LPDWILK-LKNLIGSRLILSGL 799 (887)
Q Consensus 731 l~~~l~~~~-~L~~L~l~~~~~~~~~~--l~-~l~~~~~~L~~L~L~~~~-~~-----lp~~~~~-l~~L~~L~L~~~~l 799 (887)
++..+...+ +|+.|++++|....... +. .+...+++|+.|+|++|. +. ++..+.. .++|+.|+|++|.+
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 445555554 66666666654432210 00 111121266666666652 22 3444444 24666666666666
Q ss_pred CCcCc-------CcCcccceeeeCcCC--C-----ceeEEEcCCCccCccEEEEccCCC
Q 048733 800 TEDPI-------SWFPKLRKLVLLNFE--A-----VKSVIIEKGAMPDIRELWIGPCPL 844 (887)
Q Consensus 800 ~~~~~-------~~~~~L~~L~l~~~~--~-----l~~~~~~~~~lp~L~~L~l~~c~~ 844 (887)
...+. ..+++|+.|++.+|. . +..++.....+++|+.|++++|+.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 55433 345666666666553 0 112222344566677777776663
No 101
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.35 E-value=6.6e-13 Score=139.73 Aligned_cols=194 Identities=20% Similarity=0.154 Sum_probs=130.7
Q ss_pred cccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhc-cCCcccccccccccccc
Q 048733 617 VGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKI-HRGFGSLRGLQSLRGLL 695 (887)
Q Consensus 617 i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-p~~i~~L~~L~~L~~~~ 695 (887)
++++++|+.+++++ +.+..+|..+. ++|++|++++| ....+ |..+..+++|+.|.
T Consensus 6 ~~~l~~l~~l~~~~--------~~l~~ip~~~~--~~l~~L~L~~N-----------~l~~~~~~~~~~l~~L~~L~--- 61 (290)
T 1p9a_G 6 VSKVASHLEVNCDK--------RNLTALPPDLP--KDTTILHLSEN-----------LLYTFSLATLMPYTRLTQLN--- 61 (290)
T ss_dssp EECSTTCCEEECTT--------SCCSSCCSCCC--TTCCEEECTTS-----------CCSEEEGGGGTTCTTCCEEE---
T ss_pred ccccCCccEEECCC--------CCCCcCCCCCC--CCCCEEEcCCC-----------cCCccCHHHhhcCCCCCEEE---
Confidence 55667777766654 57888887764 68888888887 22222 23455566666655
Q ss_pred ccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeec
Q 048733 696 ALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGN 775 (887)
Q Consensus 696 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 775 (887)
++.+.+... +. ...+++|+.|++++|...... ..+...+ +|+.|++++|
T Consensus 62 -L~~n~l~~~--------------------------~~-~~~l~~L~~L~Ls~N~l~~l~--~~~~~l~-~L~~L~l~~N 110 (290)
T 1p9a_G 62 -LDRAELTKL--------------------------QV-DGTLPVLGTLDLSHNQLQSLP--LLGQTLP-ALTVLDVSFN 110 (290)
T ss_dssp -CTTSCCCEE--------------------------EC-CSCCTTCCEEECCSSCCSSCC--CCTTTCT-TCCEEECCSS
T ss_pred -CCCCccCcc--------------------------cC-CCCCCcCCEEECCCCcCCcCc--hhhccCC-CCCEEECCCC
Confidence 333322110 00 135667777777776544321 1222333 7888888876
Q ss_pred c-CCCC-hhhhcCCCcceeEEEecccCCcCcC---cCcccceeeeCcCCCceeEEEc-CCCccCccEEEEccCCCCCccc
Q 048733 776 M-KKLP-DWILKLKNLIGSRLILSGLTEDPIS---WFPKLRKLVLLNFEAVKSVIIE-KGAMPDIRELWIGPCPLLMEIP 849 (887)
Q Consensus 776 ~-~~lp-~~~~~l~~L~~L~L~~~~l~~~~~~---~~~~L~~L~l~~~~~l~~~~~~-~~~lp~L~~L~l~~c~~l~~lp 849 (887)
. ..+| ..+..+++|+.|+|++|.+...+.. .+++|+.|++.++. +..++.. +..+++|+.|++++|. ++.+|
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip 188 (290)
T 1p9a_G 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS-LYTIP 188 (290)
T ss_dssp CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC-CCCCC
T ss_pred cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCc-CCccC
Confidence 4 4554 5677888899999988888776543 56788888888764 5566554 4668999999999887 77899
Q ss_pred cccccCCCCCEEEEEech
Q 048733 850 IGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 850 ~~~~~l~~L~~L~l~~c~ 867 (887)
.++..+++|+.|++++||
T Consensus 189 ~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTTCCCSEEECCSCC
T ss_pred hhhcccccCCeEEeCCCC
Confidence 988889999999999887
No 102
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.35 E-value=1.1e-12 Score=136.73 Aligned_cols=73 Identities=22% Similarity=0.350 Sum_probs=51.5
Q ss_pred eeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccch-hhhcccccCeeeecccccccccccchhhhhh
Q 048733 599 LMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPE-EIRNLKKLRSLIVFHYKYITGSIIPTEAAAK 677 (887)
Q Consensus 599 ~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 677 (887)
.++.++++++.++.+|..+. .+|++|+++ +|.+..+|. .+.++++|++|++++| ....
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~--------~n~l~~~~~~~~~~l~~L~~L~l~~n-----------~l~~ 75 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQ--------SNKLSSLPSKAFHRLTKLRLLYLNDN-----------KLQT 75 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECC--------SSCCSCCCTTSSSSCTTCCEEECCSS-----------CCSC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECc--------CCCCCeeCHHHhcCCCCCCEEECCCC-----------ccCe
Confidence 46789999999998887654 466666655 467888776 6778999999999887 3344
Q ss_pred ccCC-ccccccccccc
Q 048733 678 IHRG-FGSLRGLQSLR 692 (887)
Q Consensus 678 ~p~~-i~~L~~L~~L~ 692 (887)
+|.+ +..+++|++|.
T Consensus 76 i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 76 LPAGIFKELKNLETLW 91 (270)
T ss_dssp CCTTTTSSCTTCCEEE
T ss_pred eChhhhcCCCCCCEEE
Confidence 4443 34556666555
No 103
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.34 E-value=5.3e-13 Score=136.44 Aligned_cols=209 Identities=16% Similarity=0.152 Sum_probs=137.3
Q ss_pred EEecCCCCCCCccccccccccceeecCCCceeeecCccccccch-hhhcccccCeeeecccccccccccchhhhhhccC-
Q 048733 603 LDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPE-EIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHR- 680 (887)
Q Consensus 603 L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~- 680 (887)
+++....++.+|. +.. +|++|+++ +|.+..+|. .+.++++|++|++++|. ....+|.
T Consensus 16 ~~v~c~~l~~ip~-~~~--~l~~L~l~--------~n~l~~i~~~~~~~l~~L~~L~l~~n~----------~l~~i~~~ 74 (239)
T 2xwt_C 16 FRVTCKDIQRIPS-LPP--STQTLKLI--------ETHLRTIPSHAFSNLPNISRIYVSIDV----------TLQQLESH 74 (239)
T ss_dssp TEEEECSCSSCCC-CCT--TCCEEEEE--------SCCCSEECTTTTTTCTTCCEEEEECCS----------SCCEECTT
T ss_pred ceeEccCccccCC-CCC--cccEEEEe--------CCcceEECHHHccCCCCCcEEeCCCCC----------CcceeCHh
Confidence 3334444777776 332 56655554 568888877 57789999999998871 1333333
Q ss_pred CccccccccccccccccCceecchHHHHHhhccccccceeEEe-ccCChhHHHHHHhcccCCcEEEEeecCCccccccCc
Q 048733 681 GFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRR-QNGNGRDLCALIANLENVETLGVLMKSKEEILDLQS 759 (887)
Q Consensus 681 ~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~ 759 (887)
.++++++|++| ++++ +....- .+..+.++++|+.|++++|..... +.
T Consensus 75 ~f~~l~~L~~L----------------------------~l~~~n~l~~i-~~~~f~~l~~L~~L~l~~n~l~~l---p~ 122 (239)
T 2xwt_C 75 SFYNLSKVTHI----------------------------EIRNTRNLTYI-DPDALKELPLLKFLGIFNTGLKMF---PD 122 (239)
T ss_dssp TEESCTTCCEE----------------------------EEEEETTCCEE-CTTSEECCTTCCEEEEEEECCCSC---CC
T ss_pred HcCCCcCCcEE----------------------------ECCCCCCeeEc-CHHHhCCCCCCCEEeCCCCCCccc---cc
Confidence 24444455444 4443 222110 112345677888888887765442 22
Q ss_pred ccccccccc---eeEEeec-c-CCCCh-hhhcCCCcc-eeEEEecccCCcCcC--cCcccceeeeCcCCCceeEEEc-CC
Q 048733 760 LSSPPQHLQ---YLSLRGN-M-KKLPD-WILKLKNLI-GSRLILSGLTEDPIS--WFPKLRKLVLLNFEAVKSVIIE-KG 829 (887)
Q Consensus 760 l~~~~~~L~---~L~L~~~-~-~~lp~-~~~~l~~L~-~L~L~~~~l~~~~~~--~~~~L~~L~l~~~~~l~~~~~~-~~ 829 (887)
+...+ +|+ .|++++| . ..+|. .+..+++|+ .|+|++|.+...+.. ..++|+.|++.++..++.++.. +.
T Consensus 123 ~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~ 201 (239)
T 2xwt_C 123 LTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201 (239)
T ss_dssp CTTCC-BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTT
T ss_pred ccccc-ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhh
Confidence 33333 566 8999887 3 45553 577899999 999999988765443 2368999999998667777543 56
Q ss_pred Cc-cCccEEEEccCCCCCccccccccCCCCCEEEEEechh
Q 048733 830 AM-PDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMSK 868 (887)
Q Consensus 830 ~l-p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 868 (887)
.+ ++|+.|++++|+ ++.+|.. .+++|+.|.+.+++.
T Consensus 202 ~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 202 GVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp TCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC--
T ss_pred ccccCCcEEECCCCc-cccCChh--HhccCceeeccCccC
Confidence 78 999999999987 6778875 789999999988863
No 104
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=3.9e-11 Score=132.33 Aligned_cols=297 Identities=13% Similarity=0.131 Sum_probs=174.9
Q ss_pred cCccccchhcHHHHHHHHhcC--CCCcEEEEEEccCCCCHHHHHHHHhcccCccCC---CceeEEEEeCCCCCHHHHHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNG--RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTH---FSCRAWVTVGKEYNKNDLLRT 244 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~wv~v~~~~~~~~~~~~ 244 (887)
+..++||+.+++++.+++... ......+.|+|++|+||||||+.+++. .... -...+|+......+...++..
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 467999999999999988752 234568899999999999999999984 2222 224567776665666777777
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhC--CCceEEEEeccCCh------hHHHHHHHhc
Q 048733 245 IIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLK--DKSYMVVLDDVWKI------DFWRDVEHAL 316 (887)
Q Consensus 245 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~------~~~~~l~~~l 316 (887)
++.+++.... ....+..++...+.+.+. +++.+||||+++.. +.+..+...+
T Consensus 97 i~~~l~~~~~--------------------~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~ 156 (386)
T 2qby_A 97 LLESLDVKVP--------------------FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRIN 156 (386)
T ss_dssp HTTTTSCCCC--------------------SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHH
T ss_pred HHHHhCCCCC--------------------CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhch
Confidence 7665532110 112234566666666664 45899999999653 2334443333
Q ss_pred CC-CCCCcEEEEEccchhHHhhh----ccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhC-
Q 048733 317 LD-NKKCSRIIVTTRHMNVAKFC----KLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCG- 390 (887)
Q Consensus 317 ~~-~~~gs~iivTtR~~~v~~~~----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~- 390 (887)
.. ...+..+|+||+........ ........+.+++++.++..+++.+.+......... ..++.+.|++.++
T Consensus 157 ~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 233 (386)
T 2qby_A 157 SEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVL---PDNVIKLCAALAAR 233 (386)
T ss_dssp HSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCS---CHHHHHHHHHHHHH
T ss_pred hhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCC---CHHHHHHHHHHHHH
Confidence 22 23355677777765432211 011111589999999999999999864211100111 2455666777777
Q ss_pred --CCchHHHHHhhhh---c---C-CCCCHHHHHHHHHHhccccCCCCCccchHHHHhhcccCCChhhHHHHhhhcccCC-
Q 048733 391 --GLPLAIVAVGGLL---S---T-KNRIVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYYDLPHHLKSCLLYFGLFPE- 460 (887)
Q Consensus 391 --G~PLai~~~~~~l---~---~-~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~Lp~~~k~cf~~~s~fp~- 460 (887)
|.|..+..+.... . . ..-+.+.+..++.... ...+.-++..+|++.+..+..++.+.+
T Consensus 234 ~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~------------~~~~~~~~~~l~~~~~~il~ai~~~~~~ 301 (386)
T 2qby_A 234 EHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE------------RDRVRDIILTLPFHSKLVLMAVVSISSE 301 (386)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH------------HHHHHHHHHTSCHHHHHHHHHHHHHC--
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh------------hchHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 9998443332221 1 1 1224555555554432 134555677889888888877774322
Q ss_pred C-cccChhHHHHHHH--H--cCccccCCCCCHHHHHHHHHHHHhhcCCeeeee
Q 048733 461 S-CKINRGRLIRLWI--A--EGLVQYSKRFTSEQVAAEYLDELIDRSLVQVSN 508 (887)
Q Consensus 461 ~-~~i~~~~li~~w~--a--~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 508 (887)
+ ..+....+.+... + .|. . .........+++.|...+++....
T Consensus 302 g~~~~~~~~l~~~~~~~~~~~g~-~----~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 302 ENVVSTTGAVYETYLNICKKLGV-E----AVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp ---CEEHHHHHHHHHHHHHHHTC-C----CCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCceeHHHHHHHHHHHHHhcCC-C----CCCHHHHHHHHHHHHhCCCEEEEe
Confidence 1 1233333333221 1 121 1 112345678899999999998754
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.33 E-value=9.9e-13 Score=142.74 Aligned_cols=218 Identities=15% Similarity=0.086 Sum_probs=123.0
Q ss_pred eeEEEEecCCCCCCCcc-ccccccccceeecCCCceeeecCccccccchh-hhcccccCeeeecccccccccccchhhhh
Q 048733 599 LMKVLDLEDSPINYLPE-GVGNLFNLHLLNARNTKILDLAHTFVSELPEE-IRNLKKLRSLIVFHYKYITGSIIPTEAAA 676 (887)
Q Consensus 599 ~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 676 (887)
+++.|+|++|.|+.+|. .+.+|++|++|+|++|. -.+.+|.. +.++++|+++...+++ .+.
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-------i~~~i~~~~f~~L~~l~~~l~~~~N----------~l~ 93 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND-------VLEVIEADVFSNLPKLHEIRIEKAN----------NLL 93 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT-------TCCEECTTSBCSCTTCCEEEEEEET----------TCC
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC-------CCCccChhHhhcchhhhhhhcccCC----------ccc
Confidence 45555555555555553 34555555555555443 11233332 2345554443332221 223
Q ss_pred hcc-CCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcc-cCCcEEEEeecCCccc
Q 048733 677 KIH-RGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANL-ENVETLGVLMKSKEEI 754 (887)
Q Consensus 677 ~~p-~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~-~~L~~L~l~~~~~~~~ 754 (887)
.+| ..++.+++|+.|. ++.+.+.......+....++..|++.........-...+..+ ..++.|++++|.....
T Consensus 94 ~l~~~~f~~l~~L~~L~----l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLL----ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp EECTTSBCCCTTCCEEE----EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred ccCchhhhhcccccccc----ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 332 2345555555554 333333222111222333444455543111100001122333 3678888888765543
Q ss_pred cccCcccccccccceeEEee-c-cCCCCh-hhhcCCCcceeEEEecccCCcCcCcCcccceeeeCcCCCceeEEEcCCCc
Q 048733 755 LDLQSLSSPPQHLQYLSLRG-N-MKKLPD-WILKLKNLIGSRLILSGLTEDPISWFPKLRKLVLLNFEAVKSVIIEKGAM 831 (887)
Q Consensus 755 ~~l~~l~~~~~~L~~L~L~~-~-~~~lp~-~~~~l~~L~~L~L~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l 831 (887)
. ....... +|+.|.+.+ + .+.+|. .+..+++|+.|+|++|.++..|...|.+|+.|.+.++..++.+|. ...+
T Consensus 170 ~--~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l 245 (350)
T 4ay9_X 170 H--NSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT-LEKL 245 (350)
T ss_dssp C--TTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCC-TTTC
T ss_pred C--hhhcccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCCC-chhC
Confidence 2 1222233 789999875 3 467775 467899999999999999988888899999999999988888874 6778
Q ss_pred cCccEEEEcc
Q 048733 832 PDIRELWIGP 841 (887)
Q Consensus 832 p~L~~L~l~~ 841 (887)
++|+.+++.+
T Consensus 246 ~~L~~l~l~~ 255 (350)
T 4ay9_X 246 VALMEASLTY 255 (350)
T ss_dssp CSCCEEECSC
T ss_pred cChhhCcCCC
Confidence 9999998864
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.32 E-value=6.6e-13 Score=141.56 Aligned_cols=152 Identities=17% Similarity=0.108 Sum_probs=104.6
Q ss_pred HhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCcccccc--Cc-ccccccccceeEEeecc-CCCCh---
Q 048733 709 ELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDL--QS-LSSPPQHLQYLSLRGNM-KKLPD--- 781 (887)
Q Consensus 709 ~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l--~~-l~~~~~~L~~L~L~~~~-~~lp~--- 781 (887)
.+..+++|+.|+++++... ...+..+.++++|+.|++++|...+...+ .. +...+ +|+.|+|++|. ..+|.
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~ 217 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP-AIQNLALRNTGMETPTGVCA 217 (310)
T ss_dssp HTTBCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC-CCCSCBCCSSCCCCHHHHHH
T ss_pred HhhhccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC-CCCEEECCCCCCCchHHHHH
Confidence 3456778888888764332 12234566788888888888865432111 11 12334 89999998874 44443
Q ss_pred -hhhcCCCcceeEEEecccCCc-C--cCcC---cccceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCCcccccccc
Q 048733 782 -WILKLKNLIGSRLILSGLTED-P--ISWF---PKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIDH 854 (887)
Q Consensus 782 -~~~~l~~L~~L~L~~~~l~~~-~--~~~~---~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~ 854 (887)
.+..+++|++|+|++|.+... | +..+ ++|++|++.++. ++.+|... +++|+.|++++|. ++.+|. +..
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~--~~~L~~L~Ls~N~-l~~~~~-~~~ 292 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGL--PAKLRVLDLSSNR-LNRAPQ-PDE 292 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCC--CSCCSCEECCSCC-CCSCCC-TTS
T ss_pred HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhh--cCCCCEEECCCCc-CCCCch-hhh
Confidence 246789999999999988775 2 2333 689999998875 55665443 4899999999987 666665 678
Q ss_pred CCCCCEEEEEech
Q 048733 855 LRNLELLTFHDMS 867 (887)
Q Consensus 855 l~~L~~L~l~~c~ 867 (887)
+++|+.|++++|+
T Consensus 293 l~~L~~L~L~~N~ 305 (310)
T 4glp_A 293 LPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSCEECSSTT
T ss_pred CCCccEEECcCCC
Confidence 8999999999988
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.32 E-value=1.1e-12 Score=142.47 Aligned_cols=237 Identities=14% Similarity=0.071 Sum_probs=167.8
Q ss_pred EEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchh-hhcccccCeeeecccccccccccchhhhhhcc
Q 048733 601 KVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEE-IRNLKKLRSLIVFHYKYITGSIIPTEAAAKIH 679 (887)
Q Consensus 601 r~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p 679 (887)
++++.+++.++++|..+ ..++++|+|++ |.|+.+|.. +.++++|++|++++|. ....+|
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~--------N~i~~i~~~~f~~l~~L~~L~Ls~N~----------i~~~i~ 71 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVL--------TKLRVIQKGAFSGFGDLEKIEISQND----------VLEVIE 71 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEES--------CCCSEECTTSSTTCTTCCEEEEECCT----------TCCEEC
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccC--------CcCCCcCHHHHcCCCCCCEEECcCCC----------CCCccC
Confidence 56788899999999876 35677776665 469999975 6899999999999982 223455
Q ss_pred CC-ccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccC
Q 048733 680 RG-FGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQ 758 (887)
Q Consensus 680 ~~-i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~ 758 (887)
.+ +.+|++|+.+. .+..+.+....+..+..+++|+.|+++++...... ...+....++..|.+..+.........
T Consensus 72 ~~~f~~L~~l~~~l---~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~l~~l~l~~~~~i~~l~~~ 147 (350)
T 4ay9_X 72 ADVFSNLPKLHEIR---IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERN 147 (350)
T ss_dssp TTSBCSCTTCCEEE---EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC-CCTTCCBSSCEEEEEESCTTCCEECTT
T ss_pred hhHhhcchhhhhhh---cccCCcccccCchhhhhccccccccccccccccCC-chhhcccchhhhhhhcccccccccccc
Confidence 43 67777776543 01234444444566789999999999975332110 112234456777887765433333223
Q ss_pred cccccccccceeEEeec-cCCCChhhhcCCCcceeEEEe-cccCCcC---cCcCcccceeeeCcCCCceeEEEcCCCccC
Q 048733 759 SLSSPPQHLQYLSLRGN-MKKLPDWILKLKNLIGSRLIL-SGLTEDP---ISWFPKLRKLVLLNFEAVKSVIIEKGAMPD 833 (887)
Q Consensus 759 ~l~~~~~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~-~~l~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~ 833 (887)
.+...+..++.|+|++| +..+|.......+|+.|.+.+ |.+...+ +..+++|+.|+++++. ++.+|. +.+.+
T Consensus 148 ~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~--~~~~~ 224 (350)
T 4ay9_X 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS--YGLEN 224 (350)
T ss_dssp SSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS--SSCTT
T ss_pred chhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh--hhhcc
Confidence 33444447899999987 467887777788999999975 5566554 3578899999999874 676664 46889
Q ss_pred ccEEEEccCCCCCccccccccCCCCCEEEEEe
Q 048733 834 IRELWIGPCPLLMEIPIGIDHLRNLELLTFHD 865 (887)
Q Consensus 834 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 865 (887)
|+.|.+.+|..++.+|. +.++++|+.+++.+
T Consensus 225 L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred chHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 99999999999999995 78999999999865
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.30 E-value=2.8e-13 Score=147.96 Aligned_cols=243 Identities=13% Similarity=0.102 Sum_probs=164.0
Q ss_pred EEEecCCCCCCC-ccccccccccceeecCCCceeeecCccccccc-----hhhhccc-ccCeeeecccccccccccchhh
Q 048733 602 VLDLEDSPINYL-PEGVGNLFNLHLLNARNTKILDLAHTFVSELP-----EEIRNLK-KLRSLIVFHYKYITGSIIPTEA 674 (887)
Q Consensus 602 ~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp-----~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~ 674 (887)
.++|+.+.++.. |..+....+|++|+|++|. +...+ ..+.+++ +|++|++++|. +++.
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~--------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~------ 66 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN--------LYSISTVELIQAFANTPASVTSLNLSGNS-LGFK------ 66 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSC--------GGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGS------
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCC--------CChHHHHHHHHHHHhCCCceeEEECcCCC-CCHH------
Confidence 367888888854 5555556669999888764 66555 5677888 89999999982 2221
Q ss_pred hhhccCCcccc-----ccccccccccccCceecchHHHHH----hhcc-ccccceeEEeccC---ChhHHHHHHhcc-cC
Q 048733 675 AAKIHRGFGSL-----RGLQSLRGLLALPTIEADSQVLKE----LMML-RQLNMLSIRRQNG---NGRDLCALIANL-EN 740 (887)
Q Consensus 675 ~~~~p~~i~~L-----~~L~~L~~~~~l~~~~~~~~~~~~----l~~l-~~L~~L~l~~~~~---~~~~l~~~l~~~-~~ 740 (887)
.+..+..+ ++|++|+ ++.+.+....+.. +..+ ++|+.|+++++.. ....+...+..+ ++
T Consensus 67 ---~~~~l~~~l~~~~~~L~~L~----Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 139 (362)
T 3goz_A 67 ---NSDELVQILAAIPANVTSLN----LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139 (362)
T ss_dssp ---CHHHHHHHHHTSCTTCCEEE----CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTT
T ss_pred ---HHHHHHHHHhccCCCccEEE----CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCc
Confidence 12223333 8899998 7788776554444 4444 8999999997433 233445556664 69
Q ss_pred CcEEEEeecCCcccc--cc-CcccccccccceeEEeecc-C-CCCh----hhhcC-CCcceeEEEecccCCcCcC-----
Q 048733 741 VETLGVLMKSKEEIL--DL-QSLSSPPQHLQYLSLRGNM-K-KLPD----WILKL-KNLIGSRLILSGLTEDPIS----- 805 (887)
Q Consensus 741 L~~L~l~~~~~~~~~--~l-~~l~~~~~~L~~L~L~~~~-~-~lp~----~~~~l-~~L~~L~L~~~~l~~~~~~----- 805 (887)
|+.|++++|...... .+ ..+...+++|+.|+|++|. . ..+. .+..+ ++|+.|+|++|.+......
T Consensus 140 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~ 219 (362)
T 3goz_A 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred eeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence 999999988655321 11 1222233489999999874 3 3333 34455 5999999999998773322
Q ss_pred --c-CcccceeeeCcCCCceeEE-----EcCCCccCccEEEEccCCC-------CCccccccccCCCCCEEEEEech
Q 048733 806 --W-FPKLRKLVLLNFEAVKSVI-----IEKGAMPDIRELWIGPCPL-------LMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 806 --~-~~~L~~L~l~~~~~l~~~~-----~~~~~lp~L~~L~l~~c~~-------l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
. .++|++|++.++. +...+ .....+++|+.|++++|.. +..++..+.++++|++|++++|+
T Consensus 220 l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 2 3589999999875 43332 2346789999999999971 22345567788899999999886
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=2.8e-12 Score=146.60 Aligned_cols=187 Identities=14% Similarity=0.117 Sum_probs=113.4
Q ss_pred eeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhc
Q 048733 599 LMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKI 678 (887)
Q Consensus 599 ~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 678 (887)
+|++|+|++|.+..+|..+. ++|++|+|++| .+..+| ..+++|++|++++| .+..+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N--------~l~~ip---~~l~~L~~L~Ls~N-----------~l~~i 115 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQN--------ALISLP---ELPASLEYLDACDN-----------RLSTL 115 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSS--------CCSCCC---CCCTTCCEEECCSS-----------CCSCC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCC--------CCcccc---cccCCCCEEEccCC-----------CCCCc
Confidence 67788888888877777663 67777776654 466777 45678888888876 22233
Q ss_pred cCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccC
Q 048733 679 HRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQ 758 (887)
Q Consensus 679 p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~ 758 (887)
|. +++ +|+.| ++++|.... ++. .+++|+.|++++|..... +
T Consensus 116 p~-l~~--~L~~L----------------------------~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~l---p 156 (571)
T 3cvr_A 116 PE-LPA--SLKHL----------------------------DVDNNQLTM--LPE---LPALLEYINADNNQLTML---P 156 (571)
T ss_dssp CC-CCT--TCCEE----------------------------ECCSSCCSC--CCC---CCTTCCEEECCSSCCSCC---C
T ss_pred ch-hhc--CCCEE----------------------------ECCCCcCCC--CCC---cCccccEEeCCCCccCcC---C
Confidence 33 222 33333 333321111 111 355666777666654331 1
Q ss_pred cccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcCcCcCccc-------ceeeeCcCCCceeEEEcCCC
Q 048733 759 SLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDPISWFPKL-------RKLVLLNFEAVKSVIIEKGA 830 (887)
Q Consensus 759 ~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~~~L-------~~L~l~~~~~l~~~~~~~~~ 830 (887)
. .+++|+.|+|++|. ..+|. +. ++|+.|+|++|.++..|. ...+| +.|++.+|. +..+|..+..
T Consensus 157 ~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~ 228 (571)
T 3cvr_A 157 E---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCRENR-ITHIPENILS 228 (571)
T ss_dssp C---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC--------CCEEEECCSSC-CCCCCGGGGG
T ss_pred C---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHHhhhcccccceEEecCCCc-ceecCHHHhc
Confidence 1 22377777777763 45665 43 777778887777765444 23356 777777764 5567766667
Q ss_pred ccCccEEEEccCCCCCccccccccCC
Q 048733 831 MPDIRELWIGPCPLLMEIPIGIDHLR 856 (887)
Q Consensus 831 lp~L~~L~l~~c~~l~~lp~~~~~l~ 856 (887)
+++|+.|+|++|+....+|..+..++
T Consensus 229 l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 229 LDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 88888888888886666776665543
No 110
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.20 E-value=2.1e-10 Score=117.59 Aligned_cols=201 Identities=15% Similarity=0.106 Sum_probs=119.3
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
..++||+..++.+..++..+.. .+.+.|+|++|+||||||+.+++.......+.. ........ .. .+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~-~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~----~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRI-HHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CR----EIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCC-CSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HH----HHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCC-CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HH----HHh
Confidence 4699999999999999986542 347889999999999999999875221111100 00000000 00 111
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-----CCCceEEEEeccCC--hhHHHHHHHhcCCCCCCc
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-----KDKSYMVVLDDVWK--IDFWRDVEHALLDNKKCS 323 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs 323 (887)
.... .+. .... .......+.+. .+.+.+ .+++.+||+||++. .+.++.+...+.....+.
T Consensus 91 ~~~~--~~~---------~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~ 157 (250)
T 1njg_A 91 QGRF--VDL---------IEID-AASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 157 (250)
T ss_dssp TTCC--SSE---------EEEE-TTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTE
T ss_pred ccCC--cce---------EEec-CcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCce
Confidence 0000 000 0000 00001112222 222222 34679999999965 456777777776666678
Q ss_pred EEEEEccchhHH-hhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHhhh
Q 048733 324 RIIVTTRHMNVA-KFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGL 402 (887)
Q Consensus 324 ~iivTtR~~~v~-~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 402 (887)
.+|+||+..... .... .....+++++++.++..+++.+.+..... .-..+....|++.|+|+|..+..+...
T Consensus 158 ~~i~~t~~~~~~~~~l~--~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-----~~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 158 KFLLATTDPQKLPVTIL--SRCLQFHLKALDVEQIRHQLEHILNEEHI-----AHEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp EEEEEESCGGGSCHHHH--TTSEEEECCCCCHHHHHHHHHHHHHHTTC-----CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEEEEeCChHhCCHHHH--HHhhhccCCCCCHHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 888888765321 1111 11368999999999999999987643221 112466788999999999988876544
Q ss_pred h
Q 048733 403 L 403 (887)
Q Consensus 403 l 403 (887)
+
T Consensus 231 ~ 231 (250)
T 1njg_A 231 A 231 (250)
T ss_dssp H
T ss_pred H
Confidence 3
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.20 E-value=1.9e-11 Score=120.67 Aligned_cols=147 Identities=18% Similarity=0.217 Sum_probs=115.0
Q ss_pred hccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-C-CCChhhhcCCC
Q 048733 711 MMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-K-KLPDWILKLKN 788 (887)
Q Consensus 711 ~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~-~lp~~~~~l~~ 788 (887)
..+++|+.|+++++... .++ .+..+++|+.|++++|.... +..+...+ +|+.|++++|. . ..|..+..+++
T Consensus 41 ~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~---~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHATN---YNPISGLS-NLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp HHHHTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCSC---CGGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred hhcCCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCCc---chhhhcCC-CCCEEEeECCccCcccChhhcCCCC
Confidence 55678888888874333 233 57888999999999884432 23444445 99999999874 3 35778889999
Q ss_pred cceeEEEecccCCc---CcCcCcccceeeeCcCCCceeEEEcCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEe
Q 048733 789 LIGSRLILSGLTED---PISWFPKLRKLVLLNFEAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHD 865 (887)
Q Consensus 789 L~~L~L~~~~l~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 865 (887)
|+.|+|++|.+... .+..+++|++|++.+|..+..++ .+..+|+|+.|++++|. +..++ .+..+++|++|++++
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECB
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeC
Confidence 99999999998763 34578999999999987566665 57789999999999997 66676 788999999999999
Q ss_pred ch
Q 048733 866 MS 867 (887)
Q Consensus 866 c~ 867 (887)
|+
T Consensus 191 N~ 192 (197)
T 4ezg_A 191 QT 192 (197)
T ss_dssp C-
T ss_pred cc
Confidence 98
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.18 E-value=4.7e-11 Score=117.74 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=97.7
Q ss_pred CCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchhh
Q 048733 595 ANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEA 674 (887)
Q Consensus 595 ~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 674 (887)
..+++|+.|++++|.+..+| .+..+++|++|++++|. +..+| .+.++++|++|++++|. .
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~--------~~~~~-~l~~l~~L~~L~l~~n~----------l 100 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH--------ATNYN-PISGLSNLERLRIMGKD----------V 100 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC--------CSCCG-GGTTCTTCCEEEEECTT----------C
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC--------CCcch-hhhcCCCCCEEEeECCc----------c
Confidence 56788999999999999888 78899999999888763 44444 67889999999999872 1
Q ss_pred hhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccc
Q 048733 675 AAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEI 754 (887)
Q Consensus 675 ~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 754 (887)
....|..++.+++|++|. ++.+.+....+. .+.++++|+.|++++|.....
T Consensus 101 ~~~~~~~l~~l~~L~~L~----Ls~n~i~~~~~~-------------------------~l~~l~~L~~L~L~~n~~i~~ 151 (197)
T 4ezg_A 101 TSDKIPNLSGLTSLTLLD----ISHSAHDDSILT-------------------------KINTLPKVNSIDLSYNGAITD 151 (197)
T ss_dssp BGGGSCCCTTCTTCCEEE----CCSSBCBGGGHH-------------------------HHTTCSSCCEEECCSCTBCCC
T ss_pred CcccChhhcCCCCCCEEE----ecCCccCcHhHH-------------------------HHhhCCCCCEEEccCCCCccc
Confidence 112455566666666666 444444333333 444555555555555531111
Q ss_pred cccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccC
Q 048733 755 LDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLT 800 (887)
Q Consensus 755 ~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~ 800 (887)
++.+...+ +|+.|++++|. ..++ .+..+++|+.|++++|.+.
T Consensus 152 --~~~l~~l~-~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 152 --IMPLKTLP-ELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp --CGGGGGCS-SCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred --cHhhcCCC-CCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 12233333 67777777653 4455 5677888888888888764
No 113
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.16 E-value=2.9e-11 Score=124.43 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=31.6
Q ss_pred hcccCCcEEEEeecCCccccccCcccccccccceeEEeecc-CCCC-hhhhcCCCcceeEEEecccCC
Q 048733 736 ANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLP-DWILKLKNLIGSRLILSGLTE 801 (887)
Q Consensus 736 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp-~~~~~l~~L~~L~L~~~~l~~ 801 (887)
.++++|+.|++++|....... ..+...+ +|+.|+|++|. ..+| ..+..+++|+.|+|++|.+..
T Consensus 128 ~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 128 DRLTKLKELRLNTNQLQSIPA-GAFDKLT-NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCT-TTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ccCCcccEEECcCCcCCccCH-HHcCcCc-CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 445566666665554332211 1222223 56666666552 3333 245556666666666666543
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.15 E-value=5.9e-12 Score=144.75 Aligned_cols=204 Identities=17% Similarity=0.123 Sum_probs=127.9
Q ss_pred ccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhccCCcccccccccccccccc
Q 048733 618 GNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLAL 697 (887)
Q Consensus 618 ~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l 697 (887)
..+++|+.|+|+ +|.+..+|..|.+|++|+.|++++|. ....+|. .+.
T Consensus 346 ~~~~~L~~L~Ls--------~n~L~~Lp~~i~~l~~L~~L~l~~n~----------~l~~l~~---------ll~----- 393 (567)
T 1dce_A 346 ATDEQLFRCELS--------VEKSTVLQSELESCKELQELEPENKW----------CLLTIIL---------LMR----- 393 (567)
T ss_dssp STTTTSSSCCCC--------HHHHHHHHHHHHHHHHHHHHCTTCHH----------HHHHHHH---------HHH-----
T ss_pred ccCccceeccCC--------hhhHHhhHHHHHHHHHHHHhccccch----------hhhhHHH---------HHH-----
Confidence 456667666555 56899999999999999999997762 1111110 000
Q ss_pred CceecchHHHHHhhcccccccee-EEeccCChhHHHH------HHhc--ccCCcEEEEeecCCccccccCcccccccccc
Q 048733 698 PTIEADSQVLKELMMLRQLNMLS-IRRQNGNGRDLCA------LIAN--LENVETLGVLMKSKEEILDLQSLSSPPQHLQ 768 (887)
Q Consensus 698 ~~~~~~~~~~~~l~~l~~L~~L~-l~~~~~~~~~l~~------~l~~--~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~ 768 (887)
.....+..+..++.+++|+.|+ ++.+. ...+.. .+.. ...|+.|++++|...+. +.+...+ +|+
T Consensus 394 -~~~~~~~~~~~l~~l~~L~~L~~l~~n~--~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l---p~~~~l~-~L~ 466 (567)
T 1dce_A 394 -ALDPLLYEKETLQYFSTLKAVDPMRAAY--LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL---CHLEQLL-LVT 466 (567)
T ss_dssp -HHCTGGGHHHHHHHHHHHHHHCGGGHHH--HHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC---CCGGGGT-TCC
T ss_pred -hcccccCCHHHHHHHHhcccCcchhhcc--cchhhhhhhhcccccccCccCceEEEecCCCCCCC---cCccccc-cCc
Confidence 1112233444555556665555 22210 001110 1111 13688888888765542 3444444 889
Q ss_pred eeEEeec-cCCCChhhhcCCCcceeEEEecccCCcC-cCcCcccceeeeCcCCCceeE--EEcCCCccCccEEEEccCCC
Q 048733 769 YLSLRGN-MKKLPDWILKLKNLIGSRLILSGLTEDP-ISWFPKLRKLVLLNFEAVKSV--IIEKGAMPDIRELWIGPCPL 844 (887)
Q Consensus 769 ~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~-~~~~~~L~~L~l~~~~~l~~~--~~~~~~lp~L~~L~l~~c~~ 844 (887)
.|+|++| +..+|..++.+++|+.|+|++|.++..| +..+++|+.|++.++. +..+ |..++.+++|+.|++++|+
T Consensus 467 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~- 544 (567)
T 1dce_A 467 HLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS- 544 (567)
T ss_dssp EEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG-
T ss_pred EeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc-
Confidence 9999886 4678888888899999999988887654 3467788888887764 4444 5667778888888888887
Q ss_pred CCcccccc----ccCCCCCEEE
Q 048733 845 LMEIPIGI----DHLRNLELLT 862 (887)
Q Consensus 845 l~~lp~~~----~~l~~L~~L~ 862 (887)
+..+|..+ ..+|+|+.|+
T Consensus 545 l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 545 LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCccHHHHHHHHCcccCccC
Confidence 55554432 3478888775
No 115
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.15 E-value=6.6e-11 Score=124.52 Aligned_cols=168 Identities=24% Similarity=0.284 Sum_probs=113.6
Q ss_pred CCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhh
Q 048733 570 KDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIR 649 (887)
Q Consensus 570 ~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~ 649 (887)
.+++++.|.+.++... .+ ..+..+++|++|+|++|.+..++. ++++++|++|++++|. +..+|. +.
T Consensus 44 ~l~~L~~L~l~~~~i~--~~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~--------l~~~~~-l~ 109 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK--SV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK--------VKDLSS-LK 109 (291)
T ss_dssp HHHTCCEEECTTSCCC--CC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--------CCCGGG-GT
T ss_pred hcCcccEEEccCCCcc--cC--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc--------CCCChh-hc
Confidence 4566777777666542 11 236677888888888888887766 7888888888777653 555553 77
Q ss_pred cccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChh
Q 048733 650 NLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGR 729 (887)
Q Consensus 650 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 729 (887)
++++|++|++++| ....+ ..++.+++|+.|+ ++.+.+... ..+..+++|+.|+++++.....
T Consensus 110 ~l~~L~~L~L~~n-----------~i~~~-~~l~~l~~L~~L~----l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 110 DLKKLKSLSLEHN-----------GISDI-NGLVHLPQLESLY----LGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp TCTTCCEEECTTS-----------CCCCC-GGGGGCTTCCEEE----CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred cCCCCCEEECCCC-----------cCCCC-hhhcCCCCCCEEE----ccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 7888888888876 22233 2467777788777 556555443 4577888888888886433322
Q ss_pred HHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeecc
Q 048733 730 DLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM 776 (887)
Q Consensus 730 ~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 776 (887)
+. +..+++|+.|++++|..... ..+...+ +|+.|++++|.
T Consensus 172 --~~-l~~l~~L~~L~L~~N~i~~l---~~l~~l~-~L~~L~l~~n~ 211 (291)
T 1h6t_A 172 --VP-LAGLTKLQNLYLSKNHISDL---RALAGLK-NLDVLELFSQE 211 (291)
T ss_dssp --GG-GTTCTTCCEEECCSSCCCBC---GGGTTCT-TCSEEEEEEEE
T ss_pred --hh-hcCCCccCEEECCCCcCCCC---hhhccCC-CCCEEECcCCc
Confidence 22 77888999999988865543 3344444 89999998863
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.13 E-value=1.8e-11 Score=139.88 Aligned_cols=89 Identities=20% Similarity=0.208 Sum_probs=56.2
Q ss_pred ccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCccccccccc-------ceeEEeecc-CCCChhh
Q 048733 712 MLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHL-------QYLSLRGNM-KKLPDWI 783 (887)
Q Consensus 712 ~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L-------~~L~L~~~~-~~lp~~~ 783 (887)
.+++|+.|++++|.... ++. +. ++|+.|++++|..... +.+. .+| +.|+|++|. ..+|.++
T Consensus 158 ~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~L~~l---p~~~---~~L~~~~~~L~~L~Ls~N~l~~lp~~l 226 (571)
T 3cvr_A 158 LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNLLESL---PAVP---VRNHHSEETEIFFRCRENRITHIPENI 226 (571)
T ss_dssp CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCCSSC---CCCC-----------CCEEEECCSSCCCCCCGGG
T ss_pred cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCCCCch---hhHH---HhhhcccccceEEecCCCcceecCHHH
Confidence 34566666666543222 223 32 7888888887755432 2211 155 899998874 6788888
Q ss_pred hcCCCcceeEEEecccCCcCcCcCcccc
Q 048733 784 LKLKNLIGSRLILSGLTEDPISWFPKLR 811 (887)
Q Consensus 784 ~~l~~L~~L~L~~~~l~~~~~~~~~~L~ 811 (887)
..+++|+.|+|++|.+....+..|.+|.
T Consensus 227 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp GGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 8899999999999988776555444443
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.12 E-value=8.9e-12 Score=128.99 Aligned_cols=159 Identities=21% Similarity=0.252 Sum_probs=101.6
Q ss_pred ccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccch
Q 048733 593 CIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPT 672 (887)
Q Consensus 593 ~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 672 (887)
.+..+++|++|++++|.+..+| .++.+++|++|++++| .+..+|. +.++++|++|++++|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N--------~i~~~~~-l~~l~~L~~L~L~~N---------- 95 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN--------QISDLSP-LKDLTKLEELSVNRN---------- 95 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS--------CCCCCGG-GTTCSSCCEEECCSS----------
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC--------ccCCChh-hccCCCCCEEECCCC----------
Confidence 3566777888888888877776 6777778877777664 4666666 777888888888876
Q ss_pred hhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCc
Q 048733 673 EAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKE 752 (887)
Q Consensus 673 ~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 752 (887)
....+|.. . . ++|+.|+++++..... ..+.++++|+.|++++|...
T Consensus 96 -~l~~l~~~-~----------------------------~-~~L~~L~L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 96 -RLKNLNGI-P----------------------------S-ACLSRLFLDNNELRDT---DSLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp -CCSCCTTC-C----------------------------C-SSCCEEECCSSCCSBS---GGGTTCTTCCEEECTTSCCC
T ss_pred -ccCCcCcc-c----------------------------c-CcccEEEccCCccCCC---hhhcCcccccEEECCCCcCC
Confidence 22222211 1 1 4455555554322221 23566777777777777554
Q ss_pred cccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcCcCcCccc
Q 048733 753 EILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDPISWFPKL 810 (887)
Q Consensus 753 ~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~~~L 810 (887)
+. ..+...+ +|+.|++++|. ..+ ..+..+++|+.|+|++|.+...+...++.+
T Consensus 142 ~~---~~l~~l~-~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~~~~~~l 195 (263)
T 1xeu_A 142 SI---VMLGFLS-KLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVKYQPEL 195 (263)
T ss_dssp BC---GGGGGCT-TCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCEECCSEE
T ss_pred CC---hHHccCC-CCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCccccccce
Confidence 43 2333334 78888888764 344 467788889999999988877665544433
No 118
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.11 E-value=1.4e-09 Score=109.44 Aligned_cols=183 Identities=16% Similarity=0.131 Sum_probs=114.8
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCc-eeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFS-CRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
..++|++..++++.+++.... ...+.|+|++|+|||+||+.+++... ...+. ..+.+..+.......+. ..+..+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 92 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVR-HKIKEF 92 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHH-HHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHH-HHHHHH
Confidence 468999999999999998764 22388999999999999999987421 11121 23334443333322221 111111
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEE
Q 048733 250 HRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIV 327 (887)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 327 (887)
..... .-.+++.+||+||++.. +..+.+...+.....+.++|+
T Consensus 93 ~~~~~-----------------------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~ 137 (226)
T 2chg_A 93 ARTAP-----------------------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFIL 137 (226)
T ss_dssp HTSCC-----------------------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEE
T ss_pred hcccC-----------------------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEE
Confidence 11000 01256889999999764 445566666655556778888
Q ss_pred EccchhHH-hhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 048733 328 TTRHMNVA-KFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAV 399 (887)
Q Consensus 328 TtR~~~v~-~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 399 (887)
||+..... .... .....+.+.+++.++..+++.+.+..... . -..+....|++.++|.|..+..+
T Consensus 138 ~~~~~~~~~~~l~--~r~~~i~~~~~~~~~~~~~l~~~~~~~~~--~---~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 138 SCNYVSRIIEPIQ--SRCAVFRFKPVPKEAMKKRLLEICEKEGV--K---ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp EESCGGGSCHHHH--TTSEEEECCCCCHHHHHHHHHHHHHHHTC--C---BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred EeCChhhcCHHHH--HhCceeecCCCCHHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 88765321 1111 12258899999999999999987642211 1 12456778899999999865543
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.10 E-value=3.8e-11 Score=138.83 Aligned_cols=187 Identities=19% Similarity=0.198 Sum_probs=119.9
Q ss_pred CceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchhhhh
Q 048733 597 FKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAA 676 (887)
Q Consensus 597 ~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 676 (887)
+..+..+.+..+.+..++ .+..|.+|++|++++ |.+..+| .+..+++|++|+|++| .+.
T Consensus 20 l~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~--------n~i~~l~-~l~~l~~L~~L~Ls~N-----------~l~ 78 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV-TQNELNSIDQIIANN--------SDIKSVQ-GIQYLPNVTKLFLNGN-----------KLT 78 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTT--------CCCCCCT-TGGGCTTCCEEECTTS-----------CCC
T ss_pred HHHHHHHhccCCCccccc-chhcCCCCCEEECcC--------CCCCCCh-HHccCCCCCEEEeeCC-----------CCC
Confidence 444566677777776554 357888888887775 5788887 5889999999999987 334
Q ss_pred hccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccc
Q 048733 677 KIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILD 756 (887)
Q Consensus 677 ~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~ 756 (887)
.+|. +..|++|+.|. ++.+.+... ..+..+++|+.|+++.+.... + ..+..+++|+.|+|++|.....
T Consensus 79 ~~~~-l~~l~~L~~L~----Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~l-- 146 (605)
T 1m9s_A 79 DIKP-LTNLKNLGWLF----LDENKIKDL--SSLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI-- 146 (605)
T ss_dssp CCGG-GGGCTTCCEEE----CCSSCCCCC--TTSTTCTTCCEEECTTSCCCC--C-GGGGGCTTCSEEECCSSCCCCC--
T ss_pred CChh-hccCCCCCEEE----CcCCCCCCC--hhhccCCCCCEEEecCCCCCC--C-ccccCCCccCEEECCCCccCCc--
Confidence 4444 77778888877 555555332 256677777777776543222 1 3466677777777776654432
Q ss_pred cCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCc-CcCcCcccceeeeCcCC
Q 048733 757 LQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTED-PISWFPKLRKLVLLNFE 819 (887)
Q Consensus 757 l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~-~~~~~~~L~~L~l~~~~ 819 (887)
..+...+ +|+.|+|++|. ..++. +..+++|+.|+|++|.+... .+..+++|+.|.|.+|+
T Consensus 147 -~~l~~l~-~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 147 -TVLSRLT-KLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -GGGGSCT-TCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred -hhhcccC-CCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence 2333333 77777777653 34433 66677777777777766553 23456666666666653
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.08 E-value=6.7e-13 Score=152.65 Aligned_cols=205 Identities=15% Similarity=0.116 Sum_probs=121.4
Q ss_pred CCCceeEEEEecCCCCCCCccccccccccceeecCCCcee-----eecC-ccccccchhhhcccccCeee-ecccccccc
Q 048733 595 ANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKIL-----DLAH-TFVSELPEEIRNLKKLRSLI-VFHYKYITG 667 (887)
Q Consensus 595 ~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~L-----dl~~-~~l~~lp~~i~~l~~L~~L~-l~~~~~~~~ 667 (887)
..++.|+.|+|++|.++.+|..|++|++|+.|++++|..+ -+.. +....+|..+.++++|++|+ ++.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n----- 420 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA----- 420 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-----
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-----
Confidence 5688999999999999999999999999999999765310 0011 12345566777777787777 4433
Q ss_pred cccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEe
Q 048733 668 SIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVL 747 (887)
Q Consensus 668 ~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~ 747 (887)
. +++|..+. .....+..+.. ..|+.|+++++.... ++. +.++++|+.|+++
T Consensus 421 ------~----------~~~L~~l~---------l~~n~i~~l~~-~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls 471 (567)
T 1dce_A 421 ------Y----------LDDLRSKF---------LLENSVLKMEY-ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLS 471 (567)
T ss_dssp ------H----------HHHHHHHH---------HHHHHHHHHHH-TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECC
T ss_pred ------c----------cchhhhhh---------hhcccccccCc-cCceEEEecCCCCCC--CcC-ccccccCcEeecC
Confidence 1 11122111 11111111111 236666666543222 333 6677777777777
Q ss_pred ecCCccccccCcccccccccceeEEeecc-CCCChhhhcCCCcceeEEEecccCCcC----cCcCcccceeeeCcCCCce
Q 048733 748 MKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKLPDWILKLKNLIGSRLILSGLTEDP----ISWFPKLRKLVLLNFEAVK 822 (887)
Q Consensus 748 ~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~~~----~~~~~~L~~L~l~~~~~l~ 822 (887)
+|..... + ..+...+ +|+.|+|++|. ..+| .++.+++|+.|+|++|.+...+ +..+++|+.|++.++. +.
T Consensus 472 ~N~l~~l-p-~~~~~l~-~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~ 546 (567)
T 1dce_A 472 HNRLRAL-P-PALAALR-CLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LC 546 (567)
T ss_dssp SSCCCCC-C-GGGGGCT-TCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GG
T ss_pred ccccccc-c-hhhhcCC-CCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CC
Confidence 7655422 1 1333333 77777777763 4566 6777777777777777776552 2356777777777764 33
Q ss_pred eEEEcCC----CccCccEEE
Q 048733 823 SVIIEKG----AMPDIRELW 838 (887)
Q Consensus 823 ~~~~~~~----~lp~L~~L~ 838 (887)
.++.... .+|+|+.|+
T Consensus 547 ~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 547 QEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GSSSCTTHHHHHCTTCSEEE
T ss_pred CCccHHHHHHHHCcccCccC
Confidence 3332222 367777775
No 121
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.08 E-value=1.7e-10 Score=118.63 Aligned_cols=155 Identities=18% Similarity=0.209 Sum_probs=110.8
Q ss_pred CceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCc-cccccccccceeecCCCceeeecCccccccch-hhh
Q 048733 572 SKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLP-EGVGNLFNLHLLNARNTKILDLAHTFVSELPE-EIR 649 (887)
Q Consensus 572 ~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~-~i~ 649 (887)
++++.|.+.++.. ..+.+..|.++++|++|+|++|.+..++ ..+..+++|++|+|++| .+..+|. .+.
T Consensus 35 ~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~ 104 (251)
T 3m19_A 35 ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN--------QLASLPLGVFD 104 (251)
T ss_dssp TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS--------CCCCCCTTTTT
T ss_pred CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC--------cccccChhHhc
Confidence 5788888887765 3344566788888999999998888665 44788888888888775 3666664 456
Q ss_pred cccccCeeeecccccccccccchhhhhhccCC-ccccccccccccccccCceecchHHHHHhhccccccceeEEeccCCh
Q 048733 650 NLKKLRSLIVFHYKYITGSIIPTEAAAKIHRG-FGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNG 728 (887)
Q Consensus 650 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~-i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 728 (887)
++++|++|++++| ....+|.. ++.+++|++|. ++.+.+.......+..+++|+.|+++++....
T Consensus 105 ~l~~L~~L~L~~N-----------~l~~~~~~~~~~l~~L~~L~----Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 105 HLTQLDKLYLGGN-----------QLKSLPSGVFDRLTKLKELR----LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TCTTCCEEECCSS-----------CCCCCCTTTTTTCTTCCEEE----CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccCCCCEEEcCCC-----------cCCCcChhHhccCCcccEEE----CcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 8888888888887 34455554 57788888887 66776665555567788888888888643321
Q ss_pred hHHHHHHhcccCCcEEEEeecCCc
Q 048733 729 RDLCALIANLENVETLGVLMKSKE 752 (887)
Q Consensus 729 ~~l~~~l~~~~~L~~L~l~~~~~~ 752 (887)
..+..+.++++|+.|++.+|...
T Consensus 170 -~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 170 -VPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp -CCTTTTTTCTTCCEEECCSCCBC
T ss_pred -cCHHHHhCCCCCCEEEeeCCcee
Confidence 11235667888888888887653
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.03 E-value=7.2e-11 Score=140.23 Aligned_cols=218 Identities=17% Similarity=0.138 Sum_probs=102.8
Q ss_pred CCceEEEEecCCC-ccccccCCCCceeEEEeecCCCC--CccccccccCCCceeEEEEecCCCCCCCcccccccccccee
Q 048733 550 SKTRRITIQRSID-DGALESIKDSKVRSVILFNVDKL--PDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLL 626 (887)
Q Consensus 550 ~~~r~lsi~~~~~-~~~~~~~~~~~lrsL~~~~~~~~--~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L 626 (887)
..++++++..+.. ..........+|+.+.+...... ....++..|..++.|++|+|++|.+..+|..++.+++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 3467777754433 22222233444444444332211 11245677889999999999999999999999999999999
Q ss_pred ecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHH
Q 048733 627 NARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQV 706 (887)
Q Consensus 627 ~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~ 706 (887)
+|++| .+..+|..+.+|++|++|+|++| .+..+|..|++|++|++|. ++.+.+. ..
T Consensus 253 ~Ls~N--------~l~~lp~~~~~l~~L~~L~Ls~N-----------~l~~lp~~~~~l~~L~~L~----L~~N~l~-~l 308 (727)
T 4b8c_D 253 YLNGN--------SLTELPAEIKNLSNLRVLDLSHN-----------RLTSLPAELGSCFQLKYFY----FFDNMVT-TL 308 (727)
T ss_dssp BCTTS--------CCSCCCGGGGGGTTCCEEECTTS-----------CCSSCCSSGGGGTTCSEEE----CCSSCCC-CC
T ss_pred EeeCC--------cCcccChhhhCCCCCCEEeCcCC-----------cCCccChhhcCCCCCCEEE----CCCCCCC-cc
Confidence 88876 47788998999999999999998 4557888899999999998 7677664 33
Q ss_pred HHHhhccccccceeEEeccCChhHHHHHHhcccC-CcEEEEeecCCccccccCcccccccccceeEEeecc------CCC
Q 048733 707 LKELMMLRQLNMLSIRRQNGNGRDLCALIANLEN-VETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM------KKL 779 (887)
Q Consensus 707 ~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~-L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~------~~l 779 (887)
+..++.|++|+.|++++|.... .++..+..+.. +..|++.+|.... ..|..|+.|+++.+. +.+
T Consensus 309 p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~l~l~~N~l~~--------~~p~~l~~l~l~~n~~~~~~~~~l 379 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPLEK-QFLKILTEKSVTGLIFYLRDNRPEI--------PLPHERRFIEINTDGEPQREYDSL 379 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCCCS-HHHHHHHHHHHHHHHHHHHHCCCCC--------CCCCC-------------------
T ss_pred ChhhhcCCCccEEeCCCCccCC-CChHHHhhcchhhhHHhhccCcccC--------cCccccceeEeecccccccccCCc
Confidence 4558889999999998754432 34444433321 1124444443221 122366777766541 233
Q ss_pred Ch----hhhcCCCcceeEEEecccC
Q 048733 780 PD----WILKLKNLIGSRLILSGLT 800 (887)
Q Consensus 780 p~----~~~~l~~L~~L~L~~~~l~ 800 (887)
|. .+..+.++....+++|.+.
T Consensus 380 ~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 380 QQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ----------------------CCC
T ss_pred cccccchhhcccccceeeeeccccc
Confidence 32 2334555566666666553
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.98 E-value=4.4e-10 Score=116.16 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=102.6
Q ss_pred cCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchh
Q 048733 568 SIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEE 647 (887)
Q Consensus 568 ~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~ 647 (887)
...+++|+.|.+.++... . ++ .+..+++|+.|+|++|.+..+|. +.++++|++|++++|. +..+|..
T Consensus 37 ~~~l~~L~~L~l~~n~i~--~-l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~--------l~~l~~~ 103 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ--S-LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR--------LKNLNGI 103 (263)
T ss_dssp HHHHTTCSEEECTTSCCC--C-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC--------CSCCTTC
T ss_pred hhhcCcCcEEECcCCCcc--c-ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc--------cCCcCcc
Confidence 346789999999988652 2 22 57889999999999999999987 9999999999988764 6777653
Q ss_pred hhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCC
Q 048733 648 IRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGN 727 (887)
Q Consensus 648 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 727 (887)
.. ++|++|++++| ....++ .++.+++|+.|+ ++.+.+... ..+..+++|+.|+++++...
T Consensus 104 ~~--~~L~~L~L~~N-----------~l~~~~-~l~~l~~L~~L~----Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 104 PS--ACLSRLFLDNN-----------ELRDTD-SLIHLKNLEILS----IRNNKLKSI--VMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CC--SSCCEEECCSS-----------CCSBSG-GGTTCTTCCEEE----CTTSCCCBC--GGGGGCTTCCEEECTTSCCC
T ss_pred cc--CcccEEEccCC-----------ccCCCh-hhcCcccccEEE----CCCCcCCCC--hHHccCCCCCEEECCCCcCc
Confidence 33 99999999998 233333 467777777777 555555432 24566666666666653322
Q ss_pred hhHHHHHHhcccCCcEEEEeecC
Q 048733 728 GRDLCALIANLENVETLGVLMKS 750 (887)
Q Consensus 728 ~~~l~~~l~~~~~L~~L~l~~~~ 750 (887)
.. ..+..+++|+.|++++|.
T Consensus 164 ~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 164 NT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp BC---TTSTTCCCCCEEEEEEEE
T ss_pred ch---HHhccCCCCCEEeCCCCc
Confidence 22 345556666666666553
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.93 E-value=1e-09 Score=110.97 Aligned_cols=130 Identities=18% Similarity=0.230 Sum_probs=93.2
Q ss_pred CCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccc-cccccccceeecCCCceeeecCccccccchh-h
Q 048733 571 DSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEG-VGNLFNLHLLNARNTKILDLAHTFVSELPEE-I 648 (887)
Q Consensus 571 ~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~-i 648 (887)
.++++.|.+.++.. ..+.+..|.++++|++|+|++|.+..+|.. +..+++|++|+|++| .+..+|.. +
T Consensus 39 ~~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N--------~l~~l~~~~~ 108 (229)
T 3e6j_A 39 PTNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN--------QLTVLPSAVF 108 (229)
T ss_dssp CTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------CCCCCCTTTT
T ss_pred CCCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC--------cCCccChhHh
Confidence 37788888887765 334456778888888888888888877744 578888888887765 46677665 4
Q ss_pred hcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEecc
Q 048733 649 RNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQN 725 (887)
Q Consensus 649 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 725 (887)
..+++|++|++++| .+..+|..++.+++|++|+ ++.+.+.......+..+++|+.|++.+|.
T Consensus 109 ~~l~~L~~L~Ls~N-----------~l~~lp~~~~~l~~L~~L~----L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 109 DRLVHLKELFMCCN-----------KLTELPRGIERLTHLTHLA----LDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCTTCCEEECCSS-----------CCCSCCTTGGGCTTCSEEE----CCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcchhhCeEeccCC-----------cccccCcccccCCCCCEEE----CCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 67888888888887 4556777777788888777 66666554444446666777777766543
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.92 E-value=7.8e-10 Score=103.46 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=76.8
Q ss_pred CCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccc-cchhhh
Q 048733 571 DSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSE-LPEEIR 649 (887)
Q Consensus 571 ~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~-lp~~i~ 649 (887)
.++++.|.+.++... +..++..+..+++|++|++++|.+..+ ..++.+++|++|++++|. +.. +|..+.
T Consensus 16 ~~~l~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~--------i~~~~~~~~~ 85 (149)
T 2je0_A 16 PSDVKELVLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR--------VSGGLEVLAE 85 (149)
T ss_dssp GGGCSEEECTTCBCB-TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC--------CCSCTHHHHH
T ss_pred CccCeEEEccCCcCC-hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc--------ccchHHHHhh
Confidence 456777777666541 123445667778888888888877766 567777778777777653 555 666666
Q ss_pred cccccCeeeecccccccccccchhhhhhc--cCCccccccccccccccccCceecchHHH---HHhhccccccceeE
Q 048733 650 NLKKLRSLIVFHYKYITGSIIPTEAAAKI--HRGFGSLRGLQSLRGLLALPTIEADSQVL---KELMMLRQLNMLSI 721 (887)
Q Consensus 650 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--p~~i~~L~~L~~L~~~~~l~~~~~~~~~~---~~l~~l~~L~~L~l 721 (887)
++++|++|++++| ....+ |..++.+++|++|+ ++.+.+..... ..+..+++|+.|++
T Consensus 86 ~l~~L~~L~ls~N-----------~i~~~~~~~~~~~l~~L~~L~----l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 86 KCPNLTHLNLSGN-----------KIKDLSTIEPLKKLENLKSLD----LFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HCTTCCEEECTTS-----------CCCSHHHHGGGGGCTTCCEEE----CTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred hCCCCCEEECCCC-----------cCCChHHHHHHhhCCCCCEEe----CcCCcccchHHHHHHHHHHCCCcccccC
Confidence 7788888888776 22222 24456666666665 44554433222 34555555555544
No 126
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.92 E-value=3.3e-10 Score=112.77 Aligned_cols=52 Identities=15% Similarity=0.216 Sum_probs=36.2
Q ss_pred EEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchh-hhcccccCeeeeccc
Q 048733 601 KVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEE-IRNLKKLRSLIVFHY 662 (887)
Q Consensus 601 r~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~-i~~l~~L~~L~l~~~ 662 (887)
+.++.+++.+..+|..+ ..+|++|++++ |.+..+|.. +.++++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~--------n~l~~~~~~~~~~l~~L~~L~l~~n 62 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLET--------NSLKSLPNGVFDELTSLTQLYLGGN 62 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCS--------SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCC--------CccCcCChhhhcccccCcEEECCCC
Confidence 46777777787777554 34666666654 567777664 467888888888876
No 127
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=8.7e-09 Score=110.25 Aligned_cols=185 Identities=18% Similarity=0.186 Sum_probs=115.5
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCc-eeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFS-CRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
..++|++..++.+.+++..+.. +.+.|+|++|+||||+|+.+++... ...+. ..+++..+..... +.+++++..+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~ 96 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGI-DVVRNQIKHF 96 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSH-HHHHTHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccCh-HHHHHHHHHH
Confidence 4689999999999999987642 2388999999999999999988421 11111 2333433332222 2222333322
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-CCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEE
Q 048733 250 HRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-KDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRII 326 (887)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ii 326 (887)
..... .+ .+++.++|+||++.. +.++.+...+.....++.+|
T Consensus 97 ~~~~~-----------------------------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~i 141 (323)
T 1sxj_B 97 AQKKL-----------------------------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFA 141 (323)
T ss_dssp HHBCC-----------------------------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEE
T ss_pred Hhccc-----------------------------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEE
Confidence 21100 01 346889999999764 45555666665555677888
Q ss_pred EEccchhH-HhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCch-HHHHHhh
Q 048733 327 VTTRHMNV-AKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPL-AIVAVGG 401 (887)
Q Consensus 327 vTtR~~~v-~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~~ 401 (887)
+||+.... ..... .....+.+.+++.++..+++...+...+. . -..+....|++.|+|.|. |+..+..
T Consensus 142 l~~~~~~~l~~~l~--sr~~~i~~~~~~~~~~~~~l~~~~~~~~~--~---~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 142 FACNQSNKIIEPLQ--SQCAILRYSKLSDEDVLKRLLQIIKLEDV--K---YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEESCGGGSCHHHH--TTSEEEECCCCCHHHHHHHHHHHHHHHTC--C---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEeCChhhchhHHH--hhceEEeecCCCHHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 88866432 11111 12268999999999999999886532110 1 114567889999999995 4444433
No 128
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.90 E-value=4.6e-10 Score=111.71 Aligned_cols=58 Identities=26% Similarity=0.320 Sum_probs=48.7
Q ss_pred CceeEEEEecCCCCCCCccc-cccccccceeecCCCceeeecCccccccchh-hhcccccCeeeeccc
Q 048733 597 FKLMKVLDLEDSPINYLPEG-VGNLFNLHLLNARNTKILDLAHTFVSELPEE-IRNLKKLRSLIVFHY 662 (887)
Q Consensus 597 ~~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~-i~~l~~L~~L~l~~~ 662 (887)
.++|++|+|++|.+..+|.. +..+++|++|++++| .+..+|.. +.++++|++|++++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN--------KLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS--------CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC--------ccCccChhhcCCCCCcCEEECCCC
Confidence 45799999999999988754 689999999998876 47777765 468999999999987
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.89 E-value=1.3e-09 Score=109.33 Aligned_cols=128 Identities=18% Similarity=0.266 Sum_probs=83.3
Q ss_pred CceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCC-ccccccccccceeecCCCceeeecCccccccchhh-h
Q 048733 572 SKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYL-PEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEI-R 649 (887)
Q Consensus 572 ~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i-~ 649 (887)
++++.|.+.++.. ..+.+..|..+++|++|+|++|.+..+ |..+.++++|++|+|++| .+..+|..+ .
T Consensus 32 ~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N--------~l~~l~~~~f~ 101 (220)
T 2v9t_B 32 ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN--------KITELPKSLFE 101 (220)
T ss_dssp TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS--------CCCCCCTTTTT
T ss_pred cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC--------cCCccCHhHcc
Confidence 5677777777655 234445677778888888888887755 667778888887777765 466777654 5
Q ss_pred cccccCeeeecccccccccccchhhhhhc-cCCccccccccccccccccCceecchHHHHHhhccccccceeEEec
Q 048733 650 NLKKLRSLIVFHYKYITGSIIPTEAAAKI-HRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQ 724 (887)
Q Consensus 650 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 724 (887)
.+++|++|++++| ....+ |..++.+++|+.|+ ++.+.+.......+..+++|+.|++++|
T Consensus 102 ~l~~L~~L~L~~N-----------~l~~~~~~~~~~l~~L~~L~----L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 102 GLFSLQLLLLNAN-----------KINCLRVDAFQDLHNLNLLS----LYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TCTTCCEEECCSS-----------CCCCCCTTTTTTCTTCCEEE----CCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC-----------CCCEeCHHHcCCCCCCCEEE----CCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 6788888888876 23333 34466677777766 5555554444444555666666666553
No 130
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.89 E-value=1.2e-08 Score=109.25 Aligned_cols=264 Identities=19% Similarity=0.144 Sum_probs=142.2
Q ss_pred CccccchhcHHHHHHHHhcC---CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNG---RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (887)
..++|++..++++..++... ......+.|+|++|+|||+||+.+++. .... .+++..+.....
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~--------- 77 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKP--------- 77 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSH---------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCCh---------
Confidence 46999999999988877631 122356889999999999999999884 2222 233433222111
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh--HHHHHHHhcCCCC-----
Q 048733 248 EFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID--FWRDVEHALLDNK----- 320 (887)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~----- 320 (887)
.++...+...+ .+..+|+||++.... ....+...+....
T Consensus 78 ---------------------------------~~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~ 123 (324)
T 1hqc_A 78 ---------------------------------GDLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVI 123 (324)
T ss_dssp ---------------------------------HHHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECC
T ss_pred ---------------------------------HHHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhc
Confidence 11111111111 356789999997653 3444443332110
Q ss_pred -------------CCcEEEEEccchh-HHhhhccCCCc-ceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHH
Q 048733 321 -------------KCSRIIVTTRHMN-VAKFCKLSSSV-RIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDI 385 (887)
Q Consensus 321 -------------~gs~iivTtR~~~-v~~~~~~~~~~-~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I 385 (887)
.+..+|.||.... +.... .... ..+.+.+++.++..+++.+.+..... . -..+....|
T Consensus 124 ~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l--~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~--~---~~~~~~~~l 196 (324)
T 1hqc_A 124 GQGPAARTIRLELPRFTLIGATTRPGLITAPL--LSRFGIVEHLEYYTPEELAQGVMRDARLLGV--R---ITEEAALEI 196 (324)
T ss_dssp SSSSSCCCEEEECCCCEEEEEESCCSSCSCST--TTTCSCEEECCCCCHHHHHHHHHHHHHTTTC--C---CCHHHHHHH
T ss_pred cccccccccccCCCCEEEEEeCCCcccCCHHH--HhcccEEEecCCCCHHHHHHHHHHHHHhcCC--C---CCHHHHHHH
Confidence 2345666665432 11111 1112 57899999999999999887643321 1 124667889
Q ss_pred HHHhCCCchHHHHHhhhhcCC-------CCCHHHHHHHHHHhccccCCCCCccchHHHHhhcccCCChhhHHHHhhhcc-
Q 048733 386 LAKCGGLPLAIVAVGGLLSTK-------NRIVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYYDLPHHLKSCLLYFGL- 457 (887)
Q Consensus 386 ~~~c~G~PLai~~~~~~l~~~-------~~~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~Lp~~~k~cf~~~s~- 457 (887)
++.++|+|-.+..+...+... .-+......+..... ..+..++...+..+..+.-
T Consensus 197 ~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~-----------------~~~~~l~~~e~~~i~~~~~~ 259 (324)
T 1hqc_A 197 GRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALG-----------------LDELGLEKRDREILEVLILR 259 (324)
T ss_dssp HHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHT-----------------CCTTCCCHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc-----------------ccccCCCHHHHHHHHHHHHH
Confidence 999999998776655443211 123444444443321 1223344433333333221
Q ss_pred cCCC----------cccChhHHHH----HHHHcCcccc-CCCCCHHHHHHHHHH-HHhhcCCeee
Q 048733 458 FPES----------CKINRGRLIR----LWIAEGLVQY-SKRFTSEQVAAEYLD-ELIDRSLVQV 506 (887)
Q Consensus 458 fp~~----------~~i~~~~li~----~w~a~g~i~~-~~~~~~e~~~~~~l~-~L~~~sll~~ 506 (887)
|..+ ..+++..+.+ .-+..|++.. ..+....+.|.+||+ ++.+|+|+|+
T Consensus 260 ~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 260 FGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp SCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred hcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 2111 1133333333 2456788753 345566777888887 8888888875
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.88 E-value=2e-09 Score=103.03 Aligned_cols=82 Identities=20% Similarity=0.204 Sum_probs=56.9
Q ss_pred CCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccc-cchhhh
Q 048733 571 DSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSE-LPEEIR 649 (887)
Q Consensus 571 ~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~-lp~~i~ 649 (887)
.++++.|.+.++... +..++..+..+++|++|+|++|.+..+ ..++.+++|++|++++|. +.. +|..+.
T Consensus 23 ~~~L~~L~l~~n~l~-~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~--------l~~~~~~~~~ 92 (168)
T 2ell_A 23 PAAVRELVLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR--------IFGGLDMLAE 92 (168)
T ss_dssp TTSCSEEECCSCBCB-TTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC--------CCSCCCHHHH
T ss_pred cccCCEEECCCCCCC-hhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc--------CchHHHHHHh
Confidence 466777777766541 123445567778888888888887766 667778888877777653 555 666666
Q ss_pred cccccCeeeeccc
Q 048733 650 NLKKLRSLIVFHY 662 (887)
Q Consensus 650 ~l~~L~~L~l~~~ 662 (887)
++++|++|++++|
T Consensus 93 ~l~~L~~L~Ls~N 105 (168)
T 2ell_A 93 KLPNLTHLNLSGN 105 (168)
T ss_dssp HCTTCCEEECBSS
T ss_pred hCCCCCEEeccCC
Confidence 7888888888876
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.87 E-value=1.1e-10 Score=138.71 Aligned_cols=153 Identities=12% Similarity=0.034 Sum_probs=73.1
Q ss_pred CCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchhhhhhccCCccccccccc
Q 048733 611 NYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQS 690 (887)
Q Consensus 611 ~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~ 690 (887)
...|..+..+.+|+.|+|++| .+..+|..+.++++|++|+|++| .+..+|..|++|++|++
T Consensus 214 ~~~~~~~~~l~~L~~L~Ls~n--------~l~~l~~~~~~l~~L~~L~Ls~N-----------~l~~lp~~~~~l~~L~~ 274 (727)
T 4b8c_D 214 VMPKDSKYDDQLWHALDLSNL--------QIFNISANIFKYDFLTRLYLNGN-----------SLTELPAEIKNLSNLRV 274 (727)
T ss_dssp --------CCCCCCEEECTTS--------CCSCCCGGGGGCCSCSCCBCTTS-----------CCSCCCGGGGGGTTCCE
T ss_pred ecChhhhccCCCCcEEECCCC--------CCCCCChhhcCCCCCCEEEeeCC-----------cCcccChhhhCCCCCCE
Confidence 334556667777777766654 36667777777777777777776 33345544555555555
Q ss_pred cccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCccccccccccee
Q 048733 691 LRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYL 770 (887)
Q Consensus 691 L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L 770 (887)
|+ |++|... .++..+.++++|+.|+|++|..... + ..+...+ +|+.|
T Consensus 275 L~----------------------------Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~l-p-~~~~~l~-~L~~L 321 (727)
T 4b8c_D 275 LD----------------------------LSHNRLT--SLPAELGSCFQLKYFYFFDNMVTTL-P-WEFGNLC-NLQFL 321 (727)
T ss_dssp EE----------------------------CTTSCCS--SCCSSGGGGTTCSEEECCSSCCCCC-C-SSTTSCT-TCCCE
T ss_pred Ee----------------------------CcCCcCC--ccChhhcCCCCCCEEECCCCCCCcc-C-hhhhcCC-CccEE
Confidence 44 3332211 2334455566666666666544321 1 1233333 67777
Q ss_pred EEeecc--CCCChhhhcCC-CcceeEEEecccCCcCcCcCcccceeeeCcC
Q 048733 771 SLRGNM--KKLPDWILKLK-NLIGSRLILSGLTEDPISWFPKLRKLVLLNF 818 (887)
Q Consensus 771 ~L~~~~--~~lp~~~~~l~-~L~~L~L~~~~l~~~~~~~~~~L~~L~l~~~ 818 (887)
+|++|. +.+|.++..+. .+..|+|++|.+....+. .|+.|.+..+
T Consensus 322 ~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---~l~~l~l~~n 369 (727)
T 4b8c_D 322 GVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---ERRFIEINTD 369 (727)
T ss_dssp ECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---C---------
T ss_pred eCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc---ccceeEeecc
Confidence 776653 23455554332 123356667766554332 4455555543
No 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.84 E-value=2.7e-09 Score=106.96 Aligned_cols=128 Identities=11% Similarity=0.169 Sum_probs=86.7
Q ss_pred CceeEEEeecCCCCCccc-cccccCCCceeEEEEecCCCCCCCcc-ccccccccceeecCCCceeeecCccccccchh-h
Q 048733 572 SKVRSVILFNVDKLPDSF-VKSCIANFKLMKVLDLEDSPINYLPE-GVGNLFNLHLLNARNTKILDLAHTFVSELPEE-I 648 (887)
Q Consensus 572 ~~lrsL~~~~~~~~~~~~-~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~-i 648 (887)
..++.|.+.++.. ... ....|.++++|++|+|++|.++.++. .+..+++|++|+|++| .+..+|.. +
T Consensus 32 ~~~~~L~L~~N~l--~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N--------~l~~~~~~~~ 101 (220)
T 2v70_A 32 QYTAELRLNNNEF--TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN--------RLENVQHKMF 101 (220)
T ss_dssp TTCSEEECCSSCC--CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--------CCCCCCGGGG
T ss_pred CCCCEEEcCCCcC--CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC--------ccCccCHhHh
Confidence 4567777777654 222 23457788888888888888886654 6788888888877765 36666554 6
Q ss_pred hcccccCeeeecccccccccccchhhhhhc-cCCccccccccccccccccCceecchHHHHHhhccccccceeEEec
Q 048733 649 RNLKKLRSLIVFHYKYITGSIIPTEAAAKI-HRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQ 724 (887)
Q Consensus 649 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 724 (887)
.++++|++|++++| ....+ |..+..+++|+.|+ ++.+.+....+..+..+++|+.|++++|
T Consensus 102 ~~l~~L~~L~Ls~N-----------~l~~~~~~~~~~l~~L~~L~----L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 102 KGLESLKTLMLRSN-----------RITCVGNDSFIGLSSVRLLS----LYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TTCSSCCEEECTTS-----------CCCCBCTTSSTTCTTCSEEE----CTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred cCCcCCCEEECCCC-----------cCCeECHhHcCCCccCCEEE----CCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 67888888888887 33333 45577777777777 6666665555555666777777776654
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.82 E-value=1.2e-09 Score=102.27 Aligned_cols=128 Identities=17% Similarity=0.140 Sum_probs=84.7
Q ss_pred CCCceeEEEEecCCCCC--CCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccch
Q 048733 595 ANFKLMKVLDLEDSPIN--YLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPT 672 (887)
Q Consensus 595 ~~~~~Lr~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 672 (887)
...+.|+.|++++|.+. .+|..++.+++|++|++++|. +..+ ..+.++++|++|++++|
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--------l~~~-~~~~~l~~L~~L~Ls~n---------- 74 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG--------LTSI-ANLPKLNKLKKLELSDN---------- 74 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC--------CCCC-TTCCCCTTCCEEECCSS----------
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC--------CCCc-hhhhcCCCCCEEECCCC----------
Confidence 34578999999999998 889888999999999998764 5555 66788999999999987
Q ss_pred hhhhh-ccCCccccccccccccccccCceecchH-HHHHhhccccccceeEEeccCChhH--HHHHHhcccCCcEEEE
Q 048733 673 EAAAK-IHRGFGSLRGLQSLRGLLALPTIEADSQ-VLKELMMLRQLNMLSIRRQNGNGRD--LCALIANLENVETLGV 746 (887)
Q Consensus 673 ~~~~~-~p~~i~~L~~L~~L~~~~~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~--l~~~l~~~~~L~~L~l 746 (887)
.... +|..++.+++|++|+ ++.+.+... .+..++.+++|+.|+++++...... ....+..+++|+.|++
T Consensus 75 -~i~~~~~~~~~~l~~L~~L~----ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 75 -RVSGGLEVLAEKCPNLTHLN----LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp -CCCSCTHHHHHHCTTCCEEE----CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred -cccchHHHHhhhCCCCCEEE----CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 2222 444455566677666 555555442 3355666666666666653221110 1134555666666554
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.81 E-value=1.2e-09 Score=104.49 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=86.2
Q ss_pred CCCceeEEEEecCCCCC--CCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccch
Q 048733 595 ANFKLMKVLDLEDSPIN--YLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPT 672 (887)
Q Consensus 595 ~~~~~Lr~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 672 (887)
...+.|++|+|++|.+. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~--------l~~~-~~~~~l~~L~~L~Ls~N---------- 81 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG--------LISV-SNLPKLPKLKKLELSEN---------- 81 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC--------CCCC-SSCCCCSSCCEEEEESC----------
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC--------CCCh-hhhccCCCCCEEECcCC----------
Confidence 34578999999999998 899889999999999988764 5555 67788999999999998
Q ss_pred hhhhh-ccCCccccccccccccccccCceecchH-HHHHhhccccccceeEEeccCChh--HHHHHHhcccCCcEEEEee
Q 048733 673 EAAAK-IHRGFGSLRGLQSLRGLLALPTIEADSQ-VLKELMMLRQLNMLSIRRQNGNGR--DLCALIANLENVETLGVLM 748 (887)
Q Consensus 673 ~~~~~-~p~~i~~L~~L~~L~~~~~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~--~l~~~l~~~~~L~~L~l~~ 748 (887)
.... +|..++.+++|+.|+ ++.+.+... .+..+..+++|+.|+++++..... .....+..+++|+.|++..
T Consensus 82 -~l~~~~~~~~~~l~~L~~L~----Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 82 -RIFGGLDMLAEKLPNLTHLN----LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp -CCCSCCCHHHHHCTTCCEEE----CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred -cCchHHHHHHhhCCCCCEEe----ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 2222 343344566777666 555554332 224455666666666655322111 0112455566666666665
Q ss_pred cC
Q 048733 749 KS 750 (887)
Q Consensus 749 ~~ 750 (887)
|.
T Consensus 157 n~ 158 (168)
T 2ell_A 157 RE 158 (168)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 136
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.81 E-value=2.8e-09 Score=107.62 Aligned_cols=57 Identities=26% Similarity=0.288 Sum_probs=36.7
Q ss_pred ceeEEEEecCCCCCCC-ccccccccccceeecCCCceeeecCccccccchh-hhcccccCeeeeccc
Q 048733 598 KLMKVLDLEDSPINYL-PEGVGNLFNLHLLNARNTKILDLAHTFVSELPEE-IRNLKKLRSLIVFHY 662 (887)
Q Consensus 598 ~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~-i~~l~~L~~L~l~~~ 662 (887)
++|++|+|++|.+..+ |..+..+++|++|+|++| .+..+|.. +.++++|++|++++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N--------~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN--------QLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC--------CCCCcChhhcccCCCcCEEECCCC
Confidence 5667777777777655 455667777777666654 35566544 356777777777765
No 137
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.78 E-value=9e-09 Score=103.16 Aligned_cols=125 Identities=18% Similarity=0.173 Sum_probs=81.7
Q ss_pred cCCcEEEEeecCCccccccCcccccccccceeEEeecc-CC-CChhhhcCCCcceeEEEecccCCcCc---CcCccccee
Q 048733 739 ENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KK-LPDWILKLKNLIGSRLILSGLTEDPI---SWFPKLRKL 813 (887)
Q Consensus 739 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~-lp~~~~~l~~L~~L~L~~~~l~~~~~---~~~~~L~~L 813 (887)
++|+.|++++|....... ..+...+ +|+.|+|++|. .. .|..+..+++|++|+|++|.+...+. ..+++|+.|
T Consensus 32 ~~l~~L~l~~n~i~~i~~-~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPP-GAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCCCEECT-TSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCCcCH-hHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence 456677776665443221 2333333 77777777763 33 36667777888888888877766543 356777777
Q ss_pred eeCcCCCceeE-EEcCCCccCccEEEEccCCCCCccc-cccccCCCCCEEEEEech
Q 048733 814 VLLNFEAVKSV-IIEKGAMPDIRELWIGPCPLLMEIP-IGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 814 ~l~~~~~l~~~-~~~~~~lp~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~ 867 (887)
++.++. +..+ +..+..+++|+.|++++|. ++.+| ..+..+++|+.|++++||
T Consensus 110 ~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 110 LLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 777764 3433 3346678888888888887 44444 457788888888888877
No 138
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.77 E-value=8.7e-09 Score=103.26 Aligned_cols=126 Identities=13% Similarity=0.074 Sum_probs=74.8
Q ss_pred CCcEEEEeecCCccccccCcccccccccceeEEeecc-CCC-ChhhhcCCCcceeEEEecccCCcCc---CcCcccceee
Q 048733 740 NVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNM-KKL-PDWILKLKNLIGSRLILSGLTEDPI---SWFPKLRKLV 814 (887)
Q Consensus 740 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~l-p~~~~~l~~L~~L~L~~~~l~~~~~---~~~~~L~~L~ 814 (887)
.++.|++++|..........+...+ +|+.|+|++|. ..+ |..+..+++|+.|+|++|.+...+. ..+++|++|+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 3456666655443322211223333 66677776653 333 3356667777777777777665443 3566677777
Q ss_pred eCcCCCceeE-EEcCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 815 LLNFEAVKSV-IIEKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 815 l~~~~~l~~~-~~~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
+.++. +..+ +..+..+++|+.|++++|......|..+..+++|+.|++++||
T Consensus 112 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 112 LRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 76654 3333 3445667788888887776444446677778888888887776
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.77 E-value=6e-09 Score=100.44 Aligned_cols=81 Identities=21% Similarity=0.258 Sum_probs=44.4
Q ss_pred CCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhh-
Q 048733 570 KDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEI- 648 (887)
Q Consensus 570 ~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i- 648 (887)
.+++++.|.+.++... . ++.+....++|++|+|++|.++.+ ..++.+++|++|++++| .+..+|..+
T Consensus 17 ~~~~L~~L~l~~n~l~--~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N--------~l~~~~~~~~ 84 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP--V-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN--------RICRIGEGLD 84 (176)
T ss_dssp CTTSCEEEECTTSCCC--S-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS--------CCCEECSCHH
T ss_pred CcCCceEEEeeCCCCc--h-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC--------cccccCcchh
Confidence 4555666666555431 1 122222233666666666666655 45566666666665554 355555444
Q ss_pred hcccccCeeeeccc
Q 048733 649 RNLKKLRSLIVFHY 662 (887)
Q Consensus 649 ~~l~~L~~L~l~~~ 662 (887)
..+++|++|++++|
T Consensus 85 ~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 85 QALPDLTELILTNN 98 (176)
T ss_dssp HHCTTCCEEECCSC
T ss_pred hcCCCCCEEECCCC
Confidence 56666666666665
No 140
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.76 E-value=3.1e-09 Score=115.58 Aligned_cols=173 Identities=21% Similarity=0.202 Sum_probs=106.0
Q ss_pred EEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhh--cccccCeeeecccccccccccchhhhhhc
Q 048733 601 KVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIR--NLKKLRSLIVFHYKYITGSIIPTEAAAKI 678 (887)
Q Consensus 601 r~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 678 (887)
++++++++.+..+|..+.. ++++|+| ++|.+..+|.... ++++|++|++++| .+..+
T Consensus 21 ~~l~c~~~~l~~iP~~~~~--~l~~L~L--------s~N~l~~l~~~~~~~~l~~L~~L~L~~N-----------~i~~i 79 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPS--YTALLDL--------SHNNLSRLRAEWTPTRLTNLHSLLLSHN-----------HLNFI 79 (361)
T ss_dssp TEEECCSSCCSSCCSSCCT--TCSEEEC--------CSSCCCEECTTSSSSCCTTCCEEECCSS-----------CCCEE
T ss_pred CEEEeCCCCcCccCccCCC--CCCEEEC--------CCCCCCccChhhhhhcccccCEEECCCC-----------cCCcc
Confidence 5899999999999976643 3555555 4568998887654 8999999999998 44455
Q ss_pred cC-CccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccc-
Q 048733 679 HR-GFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILD- 756 (887)
Q Consensus 679 p~-~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~- 756 (887)
+. .+..+++|+.|+ ++.+.+.......+..+++|+.|+++++.... ..+..+.++++|+.|++++|.......
T Consensus 80 ~~~~~~~l~~L~~L~----Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 80 SSEAFVPVPNLRYLD----LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp CTTTTTTCTTCCEEE----CCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred ChhhccCCCCCCEEE----CCCCcCCcCCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 53 478888888888 66666654444456667777777776543221 113345566666777666664433211
Q ss_pred -cCcccccccccceeEEeecc-CCCC-hhhhcCCC--cceeEEEecccC
Q 048733 757 -LQSLSSPPQHLQYLSLRGNM-KKLP-DWILKLKN--LIGSRLILSGLT 800 (887)
Q Consensus 757 -l~~l~~~~~~L~~L~L~~~~-~~lp-~~~~~l~~--L~~L~L~~~~l~ 800 (887)
+..+...+ +|+.|+|++|. ..+| ..+..+++ |+.|+|.+|.+.
T Consensus 155 ~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 155 LIKDGNKLP-KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GTC----CT-TCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HhcCcccCC-cCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 11111223 66666666653 4444 23444554 356666666543
No 141
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.75 E-value=9.1e-09 Score=111.83 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=35.9
Q ss_pred CCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCcc-ccccccccceeecCCCceeeecCcccccc-chh
Q 048733 570 KDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPE-GVGNLFNLHLLNARNTKILDLAHTFVSEL-PEE 647 (887)
Q Consensus 570 ~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~Ldl~~~~l~~l-p~~ 647 (887)
.+++|+.|.+.++.. ..+.+..|.++++|++|+|++|.+..+|. .+..+.+|++|+|++| .+..+ |..
T Consensus 62 ~l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--------~i~~~~~~~ 131 (361)
T 2xot_A 62 RLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN--------HIVVVDRNA 131 (361)
T ss_dssp CCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--------CCCEECTTT
T ss_pred cccccCEEECCCCcC--CccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC--------cccEECHHH
Confidence 344444444444433 12222334444444444444444443332 2344444444444433 24433 334
Q ss_pred hhcccccCeeeeccc
Q 048733 648 IRNLKKLRSLIVFHY 662 (887)
Q Consensus 648 i~~l~~L~~L~l~~~ 662 (887)
+.++++|++|++++|
T Consensus 132 ~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 132 FEDMAQLQKLYLSQN 146 (361)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hCCcccCCEEECCCC
Confidence 445555555555554
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.74 E-value=9.4e-10 Score=108.44 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=76.7
Q ss_pred ccccCCCceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeeccccccccccc
Q 048733 591 KSCIANFKLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSII 670 (887)
Q Consensus 591 ~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 670 (887)
+..+.++++|++|+|++|.+..+| .+..+++|++|++++| .+..+|..+..+++|++|++++|
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n--------~l~~l~~~~~~~~~L~~L~L~~N-------- 103 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN--------LIKKIENLDAVADTLEELWISYN-------- 103 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE--------EECSCSSHHHHHHHCSEEEEEEE--------
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC--------CcccccchhhcCCcCCEEECcCC--------
Confidence 346777888888888888888887 7888888888877754 46677877777888888888887
Q ss_pred chhhhhhccCCccccccccccccccccCceecchH-HHHHhhccccccceeEEec
Q 048733 671 PTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQ-VLKELMMLRQLNMLSIRRQ 724 (887)
Q Consensus 671 ~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~ 724 (887)
....+| .++.+++|+.|+ ++.+.+... .+..+..+++|+.|+++++
T Consensus 104 ---~l~~l~-~~~~l~~L~~L~----l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 104 ---QIASLS-GIEKLVNLRVLY----MSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp ---ECCCHH-HHHHHHHSSEEE----ESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred ---cCCcCC-ccccCCCCCEEE----CCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 233334 466667777776 556665443 2355667777777777653
No 143
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.72 E-value=7.3e-08 Score=103.21 Aligned_cols=184 Identities=19% Similarity=0.145 Sum_probs=113.2
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCC-ceeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF-SCRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
..++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++... ...+ ...+.+..+..... +.+++.+..+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 100 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGI-NVIREKVKEF 100 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHH-HTTHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCch-HHHHHHHHHH
Confidence 468999999999999988764 33488999999999999999988421 1111 11223332221000 1111111111
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEE
Q 048733 250 HRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIV 327 (887)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 327 (887)
.... ....+++.++|+||++.. +.++.+...+.....++++|+
T Consensus 101 ~~~~-----------------------------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~ 145 (327)
T 1iqp_A 101 ARTK-----------------------------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFIL 145 (327)
T ss_dssp HHSC-----------------------------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEE
T ss_pred HhhC-----------------------------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 1000 001256789999999764 456667666655556788888
Q ss_pred EccchhH-HhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHh
Q 048733 328 TTRHMNV-AKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVG 400 (887)
Q Consensus 328 TtR~~~v-~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 400 (887)
||..... ...... ....+.+.+++.++..+++.+.+...+ ..-..+....|++.++|.|..+..+.
T Consensus 146 ~~~~~~~l~~~l~s--r~~~~~~~~l~~~~~~~~l~~~~~~~~-----~~~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 146 SCNYSSKIIEPIQS--RCAIFRFRPLRDEDIAKRLRYIAENEG-----LELTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp EESCGGGSCHHHHH--TEEEEECCCCCHHHHHHHHHHHHHTTT-----CEECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred EeCCccccCHHHHh--hCcEEEecCCCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 8876432 111111 125789999999999999988764322 11224667889999999998655443
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=7.9e-09 Score=110.80 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=79.2
Q ss_pred ccCCcEEEEeecCCccccccCcccccccccceeEEeec-cCCCCh-hhhcCCCcceeEEEecccCC---cCcCcCcccc-
Q 048733 738 LENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGN-MKKLPD-WILKLKNLIGSRLILSGLTE---DPISWFPKLR- 811 (887)
Q Consensus 738 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~lp~-~~~~l~~L~~L~L~~~~l~~---~~~~~~~~L~- 811 (887)
..++..+.+.+.-... ....+...+++|+.|+|.++ ...+|. .|.+|++|+.|+|.++ +.. ..+.++++|+
T Consensus 201 ~~~~~~l~~~~~l~~~--~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNA--DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp GGGCSEEEEEECCCHH--HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred ccccceEEEeeeecHH--HHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence 4566777776542111 11222222348899999875 556654 4567889999999886 443 3344667777
Q ss_pred eeeeCcCCCceeEE-EcCCCccCccEEEEccCCCCCcccc-ccccCCCCCEEE
Q 048733 812 KLVLLNFEAVKSVI-IEKGAMPDIRELWIGPCPLLMEIPI-GIDHLRNLELLT 862 (887)
Q Consensus 812 ~L~l~~~~~l~~~~-~~~~~lp~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~ 862 (887)
.|.+.+ .++.++ ..+..+++|+.|++.++. ++.++. .+.+|++|+.|+
T Consensus 278 ~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 278 TLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred EEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 777776 566664 346678999999997776 666655 778999999886
No 145
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.66 E-value=2.9e-08 Score=95.58 Aligned_cols=122 Identities=14% Similarity=0.133 Sum_probs=92.3
Q ss_pred CCCCceEEEEecCCCccccccCCCC-ceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCcccc-ccccccce
Q 048733 548 HCSKTRRITIQRSIDDGALESIKDS-KVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGV-GNLFNLHL 625 (887)
Q Consensus 548 ~~~~~r~lsi~~~~~~~~~~~~~~~-~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i-~~L~~L~~ 625 (887)
.+..++.+.+.++..........+. +|+.|.+.++... .+ ..+..+++|++|+|++|.+..+|..+ +.+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~--~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR--KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCC--EE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCC--cc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4567888988876554332333344 9999999998762 22 57889999999999999999988665 89999999
Q ss_pred eecCCCceeeecCccccccch--hhhcccccCeeeecccccccccccchhhhhhccCC----ccccccccccc
Q 048733 626 LNARNTKILDLAHTFVSELPE--EIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRG----FGSLRGLQSLR 692 (887)
Q Consensus 626 L~L~~~~~Ldl~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~----i~~L~~L~~L~ 692 (887)
|++++| .+..+|. .+.++++|++|++++| ....+|.. ++.+++|+.|+
T Consensus 93 L~L~~N--------~i~~~~~~~~l~~l~~L~~L~l~~N-----------~i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 93 LILTNN--------SLVELGDLDPLASLKSLTYLCILRN-----------PVTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp EECCSC--------CCCCGGGGGGGGGCTTCCEEECCSS-----------GGGGSTTHHHHHHHHCTTCSEET
T ss_pred EECCCC--------cCCcchhhHhhhcCCCCCEEEecCC-----------CCCCcHhHHHHHHHHCCccceeC
Confidence 999876 4778887 7889999999999998 34444543 55566666665
No 146
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.62 E-value=2.8e-07 Score=96.07 Aligned_cols=174 Identities=9% Similarity=0.047 Sum_probs=104.4
Q ss_pred ccccchhcHHHHHHHHhcC--CCCcEEEEEEccCCCCHHHHHHHHhcccCccC------CCceeEEEEeCCCCCHHHHHH
Q 048733 172 EVVGIESIKDKLIDLMLNG--RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKT------HFSCRAWVTVGKEYNKNDLLR 243 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------~F~~~~wv~v~~~~~~~~~~~ 243 (887)
.+.|||+++++|...|... .+....+.|+|++|+|||++|+.|++...... .| ..+.++.....+...++.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHH
Confidence 4889999999999888763 34466889999999999999999998632111 12 345677777788889999
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH--hCCCceEEEEeccCChhHHHHHHHhc--C--
Q 048733 244 TIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH--LKDKSYMVVLDDVWKIDFWRDVEHAL--L-- 317 (887)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--L~~kr~LlVlDdv~~~~~~~~l~~~l--~-- 317 (887)
.|++++.+... ......+.+...+... -.++++++|||+++....-+.+...+ +
T Consensus 100 ~I~~~L~g~~~--------------------~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~ 159 (318)
T 3te6_A 100 KIWFAISKENL--------------------CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISS 159 (318)
T ss_dssp HHHHHHSCCC----------------------CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHC
T ss_pred HHHHHhcCCCC--------------------CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccc
Confidence 99999864311 0111223343333332 24567999999997653212222222 1
Q ss_pred CCCCCcEEEEEccch--h--HHhhhccCCCcceeecCCCChhhHHHHHHHhhc
Q 048733 318 DNKKCSRIIVTTRHM--N--VAKFCKLSSSVRIHELETLPPDEAWKLFCRKAF 366 (887)
Q Consensus 318 ~~~~gs~iivTtR~~--~--v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 366 (887)
...+.+-|.|+.... . +............+.++|++.++-.+++.+++-
T Consensus 160 ~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 160 KNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp SSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 122222223332221 1 111110001115789999999999999998763
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.61 E-value=2.4e-08 Score=97.67 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=16.0
Q ss_pred cCCCceeEEEEecCCCCCCC-ccccccccccceeecCC
Q 048733 594 IANFKLMKVLDLEDSPINYL-PEGVGNLFNLHLLNARN 630 (887)
Q Consensus 594 ~~~~~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~ 630 (887)
|.++++|++|+|++|.++.+ |..+..+++|++|+|++
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 34444444444444444433 33344444444444443
No 148
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.60 E-value=1.1e-08 Score=99.95 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=57.1
Q ss_pred eeEEEEecCCCCCCCccc--cccccccceeecCCCceeeecCcccccc-chhhhcccccCeeeecccccccccccchhhh
Q 048733 599 LMKVLDLEDSPINYLPEG--VGNLFNLHLLNARNTKILDLAHTFVSEL-PEEIRNLKKLRSLIVFHYKYITGSIIPTEAA 675 (887)
Q Consensus 599 ~Lr~L~L~~~~l~~lp~~--i~~L~~L~~L~L~~~~~Ldl~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 675 (887)
.|++|+|++|.+..+|.. ++.+++|++|+|++| .+..+ |..+.++++|++|++++| .+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N--------~l~~~~~~~~~~l~~L~~L~Ls~N-----------~l 90 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN--------QLTGIEPNAFEGASHIQELQLGEN-----------KI 90 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS--------CCCCBCTTTTTTCTTCCEEECCSC-----------CC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCC--------CCCCcCHhHcCCcccCCEEECCCC-----------cC
Confidence 566777777777666543 667777776666654 35544 455667777777777766 23
Q ss_pred hhccC-CccccccccccccccccCceecchHHHHHhhccccccceeEEe
Q 048733 676 AKIHR-GFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRR 723 (887)
Q Consensus 676 ~~~p~-~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 723 (887)
..++. .++.+++|++|+ ++.+.+....+..+..+++|+.|++++
T Consensus 91 ~~~~~~~~~~l~~L~~L~----L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLN----LYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CEECSSSSTTCTTCCEEE----CCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CccCHHHhcCCCCCCEEE----CCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 33332 255555666555 444444433333344444444444443
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.56 E-value=1e-07 Score=93.14 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=83.7
Q ss_pred cccceeEEeec-cCCCChhhhcCCCcceeEEEecccCCcC---cCcCcccceeeeCcCCCceeEEE-cCCCccCccEEEE
Q 048733 765 QHLQYLSLRGN-MKKLPDWILKLKNLIGSRLILSGLTEDP---ISWFPKLRKLVLLNFEAVKSVII-EKGAMPDIRELWI 839 (887)
Q Consensus 765 ~~L~~L~L~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~~~-~~~~lp~L~~L~l 839 (887)
++|+.|+|++| +..+|..+..+++|+.|+|++|.+...+ +..+++|++|++.++. +..++. .+..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEEC
Confidence 48999999987 4788888999999999999999988765 4467889999999875 555544 4778999999999
Q ss_pred ccCCCCCcccc-ccccCCCCCEEEEEech
Q 048733 840 GPCPLLMEIPI-GIDHLRNLELLTFHDMS 867 (887)
Q Consensus 840 ~~c~~l~~lp~-~~~~l~~L~~L~l~~c~ 867 (887)
++|. ++.+|. .+..+++|+.|++++||
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 9997 666666 57889999999999987
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.55 E-value=1.7e-08 Score=99.29 Aligned_cols=124 Identities=16% Similarity=0.157 Sum_probs=75.6
Q ss_pred eEEEEecCC--CCCCCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeecccccccccccchhhhhh
Q 048733 600 MKVLDLEDS--PINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAK 677 (887)
Q Consensus 600 Lr~L~L~~~--~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 677 (887)
|+.+.+.++ .++.+|..++.+++|++|++++| .+..+| .+.++++|++|++++| ....
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n--------~l~~l~-~~~~l~~L~~L~l~~n-----------~l~~ 84 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN--------NIEKIS-SLSGMENLRILSLGRN-----------LIKK 84 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE--------EESCCC-CHHHHTTCCEEEEEEE-----------EECS
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCC--------CCcccc-ccccCCCCCEEECCCC-----------Cccc
Confidence 445555554 45567778889999998888765 467788 7888999999999987 3444
Q ss_pred ccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeec
Q 048733 678 IHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMK 749 (887)
Q Consensus 678 ~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 749 (887)
+|..++.+++|+.|+ ++.+.+... ..+..+++|+.|+++++....-.....+.++++|+.|++++|
T Consensus 85 l~~~~~~~~~L~~L~----L~~N~l~~l--~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 85 IENLDAVADTLEELW----ISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp CSSHHHHHHHCSEEE----EEEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred ccchhhcCCcCCEEE----CcCCcCCcC--CccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 555455556666665 445544331 245556666666665533322111234555555555555554
No 151
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.55 E-value=3.2e-08 Score=96.79 Aligned_cols=103 Identities=22% Similarity=0.271 Sum_probs=62.1
Q ss_pred ceeEEEEecCCCCCCCccccccccccceeecCCCceeeecCccccccch-hhhcccccCeeeecccccccccccchhhhh
Q 048733 598 KLMKVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPE-EIRNLKKLRSLIVFHYKYITGSIIPTEAAA 676 (887)
Q Consensus 598 ~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 676 (887)
+.|++|+|++|.++.+|..+..+++|++|+|++| .+..+|. .+.++++|++|++++| .+.
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N--------~i~~i~~~~f~~l~~L~~L~Ls~N-----------~l~ 91 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN--------RISTLSNQSFSNMTQLLTLILSYN-----------RLR 91 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS--------CCCCCCTTTTTTCTTCCEEECCSS-----------CCC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC--------cCCEeCHhHccCCCCCCEEECCCC-----------ccC
Confidence 4577777777777777777777777777776654 3555554 4667777777777776 333
Q ss_pred hccC-CccccccccccccccccCceecchHHHHHhhccccccceeEEe
Q 048733 677 KIHR-GFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRR 723 (887)
Q Consensus 677 ~~p~-~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 723 (887)
.+|. .++.+++|+.|. ++.+.+.......+..+++|+.|++.+
T Consensus 92 ~i~~~~f~~l~~L~~L~----L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLS----LHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp BCCTTTTTTCTTCCEEE----CCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred EeCHHHhCCCCCCCEEE----CCCCCCCeeChhhhhcCccccEEEeCC
Confidence 3333 356666666666 545544433333344555555555554
No 152
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.54 E-value=7.7e-07 Score=97.15 Aligned_cols=202 Identities=15% Similarity=0.138 Sum_probs=113.6
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
..++|++..++.+...+..+.. ...+.|+|++|+||||+|+.+++.......+. ...+........+ .
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~----~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRI-HHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREI----E 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCC-CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHH----H
T ss_pred hhccCcHHHHHHHHHHHHhCCC-CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHH----h
Confidence 3589999999999999876542 34678999999999999999987532111110 0001100111111 1
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH-hCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH-LKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIV 327 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 327 (887)
.... .+...... ...........+...+... ..+++.++|+||++.. +.++.+...+.....+..+|+
T Consensus 84 ~~~~--~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il 154 (373)
T 1jr3_A 84 QGRF--VDLIEIDA-------ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 (373)
T ss_dssp TSCC--SSCEEEET-------TCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEE
T ss_pred ccCC--CceEEecc-------cccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEE
Confidence 1000 00000000 0000011122222222111 1346789999999654 456777777765555677777
Q ss_pred Eccchh-HHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHh
Q 048733 328 TTRHMN-VAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVG 400 (887)
Q Consensus 328 TtR~~~-v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 400 (887)
+|.... +..... .....+.+.+++.++..+++.+.+-..+. .-..+....|++.++|.|..+..+.
T Consensus 155 ~~~~~~~l~~~l~--sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-----~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 155 ATTDPQKLPVTIL--SRCLQFHLKALDVEQIRHQLEHILNEEHI-----AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EESCGGGSCHHHH--TTSEEEECCCCCHHHHHHHHHHHHHHHTC-----CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred EeCChHhCcHHHH--hheeEeeCCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 776433 211111 12278999999999999999876532110 1124567789999999998776544
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.42 E-value=5.3e-07 Score=86.75 Aligned_cols=101 Identities=22% Similarity=0.337 Sum_probs=64.4
Q ss_pred CCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccc-cccccccceeecCCCceeeecCccccccchh-h
Q 048733 571 DSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEG-VGNLFNLHLLNARNTKILDLAHTFVSELPEE-I 648 (887)
Q Consensus 571 ~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~-i 648 (887)
.+++++|.+.++.. ..+.+..|.++++|++|+|++|.+..+|.. ++.+++|++|++++| .+..+|.. +
T Consensus 27 ~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N--------~l~~~~~~~~ 96 (177)
T 2o6r_A 27 PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN--------KLQSLPNGVF 96 (177)
T ss_dssp CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------CCCCCCTTTT
T ss_pred CCCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC--------CccccCHHHh
Confidence 35677777776654 234445567777777777777777766644 567777777777664 36666654 4
Q ss_pred hcccccCeeeecccccccccccchhhhhhccCC-ccccccccccc
Q 048733 649 RNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRG-FGSLRGLQSLR 692 (887)
Q Consensus 649 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~-i~~L~~L~~L~ 692 (887)
.++++|++|++++| ....+|.. +..+++|+.|+
T Consensus 97 ~~l~~L~~L~l~~N-----------~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 97 DKLTQLKELALDTN-----------QLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp TTCTTCCEEECCSS-----------CCSCCCTTTTTTCTTCCEEE
T ss_pred hCCcccCEEECcCC-----------cceEeCHHHhcCCcccCEEE
Confidence 57777777777776 33344443 34566666655
No 154
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.42 E-value=1.3e-06 Score=93.01 Aligned_cols=179 Identities=15% Similarity=0.136 Sum_probs=109.7
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCc-eeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFS-CRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
..++|++..++.+.+++..+. ...+.|+|++|+|||++|+.+++... ...+. ..+.++.+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~---------- 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGID---------- 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTT----------
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChH----------
Confidence 468999999999998887653 22388999999999999999987411 11111 12223332211100
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHH--h-CCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcE
Q 048733 250 HRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDH--L-KDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSR 324 (887)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 324 (887)
........+... + .+++-++|+|+++.. +..+.+...+.....+.+
T Consensus 84 -----------------------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~ 134 (319)
T 2chq_A 84 -----------------------------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCR 134 (319)
T ss_dssp -----------------------------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEE
T ss_pred -----------------------------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCe
Confidence 001111111111 1 256789999999754 345556666655556778
Q ss_pred EEEEccchh-HHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 048733 325 IIVTTRHMN-VAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVA 398 (887)
Q Consensus 325 iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 398 (887)
+|+||.... +..... .....+.+.+++.++..+++.+.+...+. .-..+....|++.++|.+-.+..
T Consensus 135 ~i~~~~~~~~l~~~l~--sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-----~i~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 135 FILSCNYVSRIIEPIQ--SRCAVFRFKPVPKEAMKKRLLEICEKEGV-----KITEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp EEEEESCGGGSCHHHH--TTCEEEECCCCCHHHHHHHHHHHHHTTCC-----CBCHHHHHHHHHTTTTCHHHHHH
T ss_pred EEEEeCChhhcchHHH--hhCeEEEecCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 888776543 111111 12268999999999999999887643221 11245677888999999875543
No 155
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.40 E-value=1.9e-07 Score=91.16 Aligned_cols=45 Identities=24% Similarity=0.440 Sum_probs=38.7
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++||+++++++.+.+.... ...+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999987643 446789999999999999999885
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.33 E-value=5.2e-07 Score=86.37 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=26.9
Q ss_pred ceeEEEEecCCCCCCC-ccccccccccceeecCCCceeeecCccccccchhh-hcccccCeeeeccc
Q 048733 598 KLMKVLDLEDSPINYL-PEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEI-RNLKKLRSLIVFHY 662 (887)
Q Consensus 598 ~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i-~~l~~L~~L~l~~~ 662 (887)
+.|++|+|++|.+..+ |..++++++|++|+|++| .+..+|..+ .++++|++|++++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N--------~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN--------KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC--------CCCccChhHhCCcchhhEEECCCC
Confidence 3445555555555544 334445555555544443 244444432 34555555555544
No 157
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.32 E-value=3.8e-06 Score=93.00 Aligned_cols=203 Identities=13% Similarity=0.125 Sum_probs=112.9
Q ss_pred ccc-cchhcH--HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCC--ceeEEEEeCCCCCHHHHHHHHH
Q 048733 172 EVV-GIESIK--DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF--SCRAWVTVGKEYNKNDLLRTII 246 (887)
Q Consensus 172 ~~v-Gr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~i~ 246 (887)
.|+ |..... ..+......... ...+.|+|++|+||||||+.+++. ....+ ..+++++. ..+..++.
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~ 176 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLV 176 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHH
Confidence 455 644433 333333333322 567889999999999999999984 32222 12344443 23444444
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh----HHHHHHHhcCC-CCC
Q 048733 247 KEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID----FWRDVEHALLD-NKK 321 (887)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~----~~~~l~~~l~~-~~~ 321 (887)
..+... . ...+...++.+.-+|+|||++... ..+.+...+.. ...
T Consensus 177 ~~~~~~--------------------------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~ 226 (440)
T 2z4s_A 177 DSMKEG--------------------------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDS 226 (440)
T ss_dssp HHHHTT--------------------------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHcc--------------------------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHC
Confidence 444321 1 112334444467899999996432 22333333321 234
Q ss_pred CcEEEEEccch---------hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCC
Q 048733 322 CSRIIVTTRHM---------NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGL 392 (887)
Q Consensus 322 gs~iivTtR~~---------~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 392 (887)
|..||+||.+. .+...+... ..+.+++++.++..+++.+.+..... ..+ .++...|++.++|.
T Consensus 227 ~~~iIitt~~~~~~l~~l~~~L~sR~~~g---~~i~l~~p~~e~r~~iL~~~~~~~~~--~i~---~e~l~~la~~~~gn 298 (440)
T 2z4s_A 227 GKQIVICSDREPQKLSEFQDRLVSRFQMG---LVAKLEPPDEETRKSIARKMLEIEHG--ELP---EEVLNFVAENVDDN 298 (440)
T ss_dssp TCEEEEEESSCGGGCSSCCHHHHHHHHSS---BCCBCCCCCHHHHHHHHHHHHHHHTC--CCC---TTHHHHHHHHCCSC
T ss_pred CCeEEEEECCCHHHHHHHHHHHHhhccCC---eEEEeCCCCHHHHHHHHHHHHHHcCC--CCC---HHHHHHHHHhcCCC
Confidence 66788888763 222223221 57899999999999999887642111 111 24566788899998
Q ss_pred chHHHHHhh------hhcCCCCCHHHHHHHHHHhc
Q 048733 393 PLAIVAVGG------LLSTKNRIVSEWKKLFDRLG 421 (887)
Q Consensus 393 PLai~~~~~------~l~~~~~~~~~w~~~~~~~~ 421 (887)
+-.+.-+.. ....+.-+.+.+..++....
T Consensus 299 ~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 299 LRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 864432211 11233345666766665543
No 158
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.32 E-value=2.1e-06 Score=89.62 Aligned_cols=176 Identities=13% Similarity=0.099 Sum_probs=98.6
Q ss_pred cCccccchhcHHHHHHHHhcC-----------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCH
Q 048733 170 DDEVVGIESIKDKLIDLMLNG-----------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNK 238 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (887)
-..++|.+..+++|.+.+... -.....+.|+|++|+|||+||+.+++. ....| +.+..+.-...
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~~ 90 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELVKK 90 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGCCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHHHh
Confidence 457899999999998876431 123456889999999999999999984 22222 22222111000
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh------------
Q 048733 239 NDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI------------ 306 (887)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------ 306 (887)
........+...+......++.+|+|||++..
T Consensus 91 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~ 134 (285)
T 3h4m_A 91 ------------------------------------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGD 134 (285)
T ss_dssp ------------------------------------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGG
T ss_pred ------------------------------------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCcc
Confidence 00001122223333333456789999999643
Q ss_pred -h---HHHHHHHhcC--CCCCCcEEEEEccchhHHhh--hccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHH
Q 048733 307 -D---FWRDVEHALL--DNKKCSRIIVTTRHMNVAKF--CKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSEL 378 (887)
Q Consensus 307 -~---~~~~l~~~l~--~~~~gs~iivTtR~~~v~~~--~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~ 378 (887)
+ ....+...+. ....+..||.||........ .....-...+.+++.+.++..+++...+...... ..
T Consensus 135 ~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~--- 209 (285)
T 3h4m_A 135 REVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA--ED--- 209 (285)
T ss_dssp GHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC--TT---
T ss_pred HHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC--Cc---
Confidence 1 1222222222 22345677778875432221 1100111478999999999999998876433211 11
Q ss_pred HHHHHHHHHHhCCC
Q 048733 379 KELSQDILAKCGGL 392 (887)
Q Consensus 379 ~~~~~~I~~~c~G~ 392 (887)
.....|++.+.|.
T Consensus 210 -~~~~~l~~~~~g~ 222 (285)
T 3h4m_A 210 -VNLEEIAKMTEGC 222 (285)
T ss_dssp -CCHHHHHHHCTTC
T ss_pred -CCHHHHHHHcCCC
Confidence 1235577777774
No 159
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.32 E-value=9.9e-07 Score=84.82 Aligned_cols=101 Identities=24% Similarity=0.279 Sum_probs=74.6
Q ss_pred cccceeEEeecc-CCCCh-hhhcCCCcceeEEEecccCCcCc---CcCcccceeeeCcCCCceeEEEc-CCCccCccEEE
Q 048733 765 QHLQYLSLRGNM-KKLPD-WILKLKNLIGSRLILSGLTEDPI---SWFPKLRKLVLLNFEAVKSVIIE-KGAMPDIRELW 838 (887)
Q Consensus 765 ~~L~~L~L~~~~-~~lp~-~~~~l~~L~~L~L~~~~l~~~~~---~~~~~L~~L~l~~~~~l~~~~~~-~~~lp~L~~L~ 838 (887)
++|+.|+++++. ..+|. .+..+++|++|+|++|.+...+. ..+++|+.|++.++. +..++.. ++.+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEE
Confidence 378888888763 44443 45778888888888888876543 467788888888764 4555443 46788999999
Q ss_pred EccCCCCCccccc-cccCCCCCEEEEEech
Q 048733 839 IGPCPLLMEIPIG-IDHLRNLELLTFHDMS 867 (887)
Q Consensus 839 l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~ 867 (887)
+++|. ++.+|.. +..+++|++|++++||
T Consensus 107 l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 107 LDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 98886 5666664 4778999999998887
No 160
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.32 E-value=2.6e-05 Score=83.50 Aligned_cols=174 Identities=17% Similarity=0.162 Sum_probs=103.3
Q ss_pred cCccccchhcHHHHHHHHhcC---CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNG---RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTII 246 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~ 246 (887)
-..++|++..++++..++... ......|.|+|++|+|||+||+.+++. ....| +.++.+....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~--------- 93 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEK--------- 93 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCS---------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccc---------
Confidence 357999999999998888752 233456889999999999999999874 33222 2222211111
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--hHHHHHHHhcCCCC----
Q 048733 247 KEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI--DFWRDVEHALLDNK---- 320 (887)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~---- 320 (887)
...+...+.. ..+.-+|+||+++.. +....+...+....
T Consensus 94 ---------------------------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~ 138 (338)
T 3pfi_A 94 ---------------------------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDII 138 (338)
T ss_dssp ---------------------------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---
T ss_pred ---------------------------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhh
Confidence 1111111111 235679999999754 33444444443221
Q ss_pred --------------CCcEEEEEccchhH-HhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHH
Q 048733 321 --------------KCSRIIVTTRHMNV-AKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDI 385 (887)
Q Consensus 321 --------------~gs~iivTtR~~~v-~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I 385 (887)
++..+|.||..... ....... -...+.+.+++.++..+++.+.+.... ..-..+....|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R-~~~~i~l~~~~~~e~~~il~~~~~~~~-----~~~~~~~~~~l 212 (338)
T 3pfi_A 139 IGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDR-FGMQFRLEFYKDSELALILQKAALKLN-----KTCEEKAALEI 212 (338)
T ss_dssp ------CCCCCCCCCCCEEEEEESCGGGSCHHHHTT-CSEEEECCCCCHHHHHHHHHHHHHHTT-----CEECHHHHHHH
T ss_pred cccCccccceecCCCCeEEEEeCCCccccCHHHHhh-cCEEeeCCCcCHHHHHHHHHHHHHhcC-----CCCCHHHHHHH
Confidence 12455555554321 1111110 116899999999999999988763321 11225667788
Q ss_pred HHHhCCCchHHHH
Q 048733 386 LAKCGGLPLAIVA 398 (887)
Q Consensus 386 ~~~c~G~PLai~~ 398 (887)
++.+.|+|-.+..
T Consensus 213 ~~~~~G~~r~l~~ 225 (338)
T 3pfi_A 213 AKRSRSTPRIALR 225 (338)
T ss_dssp HHTTTTCHHHHHH
T ss_pred HHHHCcCHHHHHH
Confidence 8899999854443
No 161
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.27 E-value=4.7e-07 Score=86.36 Aligned_cols=76 Identities=29% Similarity=0.395 Sum_probs=46.1
Q ss_pred ceeEEEEecCCCCCCC-ccccccccccceeecCCCceeeecCccccccchhh-hcccccCeeeecccccccccccchhhh
Q 048733 598 KLMKVLDLEDSPINYL-PEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEI-RNLKKLRSLIVFHYKYITGSIIPTEAA 675 (887)
Q Consensus 598 ~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~~~~~~~~ 675 (887)
+.|++|+|++|.++.+ |..+..+++|++|+|++| .+..+|..+ .++++|++|++++| .+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N--------~l~~l~~~~f~~l~~L~~L~L~~N-----------~l 90 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN--------QLTVLPAGVFDKLTQLTQLSLNDN-----------QL 90 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS--------CCCCCCTTTTTTCTTCCEEECCSS-----------CC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC--------CcCccChhhccCCCCCCEEECCCC-----------cc
Confidence 5566777777777665 445667777776666654 356666543 56777777777766 33
Q ss_pred hhccCC-ccccccccccc
Q 048733 676 AKIHRG-FGSLRGLQSLR 692 (887)
Q Consensus 676 ~~~p~~-i~~L~~L~~L~ 692 (887)
..+|.+ ++.+++|+.|.
T Consensus 91 ~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CCCCTTTTTTCTTCCEEE
T ss_pred CEeCHHHhcCCCCCCEEE
Confidence 344433 55555555555
No 162
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=3e-06 Score=90.53 Aligned_cols=217 Identities=13% Similarity=0.122 Sum_probs=118.4
Q ss_pred CceeEEEEecCCCCCCCcc-ccccccccceeecCCCceeeecCccccccchh-hhcccccCeeeecccccccccccchhh
Q 048733 597 FKLMKVLDLEDSPINYLPE-GVGNLFNLHLLNARNTKILDLAHTFVSELPEE-IRNLKKLRSLIVFHYKYITGSIIPTEA 674 (887)
Q Consensus 597 ~~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~ 674 (887)
|++|+.|+|.+ .+..+++ .+.++.+|+.|++..|. +..++.. +..+.++..+......... .
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~--------i~~i~~~aF~~~~~l~~l~~~~~~~~~-------~ 163 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT--------APNLLPEALADSVTAIFIPLGSSDAYR-------F 163 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS--------CCEECTTSSCTTTCEEEECTTCTHHHH-------T
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC--------ccccchhhhcCCCceEEecCcchhhhh-------c
Confidence 77777777777 6666653 46677777777776653 3333332 2344444444443310000 0
Q ss_pred hhhcc-CCccccccccc-cccccccCceec-chHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCC
Q 048733 675 AAKIH-RGFGSLRGLQS-LRGLLALPTIEA-DSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSK 751 (887)
Q Consensus 675 ~~~~p-~~i~~L~~L~~-L~~~~~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 751 (887)
...+. ..+..+.+|+. +. +..... ............++..+.+.+. ............+++|+.|++..|..
T Consensus 164 ~~~i~~~~f~~~~~L~~~i~----~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i 238 (329)
T 3sb4_A 164 KNRWEHFAFIEGEPLETTIQ----VGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNA 238 (329)
T ss_dssp STTTTTSCEEESCCCEEEEE----ECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCC
T ss_pred cccccccccccccccceeEE----ecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCc
Confidence 00111 11333444441 11 001100 1111111124566777777642 23333333334588999999997754
Q ss_pred ccccccCcccccccccceeEEeeccCCCCh-hhhcCCCcc-eeEEEecccC---CcCcCcCcccceeeeCcCCCceeEEE
Q 048733 752 EEILDLQSLSSPPQHLQYLSLRGNMKKLPD-WILKLKNLI-GSRLILSGLT---EDPISWFPKLRKLVLLNFEAVKSVII 826 (887)
Q Consensus 752 ~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~-~~~~l~~L~-~L~L~~~~l~---~~~~~~~~~L~~L~l~~~~~l~~~~~ 826 (887)
..... ..+..+. +|+.|+|.++...++. .|.+|++|+ .|.|.+ .+. ...+.++++|+.|.+.+. .+..++.
T Consensus 239 ~~I~~-~aF~~~~-~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~ 314 (329)
T 3sb4_A 239 TTIPD-FTFAQKK-YLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD-KITTLGD 314 (329)
T ss_dssp CEECT-TTTTTCT-TCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS-CCCEECT
T ss_pred ceecH-hhhhCCC-CCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC-ccCccch
Confidence 43322 3344444 9999999988765554 567899999 999987 443 345567788888887654 3566644
Q ss_pred -cCCCccCccEEE
Q 048733 827 -EKGAMPDIRELW 838 (887)
Q Consensus 827 -~~~~lp~L~~L~ 838 (887)
.+..+++|+.|.
T Consensus 315 ~aF~~~~~L~~ly 327 (329)
T 3sb4_A 315 ELFGNGVPSKLIY 327 (329)
T ss_dssp TTTCTTCCCCEEE
T ss_pred hhhcCCcchhhhc
Confidence 466788888875
No 163
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.27 E-value=1.7e-06 Score=87.88 Aligned_cols=171 Identities=12% Similarity=0.067 Sum_probs=96.1
Q ss_pred Cccccch---hcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHH
Q 048733 171 DEVVGIE---SIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (887)
Q Consensus 171 ~~~vGr~---~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (887)
+.|+|.+ ..++.+..+.... ....+.|+|++|+||||||+.+++. .......+.|+..+.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~--------- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI--------- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS---------
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH---------
Confidence 3566633 4455555555543 3457889999999999999999884 2222234556654321000
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh--H--HHHHHHhcCC--CCC
Q 048733 248 EFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID--F--WRDVEHALLD--NKK 321 (887)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~--~~~l~~~l~~--~~~ 321 (887)
+ .+.. +.+ .++-+||+||++... . .+.+...+.. ...
T Consensus 95 -~----------------------~~~~-------------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~ 137 (242)
T 3bos_A 95 -S----------------------TALL-------------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQK 137 (242)
T ss_dssp -C----------------------GGGG-------------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHC
T ss_pred -H----------------------HHHH-------------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcC
Confidence 0 0000 001 346799999996542 2 2333333221 111
Q ss_pred CcEEEEEccchh---------HHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCC
Q 048733 322 CSRIIVTTRHMN---------VAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGL 392 (887)
Q Consensus 322 gs~iivTtR~~~---------v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 392 (887)
..++|+||+... +...+... ..+.+++++.++..+++...+..... .-..++...|++.++|.
T Consensus 138 ~~~ii~~~~~~~~~~~~~~~~l~~r~~~~---~~i~l~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~l~~~~~g~ 209 (242)
T 3bos_A 138 RGSLIVSASASPMEAGFVLPDLVSRMHWG---LTYQLQPMMDDEKLAALQRRAAMRGL-----QLPEDVGRFLLNRMARD 209 (242)
T ss_dssp SCEEEEEESSCTTTTTCCCHHHHHHHHHS---EEEECCCCCGGGHHHHHHHHHHHTTC-----CCCHHHHHHHHHHTTTC
T ss_pred CCeEEEEcCCCHHHHHHhhhhhhhHhhcC---ceEEeCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHccCC
Confidence 224777776422 11111111 57899999999999999887642211 11246677888999998
Q ss_pred chHHHHH
Q 048733 393 PLAIVAV 399 (887)
Q Consensus 393 PLai~~~ 399 (887)
+-.+..+
T Consensus 210 ~r~l~~~ 216 (242)
T 3bos_A 210 LRTLFDV 216 (242)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7655543
No 164
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.26 E-value=5.8e-07 Score=86.04 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=76.2
Q ss_pred EEEEecCCCCCCCccccccccccceeecCCCceeeecCcccccc-chhhhcccccCeeeecccccccccccchhhhhhcc
Q 048733 601 KVLDLEDSPINYLPEGVGNLFNLHLLNARNTKILDLAHTFVSEL-PEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIH 679 (887)
Q Consensus 601 r~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p 679 (887)
+.++++++.+..+|..+. .+|++|+|++| .+..+ |..+.++++|++|++++| .+..+|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N--------~l~~~~~~~~~~l~~L~~L~Ls~N-----------~l~~i~ 73 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNN--------QITKLEPGVFDHLVNLQQLYFNSN-----------KLTAIP 73 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSS--------CCCCCCTTTTTTCTTCCEEECCSS-----------CCCCCC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCC--------CccccCHHHhcCCcCCCEEECCCC-----------CCCccC
Confidence 689999999999998775 78888888765 57777 557889999999999998 456677
Q ss_pred CC-ccccccccccccccccCceecchHHHHHhhccccccceeEEecc
Q 048733 680 RG-FGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQN 725 (887)
Q Consensus 680 ~~-i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 725 (887)
.+ ++++++|++|+ ++.+.+.......+..+++|+.|++++|.
T Consensus 74 ~~~~~~l~~L~~L~----L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 74 TGVFDKLTQLTQLD----LNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTTTTCTTCCEEE----CCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred hhHhCCcchhhEEE----CCCCccceeCHHHhccccCCCEEEeCCCC
Confidence 65 57888888888 66666654444446677777777777643
No 165
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.25 E-value=4.5e-07 Score=97.42 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=33.1
Q ss_pred ccchhhhcccccCeeeecccccccccccchhhhhhccCCccccccccccccccccCceecchHHHHHhh--cccccccee
Q 048733 643 ELPEEIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELM--MLRQLNMLS 720 (887)
Q Consensus 643 ~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~--~l~~L~~L~ 720 (887)
.++..+..+++|+.|++++|. ...++. + .+++|++|. +....+.......+. .+++|+.|+
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~-----------~l~l~~-~-~~~~L~~L~----L~~~~l~~~~l~~l~~~~lp~L~~L~ 225 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTN-----------NLSIGK-K-PRPNLKSLE----IISGGLPDSVVEDILGSDLPNLEKLV 225 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCB-----------TCBCCS-C-BCTTCSEEE----EECSBCCHHHHHHHHHSBCTTCCEEE
T ss_pred CHHHHHhcCCCCcEEEEeCCC-----------Cceecc-c-cCCCCcEEE----EecCCCChHHHHHHHHccCCCCcEEE
Confidence 455556677788888887651 112222 2 245555555 323333344444443 566666666
Q ss_pred EE
Q 048733 721 IR 722 (887)
Q Consensus 721 l~ 722 (887)
++
T Consensus 226 L~ 227 (362)
T 2ra8_A 226 LY 227 (362)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 166
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.24 E-value=6.2e-06 Score=90.27 Aligned_cols=238 Identities=11% Similarity=0.059 Sum_probs=117.7
Q ss_pred cccCCCceeEEEEecCCCCCCCccc-cccccccceeecCCCceeeecCccccccch-hhhcccccCeeeecccccccccc
Q 048733 592 SCIANFKLMKVLDLEDSPINYLPEG-VGNLFNLHLLNARNTKILDLAHTFVSELPE-EIRNLKKLRSLIVFHYKYITGSI 669 (887)
Q Consensus 592 ~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~ 669 (887)
..|.++ .|+.+.|..+ +..++.. +.+ .+|+.+.+.. .+..++. .+.++++|+.+++..+
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~---------~l~~I~~~aF~~c~~L~~l~l~~n------- 190 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS---------TLEQLKEDIFYYCYNLKKADLSKT------- 190 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT---------TCCEECSSTTTTCTTCCEEECTTS-------
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC---------CccEehHHHhhCcccCCeeecCCC-------
Confidence 344443 4556665544 4444322 223 2455555543 2344432 3345566666666544
Q ss_pred cchhhhhhccCCccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhHHHHHHhcccCCcEEEEeec
Q 048733 670 IPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMK 749 (887)
Q Consensus 670 ~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 749 (887)
....+|.+...+++|+.+. ++.. +..-....+.++++|+.+.+..+-.... ...+.+ .+|+.+.+..+
T Consensus 191 ----~l~~I~~~aF~~~~L~~l~----lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~--~~aF~~-~~L~~i~lp~~ 258 (401)
T 4fdw_A 191 ----KITKLPASTFVYAGIEEVL----LPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIG--QEAFRE-SGITTVKLPNG 258 (401)
T ss_dssp ----CCSEECTTTTTTCCCSEEE----CCTT-CCEECTTTTTTCTTCCCEECCTTCCEEC--TTTTTT-CCCSEEEEETT
T ss_pred ----cceEechhhEeecccCEEE----eCCc-hheehhhHhhCCCCCCEEecCCCccCcc--cccccc-CCccEEEeCCC
Confidence 2334444333344555444 2211 1111222345555666555543100000 012223 56777777432
Q ss_pred CCccccccCcccccccccceeEEeeccCC------CC-hhhhcCCCcceeEEEecccC---CcCcCcCcccceeeeCcCC
Q 048733 750 SKEEILDLQSLSSPPQHLQYLSLRGNMKK------LP-DWILKLKNLIGSRLILSGLT---EDPISWFPKLRKLVLLNFE 819 (887)
Q Consensus 750 ~~~~~~~l~~l~~~~~~L~~L~L~~~~~~------lp-~~~~~l~~L~~L~L~~~~l~---~~~~~~~~~L~~L~l~~~~ 819 (887)
... +.-..+..+. +|+.+.+.++... ++ ..|..|++|+.+.|..+ +. ...+.++++|+.|.+..
T Consensus 259 -i~~-I~~~aF~~c~-~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~-- 332 (401)
T 4fdw_A 259 -VTN-IASRAFYYCP-ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPA-- 332 (401)
T ss_dssp -CCE-ECTTTTTTCT-TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECT--
T ss_pred -ccE-EChhHhhCCC-CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECc--
Confidence 211 1112333333 7888887765421 33 34566788888888743 33 33444667778877754
Q ss_pred CceeEEE-cCCCccCccEEEEccCCCCCccccccccCC-CCCEEEEEech
Q 048733 820 AVKSVII-EKGAMPDIRELWIGPCPLLMEIPIGIDHLR-NLELLTFHDMS 867 (887)
Q Consensus 820 ~l~~~~~-~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~c~ 867 (887)
+++.+.. .+..+ +|+.|.+.+|......+..+..++ +++.|.+-...
T Consensus 333 ~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 333 NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 3555532 24556 888898888763333334556664 67788776544
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=7.6e-06 Score=88.38 Aligned_cols=193 Identities=13% Similarity=0.076 Sum_probs=111.2
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCc-eeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFS-CRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
..++|++..++.+..++..+.. ..+.|+|++|+||||+|+.+++.......+. ..+.+..+..... ..+.+.+..+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 113 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI-SIVREKVKNF 113 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH-HHHTTHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch-HHHHHHHHHH
Confidence 4689999999999999877542 2388999999999999999988421110111 1223333332222 2233333332
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEE
Q 048733 250 HRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIV 327 (887)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 327 (887)
..... . ..... .....-.+++-+|++|+++.. .....+...+.......++|+
T Consensus 114 ~~~~~-----------------~---~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il 168 (353)
T 1sxj_D 114 ARLTV-----------------S---KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCL 168 (353)
T ss_dssp HHSCC-----------------C---CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEE
T ss_pred hhhcc-----------------c---ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEE
Confidence 22100 0 00000 000111234569999999654 345556665554445567777
Q ss_pred Eccchh-HHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 048733 328 TTRHMN-VAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVA 398 (887)
Q Consensus 328 TtR~~~-v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 398 (887)
+|.... +...... ....+.+.+++.++..+.+.+.+..... . -..+..+.|++.++|.|-.+..
T Consensus 169 ~~~~~~~l~~~l~s--R~~~i~~~~~~~~~~~~~l~~~~~~~~~--~---i~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 169 ICNYVTRIIDPLAS--QCSKFRFKALDASNAIDRLRFISEQENV--K---CDDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp EESCGGGSCHHHHH--HSEEEECCCCCHHHHHHHHHHHHHTTTC--C---CCHHHHHHHHHHTSSCHHHHHH
T ss_pred EeCchhhCcchhhc--cCceEEeCCCCHHHHHHHHHHHHHHhCC--C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 665432 2111111 1157899999999999999887643221 1 1246778899999999876443
No 168
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.23 E-value=2e-05 Score=81.08 Aligned_cols=179 Identities=11% Similarity=0.096 Sum_probs=96.8
Q ss_pred CccccchhcHHHHHHHHh---cCC-------CCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHH
Q 048733 171 DEVVGIESIKDKLIDLML---NGR-------SKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKND 240 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (887)
..++|.+..++++.+++. ... ...+.+.|+|++|+|||++|+.+++. .... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh--
Confidence 468999988887766543 211 23456789999999999999999984 2222 233333321110
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--------------
Q 048733 241 LLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI-------------- 306 (887)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-------------- 306 (887)
........+...+.......+.+|+||+++..
T Consensus 79 ----------------------------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~ 124 (262)
T 2qz4_A 79 ----------------------------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNT 124 (262)
T ss_dssp ----------------------------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-----------------
T ss_pred ----------------------------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccch
Confidence 00001122233333333456789999999754
Q ss_pred ---hHHHHHHHhcCC--CCCCcEEEEEccchhHHh-h-hccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHH
Q 048733 307 ---DFWRDVEHALLD--NKKCSRIIVTTRHMNVAK-F-CKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELK 379 (887)
Q Consensus 307 ---~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~ 379 (887)
.....+...+.. ...+..||.||....... . .....-...+.+++.+.++-.+++...+..... .....
T Consensus 125 ~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----~~~~~ 200 (262)
T 2qz4_A 125 EEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL----TQSST 200 (262)
T ss_dssp --CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC----CBTHH
T ss_pred hHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC----Ccchh
Confidence 112233333322 223456666665543211 1 110011257789999999999998877643221 11122
Q ss_pred HHHHHHHHHhCCCch
Q 048733 380 ELSQDILAKCGGLPL 394 (887)
Q Consensus 380 ~~~~~I~~~c~G~PL 394 (887)
.....+++.+.|.+-
T Consensus 201 ~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 201 FYSQRLAELTPGFSG 215 (262)
T ss_dssp HHHHHHHHTCTTCCH
T ss_pred hHHHHHHHHCCCCCH
Confidence 234678888888754
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.21 E-value=8.7e-06 Score=89.94 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=102.0
Q ss_pred CccccchhcH---HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHH
Q 048733 171 DEVVGIESIK---DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (887)
Q Consensus 171 ~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (887)
..++|.+..+ ..+...+..+. ...+.|+|++|+||||||+.+++. ....| +.++....-..-++.++.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~ir~~~~ 96 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKEIREAIE 96 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHHHHHHHH
Confidence 4688988888 67777777654 467889999999999999999984 32222 222221111111222221
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh--HHHHHHHhcCCCCCCcEE
Q 048733 248 EFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID--FWRDVEHALLDNKKCSRI 325 (887)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~i 325 (887)
... .....+++.+|+||+++... ..+.+...+..+ ...+
T Consensus 97 ~a~-------------------------------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~l 137 (447)
T 3pvs_A 97 RAR-------------------------------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITF 137 (447)
T ss_dssp HHH-------------------------------------HHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEE
T ss_pred HHH-------------------------------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEE
Confidence 111 11124678899999997653 444455555442 2334
Q ss_pred EE-EccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCC-C-CCChHHHHHHHHHHHHhCCCchHHH
Q 048733 326 IV-TTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSG-G-CCPSELKELSQDILAKCGGLPLAIV 397 (887)
Q Consensus 326 iv-TtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~-~-~~~~~~~~~~~~I~~~c~G~PLai~ 397 (887)
|. ||.+....-.-...+....+.+.+++.++..+++.+.+-..... . ....-..+....|++.++|.+-.+.
T Consensus 138 I~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 138 IGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp EEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred EecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 43 55554211000011223688999999999999998876431110 0 1111235667788888998876444
No 170
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.20 E-value=2.7e-05 Score=80.48 Aligned_cols=171 Identities=15% Similarity=0.144 Sum_probs=92.8
Q ss_pred ccccchhcHHHHHH-------HHhcC-CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHH
Q 048733 172 EVVGIESIKDKLID-------LMLNG-RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLR 243 (887)
Q Consensus 172 ~~vGr~~~~~~l~~-------~L~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 243 (887)
.++|....++++.. .+... ......+.|+|++|+|||+||+.+++. ....| +.+..+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~~------- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDKM------- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGGC-------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHHh-------
Confidence 46777777666655 33322 334678899999999999999999984 22222 222221100
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh-----------hHH-HH
Q 048733 244 TIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI-----------DFW-RD 311 (887)
Q Consensus 244 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~~~-~~ 311 (887)
.+ .. .......+...+......+..+|+|||++.. ..+ +.
T Consensus 102 ------~g-------------------~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~ 153 (272)
T 1d2n_A 102 ------IG-------------------FS---ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQA 153 (272)
T ss_dssp ------TT-------------------CC---HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHH
T ss_pred ------cC-------------------Cc---hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHH
Confidence 00 00 0000122233333444567889999998643 122 22
Q ss_pred HHHhcCC---CCCCcEEEEEccchhHHhhhccCCC-cceeecCCCCh-hhHHHHHHHhhcCCCCCCCCChHHHHHHHHHH
Q 048733 312 VEHALLD---NKKCSRIIVTTRHMNVAKFCKLSSS-VRIHELETLPP-DEAWKLFCRKAFGPSSGGCCPSELKELSQDIL 386 (887)
Q Consensus 312 l~~~l~~---~~~gs~iivTtR~~~v~~~~~~~~~-~~~~~l~~L~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~ 386 (887)
+...+.. .+....||.||.............. ...+.+++++. ++...++.+.. ... .+....|+
T Consensus 154 L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-------~~~---~~~~~~l~ 223 (272)
T 1d2n_A 154 LLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-------NFK---DKERTTIA 223 (272)
T ss_dssp HHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-------CSC---HHHHHHHH
T ss_pred HHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-------CCC---HHHHHHHH
Confidence 3333322 2233456667776644332111111 26789999988 66666666532 111 45567788
Q ss_pred HHhCCC
Q 048733 387 AKCGGL 392 (887)
Q Consensus 387 ~~c~G~ 392 (887)
+.+.|.
T Consensus 224 ~~~~g~ 229 (272)
T 1d2n_A 224 QQVKGK 229 (272)
T ss_dssp HHHTTS
T ss_pred HHhcCC
Confidence 888884
No 171
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.18 E-value=2.5e-06 Score=81.20 Aligned_cols=99 Identities=16% Similarity=0.307 Sum_probs=76.9
Q ss_pred eEEEEecCCCccccccCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCccc-cccccccceeecCCC
Q 048733 553 RRITIQRSIDDGALESIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEG-VGNLFNLHLLNARNT 631 (887)
Q Consensus 553 r~lsi~~~~~~~~~~~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~ 631 (887)
+.+.+.++.....+... .++++.|.+.++.. ..+.+..|.++++|++|+|++|.++.+|.. +..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 34555544333222222 47899999998876 345567789999999999999999988865 589999999998876
Q ss_pred ceeeecCccccccchh-hhcccccCeeeeccc
Q 048733 632 KILDLAHTFVSELPEE-IRNLKKLRSLIVFHY 662 (887)
Q Consensus 632 ~~Ldl~~~~l~~lp~~-i~~l~~L~~L~l~~~ 662 (887)
.+..+|.. +.++++|++|++++|
T Consensus 89 --------~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 89 --------QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp --------CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred --------ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 48888875 779999999999997
No 172
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.18 E-value=1.1e-05 Score=85.17 Aligned_cols=158 Identities=14% Similarity=0.154 Sum_probs=89.5
Q ss_pred ccccchhcHHHHHHHHhcC-------------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCH
Q 048733 172 EVVGIESIKDKLIDLMLNG-------------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNK 238 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (887)
.++|.+..++.|.+++... ......+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 5789998888887765421 233456889999999999999988774221111111123333210
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCC-----------hh
Q 048733 239 NDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWK-----------ID 307 (887)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-----------~~ 307 (887)
.+.. .........+...+... +.-+|+||+++. .+
T Consensus 109 ---------~l~~----------------------~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~ 154 (309)
T 3syl_A 109 ---------DLVG----------------------QYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQE 154 (309)
T ss_dssp ---------GTCC----------------------SSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHH
T ss_pred ---------Hhhh----------------------hcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHH
Confidence 0000 00000112222223222 346999999973 34
Q ss_pred HHHHHHHhcCCCCCCcEEEEEccchhHHhhhcc----CCC-cceeecCCCChhhHHHHHHHhhc
Q 048733 308 FWRDVEHALLDNKKCSRIIVTTRHMNVAKFCKL----SSS-VRIHELETLPPDEAWKLFCRKAF 366 (887)
Q Consensus 308 ~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~----~~~-~~~~~l~~L~~~e~~~lf~~~~~ 366 (887)
....+...+.....+..||.||........... ... ...+.+++++.++..+++...+.
T Consensus 155 ~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 155 AIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 455666666555556778888765332111000 001 16889999999999999887763
No 173
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.15 E-value=8.5e-05 Score=78.55 Aligned_cols=185 Identities=12% Similarity=0.080 Sum_probs=101.9
Q ss_pred cCccccchhcHHHHHHHHhc----------CCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHH
Q 048733 170 DDEVVGIESIKDKLIDLMLN----------GRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKN 239 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (887)
-++++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+.+++... ... .+.++.+.-.+
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~~-- 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLVS-- 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSCC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHHh--
Confidence 35789999999888877632 122346788999999999999999998420 111 12233221110
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh---------hH--
Q 048733 240 DLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI---------DF-- 308 (887)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---------~~-- 308 (887)
.........+...+...-..++.+|+||+++.. +.
T Consensus 85 ----------------------------------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 130 (322)
T 1xwi_A 85 ----------------------------------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR 130 (322)
T ss_dssp ----------------------------------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHH
T ss_pred ----------------------------------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHH
Confidence 000111222333333333457889999999754 11
Q ss_pred --HHHHHHhcCC---CCCCcEEEEEccchhHH-hhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHH
Q 048733 309 --WRDVEHALLD---NKKCSRIIVTTRHMNVA-KFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELS 382 (887)
Q Consensus 309 --~~~l~~~l~~---~~~gs~iivTtR~~~v~-~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~ 382 (887)
...+...+.. ...+..||.||...... ..... .-...+.++..+.++-.+++...+..... .. .....
T Consensus 131 ~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l---~~~~l 204 (322)
T 1xwi_A 131 RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR-RFEKRIYIPLPEPHARAAMFKLHLGTTQN--SL---TEADF 204 (322)
T ss_dssp HHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH-TCCEEEECCCCCHHHHHHHHHHHHTTCCB--CC---CHHHH
T ss_pred HHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh-hcCeEEEeCCcCHHHHHHHHHHHHhcCCC--CC---CHHHH
Confidence 1222222222 23344555566543211 11100 11157788888999888998887633211 11 13556
Q ss_pred HHHHHHhCCCch-HHHHHh
Q 048733 383 QDILAKCGGLPL-AIVAVG 400 (887)
Q Consensus 383 ~~I~~~c~G~PL-ai~~~~ 400 (887)
..|++.+.|..- .|..+.
T Consensus 205 ~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 205 RELGRKTDGYSGADISIIV 223 (322)
T ss_dssp HHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHH
Confidence 788999988743 344443
No 174
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.15 E-value=1.5e-05 Score=87.17 Aligned_cols=234 Identities=10% Similarity=0.081 Sum_probs=141.7
Q ss_pred ceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCc-cccccccccceeecCCCceeeecCccccccchhhhcc
Q 048733 573 KVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLP-EGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNL 651 (887)
Q Consensus 573 ~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l 651 (887)
+|+++.+...- ..+....|.++ .|+.+.|.+ .+..++ ..+.++.+|+.+++..| .+..+|......
T Consensus 136 ~L~~i~l~~~i---~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n--------~l~~I~~~aF~~ 202 (401)
T 4fdw_A 136 QIAKVVLNEGL---KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT--------KITKLPASTFVY 202 (401)
T ss_dssp CCSEEECCTTC---CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS--------CCSEECTTTTTT
T ss_pred CccEEEeCCCc---cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC--------cceEechhhEee
Confidence 67777765442 23444566665 588888876 566664 45778888888887754 477777777667
Q ss_pred cccCeeeecccccccccccchhhhhhccC-CccccccccccccccccCceecchHHHHHhhccccccceeEEeccCChhH
Q 048733 652 KKLRSLIVFHYKYITGSIIPTEAAAKIHR-GFGSLRGLQSLRGLLALPTIEADSQVLKELMMLRQLNMLSIRRQNGNGRD 730 (887)
Q Consensus 652 ~~L~~L~l~~~~~~~~~~~~~~~~~~~p~-~i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 730 (887)
.+|+.+.+..+ ...++. .+.++++|+.+. ++.+ +..-....+.+ .+|+.+.+..+-...
T Consensus 203 ~~L~~l~lp~~------------l~~I~~~aF~~~~~L~~l~----l~~~-l~~I~~~aF~~-~~L~~i~lp~~i~~I-- 262 (401)
T 4fdw_A 203 AGIEEVLLPVT------------LKEIGSQAFLKTSQLKTIE----IPEN-VSTIGQEAFRE-SGITTVKLPNGVTNI-- 262 (401)
T ss_dssp CCCSEEECCTT------------CCEECTTTTTTCTTCCCEE----CCTT-CCEECTTTTTT-CCCSEEEEETTCCEE--
T ss_pred cccCEEEeCCc------------hheehhhHhhCCCCCCEEe----cCCC-ccCcccccccc-CCccEEEeCCCccEE--
Confidence 88888888753 334443 366777788777 3322 11111222333 578888776421111
Q ss_pred HHHHHhcccCCcEEEEeecCCc----cccccCcccccccccceeEEeeccCCCC-hhhhcCCCcceeEEEecc--cCCcC
Q 048733 731 LCALIANLENVETLGVLMKSKE----EILDLQSLSSPPQHLQYLSLRGNMKKLP-DWILKLKNLIGSRLILSG--LTEDP 803 (887)
Q Consensus 731 l~~~l~~~~~L~~L~l~~~~~~----~~~~l~~l~~~~~~L~~L~L~~~~~~lp-~~~~~l~~L~~L~L~~~~--l~~~~ 803 (887)
-...+.++++|+.+.+..+... ..+.-..+..++ +|+.+.|..+...++ ..|.+|.+|+.+.|..+- +....
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~-~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~a 341 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP-KLARFEIPESIRILGQGLLGGNRKVTQLTIPANVTQINFSA 341 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT-TCCEECCCTTCCEECTTTTTTCCSCCEEEECTTCCEECTTS
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc-cCCeEEeCCceEEEhhhhhcCCCCccEEEECccccEEcHHh
Confidence 1245677889999998865432 011212333344 899999986665544 346678999999996541 33344
Q ss_pred cCcCcccceeeeCcCCCceeEE-EcCCCcc-CccEEEEccC
Q 048733 804 ISWFPKLRKLVLLNFEAVKSVI-IEKGAMP-DIRELWIGPC 842 (887)
Q Consensus 804 ~~~~~~L~~L~l~~~~~l~~~~-~~~~~lp-~L~~L~l~~c 842 (887)
+..+ +|+.|.+.++. ...++ ..+..+| +++.|.+-.+
T Consensus 342 F~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp SSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCHH
Confidence 5566 88888888763 22222 2233453 6777777543
No 175
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.15 E-value=2.4e-05 Score=83.28 Aligned_cols=176 Identities=14% Similarity=0.152 Sum_probs=102.6
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
++++|.+..++.+.+++..+. ...++.+.|++|+|||++|+.+++. .. ...+.++.+. .. .+.+++++..+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~-~~-~~~i~~~~~~~~ 97 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSD-CK-IDFVRGPLTNFA 97 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTT-CC-HHHHHTHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccc-cC-HHHHHHHHHHHH
Confidence 578999999999999998654 2356778889999999999999884 22 1233444333 22 222233232221
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh---HHHHHHHhcCCCCCCcEEEE
Q 048733 251 RLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID---FWRDVEHALLDNKKCSRIIV 327 (887)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~iiv 327 (887)
.... ..+++-+||+||++... ..+.+...+.....+.++|+
T Consensus 98 ~~~~------------------------------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~ 141 (324)
T 3u61_B 98 SAAS------------------------------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIII 141 (324)
T ss_dssp HBCC------------------------------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEE
T ss_pred hhcc------------------------------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEE
Confidence 1100 12367899999998654 44555555543334567888
Q ss_pred EccchhH-HhhhccCCCcceeecCCCChhhHHHH-------HHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHH
Q 048733 328 TTRHMNV-AKFCKLSSSVRIHELETLPPDEAWKL-------FCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAI 396 (887)
Q Consensus 328 TtR~~~v-~~~~~~~~~~~~~~l~~L~~~e~~~l-------f~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 396 (887)
||....- ...... ....+.+++++.++-.++ +.+.+..... ...+ .+....|++.++|.+-.+
T Consensus 142 ~~n~~~~l~~~l~s--R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~--~~~~--~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 142 TANNIDGIIKPLQS--RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI--AIAD--MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp EESSGGGSCTTHHH--HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC--CBSC--HHHHHHHHHHTCSCTTHH
T ss_pred EeCCccccCHHHHh--hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC--CCCc--HHHHHHHHHhCCCCHHHH
Confidence 7765431 111111 125789999998874333 2222211110 0111 266777888888877643
No 176
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.15 E-value=2.9e-05 Score=84.31 Aligned_cols=209 Identities=11% Similarity=0.149 Sum_probs=108.4
Q ss_pred cCccccchhcHHH---HHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEe----CCCCCHHHHH
Q 048733 170 DDEVVGIESIKDK---LIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV----GKEYNKNDLL 242 (887)
Q Consensus 170 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v----~~~~~~~~~~ 242 (887)
-+.++|++..++. +.+.+..+....+.+.|+|++|+|||++|+.+++.......| +.+.. +......+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 3579999988776 455555554444688899999999999999999853211122 12221 2233444444
Q ss_pred HHHHHHHhhccCCCC-------------CCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-----CCC----ceEEEE
Q 048733 243 RTIIKEFHRLSKHGR-------------DGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-----KDK----SYMVVL 300 (887)
Q Consensus 243 ~~i~~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~k----r~LlVl 300 (887)
.+......+...... ...+....+...+ . .......+...+.... .++ +.+|+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~---~-~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSG---D-TGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-----------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccC---c-ccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 444443211100000 0000000000000 0 0000122222222221 233 459999
Q ss_pred eccCCh--hHHHHHHHhcCCCCCCcEEEEEccc-----------------hhHHhhhccCCCcceeecCCCChhhHHHHH
Q 048733 301 DDVWKI--DFWRDVEHALLDNKKCSRIIVTTRH-----------------MNVAKFCKLSSSVRIHELETLPPDEAWKLF 361 (887)
Q Consensus 301 Ddv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-----------------~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf 361 (887)
|+++.. +....+...+...... .++++|.. +.+.. ....+.+++++.++..+++
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s------R~~~i~~~~~~~~e~~~il 268 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD------RLLIVSTTPYSEKDTKQIL 268 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT------TEEEEEECCCCHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh------hccEEEecCCCHHHHHHHH
Confidence 999765 4555566666544433 34444431 12222 2256899999999999999
Q ss_pred HHhhcCCCCCCCCChHHHHHHHHHHHHhC-CCchHHH
Q 048733 362 CRKAFGPSSGGCCPSELKELSQDILAKCG-GLPLAIV 397 (887)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~I~~~c~-G~PLai~ 397 (887)
.+.+-... ..-..+....|++.+. |.|-.+.
T Consensus 269 ~~~~~~~~-----~~~~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 269 RIRCEEED-----VEMSEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHHHTT-----CCBCHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHcC-----CCCCHHHHHHHHHHhcCCCHHHHH
Confidence 98764321 1122456778888887 7775444
No 177
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.12 E-value=2e-05 Score=83.56 Aligned_cols=182 Identities=16% Similarity=0.141 Sum_probs=102.8
Q ss_pred cCccccchhcHHHHHHHHh----------cCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHH
Q 048733 170 DDEVVGIESIKDKLIDLML----------NGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKN 239 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (887)
-..++|.+..+++|.+.+. ......+-+.|+|++|+|||+||+.+++. ....| +.++. .
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~------~ 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSS------S 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEH------H
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEch------H
Confidence 3578999999999988773 11223457889999999999999999984 22222 22222 1
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh------------
Q 048733 240 DLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID------------ 307 (887)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~------------ 307 (887)
++ .....+ .....+...+...-..++.+|+||+++...
T Consensus 86 ~l----~~~~~g--------------------------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 135 (322)
T 3eie_A 86 DL----VSKWMG--------------------------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASR 135 (322)
T ss_dssp HH----HTTTGG--------------------------GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTH
T ss_pred HH----hhcccc--------------------------hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHH
Confidence 11 110000 011222222333334567899999997441
Q ss_pred -HHHHHHHhcC---CCCCCcEEEEEccchhHHh-h-hccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHH
Q 048733 308 -FWRDVEHALL---DNKKCSRIIVTTRHMNVAK-F-CKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKEL 381 (887)
Q Consensus 308 -~~~~l~~~l~---~~~~gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~ 381 (887)
....+...+. ....+..||.||....... . .... ...+.++..+.++-.+++...+..... .. ....
T Consensus 136 ~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf--~~~i~~~~p~~~~r~~il~~~~~~~~~--~~---~~~~ 208 (322)
T 3eie_A 136 RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRF--ERRIYIPLPDLAARTTMFEINVGDTPC--VL---TKED 208 (322)
T ss_dssp HHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHTTCCC--CC---CHHH
T ss_pred HHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHccc--CeEEEeCCCCHHHHHHHHHHHhccCCC--CC---CHHH
Confidence 1233333332 2334556666776532211 0 1111 157788889999999999987743221 11 1345
Q ss_pred HHHHHHHhCCC-chHHHHH
Q 048733 382 SQDILAKCGGL-PLAIVAV 399 (887)
Q Consensus 382 ~~~I~~~c~G~-PLai~~~ 399 (887)
...|++.+.|. +-.|..+
T Consensus 209 l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 209 YRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp HHHHHHTTTTCCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHH
Confidence 67888888874 4344433
No 178
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=7.8e-06 Score=92.74 Aligned_cols=195 Identities=13% Similarity=0.085 Sum_probs=106.4
Q ss_pred cCccccchhcHHHHHHHHhcCC---------------CCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCC
Q 048733 170 DDEVVGIESIKDKLIDLMLNGR---------------SKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK 234 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~---------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 234 (887)
-..++|++..++++.+++.... +..+.+.|+|++|+||||+|+.+++.. .+ ..+.++.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCC
Confidence 3579999999999999987510 134688999999999999999999852 12 233444444
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh-----HH
Q 048733 235 EYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID-----FW 309 (887)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-----~~ 309 (887)
..... ++...+........ ........ . . .....+++.+||||+++... .+
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~----------------~~~~~~~~--~---~--~~~~~~~~~vliIDEid~l~~~~~~~l 168 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMS----------------VVGYFKHN--E---E--AQNLNGKHFVIIMDEVDGMSGGDRGGV 168 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCC----------------STTTTTC-----------CCSSTTSEEEEECSGGGCCTTSTTHH
T ss_pred cchHH-HHHHHHHHHhcccc----------------HHHHHhhh--h---h--hhhccCCCeEEEEECCCccchhhHHHH
Confidence 33332 22222211111000 00000000 0 0 00123567899999996541 23
Q ss_pred HHHHHhcCCCCCCcEEEEEccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHh
Q 048733 310 RDVEHALLDNKKCSRIIVTTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKC 389 (887)
Q Consensus 310 ~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c 389 (887)
..+...+... +..||+++.................+.+++++.++..+++.+.+..... ... .+....|++.+
T Consensus 169 ~~L~~~l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~--~i~---~~~l~~la~~s 241 (516)
T 1sxj_A 169 GQLAQFCRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF--KLD---PNVIDRLIQTT 241 (516)
T ss_dssp HHHHHHHHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CCC---TTHHHHHHHHT
T ss_pred HHHHHHHHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC--CCC---HHHHHHHHHHc
Confidence 4444444322 2335554443221111111122367899999999999988876643221 111 24567788999
Q ss_pred CCCc-hHHHHHh
Q 048733 390 GGLP-LAIVAVG 400 (887)
Q Consensus 390 ~G~P-Lai~~~~ 400 (887)
+|.+ -++..+.
T Consensus 242 ~GdiR~~i~~L~ 253 (516)
T 1sxj_A 242 RGDIRQVINLLS 253 (516)
T ss_dssp TTCHHHHHHHHT
T ss_pred CCcHHHHHHHHH
Confidence 9944 4555543
No 179
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.10 E-value=8.2e-07 Score=96.25 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=66.5
Q ss_pred ceeEEEEecCCCCCC--CccccccccccceeecCCCceeeecCccccccchhhh-cccccCeeeecccccccccccchhh
Q 048733 598 KLMKVLDLEDSPINY--LPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIR-NLKKLRSLIVFHYKYITGSIIPTEA 674 (887)
Q Consensus 598 ~~Lr~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~-~l~~L~~L~l~~~~~~~~~~~~~~~ 674 (887)
+.|++|+|++|.+.. +..-...+.+|++|+|++|. +.......+...+. ..++|++|++++|. ++. ..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~---l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~-----~~ 171 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS---LGPEACKDLRDLLLHDQCQITTLRLSNNP-LTA-----AG 171 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC---CCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHH-----HH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC---CCHHHHHHHHHHHHhcCCccceeeCCCCC-CCh-----HH
Confidence 566667776666652 11222344556666665543 11111112222221 34566666666652 111 01
Q ss_pred hhhccCCccccccccccccccccCceecchHH----HHHhhccccccceeEEeccCCh---hHHHHHHhcccCCcEEEEe
Q 048733 675 AAKIHRGFGSLRGLQSLRGLLALPTIEADSQV----LKELMMLRQLNMLSIRRQNGNG---RDLCALIANLENVETLGVL 747 (887)
Q Consensus 675 ~~~~p~~i~~L~~L~~L~~~~~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~---~~l~~~l~~~~~L~~L~l~ 747 (887)
...++..+..+++|++|+ ++.+.+.... ...+..+++|+.|+++++.... ..+...+...++|+.|+++
T Consensus 172 ~~~l~~~L~~~~~L~~L~----Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 172 VAVLMEGLAGNTSVTHLS----LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247 (372)
T ss_dssp HHHHHHHHHTCSSCCEEE----CTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECT
T ss_pred HHHHHHHHhcCCCcCEEe----CCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEecc
Confidence 122333344455555555 4455443322 3344555666666666543332 2344445555666777666
Q ss_pred ecCC
Q 048733 748 MKSK 751 (887)
Q Consensus 748 ~~~~ 751 (887)
+|..
T Consensus 248 ~N~i 251 (372)
T 3un9_A 248 FNEL 251 (372)
T ss_dssp TSSC
T ss_pred CCCC
Confidence 6644
No 180
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=5.6e-06 Score=89.50 Aligned_cols=100 Identities=11% Similarity=0.090 Sum_probs=62.9
Q ss_pred CCceEEEEeccCChh--HHHHHHHhcCCCCCCcEEEEEccchh-HHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCC
Q 048733 293 DKSYMVVLDDVWKID--FWRDVEHALLDNKKCSRIIVTTRHMN-VAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPS 369 (887)
Q Consensus 293 ~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 369 (887)
+++-++|||++...+ ....+...+.....+..+|++|.+.. +..... +....+.+.+++.++..+.+.+.+...+
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~--sR~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIK--SQCLLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHH--TTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHH--hhceEEecCCcCHHHHHHHHHHHHHHcC
Confidence 366799999997653 45556655544444677777776532 211111 1227899999999999999987763221
Q ss_pred CCCCCChHH-HHHHHHHHHHhCCCchHHHHH
Q 048733 370 SGGCCPSEL-KELSQDILAKCGGLPLAIVAV 399 (887)
Q Consensus 370 ~~~~~~~~~-~~~~~~I~~~c~G~PLai~~~ 399 (887)
. .-. .+....|++.++|.+-.+..+
T Consensus 211 ~-----~~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 211 I-----QLETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp C-----EECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred C-----CCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 0 111 356678889999988655433
No 181
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.08 E-value=2.5e-05 Score=84.10 Aligned_cols=184 Identities=10% Similarity=0.077 Sum_probs=101.5
Q ss_pred cCccccchhcHHHHHHHHhc----------CCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHH
Q 048733 170 DDEVVGIESIKDKLIDLMLN----------GRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKN 239 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (887)
-..++|.+..+++|.+.+.. .....+.|.|+|++|+|||+||+.+++. .... .+.++.+.-...
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~~- 156 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTSK- 156 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCCS-
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhcc-
Confidence 34689999999999887642 1123457889999999999999999884 2222 233443221100
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh-------------
Q 048733 240 DLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI------------- 306 (887)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------- 306 (887)
........+...+...-..++.+|+||+++..
T Consensus 157 -----------------------------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 201 (357)
T 3d8b_A 157 -----------------------------------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSR 201 (357)
T ss_dssp -----------------------------------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHH
T ss_pred -----------------------------------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHH
Confidence 00000111122222222356789999999533
Q ss_pred hHHHHHHHhcCC----CCCCcEEEEEccchh-HHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHH
Q 048733 307 DFWRDVEHALLD----NKKCSRIIVTTRHMN-VAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKEL 381 (887)
Q Consensus 307 ~~~~~l~~~l~~----~~~gs~iivTtR~~~-v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~ 381 (887)
.....+...+.. ...+..||.||.... +...... .-...+.+...+.++..+++...+..... . -..+.
T Consensus 202 ~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~-Rf~~~i~i~~p~~~~r~~il~~~~~~~~~--~---l~~~~ 275 (357)
T 3d8b_A 202 RIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR-RLVKRLYIPLPEASARKQIVINLMSKEQC--C---LSEEE 275 (357)
T ss_dssp HHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHHTSCB--C---CCHHH
T ss_pred HHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh-hCceEEEeCCcCHHHHHHHHHHHHhhcCC--C---ccHHH
Confidence 112333333322 123445555665432 1111111 11147788888999988888876633211 1 11456
Q ss_pred HHHHHHHhCC-CchHHHHHh
Q 048733 382 SQDILAKCGG-LPLAIVAVG 400 (887)
Q Consensus 382 ~~~I~~~c~G-~PLai~~~~ 400 (887)
...|++.+.| .+-.+..+.
T Consensus 276 l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 276 IEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp HHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHH
Confidence 7788899988 444555443
No 182
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.07 E-value=1.3e-06 Score=93.74 Aligned_cols=129 Identities=21% Similarity=0.315 Sum_probs=76.1
Q ss_pred HHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeeccCCCCh----hhh--cCCCcceeEEEec--ccCCc
Q 048733 731 LCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNMKKLPD----WIL--KLKNLIGSRLILS--GLTED 802 (887)
Q Consensus 731 l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~----~~~--~l~~L~~L~L~~~--~l~~~ 802 (887)
+...+..+++|+.|.+.++... .+..+. .+ +|+.|+|..+. ++. .+. .+++|+.|+|+.+ .....
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l---~l~~~~-~~-~L~~L~L~~~~--l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL---SIGKKP-RP-NLKSLEIISGG--LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC---BCCSCB-CT-TCSEEEEECSB--CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred HHHHHhcCCCCcEEEEeCCCCc---eecccc-CC-CCcEEEEecCC--CChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence 4456666778888888765211 122222 33 78888886542 221 122 5788888887632 11111
Q ss_pred --------Cc--CcCcccceeeeCcCCCceeE---EEcCCCccCccEEEEccCCCCCc-----cccccccCCCCCEEEEE
Q 048733 803 --------PI--SWFPKLRKLVLLNFEAVKSV---IIEKGAMPDIRELWIGPCPLLME-----IPIGIDHLRNLELLTFH 864 (887)
Q Consensus 803 --------~~--~~~~~L~~L~l~~~~~l~~~---~~~~~~lp~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~l~ 864 (887)
.+ ..||+|++|.+.+|...... ......+|+|+.|+|+.|. ++. ++.++.++++|++|+++
T Consensus 237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECC
Confidence 11 24788888888776532211 1112457888888887765 442 45566778888888888
Q ss_pred ech
Q 048733 865 DMS 867 (887)
Q Consensus 865 ~c~ 867 (887)
+|+
T Consensus 316 ~n~ 318 (362)
T 2ra8_A 316 YNY 318 (362)
T ss_dssp SBB
T ss_pred CCc
Confidence 875
No 183
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.06 E-value=8.9e-05 Score=78.96 Aligned_cols=190 Identities=15% Similarity=0.107 Sum_probs=104.5
Q ss_pred hhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCC
Q 048733 177 ESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHG 256 (887)
Q Consensus 177 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~ 256 (887)
++..+.+...+..+. -.+.+.++|+.|+|||++|+.+++...-...-. ...+......+.+...-..
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-------~~~c~~c~~c~~~~~~~~~----- 74 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQG-------HKSCGHCRGCQLMQAGTHP----- 74 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-------TBCCSCSHHHHHHHHTCCT-----
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-------CCCCCCCHHHHHHhcCCCC-----
Confidence 445566777666543 235688999999999999999887421111000 0000000011111100000
Q ss_pred CCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-----CCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEEEc
Q 048733 257 RDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-----KDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIVTT 329 (887)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt 329 (887)
+-.. . ...+.......+++.+ +.+.+ .+++-++|+|+++.. +..+.+...+.....++.+|++|
T Consensus 75 -d~~~--~-----~~~~~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 75 -DYYT--L-----APEKGKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp -TEEE--E-----CCCTTCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred -CEEE--E-----eccccCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 0000 0 0000001123333333 22222 245779999999765 45677777776666677777776
Q ss_pred cchh-HHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHHh
Q 048733 330 RHMN-VAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVG 400 (887)
Q Consensus 330 R~~~-v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 400 (887)
.+.. +..... +....+.+.+++.++..+.+.+.. . .. .+....+++.++|.|..+..+.
T Consensus 146 ~~~~~l~~ti~--SRc~~~~~~~~~~~~~~~~L~~~~--~-----~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 146 REPERLLATLR--SRCRLHYLAPPPEQYAVTWLSREV--T-----MS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp SCGGGSCHHHH--TTSEEEECCCCCHHHHHHHHHHHC--C-----CC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred CChHhCcHHHh--hcceeeeCCCCCHHHHHHHHHHhc--C-----CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 6543 222221 223789999999999999998875 1 11 3556779999999997665443
No 184
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.05 E-value=8.4e-05 Score=77.89 Aligned_cols=179 Identities=15% Similarity=0.173 Sum_probs=100.4
Q ss_pred cCccccchhcHHHHHHHHhc-----------CCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCH
Q 048733 170 DDEVVGIESIKDKLIDLMLN-----------GRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNK 238 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (887)
-..++|.+..+++|.+++.. +-...+.+.|+|++|+|||+||+.+++. .... ++.+. .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----h
Confidence 34689999998888877653 1123457889999999999999999984 2222 22322 2
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh-----------
Q 048733 239 NDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID----------- 307 (887)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~----------- 307 (887)
.++ .....+. ....+...+.......+.+|+||+++...
T Consensus 83 ~~l----~~~~~g~--------------------------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~ 132 (301)
T 3cf0_A 83 PEL----LTMWFGE--------------------------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 132 (301)
T ss_dssp HHH----HHHHHTT--------------------------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSS
T ss_pred HHH----HhhhcCc--------------------------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcc
Confidence 222 2222211 01223333444444578999999997431
Q ss_pred -----HHHHHHHhcCC--CCCCcEEEEEccchhHHh-h-hccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHH
Q 048733 308 -----FWRDVEHALLD--NKKCSRIIVTTRHMNVAK-F-CKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSEL 378 (887)
Q Consensus 308 -----~~~~l~~~l~~--~~~gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~ 378 (887)
....+...+.. ...+..||.||....... . .....-...+.++..+.++-.+++...+-.... .....
T Consensus 133 ~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~--~~~~~- 209 (301)
T 3cf0_A 133 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV--AKDVD- 209 (301)
T ss_dssp CSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--CSSCC-
T ss_pred hHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC--Cccch-
Confidence 12334443322 233556677776543221 1 111111257889999999888888776633211 11111
Q ss_pred HHHHHHHHHHhCCCchH
Q 048733 379 KELSQDILAKCGGLPLA 395 (887)
Q Consensus 379 ~~~~~~I~~~c~G~PLa 395 (887)
...+++.+.|.|=+
T Consensus 210 ---~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 210 ---LEFLAKMTNGFSGA 223 (301)
T ss_dssp ---HHHHHHTCSSCCHH
T ss_pred ---HHHHHHHcCCCCHH
Confidence 23456667776643
No 185
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=6.3e-05 Score=80.53 Aligned_cols=180 Identities=14% Similarity=0.154 Sum_probs=103.2
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCc-eeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFS-CRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
..++|.+..++.|...+..+. ...+.++|++|+||||+|+.+++... ...+. ...-++.+...... ..++++..+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~-~ir~~i~~~ 100 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGID-VVRNQIKDF 100 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHH-HHHTHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHH-HHHHHHHHH
Confidence 457899888888888888764 22388999999999999999987411 11111 11122222211211 111222211
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEE
Q 048733 250 HRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIV 327 (887)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 327 (887)
..... .+.+.+-++|+|+++.. +..+.+...+......+++|+
T Consensus 101 ~~~~~-----------------------------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il 145 (340)
T 1sxj_C 101 ASTRQ-----------------------------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCV 145 (340)
T ss_dssp HHBCC-----------------------------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEE
T ss_pred Hhhcc-----------------------------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 11000 01234678999999654 455566655544445667777
Q ss_pred Eccchh-HHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHH
Q 048733 328 TTRHMN-VAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAI 396 (887)
Q Consensus 328 TtR~~~-v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 396 (887)
+|.... +..... +....+.+.+++.++..+.+.+.+-.... . -..+..+.|++.++|.+--+
T Consensus 146 ~~n~~~~i~~~i~--sR~~~~~~~~l~~~~~~~~l~~~~~~~~~--~---i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 146 LANYAHKLTPALL--SQCTRFRFQPLPQEAIERRIANVLVHEKL--K---LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EESCGGGSCHHHH--TTSEEEECCCCCHHHHHHHHHHHHHTTTC--C---BCHHHHHHHHHHHTTCHHHH
T ss_pred EecCccccchhHH--hhceeEeccCCCHHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHcCCCHHHH
Confidence 665432 111111 11257899999999998888876522210 1 11456778889999987643
No 186
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.02 E-value=8.7e-05 Score=81.01 Aligned_cols=183 Identities=11% Similarity=0.055 Sum_probs=98.7
Q ss_pred cCccccchhcHHHHHHHHhcC----------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNG----------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKN 239 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (887)
-..++|.+..++.|.+++... ....+.|.|+|++|+|||+||+.+++. .... .+.++.+.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhcc-
Confidence 357899999999998877321 112457889999999999999999884 2222 222332221110
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh-------------
Q 048733 240 DLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI------------- 306 (887)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------- 306 (887)
. .......+...+...-...+.+|+||+++..
T Consensus 188 -~----------------------------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~ 232 (389)
T 3vfd_A 188 -Y----------------------------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASR 232 (389)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHH
T ss_pred -c----------------------------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHH
Confidence 0 0001122222222222345679999999644
Q ss_pred hHHHHHHHhcC---C-CCCCcEEEEEccchhHH-hhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHH
Q 048733 307 DFWRDVEHALL---D-NKKCSRIIVTTRHMNVA-KFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKEL 381 (887)
Q Consensus 307 ~~~~~l~~~l~---~-~~~gs~iivTtR~~~v~-~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~ 381 (887)
.....+...+. . ......||.||...... ..... .-...+.++..+.++-.+++...+..... .-..+.
T Consensus 233 ~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~-R~~~~i~i~~p~~~~r~~il~~~~~~~~~-----~l~~~~ 306 (389)
T 3vfd_A 233 RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR-RFIKRVYVSLPNEETRLLLLKNLLCKQGS-----PLTQKE 306 (389)
T ss_dssp HHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHTTSCC-----CSCHHH
T ss_pred HHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc-CcceEEEcCCcCHHHHHHHHHHHHHhcCC-----CCCHHH
Confidence 11122222221 1 12234555566543221 11111 11146889999999999999887643221 112346
Q ss_pred HHHHHHHhCCCch-HHHHH
Q 048733 382 SQDILAKCGGLPL-AIVAV 399 (887)
Q Consensus 382 ~~~I~~~c~G~PL-ai~~~ 399 (887)
...|++.+.|..- ++..+
T Consensus 307 ~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 307 LAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp HHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHH
Confidence 6788899988554 44443
No 187
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.00 E-value=0.00011 Score=81.57 Aligned_cols=184 Identities=13% Similarity=0.130 Sum_probs=99.9
Q ss_pred cCccccchhcHHHHHHHHhc----------CCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHH
Q 048733 170 DDEVVGIESIKDKLIDLMLN----------GRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKN 239 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (887)
-+.++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+.+++.. . ...++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~--~----~~~~~~v~~~~--- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA--N----NSTFFSISSSD--- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC--C----SSEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc--C----CCCEEEEeHHH---
Confidence 35689999999999887631 11234678899999999999999999842 1 11233333221
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh---------h---
Q 048733 240 DLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI---------D--- 307 (887)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---------~--- 307 (887)
+ .....+. .......+.. ..-..++.+|+||+++.. .
T Consensus 204 -l----~~~~~g~-----------------------~~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 252 (444)
T 2zan_A 204 -L----VSKWLGE-----------------------SEKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAAR 252 (444)
T ss_dssp ------------------------------------CCCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGH
T ss_pred -H----Hhhhcch-----------------------HHHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHH
Confidence 1 1110000 0011222222 222357789999999754 1
Q ss_pred -HHHHHHHhcCC---CCCCcEEEEEccchhHHh-hhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHH
Q 048733 308 -FWRDVEHALLD---NKKCSRIIVTTRHMNVAK-FCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELS 382 (887)
Q Consensus 308 -~~~~l~~~l~~---~~~gs~iivTtR~~~v~~-~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~ 382 (887)
....+...+.. ...+..||.||....... .... .-...+.++..+.++-.++|...+..... .-.....
T Consensus 253 ~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~-----~l~~~~l 326 (444)
T 2zan_A 253 RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR-RFEKRIYIPLPEAHARAAMFRLHLGSTQN-----SLTEADF 326 (444)
T ss_dssp HHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHTTSCE-----ECCHHHH
T ss_pred HHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh-hcceEEEeCCcCHHHHHHHHHHHHhcCCC-----CCCHHHH
Confidence 12223222222 234556666765542211 1100 11157788888888888888887633210 0113456
Q ss_pred HHHHHHhCCCc-hHHHHH
Q 048733 383 QDILAKCGGLP-LAIVAV 399 (887)
Q Consensus 383 ~~I~~~c~G~P-Lai~~~ 399 (887)
..|++.+.|.. -.|..+
T Consensus 327 ~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 327 QELGRKTDGYSGADISII 344 (444)
T ss_dssp HHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHH
Confidence 77888998853 344433
No 188
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.97 E-value=2.8e-07 Score=99.91 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=32.8
Q ss_pred hhhcCCCcceeEEEecccCCcC-------cCcCcccceeeeCcCCCcee-----EEEcCCCccCccEEEEccCCC
Q 048733 782 WILKLKNLIGSRLILSGLTEDP-------ISWFPKLRKLVLLNFEAVKS-----VIIEKGAMPDIRELWIGPCPL 844 (887)
Q Consensus 782 ~~~~l~~L~~L~L~~~~l~~~~-------~~~~~~L~~L~l~~~~~l~~-----~~~~~~~lp~L~~L~l~~c~~ 844 (887)
.+..+++|++|+|++|.+.... +...++|+.|++.+|. +.. +.......++|+.|+|++|+.
T Consensus 178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 3344555555555555544321 1234455555555543 111 111223468899999999974
No 189
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.95 E-value=5.3e-05 Score=81.33 Aligned_cols=183 Identities=17% Similarity=0.124 Sum_probs=99.7
Q ss_pred CccccchhcHHHHHHHHhc----------CCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHH
Q 048733 171 DEVVGIESIKDKLIDLMLN----------GRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKND 240 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (887)
..++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+.+++. ....| +.+..+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 4689999999999887631 1122345789999999999999999984 22222 222211 1
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh-------------
Q 048733 241 LLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID------------- 307 (887)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~------------- 307 (887)
+ . ... .......+...+...-..++.+|+||+++...
T Consensus 120 l----~----~~~----------------------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~ 169 (355)
T 2qp9_X 120 L----V----SKW----------------------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRR 169 (355)
T ss_dssp H----H----SCC-------------------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHH
T ss_pred H----h----hhh----------------------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHH
Confidence 1 1 000 00011222223333334578899999997542
Q ss_pred HHHHHHHhcC---CCCCCcEEEEEccchhHH-hhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHH
Q 048733 308 FWRDVEHALL---DNKKCSRIIVTTRHMNVA-KFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQ 383 (887)
Q Consensus 308 ~~~~l~~~l~---~~~~gs~iivTtR~~~v~-~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~ 383 (887)
....+...+. ....+..||.||...... ..... .-...+.++..+.++-.+++...+..... .. ......
T Consensus 170 ~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~--~~---~~~~l~ 243 (355)
T 2qp9_X 170 IKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR-RFERRIYIPLPDLAARTTMFEINVGDTPS--VL---TKEDYR 243 (355)
T ss_dssp HHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH-TCCEEEECCCCCHHHHHHHHHHHHTTSCB--CC---CHHHHH
T ss_pred HHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc-ccCEEEEeCCcCHHHHHHHHHHHHhhCCC--CC---CHHHHH
Confidence 1222332222 223345556566544211 11100 11157788889999999999887643211 11 134567
Q ss_pred HHHHHhCCC-chHHHHHh
Q 048733 384 DILAKCGGL-PLAIVAVG 400 (887)
Q Consensus 384 ~I~~~c~G~-PLai~~~~ 400 (887)
.|++.+.|. +-.|..+.
T Consensus 244 ~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 244 TLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHHHTTTCCHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHH
Confidence 788999884 43344433
No 190
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.95 E-value=1.8e-05 Score=72.95 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=35.3
Q ss_pred ccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 172 EVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|+...++++.+.+........-|.|+|++|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999998887642222234679999999999999999985
No 191
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.94 E-value=0.00011 Score=78.12 Aligned_cols=165 Identities=15% Similarity=0.134 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCC
Q 048733 181 DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGP 260 (887)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 260 (887)
..+..++.........+.|+|++|+||||||+.+++..... .+ .+++++. .++..++...+...
T Consensus 24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~~-------- 87 (324)
T 1l8q_A 24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKKG-------- 87 (324)
T ss_dssp HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHHT--------
T ss_pred HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHcC--------
Confidence 34444444433234578899999999999999999842111 11 2344442 33444444433221
Q ss_pred CCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCChh---H-HHHHHHhcCC-CCCCcEEEEEccchh--
Q 048733 261 DRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKID---F-WRDVEHALLD-NKKCSRIIVTTRHMN-- 333 (887)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~---~-~~~l~~~l~~-~~~gs~iivTtR~~~-- 333 (887)
..... ...+ .+.-+|+|||+.... . .+.+...+.. ...|..||+||.+..
T Consensus 88 ------------------~~~~~----~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~ 144 (324)
T 1l8q_A 88 ------------------TINEF----RNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQK 144 (324)
T ss_dssp ------------------CHHHH----HHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred ------------------cHHHH----HHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHH
Confidence 11222 2222 236799999996543 2 2233333221 123557888776431
Q ss_pred -------HHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCch
Q 048733 334 -------VAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPL 394 (887)
Q Consensus 334 -------v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 394 (887)
+...+... ..+++++ +.++..+++...+..... ..+ .++...|++.+ |..-
T Consensus 145 l~~l~~~L~sR~~~~---~~i~l~~-~~~e~~~il~~~~~~~~~--~l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 145 LDGVSDRLVSRFEGG---ILVEIEL-DNKTRFKIIKEKLKEFNL--ELR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp CTTSCHHHHHHHHTS---EEEECCC-CHHHHHHHHHHHHHHTTC--CCC---HHHHHHHHHHC-SSHH
T ss_pred HHHhhhHhhhcccCc---eEEEeCC-CHHHHHHHHHHHHHhcCC--CCC---HHHHHHHHHhC-CCHH
Confidence 12222211 5689999 999999999887643211 112 45667788888 7654
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.91 E-value=0.00011 Score=76.98 Aligned_cols=179 Identities=13% Similarity=0.074 Sum_probs=98.0
Q ss_pred cCccccchhcHHHHHHHHhcC----------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHH
Q 048733 170 DDEVVGIESIKDKLIDLMLNG----------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKN 239 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (887)
-..++|.+..++.+.+.+... ....+.+.|+|++|+||||+|+.+++. .... .+.++.+.-...
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~~- 93 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTSK- 93 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSSS-
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhhc-
Confidence 346899999999998876431 112457889999999999999999984 2222 223333221100
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh-------------
Q 048733 240 DLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI------------- 306 (887)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------- 306 (887)
............+......++.+|+||+++..
T Consensus 94 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 138 (297)
T 3b9p_A 94 -----------------------------------YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASR 138 (297)
T ss_dssp -----------------------------------SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSH
T ss_pred -----------------------------------ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHH
Confidence 00001112222222333456789999999643
Q ss_pred hHHHHHHHh---cCCC--CCCcEEEEEccchh-----HHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCCh
Q 048733 307 DFWRDVEHA---LLDN--KKCSRIIVTTRHMN-----VAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPS 376 (887)
Q Consensus 307 ~~~~~l~~~---l~~~--~~gs~iivTtR~~~-----v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~ 376 (887)
.....+... ++.. +.+..||.||.... +...+ . ..+.++..+.++-.+++...+-.... ..
T Consensus 139 ~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~--~---~~i~~~~p~~~~r~~il~~~~~~~~~--~~-- 209 (297)
T 3b9p_A 139 RLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRF--T---KRVYVSLPDEQTRELLLNRLLQKQGS--PL-- 209 (297)
T ss_dssp HHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHC--C---EEEECCCCCHHHHHHHHHHHHGGGSC--CS--
T ss_pred HHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhC--C---eEEEeCCcCHHHHHHHHHHHHHhcCC--CC--
Confidence 111122222 2221 13455666666542 12211 1 56778878888888888776532210 11
Q ss_pred HHHHHHHHHHHHhCCCch-HHHHH
Q 048733 377 ELKELSQDILAKCGGLPL-AIVAV 399 (887)
Q Consensus 377 ~~~~~~~~I~~~c~G~PL-ai~~~ 399 (887)
..+....|++.+.|.+- ++..+
T Consensus 210 -~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 210 -DTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp -CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred -CHHHHHHHHHHcCCCCHHHHHHH
Confidence 13456788889999875 44333
No 193
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.90 E-value=5.1e-06 Score=80.38 Aligned_cols=45 Identities=22% Similarity=0.409 Sum_probs=38.5
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++||+.+++++.+.+.... ...+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999987643 446789999999999999999874
No 194
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.84 E-value=5.1e-06 Score=78.03 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=39.8
Q ss_pred CcceeEEEecccCCcC---cCcCcccceeeeCcCCCceeEEEc-CCC----ccCccEEEEccCCCCCcc-ccccccCCCC
Q 048733 788 NLIGSRLILSGLTEDP---ISWFPKLRKLVLLNFEAVKSVIIE-KGA----MPDIRELWIGPCPLLMEI-PIGIDHLRNL 858 (887)
Q Consensus 788 ~L~~L~L~~~~l~~~~---~~~~~~L~~L~l~~~~~l~~~~~~-~~~----lp~L~~L~l~~c~~l~~l-p~~~~~l~~L 858 (887)
+|+.|+|++|.++... +..+++|++|.|.+|..+++.... +.. .++|++|+|++|+.++.- -..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 3455555555443322 224555555555555544322110 111 245677777777655531 1234456777
Q ss_pred CEEEEEech
Q 048733 859 ELLTFHDMS 867 (887)
Q Consensus 859 ~~L~l~~c~ 867 (887)
++|++++||
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777776
No 195
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.83 E-value=3e-05 Score=74.46 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=64.4
Q ss_pred chhcHHHHHHHHhcCC-CCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccC
Q 048733 176 IESIKDKLIDLMLNGR-SKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSK 254 (887)
Q Consensus 176 r~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 254 (887)
.+..++.+.+++..-. .....+.|+|++|+||||||+.+++.......+. +++++ ..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH
Confidence 4444555555554422 2346899999999999999999988532112221 23333 44555555444432110
Q ss_pred CCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccC--ChhHHH--HHHHhcCC-CCCCcEEEEEc
Q 048733 255 HGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVW--KIDFWR--DVEHALLD-NKKCSRIIVTT 329 (887)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~--~~~~~~--~l~~~l~~-~~~gs~iivTt 329 (887)
......+. +.-+|||||++ ..+.|. .+...+.. ...|..||+||
T Consensus 92 --------------------------~~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~ts 140 (180)
T 3ec2_A 92 --------------------------TKFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITT 140 (180)
T ss_dssp --------------------------SHHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred --------------------------HHHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 12222222 56799999997 334443 22222221 12466788888
Q ss_pred cc
Q 048733 330 RH 331 (887)
Q Consensus 330 R~ 331 (887)
..
T Consensus 141 n~ 142 (180)
T 3ec2_A 141 NY 142 (180)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 196
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.77 E-value=1.7e-05 Score=85.43 Aligned_cols=96 Identities=15% Similarity=0.083 Sum_probs=64.1
Q ss_pred eeEEeec--cCCCChhhhcCCCcceeEEEe-cccCCcC---cCcCcccceeeeCcCCCceeEEE-cCCCccCccEEEEcc
Q 048733 769 YLSLRGN--MKKLPDWILKLKNLIGSRLIL-SGLTEDP---ISWFPKLRKLVLLNFEAVKSVII-EKGAMPDIRELWIGP 841 (887)
Q Consensus 769 ~L~L~~~--~~~lp~~~~~l~~L~~L~L~~-~~l~~~~---~~~~~~L~~L~l~~~~~l~~~~~-~~~~lp~L~~L~l~~ 841 (887)
.++++++ +..+|. +..+++|+.|+|++ |.+...+ +..+++|+.|+|.++. +..++. .++.+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 4455554 456777 77777788888875 7766544 3466777777777763 555543 356788888888888
Q ss_pred CCCCCccccccccCCCCCEEEEEech
Q 048733 842 CPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 842 c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
|. +..+|..+....+|+.|++.+|+
T Consensus 90 N~-l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred Cc-cceeCHHHcccCCceEEEeeCCC
Confidence 76 56666654433348888888776
No 197
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.73 E-value=0.00038 Score=71.11 Aligned_cols=48 Identities=27% Similarity=0.345 Sum_probs=34.7
Q ss_pred cCccccchhcHHHHHHHHh---cC-------CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 170 DDEVVGIESIKDKLIDLML---NG-------RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-+.++|.+..++++.+.+. .. ....+-+.|+|++|+||||||+.+++.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3568999888877765432 21 011334789999999999999999884
No 198
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.72 E-value=9.3e-05 Score=82.52 Aligned_cols=175 Identities=11% Similarity=0.130 Sum_probs=97.9
Q ss_pred CccccchhcHHHHHHHHhcC-----------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHH
Q 048733 171 DEVVGIESIKDKLIDLMLNG-----------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKN 239 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (887)
..++|.+..+++|.+++... .....-|.|+|++|+|||++|+.+++. ....| +.++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEch------
Confidence 46899999999988876531 223456889999999999999999884 32222 233321
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh-------------
Q 048733 240 DLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI------------- 306 (887)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------- 306 (887)
++...+ .......+...+.....+++.+|+||+++..
T Consensus 273 ----~l~~~~--------------------------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~ 322 (489)
T 3hu3_A 273 ----EIMSKL--------------------------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322 (489)
T ss_dssp ----HHHTSC--------------------------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHH
T ss_pred ----Hhhhhh--------------------------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHH
Confidence 111000 0001123344455555667889999999421
Q ss_pred hHHHHHHHhcC--CCCCCcEEEEEccchhH-Hhhhcc-CCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHH
Q 048733 307 DFWRDVEHALL--DNKKCSRIIVTTRHMNV-AKFCKL-SSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELS 382 (887)
Q Consensus 307 ~~~~~l~~~l~--~~~~gs~iivTtR~~~v-~~~~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~ 382 (887)
.....+...+. ....+..||.||..... ...... ..-...+.+...+.++-.+++...+-.... ..... .
T Consensus 323 ~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l--~~~~~----l 396 (489)
T 3hu3_A 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL--ADDVD----L 396 (489)
T ss_dssp HHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB--CTTCC----H
T ss_pred HHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC--cchhh----H
Confidence 12233333333 22234555656665422 111111 111146889999999999999887633211 11111 3
Q ss_pred HHHHHHhCCC
Q 048733 383 QDILAKCGGL 392 (887)
Q Consensus 383 ~~I~~~c~G~ 392 (887)
.++++.+.|.
T Consensus 397 ~~la~~t~g~ 406 (489)
T 3hu3_A 397 EQVANETHGH 406 (489)
T ss_dssp HHHHHTCTTC
T ss_pred HHHHHHccCC
Confidence 4566777774
No 199
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.72 E-value=2.5e-05 Score=84.04 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=37.5
Q ss_pred cCCCceeEEEEecC-CCCCCCc-cccccccccceeecCCCceeeecCccccccch-hhhcccccCeeeeccc
Q 048733 594 IANFKLMKVLDLED-SPINYLP-EGVGNLFNLHLLNARNTKILDLAHTFVSELPE-EIRNLKKLRSLIVFHY 662 (887)
Q Consensus 594 ~~~~~~Lr~L~L~~-~~l~~lp-~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~-~i~~l~~L~~L~l~~~ 662 (887)
+..+++|+.|+|++ |.+..+| ..++.|.+|++|+|++| .+..+|+ .+.+|++|++|+|++|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N--------~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS--------GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS--------CCCEECTTGGGSCSCCCEEECCSS
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC--------ccceeCHHHhcCCcCCCEEeCCCC
Confidence 56666666677764 6666555 44666666666666654 3555444 3456666666666665
No 200
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00018 Score=78.14 Aligned_cols=176 Identities=15% Similarity=0.135 Sum_probs=96.6
Q ss_pred CccccchhcHHHHHHHHhc-----------CCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHH
Q 048733 171 DEVVGIESIKDKLIDLMLN-----------GRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKN 239 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (887)
+++.|.++.+++|.+.+.- +-...+-|.++|++|.|||+||+.+++. ....| +.+..+.-.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~sk- 254 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVDK- 254 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCCS-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhccc-
Confidence 4678899888888776542 1234567889999999999999999984 33222 23333221110
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh------------h
Q 048733 240 DLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI------------D 307 (887)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------~ 307 (887)
....+...+...+...-...+.+|++|+++.. .
T Consensus 255 -----------------------------------~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~ 299 (437)
T 4b4t_L 255 -----------------------------------YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADR 299 (437)
T ss_dssp -----------------------------------SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTT
T ss_pred -----------------------------------cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcch
Confidence 00001122222333333457899999999742 0
Q ss_pred ----HHHHHHHhcC--CCCCCcEEEEEccchhHHhh--hccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHH
Q 048733 308 ----FWRDVEHALL--DNKKCSRIIVTTRHMNVAKF--CKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELK 379 (887)
Q Consensus 308 ----~~~~l~~~l~--~~~~gs~iivTtR~~~v~~~--~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~ 379 (887)
....++..+. ....+..||.||-....... .....-...+.++.-+.++-.++|..++-..... ...+
T Consensus 300 ~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~--~d~d-- 375 (437)
T 4b4t_L 300 EIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT--GEFD-- 375 (437)
T ss_dssp HHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC--SCCC--
T ss_pred HHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC--cccC--
Confidence 1223333332 22334566777765543221 1111112578888878888788887665332211 1112
Q ss_pred HHHHHHHHHhCCCc
Q 048733 380 ELSQDILAKCGGLP 393 (887)
Q Consensus 380 ~~~~~I~~~c~G~P 393 (887)
...|++.+.|.-
T Consensus 376 --l~~lA~~t~G~s 387 (437)
T 4b4t_L 376 --FEAAVKMSDGFN 387 (437)
T ss_dssp --HHHHHHTCCSCC
T ss_pred --HHHHHHhCCCCC
Confidence 345677777754
No 201
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00015 Score=77.31 Aligned_cols=177 Identities=15% Similarity=0.128 Sum_probs=96.9
Q ss_pred cCccccchhcHHHHHHHHhc-----------CCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCH
Q 048733 170 DDEVVGIESIKDKLIDLMLN-----------GRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNK 238 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 238 (887)
=+++.|.++.+++|.+.+.- +-...+-|.++|++|.|||.||+++++. ....| +.+..+.-.+.
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~sk 221 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQK 221 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSCS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhcc
Confidence 35678999888888765432 2223456789999999999999999984 33333 23333221110
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh-----------h
Q 048733 239 NDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI-----------D 307 (887)
Q Consensus 239 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~ 307 (887)
....+...+...+...-...+.+|++|+++.. +
T Consensus 222 ------------------------------------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~ 265 (405)
T 4b4t_J 222 ------------------------------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGD 265 (405)
T ss_dssp ------------------------------------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGG
T ss_pred ------------------------------------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCc
Confidence 00001122223333333457899999999753 0
Q ss_pred -----HHHHHHHhcCC--CCCCcEEEEEccchhHHh-h-hccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHH
Q 048733 308 -----FWRDVEHALLD--NKKCSRIIVTTRHMNVAK-F-CKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSEL 378 (887)
Q Consensus 308 -----~~~~l~~~l~~--~~~gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~ 378 (887)
....+...+.. ...+-.||.||....... . .....-...+.++.-+.++-.++|..+.-.... ....+
T Consensus 266 ~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l--~~dvd- 342 (405)
T 4b4t_J 266 SEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL--TRGIN- 342 (405)
T ss_dssp GHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC--CSSCC-
T ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC--CccCC-
Confidence 12223333322 233444555665543321 1 111112368889888888888888776533211 11112
Q ss_pred HHHHHHHHHHhCCCc
Q 048733 379 KELSQDILAKCGGLP 393 (887)
Q Consensus 379 ~~~~~~I~~~c~G~P 393 (887)
...|++.+.|.-
T Consensus 343 ---l~~lA~~t~G~S 354 (405)
T 4b4t_J 343 ---LRKVAEKMNGCS 354 (405)
T ss_dssp ---HHHHHHHCCSCC
T ss_pred ---HHHHHHHCCCCC
Confidence 355777787754
No 202
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.70 E-value=0.00023 Score=74.24 Aligned_cols=147 Identities=15% Similarity=0.074 Sum_probs=90.6
Q ss_pred cchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccC-ccCCCceeEEEEeCC-CCCHHHHHHHHHHHHhhc
Q 048733 175 GIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEG-LKTHFSCRAWVTVGK-EYNKNDLLRTIIKEFHRL 252 (887)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v~~-~~~~~~~~~~i~~~l~~~ 252 (887)
|-++.++.|...+..+. .++..++|++|+||||+|..+.+... ....+....++..+. ...+. ..+++++.+...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id-~ir~li~~~~~~ 77 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGID-DIRTIKDFLNYS 77 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHH-HHHHHHHHHTSC
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHH-HHHHHHHHHhhc
Confidence 34556677777777665 67888999999999999999987311 111122234444332 22222 223333333211
Q ss_pred cCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--hHHHHHHHhcCCCCCCcEEEEEcc
Q 048733 253 SKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI--DFWRDVEHALLDNKKCSRIIVTTR 330 (887)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR 330 (887)
. ..+++-++|+|+++.. +..+.+...+......+.+|++|.
T Consensus 78 p-------------------------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~ 120 (305)
T 2gno_A 78 P-------------------------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR 120 (305)
T ss_dssp C-------------------------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEES
T ss_pred c-------------------------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 0 0245678999999754 567778888876666777877765
Q ss_pred ch-hHHhhhccCCCcceeecCCCChhhHHHHHHHhh
Q 048733 331 HM-NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKA 365 (887)
Q Consensus 331 ~~-~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 365 (887)
+. .+..... +. .+++.++++++..+.+.+..
T Consensus 121 ~~~kl~~tI~--SR--~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 121 RWHYLLPTIK--SR--VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CGGGSCHHHH--TT--SEEEECCCCHHHHHHHHHHH
T ss_pred ChHhChHHHH--ce--eEeCCCCCHHHHHHHHHHHh
Confidence 54 2322222 22 88999999999999888775
No 203
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.68 E-value=3.1e-05 Score=71.09 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=33.5
Q ss_pred ccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 172 EVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|++..++++.+.+........-|.|+|++|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 5789999998888877642111234779999999999999999884
No 204
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.66 E-value=0.00013 Score=88.17 Aligned_cols=45 Identities=27% Similarity=0.512 Sum_probs=38.4
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+.++||+.++.++++.+.... ...+.|+|++|+||||+|+.+++.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999997653 334679999999999999999884
No 205
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.63 E-value=0.0037 Score=66.29 Aligned_cols=172 Identities=22% Similarity=0.228 Sum_probs=93.5
Q ss_pred CccccchhcHHHHHHHHhcC---CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHH
Q 048733 171 DEVVGIESIKDKLIDLMLNG---RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIK 247 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~ 247 (887)
+.++|.+..++.+...+..+ ......+.|+|++|+||||||+.+++. ....|. ... +....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~s-g~~~~---------- 88 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTS-GPVLV---------- 88 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEE-TTTCC----------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEe-chHhc----------
Confidence 45789888777777666542 223457899999999999999999984 222211 011 11000
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--hHHHHHHHhcCCCC-----
Q 048733 248 EFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI--DFWRDVEHALLDNK----- 320 (887)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~----- 320 (887)
....+...+ ..+ .++-++++|++... ...+.+...+....
T Consensus 89 -------------------------------~~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~ 135 (334)
T 1in4_A 89 -------------------------------KQGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMI 135 (334)
T ss_dssp -------------------------------SHHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC--
T ss_pred -------------------------------CHHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceee
Confidence 011111111 112 23457788888543 23333332221111
Q ss_pred ---C----------CcEEE-EEccchhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHH
Q 048733 321 ---K----------CSRII-VTTRHMNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDIL 386 (887)
Q Consensus 321 ---~----------gs~ii-vTtR~~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~ 386 (887)
. ...++ .|++...+....... ....+.+++.+.++-.+++.+.+-... .....+.+..|+
T Consensus 136 ~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR-~~l~~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia 209 (334)
T 1in4_A 136 GKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSR-FGIILELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIA 209 (334)
T ss_dssp -------------CCCEEEEEESCGGGSCHHHHTT-CSEEEECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHH
T ss_pred ccCcccccccccCCCeEEEEecCCcccCCHHHHHh-cCceeeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHH
Confidence 0 11222 344443322211111 113578999999999999988763211 112256788899
Q ss_pred HHhCCCchHHH
Q 048733 387 AKCGGLPLAIV 397 (887)
Q Consensus 387 ~~c~G~PLai~ 397 (887)
+.++|.|-.+.
T Consensus 210 ~~~~G~~R~a~ 220 (334)
T 1in4_A 210 KRSRGTPRIAI 220 (334)
T ss_dssp HTSTTCHHHHH
T ss_pred HhcCCChHHHH
Confidence 99999996544
No 206
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.62 E-value=5e-05 Score=74.52 Aligned_cols=53 Identities=19% Similarity=0.087 Sum_probs=34.8
Q ss_pred hcHHHHHHHHhcCCCC--cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEe
Q 048733 178 SIKDKLIDLMLNGRSK--RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV 232 (887)
Q Consensus 178 ~~~~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 232 (887)
..++.+.+++...... ...+.|+|++|+|||+||+.+++. .......++|+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~ 90 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh
Confidence 3445555666544221 267889999999999999999985 3223334566654
No 207
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00031 Score=76.06 Aligned_cols=176 Identities=14% Similarity=0.088 Sum_probs=95.5
Q ss_pred CccccchhcHHHHHHHHhc-----------CCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHH
Q 048733 171 DEVVGIESIKDKLIDLMLN-----------GRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKN 239 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (887)
+++.|.++.+++|.+.+.- +-...+-|.++|++|.|||.||+.+++. ....| +.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhhc--
Confidence 4688999888888765421 2234567889999999999999999984 33332 2333221110
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh------------h
Q 048733 240 DLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI------------D 307 (887)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------~ 307 (887)
..-..+...+...+...-...+.+|++|+++.. .
T Consensus 282 ----------------------------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~ 327 (467)
T 4b4t_H 282 ----------------------------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDN 327 (467)
T ss_dssp ----------------------------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGG
T ss_pred ----------------------------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccH
Confidence 000001122223333333457899999998743 0
Q ss_pred ----HHHHHHHhcCC--CCCCcEEEEEccchhHHh-h-hccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHH
Q 048733 308 ----FWRDVEHALLD--NKKCSRIIVTTRHMNVAK-F-CKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELK 379 (887)
Q Consensus 308 ----~~~~l~~~l~~--~~~gs~iivTtR~~~v~~-~-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~ 379 (887)
....+...+.. ...+..||.||-...... . .....-...+.++.-+.++-.++|..++-.... ....+
T Consensus 328 ~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l--~~dvd-- 403 (467)
T 4b4t_H 328 EVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV--ERGIR-- 403 (467)
T ss_dssp HHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB--CSSCC--
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC--CCCCC--
Confidence 11222223322 223444555665443221 1 111112268888888888888888776533211 11112
Q ss_pred HHHHHHHHHhCCCc
Q 048733 380 ELSQDILAKCGGLP 393 (887)
Q Consensus 380 ~~~~~I~~~c~G~P 393 (887)
...|++.|.|.-
T Consensus 404 --l~~LA~~T~GfS 415 (467)
T 4b4t_H 404 --WELISRLCPNST 415 (467)
T ss_dssp --HHHHHHHCCSCC
T ss_pred --HHHHHHHCCCCC
Confidence 345777887753
No 208
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.57 E-value=0.00016 Score=80.67 Aligned_cols=45 Identities=27% Similarity=0.482 Sum_probs=38.2
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+.++||+.+++++.+.+.... ..-+.|+|++|+|||++|+.+++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997643 335679999999999999999874
No 209
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.56 E-value=0.00034 Score=76.57 Aligned_cols=269 Identities=12% Similarity=0.075 Sum_probs=130.4
Q ss_pred cCCCCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCc-cccccccccceeecCCCc------------ee
Q 048733 568 SIKDSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLP-EGVGNLFNLHLLNARNTK------------IL 634 (887)
Q Consensus 568 ~~~~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~------------~L 634 (887)
...|.+|+++.+-..- ..+-...|.+|.+|+.++|.++ +..++ ..+.++..|+.+.+..+- .+
T Consensus 67 F~~c~~L~~i~lp~~i---~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 67 FQGCRKVTEIKIPSTV---REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTCTTEEEEECCTTC---CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred hhCCCCceEEEeCCCc---cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 3457778887775321 2344566788888888888654 55443 345566666666554321 00
Q ss_pred ee-cCccccccch-hhhcccccCeeeecccccccccccchhhhhhccCC-ccccccccccccccccCceecchHHHHHhh
Q 048733 635 DL-AHTFVSELPE-EIRNLKKLRSLIVFHYKYITGSIIPTEAAAKIHRG-FGSLRGLQSLRGLLALPTIEADSQVLKELM 711 (887)
Q Consensus 635 dl-~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~p~~-i~~L~~L~~L~~~~~l~~~~~~~~~~~~l~ 711 (887)
.+ ....+..++. .+.++.+|+.+.+..+ ...++.+ +..+++|+.+. ++.. +..-....+.
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~------------~~~I~~~~F~~c~~L~~i~----l~~~-~~~I~~~~F~ 205 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDS------------METLHNGLFSGCGKLKSIK----LPRN-LKIIRDYCFA 205 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT------------CCEECTTTTTTCTTCCBCC----CCTT-CCEECTTTTT
T ss_pred ccccCccccccchhhhcccCCCcEEecCCc------------cceeccccccCCCCceEEE----cCCC-ceEeCchhhc
Confidence 00 0111222222 3456777777777653 2223322 44556666554 2221 1111112234
Q ss_pred ccccccceeEEeccCChhHHHHHHhcccCCcEEEEeecCCccccccCcccccccccceeEEeeccC--------------
Q 048733 712 MLRQLNMLSIRRQNGNGRDLCALIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNMK-------------- 777 (887)
Q Consensus 712 ~l~~L~~L~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-------------- 777 (887)
++..|+.+.+..+.... ........+|+.+.+.... . .+.-..+... .+|+.+.+..+..
T Consensus 206 ~~~~L~~i~~~~~~~~i---~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~-~~l~~~~~~~~~~~i~~~~F~~~~~l~ 279 (394)
T 4fs7_A 206 ECILLENMEFPNSLYYL---GDFALSKTGVKNIIIPDSF-T-ELGKSVFYGC-TDLESISIQNNKLRIGGSLFYNCSGLK 279 (394)
T ss_dssp TCTTCCBCCCCTTCCEE---CTTTTTTCCCCEEEECTTC-C-EECSSTTTTC-SSCCEEEECCTTCEECSCTTTTCTTCC
T ss_pred cccccceeecCCCceEe---ehhhcccCCCceEEECCCc-e-eccccccccc-ccceeEEcCCCcceeeccccccccccc
Confidence 44555544443210000 0111223345554443210 0 0000011111 1333333332211
Q ss_pred -------CCC-hhhhcCCCcceeEEEecc--cCCcCcCcCcccceeeeCcCCCceeEEE-cCCCccCccEEEEccCCCCC
Q 048733 778 -------KLP-DWILKLKNLIGSRLILSG--LTEDPISWFPKLRKLVLLNFEAVKSVII-EKGAMPDIRELWIGPCPLLM 846 (887)
Q Consensus 778 -------~lp-~~~~~l~~L~~L~L~~~~--l~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~lp~L~~L~l~~c~~l~ 846 (887)
.++ ..+..+.+|+.+.+..+- +....+..+.+|+.+.+.+ .++.+.. .+..+++|+.+.+..+ ++
T Consensus 280 ~~~~~~~~i~~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~ 355 (394)
T 4fs7_A 280 KVIYGSVIVPEKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LR 355 (394)
T ss_dssp EEEECSSEECTTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CC
T ss_pred eeccCceeeccccccccccccccccccccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--cc
Confidence 111 124456777777775431 2333444667777777753 3455532 3456788999888654 56
Q ss_pred cccc-ccccCCCCCEEEEEech
Q 048733 847 EIPI-GIDHLRNLELLTFHDMS 867 (887)
Q Consensus 847 ~lp~-~~~~l~~L~~L~l~~c~ 867 (887)
.++. .+.+|++|+++++...-
T Consensus 356 ~I~~~aF~~C~~L~~i~lp~~~ 377 (394)
T 4fs7_A 356 KIGANAFQGCINLKKVELPKRL 377 (394)
T ss_dssp EECTTTBTTCTTCCEEEEEGGG
T ss_pred EehHHHhhCCCCCCEEEECCCC
Confidence 6544 77899999999986553
No 210
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00056 Score=74.16 Aligned_cols=48 Identities=25% Similarity=0.296 Sum_probs=37.7
Q ss_pred cCccccchhcHHHHHHHHhc-----------CCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 170 DDEVVGIESIKDKLIDLMLN-----------GRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-+++.|.++.+++|.+.+.- +-...+-|.++|++|.|||+||+.+++.
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45688999999888776542 2234566889999999999999999984
No 211
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00059 Score=73.10 Aligned_cols=176 Identities=14% Similarity=0.101 Sum_probs=93.6
Q ss_pred CccccchhcHHHHHHHHhc-----------CCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHH
Q 048733 171 DEVVGIESIKDKLIDLMLN-----------GRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKN 239 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 239 (887)
+++.|.++.+++|.+.+.- +-...+-|.++|++|.|||.||+++++. ....| +.++.+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELIQ-- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGCC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhhh--
Confidence 4677899888888776532 1123466889999999999999999984 33332 2233221100
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh------------h
Q 048733 240 DLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI------------D 307 (887)
Q Consensus 240 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------------~ 307 (887)
. ....+...+...+...-+..+.+|++|+++.. .
T Consensus 255 ------------k----------------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~ 300 (437)
T 4b4t_I 255 ------------K----------------------YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGER 300 (437)
T ss_dssp ------------S----------------------SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCC
T ss_pred ------------c----------------------cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccH
Confidence 0 00001122222222333457899999998743 0
Q ss_pred ----HHHHHHHhcC--CCCCCcEEEEEccchhHHhh-h-ccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHH
Q 048733 308 ----FWRDVEHALL--DNKKCSRIIVTTRHMNVAKF-C-KLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELK 379 (887)
Q Consensus 308 ----~~~~l~~~l~--~~~~gs~iivTtR~~~v~~~-~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~ 379 (887)
....++..+. ....+..||.||-..+.... . ....-...+.++.-+.++-.++|..++-...- ....+
T Consensus 301 ~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l--~~dvd-- 376 (437)
T 4b4t_I 301 EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL--SEDVN-- 376 (437)
T ss_dssp HHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB--CSCCC--
T ss_pred HHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC--CCcCC--
Confidence 1222333222 22334455666655443221 1 11111246788877888888888776533211 11112
Q ss_pred HHHHHHHHHhCCCc
Q 048733 380 ELSQDILAKCGGLP 393 (887)
Q Consensus 380 ~~~~~I~~~c~G~P 393 (887)
...|++.+.|.-
T Consensus 377 --l~~LA~~T~GfS 388 (437)
T 4b4t_I 377 --LETLVTTKDDLS 388 (437)
T ss_dssp --HHHHHHHCCSCC
T ss_pred --HHHHHHhCCCCC
Confidence 345677777643
No 212
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.50 E-value=0.00056 Score=70.14 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=34.0
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+.++|.+..+.++.+.+.........|.|+|++|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 35789999999888776542222245779999999999999999984
No 213
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.47 E-value=0.00091 Score=73.85 Aligned_cols=176 Identities=12% Similarity=0.093 Sum_probs=95.2
Q ss_pred CccccchhcHHHHHHHHh---cC-------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHH
Q 048733 171 DEVVGIESIKDKLIDLML---NG-------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKND 240 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 240 (887)
.+++|.++.++++.+.+. .. -...+-|.|+|++|+|||+||+.+++. ....| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 468999988777766543 21 011234779999999999999999984 22222 23332221110
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--------------
Q 048733 241 LLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI-------------- 306 (887)
Q Consensus 241 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-------------- 306 (887)
........+...+.....+.+.+|+||+++..
T Consensus 89 ----------------------------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~ 134 (476)
T 2ce7_A 89 ----------------------------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDE 134 (476)
T ss_dssp ----------------------------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CH
T ss_pred ----------------------------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHH
Confidence 00001122333444455567899999999642
Q ss_pred --hHHHHHHHhcC--CCCCCcEEEEEccchhHHhh--hccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHH
Q 048733 307 --DFWRDVEHALL--DNKKCSRIIVTTRHMNVAKF--CKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKE 380 (887)
Q Consensus 307 --~~~~~l~~~l~--~~~~gs~iivTtR~~~v~~~--~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~ 380 (887)
.....+...+. ....+..||.||........ .....-...+.+++.+.++-.+++..++-.... ....+
T Consensus 135 ~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l--~~~v~--- 209 (476)
T 2ce7_A 135 REQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL--AEDVN--- 209 (476)
T ss_dssp HHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--CTTCC---
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC--cchhh---
Confidence 11233333332 12235566667766543221 111111247788888888877888766533211 11111
Q ss_pred HHHHHHHHhCCCc
Q 048733 381 LSQDILAKCGGLP 393 (887)
Q Consensus 381 ~~~~I~~~c~G~P 393 (887)
...|++.+.|..
T Consensus 210 -l~~la~~t~G~s 221 (476)
T 2ce7_A 210 -LEIIAKRTPGFV 221 (476)
T ss_dssp -HHHHHHTCTTCC
T ss_pred -HHHHHHhcCCCc
Confidence 344778888877
No 214
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00069 Score=73.54 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=37.1
Q ss_pred cCccccchhcHHHHHHHHhc-----------CCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 170 DDEVVGIESIKDKLIDLMLN-----------GRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
=+++.|.++.+++|.+.+.- +-...+-|.++|++|.|||.||+.+++.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 35678999998888765421 1234567889999999999999999984
No 215
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.40 E-value=0.00084 Score=70.70 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=36.9
Q ss_pred ccccchhcHHHHHHHHhcC-------CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 172 EVVGIESIKDKLIDLMLNG-------RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|.+..++.+...+... ......+.|+|++|+|||++|+.+++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 5789998888888777652 122468999999999999999999884
No 216
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.35 E-value=0.0001 Score=71.00 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=45.8
Q ss_pred cccccCCCceeEEEEecCC-CCC-----CCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeeccc
Q 048733 590 VKSCIANFKLMKVLDLEDS-PIN-----YLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHY 662 (887)
Q Consensus 590 ~~~~~~~~~~Lr~L~L~~~-~l~-----~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~ 662 (887)
+...+...+.|++|+|++| .+. .+...+...++|++|+|++|. +.......+...+...++|++|++++|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~---i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR---SNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC---CCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC---CChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 3455677888888999888 776 244555666778888777764 111122245555666677888888876
No 217
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.33 E-value=0.0016 Score=77.87 Aligned_cols=45 Identities=31% Similarity=0.487 Sum_probs=38.4
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+.++||+.+++++.+.|.... ..-+.|+|++|+|||++|+.+++.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999987653 345679999999999999999874
No 218
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.33 E-value=0.00088 Score=70.00 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=37.0
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+.++|++..+.++.+.+.........|.|+|++|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 35889999999998887653222345779999999999999999884
No 219
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.30 E-value=0.0023 Score=71.11 Aligned_cols=92 Identities=13% Similarity=0.033 Sum_probs=57.9
Q ss_pred eEEEEeccCCh--hHHHHHHHhcCCCCCCcEEE-EE---------cc----ch----hHHhhhccCCCcceeecCCCChh
Q 048733 296 YMVVLDDVWKI--DFWRDVEHALLDNKKCSRII-VT---------TR----HM----NVAKFCKLSSSVRIHELETLPPD 355 (887)
Q Consensus 296 ~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ii-vT---------tR----~~----~v~~~~~~~~~~~~~~l~~L~~~ 355 (887)
-++++|++... +.++.+...+...... .+| .| |. .. .+.+.| ..+.+.+++.+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~------~~~~~~~~~~~ 369 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV------MIIRTMLYTPQ 369 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE------EEEECCCCCHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc------ceeeCCCCCHH
Confidence 39999999755 5677787777655444 344 44 32 11 122222 56799999999
Q ss_pred hHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHh-CCCchHHHHH
Q 048733 356 EAWKLFCRKAFGPSSGGCCPSELKELSQDILAKC-GGLPLAIVAV 399 (887)
Q Consensus 356 e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c-~G~PLai~~~ 399 (887)
+..+++...+-... .. -..+....|++.+ +|.|-.+..+
T Consensus 370 e~~~iL~~~~~~~~--~~---~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 370 EMKQIIKIRAQTEG--IN---ISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHHHHHHT--CC---BCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHHHHHHhC--CC---CCHHHHHHHHHHccCCCHHHHHHH
Confidence 99999987752111 01 1245667788888 7887654443
No 220
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.27 E-value=0.00017 Score=74.23 Aligned_cols=47 Identities=28% Similarity=0.409 Sum_probs=35.3
Q ss_pred CccccchhcHHHHHHHHhc----------CCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLN----------GRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|.+..++.+.+.+.. +....+-+.|+|++|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 4689999888888776541 1111233779999999999999999984
No 221
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.24 E-value=0.00043 Score=64.90 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=21.3
Q ss_pred eeEEEEecCCCCCCC-ccccccccccceeecCCCc
Q 048733 599 LMKVLDLEDSPINYL-PEGVGNLFNLHLLNARNTK 632 (887)
Q Consensus 599 ~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~ 632 (887)
.|+.|||++|.++.. ...+..+++|++|+|++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 577888888776621 2345566666666666654
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.23 E-value=0.0025 Score=76.02 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=37.9
Q ss_pred CccccchhcHHHHHHHHhcCC-------CCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGR-------SKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|.+..++.+...+.... .+...+.++|++|+|||++|+.+++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999998888776421 22347899999999999999999884
No 223
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.16 E-value=0.0024 Score=74.70 Aligned_cols=178 Identities=11% Similarity=0.116 Sum_probs=98.2
Q ss_pred ccCccccchhcHHHHHHHHhc----C-------CCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCC
Q 048733 169 EDDEVVGIESIKDKLIDLMLN----G-------RSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYN 237 (887)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 237 (887)
.-+++.|.++.+++|.+++.- . -...+-|.++|++|+|||+||+.+++. ...+| +.|+.+
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~---- 272 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP---- 272 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH----
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH----
Confidence 345678999998888776532 1 124567889999999999999999984 33332 333321
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh---------hH
Q 048733 238 KNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI---------DF 308 (887)
Q Consensus 238 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---------~~ 308 (887)
+++ .. ........+...+....+..+.+|+||+++.. +.
T Consensus 273 ------~l~----sk----------------------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~ 320 (806)
T 3cf2_A 273 ------EIM----SK----------------------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320 (806)
T ss_dssp ------HHH----SS----------------------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTT
T ss_pred ------Hhh----cc----------------------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChH
Confidence 111 10 00112233444455555678899999999743 11
Q ss_pred ----HHHHHHhcCC--CCCCcEEEEEccchhH-Hhhhcc-CCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHH
Q 048733 309 ----WRDVEHALLD--NKKCSRIIVTTRHMNV-AKFCKL-SSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKE 380 (887)
Q Consensus 309 ----~~~l~~~l~~--~~~gs~iivTtR~~~v-~~~~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~ 380 (887)
..++...+.. ...+-.||.||..... -..... ..-...+++..-+.++-.++|..+.-.... ....+
T Consensus 321 ~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~--~~dvd--- 395 (806)
T 3cf2_A 321 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL--ADDVD--- 395 (806)
T ss_dssp HHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE--CTTCC---
T ss_pred HHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC--CcccC---
Confidence 1222222211 1223344555554332 222211 111257889888888888888876532211 11111
Q ss_pred HHHHHHHHhCCCc
Q 048733 381 LSQDILAKCGGLP 393 (887)
Q Consensus 381 ~~~~I~~~c~G~P 393 (887)
...|++++.|.-
T Consensus 396 -l~~lA~~T~Gfs 407 (806)
T 3cf2_A 396 -LEQVANETHGHV 407 (806)
T ss_dssp -HHHHHHHCCSCC
T ss_pred -HHHHHHhcCCCC
Confidence 355778888765
No 224
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.13 E-value=0.0014 Score=68.91 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=37.1
Q ss_pred CccccchhcHHHHHHHHhcC------------CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNG------------RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|.+..++.+...+... ......+.|+|++|+|||++|+.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999998877541 112346779999999999999999884
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.13 E-value=0.001 Score=79.25 Aligned_cols=45 Identities=27% Similarity=0.482 Sum_probs=38.4
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+.++||+.+++++...+.... ..-+.++|++|+|||++|+.+++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997643 234679999999999999999874
No 226
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.13 E-value=0.0035 Score=68.41 Aligned_cols=93 Identities=8% Similarity=0.080 Sum_probs=66.2
Q ss_pred cccceeEEeeccCCCC-hhhhcCCCcceeEEEec--ccCCcCcCcCcccceeeeCcCCCceeEEE-cCCCccCccEEEEc
Q 048733 765 QHLQYLSLRGNMKKLP-DWILKLKNLIGSRLILS--GLTEDPISWFPKLRKLVLLNFEAVKSVII-EKGAMPDIRELWIG 840 (887)
Q Consensus 765 ~~L~~L~L~~~~~~lp-~~~~~l~~L~~L~L~~~--~l~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~lp~L~~L~l~ 840 (887)
.+|+.+.+..+...++ ..+.++.+|+.++|..+ .+....+.++.+|+.+.+.. +++.+.. .+..+++|+.+.+.
T Consensus 297 ~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 297 SSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTCCEEEECTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred ccccccccccccceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 4899999977665544 34667899999999653 23334555778888888864 2555532 35678999999997
Q ss_pred cCCCCCccccccccCCCCCEE
Q 048733 841 PCPLLMEIPIGIDHLRNLELL 861 (887)
Q Consensus 841 ~c~~l~~lp~~~~~l~~L~~L 861 (887)
.+ ++.+...+.+|++|+.+
T Consensus 375 ~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 375 KR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp GG--GGGGGGGBCTTCEEEEE
T ss_pred CC--CEEhhheecCCCCCcEE
Confidence 54 55666778899998875
No 227
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.06 E-value=0.0055 Score=62.19 Aligned_cols=46 Identities=35% Similarity=0.541 Sum_probs=32.5
Q ss_pred CccccchhcHHHHHHHHh---cC--------CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLML---NG--------RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~---~~--------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
++++|.+..+.++.+... .. .-... +.|+|++|+||||||+.+++.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 468888877666654432 10 11123 889999999999999999984
No 228
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.04 E-value=0.0011 Score=61.02 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+.|+|+.|+|||||++.+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999885
No 229
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.93 E-value=0.0054 Score=63.20 Aligned_cols=47 Identities=32% Similarity=0.449 Sum_probs=33.7
Q ss_pred cCccccchhcHHHHHHHHhc---C--------CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 170 DDEVVGIESIKDKLIDLMLN---G--------RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~---~--------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-+.++|.+..++++.+.... . .-... +.|+|++|+||||||+.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 45788988777766554321 0 11123 889999999999999999984
No 230
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.91 E-value=0.0027 Score=62.76 Aligned_cols=45 Identities=24% Similarity=0.137 Sum_probs=33.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHH
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLL 242 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 242 (887)
...++.|+|.+|+||||||..++. ..-..++|++....++...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHH
Confidence 356899999999999999999987 112357788876655655443
No 231
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.90 E-value=0.0066 Score=67.44 Aligned_cols=48 Identities=31% Similarity=0.404 Sum_probs=34.4
Q ss_pred cCccccchhcHHHHHHHHh---cCC-------CCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 170 DDEVVGIESIKDKLIDLML---NGR-------SKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-.+++|.++.+.++.+... ... .-.+-+.|+|++|+||||||+.++..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999887777665443 210 01123889999999999999999984
No 232
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.71 E-value=0.0058 Score=64.83 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=35.8
Q ss_pred ccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 172 EVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|++..++.+...+..+. -+.++|++|+|||+||+.+++.
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHHH
Confidence 57899999998888777643 5789999999999999999884
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.68 E-value=0.0048 Score=73.50 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=39.0
Q ss_pred ccCccccchhcHHHHHHHHhc-----------CCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 169 EDDEVVGIESIKDKLIDLMLN-----------GRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.-+.++|.+..+++|.+++.. .-.....|.|+|++|+||||||+.+++.
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 345689999999999888753 1123457889999999999999999883
No 234
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.67 E-value=0.00062 Score=71.25 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=29.9
Q ss_pred chhcHHHHHHHHhcCCC-CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 176 IESIKDKLIDLMLNGRS-KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 176 r~~~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+....+.+.+++..... ....+.|+|++|+|||+||..+++.
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33444455566665322 2457889999999999999999985
No 235
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.65 E-value=0.0053 Score=69.66 Aligned_cols=47 Identities=26% Similarity=0.537 Sum_probs=35.7
Q ss_pred CccccchhcHHHHHHHHhc----CCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLN----GRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|.++..+.+.+.+.- ......++.|+|++|+||||||+.++..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578988887777654432 1224568999999999999999999884
No 236
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.60 E-value=0.00071 Score=65.01 Aligned_cols=122 Identities=14% Similarity=0.074 Sum_probs=76.7
Q ss_pred CCCCceeEEEeecC-CCCC--ccccccccCCCceeEEEEecCCCCC-----CCccccccccccceeecCCCceeeecCcc
Q 048733 569 IKDSKVRSVILFNV-DKLP--DSFVKSCIANFKLMKVLDLEDSPIN-----YLPEGVGNLFNLHLLNARNTKILDLAHTF 640 (887)
Q Consensus 569 ~~~~~lrsL~~~~~-~~~~--~~~~~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~ 640 (887)
...+.+++|.+.++ .... ...+...+...+.|++|+|++|.+. .+...+...++|++|+|++|. +....
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~---i~~~g 109 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF---ISGSG 109 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC---CCHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc---CCHHH
Confidence 35677888888776 4321 1223345667788999999999886 244555666788888888764 22222
Q ss_pred ccccchhhhcccccCeeee--cccccccccccchhhhhhccCCccccccccccccccccCceecc
Q 048733 641 VSELPEEIRNLKKLRSLIV--FHYKYITGSIIPTEAAAKIHRGFGSLRGLQSLRGLLALPTIEAD 703 (887)
Q Consensus 641 l~~lp~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~p~~i~~L~~L~~L~~~~~l~~~~~~ 703 (887)
...+...+...++|++|++ ++| .++. .....+...+...++|++|+ ++.+.++
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N-~i~~-----~g~~~l~~~L~~n~~L~~L~----L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQ-PLGN-----NVEMEIANMLEKNTTLLKFG----YHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSS-CCCH-----HHHHHHHHHHHHCSSCCEEE----CCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCC-CCCH-----HHHHHHHHHHHhCCCcCEEe----ccCCCCC
Confidence 3346667777788999999 555 2221 12223444456667888888 6666664
No 237
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.60 E-value=0.015 Score=60.32 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+.++|++|+|||+||+.+++.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999984
No 238
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.59 E-value=0.0095 Score=64.91 Aligned_cols=102 Identities=10% Similarity=0.131 Sum_probs=66.1
Q ss_pred ccceeEEeeccCCCC-hhhhcCCCcceeEEEec--ccCCcCcCcCcccceeeeCcCCCceeEEE-cCCCccCccEEEEcc
Q 048733 766 HLQYLSLRGNMKKLP-DWILKLKNLIGSRLILS--GLTEDPISWFPKLRKLVLLNFEAVKSVII-EKGAMPDIRELWIGP 841 (887)
Q Consensus 766 ~L~~L~L~~~~~~lp-~~~~~l~~L~~L~L~~~--~l~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~lp~L~~L~l~~ 841 (887)
+|+.+.+......+. ..+.++++|+.+.+... .+....+.++.+|+.+.+-+ .++.+.. .+..+.+|+.+.|-.
T Consensus 266 ~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 266 YLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp SCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT
T ss_pred cccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc
Confidence 677777655443322 23456788888887532 13334455677888888754 3555532 355688999999854
Q ss_pred CCCCCcccc-ccccCCCCCEEEEEechhhhh
Q 048733 842 CPLLMEIPI-GIDHLRNLELLTFHDMSKQVC 871 (887)
Q Consensus 842 c~~l~~lp~-~~~~l~~L~~L~l~~c~~~~~ 871 (887)
+ ++.+.. .+.+|++|+.+++.++...+.
T Consensus 344 s--v~~I~~~aF~~C~~L~~i~~~~~~~~~~ 372 (394)
T 4gt6_A 344 S--VTKIPESAFSNCTALNNIEYSGSRSQWN 372 (394)
T ss_dssp T--CCBCCGGGGTTCTTCCEEEESSCHHHHH
T ss_pred c--cCEEhHhHhhCCCCCCEEEECCceeehh
Confidence 3 566644 678999999999988765443
No 239
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.56 E-value=0.035 Score=56.77 Aligned_cols=46 Identities=30% Similarity=0.470 Sum_probs=32.8
Q ss_pred CccccchhcHHHHHHHHhc-----------C-CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLN-----------G-RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~-----------~-~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++.|.++.+++|.+.+.. + ..... +.|+|++|+||||||+.++..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 4678888888877765421 0 11223 899999999999999999984
No 240
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.56 E-value=0.0013 Score=66.69 Aligned_cols=59 Identities=24% Similarity=0.269 Sum_probs=38.3
Q ss_pred CCCceeEEEEecCCCCCCCc---cccccccccceeecCCCceeeecCccccccchhhhccc--ccCeeeeccc
Q 048733 595 ANFKLMKVLDLEDSPINYLP---EGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLK--KLRSLIVFHY 662 (887)
Q Consensus 595 ~~~~~Lr~L~L~~~~l~~lp---~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~--~L~~L~l~~~ 662 (887)
.+++.|+.|+|++|.+..++ ..+..+++|++|+|++|. +..+ ..+..+. +|++|++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~--------i~~~-~~l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE--------LKSE-RELDKIKGLKLEELWLDGN 230 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC--------CCSG-GGGGGGTTSCCSEEECTTS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc--------cCCc-hhhhhcccCCcceEEccCC
Confidence 45667788888888777543 455677788877777654 4443 2233344 7788888776
No 241
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.49 E-value=0.031 Score=66.59 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=37.2
Q ss_pred CccccchhcHHHHHHHHhcC-------CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNG-------RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 45889999998888776531 123457899999999999999999884
No 242
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.43 E-value=0.0057 Score=66.19 Aligned_cols=47 Identities=28% Similarity=0.358 Sum_probs=35.4
Q ss_pred CccccchhcHHHHHHHHhc----------------------------CCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLN----------------------------GRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|.+..++.|...+.. .......+.++|++|+|||++|+.+++.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 4578998888888776620 0112346889999999999999999984
No 243
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.38 E-value=0.0029 Score=65.06 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=45.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEe--CCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTV--GKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPT 271 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 271 (887)
.+++.|+|++|+|||+||.+++.. .-..++|++. .+..+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~--------------------------------- 164 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG--------------------------------- 164 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT---------------------------------
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh---------------------------------
Confidence 467889999999999999999874 1123456665 222100
Q ss_pred ccccccCCHHHHHHHHHHHhCCCceEEEEeccCC
Q 048733 272 PEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWK 305 (887)
Q Consensus 272 ~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~ 305 (887)
...+.+...+.+.+.+.+.+ +||+|++..
T Consensus 165 ----~~~~le~~l~~i~~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 165 ----YNTDFNVFVDDIARAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp ----CBCCHHHHHHHHHHHHHHCS-EEEEECCTT
T ss_pred ----hhcCHHHHHHHHHHHHhhCC-EEEEecccc
Confidence 00234566666677676666 999999954
No 244
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.31 E-value=0.024 Score=68.37 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=37.4
Q ss_pred CccccchhcHHHHHHHHhcC-------CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNG-------RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|.+..++.+...+... ..+...+.|+|++|+|||++|+.+++.
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999888877542 123467889999999999999999884
No 245
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.27 E-value=0.0034 Score=63.60 Aligned_cols=81 Identities=15% Similarity=0.065 Sum_probs=56.1
Q ss_pred CCceeEEEeecCCCCCccccccccCCCceeEEEEecCCCCCCCcccccccc--ccceeecCCCceeeecCcccc-ccc--
Q 048733 571 DSKVRSVILFNVDKLPDSFVKSCIANFKLMKVLDLEDSPINYLPEGVGNLF--NLHLLNARNTKILDLAHTFVS-ELP-- 645 (887)
Q Consensus 571 ~~~lrsL~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~L~--~L~~L~L~~~~~Ldl~~~~l~-~lp-- 645 (887)
+++|++|.+.++.......++..+..+++|+.|+|++|.+..+ ..+..+. +|++|+|++|. +. .+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np--------l~~~~~~~ 239 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS--------LCDTFRDQ 239 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST--------TGGGCSSH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc--------CccccCcc
Confidence 4667777777776533223445667899999999999999876 3456565 78888887764 43 233
Q ss_pred -----hhhhcccccCeeeec
Q 048733 646 -----EEIRNLKKLRSLIVF 660 (887)
Q Consensus 646 -----~~i~~l~~L~~L~l~ 660 (887)
..+..+++|+.|+-.
T Consensus 240 ~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHHHCTTCCEESSC
T ss_pred hhHHHHHHHHCcccCeECCc
Confidence 345678888888643
No 246
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.20 E-value=0.012 Score=62.20 Aligned_cols=100 Identities=15% Similarity=0.122 Sum_probs=61.1
Q ss_pred HHHHHHh-cCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCC
Q 048733 182 KLIDLML-NGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGP 260 (887)
Q Consensus 182 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 260 (887)
.|...|. .+=....++.|+|++|+||||||.+++.... ..-..++|++....++.. .+++++....
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~------ 114 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLK------ 114 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGG------
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchh------
Confidence 3444444 3323467999999999999999999987422 122346788877766654 4455543211
Q ss_pred CCCCCCCCCCCccccccCCHHHHHHHHHHHhC-CCceEEEEeccC
Q 048733 261 DRHAEGPLLPTPEEIHNMEETDLITTLRDHLK-DKSYMVVLDDVW 304 (887)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~ 304 (887)
.. ......+.+++...+...++ .+.-++|+|.+-
T Consensus 115 ---------~l-~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 115 ---------SL-LISQPDHGEQALEIVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp ---------GC-EEECCSSHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred ---------hh-hhhhccCHHHHHHHHHHHhhhcCCCeEEehHhh
Confidence 00 01122345666666666554 456799999974
No 247
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.05 E-value=0.008 Score=57.14 Aligned_cols=125 Identities=22% Similarity=0.103 Sum_probs=63.8
Q ss_pred EEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCC---CCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKE---YNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPT 271 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 271 (887)
..|.|++..|.||||+|-...-. .-++=..+.++...+. .....++ +.+......... +.....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~-------gf~~~~ 95 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNLL----EPHGVEFQVMAT-------GFTWET 95 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHHH----GGGTCEEEECCT-------TCCCCG
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHHH----HhCCcEEEEccc-------ccccCC
Confidence 45667777789999999877663 2233223445543332 2233333 333111000000 000000
Q ss_pred cc-ccccCCHHHHHHHHHHHhCCCc-eEEEEeccCC-----hhHHHHHHHhcCCCCCCcEEEEEccch
Q 048733 272 PE-EIHNMEETDLITTLRDHLKDKS-YMVVLDDVWK-----IDFWRDVEHALLDNKKCSRIIVTTRHM 332 (887)
Q Consensus 272 ~~-~~~~~~~~~l~~~l~~~L~~kr-~LlVlDdv~~-----~~~~~~l~~~l~~~~~gs~iivTtR~~ 332 (887)
+. ..+...........++.+.+.+ =|||||++-. .-..+++...+........||+|+|+.
T Consensus 96 ~~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 96 QNREADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 00 0001112334455556665555 4999999832 234456666666666678899999986
No 248
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.87 E-value=0.035 Score=56.83 Aligned_cols=102 Identities=7% Similarity=0.020 Sum_probs=59.7
Q ss_pred HHHHHHh----cCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCC
Q 048733 182 KLIDLML----NGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGR 257 (887)
Q Consensus 182 ~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~ 257 (887)
.|...|. .+=... ++.|.|++|+||||||.+++........-..++||+....++.. .+++++.+..
T Consensus 13 ~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d--- 83 (333)
T 3io5_A 13 MMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPE--- 83 (333)
T ss_dssp HHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGG---
T ss_pred HHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHH---
Confidence 4555555 332223 78999999999999999887642211112467899988887763 2555554321
Q ss_pred CCCCCCCCCCCCCCccccccCCHHHH-HHHHHHH--h-CCCceEEEEeccCC
Q 048733 258 DGPDRHAEGPLLPTPEEIHNMEETDL-ITTLRDH--L-KDKSYMVVLDDVWK 305 (887)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~--L-~~kr~LlVlDdv~~ 305 (887)
.. --....+.++. .+.+... + +++.-+||+|-|-.
T Consensus 84 ------------~l-lv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 84 ------------RV-IHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp ------------GE-EEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTT
T ss_pred ------------He-EEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccc
Confidence 00 00122244555 4433332 3 45678999999854
No 249
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.85 E-value=0.016 Score=58.13 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=40.5
Q ss_pred HHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccC----CCceeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 183 LIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKT----HFSCRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
|..+|..+=....++.|+|++|+|||||+..++....... .-..++|++....+....+. .+++.+
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~ 82 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERY 82 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHc
Confidence 3444433322346999999999999999999887421111 23467888877655554432 334443
No 250
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.83 E-value=0.017 Score=57.46 Aligned_cols=134 Identities=18% Similarity=0.152 Sum_probs=62.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC--CCC
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPL--LPT 271 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~--~~~ 271 (887)
..++.|+|++|+|||||+..++...... -..++|+.... ....+...+ ..++..........-...+... ...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCc
Confidence 4589999999999999999988532111 12355665433 344433332 2332111100000000000000 000
Q ss_pred ccccccCCHHHHHHHHHHHhCC-Cce--EEEEeccC-----ChhHHHHHHHhcCC--CCCCcEEEEEccch
Q 048733 272 PEEIHNMEETDLITTLRDHLKD-KSY--MVVLDDVW-----KIDFWRDVEHALLD--NKKCSRIIVTTRHM 332 (887)
Q Consensus 272 ~~~~~~~~~~~l~~~l~~~L~~-kr~--LlVlDdv~-----~~~~~~~l~~~l~~--~~~gs~iivTtR~~ 332 (887)
.......+.+++...+...+.. +.- +||+|..- +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0000122456666666655532 344 99999985 22233333333321 12467888888765
No 251
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.77 E-value=0.04 Score=58.38 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=44.4
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccC----CCceeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKT----HFSCRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
.|..+|..+=....++.|+|.+|+||||||..++....... .-..++|++....++...+. .++..+
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~ 180 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRF 180 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHc
Confidence 34444444434567999999999999999999887422211 23467899988877776554 334443
No 252
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.74 E-value=0.073 Score=56.51 Aligned_cols=164 Identities=10% Similarity=-0.075 Sum_probs=100.0
Q ss_pred HHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCC
Q 048733 183 LIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDR 262 (887)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 262 (887)
+.+.+. + .-.++..++|+.|.||++.+..+.+... ...|+....+.+....++.++.
T Consensus 9 l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~-------------------- 65 (343)
T 1jr3_D 9 LRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAIF-------------------- 65 (343)
T ss_dssp HHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHHH--------------------
T ss_pred HHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHHH--------------------
Confidence 444444 2 2356888999999999999988877311 1233321222233333333322
Q ss_pred CCCCCCCCCccccccCCHHHHHHHHHH-HhCCCceEEEEeccCC---hhHHHHHHHhcCCCCCCcEEEEEccc-------
Q 048733 263 HAEGPLLPTPEEIHNMEETDLITTLRD-HLKDKSYMVVLDDVWK---IDFWRDVEHALLDNKKCSRIIVTTRH------- 331 (887)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~iivTtR~------- 331 (887)
+.+.. =+-+.+-++|+|+++. .+.++.+...+.....++.+|+++-.
T Consensus 66 ----------------------~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~ 123 (343)
T 1jr3_D 66 ----------------------SLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQEN 123 (343)
T ss_dssp ----------------------HHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTT
T ss_pred ----------------------HHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHh
Confidence 22211 1235567889999865 36788888888766667777776532
Q ss_pred hhHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHH
Q 048733 332 MNVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVA 398 (887)
Q Consensus 332 ~~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 398 (887)
..+...... ....++..+++.++....+.+.+-..+ ..-..+.+..|++.++|.+..+..
T Consensus 124 ~k~~~~i~s--r~~~~~~~~l~~~~l~~~l~~~~~~~g-----~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 124 AAWFTALAN--RSVQVTCQTPEQAQLPRWVAARAKQLN-----LELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp SHHHHHHTT--TCEEEEECCCCTTHHHHHHHHHHHHTT-----CEECHHHHHHHHHSSTTCHHHHHH
T ss_pred hHHHHHHHh--CceEEEeeCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHhchHHHHHHH
Confidence 123333222 227889999999999888877663221 112256778899999998876654
No 253
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.73 E-value=0.0066 Score=59.61 Aligned_cols=112 Identities=12% Similarity=0.055 Sum_probs=59.8
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTP 272 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 272 (887)
...++.|+|..|+||||++..+.+. ...+-..++.+....+. . ....++..++.. .+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~------------------~~ 67 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTS------------------LP 67 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCS------------------SC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCC------------------cc
Confidence 3568999999999999999888774 22222223334322211 1 111111111100 00
Q ss_pred cccccCCHHHHHHHHHHHhCCCce-EEEEeccCCh--hHHHHHHHhcCCCCCCcEEEEEccc
Q 048733 273 EEIHNMEETDLITTLRDHLKDKSY-MVVLDDVWKI--DFWRDVEHALLDNKKCSRIIVTTRH 331 (887)
Q Consensus 273 ~~~~~~~~~~l~~~l~~~L~~kr~-LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~ 331 (887)
........++.+.+.+.+.+.++ +||+|.+... +..+.+. .+.+. |-.||+|-+.
T Consensus 68 -~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~~--gi~Vil~Gl~ 125 (223)
T 2b8t_A 68 -SVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVAN-ILAEN--GFVVIISGLD 125 (223)
T ss_dssp -CEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHH-HHHHT--TCEEEEECCS
T ss_pred -ccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHH-HHHhC--CCeEEEEecc
Confidence 11112335566666666655544 9999999543 3444333 33322 6789999885
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.59 E-value=0.0077 Score=58.93 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=29.0
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 179 IKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-.++|.+.+........+|+|+|+.|+|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555443345689999999999999999988763
No 255
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.47 E-value=0.017 Score=62.80 Aligned_cols=126 Identities=10% Similarity=0.074 Sum_probs=74.9
Q ss_pred HHhcccCCcEEEEeecCCccccccCcccccccccceeEEeeccCCCCh-hhhcCCCcceeEEEec--ccCCcCcCcCccc
Q 048733 734 LIANLENVETLGVLMKSKEEILDLQSLSSPPQHLQYLSLRGNMKKLPD-WILKLKNLIGSRLILS--GLTEDPISWFPKL 810 (887)
Q Consensus 734 ~l~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~lp~-~~~~l~~L~~L~L~~~--~l~~~~~~~~~~L 810 (887)
.+.++.+|+.+.+.... . .+.-..+... .+|+.+.+......++. .|.++.+|+.+.|..+ .+....+.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~-~-~I~~~aF~~c-~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-V-SIGTGAFMNC-PALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTC-C-EECTTTTTTC-TTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTC
T ss_pred eeeecccccEEeccccc-c-eecCcccccc-cccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCC
Confidence 45566778887775331 1 1111222333 38999999776655554 4557899999999754 2444556678889
Q ss_pred ceeeeCcCCCceeEEE-cCCCccCccEEEEccCCCCCccccccccCCCCCEEEEEech
Q 048733 811 RKLVLLNFEAVKSVII-EKGAMPDIRELWIGPCPLLMEIPIGIDHLRNLELLTFHDMS 867 (887)
Q Consensus 811 ~~L~l~~~~~l~~~~~-~~~~lp~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 867 (887)
+.+.+-. .++.+.. .+..+++|+.+.+.++.. .+ ..+..+.+|+.|.+....
T Consensus 337 ~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~--~~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 337 ERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRS--QW-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHH--HH-HTCBCCCCC---------
T ss_pred CEEEECc--ccCEEhHhHhhCCCCCCEEEECCcee--eh-hhhhccCCCCEEEeCCCC
Confidence 9998853 3455532 356789999999987532 12 356678899988876543
No 256
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.45 E-value=0.034 Score=58.47 Aligned_cols=67 Identities=22% Similarity=0.279 Sum_probs=43.0
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccC----CCceeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKT----HFSCRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
.|...|..+=....++.|+|.+|+||||||.+++....... .-..++|++....++...+. ++++.+
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~ 165 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKAL 165 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHh
Confidence 34444433322356899999999999999999886422111 12467899988877766554 334444
No 257
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.41 E-value=0.015 Score=56.53 Aligned_cols=41 Identities=32% Similarity=0.317 Sum_probs=33.0
Q ss_pred chhcHHHHHHHHhcC-CCCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 176 IESIKDKLIDLMLNG-RSKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 176 r~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
|++.++.+.+.+... .....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 556677788877753 34568999999999999999998876
No 258
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.34 E-value=0.038 Score=58.53 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=58.8
Q ss_pred HHHHHHh-cCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCC
Q 048733 182 KLIDLML-NGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGP 260 (887)
Q Consensus 182 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 260 (887)
.|...|. .+=....++.|+|.+|+||||||.+++.... ..-..++|++....++.. .++.++....
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~------ 114 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTD------ 114 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGG------
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHH------
Confidence 3444444 3322356899999999999999999886422 122357899888766653 2333332110
Q ss_pred CCCCCCCCCCCccccccCCHHHHHHHHHHHhCC-CceEEEEeccC
Q 048733 261 DRHAEGPLLPTPEEIHNMEETDLITTLRDHLKD-KSYMVVLDDVW 304 (887)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~ 304 (887)
.. .-....+.++....+....+. +.-+||+|.+-
T Consensus 115 ---------~l-~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 115 ---------SL-LVSQPDTGEQALEIADMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp ---------GC-EEECCSSHHHHHHHHHHHHTTTCCSEEEEECGG
T ss_pred ---------He-EEecCCCHHHHHHHHHHHHhcCCCCEEEEcChH
Confidence 00 001122456666666655543 56799999983
No 259
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.22 E-value=0.048 Score=57.31 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=43.8
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccC---------CC-----ceeEEEEeCCCCCHHHHHHHHHH
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKT---------HF-----SCRAWVTVGKEYNKNDLLRTIIK 247 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~v~~~~~~~~~~~~i~~ 247 (887)
.|..+|..+=....++.|+|.+|+|||+||.+++....... .. ..++|++....++..++.. +++
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~ 164 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAE 164 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHH
Confidence 34444433323457999999999999999998876422110 11 4678999888877766553 344
Q ss_pred HH
Q 048733 248 EF 249 (887)
Q Consensus 248 ~l 249 (887)
.+
T Consensus 165 ~~ 166 (322)
T 2i1q_A 165 HA 166 (322)
T ss_dssp HH
T ss_pred Hc
Confidence 44
No 260
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.09 E-value=0.038 Score=64.68 Aligned_cols=50 Identities=30% Similarity=0.385 Sum_probs=36.7
Q ss_pred cccCccccchhcHHHHHHHHhcC-----------CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 168 VEDDEVVGIESIKDKLIDLMLNG-----------RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+.-..+.|.++.+++|.+.+.-. -...+-|.++|++|.|||.||+.+++.
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 33456778888888877665421 122345779999999999999999994
No 261
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.01 E-value=0.055 Score=57.52 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=59.5
Q ss_pred HHHHHHh-cCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCC
Q 048733 182 KLIDLML-NGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGP 260 (887)
Q Consensus 182 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 260 (887)
.|...|. .+=....++.|.|.+|+||||||..++.... ..-..++|++....++.. .++.++....
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~------ 127 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTD------ 127 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGG------
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHH------
Confidence 4444444 2322345889999999999999998876422 122368899988776653 1333332110
Q ss_pred CCCCCCCCCCCccccccCCHHHHHHHHHHHhCC-CceEEEEeccC
Q 048733 261 DRHAEGPLLPTPEEIHNMEETDLITTLRDHLKD-KSYMVVLDDVW 304 (887)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~ 304 (887)
... -....+.+++.+.+....+. ..-+||+|.+-
T Consensus 128 ---------~l~-i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 128 ---------ELL-VSQPDNGEQALEIMELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp ---------GCE-EECCSSHHHHHHHHHHHHTTTCCSEEEEECTT
T ss_pred ---------Hce-eecCCcHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 000 01122456677777766654 45699999983
No 262
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.99 E-value=0.02 Score=63.69 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=36.1
Q ss_pred ccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 172 EVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|++..++.+...+..+. -|.|+|++|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 57899999988888777654 6789999999999999999984
No 263
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.86 E-value=0.049 Score=57.74 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCceEEEEeccCChhHHHHHHHhcCCCCCCcEEEEEccchhHHhh
Q 048733 282 DLITTLRDHLKDKSYMVVLDDVWKIDFWRDVEHALLDNKKCSRIIVTTRHMNVAKF 337 (887)
Q Consensus 282 ~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 337 (887)
.....+...|...+=+|++|.+-+.+.++.+..... .|..||+|+.....+..
T Consensus 184 ~~~~~La~aL~~~PdvillDEp~d~e~~~~~~~~~~---~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 184 GFSEALRSALREDPDIILVGEMRDLETIRLALTAAE---TGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp CHHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHH---TTCEEEEEESCSSHHHH
T ss_pred CHHHHHHHHhhhCcCEEecCCCCCHHHHHHHHHHHh---cCCEEEEEEccChHHHH
Confidence 345588899999999999999987777766554432 25568888887665543
No 264
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.82 E-value=0.056 Score=57.26 Aligned_cols=100 Identities=13% Similarity=0.059 Sum_probs=57.2
Q ss_pred HHHHHHh-cCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCC
Q 048733 182 KLIDLML-NGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGP 260 (887)
Q Consensus 182 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 260 (887)
.|...|. .+=....++.|.|.+|+||||||.+++.... ..-..++|++....++... +..++....
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~------ 116 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDID------ 116 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGG------
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChh------
Confidence 4444443 3322356899999999999999998886422 1223578999887776431 333332110
Q ss_pred CCCCCCCCCCCccccccCCHHHHHHHHHHHhC-CCceEEEEeccC
Q 048733 261 DRHAEGPLLPTPEEIHNMEETDLITTLRDHLK-DKSYMVVLDDVW 304 (887)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~ 304 (887)
... .....+.+++.+.++...+ .+.-+||+|.+-
T Consensus 117 ---------~l~-i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 117 ---------NLL-CSQPDTGEQALEICDALARSGAVDVIVVDSVA 151 (356)
T ss_dssp ---------GCE-EECCSSHHHHHHHHHHHHHHTCCSEEEEECGG
T ss_pred ---------hee-eeCCCCHHHHHHHHHHHHhccCCCEEEEcCHH
Confidence 000 0011234555555554442 455699999973
No 265
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.72 E-value=0.019 Score=61.66 Aligned_cols=46 Identities=30% Similarity=0.315 Sum_probs=36.1
Q ss_pred ccccchhcHHHHHHHHh-------------cCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 172 EVVGIESIKDKLIDLML-------------NGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|.+..++.+...+. ........+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999998888773 11113456889999999999999999984
No 266
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.71 E-value=0.028 Score=57.84 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=23.7
Q ss_pred CCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 190 GRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 190 ~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
......+|+|+|..|+||||||+.+...
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445789999999999999999988763
No 267
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.51 E-value=0.022 Score=54.71 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999873
No 268
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.26 E-value=0.02 Score=54.19 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.9
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+|.|+|++|+||||+|+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999873
No 269
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.21 E-value=0.12 Score=55.55 Aligned_cols=50 Identities=20% Similarity=0.144 Sum_probs=21.5
Q ss_pred ccceeEEeeccCCCCh-hhhcCCCcceeEEEecccCC---cCcCcCcccceeee
Q 048733 766 HLQYLSLRGNMKKLPD-WILKLKNLIGSRLILSGLTE---DPISWFPKLRKLVL 815 (887)
Q Consensus 766 ~L~~L~L~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~---~~~~~~~~L~~L~l 815 (887)
+|+.+.+..+...++. .+..+.+|+.+.+.++.+.. ..+..+.+|+.+.|
T Consensus 264 ~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 264 ALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred hhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 4555555443333222 23345555555555443322 22233444554444
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.17 E-value=0.023 Score=53.54 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=18.7
Q ss_pred EEEEEEccCCCCHHHHHHHH
Q 048733 195 SVVAVVGEGGLGKTTLAGKL 214 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v 214 (887)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 271
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.15 E-value=0.023 Score=55.04 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|+|++|+||||+|+.+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 272
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.06 E-value=0.025 Score=53.74 Aligned_cols=24 Identities=21% Similarity=0.583 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999873
No 273
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.04 E-value=0.027 Score=53.36 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEEEccCCCCHHHHHHHHhc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.03 E-value=0.025 Score=53.13 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.6
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999873
No 275
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.02 E-value=0.035 Score=52.38 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+++|+|+.|+||||+++.+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998763
No 276
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.01 E-value=0.1 Score=53.83 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|.+|+||||++..++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999988764
No 277
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.94 E-value=0.032 Score=54.06 Aligned_cols=24 Identities=42% Similarity=0.436 Sum_probs=21.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|+|++|+|||||++.+...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999874
No 278
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.89 E-value=0.15 Score=54.78 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=61.2
Q ss_pred ccceeEEeeccCCCC-hhhhcCCCcceeEEEecc--cCCcCcCcCcccceeeeCcCCCceeEEE-cCCCccCccEEEEcc
Q 048733 766 HLQYLSLRGNMKKLP-DWILKLKNLIGSRLILSG--LTEDPISWFPKLRKLVLLNFEAVKSVII-EKGAMPDIRELWIGP 841 (887)
Q Consensus 766 ~L~~L~L~~~~~~lp-~~~~~l~~L~~L~L~~~~--l~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~lp~L~~L~l~~ 841 (887)
+|+.+.+..+...+. ..+..+.+|+.+.+..+- +....+..+++|+.+.+.+. .++.+.. .+..+++|+.+.|..
T Consensus 241 ~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 241 ALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp SCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT
T ss_pred cceEEEcCCCccEeCccccceeehhccccccccceecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCc
Confidence 677777766554333 245567788888885431 22334456778888887643 2444532 345678899988854
Q ss_pred CCCCCcccc-ccccCCCCCEEEEE
Q 048733 842 CPLLMEIPI-GIDHLRNLELLTFH 864 (887)
Q Consensus 842 c~~l~~lp~-~~~~l~~L~~L~l~ 864 (887)
+ ++.++. .+.+|++|+++.+-
T Consensus 320 ~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 320 A--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp T--CCEECTTTTTTCTTCCCCCCC
T ss_pred c--ccEEHHHHhhCCCCCCEEEEC
Confidence 3 666644 67888999888763
No 279
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.86 E-value=0.033 Score=52.36 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=20.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997553
No 280
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.70 E-value=0.056 Score=56.53 Aligned_cols=43 Identities=33% Similarity=0.506 Sum_probs=31.4
Q ss_pred ccchhcHHHHHHHHhcC--CCCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 174 VGIESIKDKLIDLMLNG--RSKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 174 vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
|+.+.-.+++.+.+... .+....|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34455566666666432 33456789999999999999998877
No 281
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.69 E-value=0.3 Score=51.21 Aligned_cols=107 Identities=14% Similarity=0.109 Sum_probs=57.3
Q ss_pred EEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGPDRHAEGPLLPTPEE 274 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (887)
.+++|+|+.|+|||||++.+..- .. .-...+.+.-........ .. ..-.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~-~~~g~i~i~~~~e~~~~~------------~~---------------~~i~~ 221 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IP-KEERIISIEDTEEIVFKH------------HK---------------NYTQL 221 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SC-TTSCEEEEESSCCCCCSS------------CS---------------SEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--Cc-CCCcEEEECCeecccccc------------ch---------------hEEEE
Confidence 38999999999999999999874 21 123344443221111000 00 00000
Q ss_pred cccCCHHHHHHHHHHHhCCCceEEEEeccCChhHHHHHHHhcCCCCCCcEEEEEccchhHH
Q 048733 275 IHNMEETDLITTLRDHLKDKSYMVVLDDVWKIDFWRDVEHALLDNKKCSRIIVTTRHMNVA 335 (887)
Q Consensus 275 ~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 335 (887)
... ........+...|..++=+|++|.+-..+.++.+. .+..+ +.-+|+||......
T Consensus 222 ~~g-gg~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~-~~~~g--~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 222 FFG-GNITSADCLKSCLRMRPDRIILGELRSSEAYDFYN-VLCSG--HKGTLTTLHAGSSE 278 (330)
T ss_dssp ECB-TTBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHH-HHHTT--CCCEEEEEECSSHH
T ss_pred EeC-CChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHH-HHhcC--CCEEEEEEcccHHH
Confidence 000 11223455667778888899999997766665443 33322 22256666554443
No 282
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.63 E-value=0.027 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.7
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+|+|+|+.|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 283
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.60 E-value=0.2 Score=48.45 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+|.|.|++|+||||.|+.+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 284
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.59 E-value=0.032 Score=53.18 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+.|.|+|++|+||||+|+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999873
No 285
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.58 E-value=0.035 Score=54.14 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999874
No 286
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.57 E-value=0.037 Score=53.75 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||++.+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 358999999999999999998863
No 287
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.57 E-value=0.034 Score=53.84 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|+|+|+.|+|||||++.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 288
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.48 E-value=0.051 Score=54.43 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=27.6
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 179 IKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+.++...+.........|.|.|++|+||||+|+.+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 334444433333334678999999999999999999863
No 289
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.46 E-value=0.042 Score=52.67 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.40 E-value=0.04 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.8
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 291
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.39 E-value=0.03 Score=58.81 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=33.2
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCcc-CCCceeEEEEeCCCC
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLK-THFSCRAWVTVGKEY 236 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~~~ 236 (887)
++++.+..-. ....++|+|.+|+|||||++.+.+..... ..+. ++++-+++..
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 4556555432 24478999999999999999887742111 2233 3346666543
No 292
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.38 E-value=0.011 Score=56.44 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=19.2
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++.|+|+.|+||||++..++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999666653
No 293
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.36 E-value=0.045 Score=53.44 Aligned_cols=24 Identities=42% Similarity=0.481 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999877
No 294
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.36 E-value=0.43 Score=51.96 Aligned_cols=38 Identities=34% Similarity=0.400 Sum_probs=28.2
Q ss_pred HHHHHHHHhcC-------CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 180 KDKLIDLMLNG-------RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 180 ~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+++.+++... ....++|.|+|.+|+||||++..++..
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666432 134689999999999999999988764
No 295
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.35 E-value=0.073 Score=55.30 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=30.4
Q ss_pred ccchhcHHHHHHHHhcC--CCCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 174 VGIESIKDKLIDLMLNG--RSKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 174 vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
+|-...+..+...+... .....+|+|.|+.|+|||||++.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44444455554444443 34567999999999999999998876
No 296
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.33 E-value=0.043 Score=51.91 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988874
No 297
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.32 E-value=0.045 Score=52.36 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEEEccCCCCHHHHHHHHhc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 298
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.31 E-value=0.071 Score=54.82 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+|.|.|++|+||||+|+.+...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999873
No 299
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.29 E-value=0.039 Score=58.83 Aligned_cols=45 Identities=29% Similarity=0.320 Sum_probs=32.6
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+.++|.+..++.+........ ..-+.|+|++|+|||+||+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 458999886665544443222 123889999999999999999874
No 300
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.28 E-value=0.18 Score=52.08 Aligned_cols=25 Identities=48% Similarity=0.561 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...++.|+|.+|+||||++..++..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 3579999999999999999988874
No 301
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.24 E-value=0.052 Score=52.84 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
...+|+|+|++|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 302
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.22 E-value=0.2 Score=54.35 Aligned_cols=25 Identities=44% Similarity=0.481 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+|.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999888764
No 303
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.21 E-value=0.044 Score=55.28 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.8
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+|.|+|++|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999874
No 304
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.21 E-value=0.035 Score=53.84 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999874
No 305
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.15 E-value=0.059 Score=49.72 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+++|+|+.|.|||||++.++.-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3569999999999999999998873
No 306
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.10 E-value=0.043 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|.|+.|+||||+|+.+...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999873
No 307
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.10 E-value=0.046 Score=53.10 Aligned_cols=24 Identities=25% Similarity=0.619 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999873
No 308
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.09 E-value=0.038 Score=52.80 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=20.5
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999863
No 309
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.07 E-value=0.037 Score=53.73 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|+|++|+|||||++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999874
No 310
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.05 E-value=0.038 Score=53.40 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=20.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
.+.++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999876
No 311
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.04 E-value=0.039 Score=52.31 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|.|+|++|+||||+|+.+.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 357889999999999999999863
No 312
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.03 E-value=0.046 Score=52.29 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.8
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+|.|.|++|+||||+|+.+.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 313
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.00 E-value=0.18 Score=52.67 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=38.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
...++.|.|.+|+||||||..++.....++ ..++|++.. .+..++...++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 456899999999999999999886532222 567777765 55667777666553
No 314
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.98 E-value=0.13 Score=55.99 Aligned_cols=61 Identities=26% Similarity=0.416 Sum_probs=36.8
Q ss_pred HHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCC-HHHHHHHH
Q 048733 183 LIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYN-KNDLLRTI 245 (887)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i 245 (887)
.++.|..--. ...++|+|.+|+|||||++.+....... +-...+++-+++..+ ..+++.++
T Consensus 141 ~ID~L~pi~k-Gq~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l 202 (473)
T 1sky_E 141 VVDLLAPYIK-GGKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEM 202 (473)
T ss_dssp HHHHHSCEET-TCEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHH
T ss_pred HHHHHhhhcc-CCEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHh
Confidence 4555544211 2358899999999999999988752222 223456666666543 33444444
No 315
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.95 E-value=0.069 Score=55.86 Aligned_cols=26 Identities=46% Similarity=0.460 Sum_probs=22.7
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 192 SKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
....+++|+|+.|+||||+++.++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999988764
No 316
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.93 E-value=0.051 Score=51.99 Aligned_cols=24 Identities=21% Similarity=0.660 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++++|+|+.|+|||||++.+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999863
No 317
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.88 E-value=0.059 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.5
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 192 SKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999987
No 318
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.86 E-value=0.055 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
...|.|+|+.|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 319
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.84 E-value=0.27 Score=51.34 Aligned_cols=53 Identities=17% Similarity=0.148 Sum_probs=37.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
..++.|.|.+|+||||||..++..... .=..++|++. .-+..++...++....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 458999999999999999998875322 2234666665 4566777777766543
No 320
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.83 E-value=0.054 Score=52.73 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 348999999999999999998863
No 321
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.82 E-value=0.051 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5889999999999999999874
No 322
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.82 E-value=0.061 Score=55.94 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+|+|+|+.|+|||||++.+..-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 3569999999999999999988763
No 323
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.77 E-value=0.059 Score=51.73 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998763
No 324
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.77 E-value=0.09 Score=51.84 Aligned_cols=38 Identities=32% Similarity=0.353 Sum_probs=27.9
Q ss_pred hcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 178 SIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+..+.+...+... ....|.|+|.+|+|||||+..+...
T Consensus 24 ~~a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 24 RLADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344455544432 3678999999999999999999875
No 325
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.73 E-value=0.037 Score=52.53 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=19.5
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.|.|+|++|+|||||++.+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4779999999999999998763
No 326
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.72 E-value=0.067 Score=52.16 Aligned_cols=26 Identities=38% Similarity=0.514 Sum_probs=23.0
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 192 SKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...++|.|.|++|+||||.|+.+++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999874
No 327
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.70 E-value=0.056 Score=50.23 Aligned_cols=24 Identities=42% Similarity=0.351 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+++.|+|..|+|||||+..+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999998874
No 328
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.70 E-value=0.061 Score=54.52 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 329
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.69 E-value=0.054 Score=52.52 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.7
Q ss_pred EEEEEccCCCCHHHHHHHHhc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (887)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 330
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.68 E-value=0.076 Score=50.63 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 180 KDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+..+..++.+- +....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 45555665542 22346899999999999999988874
No 331
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.67 E-value=0.063 Score=52.14 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEEccCCCCHHHHHHHHhc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 332
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.66 E-value=0.065 Score=51.06 Aligned_cols=24 Identities=42% Similarity=0.437 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|.|++|+||||+++.++..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999999874
No 333
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.63 E-value=0.068 Score=52.89 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=30.9
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcccCc---cC-CCceeEEEEeCCCCCH
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNNEGL---KT-HFSCRAWVTVGKEYNK 238 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~v~~~~~~ 238 (887)
...+++|+|++|+|||||++.++..... .. .-...+|+.-...+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 4579999999999999999999762111 11 2334677775544443
No 334
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.63 E-value=0.056 Score=53.44 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEEEccCCCCHHHHHHHHhc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 335
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.63 E-value=0.058 Score=51.82 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|.|++|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 336
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.62 E-value=0.054 Score=51.06 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.|.|.|++|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 337
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.59 E-value=0.069 Score=51.70 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999863
No 338
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.57 E-value=0.086 Score=51.18 Aligned_cols=22 Identities=36% Similarity=0.317 Sum_probs=20.1
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+++|+|+.|+|||||++.++.-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999988753
No 339
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.56 E-value=0.065 Score=51.02 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
...|.|.|++|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 340
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.53 E-value=0.077 Score=53.50 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=28.3
Q ss_pred hcHHHHHHHHhcC---CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 178 SIKDKLIDLMLNG---RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 178 ~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+++...+..+ .....+|.|+|++|+||||+|+.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3344444444432 234578999999999999999999873
No 341
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.50 E-value=0.053 Score=53.29 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||++.+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999998873
No 342
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.47 E-value=0.075 Score=53.28 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+|+|.|+.|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999998876
No 343
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.45 E-value=0.065 Score=58.19 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=36.0
Q ss_pred CccccchhcHHHHHHHHhcC------------CCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNG------------RSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|.++.++.+...+... +...+-+.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 46889998888887666321 112356889999999999999999884
No 344
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.42 E-value=0.071 Score=51.97 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|.|++|+||||+|+.+.+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 345
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.42 E-value=0.046 Score=52.01 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEEccCCCCHHHHHHHHhc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (887)
+|.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 346
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.38 E-value=0.067 Score=52.46 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||++.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999998874
No 347
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.38 E-value=0.065 Score=53.78 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+|+|+|++|+|||||++.+++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999985
No 348
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.36 E-value=0.074 Score=55.34 Aligned_cols=24 Identities=42% Similarity=0.641 Sum_probs=20.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
+.+||+|.|-|||||||.+..+.-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 468999999999999998776554
No 349
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.26 E-value=0.12 Score=55.02 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 180 KDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++.+.+........+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555544456789999999999999999988763
No 350
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.23 E-value=0.054 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.5
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999873
No 351
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.22 E-value=0.25 Score=52.76 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=33.0
Q ss_pred HHHHHHHhCCCceEEEEeccCChhHHHHHHHhcCCCCCCcEEEEEccchhHHh
Q 048733 284 ITTLRDHLKDKSYMVVLDDVWKIDFWRDVEHALLDNKKCSRIIVTTRHMNVAK 336 (887)
Q Consensus 284 ~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 336 (887)
...++..+...+=+|++|.+-+.+......... ..|..|+.|+....+..
T Consensus 199 ~~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~ 248 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAID 248 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSHHH
T ss_pred HHHHHHHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchHHH
Confidence 457778887788899999997665544433332 23556788887655443
No 352
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.22 E-value=0.076 Score=54.93 Aligned_cols=24 Identities=50% Similarity=0.540 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|++|+|||||++.++.-
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 459999999999999999988763
No 353
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.22 E-value=0.075 Score=61.15 Aligned_cols=43 Identities=28% Similarity=0.395 Sum_probs=37.1
Q ss_pred CccccchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 171 DEVVGIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|.+..++.+...+..+. .+.|+|++|+||||||+.++.-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~----~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKR----HVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTC----CEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCCC----EEEEEeCCCCCHHHHHHHHhcc
Confidence 468999988888888777654 7899999999999999999884
No 354
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.21 E-value=0.077 Score=53.48 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+|+|.|+.|+||||+|+.+...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998773
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.16 E-value=0.075 Score=50.85 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|.|++|+||||+|+.+.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 356
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.10 E-value=0.071 Score=51.34 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+|+|.|++|+||||+|+.+.+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 357
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.07 E-value=0.14 Score=53.27 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...++.|+|.+|+||||++..++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999988764
No 358
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.05 E-value=0.052 Score=51.51 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=17.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|.|++|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999863
No 359
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.05 E-value=0.076 Score=49.54 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.9
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 360
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.02 E-value=0.093 Score=51.51 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=29.7
Q ss_pred cchhcHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 175 GIESIKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+.++..+++...+... ...+|.|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444455555554432 3679999999999999999998875
No 361
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.01 E-value=0.075 Score=51.36 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|.|++|+||||+|+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999873
No 362
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.98 E-value=0.24 Score=52.36 Aligned_cols=57 Identities=26% Similarity=0.347 Sum_probs=36.5
Q ss_pred HHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCC----ceeEEEEeCCCCCHH
Q 048733 183 LIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHF----SCRAWVTVGKEYNKN 239 (887)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~v~~~~~~~ 239 (887)
|...|..+=....++.|+|++|+|||||+..++......... ..++|++....+...
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 334444333346799999999999999999988742111111 245888876655433
No 363
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.97 E-value=0.14 Score=54.22 Aligned_cols=25 Identities=48% Similarity=0.634 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+++|+|+.|+||||+++.++.-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999988764
No 364
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.93 E-value=0.082 Score=53.22 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 365
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.93 E-value=0.23 Score=53.46 Aligned_cols=69 Identities=19% Similarity=0.194 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCc----cCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 181 DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGL----KTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
..|..+|..+=....++.|+|++|+|||||+..++-.... .+.-..++|++....++...+ ..+++.++
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 3444445443233569999999999999999976532111 112345788887766665443 33555443
No 366
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.92 E-value=0.49 Score=48.62 Aligned_cols=24 Identities=50% Similarity=0.558 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++.++|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999988764
No 367
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.90 E-value=0.27 Score=53.26 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.++|.+|+||||++..++..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHH
Confidence 579999999999999998888763
No 368
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.82 E-value=0.45 Score=49.97 Aligned_cols=36 Identities=31% Similarity=0.313 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 181 DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-++++.+..-. ...-++|+|.+|+|||+|+..+.+.
T Consensus 163 iraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 163 TRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred chhhhhccccc-CCceEEEecCCCCChhHHHHHHHHH
Confidence 46677776532 2346789999999999999988884
No 369
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.82 E-value=0.082 Score=50.67 Aligned_cols=22 Identities=45% Similarity=0.611 Sum_probs=20.1
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 370
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.80 E-value=0.097 Score=54.13 Aligned_cols=24 Identities=46% Similarity=0.616 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+||||+++.++.-
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 569999999999999999988763
No 371
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.80 E-value=0.087 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999976
No 372
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.80 E-value=0.76 Score=50.43 Aligned_cols=67 Identities=16% Similarity=0.111 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHh
Q 048733 180 KDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFH 250 (887)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~ 250 (887)
...|.+.+ .+=....++.|.|.+|+||||||..++...... .-..++|++.. -+..++...++....
T Consensus 187 ~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 187 FKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSEA 253 (444)
T ss_dssp CHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHHc
Confidence 34455555 443345689999999999999999988752221 12346777654 456667766665443
No 373
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.79 E-value=0.097 Score=49.46 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|+|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998773
No 374
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.76 E-value=0.093 Score=50.19 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
+-.+|+|+|+.|+||||+|+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 375
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.72 E-value=0.084 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...|.|.|++|+||||+|+.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999873
No 376
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.71 E-value=2.9 Score=55.73 Aligned_cols=208 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred EEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhcc-----------CCCCCCCCCCCC
Q 048733 197 VAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLS-----------KHGRDGPDRHAE 265 (887)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----------~~~~~~~~~~~~ 265 (887)
|.++|++|+|||++|+.+.. ...+ ...+.++.+...+...+...+-..+.... .
T Consensus 1270 vLL~GPpGtGKT~la~~~l~--~~~~--~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~----------- 1334 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALR--NSSL--YDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD----------- 1334 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHH--SCSS--CEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS-----------
T ss_pred EEEECCCCCCHHHHHHHHHh--cCCC--CceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC-----------
Q ss_pred CCCCCCccccccCCHHHHHHHHHHHhCCCceEEEEeccCCh--------hHHHHHHHhcCCCC------------CCcEE
Q 048733 266 GPLLPTPEEIHNMEETDLITTLRDHLKDKSYMVVLDDVWKI--------DFWRDVEHALLDNK------------KCSRI 325 (887)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--------~~~~~l~~~l~~~~------------~gs~i 325 (887)
+++.++.+||+... ...+-++..+..++ .+..+
T Consensus 1335 ---------------------------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~l 1387 (2695)
T 4akg_A 1335 ---------------------------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHI 1387 (2695)
T ss_dssp ---------------------------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEE
T ss_pred ---------------------------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEE
Q ss_pred EEEccch------hHHhhhccCCCcceeecCCCChhhHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhCCCchHHHHH
Q 048733 326 IVTTRHM------NVAKFCKLSSSVRIHELETLPPDEAWKLFCRKAFGPSSGGCCPSELKELSQDILAKCGGLPLAIVAV 399 (887)
Q Consensus 326 ivTtR~~------~v~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 399 (887)
|-++-.. .+.......- ..+.++..+.++-..+|.....+. ....++...++..|++..
T Consensus 1388 IaA~Npp~~gGR~~l~~rllRrf--~vi~i~~P~~~~l~~I~~~il~~~---l~~~~~v~~~~~~lv~at---------- 1452 (2695)
T 4akg_A 1388 VGACNPPTDPGRIPMSERFTRHA--AILYLGYPSGKSLSQIYEIYYKAI---FKLVPEFRSYTEPFARAS---------- 1452 (2695)
T ss_dssp EEEECCTTSTTCCCCCHHHHTTE--EEEECCCCTTTHHHHHHHHHHHHH---TTSSGGGGGGHHHHHHHH----------
T ss_pred EEecCCCccCCCccCChhhhhee--eEEEeCCCCHHHHHHHHHHHHHHH---hccCHHHHHHHHHHHHHH----------
Q ss_pred hhhhcCCCCCHHHHHHHHHHhccccCCCCCccchHHHHhhcccCCChhhHHHHhhhccc-CCCcccChhHHHHHHHHcCc
Q 048733 400 GGLLSTKNRIVSEWKKLFDRLGSMLGSDPHLKDCNRVLSEGYYDLPHHLKSCLLYFGLF-PESCKINRGRLIRLWIAEGL 478 (887)
Q Consensus 400 ~~~l~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~~l~~sy~~Lp~~~k~cf~~~s~f-p~~~~i~~~~li~~w~a~g~ 478 (887)
.+-|..+...+....... |-.=+.++-+.|.-+... ++...-+...++++|
T Consensus 1453 ----------i~~y~~v~~~~~~~~k~H-------------Y~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw----- 1504 (2695)
T 4akg_A 1453 ----------VHLYNECKARYSTGLQSH-------------YLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLW----- 1504 (2695)
T ss_dssp ----------HHHHHHHHHHSCTTTCTT-------------CCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHH-----
T ss_pred ----------HHHHHHHHHHcCCccCCC-------------cccCHHHHHHHHHHHHhcCchhhhccHHHHHHHH-----
Q ss_pred cccCCCCCHHHHHHHHHHHHhhc
Q 048733 479 VQYSKRFTSEQVAAEYLDELIDR 501 (887)
Q Consensus 479 i~~~~~~~~e~~~~~~l~~L~~~ 501 (887)
+.++.....+|
T Consensus 1505 ------------~HE~~Rvf~DR 1515 (2695)
T 4akg_A 1505 ------------AYEAWRIFADR 1515 (2695)
T ss_dssp ------------HHHHHHHHTTT
T ss_pred ------------HHHHHHHHHHh
No 377
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.63 E-value=0.078 Score=50.58 Aligned_cols=22 Identities=41% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988764
No 378
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.61 E-value=0.09 Score=51.33 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 379
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.61 E-value=0.086 Score=51.36 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 380
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.60 E-value=0.47 Score=51.67 Aligned_cols=64 Identities=30% Similarity=0.436 Sum_probs=42.9
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCC-HHHHHHHHHH
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYN-KNDLLRTIIK 247 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~~ 247 (887)
+.++.|..-. ...-++|+|.+|+|||+|+..+.+.. .+.+-+.++++-+.+... ..+++.++..
T Consensus 154 rvID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 154 KVVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp TTHHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred eEeeeecccc-cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 3556665432 23458899999999999999988852 223446778888887654 5555555543
No 381
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.53 E-value=0.11 Score=50.69 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|.|+.|+||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998873
No 382
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.50 E-value=0.16 Score=51.38 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+++|+|+.|+|||||.+.++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 383
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.48 E-value=0.094 Score=52.64 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+++|+|++|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 45999999999999999998873
No 384
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.46 E-value=0.096 Score=52.13 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEEEEccCCCCHHHHHHHHhc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
.+++|+|+.|+|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 385
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.45 E-value=0.088 Score=52.05 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...|.|.|++|+||||+|+.+.+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999873
No 386
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.44 E-value=0.094 Score=51.63 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+++|+|+.|+|||||.+.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999999876
No 387
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.37 E-value=0.61 Score=50.58 Aligned_cols=64 Identities=33% Similarity=0.487 Sum_probs=42.2
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCC-HHHHHHHHHH
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYN-KNDLLRTIIK 247 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i~~ 247 (887)
+.++.|..-. ...-++|+|.+|+|||+|+..+.+.. .+.+-+.++++-+.+... +.++++++..
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIE 206 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhh
Confidence 4566665421 23468899999999999999988742 223345677777776543 4555555554
No 388
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.36 E-value=0.1 Score=51.83 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999873
No 389
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.35 E-value=0.16 Score=51.64 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+++|+|+.|+|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 34899999999999999999876
No 390
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.29 E-value=0.83 Score=45.15 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHh
Q 048733 180 KDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLF 215 (887)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~ 215 (887)
.++++..+..+. .+.|.|..|+||||+...+.
T Consensus 66 q~~~i~~i~~g~----~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 66 ESEILEAISQNS----VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHHHHCS----EEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCC----EEEEEeCCCCCcHHhHHHHH
Confidence 445555555543 78999999999998665443
No 391
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.26 E-value=0.38 Score=51.99 Aligned_cols=24 Identities=46% Similarity=0.444 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++.|+|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988764
No 392
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.24 E-value=0.1 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=20.1
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 393
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.20 E-value=0.12 Score=53.77 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
...+|+|+|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999887
No 394
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.18 E-value=0.1 Score=50.41 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999874
No 395
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.18 E-value=0.1 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.5
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 396
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.16 E-value=0.058 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.6
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988763
No 397
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.15 E-value=0.13 Score=51.44 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+++|+|+.|+|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999876
No 398
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.11 E-value=0.091 Score=51.73 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...|.|.|++|+||||+|+.+++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999873
No 399
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.07 E-value=0.053 Score=52.99 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 400
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.06 E-value=0.075 Score=52.70 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=16.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHh-c
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLF-N 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~-~ 216 (887)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998 5
No 401
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.05 E-value=0.11 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.1
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+|+|.|+.|+||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999874
No 402
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.03 E-value=0.11 Score=48.70 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+++.|+|..|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 468999999999999999998874
No 403
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.02 E-value=0.13 Score=52.57 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999873
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.01 E-value=0.13 Score=50.39 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 405
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.01 E-value=0.12 Score=52.27 Aligned_cols=24 Identities=38% Similarity=0.408 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||++.++.-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 458999999999999999998763
No 406
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.96 E-value=0.11 Score=50.79 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 407
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.86 E-value=0.4 Score=61.50 Aligned_cols=100 Identities=13% Similarity=0.059 Sum_probs=60.1
Q ss_pred HHHHHHh-cCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccCCCCCCC
Q 048733 182 KLIDLML-NGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSKHGRDGP 260 (887)
Q Consensus 182 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 260 (887)
.|..+|. .+=...+++.|+|++|+|||+||.++..... .+=..++|+++...++... ++.++.+..
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~------ 1480 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDID------ 1480 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTT------
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCch------
Confidence 3555555 3323456899999999999999999887422 2223567888877776654 344432111
Q ss_pred CCCCCCCCCCCccccccCCHHHHHHHHHHHhC-CCceEEEEeccC
Q 048733 261 DRHAEGPLLPTPEEIHNMEETDLITTLRDHLK-DKSYMVVLDDVW 304 (887)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~ 304 (887)
... .....+.++..+.++...+ .+.-+||+|.+.
T Consensus 1481 ---------~l~-v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1481 ---------NLL-CSQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp ---------TCE-EECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred ---------hce-eecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 000 0011133455666665543 467899999984
No 408
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.85 E-value=0.18 Score=53.80 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 181 DKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+.+-+.-.-....+++|+|++|+|||||++.++.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 334444433333456999999999999999999987
No 409
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.84 E-value=0.14 Score=53.06 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.8
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|.|+|+.|+||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999883
No 410
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.80 E-value=0.098 Score=52.36 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.4
Q ss_pred EEEEEEccCCCCHHHHHHHHhc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 411
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.76 E-value=0.13 Score=51.78 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||.+.++.-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999763
No 412
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.70 E-value=0.12 Score=52.27 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+++|+|+.|+|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999986
No 413
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.69 E-value=0.12 Score=51.37 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||.+.++.-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999763
No 414
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.66 E-value=0.22 Score=49.81 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-+..|+....+....|.++|++|.|||.+|..+++.
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 355555554244567999999999999999999883
No 415
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.64 E-value=0.11 Score=50.66 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.7
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+++|+|+.|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998763
No 416
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.62 E-value=0.13 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999876
No 417
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.60 E-value=0.13 Score=50.84 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|.|||||.+.++.-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 418
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.60 E-value=0.14 Score=52.02 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998873
No 419
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.60 E-value=0.13 Score=51.83 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||++.++.-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999763
No 420
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.55 E-value=0.13 Score=52.14 Aligned_cols=24 Identities=46% Similarity=0.552 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||++.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999763
No 421
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.54 E-value=0.13 Score=50.65 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+|.|.|++|+||||+|+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999863
No 422
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.50 E-value=0.14 Score=52.49 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|.|+|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 358999999999999999999873
No 423
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.50 E-value=0.16 Score=51.16 Aligned_cols=51 Identities=10% Similarity=0.161 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCCceEEEEeccCChhHHHHHHHhcCCCCCCcEEEEEccchhHHh
Q 048733 283 LITTLRDHLKDKSYMVVLDDVWKIDFWRDVEHALLDNKKCSRIIVTTRHMNVAK 336 (887)
Q Consensus 283 l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 336 (887)
+...+...|..++=+|++|..-+.+....+.... ..|.-|++||.......
T Consensus 87 l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 87 FADALRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred HHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 3456666676677899999997555444433332 23556888887765443
No 424
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.48 E-value=0.13 Score=49.82 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=20.0
Q ss_pred EEEEEccCCCCHHHHHHHHhc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (887)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 425
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.47 E-value=0.14 Score=51.45 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+++|+|+.|+|||||++.++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999987
No 426
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.46 E-value=0.13 Score=51.35 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||++.++.-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999763
No 427
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.39 E-value=0.14 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.0
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
++|.|+|+.|+||||||..++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 428
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.37 E-value=0.13 Score=48.68 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.6
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3779999999999999999873
No 429
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.31 E-value=0.15 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999998763
No 430
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.27 E-value=0.95 Score=50.62 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=37.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHH
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEF 249 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l 249 (887)
...++.|.|.+|+||||||.+++.+.... +=..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 45689999999999999999988753222 123567776643 4667776665544
No 431
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.25 E-value=0.14 Score=48.91 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.-.|+|+|.+|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999875
No 432
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.24 E-value=0.12 Score=50.57 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.5
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999874
No 433
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.20 E-value=0.15 Score=50.88 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=27.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCC
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGK 234 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 234 (887)
..++.|.|++|+||||||..++.... ..-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 45899999999999999888765311 1123466776543
No 434
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.18 E-value=0.15 Score=51.07 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||.+.++.-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 348999999999999999998863
No 435
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=90.17 E-value=1.2 Score=53.17 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=19.5
Q ss_pred cEEEEEEccCCCCHHHHHHHH
Q 048733 194 RSVVAVVGEGGLGKTTLAGKL 214 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v 214 (887)
..+++|+|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 469999999999999999988
No 436
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.12 E-value=0.22 Score=51.18 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
...+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 356899999999999999999876
No 437
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.06 E-value=0.18 Score=46.75 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.6
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 438
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.04 E-value=0.15 Score=50.20 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 439
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.02 E-value=0.27 Score=48.52 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
....|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999885
No 440
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.96 E-value=0.15 Score=51.12 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||.+.++.-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999874
No 441
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.95 E-value=0.15 Score=51.90 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||.+.++.-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999863
No 442
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.92 E-value=0.17 Score=47.89 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.+.|.|.|+.|+||||||..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999874
No 443
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.92 E-value=0.15 Score=49.71 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.6
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 444
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.91 E-value=0.18 Score=55.20 Aligned_cols=25 Identities=44% Similarity=0.599 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+++|+|.+|+|||||++.++.-
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4679999999999999999998873
No 445
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.90 E-value=0.15 Score=55.04 Aligned_cols=34 Identities=32% Similarity=0.352 Sum_probs=25.6
Q ss_pred HHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 183 LIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
+.+.|........+++|+|..|+|||||.+.+..
T Consensus 58 i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 58 ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3344433323456999999999999999999987
No 446
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.85 E-value=0.69 Score=50.59 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=40.4
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHH
Q 048733 179 IKDKLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKE 248 (887)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~ 248 (887)
-...|.+.+ .+=....++.|.|.+|+||||||..++.+...+ -..++|++.. -+..++...++..
T Consensus 183 G~~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 183 GFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SCHHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred CcHHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHH
Confidence 344455555 332345689999999999999999988753222 2346666554 3444555555543
No 447
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.84 E-value=0.16 Score=50.19 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3579999999999999999998873
No 448
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.83 E-value=0.17 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|.|+|+.|+||||||..++..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 468999999999999999999874
No 449
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.69 E-value=0.17 Score=50.13 Aligned_cols=23 Identities=39% Similarity=0.445 Sum_probs=20.8
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..|.|.|+.|+||||+|+.+.+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999874
No 450
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.69 E-value=0.16 Score=48.93 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.6
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-.|+|+|.+|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999875
No 451
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.64 E-value=0.19 Score=50.72 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++.+.|.||+||||++..+...
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHH
Confidence 578999999999999999999854
No 452
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.51 E-value=0.3 Score=51.32 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=25.8
Q ss_pred HHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 183 LIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
+.+-+.-.-....+++|+|.+|+|||||.+.+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4444443334467999999999999999999875
No 453
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.48 E-value=0.21 Score=45.78 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999875
No 454
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.38 E-value=0.18 Score=52.17 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEEEccCCCCHHHHHHHHhc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 455
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.30 E-value=0.19 Score=47.89 Aligned_cols=68 Identities=19% Similarity=0.135 Sum_probs=38.6
Q ss_pred cccCCCceeEEEEecCC-CCC-----CCccccccccccceeecCCCceeeecCccccccchhhhcccccCeeeeccc
Q 048733 592 SCIANFKLMKVLDLEDS-PIN-----YLPEGVGNLFNLHLLNARNTKILDLAHTFVSELPEEIRNLKKLRSLIVFHY 662 (887)
Q Consensus 592 ~~~~~~~~Lr~L~L~~~-~l~-----~lp~~i~~L~~L~~L~L~~~~~Ldl~~~~l~~lp~~i~~l~~L~~L~l~~~ 662 (887)
..+.+-+.|+.|+|+++ .|. .+-+.+..-.+|+.|+|++|. +.+-....+...+..-+.|++|+|++|
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~---igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA---ISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC---CBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC---CChHHHHHHHHHHhcCCccCeEecCCC
Confidence 34455667778888775 554 233445556667777776654 111122244445555566777777765
No 456
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.25 E-value=0.26 Score=46.51 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...-|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999874
No 457
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.24 E-value=0.19 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|.+|+|||||+..++..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 458999999999999999998874
No 458
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.20 E-value=0.19 Score=51.01 Aligned_cols=22 Identities=50% Similarity=0.869 Sum_probs=19.9
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|+|+.|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998874
No 459
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.03 E-value=0.2 Score=54.50 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999874
No 460
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.02 E-value=0.2 Score=50.50 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.4
Q ss_pred EEEEEEccCCCCHHHHHHHHhc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 461
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.99 E-value=0.2 Score=51.26 Aligned_cols=23 Identities=43% Similarity=0.518 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..++.|+|++|+|||||+..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999998875
No 462
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.95 E-value=0.21 Score=51.19 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|+.|+|||||.+.++.-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 458999999999999999999873
No 463
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.95 E-value=0.2 Score=46.09 Aligned_cols=22 Identities=45% Similarity=0.782 Sum_probs=19.7
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 464
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.93 E-value=0.22 Score=54.22 Aligned_cols=38 Identities=37% Similarity=0.492 Sum_probs=27.5
Q ss_pred HHHHHHHHhcC------C-CCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 180 KDKLIDLMLNG------R-SKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 180 ~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|.+++... . ....+|.|+|.+|+||||++..++..
T Consensus 78 ~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 78 YEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp HHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34555555432 1 23468999999999999999988774
No 465
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.87 E-value=0.12 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=18.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+|+|.|..|+||||+|+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 466
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.86 E-value=0.72 Score=59.24 Aligned_cols=106 Identities=13% Similarity=0.039 Sum_probs=64.4
Q ss_pred chhcHHHHHHHHh-cCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCCHHHHHHHHHHHHhhccC
Q 048733 176 IESIKDKLIDLML-NGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYNKNDLLRTIIKEFHRLSK 254 (887)
Q Consensus 176 r~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 254 (887)
...-...|...|. .+=....++.|+|++|+||||||.+++.... ..-..++|++....++... ++.++.+..
T Consensus 364 I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~ 436 (2050)
T 3cmu_A 364 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDID 436 (2050)
T ss_dssp ECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTT
T ss_pred eeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHH
Confidence 3334455666665 3323456999999999999999999987532 2223578888877776531 344432211
Q ss_pred CCCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHh-CCCceEEEEeccC
Q 048733 255 HGRDGPDRHAEGPLLPTPEEIHNMEETDLITTLRDHL-KDKSYMVVLDDVW 304 (887)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~ 304 (887)
..- -....+.+++.+.++... +.+.-+||+|.+.
T Consensus 437 ---------------~L~-I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 437 ---------------NLL-CSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp ---------------TCE-EECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred ---------------HeE-EeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 000 012235567777776555 3456799999984
No 467
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=88.86 E-value=0.4 Score=51.63 Aligned_cols=65 Identities=12% Similarity=0.185 Sum_probs=38.5
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCcc--CCCceeEEEEeCCCC-CHHHHHHHHHH
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLK--THFSCRAWVTVGKEY-NKNDLLRTIIK 247 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~v~~~~-~~~~~~~~i~~ 247 (887)
+.++.|..-. ...-++|.|..|+|||+|+..+++..... +.--.++++-+.+.. .+.+++.++.+
T Consensus 140 raID~l~pig-rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~ 207 (465)
T 3vr4_D 140 SAIDHLNTLV-RGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQ 207 (465)
T ss_dssp HHHHTTSCCB-TTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eEEecccccc-cCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhh
Confidence 3444444321 12347899999999999999999864431 111145566666543 35555555443
No 468
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.83 E-value=0.24 Score=50.98 Aligned_cols=24 Identities=46% Similarity=0.444 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988874
No 469
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.77 E-value=0.22 Score=46.38 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
--|+|+|.+|+|||||+..+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35889999999999999998875
No 470
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.72 E-value=0.21 Score=46.10 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=20.2
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
--|.|+|.+|+|||||+..+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999875
No 471
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.71 E-value=0.46 Score=41.96 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=11.2
Q ss_pred cccccchhh-hcccccCeeeeccc
Q 048733 640 FVSELPEEI-RNLKKLRSLIVFHY 662 (887)
Q Consensus 640 ~l~~lp~~i-~~l~~L~~L~l~~~ 662 (887)
.|..+|..+ ..+++|+.|+|.+|
T Consensus 42 ~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 42 NLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred cCCccChhhhhhccccCEEEecCC
Confidence 355554432 34555555555554
No 472
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.70 E-value=0.16 Score=52.46 Aligned_cols=23 Identities=39% Similarity=0.640 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+++|+|+.|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 45899999999999999999876
No 473
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.68 E-value=0.26 Score=46.66 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..|+|+|.+|+|||||+..+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999874
No 474
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.55 E-value=0.37 Score=53.40 Aligned_cols=38 Identities=37% Similarity=0.443 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCC-------CCcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 180 KDKLIDLMLNGR-------SKRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 180 ~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|.+++.... ....+|.|+|.+|+||||++..++..
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445556554421 24679999999999999999988863
No 475
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.51 E-value=0.38 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.1
Q ss_pred CCcEEEEEEccCCCCHHHHHHHHhc
Q 048733 192 SKRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
....+|+|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999999998875
No 476
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.44 E-value=0.24 Score=46.73 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.3
Q ss_pred EEEEEccCCCCHHHHHHHHhc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (887)
+.+|+|+.|.|||||+..++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998865
No 477
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.37 E-value=0.57 Score=45.47 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...|.|.|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 478
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.33 E-value=0.54 Score=51.29 Aligned_cols=60 Identities=20% Similarity=0.343 Sum_probs=37.0
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHH-HHHhcccCccCCCc-eeEEEEeCCCCC-HHHHHHHHH
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLA-GKLFNNEGLKTHFS-CRAWVTVGKEYN-KNDLLRTII 246 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~v~~~~~-~~~~~~~i~ 246 (887)
+.++.|..-. ...-++|+|.+|+|||+|| ..+.+.. .-+ .++++-+++..+ +.++..++.
T Consensus 164 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~ 226 (515)
T 2r9v_A 164 KAIDSMIPIG-RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLR 226 (515)
T ss_dssp HHHHHHSCEE-TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHH
T ss_pred cccccccccc-cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHH
Confidence 4556555421 1235789999999999995 5777742 234 346677776543 445555554
No 479
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.33 E-value=0.24 Score=49.11 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
...+|+|+|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999886
No 480
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.33 E-value=0.24 Score=46.32 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.5
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999875
No 481
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=88.28 E-value=0.56 Score=49.83 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|+|+|.+|+|||||...+...
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 557999999999999999999875
No 482
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.26 E-value=0.23 Score=47.11 Aligned_cols=22 Identities=45% Similarity=0.782 Sum_probs=19.9
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-|.|+|.+|+|||||+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5779999999999999999875
No 483
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.21 E-value=0.26 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+++|+|+.|.|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 45899999999999999999876
No 484
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.21 E-value=0.26 Score=52.46 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|.|.|+.|+||||||..++..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHH
Confidence 358999999999999999999873
No 485
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.20 E-value=0.23 Score=45.83 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.2
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-|.|+|.+|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 3779999999999999998764
No 486
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.16 E-value=0.38 Score=44.88 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...|+|+|.+|+|||||+..+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999999775
No 487
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.12 E-value=0.45 Score=46.98 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=26.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEE
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVT 231 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 231 (887)
...|.|.|+.|+||||+++.+.+... ..++..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeec
Confidence 45899999999999999999987532 23444344443
No 488
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.11 E-value=0.16 Score=58.11 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=30.4
Q ss_pred ccccchhcHHHHHHHHhcCCC---------CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 172 EVVGIESIKDKLIDLMLNGRS---------KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.++|.+..+..+.-.+..+.. ...-|.++|++|+|||+||+.+++.
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 456766655555444433310 0014789999999999999999874
No 489
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.09 E-value=1.1 Score=49.44 Aligned_cols=59 Identities=24% Similarity=0.346 Sum_probs=40.2
Q ss_pred HHHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCccCCCceeEEEEeCCCCC-HHHHHHHH
Q 048733 182 KLIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLKTHFSCRAWVTVGKEYN-KNDLLRTI 245 (887)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~i 245 (887)
++++.|..-. ...-++|.|..|+|||+|++++.+.. +-+.++++-+++..+ +.+++.++
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4566665421 23468899999999999999998742 234677888887665 44454443
No 490
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.07 E-value=0.26 Score=45.72 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=19.7
Q ss_pred EEEEEccCCCCHHHHHHHHhcc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
-|.|+|.+|+|||||+..+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 491
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=88.06 E-value=0.2 Score=53.94 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=37.4
Q ss_pred HHHHHhcCCCCcEEEEEEccCCCCHHHHHHHHhcccCcc--------CCCc-eeEEEEeCCCC-CHHHHHHHHH
Q 048733 183 LIDLMLNGRSKRSVVAVVGEGGLGKTTLAGKLFNNEGLK--------THFS-CRAWVTVGKEY-NKNDLLRTII 246 (887)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~v~~~~-~~~~~~~~i~ 246 (887)
.++.|..-. ...-++|.|.+|+|||+|+..+++..... .+-+ .++++-+.+.. .+.++..++.
T Consensus 137 aID~l~pig-rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~ 209 (464)
T 3gqb_B 137 TIDVMNTLV-RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFE 209 (464)
T ss_dssp HHHTTSCCB-TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHH
T ss_pred eeecccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhh
Confidence 444444321 12357899999999999999999864431 1111 45566666543 3445555443
No 492
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.05 E-value=0.24 Score=47.12 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...|+|+|.+|+|||||+..+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999999875
No 493
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.05 E-value=0.26 Score=45.63 Aligned_cols=21 Identities=52% Similarity=0.782 Sum_probs=18.9
Q ss_pred EEEEEccCCCCHHHHHHHHhc
Q 048733 196 VVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (887)
-|.|+|.+|+|||||+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999865
No 494
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.99 E-value=0.25 Score=45.48 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=20.2
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
.-|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999875
No 495
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=87.98 E-value=2 Score=41.47 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
--|.|+|.+|+|||||+..+.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45789999999999999999875
No 496
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.93 E-value=0.33 Score=44.86 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
--|.|+|.+|+|||||+..+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999998865
No 497
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.92 E-value=0.27 Score=51.81 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCCHHHHHHHHhc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFN 216 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (887)
..+++|+|+.|.|||||.+.++-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999999986
No 498
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.90 E-value=0.29 Score=50.78 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCCHHHHHHHHhcc
Q 048733 193 KRSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
..++|+|+|-||+||||+|..++.-
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHHH
Confidence 4689999999999999998877763
No 499
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.77 E-value=0.3 Score=48.67 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCCHHHHHHHHhcc
Q 048733 194 RSVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
...|.|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999874
No 500
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.74 E-value=0.26 Score=46.56 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.2
Q ss_pred EEEEEEccCCCCHHHHHHHHhcc
Q 048733 195 SVVAVVGEGGLGKTTLAGKLFNN 217 (887)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (887)
--|.|+|.+|+|||||+..+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45779999999999999999875
Done!