Your job contains 1 sequence.
>048735
RRDLGDHGDDLRWRFPPPENNSRHPVTTSQQSHVASQNLHLIPIYQKPNQQDYHVENPSL
QNPTTQDQLSGHLHYSNYPYDKSLAMEPSTCRCRTPESGLSRPSQFAAPRPPLSQYLPYP
IPLNQAQYSFINSLPTSFPLENHETIDLQSGFDLQSGFEGLNIDGLGLPRPNNLTVQRNL
VAATNRYATTNNASPSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARARHHHHRTSYSSI
EELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLI
GVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVS
ALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIP
LAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLG
KCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQT
LYDLVVDNSPFLQSHMYGKNVLAKVRGNKNRFHNRVAMW
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 048735
(579 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2167111 - symbol:PUM12 "pumilio 12" species:37... 682 4.0e-67 1
TAIR|locus:2015036 - symbol:PUM8 "pumilio 8" species:3702... 553 1.9e-53 1
TAIR|locus:2194699 - symbol:PUM7 "pumilio 7" species:3702... 552 2.4e-53 1
DICTYBASE|DDB_G0289987 - symbol:DDB_G0289987 "Pumilio hom... 534 6.6e-52 2
TAIR|locus:2138258 - symbol:PUM11 "pumilio 11" species:37... 527 1.1e-50 1
TAIR|locus:2011349 - symbol:PUM9 "pumilio 9" species:3702... 507 1.1e-50 2
ASPGD|ASPL0000057098 - symbol:AN10071 species:162425 "Eme... 505 2.3e-48 1
POMBASE|SPAC4G8.03c - symbol:SPAC4G8.03c "RNA-binding pro... 446 2.6e-44 2
TAIR|locus:2011360 - symbol:PUM10 "pumilio 10" species:37... 465 3.9e-44 1
POMBASE|SPAC6G9.14 - symbol:SPAC6G9.14 "RNA-binding prote... 442 2.1e-43 2
TAIR|locus:2167786 - symbol:PUM14 "pumilio 14" species:37... 423 1.4e-42 2
SGD|S000002982 - symbol:PUF4 "Member of the PUF protein f... 429 2.3e-39 1
TAIR|locus:2167771 - symbol:PUM13 "pumilio 13" species:37... 397 6.3e-37 1
TAIR|locus:2133534 - symbol:PUM15 "pumilio 15" species:37... 386 9.2e-36 1
DICTYBASE|DDB_G0279557 - symbol:DDB_G0279557 "pumilio RNA... 381 8.9e-33 1
DICTYBASE|DDB_G0279735 - symbol:pufA "RNA binding protein... 359 6.5e-31 2
UNIPROTKB|E2RT57 - symbol:PUM2 "Uncharacterized protein" ... 368 1.2e-30 2
UNIPROTKB|F1SCU6 - symbol:PUM2 "Uncharacterized protein" ... 368 1.2e-30 2
UNIPROTKB|F1N2B8 - symbol:PUM2 "Uncharacterized protein" ... 368 1.2e-30 2
UNIPROTKB|B4E2B6 - symbol:PUM2 "Pumilio homolog 2" specie... 368 1.6e-30 2
UNIPROTKB|F1NV23 - symbol:PUM2 "Uncharacterized protein" ... 364 2.0e-30 1
UNIPROTKB|E1BWC0 - symbol:PUM2 "Uncharacterized protein" ... 364 2.0e-30 1
TAIR|locus:2076324 - symbol:PUM4 "pumilio 4" species:3702... 363 2.3e-30 1
RGD|1311024 - symbol:Pum2 "pumilio homolog 2 (Drosophila)... 361 3.2e-30 1
FB|FBgn0003165 - symbol:pum "pumilio" species:7227 "Droso... 345 8.1e-30 3
UNIPROTKB|Q2VB19 - symbol:PUM1 "Pumilio homolog 1" specie... 359 9.3e-30 1
UNIPROTKB|H0YDK8 - symbol:PUM1 "Pumilio homolog 1" specie... 357 9.4e-30 1
UNIPROTKB|F6XHY4 - symbol:PUM1 "Uncharacterized protein" ... 358 1.2e-29 1
UNIPROTKB|E7EWT3 - symbol:PUM1 "Pumilio homolog 1" specie... 357 1.3e-29 1
UNIPROTKB|E2QVA9 - symbol:PUM1 "Uncharacterized protein" ... 358 1.3e-29 1
MGI|MGI:1931751 - symbol:Pum2 "pumilio 2 (Drosophila)" sp... 357 1.3e-29 1
UNIPROTKB|Q8TB72 - symbol:PUM2 "Pumilio homolog 2" specie... 361 1.5e-29 2
UNIPROTKB|E9PCJ0 - symbol:PUM1 "Pumilio homolog 1" specie... 357 1.6e-29 1
UNIPROTKB|Q5T1Z4 - symbol:PUM1 "Pumilio homolog 1" specie... 357 1.6e-29 1
UNIPROTKB|F1STL2 - symbol:PUM1 "Uncharacterized protein" ... 353 1.6e-29 1
UNIPROTKB|Q5T1Z8 - symbol:PUM1 "Pumilio homolog 1 (Drosop... 357 1.7e-29 1
UNIPROTKB|E9PR38 - symbol:PUM1 "Pumilio homolog 1" specie... 352 3.9e-29 1
UNIPROTKB|E1BE82 - symbol:PUM1 "Uncharacterized protein" ... 353 4.5e-29 1
UNIPROTKB|H0YEH2 - symbol:PUM1 "Pumilio homolog 1" specie... 352 5.4e-29 1
UNIPROTKB|B4DG92 - symbol:PUM1 "cDNA FLJ56067, highly sim... 352 5.4e-29 1
UNIPROTKB|Q14671 - symbol:PUM1 "Pumilio homolog 1" specie... 352 5.9e-29 1
MGI|MGI:1931749 - symbol:Pum1 "pumilio 1 (Drosophila)" sp... 352 5.9e-29 1
CGD|CAL0000028 - symbol:MPT5 species:5476 "Candida albica... 350 6.4e-29 2
WB|WBGene00004244 - symbol:puf-8 species:6239 "Caenorhabd... 341 1.1e-28 1
RGD|1307190 - symbol:Pum1 "pumilio homolog 1 (Drosophila)... 347 1.5e-28 1
ZFIN|ZDB-GENE-030131-2074 - symbol:pum1 "pumilio homolog ... 344 4.6e-28 1
CGD|CAL0004399 - symbol:orf19.5381 species:5476 "Candida ... 341 4.7e-28 1
TAIR|locus:2117552 - symbol:PUM6 "pumilio 6" species:3702... 342 2.3e-27 2
TAIR|locus:2087560 - symbol:PUM5 "pumilio 5" species:3702... 333 5.9e-27 1
WB|WBGene00004245 - symbol:puf-9 species:6239 "Caenorhabd... 328 1.1e-26 1
TAIR|locus:2043047 - symbol:PUM3 "pumilio 3" species:3702... 315 1.9e-25 2
TAIR|locus:2043182 - symbol:PUM1 "pumilio 1" species:3702... 314 8.1e-25 1
TAIR|locus:2043187 - symbol:PUM2 "pumilio 2" species:3702... 315 3.5e-24 2
ASPGD|ASPL0000000865 - symbol:AN6587 species:162425 "Emer... 302 1.4e-23 1
POMBASE|SPAC1687.22c - symbol:puf3 "RNA-binding protein P... 286 6.2e-22 1
SGD|S000003146 - symbol:MPT5 "mRNA-binding protein of the... 271 3.9e-20 1
ZFIN|ZDB-GENE-081031-76 - symbol:pum2 "pumilio homolog 2 ... 268 1.4e-19 1
CGD|CAL0000998 - symbol:PUF3 species:5476 "Candida albica... 247 1.3e-18 4
SGD|S000003936 - symbol:PUF3 "Protein of the mitochondria... 245 2.2e-18 2
GENEDB_PFALCIPARUM|PFD0825c - symbol:PFD0825c "RNA-bindin... 242 2.1e-17 1
UNIPROTKB|Q8I1R7 - symbol:PFD0825c "RNA-binding protein o... 242 2.1e-17 1
UNIPROTKB|H0YC97 - symbol:PUM1 "Pumilio homolog 1" specie... 212 2.0e-16 1
WB|WBGene00004242 - symbol:puf-6 species:6239 "Caenorhabd... 203 3.9e-13 1
TAIR|locus:2168529 - symbol:PUM16 "pumilio 16" species:37... 198 4.1e-13 1
WB|WBGene00004243 - symbol:puf-7 species:6239 "Caenorhabd... 202 5.1e-13 1
TAIR|locus:2144010 - symbol:PUM19 "pumilio 19" species:37... 194 1.1e-12 1
UNIPROTKB|H0YDC5 - symbol:PUM1 "Pumilio homolog 1" specie... 159 1.1e-10 1
WB|WBGene00004239 - symbol:puf-3 species:6239 "Caenorhabd... 171 1.5e-09 1
UNIPROTKB|Q9U2G4 - symbol:puf-3 "Protein PUF-3" species:6... 171 1.5e-09 1
POMBASE|SPBC56F2.08c - symbol:SPBC56F2.08c "RNA-binding p... 172 1.8e-09 1
POMBASE|SPCC1682.08c - symbol:SPCC1682.08c "RNA-binding p... 171 2.5e-09 1
WB|WBGene00022257 - symbol:puf-11 species:6239 "Caenorhab... 164 1.9e-08 2
WB|WBGene00004241 - symbol:puf-5 species:6239 "Caenorhabd... 160 2.8e-08 1
TAIR|locus:2144711 - symbol:PUM21 "pumilio 21" species:37... 162 3.4e-08 2
WB|WBGene00004240 - symbol:puf-4 species:6239 "Caenorhabd... 148 2.3e-07 2
ASPGD|ASPL0000066087 - symbol:AN7474 species:162425 "Emer... 143 5.5e-06 1
POMBASE|SPAC4G9.05 - symbol:mpf1 "meiotic PUF family prot... 140 1.2e-05 2
SGD|S000003851 - symbol:JSN1 "Member of the Puf family of... 142 1.9e-05 2
WB|WBGene00001402 - symbol:fbf-2 species:6239 "Caenorhabd... 129 8.2e-05 1
CGD|CAL0000283 - symbol:orf19.4262 species:5476 "Candida ... 127 9.3e-05 1
WB|WBGene00001401 - symbol:fbf-1 species:6239 "Caenorhabd... 123 0.00035 1
UNIPROTKB|Q9N5M6 - symbol:fbf-1 "Fem-3 mRNA-binding facto... 123 0.00035 1
POMBASE|SPBP35G2.14 - symbol:SPBP35G2.14 "RNA-binding pro... 124 0.00045 2
>TAIR|locus:2167111 [details] [associations]
symbol:PUM12 "pumilio 12" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB019234 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00534318
RefSeq:NP_200462.2 UniGene:At.55587 ProteinModelPortal:Q9LVC3
SMR:Q9LVC3 STRING:Q9LVC3 EnsemblPlants:AT5G56510.1 GeneID:835752
KEGG:ath:AT5G56510 TAIR:At5g56510 HOGENOM:HOG000176955
InParanoid:Q9LVC3 OMA:NDIEMIF PhylomeDB:Q9LVC3
Genevestigator:Q9LVC3 Uniprot:Q9LVC3
Length = 596
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 138/333 (41%), Positives = 215/333 (64%)
Query: 237 YSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLI 296
Y+SI E RG+I +AKD+ GCRFLQ+ E++ DIEMI +E+ID + ELM N+L+
Sbjct: 272 YNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLV 331
Query: 297 QKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQS 356
QKL+ V NE+Q +++ S+ L++I D+ G+R +QK+++ + +E+ S
Sbjct: 332 QKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAK-------REEEIS 384
Query: 357 LLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQ 416
+++SALK+ V L K+ +GNHV++RCLQ P K L E +C++LATDR GCC+LQ
Sbjct: 385 IIISALKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQ 444
Query: 417 YCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFA 476
C+ ++ EQK L++++ +NA +LS+ +GNYV+QY+ L++ T +++ QL G Y
Sbjct: 445 KCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTE 504
Query: 477 LSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRR 536
LS+ KCSSNVV+KCL + ++ II E+I + + Q++LDPYGNYVIQ A S+G
Sbjct: 505 LSMQKCSSNVVEKCLKLADDKHRARIIRELINYGRLDQVMLDPYGNYVIQAALKQSKGN- 563
Query: 537 IRQTLYDLVVDNSPFLQSHMYGKNVLAKVRGNK 569
+ L D + N L+++ YGK VL+ + K
Sbjct: 564 VHALLVDAIKLNISSLRTNPYGKKVLSALSSKK 596
>TAIR|locus:2015036 [details] [associations]
symbol:PUM8 "pumilio 8" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AC073942 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000176806 IPI:IPI00535613 PIR:B86355 RefSeq:NP_173643.1
UniGene:At.51720 ProteinModelPortal:Q9LM20 SMR:Q9LM20 PRIDE:Q9LM20
EnsemblPlants:AT1G22240.1 GeneID:838829 KEGG:ath:AT1G22240
TAIR:At1g22240 InParanoid:Q9LM20 OMA:FCIDIAT PhylomeDB:Q9LM20
ProtClustDB:CLSN2914398 Genevestigator:Q9LM20 Uniprot:Q9LM20
Length = 515
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 124/329 (37%), Positives = 202/329 (61%)
Query: 236 SYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHL 295
S + E +G + +AKD+ GCRFLQ ++ + +D +I SEVI + ELM N+L
Sbjct: 192 SLPKVSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYL 251
Query: 296 IQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQ 355
+QKL+ V NEEQ T++IL V S +L+RI + G+RV+Q+L+++ TR+Q+
Sbjct: 252 MQKLLDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVES--IKTRKQI----- 304
Query: 356 SLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLL 415
SL+ SAL+ ++L + +GNHVI+RCLQ + + + E+ + C+D+AT R GCC+L
Sbjct: 305 SLVKSALRPGFLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVL 364
Query: 416 QYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYF 475
Q CI + Q+ +L+ ++ N+ L++ YGNY VQ++L L+ A ++AQL G Y
Sbjct: 365 QKCIAYSSGLQREKLVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYV 424
Query: 476 ALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGR 535
LS+ K SS++V++CL E + I+ E+I P LI DPY N+VIQ A V++G
Sbjct: 425 ELSMQKFSSHMVERCLTHCPESRPQ-IVRELISVPHFDILIQDPYANFVIQAALAVTKGS 483
Query: 536 RIRQTLYDLVVDNSPFLQSHMYGKNVLAK 564
+ TL +++ +S L+++ Y K + ++
Sbjct: 484 -LHATLVEVIRPHS-ILRNNPYCKRIFSR 510
>TAIR|locus:2194699 [details] [associations]
symbol:PUM7 "pumilio 7" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC012680 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00517199 PIR:H96810
RefSeq:NP_177940.2 UniGene:At.52554 ProteinModelPortal:Q9C9R6
SMR:Q9C9R6 EnsemblPlants:AT1G78160.1 GeneID:844152
KEGG:ath:AT1G78160 TAIR:At1g78160 HOGENOM:HOG000176806
InParanoid:Q9C9R6 OMA:REYSAYS PhylomeDB:Q9C9R6
Genevestigator:Q9C9R6 Uniprot:Q9C9R6
Length = 650
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 127/375 (33%), Positives = 218/375 (58%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARARHHHHRT-----SYSSIEELRGRIIL 249
P S S F SD + + + +N A ++ + T S ++ +++G + L
Sbjct: 281 PMVSKCSEPFSSDESFFMNGKSIDHQRSNTRALMSNNGNPTEICHPSLPNMCDIQGYVYL 340
Query: 250 VAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMT 309
+AKD+ GCRFLQ+ DE +D +I +EVI + ELM N+L+QKL+ V EEQ T
Sbjct: 341 MAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKLLDVCTEEQRT 400
Query: 310 KLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSL 369
+++L +L+RI + G+RV+Q+L++ R + +Q SL+ AL+ + L
Sbjct: 401 QIVLVATEEPGQLIRISLNAYGTRVVQRLVET----IR---SGKQISLVKLALRPGFLDL 453
Query: 370 SKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKAR 429
K +GNHVI+RCLQ + K + + + C ++AT R GCC+LQ CI + +Q+ +
Sbjct: 454 IKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQREK 513
Query: 430 LIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQK 489
LIA++ N+ +L++ +GNY VQ+++ L+IP A ++AQL G Y LS+ K SS++V++
Sbjct: 514 LIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVER 573
Query: 490 CLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDNS 549
CL+ E + I+ E++ P QL+ DPY N+VIQ A ++G + +L +++ +S
Sbjct: 574 CLMHCPESRPQ-IVRELVSVPHFDQLLQDPYANFVIQAALAATKGP-LHASLVEVIRPHS 631
Query: 550 PFLQSHMYGKNVLAK 564
L+++ Y K + ++
Sbjct: 632 -ILRNNPYCKRIFSR 645
>DICTYBASE|DDB_G0289987 [details] [associations]
symbol:DDB_G0289987 "Pumilio homology domain family
member 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50103 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0289987 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008270 GO:GO:0003723
EMBL:AAFI02000150 eggNOG:COG5099 RefSeq:XP_635942.1
ProteinModelPortal:Q54GR0 EnsemblProtists:DDB0188671 GeneID:8627424
KEGG:ddi:DDB_G0289987 InParanoid:Q54GR0 OMA:IVRISMN Uniprot:Q54GR0
Length = 1036
Score = 534 (193.0 bits), Expect = 6.6e-52, Sum P(2) = 6.6e-52
Identities = 122/332 (36%), Positives = 194/332 (58%)
Query: 236 SYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHL 295
+Y+SI+++ G I + +D+ GCRFLQKK++E + E+I EV D + ELM N+L
Sbjct: 705 TYTSIDQVMGSIYPLCRDQHGCRFLQKKLEESDLQLTEIIFKEVCDYMLELMTDPFGNYL 764
Query: 296 IQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQ 355
QKL+ N+ Q +I V + ++RI ++ G+R +QK++ EY T T EQ
Sbjct: 765 CQKLLEHCNDRQRLTIIEKVGTD---IVRISMNMHGTRAVQKMI---EYLT----TPEQI 814
Query: 356 SLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAEN--CLDLATDRSGCC 413
L+ +LK+ V L + +GNHVI++CL K P + + + ++ + C+ +AT R GCC
Sbjct: 815 QLIKRSLKDSVVPLIQDLNGNHVIQKCLNKLSPQDNQFIYDAVSSDGSCIAVATHRHGCC 874
Query: 414 LLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGR 473
+LQ CI A E QK +LI +V+AN+ VL + YGNYVVQY+L L + ++ + G
Sbjct: 875 VLQRCIDHASESQKLQLIQEVIANSLVLVQDPYGNYVVQYVLDLPFQGLATEMAKRFVGH 934
Query: 474 YFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQ 533
L+ K SSNVV+KCL + +I E+I + ++ L+ DPY NYVIQT+ +S+
Sbjct: 935 VPILATQKFSSNVVEKCLHVADAITRGYLIQEVIDYDNLLHLLQDPYANYVIQTSLTISE 994
Query: 534 GRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ L + + + P L++ YGK + K+
Sbjct: 995 PHQ-HTKLVEAIRPHLPLLKNTPYGKRIQNKI 1025
Score = 174 (66.3 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 57/234 (24%), Positives = 108/234 (46%)
Query: 230 HHHHRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDE-RNPIDIEMILSEVIDDLHELMR 288
H + R + IE++ I+ ++ + G R +QK ++ P I++I + D + L++
Sbjct: 771 HCNDRQRLTIIEKVGTDIVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRSLKDSVVPLIQ 830
Query: 289 HQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQ 348
+ NH+IQK + L+ + + I VSS + + G V+Q+ +D +
Sbjct: 831 DLNGNHVIQKCLNKLSPQD-NQFIYDAVSSDGSCIAVATHRHGCCVLQRCIDHASESQKL 889
Query: 349 QLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATD 408
QL QE + N V L + P+GN+V++ L ++ + + LAT
Sbjct: 890 QLIQE-------VIANSLV-LVQDPYGNYVVQYVLDLPFQGLATEMAKRFVGHVPILATQ 941
Query: 409 RSGCCLLQYCIPLAQEEQKARLIADVVA--NAYVLSEHSYGNYVVQYILGLKIP 460
+ +++ C+ +A + LI +V+ N L + Y NYV+Q L + P
Sbjct: 942 KFSSNVVEKCLHVADAITRGYLIQEVIDYDNLLHLLQDPYANYVIQTSLTISEP 995
Score = 40 (19.1 bits), Expect = 6.6e-52, Sum P(2) = 6.6e-52
Identities = 20/64 (31%), Positives = 26/64 (40%)
Query: 16 PPPEN-NSRHPVTTSQQSHVASQNLHLIP----IYQ----KPNQQDYHVENPSLQNPTTQ 66
P P+ + P+ +QQ+ Q IP I Q KP QQ + P Q P Q
Sbjct: 111 PQPQQFYQKPPIPQTQQTQQPQQYYQPIPQQPQIQQPIPHKPPQQQQQQQTP--QPPYLQ 168
Query: 67 DQLS 70
Q S
Sbjct: 169 RQPS 172
Score = 37 (18.1 bits), Expect = 1.4e-51, Sum P(2) = 1.4e-51
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 46 QKPNQQDYHVENPSLQNPTTQDQLSGHLH 74
Q+ QQ Y + N + S H H
Sbjct: 237 QQQQQQQYLQQQQQFNNSNNNNNSSHHHH 265
>TAIR|locus:2138258 [details] [associations]
symbol:PUM11 "pumilio 11" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL161513 eggNOG:COG5099 EMBL:AL161813 HOGENOM:HOG000124802
IPI:IPI00541594 PIR:A85089 RefSeq:NP_192624.2 UniGene:At.54217
ProteinModelPortal:Q9LDW3 SMR:Q9LDW3 EnsemblPlants:AT4G08840.1
GeneID:826455 KEGG:ath:AT4G08840 TAIR:At4g08840 InParanoid:Q9LDW3
OMA:MSISDER PhylomeDB:Q9LDW3 Genevestigator:Q9LDW3 Uniprot:Q9LDW3
Length = 556
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 127/332 (38%), Positives = 202/332 (60%)
Query: 238 SSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQ 297
+S+ + G + L+AKD+ GCR LQK VDE N +D+ +I EVI+++ EL N+LIQ
Sbjct: 237 ASMVDSYGSVYLMAKDQLGCRLLQKFVDEGNFVDVMIIFKEVINNVIELGTDPFGNYLIQ 296
Query: 298 KLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSL 357
KLI V NEEQ T++++ + S L++I + G+RV+QKL++ T+EQ SL
Sbjct: 297 KLIEVCNEEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIET-------VTTKEQISL 349
Query: 358 LVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQY 417
+ SAL +SL + +GNHVI CL+ F P+ K +LE + C+++AT R GCC+LQ
Sbjct: 350 VKSALVPGFLSLFRELNGNHVILNCLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQR 409
Query: 418 CIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFAL 477
C+ + EQ +L+ ++ N+ +L++ +GNY+VQYI+ K+ V +V+ +L G Y L
Sbjct: 410 CVSYSVGEQHEKLVDEISRNSLLLAQDPFGNYLVQYIIEKKVGGV--NVLFELRGNYVKL 467
Query: 478 SLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRI 537
+ K S+VV+KCL E +S I+NE++ L+ DPY NYVIQ A ++G +
Sbjct: 468 ATQKFGSHVVEKCLRYYPESRSQ-IVNELVSVLNFGYLLQDPYANYVIQCALSKTKGF-V 525
Query: 538 RQTLYDLV--VDN---SPFLQSHMYGKNVLAK 564
R +L + V +N +P+ + ++ KN+ K
Sbjct: 526 RASLVEKVRRYENLKMTPYCK-RIFSKNLWKK 556
Score = 133 (51.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 55/265 (20%), Positives = 115/265 (43%)
Query: 304 NEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALK 363
N+E L S+V S + + D G R++QK +D G + + +E +
Sbjct: 229 NKEDSLDLA-SMVDSYGSVYLMAKDQLGCRLLQKFVDEGNFVDVMIIFKE-------VIN 280
Query: 364 NITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAEN---CLDLATDRSGCCLLQYCIP 420
N+ + L P GN++I++ ++ + +L + + ++ + G ++Q I
Sbjct: 281 NV-IELGTDPFGNYLIQKLIEVCNEEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIE 339
Query: 421 LAQEEQKARLIADVVANAYV-LSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
+++ L+ + ++ L GN+V+ L P ++ ++
Sbjct: 340 TVTTKEQISLVKSALVPGFLSLFRELNGNHVILNCLKFFSPNDNKFILEAATKFCIEIAT 399
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQ 539
+ V+Q+C+ S EQ +++EI R+ + L DP+GNY++Q + G
Sbjct: 400 TRHGCCVLQRCVSYSVGEQHEKLVDEISRNSLL--LAQDPFGNYLVQYIIEKKVGGV--N 455
Query: 540 TLYDLVVDNSPFLQSHMYGKNVLAK 564
L++L N L + +G +V+ K
Sbjct: 456 VLFELR-GNYVKLATQKFGSHVVEK 479
>TAIR|locus:2011349 [details] [associations]
symbol:PUM9 "pumilio 9" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HOGENOM:HOG000124802 EMBL:DQ446324
IPI:IPI00533721 PIR:D86479 RefSeq:NP_174811.1 UniGene:At.51961
ProteinModelPortal:Q1PFN9 SMR:Q1PFN9 PRIDE:Q1PFN9
EnsemblPlants:AT1G35730.1 GeneID:840477 KEGG:ath:AT1G35730
TAIR:At1g35730 InParanoid:Q1PFN9 OMA:CAEIAIH PhylomeDB:Q1PFN9
ProtClustDB:CLSN2681930 Genevestigator:Q1PFN9 Uniprot:Q1PFN9
Length = 564
Score = 507 (183.5 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 125/332 (37%), Positives = 201/332 (60%)
Query: 239 SIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQK 298
S+ E+ G + L+AKD+ GCR LQK V+E + ++IL +ID + EL N+++QK
Sbjct: 246 SMVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFGNYIVQK 305
Query: 299 LIGVLNEEQMTKLILSVVSSQQR-LLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSL 357
L V +EEQ T LI+SV++S R L+RIC + G+RV+QK+++ + T+QQ+ +L
Sbjct: 306 LFDVSDEEQRT-LIVSVLTSNPRELIRICLNTYGTRVVQKMIETVK--TKQQI-----AL 357
Query: 358 LVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQY 417
+ S LK ++L K +GNHVI+ CLQ P+ + +LE + C ++A R GCC+LQ
Sbjct: 358 VKSGLKPGFLALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQC 417
Query: 418 CIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFAL 477
CI + Q+ RL+A++ N+ LS+ +GNYVVQY++ ++ V ++ Q Y L
Sbjct: 418 CISNSVGLQRERLVAEISRNSLHLSQDPFGNYVVQYLIDQQVSAVK--LLVQFRMHYAEL 475
Query: 478 SLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRI 537
+ K SS+V++KCL + E ++ I+ E++ P L+ DPY NYVIQTA V++G +
Sbjct: 476 ATQKFSSHVIEKCLRKYPESRAE-IVRELLCVPNFEYLLQDPYANYVIQTALSVTKGP-V 533
Query: 538 RQTLYDLV-----VDNSPFLQSHMYGKNVLAK 564
R L V + +SP+ + ++ K +L K
Sbjct: 534 RAKLVAKVYRYGKLHSSPYCKK-IFSKTILKK 564
Score = 143 (55.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 52/220 (23%), Positives = 106/220 (48%)
Query: 312 ILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSK 371
++S+V + + D G RV+QKL++ G + E + +L++ + ++ V LS
Sbjct: 244 LVSMVEIYGSVNLMAKDQIGCRVLQKLVEEGTF-------HEAKVILLAIIDHV-VELSM 295
Query: 372 SPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDL---ATDRSGCCLLQYCIPLAQEEQKA 428
P GN+++++ + ++ + N +L + G ++Q I + +Q+
Sbjct: 296 DPFGNYIVQKLFDVSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQI 355
Query: 429 RLIADVVANAYV-LSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFA-LSLGKCSSNV 486
L+ + ++ L + GN+V+Q L P + V + A +Y A +++ + V
Sbjct: 356 ALVKSGLKPGFLALVKDLNGNHVIQSCLQTLGPNDN-EFVLEAATKYCAEIAIHRHGCCV 414
Query: 487 VQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQ 526
+Q C+ S Q ++ EI R+ + L DP+GNYV+Q
Sbjct: 415 LQCCISNSVGLQRERLVAEISRNS--LHLSQDPFGNYVVQ 452
Score = 37 (18.1 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 130 FINSLPTSFPLENHETID 147
F+ SL T+ L+NH++++
Sbjct: 26 FLPSLDTNPFLKNHKSVE 43
>ASPGD|ASPL0000057098 [details] [associations]
symbol:AN10071 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BN001308 GO:GO:0003723
EnsemblFungi:CADANIAT00002391 OMA:HKFSSNV Uniprot:C8VU22
Length = 650
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 116/327 (35%), Positives = 185/327 (56%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
IE R I + KD+ GCR+LQ+K++ERN ++MI +E + ELM N+L QKL
Sbjct: 234 IEYYRNEIYGLCKDQHGCRYLQRKLEERNDDQLQMIFAETHSHVIELMTDPFGNYLCQKL 293
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ N+EQ T L V + +L++I + G+R +QK++ E+ + T+EQ ++
Sbjct: 294 LEYSNDEQRTVL---VNKAAPQLVKIALNQHGTRALQKMI---EFIS----TEEQTQTVI 343
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
ALK+ V L + +GNHVI++CL + + ++ + + + C+ + T R GCC+LQ CI
Sbjct: 344 DALKDHVVELVQDLNGNHVIQKCLNRLTAEKSQFIYDAVGAQCVTVGTHRHGCCVLQRCI 403
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
A Q+ARLI + NA+ L + +GNYVVQYIL L + T + + R LS
Sbjct: 404 DHASGAQRARLIEQITENAFALVQDPFGNYVVQYILDLAEARFTEPLCREFLSRIPKLSK 463
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQ-GRRIR 538
K SSNV++KCL + EE +I E++ E+ +++ D Y NYV+QTA D + R R
Sbjct: 464 HKFSSNVIEKCLRTADEEMRRQMIEEMLAGDELEKMLRDSYANYVVQTAMDYADPATRAR 523
Query: 539 QTLYDLVVDNSPFLQSHMYGKNVLAKV 565
Y + P L+ +G+ + +K+
Sbjct: 524 IVKY--IEPILPSLRGTPHGRRIGSKI 548
>POMBASE|SPAC4G8.03c [details] [associations]
symbol:SPAC4G8.03c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC4G8.03c GO:GO:0005794 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 PIR:T38847 RefSeq:NP_593062.1
ProteinModelPortal:Q09829 EnsemblFungi:SPAC4G8.03c.1 GeneID:2543684
KEGG:spo:SPAC4G8.03c OrthoDB:EOG4QJVZ9 NextBio:20804690
Uniprot:Q09829
Length = 780
Score = 446 (162.1 bits), Expect = 2.6e-44, Sum P(2) = 2.6e-44
Identities = 99/325 (30%), Positives = 179/325 (55%)
Query: 245 GRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLN 304
G + + KD+ GCR+LQK +DE ++ + E+ + +LM N++ QKL +
Sbjct: 465 GHLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYAS 524
Query: 305 EEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQ-SLLVSALK 363
EQ ++ + + ++ IC +L G+R MQ ++D +LT +Q SLL+ +
Sbjct: 525 REQKLSMLNGI---GEGIVDICSNLYGTRSMQNIID--------KLTSNEQISLLLKIII 573
Query: 364 NITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQ 423
+L+ +G HV+++C+ KFPP+ + L + EN + LAT+R GCC+LQ C+
Sbjct: 574 PSLTTLACDNNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTN 633
Query: 424 EEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCS 483
+ + RL+ ++ + +L +++YGNY+VQ++L L I T ++ + G LSL K S
Sbjct: 634 GDIQERLVNSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFS 693
Query: 484 SNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQ---TAWDVSQGRRIRQT 540
SN +++C+ + ++ E + P I QL+ D Y NYV+Q D SQ I ++
Sbjct: 694 SNAIEQCIRTASPSTREQMLQEFLSFPNIEQLLDDCYANYVMQRFLNVADESQKFLILRS 753
Query: 541 LYDLVVDNSPFLQSHMYGKNVLAKV 565
+ ++ P +Q+ +G+++LAK+
Sbjct: 754 ISHVI----PKIQNTRHGRHILAKL 774
Score = 51 (23.0 bits), Expect = 2.6e-44, Sum P(2) = 2.6e-44
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 97 ESGLSRPSQFAAPRP-PLSQYLPYPIPL---NQAQYSFINSLPTSFPLENHETIDLQS 150
E L++ SQ +P PLS Y L NQ+ +S + PT T D++S
Sbjct: 9 ELNLNKKSQETNRKPSPLSSYTSISRELDYANQSPFSSNSFSPTELKARTSATFDVRS 66
>TAIR|locus:2011360 [details] [associations]
symbol:PUM10 "pumilio 10" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00544215 PIR:F86479
RefSeq:NP_174813.1 UniGene:At.51962 ProteinModelPortal:Q9LP21
SMR:Q9LP21 PRIDE:Q9LP21 EnsemblPlants:AT1G35750.1 GeneID:840480
KEGG:ath:AT1G35750 TAIR:At1g35750 HOGENOM:HOG000124802
InParanoid:Q9LP21 OMA:GFEEMMA PhylomeDB:Q9LP21
Genevestigator:Q9LP21 Uniprot:Q9LP21
Length = 528
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 116/327 (35%), Positives = 196/327 (59%)
Query: 239 SIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQK 298
S+ E+ G + L+A+D+ GCR LQK V+E +D ++I E+ID + EL N+++QK
Sbjct: 210 SMVEIYGSVNLMARDQIGCRALQKLVEEGTVLDSKVIFLEIIDHVVELSMDPLGNYIVQK 269
Query: 299 LIGVLNEEQMTKLILSVVSSQQR-LLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSL 357
L+ V +EEQ T +I+SV++S+ R L++IC + +G+RV+QK++ + T+QQ+ +L
Sbjct: 270 LLVVSDEEQRT-MIVSVLTSKPRELIKICLNTNGTRVIQKMIKTVK--TKQQI-----AL 321
Query: 358 LVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQY 417
+ SAL+ + L +G HV++ CL+ P+ K ++E E C LAT + GC +LQ
Sbjct: 322 VKSALEPGFLVLVNDSNGYHVLQSCLEFLVPNDNKFVVEAATEYCAQLATHQYGCYVLQC 381
Query: 418 CIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFAL 477
+ Q RL+A++ ++ LS+ +GNYVVQ ++ ++ V +++ L
Sbjct: 382 SLINTVGLQHERLVAEISRDSLRLSQDPFGNYVVQCLIDQQVSSV--NLLLPFRTHCIEL 439
Query: 478 SLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRI 537
+ K SS+V++KCL + E ++ I+ E++ +P QL+ DPY NYVIQTA V++G +
Sbjct: 440 ATQKFSSHVIEKCLRKYPESRAE-IVRELLSYPNFEQLLQDPYANYVIQTALSVTKGA-V 497
Query: 538 RQTLYDLVVDNSPFLQSHMYGKNVLAK 564
R L + V LQS+ Y K + +K
Sbjct: 498 RARLVEKVKRFGK-LQSNPYCKKIFSK 523
Score = 128 (50.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 51/224 (22%), Positives = 103/224 (45%)
Query: 312 ILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSK 371
++S+V + + D G R +QKL++ G + + + + + ++ V LS
Sbjct: 208 LVSMVEIYGSVNLMARDQIGCRALQKLVEEGT-------VLDSKVIFLEIIDHV-VELSM 259
Query: 372 SPHGNHVIKRCLQKFPPDYTKDLLEEIAEN---CLDLATDRSGCCLLQYCIPLAQEEQKA 428
P GN+++++ L + ++ + + + + +G ++Q I + +Q+
Sbjct: 260 DPLGNYIVQKLLVVSDEEQRTMIVSVLTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQI 319
Query: 429 RLIADVVANAY-VLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFA-LSLGKCSSNV 486
L+ + + VL S G +V+Q L +P VV + A Y A L+ + V
Sbjct: 320 ALVKSALEPGFLVLVNDSNGYHVLQSCLEFLVPNDNKFVV-EAATEYCAQLATHQYGCYV 378
Query: 487 VQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWD 530
+Q L+ + Q ++ EI R + ++L DP+GNYV+Q D
Sbjct: 379 LQCSLINTVGLQHERLVAEISR--DSLRLSQDPFGNYVVQCLID 420
>POMBASE|SPAC6G9.14 [details] [associations]
symbol:SPAC6G9.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC6G9.14 GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 OrthoDB:EOG42NN7Z PIR:T39076
RefSeq:NP_594123.1 ProteinModelPortal:Q92359
EnsemblFungi:SPAC6G9.14.1 GeneID:2542056 KEGG:spo:SPAC6G9.14
NextBio:20803131 Uniprot:Q92359
Length = 681
Score = 442 (160.7 bits), Expect = 2.1e-43, Sum P(2) = 2.1e-43
Identities = 104/331 (31%), Positives = 186/331 (56%)
Query: 235 TSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANH 294
+S +S+ I+ KD+ GCR+LQ+ ++++N I+ + +E L LM N+
Sbjct: 336 SSVASLSLQNSNILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNY 395
Query: 295 LIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQ 354
L QKL +E Q + I +++ +L+ I ++ G+R +QK++D P +Q
Sbjct: 396 LCQKLFEHASEAQRSTFI-QIIAP--KLVPISFNMHGTRALQKIIDLVSSP-------DQ 445
Query: 355 QSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCL 414
S +V+AL+ V L+K +GNHVI++CL KF + + + + I E+ LD++T R GCC+
Sbjct: 446 ISCIVNALRPNVVLLTKDLNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCV 505
Query: 415 LQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRY 474
+Q C A Q +L+ +V +A L + ++GNYV+QY+L L P T +++ +
Sbjct: 506 VQRCFDHASPAQIEQLVEHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKV 565
Query: 475 FALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQG 534
ALS K SSNV++KC+ + +I+E++ + +L+ D + NYVIQTA D +
Sbjct: 566 RALSTQKFSSNVMEKCIFFAPAAIKEKLISELMDEKHLPKLLRDSFANYVIQTALDNASV 625
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
++ R L + + P +++ G+ +L+K+
Sbjct: 626 KQ-RAELVERIKPLIPSIKNTPCGRRILSKL 655
Score = 40 (19.1 bits), Expect = 2.1e-43, Sum P(2) = 2.1e-43
Identities = 25/115 (21%), Positives = 46/115 (40%)
Query: 25 PVTTSQQSHVASQNLHLIPIYQKPNQQDYHVEN-PSLQNPTTQDQLSGHLHYSNYPYDKS 83
PV +SQ S + ++++ K N D + N P + SG + S +
Sbjct: 20 PVFSSQYSDIENKDV------LKSNSWDPYAANAPIALSEIPSSSKSGKTNGSKAAVESG 73
Query: 84 LAMEPSTCRCRTPESGLSRPSQFAAPRPPLSQYLPYPIPLNQAQYSFINSLPTSF 138
LA RT ++R + + S ++PY + N ++ +S T+F
Sbjct: 74 LAS--GAFGNRT--GNMNRNTSMSGYTFGSSNFVPYNLLSNTPSFTTSHSSSTTF 124
>TAIR|locus:2167786 [details] [associations]
symbol:PUM14 "pumilio 14" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 HOGENOM:HOG000136003
ProtClustDB:CLSN2686651 EMBL:DQ056705 IPI:IPI00526385
RefSeq:NP_199125.2 UniGene:At.55331 ProteinModelPortal:Q4PSD1
SMR:Q4PSD1 PRIDE:Q4PSD1 EnsemblPlants:AT5G43110.1 GeneID:834328
KEGG:ath:AT5G43110 TAIR:At5g43110 InParanoid:Q4PSD1
PhylomeDB:Q4PSD1 Genevestigator:Q4PSD1 Uniprot:Q4PSD1
Length = 518
Score = 423 (154.0 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 119/370 (32%), Positives = 190/370 (51%)
Query: 200 LSHGFLSDHHHLGSSTNASSRYNNFYARARHHHHRTSYS-SIEELRGRIILVAKDEQGCR 258
L++GFL+D S S Y N + +++ R + + + AKD++
Sbjct: 158 LNNGFLNDVPS-SSRDRVSDYYTNRFGYEGYNYWRGNEGFDYNQCQASFSAFAKDKEMSE 216
Query: 259 FLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSS 318
L + + ++ I + +I D+ ELM + ++Q L+ + EQ+ +L+ V
Sbjct: 217 RLGMSIFQGTKETVDAIYNGLIGDICELMVDPYGSDVVQLLMRRCSSEQIVQLVDIVTQQ 276
Query: 319 QQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHV 378
+ + IC D G+ +Q LL + Q+ + +V ++ + + LSKS H V
Sbjct: 277 MFQFVNICIDSLGTNAIQVLLTCINERAKDQIPR-----IVDVVRTVALQLSKSNHAIFV 331
Query: 379 IKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIP---LAQEEQKARLIADVV 435
I C + FP + + LLE I +NC +A D+ GCCLLQ C + E + RLI + +
Sbjct: 332 ILACFRLFPL-HCRLLLELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNLEIRQRLIMEAI 390
Query: 436 ANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESG 495
ANA L + YGNYVVQYI+ L + +V QL G Y L+ K S+ VQK LL+
Sbjct: 391 ANALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQK-LLKLR 449
Query: 496 EEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQSH 555
S I+ +++R EI L+LDP+GNYVIQTAW VS+ +R+ L + N P ++ +
Sbjct: 450 WIDSRVIVIDLLR--EIDTLLLDPFGNYVIQTAWFVSKDD-VRRMLRYHIERNIPMMRCN 506
Query: 556 MYGKNVLAKV 565
+G VL K+
Sbjct: 507 KFGNKVLEKL 516
Score = 44 (20.5 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 114 SQYLPYPIPLNQAQYSFINSLPTSFPLENHETIDLQ-SGFDLQSGFEGLNIDGLGLPRPN 172
SQ P P +Q + +N + + ET++ G G N D + LPR
Sbjct: 32 SQPQPISSPFHQPENQ-VNRVNPGSHYYDLETLESSFGGLSFNDSSVGQNGDSIHLPRRT 90
Query: 173 N 173
N
Sbjct: 91 N 91
>SGD|S000002982 [details] [associations]
symbol:PUF4 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0008104 "protein localization"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0001308 "negative regulation
of chromatin silencing involved in replicative cell aging"
evidence=IGI;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002982 GO:GO:0005737 GO:GO:0008104
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941
GO:GO:0017148 GO:GO:0003729 GO:GO:0006351 EMBL:S58126 GO:GO:0000288
eggNOG:COG5099 GeneTree:ENSGT00390000017241 GO:GO:0001308
OrthoDB:EOG42NN7Z EMBL:S57889 EMBL:Z72536 PIR:S64016
RefSeq:NP_011501.1 PDB:3BWT PDB:3BX2 PDB:3BX3 PDB:4DZS PDBsum:3BWT
PDBsum:3BX2 PDBsum:3BX3 PDBsum:4DZS ProteinModelPortal:P25339
SMR:P25339 DIP:DIP-2638N IntAct:P25339 MINT:MINT-425380
STRING:P25339 PaxDb:P25339 PeptideAtlas:P25339 EnsemblFungi:YGL014W
GeneID:852870 KEGG:sce:YGL014W CYGD:YGL014w HOGENOM:HOG000115799
OMA:FRRQTFH EvolutionaryTrace:P25339 NextBio:972496
Genevestigator:P25339 GermOnline:YGL014W Uniprot:P25339
Length = 888
Score = 429 (156.1 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 120/381 (31%), Positives = 204/381 (53%)
Query: 199 NLSHGFLSDHHHLGSSTNASSRYNNFYARARHHHHRTSYSS------IEELRGRIILVAK 252
N HG+ +++++ ++ N ++ N + + + SS +++ G I + K
Sbjct: 514 NSYHGYYNNNNNNNNNNNNNNNSNATNSNSAEKQRKIEESSRFADAVLDQYIGSIHSLCK 573
Query: 253 DEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLI 312
D+ GCRFLQK++D + I E D ELM N+LIQKL+ + EQ +++
Sbjct: 574 DQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQ--RIV 631
Query: 313 LSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKS 372
L+ +SS + I + G+R +QKL++ + T E+ ++V +L+ TV LSK
Sbjct: 632 LTKISSPH-FVEISLNPHGTRALQKLIECIK-------TDEEAQIVVDSLRPYTVQLSKD 683
Query: 373 PHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIA 432
+GNHVI++CLQ+ P+ + + + I+++C+D+AT R GCC+LQ C+ EQ L
Sbjct: 684 LNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCD 743
Query: 433 DVVANAYVLSEHSYGNYVVQYILGLKIPQ----VTADVVAQLAGRYFALSLGKCSSNVVQ 488
++A L+ +GNYVVQYI+ + + T +V L R LS+ K SNV++
Sbjct: 744 KLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIE 803
Query: 489 KCLLESGEEQSTGIINEIIRH---PEIVQLILDPYGNYVIQTAWDVS--QGRRIRQTLYD 543
K L + S +I EI+ + I L+ D YGNYV+QTA D+S Q + + L +
Sbjct: 804 KILKTA--IVSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSE 861
Query: 544 LVVDN--SPFLQSHMYGKNVL 562
+V P +++ +GK ++
Sbjct: 862 IVAPLLVGP-IRNTPHGKRII 881
Score = 174 (66.3 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 119/548 (21%), Positives = 217/548 (39%)
Query: 15 FPPPENNSRHPVTTSQQSHVASQNLHLIPIYQKPNQQDYHVENPSLQN----PTTQDQLS 70
F P N + H + + + +HL P+ N V ++N PTT + +
Sbjct: 352 FSPILNPTSHSLNANSPIPLTQSPIHLAPVL---NPSSNSVAFSDMKNDGGKPTTDNDKA 408
Query: 71 G-HLHYSNYPYDKSLAMEPSTCRCRTPESGLSRPSQFAAPRPPLSQYLPYPIPLNQAQYS 129
G ++ + +M+P P+ P + PP + +P P L Q
Sbjct: 409 GPNVRMDLINPNLGPSMQPF--HILPPQQNTPPPPWLYSTPPPFNAMVP-PHLLAQNHMP 465
Query: 130 FINSLPTSFPLENHETIDLQSGFDLQSGFEGLNIDGLGLPRPNNLTVQRNLVXXXXXXXX 189
+NS N+ + + S D N D +G NN R+ V
Sbjct: 466 LMNSANNKHHGRNNNS--MSSHND--------N-DNIGNSNYNNKDTGRSNVGKMKNMKN 514
Query: 190 XXXXSPSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARARHHHHRTSYSSIEELRGRIIL 249
Y+N ++ +++++ +++NA++ + R R + + +++ G I
Sbjct: 515 SYHGY--YNNNNNN--NNNNNNNNNSNATNSNSAEKQRKIEESSRFADAVLDQYIGSIHS 570
Query: 250 VAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQ-- 307
+ KD+ GCRFLQK++D + I E D ELM N+LIQKL+ + EQ
Sbjct: 571 LCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRI 630
Query: 308 -MTKL--------------------ILSVVSSQQRLLRICDDLSGSRV-MQKLLDAGEYP 345
+TK+ ++ + + + + D L V + K L+
Sbjct: 631 VLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVI 690
Query: 346 TR--QQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCL 403
+ Q+L E + A+ + + ++ HG V++RCL + +L +++
Sbjct: 691 QKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVD 750
Query: 404 DLATDRSGCCLLQYCIPLAQEEQKARLIADVV----ANAYVLSEHSYGNYVVQYILGLKI 459
L D G ++QY I E+ K +V A LS H +G+ V++ IL I
Sbjct: 751 KLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTAI 810
Query: 460 PQVTADVVAQL---AGRYFALSLGKCS-SNVVQKCLLESGEEQSTGIINEIIRHPEIVQ- 514
V+ ++ ++ G SL S N V + L+ +Q+ + + EIV
Sbjct: 811 --VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRL---SEIVAP 865
Query: 515 LILDPYGN 522
L++ P N
Sbjct: 866 LLVGPIRN 873
Score = 164 (62.8 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 56/245 (22%), Positives = 114/245 (46%)
Query: 325 ICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQ 384
+C D G R +QK LD L + + K+ TV L GN++I++ L+
Sbjct: 571 LCKDQHGCRFLQKQLDI--------LGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLE 622
Query: 385 KFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYV-LSE 443
+ + L + + + ++++ + G LQ I + +++A+++ D + V LS+
Sbjct: 623 EVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSK 682
Query: 444 HSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGII 503
GN+V+Q L P+ + ++ ++ + V+Q+CL EQ +
Sbjct: 683 DLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLC 742
Query: 504 NEIIRHPEIVQLILDPYGNYVIQ-TAWDVSQGRRIRQT--LYDLVVDNSPFLQSHMYGKN 560
++++ + +L LDP+GNYV+Q ++ + T + L+ + L H +G N
Sbjct: 743 DKLLALVD--KLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSN 800
Query: 561 VLAKV 565
V+ K+
Sbjct: 801 VIEKI 805
>TAIR|locus:2167771 [details] [associations]
symbol:PUM13 "pumilio 13" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 IPI:IPI00522991 RefSeq:NP_199123.1
UniGene:At.55330 ProteinModelPortal:Q9FMH4 SMR:Q9FMH4 PaxDb:Q9FMH4
PRIDE:Q9FMH4 EnsemblPlants:AT5G43090.1 GeneID:834325
KEGG:ath:AT5G43090 TAIR:At5g43090 HOGENOM:HOG000136003
InParanoid:Q9FMH4 OMA:NGERNIW PhylomeDB:Q9FMH4
ProtClustDB:CLSN2686651 Genevestigator:Q9FMH4 Uniprot:Q9FMH4
Length = 527
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 115/380 (30%), Positives = 196/380 (51%)
Query: 200 LSHGFLSDHHHLGSSTNASSRYNNFYARARHHHHRTS----Y------SSIEELRGRIIL 249
L++ FL+ S N S Y N + ++ R++ Y SS+E RG
Sbjct: 157 LNNSFLNGVP-CASRNNVSDYYTNIFGYGVNNSWRSNEGCTYNQDQAASSMENGRGSYFS 215
Query: 250 VAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMT 309
+A D + L+K + I+MI +I + ELM N +++ LIG + EQ+
Sbjct: 216 IATDRVWSKELEKTIFVGTKETIDMIFDGLIVGICELMVDPFGNDVVKLLIGKCSSEQII 275
Query: 310 KLILSVVSSQ-QRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVS 368
LI+ VV+ + + IC + G+ +Q LL + Q+ + ++ A+ ++ +
Sbjct: 276 -LIVDVVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPR-----IMDAISSVALQ 329
Query: 369 LSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIP---LAQEE 425
L+++ + +VI C + F + LLE ++++C +A D++GCCLLQ C + E
Sbjct: 330 LTRNTNAKYVILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNHE 389
Query: 426 QKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSN 485
+ RLI++V+ +A L + +GNYVVQY++ L T +V +L Y L+ K S+
Sbjct: 390 IRQRLISEVIEHALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSH 449
Query: 486 VVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLV 545
VVQK L G + I+ +++R I L+LDP+GNYVIQTAW VS+ +RQ L +
Sbjct: 450 VVQKLLKLRGIDSKL-IVVDLLRG--IDTLLLDPFGNYVIQTAWFVSK-EDVRQMLRYYI 505
Query: 546 VDNSPFLQSHMYGKNVLAKV 565
N ++ + +G +L K+
Sbjct: 506 ERNIRLMRCNKFGNKILEKL 525
>TAIR|locus:2133534 [details] [associations]
symbol:PUM15 "pumilio 15" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AF076275 eggNOG:COG5099 EMBL:AL161512 IPI:IPI00522940
PIR:T01828 RefSeq:NP_192596.1 UniGene:At.54205
ProteinModelPortal:O81465 SMR:O81465 PRIDE:O81465
EnsemblPlants:AT4G08560.1 GeneID:826417 KEGG:ath:AT4G08560
TAIR:At4g08560 InParanoid:O81465 OMA:ENIRREM PhylomeDB:O81465
Genevestigator:O81465 InterPro:IPR010264 Pfam:PF05938
Uniprot:O81465
Length = 477
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 104/310 (33%), Positives = 165/310 (53%)
Query: 236 SYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHL 295
+Y + +R ++ AKD LQ + + I+ I +I + ELM + +
Sbjct: 144 AYGYMYGIRNTLLSRAKDGIESHMLQYVIAKGLKETIDKIFDNLISHVCELMLDYYGHKV 203
Query: 296 IQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQ 355
+KL+ +EQ+T+++ V+ +R+C G+ +Q L+ R ++EQ
Sbjct: 204 FRKLMEKCTDEQITRVLDIVLEEPFEFVRLCVHTHGTHAIQGLM-------RSLCSEEQI 256
Query: 356 SLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLL 415
S + L +++ L+K + VI C +F P +T+ LLE I +NC +A D++GCC+L
Sbjct: 257 SRFMETLCYVSLLLTKDVIAHRVILFCFNQFSPSHTRYLLEVIVQNCYQVAIDQNGCCML 316
Query: 416 QYCIPLAQEEQKARLIADVVANAYVLSEHSYG----------NYVVQYILGLKIPQVTAD 465
+ I + E + LI ++++ A L + YG NYVVQY+L LK +VT+
Sbjct: 317 KKLIRQSSRELRDPLIKEIISIAVRLCGNCYGTLTPKSLLVRNYVVQYLLRLKDYEVTSA 376
Query: 466 VVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVI 525
+ L G Y LS K S+VVQKCL ES E S II E++ +I L++DPYG+YVI
Sbjct: 377 LSKHLDGNYVQLSYDKYGSHVVQKCL-ESREFSSRRIIAELLS--DIDSLLVDPYGDYVI 433
Query: 526 QTAWDVSQGR 535
QTAW VS+ R
Sbjct: 434 QTAWIVSEVR 443
>DICTYBASE|DDB_G0279557 [details] [associations]
symbol:DDB_G0279557 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0279557 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AAFI02000031 eggNOG:COG5099 RefSeq:XP_641698.1
ProteinModelPortal:Q54WL9 EnsemblProtists:DDB0305068 GeneID:8622107
KEGG:ddi:DDB_G0279557 InParanoid:Q54WL9 OMA:STHAANS Uniprot:Q54WL9
Length = 782
Score = 381 (139.2 bits), Expect = 8.9e-33, P = 8.9e-33
Identities = 92/296 (31%), Positives = 165/296 (55%)
Query: 238 SSIEELRGRIILVAKDEQGCRFLQKKVDERNPID-IEMILSEVIDDLHELMRHQSANHLI 296
+S+EE+ G+I + K + GCRFLQKK++E+ + + +I +EV D L+ELM +LI
Sbjct: 466 TSLEEITGQIYHLTKYQAGCRFLQKKLEEKPDSEHVTLIFNEVFDHLNELMIDPYGQYLI 525
Query: 297 QKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQS 356
+L+ + Q +++ + S + C + G +QKLL Q L+ +Q
Sbjct: 526 PQLMKYCDNNQRRQIVDKIAPSVETFA--CH-VYGIHGIQKLL--------QYLSPDQVE 574
Query: 357 LLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQ 416
+++++K + LSK GN++I+ L++F P+ + + + I N ++ T + GC ++
Sbjct: 575 SIIASIKGKVIQLSKDNKGNYLIQSFLKQFSPEVNQFVCDAIMGNIEEICTHKVGCTVVN 634
Query: 417 YCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFA 476
CI A EQ +L+ + ++ L + +GNYVVQ++L K ++ ++ L
Sbjct: 635 RCIDNANPEQLEKLVDKITEHSLKLVQDQFGNYVVQHLLS-KNKAYSSKLIVSLKDNIAE 693
Query: 477 LSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVS 532
LS+ K SSNV++KCL + + + +I + + +I+ L+ D Y N+VIQTA DVS
Sbjct: 694 LSIQKFSSNVIEKCL-QLADTPTYELIIKALTEADILSLLQDKYANFVIQTALDVS 748
>DICTYBASE|DDB_G0279735 [details] [associations]
symbol:pufA "RNA binding protein" species:44689
"Dictyostelium discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 dictyBase:DDB_G0279735
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000032
OMA:FNDSANG RefSeq:XP_641551.1 EnsemblProtists:DDB0233053
GeneID:8622225 KEGG:ddi:DDB_G0279735 InParanoid:Q54WA7
ProtClustDB:CLSZ2846814 Uniprot:Q54WA7
Length = 785
Score = 359 (131.4 bits), Expect = 6.5e-31, Sum P(2) = 6.5e-31
Identities = 89/333 (26%), Positives = 176/333 (52%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ +++G I +KD+ G R +Q+K++ + + +++ EV+ +H LM N+++QK
Sbjct: 457 LSDIKGHIAEFSKDQVGSRIIQQKIENASLEEKQLVFDEVVVAVHSLMTDVFGNYVLQKF 516
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
EQ +++ +S +L + + G RV+QK +++ E ++Q LL+
Sbjct: 517 FEHGTTEQK-RILADKLSGH--ILSLTLQMYGCRVIQKAIESIEL--------DKQILLI 565
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L V +GNHVI++C++K P + +++ + LAT GC ++Q +
Sbjct: 566 GELNGHIVQCVTDQNGNHVIQKCIEKIPTHLIQFIIDSFHGHIYQLATHPYGCRVIQRIL 625
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
E+Q A ++ +++ A L + YGNYV+Q++L P+ + +V +L G+ + LS
Sbjct: 626 EHCAEKQVAPILDELMRCAVSLVQDQYGNYVIQHVLENGTPRDKSAIVCKLQGQIYNLSQ 685
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEII---RHPE----IVQLILDPYGNYVIQTAWDVS 532
K +SNV++KC+ + IINEI+ P +++++ DPY NYVIQ D+
Sbjct: 686 HKFASNVIEKCVQHGCTAERILIINEILGDANSPNSSNVLLKILKDPYANYVIQKILDIV 745
Query: 533 QGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ + R + + + P L+ GK++++++
Sbjct: 746 EPAQ-RDMIINRIQPFVPTLKKVTPGKHIISRI 777
Score = 167 (63.8 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 59/264 (22%), Positives = 118/264 (44%)
Query: 302 VLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSA 361
+L + + K+ L + + + D GSR++Q+ ++ +Q + E +V A
Sbjct: 444 LLEDFRNLKMKLELSDIKGHIAEFSKDQVGSRIIQQKIENASLEEKQLVFDE----VVVA 499
Query: 362 LKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPL 421
+ SL GN+V+++ + + + L ++++ + L L GC ++Q I
Sbjct: 500 VH----SLMTDVFGNYVLQKFFEHGTTEQKRILADKLSGHILSLTLQMYGCRVIQKAIES 555
Query: 422 AQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIP-QVTADVVAQLAGRYFALSLG 480
+ +++ LI ++ + GN+V+Q + KIP + ++ G + L+
Sbjct: 556 IELDKQILLIGELNGHIVQCVTDQNGNHVIQKCIE-KIPTHLIQFIIDSFHGHIYQLATH 614
Query: 481 KCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQT 540
V+Q+ L E+Q I++E++R V L+ D YGNYVIQ + R +
Sbjct: 615 PYGCRVIQRILEHCAEKQVAPILDELMRCA--VSLVQDQYGNYVIQHVLENGTPRD-KSA 671
Query: 541 LYDLVVDNSPFLQSHMYGKNVLAK 564
+ + L H + NV+ K
Sbjct: 672 IVCKLQGQIYNLSQHKFASNVIEK 695
Score = 147 (56.8 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 58/239 (24%), Positives = 110/239 (46%)
Query: 265 DERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLR 324
D RN + +++ LS++ + E + Q + +IQ+ I + E+ + VV + L+
Sbjct: 447 DFRN-LKMKLELSDIKGHIAEFSKDQVGSRIIQQKIENASLEEKQLVFDEVVVAVHSLMT 505
Query: 325 ICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQ 384
D+ G+ V+QK + G T EQ+ +L L +SL+ +G VI++ ++
Sbjct: 506 ---DVFGNYVLQKFFEHG--------TTEQKRILADKLSGHILSLTLQMYGCRVIQKAIE 554
Query: 385 KFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEH 444
D L+ E+ + + TD++G ++Q CI +I + Y L+ H
Sbjct: 555 SIELDKQILLIGELNGHIVQCVTDQNGNHVIQKCIEKIPTHLIQFIIDSFHGHIYQLATH 614
Query: 445 SYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGII 503
YG V+Q IL + A ++ +L +L + + V+Q +LE+G + I
Sbjct: 615 PYGCRVIQRILEHCAEKQVAPILDELMRCAVSLVQDQYGNYVIQH-VLENGTPRDKSAI 672
Score = 142 (55.0 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 60/234 (25%), Positives = 107/234 (45%)
Query: 343 EYPTRQQLTQE----QQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEI 398
EY TR QL ++ + L +S +K SK G+ +I++ ++ + + + +E+
Sbjct: 437 EYTTRSQLLEDFRNLKMKLELSDIKGHIAEFSKDQVGSRIIQQKIENASLEEKQLVFDEV 496
Query: 399 AENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYV-LSEHSYGNYVVQYIL-G 456
L TD G +LQ EQK R++AD ++ + L+ YG V+Q +
Sbjct: 497 VVAVHSLMTDVFGNYVLQKFFEHGTTEQK-RILADKLSGHILSLTLQMYGCRVIQKAIES 555
Query: 457 LKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIR--HPEIVQ 514
+++ + ++ +L G + ++V+QKC+ E+ T +I II H I Q
Sbjct: 556 IELDKQIL-LIGELNGHIVQCVTDQNGNHVIQKCI----EKIPTHLIQFIIDSFHGHIYQ 610
Query: 515 LILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKVRGN 568
L PYG VIQ + +++ L +L+ +Q YG V+ V N
Sbjct: 611 LATHPYGCRVIQRILEHCAEKQVAPILDELMRCAVSLVQDQ-YGNYVIQHVLEN 663
Score = 49 (22.3 bits), Expect = 6.5e-31, Sum P(2) = 6.5e-31
Identities = 20/93 (21%), Positives = 39/93 (41%)
Query: 19 ENNSRHPVTTSQQSHVASQNLHLIPIYQKPNQQDYHVENPSLQNPTTQDQLSGHLHYSNY 78
+++++HPV T S +S H N + N ++ + T + +G+ N
Sbjct: 229 QHHNQHPVVTLSSSPTSSSLSHSPSTIVTLNNNN---SNSNINSNITNNA-TGNNGGMNK 284
Query: 79 PYDKSLAMEPSTCRCRTPESGLSRPSQFAAPRP 111
P S+ + ST +S + P+ + P P
Sbjct: 285 PV--SINLNTSTHSSPNSQSSPNTPNSLSTPTP 315
Score = 44 (20.5 bits), Expect = 2.2e-30, Sum P(2) = 2.2e-30
Identities = 21/79 (26%), Positives = 32/79 (40%)
Query: 20 NNSRHPVTTSQQSHVASQNLHLIPIYQKPN--QQDYHVENPSL----QNPTTQDQLSGH- 72
NN+ + S QN+ L P P+ QQ +H + Q+ Q + H
Sbjct: 176 NNNNNNNNNQYYSSSPQQNIGLSPNSLSPSMIQQHHHHQQQQHHHHHQHHHQQQHHNQHP 235
Query: 73 -LHYSNYPYDKSLAMEPST 90
+ S+ P SL+ PST
Sbjct: 236 VVTLSSSPTSSSLSHSPST 254
Score = 43 (20.2 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 24 HPVTTSQQSH-VASQNLHLIPIY-QKPNQ-QDYHVENPSLQNPT 64
H V SQQ+H V Q ++ Q P Q +++ + L N T
Sbjct: 111 HQVGVSQQTHMVPQQQQQTTSLHHQHPQQIREFQPKRKPLTNNT 154
Score = 42 (19.8 bits), Expect = 3.5e-30, Sum P(2) = 3.5e-30
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 208 HHHLGSSTNASSRYNNFYARARHHHHRTS----YSSIEE 242
HHH S + + R+ HH + YSS+++
Sbjct: 10 HHHQQSHQQQQQQQSQHQQRSSIHHQQPPQYGIYSSLQQ 48
Score = 40 (19.1 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 206 SDHHHLGSSTNASS-----RYNNFYARARHHHHR 234
S ++G S N+ S ++++ + HHHH+
Sbjct: 190 SPQQNIGLSPNSLSPSMIQQHHHHQQQQHHHHHQ 223
Score = 39 (18.8 bits), Expect = 1.3e-30, Sum P(3) = 1.3e-30
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 196 SYSNLSHGFLSDHHHLGSSTNASSRYNNFYARARHHH 232
S ++LS + HHH ++ + + +HH+
Sbjct: 198 SPNSLSPSMIQQHHH--HQQQQHHHHHQHHHQQQHHN 232
Score = 39 (18.8 bits), Expect = 7.3e-30, Sum P(2) = 7.3e-30
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 230 HHHHRTSYSSIEE 242
HHHH+ S+ ++
Sbjct: 9 HHHHQQSHQQQQQ 21
>UNIPROTKB|E2RT57 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 CTD:23369 OMA:LFDYSSQ
EMBL:AAEX03010760 RefSeq:XP_849088.1 Ensembl:ENSCAFT00000006180
GeneID:607618 KEGG:cfa:607618 Uniprot:E2RT57
Length = 1063
Score = 368 (134.6 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 87/331 (26%), Positives = 177/331 (53%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ +L G I+ ++D+ G RF+Q+K++ P + +M+ +E++ ++LM N++IQK
Sbjct: 723 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 782
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ +Q KL L+ + +L + + G RV+QK L++ ++ +QQS +V
Sbjct: 783 FEFGSLDQ--KLALAT-RIRGHVLPLALQMYGCRVIQKALES--------ISSDQQSEMV 831
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 832 KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRIL 891
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
EQ ++ ++ + L + YGNYV+Q++L P+ + +V+++ G+ ALS
Sbjct: 892 EHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQ 951
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEII-----RHPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q D+++
Sbjct: 952 HKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEP 1011
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1012 AQ-RKIIMHKIRPHITTLRKYTYGKHILAKL 1041
Score = 177 (67.4 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 82/354 (23%), Positives = 152/354 (42%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFY--ARARHHH-HRTS--YSSIEEL--RGRI 247
PS S SHG S HLG TN S RY + A A++ TS +SS +L R+
Sbjct: 638 PSLS--SHGS-SSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTSSLFSSSSQLFPPSRL 694
Query: 248 ILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQ 307
D + D RN + L ++I + E + Q + IQ+ + +
Sbjct: 695 RYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAE 754
Query: 308 MTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITV 367
+ ++ + +L+ D+ G+ V+QK + G +Q+ L + ++ +
Sbjct: 755 RQMVFNEILQAAYQLMT---DVFGNYVIQKFFEFGSL--------DQKLALATRIRGHVL 803
Query: 368 SLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQK 427
L+ +G VI++ L+ D ++++E+ + L D++G ++Q CI Q +
Sbjct: 804 PLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSL 863
Query: 428 ARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVV 487
+I +VLS H YG V+Q IL + T ++ +L L + + V+
Sbjct: 864 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 923
Query: 488 QKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTL 541
Q L E + I++EI +++ L + + V++ V+ R + L
Sbjct: 924 QHVLEHGRPEDKSKIVSEI--RGKVLALSQHKFASNVVEKC--VTHASRAERAL 973
Score = 41 (19.5 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 29/105 (27%), Positives = 39/105 (37%)
Query: 20 NNSRHPVTTSQ----QSHVASQNLHLIPIYQKPNQQDYHVENPSLQNPTT---QDQLSGH 72
NN+ + SQ Q V P+ QQ E+ + NPT Q +G
Sbjct: 367 NNTANQQAASQAQPGQQQVLRAGAGQRPLTPNQGQQGQQAESLAAANPTLAFGQGLATGM 426
Query: 73 LHYSNY-P---YDKSLAMEPSTCRCRTPESGLSRPSQFAAPRPPL 113
Y P YD++ A+ RT GL P + AP P L
Sbjct: 427 PGYQVLAPTAYYDQTGALVVGP-GART---GLGAPVRLMAPAPVL 467
Score = 39 (18.8 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 139 PLENHETIDLQSGFDLQSGFEGLNIDGLGLP 169
P E + DL+ G D S I+G GLP
Sbjct: 137 PFEEDQNRDLKQGDDDDS-----KINGRGLP 162
>UNIPROTKB|F1SCU6 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AEMK01186664
EMBL:CU466989 Ensembl:ENSSSCT00000009411 Uniprot:F1SCU6
Length = 1064
Score = 368 (134.6 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 87/331 (26%), Positives = 177/331 (53%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ +L G I+ ++D+ G RF+Q+K++ P + +M+ +E++ ++LM N++IQK
Sbjct: 724 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 783
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ +Q KL L+ + +L + + G RV+QK L++ ++ +QQS +V
Sbjct: 784 FEFGSLDQ--KLALAT-RIRGHVLPLALQMYGCRVIQKALES--------ISSDQQSEMV 832
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 833 KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRIL 892
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
EQ ++ ++ + L + YGNYV+Q++L P+ + +V+++ G+ ALS
Sbjct: 893 EHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQ 952
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEII-----RHPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q D+++
Sbjct: 953 HKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEP 1012
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1013 AQ-RKIIMHKIRPHITTLRKYTYGKHILAKL 1042
Score = 177 (67.4 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 82/354 (23%), Positives = 152/354 (42%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFY--ARARHHH-HRTS--YSSIEEL--RGRI 247
PS S SHG S HLG TN S RY + A A++ TS +SS +L R+
Sbjct: 639 PSLS--SHGS-SSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTSSLFSSSSQLFPPSRL 695
Query: 248 ILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQ 307
D + D RN + L ++I + E + Q + IQ+ + +
Sbjct: 696 RYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAE 755
Query: 308 MTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITV 367
+ ++ + +L+ D+ G+ V+QK + G +Q+ L + ++ +
Sbjct: 756 RQMVFNEILQAAYQLMT---DVFGNYVIQKFFEFGSL--------DQKLALATRIRGHVL 804
Query: 368 SLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQK 427
L+ +G VI++ L+ D ++++E+ + L D++G ++Q CI Q +
Sbjct: 805 PLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSL 864
Query: 428 ARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVV 487
+I +VLS H YG V+Q IL + T ++ +L L + + V+
Sbjct: 865 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 924
Query: 488 QKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTL 541
Q L E + I++EI +++ L + + V++ V+ R + L
Sbjct: 925 QHVLEHGRPEDKSKIVSEI--RGKVLALSQHKFASNVVEKC--VTHASRAERAL 974
Score = 41 (19.5 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 29/105 (27%), Positives = 39/105 (37%)
Query: 20 NNSRHPVTTSQ----QSHVASQNLHLIPIYQKPNQQDYHVENPSLQNPTT---QDQLSGH 72
NN+ + SQ Q V P+ QQ E+ + NPT Q +G
Sbjct: 371 NNTANQQAASQAQPGQQQVLRAGAGQRPLTPNQGQQGQQAESLAAANPTLAFGQGLATGM 430
Query: 73 LHYSNY-P---YDKSLAMEPSTCRCRTPESGLSRPSQFAAPRPPL 113
Y P YD++ A+ RT GL P + AP P L
Sbjct: 431 PGYQVLAPTAYYDQTGALVVGP-GART---GLGAPVRLMAPTPVL 471
Score = 39 (18.8 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 139 PLENHETIDLQSGFDLQSGFEGLNIDGLGLP 169
P E + DL+ G D S I+G GLP
Sbjct: 141 PFEEDQNRDLKQGDDDDS-----KINGRGLP 166
>UNIPROTKB|F1N2B8 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:DAAA02031737
IPI:IPI00703675 Ensembl:ENSBTAT00000014813 Uniprot:F1N2B8
Length = 1069
Score = 368 (134.6 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 87/331 (26%), Positives = 177/331 (53%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ +L G I+ ++D+ G RF+Q+K++ P + +M+ +E++ ++LM N++IQK
Sbjct: 729 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 788
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ +Q KL L+ + +L + + G RV+QK L++ ++ +QQS +V
Sbjct: 789 FEFGSLDQ--KLALAT-RIRGHVLPLALQMYGCRVIQKALES--------ISSDQQSEMV 837
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 838 KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRIL 897
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
EQ ++ ++ + L + YGNYV+Q++L P+ + +V+++ G+ ALS
Sbjct: 898 EHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQ 957
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEII-----RHPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q D+++
Sbjct: 958 HKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEP 1017
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1018 AQ-RKIIMHKIRPHISTLRKYTYGKHILAKL 1047
Score = 176 (67.0 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 80/354 (22%), Positives = 149/354 (42%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARARHHHHRTS-----YSSIEEL--RGRI 247
PS S SHG S HLG TN S RY + A + S +SS +L R+
Sbjct: 644 PSLS--SHGS-SSSLHLGGLTNGSGRYISAAPGAEAKYRSASGTSSLFSSSSQLFPPSRL 700
Query: 248 ILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQ 307
D + D RN + L ++I + E + Q + IQ+ + +
Sbjct: 701 RYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAE 760
Query: 308 MTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITV 367
+ ++ + +L+ D+ G+ V+QK + G +Q+ L + ++ +
Sbjct: 761 RQMVFNEILQAAYQLMT---DVFGNYVIQKFFEFGSL--------DQKLALATRIRGHVL 809
Query: 368 SLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQK 427
L+ +G VI++ L+ D ++++E+ + L D++G ++Q CI Q +
Sbjct: 810 PLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSL 869
Query: 428 ARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVV 487
+I +VLS H YG V+Q IL + T ++ +L L + + V+
Sbjct: 870 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 929
Query: 488 QKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTL 541
Q L E + I++EI +++ L + + V++ V+ R + L
Sbjct: 930 QHVLEHGRPEDKSKIVSEI--RGKVLALSQHKFASNVVEKC--VTHASRAERAL 979
Score = 41 (19.5 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 29/105 (27%), Positives = 39/105 (37%)
Query: 20 NNSRHPVTTSQ----QSHVASQNLHLIPIYQKPNQQDYHVENPSLQNPTT---QDQLSGH 72
NN+ + SQ Q V P+ QQ E+ + NPT Q +G
Sbjct: 373 NNTANQQAASQAQPGQQQVLRAGAGQRPLTPNQGQQGQQAESLAAANPTLAFGQGLATGM 432
Query: 73 LHYSNY-P---YDKSLAMEPSTCRCRTPESGLSRPSQFAAPRPPL 113
Y P YD++ A+ RT GL P + AP P L
Sbjct: 433 PGYQVLAPTAYYDQTGALVVGP-GART---GLGAPVRLMAPTPVL 473
Score = 39 (18.8 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 139 PLENHETIDLQSGFDLQSGFEGLNIDGLGLP 169
P E + DL+ G D S I+G GLP
Sbjct: 141 PFEEDQNRDLKQGDDDDS-----KINGRGLP 166
>UNIPROTKB|B4E2B6 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AC007041
UniGene:Hs.467824 HGNC:HGNC:14958 ChiTaRS:PUM2 EMBL:AK304198
IPI:IPI01009448 SMR:B4E2B6 STRING:B4E2B6 Ensembl:ENST00000536417
UCSC:uc010yjz.1 Uniprot:B4E2B6
Length = 1008
Score = 368 (134.6 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 87/331 (26%), Positives = 177/331 (53%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ +L G I+ ++D+ G RF+Q+K++ P + +M+ +E++ ++LM N++IQK
Sbjct: 668 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 727
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ +Q KL L+ + +L + + G RV+QK L++ ++ +QQS +V
Sbjct: 728 FEFGSLDQ--KLALAT-RIRGHVLPLALQMYGCRVIQKALES--------ISSDQQSEMV 776
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 777 KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRIL 836
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
EQ ++ ++ + L + YGNYV+Q++L P+ + +V+++ G+ ALS
Sbjct: 837 EHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQ 896
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEII-----RHPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q D+++
Sbjct: 897 HKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEP 956
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 957 AQ-RKIIMHKIRPHITTLRKYTYGKHILAKL 986
Score = 177 (67.4 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 82/354 (23%), Positives = 152/354 (42%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFY--ARARHHH-HRTS--YSSIEEL--RGRI 247
PS S SHG S HLG TN S RY + A A++ TS +SS +L R+
Sbjct: 583 PSLS--SHGS-SSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTSSLFSSSSQLFPPSRL 639
Query: 248 ILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQ 307
D + D RN + L ++I + E + Q + IQ+ + +
Sbjct: 640 RYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAE 699
Query: 308 MTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITV 367
+ ++ + +L+ D+ G+ V+QK + G +Q+ L + ++ +
Sbjct: 700 RQMVFNEILQAAYQLMT---DVFGNYVIQKFFEFGSL--------DQKLALATRIRGHVL 748
Query: 368 SLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQK 427
L+ +G VI++ L+ D ++++E+ + L D++G ++Q CI Q +
Sbjct: 749 PLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSL 808
Query: 428 ARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVV 487
+I +VLS H YG V+Q IL + T ++ +L L + + V+
Sbjct: 809 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 868
Query: 488 QKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTL 541
Q L E + I++EI +++ L + + V++ V+ R + L
Sbjct: 869 QHVLEHGRPEDKSKIVSEI--RGKVLALSQHKFASNVVEKC--VTHASRAERAL 918
Score = 39 (18.8 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 139 PLENHETIDLQSGFDLQSGFEGLNIDGLGLP 169
P E + DL+ G D S I+G GLP
Sbjct: 81 PFEEDQNRDLKQGDDDDS-----KINGRGLP 106
>UNIPROTKB|F1NV23 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00735100 Ensembl:ENSGALT00000026590 Uniprot:F1NV23
Length = 1061
Score = 364 (133.2 bits), Expect = 2.0e-30, P = 2.0e-30
Identities = 86/331 (25%), Positives = 177/331 (53%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ +L G I+ ++D+ G RF+Q+K++ P + +M+ +E++ ++LM N++IQK
Sbjct: 721 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 780
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ +Q KL L+ + +L + + G RV+QK L++ ++ +QQ+ +V
Sbjct: 781 FEFGSLDQ--KLALAT-RIRGHVLPLALQMYGCRVIQKALES--------ISPDQQNEMV 829
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 830 KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRIL 889
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
EQ ++ ++ + L + YGNYV+Q++L P+ + +V+++ G+ ALS
Sbjct: 890 EHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQ 949
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEII-----RHPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q D+++
Sbjct: 950 HKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEP 1009
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1010 AQ-RKIIMHKIRPHITTLRKYTYGKHILAKL 1039
Score = 186 (70.5 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 81/354 (22%), Positives = 153/354 (43%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFY--ARARHHHHRTS---YSSIEEL--RGRI 247
PS S SHG S HLG TN S RY + A A++ ++ +SS +L R+
Sbjct: 636 PSLS--SHGS-SSSLHLGGLTNGSGRYISAAPGAEAKYRSAASTSSLFSSTSQLFPPSRL 692
Query: 248 ILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQ 307
D + D RN + L ++I + E + Q + IQ+ + +
Sbjct: 693 RYSRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAE 752
Query: 308 MTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITV 367
+ ++ + +L+ D+ G+ V+QK + G +Q+ L + ++ +
Sbjct: 753 RQMVFNEILQAAYQLMT---DVFGNYVIQKFFEFGSL--------DQKLALATRIRGHVL 801
Query: 368 SLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQK 427
L+ +G VI++ L+ PD ++++E+ + L D++G ++Q CI Q +
Sbjct: 802 PLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSL 861
Query: 428 ARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVV 487
+I +VLS H YG V+Q IL + T ++ +L L + + V+
Sbjct: 862 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 921
Query: 488 QKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTL 541
Q L E + I++EI +++ L + + V++ V+ R + L
Sbjct: 922 QHVLEHGRPEDKSKIVSEI--RGKVLALSQHKFASNVVEKC--VTHASRAERAL 971
>UNIPROTKB|E1BWC0 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0034063 "stress
granule assembly" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00682927 Ensembl:ENSGALT00000026591 Uniprot:E1BWC0
Length = 1062
Score = 364 (133.2 bits), Expect = 2.0e-30, P = 2.0e-30
Identities = 86/331 (25%), Positives = 177/331 (53%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ +L G I+ ++D+ G RF+Q+K++ P + +M+ +E++ ++LM N++IQK
Sbjct: 722 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 781
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ +Q KL L+ + +L + + G RV+QK L++ ++ +QQ+ +V
Sbjct: 782 FEFGSLDQ--KLALAT-RIRGHVLPLALQMYGCRVIQKALES--------ISPDQQNEMV 830
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 831 KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRIL 890
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
EQ ++ ++ + L + YGNYV+Q++L P+ + +V+++ G+ ALS
Sbjct: 891 EHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQ 950
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEII-----RHPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q D+++
Sbjct: 951 HKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEP 1010
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1011 AQ-RKIIMHKIRPHITTLRKYTYGKHILAKL 1040
Score = 186 (70.5 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 81/354 (22%), Positives = 153/354 (43%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFY--ARARHHHHRTS---YSSIEEL--RGRI 247
PS S SHG S HLG TN S RY + A A++ ++ +SS +L R+
Sbjct: 637 PSLS--SHGS-SSSLHLGGLTNGSGRYISAAPGAEAKYRSAASTSSLFSSTSQLFPPSRL 693
Query: 248 ILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQ 307
D + D RN + L ++I + E + Q + IQ+ + +
Sbjct: 694 RYSRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAE 753
Query: 308 MTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITV 367
+ ++ + +L+ D+ G+ V+QK + G +Q+ L + ++ +
Sbjct: 754 RQMVFNEILQAAYQLMT---DVFGNYVIQKFFEFGSL--------DQKLALATRIRGHVL 802
Query: 368 SLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQK 427
L+ +G VI++ L+ PD ++++E+ + L D++G ++Q CI Q +
Sbjct: 803 PLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSL 862
Query: 428 ARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVV 487
+I +VLS H YG V+Q IL + T ++ +L L + + V+
Sbjct: 863 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 922
Query: 488 QKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTL 541
Q L E + I++EI +++ L + + V++ V+ R + L
Sbjct: 923 QHVLEHGRPEDKSKIVSEI--RGKVLALSQHKFASNVVEKC--VTHASRAERAL 972
>TAIR|locus:2076324 [details] [associations]
symbol:PUM4 "pumilio 4" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729 EMBL:AC009400
eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460 InterPro:IPR012940
Pfam:PF07990 EMBL:AK117911 EMBL:BT005311 IPI:IPI00525853
RefSeq:NP_187647.2 UniGene:At.27627 UniGene:At.48643
ProteinModelPortal:Q9SS47 SMR:Q9SS47 PaxDb:Q9SS47 PRIDE:Q9SS47
EnsemblPlants:AT3G10360.1 GeneID:820198 KEGG:ath:AT3G10360
TAIR:At3g10360 InParanoid:Q9SS47 OMA:FKNNKTR PhylomeDB:Q9SS47
Genevestigator:Q9SS47 Uniprot:Q9SS47
Length = 1003
Score = 363 (132.8 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 101/378 (26%), Positives = 188/378 (49%)
Query: 194 SPSYSNLSHGFLSDHHHLG-SSTNASSRYNNFYARARHHHHRTSYSSIEELRGRIILVAK 252
S S + G L H+ ST +S F +++T + E+ G +I +
Sbjct: 621 SASMMKVPFGGLQGSSHVDIGSTAEASLLEGF------KNNKTRSLELSEIVGHVIEFSM 674
Query: 253 DEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLI 312
D+ G RF+Q+K++ + I E++ LM N++IQK +Q +L
Sbjct: 675 DQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKELA 734
Query: 313 LSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKS 372
V +L + + G RV+QK L+ E EQQ+ +V L +
Sbjct: 735 EQVTG---HVLALSLQMYGCRVIQKALEVVEL--------EQQARMVKELDGSVMKCVHD 783
Query: 373 PHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIA 432
+GNHVI++C+++ P D+ + ++ L L+T GC ++Q + + + R+I
Sbjct: 784 QNGNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIM 843
Query: 433 DVVANAY-VLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCL 491
+ + ++ L++ YGNYV+Q+I+ P ++++ +LAG+ +S K +SNVV+KCL
Sbjct: 844 EEIMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCL 903
Query: 492 LESGEEQSTGIINEIIRHP---EIVQLIL-DPYGNYVIQTAWDVSQGRRIRQTLYDLVVD 547
G E+ ++NE++ + E +Q ++ DP+GNYV+Q + + + L + V
Sbjct: 904 TFGGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVH 963
Query: 548 NSPFLQSHMYGKNVLAKV 565
+ L+ + YGK+++A+V
Sbjct: 964 LNA-LKRYTYGKHIVARV 980
>RGD|1311024 [details] [associations]
symbol:Pum2 "pumilio homolog 2 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 RGD:1311024
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
IPI:IPI00950922 Ensembl:ENSRNOT00000064843 ArrayExpress:D4A0R8
Uniprot:D4A0R8
Length = 904
Score = 361 (132.1 bits), Expect = 3.2e-30, P = 3.2e-30
Identities = 87/331 (26%), Positives = 176/331 (53%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ +L G I+ ++D+ G RF+Q+K++ P + +M+ +E++ ++LM N++IQK
Sbjct: 562 LRDLMGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIVQAAYQLMTDVFGNYVIQKF 621
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ +Q KL L+ + +L + + G RV+QK L++ + QQ+ E +V
Sbjct: 622 FEFGSLDQ--KLALAN-RIRGHVLPLALQMYGCRVIQKALES--ISSDQQVISE----MV 672
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 673 KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRIL 732
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
EQ ++ ++ + L + YGNYV+Q++L P+ + +V+++ G+ ALS
Sbjct: 733 EHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQ 792
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEII-----RHPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q D+++
Sbjct: 793 HKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEP 852
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 853 AQ-RKIIMHKIRPHITTLRKYTYGKHILAKL 882
Score = 166 (63.5 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 82/356 (23%), Positives = 152/356 (42%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFY--ARARHHH-HRTS--YSSIEEL--RGRI 247
PS S SHG S HLG TN S RY + A A++ TS +SS +L R+
Sbjct: 477 PSLS--SHGS-SSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTSSLFSSSSQLFPPSRL 533
Query: 248 ILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQ 307
D + D RN + L +++ + E + Q + IQ+ + +
Sbjct: 534 RYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLMGHIVEFSQDQHGSRFIQQKLERATPAE 593
Query: 308 MTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITV 367
+ +V + +L+ D+ G+ V+QK + G +Q+ L + ++ +
Sbjct: 594 RQMVFNEIVQAAYQLMT---DVFGNYVIQKFFEFGSL--------DQKLALANRIRGHVL 642
Query: 368 SLSKSPHGNHVIKRCLQKFPPDYT--KDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEE 425
L+ +G VI++ L+ D ++++E+ + L D++G ++Q CI Q +
Sbjct: 643 PLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQ 702
Query: 426 QKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSN 485
+I +VLS H YG V+Q IL + T ++ +L L + +
Sbjct: 703 SLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNY 762
Query: 486 VVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTL 541
V+Q L E + I++EI +++ L + + V++ V+ R + L
Sbjct: 763 VIQHVLEHGRPEDKSKIVSEI--RGKVLALSQHKFASNVVEKC--VTHASRAERAL 814
>FB|FBgn0003165 [details] [associations]
symbol:pum "pumilio" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=NAS;IDA] [GO:0048477 "oogenesis"
evidence=TAS] [GO:0007280 "pole cell migration" evidence=IMP;TAS]
[GO:0042078 "germ-line stem cell division" evidence=NAS;TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0017148
"negative regulation of translation" evidence=TAS] [GO:0007281
"germ cell development" evidence=TAS] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] [GO:0008258 "head involution"
evidence=IMP] [GO:0007268 "synaptic transmission" evidence=IMP]
[GO:0008595 "anterior/posterior axis specification, embryo"
evidence=TAS] [GO:0007067 "mitosis" evidence=TAS] [GO:0045786
"negative regulation of cell cycle" evidence=TAS] [GO:0016477 "cell
migration" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0007616 "long-term memory"
evidence=IMP;TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0050804
"regulation of synaptic transmission" evidence=IMP] [GO:0008582
"regulation of synaptic growth at neuromuscular junction"
evidence=IDA] [GO:0048149 "behavioral response to ethanol"
evidence=IMP] [GO:0042059 "negative regulation of epidermal growth
factor receptor signaling pathway" evidence=IMP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 EMBL:AE014297 GO:GO:0005737 GO:GO:0045892
GO:GO:0007280 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0007067 GO:GO:0008595 GO:GO:0007616 GO:GO:0048477
GO:GO:0048813 GO:GO:0003730 GO:GO:0045727 GO:GO:0042059
GO:GO:0001709 GO:GO:0045786 GO:GO:0008582 GO:GO:0000288
GO:GO:0000900 GO:GO:0008258 GO:GO:0042078 GO:GO:0050804
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:X62589 EMBL:L07943
EMBL:BT001872 EMBL:BT009970 EMBL:BT021317 PIR:A46221
RefSeq:NP_524285.2 RefSeq:NP_731314.1 RefSeq:NP_731315.1
RefSeq:NP_731316.2 RefSeq:NP_788604.1 UniGene:Dm.1115 PDB:3H3D
PDBsum:3H3D ProteinModelPortal:P25822 SMR:P25822 MINT:MINT-822094
STRING:P25822 PaxDb:P25822 EnsemblMetazoa:FBtr0081990
EnsemblMetazoa:FBtr0081991 EnsemblMetazoa:FBtr0081992
EnsemblMetazoa:FBtr0333667 GeneID:41094 KEGG:dme:Dmel_CG9755
UCSC:CG9755-RA CTD:41094 FlyBase:FBgn0003165 InParanoid:P25822
OMA:LASPTIC OrthoDB:EOG4HMGRT PhylomeDB:P25822
EvolutionaryTrace:P25822 GenomeRNAi:41094 NextBio:822132
Bgee:P25822 GermOnline:CG9755 Uniprot:P25822
Length = 1533
Score = 345 (126.5 bits), Expect = 8.1e-30, Sum P(3) = 8.1e-30
Identities = 85/328 (25%), Positives = 169/328 (51%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ +L I+ ++D+ G RF+Q+K++ + +M+ SE++ + LM N++IQK
Sbjct: 1109 LRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKF 1168
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
EQ L + V + +L++ + G RV+QK L++ ++ EQQ +V
Sbjct: 1169 FEFGTPEQKNTLGMQV---KGHVLQLALQMYGCRVIQKALES--------ISPEQQQEIV 1217
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + ++ L+T GC ++Q +
Sbjct: 1218 HELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRIL 1277
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
EQ ++ ++ + L + YGNYV+Q++L + + ++ + G+ LS
Sbjct: 1278 EHCTAEQTTPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQ 1337
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIRHPE--IVQLILDPYGNYVIQTAWDVSQGRRI 537
K +SNVV+KC+ + + TG+I+E+ + + ++ D Y NYV+Q DVS+ ++
Sbjct: 1338 HKFASNVVEKCVTHATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQL 1397
Query: 538 RQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
++ L + + L+ + YGK++ AK+
Sbjct: 1398 KK-LMTKIRPHMAALRKYTYGKHINAKL 1424
Score = 133 (51.9 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 53/214 (24%), Positives = 86/214 (40%)
Query: 352 QEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSG 411
Q +L + L N V S+ HG+ I++ L++ + + EI L TD G
Sbjct: 1102 QRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFG 1161
Query: 412 CCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLA 471
++Q EQK L V + L+ YG V+Q L P+ ++V +L
Sbjct: 1162 NYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELD 1221
Query: 472 GRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDV 531
G + ++VVQKC+ E + + I + ++ L PYG VIQ +
Sbjct: 1222 GHVLKCVKDQNGNHVVQKCI-ECVDPVALQFIINAFKG-QVYSLSTHPYGCRVIQRILEH 1279
Query: 532 SQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ L +L +Q YG V+ V
Sbjct: 1280 CTAEQTTPILDELHEHTEQLIQDQ-YGNYVIQHV 1312
Score = 55 (24.4 bits), Expect = 8.1e-30, Sum P(3) = 8.1e-30
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 94 RTPESGLSRPSQFAAPRPPLSQYLPYPIPLN 124
RTP S P++ + PRPP + P P+P N
Sbjct: 536 RTPGSRQPSPAEESQPRPP-NLLFP-PLPFN 564
Score = 52 (23.4 bits), Expect = 8.1e-30, Sum P(3) = 8.1e-30
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 29 SQQSHVASQNLHLIPIYQKPNQQDYHVENPSLQNPTTQDQLSGHLHY 75
++ +H+ SQ + Q+ Q H ++P Q Q Q GH H+
Sbjct: 197 AKHNHMISQAAAAVAAQQQ--HQHPHQQHPQQQQQQQQAQNQGHPHH 241
>UNIPROTKB|Q2VB19 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HSSP:Q14671 EMBL:DQ275191 EMBL:AJ851393 IPI:IPI00581936
IPI:IPI00682137 RefSeq:NP_001012858.1 UniGene:Gga.22920
ProteinModelPortal:Q2VB19 SMR:Q2VB19 Ensembl:ENSGALT00000000834
Ensembl:ENSGALT00000035201 GeneID:419554 KEGG:gga:419554 CTD:9698
HOGENOM:HOG000238461 HOVERGEN:HBG049462 InParanoid:Q2VB19
OMA:RHVVGVK OrthoDB:EOG4P8FHP NextBio:20822590 Uniprot:Q2VB19
Length = 1189
Score = 359 (131.4 bits), Expect = 9.3e-30, P = 9.3e-30
Identities = 89/331 (26%), Positives = 172/331 (51%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 906
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ KL L+ + +L + + G RV+QK L+ P QQ+ E +V
Sbjct: 907 FEFGSLEQ--KLALAE-RIRGHVLSLALQMYGCRVIQKALEF--IPPDQQVINE----MV 957
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 958 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 1017
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
EQ ++ ++ + L + YGNYV+Q++L P+ + +VA++ G LS
Sbjct: 1018 EHCLPEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQ 1077
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q DV++
Sbjct: 1078 HKFASNVVEKCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 1137
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1138 AQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 1167
Score = 175 (66.7 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 80/322 (24%), Positives = 137/322 (42%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARAR-HHHHRTSYSSIEELRGRIILVAKD 253
PS S SHG S +LG TN S RY + A + +S SS+ + ++
Sbjct: 762 PSLS--SHGS-SSSLNLGGLTNGSGRYISAAPGAEAKYRSASSASSLFSPSSTLFPSSRL 818
Query: 254 EQGCRFLQKK------VDERNPIDIEMILSEVIDDLHELMRHQSANHLIQ-KLIGVLNEE 306
G + D RN + L E+ + E + Q + IQ KL E
Sbjct: 819 RYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAE 878
Query: 307 QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366
+ +L+ + + Q ++ D+ G+ V+QK + G EQ+ L ++
Sbjct: 879 R--QLVFNEIL--QAAYQLMVDVFGNYVIQKFFEFGSL--------EQKLALAERIRGHV 926
Query: 367 VSLSKSPHGNHVIKRCLQKFPPDYT--KDLLEEIAENCLDLATDRSGCCLLQYCIPLAQE 424
+SL+ +G VI++ L+ PPD +++ E+ + L D++G ++Q CI Q
Sbjct: 927 LSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQP 986
Query: 425 EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSS 484
+ +I + LS H YG V+Q IL +P+ T ++ +L L + +
Sbjct: 987 QSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLPILEELHQHTEQLVQDQYGN 1046
Query: 485 NVVQKCLLESGEEQSTGIINEI 506
V+Q L E + I+ EI
Sbjct: 1047 YVIQHVLEHGRPEDKSKIVAEI 1068
>UNIPROTKB|H0YDK8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000498419 Uniprot:H0YDK8
Length = 900
Score = 357 (130.7 bits), Expect = 9.4e-30, P = 9.4e-30
Identities = 88/331 (26%), Positives = 173/331 (52%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK
Sbjct: 558 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 617
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ KL L+ + +L + + G RV+QK L+ P+ QQ+ E +V
Sbjct: 618 FEFGSLEQ--KLALAE-RIRGHVLSLALQMYGCRVIQKALEF--IPSDQQVINE----MV 668
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 669 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 728
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
+Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G LS
Sbjct: 729 EHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQ 788
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q DV++
Sbjct: 789 HKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 848
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 849 GQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 878
Score = 166 (63.5 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 79/322 (24%), Positives = 135/322 (41%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARAR-HHHHRTSYSSIEELRGRIILVAKD 253
PS S SHG S +LG TN S RY + A + +S SS+ + ++
Sbjct: 473 PSLS--SHGS-SSSLNLGGLTNGSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRL 529
Query: 254 EQGCRFLQKK------VDERNPIDIEMILSEVIDDLHELMRHQSANHLIQ-KLIGVLNEE 306
G + D RN + L E+ + E + Q + IQ KL E
Sbjct: 530 RYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAE 589
Query: 307 QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366
+ +L+ + + Q ++ D+ G+ V+QK + G EQ+ L ++
Sbjct: 590 R--QLVFNEIL--QAAYQLMVDVFGNYVIQKFFEFGSL--------EQKLALAERIRGHV 637
Query: 367 VSLSKSPHGNHVIKRCLQKFPPDYT--KDLLEEIAENCLDLATDRSGCCLLQYCIPLAQE 424
+SL+ +G VI++ L+ P D +++ E+ + L D++G ++Q CI Q
Sbjct: 638 LSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQP 697
Query: 425 EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSS 484
+ +I + LS H YG V+Q IL +P T ++ +L L + +
Sbjct: 698 QSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGN 757
Query: 485 NVVQKCLLESGEEQSTGIINEI 506
V+Q L E + I+ EI
Sbjct: 758 YVIQHVLEHGRPEDKSKIVAEI 779
>UNIPROTKB|F6XHY4 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000017241
OMA:RHVVGVK Ensembl:ENSCAFT00000017823 EMBL:AAEX03001673
Uniprot:F6XHY4
Length = 1162
Score = 358 (131.1 bits), Expect = 1.2e-29, P = 1.2e-29
Identities = 88/331 (26%), Positives = 173/331 (52%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK
Sbjct: 820 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 879
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ KL L+ + +L + + G RV+QK L+ P+ QQ+ E +V
Sbjct: 880 FEFGSLEQ--KLALAE-RIRGHVLSLALQMYGCRVIQKALEF--IPSDQQVINE----MV 930
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 931 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 990
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
+Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G LS
Sbjct: 991 EHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQ 1050
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q DV++
Sbjct: 1051 HKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 1110
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1111 AQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 1140
Score = 166 (63.5 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 79/322 (24%), Positives = 135/322 (41%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARAR-HHHHRTSYSSIEELRGRIILVAKD 253
PS S SHG S +LG TN S RY + A + +S SS+ + ++
Sbjct: 735 PSLS--SHGS-SSSLNLGGLTNGSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRL 791
Query: 254 EQGCRFLQKK------VDERNPIDIEMILSEVIDDLHELMRHQSANHLIQ-KLIGVLNEE 306
G + D RN + L E+ + E + Q + IQ KL E
Sbjct: 792 RYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAE 851
Query: 307 QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366
+ +L+ + + Q ++ D+ G+ V+QK + G EQ+ L ++
Sbjct: 852 R--QLVFNEIL--QAAYQLMVDVFGNYVIQKFFEFGSL--------EQKLALAERIRGHV 899
Query: 367 VSLSKSPHGNHVIKRCLQKFPPDYT--KDLLEEIAENCLDLATDRSGCCLLQYCIPLAQE 424
+SL+ +G VI++ L+ P D +++ E+ + L D++G ++Q CI Q
Sbjct: 900 LSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQP 959
Query: 425 EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSS 484
+ +I + LS H YG V+Q IL +P T ++ +L L + +
Sbjct: 960 QSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGN 1019
Query: 485 NVVQKCLLESGEEQSTGIINEI 506
V+Q L E + I+ EI
Sbjct: 1020 YVIQHVLEHGRPEDKSKIVAEI 1041
>UNIPROTKB|E7EWT3 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00939543 ProteinModelPortal:E7EWT3 SMR:E7EWT3
Ensembl:ENST00000423018 UCSC:uc010oga.1 ArrayExpress:E7EWT3
Bgee:E7EWT3 Uniprot:E7EWT3
Length = 1044
Score = 357 (130.7 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 88/331 (26%), Positives = 173/331 (52%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK
Sbjct: 702 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 761
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ KL L+ + +L + + G RV+QK L+ P+ QQ+ E +V
Sbjct: 762 FEFGSLEQ--KLALAE-RIRGHVLSLALQMYGCRVIQKALEF--IPSDQQVINE----MV 812
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 813 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 872
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
+Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G LS
Sbjct: 873 EHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQ 932
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q DV++
Sbjct: 933 HKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 992
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 993 GQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 1022
Score = 166 (63.5 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 79/322 (24%), Positives = 135/322 (41%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARAR-HHHHRTSYSSIEELRGRIILVAKD 253
PS S SHG S +LG TN S RY + A + +S SS+ + ++
Sbjct: 617 PSLS--SHGS-SSSLNLGGLTNGSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRL 673
Query: 254 EQGCRFLQKK------VDERNPIDIEMILSEVIDDLHELMRHQSANHLIQ-KLIGVLNEE 306
G + D RN + L E+ + E + Q + IQ KL E
Sbjct: 674 RYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAE 733
Query: 307 QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366
+ +L+ + + Q ++ D+ G+ V+QK + G EQ+ L ++
Sbjct: 734 R--QLVFNEIL--QAAYQLMVDVFGNYVIQKFFEFGSL--------EQKLALAERIRGHV 781
Query: 367 VSLSKSPHGNHVIKRCLQKFPPDYT--KDLLEEIAENCLDLATDRSGCCLLQYCIPLAQE 424
+SL+ +G VI++ L+ P D +++ E+ + L D++G ++Q CI Q
Sbjct: 782 LSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQP 841
Query: 425 EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSS 484
+ +I + LS H YG V+Q IL +P T ++ +L L + +
Sbjct: 842 QSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGN 901
Query: 485 NVVQKCLLESGEEQSTGIINEI 506
V+Q L E + I+ EI
Sbjct: 902 YVIQHVLEHGRPEDKSKIVAEI 923
>UNIPROTKB|E2QVA9 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 CTD:9698 RefSeq:XP_852168.1
Ensembl:ENSCAFT00000017823 GeneID:478158 KEGG:cfa:478158
NextBio:20853526 Uniprot:E2QVA9
Length = 1224
Score = 358 (131.1 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 88/331 (26%), Positives = 173/331 (52%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK
Sbjct: 882 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 941
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ KL L+ + +L + + G RV+QK L+ P+ QQ+ E +V
Sbjct: 942 FEFGSLEQ--KLALAE-RIRGHVLSLALQMYGCRVIQKALEF--IPSDQQVINE----MV 992
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 993 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 1052
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
+Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G LS
Sbjct: 1053 EHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQ 1112
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q DV++
Sbjct: 1113 HKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 1172
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1173 AQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 1202
Score = 166 (63.5 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 79/322 (24%), Positives = 135/322 (41%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARAR-HHHHRTSYSSIEELRGRIILVAKD 253
PS S SHG S +LG TN S RY + A + +S SS+ + ++
Sbjct: 797 PSLS--SHGS-SSSLNLGGLTNGSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRL 853
Query: 254 EQGCRFLQKK------VDERNPIDIEMILSEVIDDLHELMRHQSANHLIQ-KLIGVLNEE 306
G + D RN + L E+ + E + Q + IQ KL E
Sbjct: 854 RYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAE 913
Query: 307 QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366
+ +L+ + + Q ++ D+ G+ V+QK + G EQ+ L ++
Sbjct: 914 R--QLVFNEIL--QAAYQLMVDVFGNYVIQKFFEFGSL--------EQKLALAERIRGHV 961
Query: 367 VSLSKSPHGNHVIKRCLQKFPPDYT--KDLLEEIAENCLDLATDRSGCCLLQYCIPLAQE 424
+SL+ +G VI++ L+ P D +++ E+ + L D++G ++Q CI Q
Sbjct: 962 LSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQP 1021
Query: 425 EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSS 484
+ +I + LS H YG V+Q IL +P T ++ +L L + +
Sbjct: 1022 QSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGN 1081
Query: 485 NVVQKCLLESGEEQSTGIINEI 506
V+Q L E + I+ EI
Sbjct: 1082 YVIQHVLEHGRPEDKSKIVAEI 1103
>MGI|MGI:1931751 [details] [associations]
symbol:Pum2 "pumilio 2 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0030425
"dendrite" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO;IDA] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931751 GO:GO:0048471
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0043025 GO:GO:0030425 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000238461 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP CTD:23369
ChiTaRS:PUM2 EMBL:AY027917 EMBL:AF315590 EMBL:AK122225
EMBL:BC013765 EMBL:BC041773 IPI:IPI00112203 IPI:IPI00400191
IPI:IPI00400192 RefSeq:NP_001153691.1 RefSeq:NP_001153694.1
RefSeq:NP_109648.2 UniGene:Mm.341243 PDB:3GVO PDB:3GVT PDBsum:3GVO
PDBsum:3GVT ProteinModelPortal:Q80U58 SMR:Q80U58 IntAct:Q80U58
STRING:Q80U58 PhosphoSite:Q80U58 PaxDb:Q80U58 PRIDE:Q80U58
Ensembl:ENSMUST00000163569 Ensembl:ENSMUST00000168361
Ensembl:ENSMUST00000169089 Ensembl:ENSMUST00000178015 GeneID:80913
KEGG:mmu:80913 UCSC:uc007mzw.2 UCSC:uc007mzy.2 UCSC:uc007naa.2
InParanoid:Q80U58 OMA:LFDYSSQ EvolutionaryTrace:Q80U58
NextBio:350290 Bgee:Q80U58 CleanEx:MM_PUM2 Genevestigator:Q80U58
GermOnline:ENSMUSG00000020594 Uniprot:Q80U58
Length = 1066
Score = 357 (130.7 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 86/331 (25%), Positives = 176/331 (53%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ +L G I+ ++D+ G RF+Q+K++ P + +++ +E++ ++LM N++IQK
Sbjct: 724 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKF 783
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ +Q KL L+ + +L + + G RV+QK L++ + QQ+ E +V
Sbjct: 784 FEFGSLDQ--KLALAT-RIRGHVLPLALQMYGCRVIQKALES--ISSDQQVISE----MV 834
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 835 KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRIL 894
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
EQ ++ ++ + L + YGNYV+Q++L P+ + +V+++ G+ ALS
Sbjct: 895 EHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQ 954
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEII-----RHPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q D+++
Sbjct: 955 HKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEP 1014
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1015 AQ-RKIIMHKIRPHITTLRKYTYGKHILAKL 1044
Score = 167 (63.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 85/358 (23%), Positives = 154/358 (43%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFY--ARARHHH-HRTS--YSSIEEL--RGRI 247
PS S SHG S HLG TN S RY + A A++ TS +SS +L R+
Sbjct: 639 PSLS--SHGS-SSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTSSLFSSSSQLFPPSRL 695
Query: 248 ILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQ 307
D + D RN + L ++I + E + Q + IQ+ + E+
Sbjct: 696 RYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKL-----ER 750
Query: 308 MTKLILSVVSSQ--QRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNI 365
T +V ++ Q ++ D+ G+ V+QK + G +Q+ L + ++
Sbjct: 751 ATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSL--------DQKLALATRIRGH 802
Query: 366 TVSLSKSPHGNHVIKRCLQKFPPDYT--KDLLEEIAENCLDLATDRSGCCLLQYCIPLAQ 423
+ L+ +G VI++ L+ D ++++E+ + L D++G ++Q CI Q
Sbjct: 803 VLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQ 862
Query: 424 EEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCS 483
+ +I +VLS H YG V+Q IL + T ++ +L L +
Sbjct: 863 PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYG 922
Query: 484 SNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTL 541
+ V+Q L E + I++EI +++ L + + V++ V+ R + L
Sbjct: 923 NYVIQHVLEHGRPEDKSKIVSEI--RGKVLALSQHKFASNVVEKC--VTHASRAERAL 976
>UNIPROTKB|Q8TB72 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 EMBL:CH471053 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 HOGENOM:HOG000238461
HOVERGEN:HBG049462 EMBL:AF315591 EMBL:D87078 EMBL:AC007041
EMBL:AK093847 EMBL:BC024218 EMBL:BC112046 EMBL:BC112048
EMBL:AF272350 IPI:IPI00022184 IPI:IPI00398749 IPI:IPI00398750
RefSeq:NP_056132.1 UniGene:Hs.467824 PDB:3Q0Q PDB:3Q0R PDB:3Q0S
PDBsum:3Q0Q PDBsum:3Q0R PDBsum:3Q0S ProteinModelPortal:Q8TB72
SMR:Q8TB72 IntAct:Q8TB72 MINT:MINT-254513 STRING:Q8TB72
PhosphoSite:Q8TB72 DMDM:41688714 PaxDb:Q8TB72 PRIDE:Q8TB72
Ensembl:ENST00000319801 Ensembl:ENST00000338086
Ensembl:ENST00000361078 Ensembl:ENST00000403432
Ensembl:ENST00000440577 GeneID:23369 KEGG:hsa:23369 UCSC:uc002rds.1
CTD:23369 GeneCards:GC02M020448 HGNC:HGNC:14958 HPA:HPA030316
MIM:607205 neXtProt:NX_Q8TB72 PharmGKB:PA34043 InParanoid:Q8TB72
OMA:HITSIPR PhylomeDB:Q8TB72 ChiTaRS:PUM2 EvolutionaryTrace:Q8TB72
GenomeRNAi:23369 NextBio:45440 ArrayExpress:Q8TB72 Bgee:Q8TB72
CleanEx:HS_PUM2 Genevestigator:Q8TB72 GermOnline:ENSG00000055917
Uniprot:Q8TB72
Length = 1066
Score = 361 (132.1 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 87/331 (26%), Positives = 176/331 (53%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ +L G I+ ++D+ G RF+Q+K++ P + +M+ +E++ ++LM N++IQK
Sbjct: 724 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 783
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ +Q KL L+ + +L + + G RV+QK L++ + QQ+ E +V
Sbjct: 784 FEFGSLDQ--KLALAT-RIRGHVLPLALQMYGCRVIQKALES--ISSDQQVISE----MV 834
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 835 KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRIL 894
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
EQ ++ ++ + L + YGNYV+Q++L P+ + +V+++ G+ ALS
Sbjct: 895 EHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQ 954
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEII-----RHPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q D+++
Sbjct: 955 HKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEP 1014
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1015 AQ-RKIIMHKIRPHITTLRKYTYGKHILAKL 1044
Score = 166 (63.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 82/356 (23%), Positives = 152/356 (42%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFY--ARARHHH-HRTS--YSSIEEL--RGRI 247
PS S SHG S HLG TN S RY + A A++ TS +SS +L R+
Sbjct: 639 PSLS--SHGS-SSSLHLGGLTNGSGRYISAAPGAEAKYRSASSTSSLFSSSSQLFPPSRL 695
Query: 248 ILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQ 307
D + D RN + L ++I + E + Q + IQ+ + +
Sbjct: 696 RYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAE 755
Query: 308 MTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITV 367
+ ++ + +L+ D+ G+ V+QK + G +Q+ L + ++ +
Sbjct: 756 RQMVFNEILQAAYQLMT---DVFGNYVIQKFFEFGSL--------DQKLALATRIRGHVL 804
Query: 368 SLSKSPHGNHVIKRCLQKFPPDYT--KDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEE 425
L+ +G VI++ L+ D ++++E+ + L D++G ++Q CI Q +
Sbjct: 805 PLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQ 864
Query: 426 QKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSN 485
+I +VLS H YG V+Q IL + T ++ +L L + +
Sbjct: 865 SLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNY 924
Query: 486 VVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTL 541
V+Q L E + I++EI +++ L + + V++ V+ R + L
Sbjct: 925 VIQHVLEHGRPEDKSKIVSEI--RGKVLALSQHKFASNVVEKC--VTHASRAERAL 976
Score = 39 (18.8 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 139 PLENHETIDLQSGFDLQSGFEGLNIDGLGLP 169
P E + DL+ G D S I+G GLP
Sbjct: 137 PFEEDQNRDLKQGDDDDS-----KINGRGLP 162
>UNIPROTKB|E9PCJ0 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 CTD:9698 EMBL:AL356320 EMBL:AL445235
RefSeq:NP_001018494.1 UniGene:Hs.281707 DNASU:9698 GeneID:9698
KEGG:hsa:9698 HGNC:HGNC:14957 ChiTaRS:PUM1 GenomeRNAi:9698
NextBio:36439 IPI:IPI00941275 ProteinModelPortal:E9PCJ0 SMR:E9PCJ0
Ensembl:ENST00000426105 UCSC:uc001bsh.1 ArrayExpress:E9PCJ0
Bgee:E9PCJ0 Uniprot:E9PCJ0
Length = 1188
Score = 357 (130.7 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 88/331 (26%), Positives = 173/331 (52%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 905
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ KL L+ + +L + + G RV+QK L+ P+ QQ+ E +V
Sbjct: 906 FEFGSLEQ--KLALAE-RIRGHVLSLALQMYGCRVIQKALEF--IPSDQQVINE----MV 956
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 957 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 1016
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
+Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G LS
Sbjct: 1017 EHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQ 1076
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q DV++
Sbjct: 1077 HKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 1136
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1137 GQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 1166
Score = 166 (63.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 79/322 (24%), Positives = 135/322 (41%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARAR-HHHHRTSYSSIEELRGRIILVAKD 253
PS S SHG S +LG TN S RY + A + +S SS+ + ++
Sbjct: 761 PSLS--SHGS-SSSLNLGGLTNGSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRL 817
Query: 254 EQGCRFLQKK------VDERNPIDIEMILSEVIDDLHELMRHQSANHLIQ-KLIGVLNEE 306
G + D RN + L E+ + E + Q + IQ KL E
Sbjct: 818 RYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAE 877
Query: 307 QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366
+ +L+ + + Q ++ D+ G+ V+QK + G EQ+ L ++
Sbjct: 878 R--QLVFNEIL--QAAYQLMVDVFGNYVIQKFFEFGSL--------EQKLALAERIRGHV 925
Query: 367 VSLSKSPHGNHVIKRCLQKFPPDYT--KDLLEEIAENCLDLATDRSGCCLLQYCIPLAQE 424
+SL+ +G VI++ L+ P D +++ E+ + L D++G ++Q CI Q
Sbjct: 926 LSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQP 985
Query: 425 EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSS 484
+ +I + LS H YG V+Q IL +P T ++ +L L + +
Sbjct: 986 QSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGN 1045
Query: 485 NVVQKCLLESGEEQSTGIINEI 506
V+Q L E + I+ EI
Sbjct: 1046 YVIQHVLEHGRPEDKSKIVAEI 1067
>UNIPROTKB|Q5T1Z4 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461 HOVERGEN:HBG049462
OrthoDB:EOG4P8FHP EMBL:AL356320 EMBL:AL445235 UniGene:Hs.281707
HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00646054 SMR:Q5T1Z4
STRING:Q5T1Z4 Ensembl:ENST00000373747 UCSC:uc001bsf.1
Uniprot:Q5T1Z4
Length = 1189
Score = 357 (130.7 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 88/331 (26%), Positives = 173/331 (52%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 906
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ KL L+ + +L + + G RV+QK L+ P+ QQ+ E +V
Sbjct: 907 FEFGSLEQ--KLALAE-RIRGHVLSLALQMYGCRVIQKALEF--IPSDQQVINE----MV 957
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 958 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 1017
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
+Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G LS
Sbjct: 1018 EHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQ 1077
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q DV++
Sbjct: 1078 HKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 1137
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1138 GQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 1167
Score = 166 (63.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 79/322 (24%), Positives = 135/322 (41%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARAR-HHHHRTSYSSIEELRGRIILVAKD 253
PS S SHG S +LG TN S RY + A + +S SS+ + ++
Sbjct: 762 PSLS--SHGS-SSSLNLGGLTNGSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRL 818
Query: 254 EQGCRFLQKK------VDERNPIDIEMILSEVIDDLHELMRHQSANHLIQ-KLIGVLNEE 306
G + D RN + L E+ + E + Q + IQ KL E
Sbjct: 819 RYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAE 878
Query: 307 QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366
+ +L+ + + Q ++ D+ G+ V+QK + G EQ+ L ++
Sbjct: 879 R--QLVFNEIL--QAAYQLMVDVFGNYVIQKFFEFGSL--------EQKLALAERIRGHV 926
Query: 367 VSLSKSPHGNHVIKRCLQKFPPDYT--KDLLEEIAENCLDLATDRSGCCLLQYCIPLAQE 424
+SL+ +G VI++ L+ P D +++ E+ + L D++G ++Q CI Q
Sbjct: 927 LSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQP 986
Query: 425 EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSS 484
+ +I + LS H YG V+Q IL +P T ++ +L L + +
Sbjct: 987 QSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGN 1046
Query: 485 NVVQKCLLESGEEQSTGIINEI 506
V+Q L E + I+ EI
Sbjct: 1047 YVIQHVLEHGRPEDKSKIVAEI 1068
>UNIPROTKB|F1STL2 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:CU928875
Ensembl:ENSSSCT00000003986 OMA:ANHVVEF Uniprot:F1STL2
Length = 735
Score = 353 (129.3 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 87/331 (26%), Positives = 173/331 (52%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK
Sbjct: 395 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 454
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ KL L+ + +L + + G RV+QK L E+ + +QQ+ +V
Sbjct: 455 FEFGSLEQ--KLALAE-RIRGHVLSLALQMYGCRVIQKAL---EF-----IPSDQQNEMV 503
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 504 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 563
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
+Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G LS
Sbjct: 564 EHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQ 623
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q DV++
Sbjct: 624 HKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 683
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 684 AQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 713
Score = 177 (67.4 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 79/320 (24%), Positives = 135/320 (42%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARAR-HHHHRTSYSSIEELRGRIILVAKD 253
PS S SHG S +LG TN S RY + A + +S SS+ + ++
Sbjct: 310 PSLS--SHGS-SSSLNLGGLTNGSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRL 366
Query: 254 EQGCRFLQKK------VDERNPIDIEMILSEVIDDLHELMRHQSANHLIQ-KLIGVLNEE 306
G + D RN + L E+ + E + Q + IQ KL E
Sbjct: 367 RYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAE 426
Query: 307 QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366
+ +L+ + + Q ++ D+ G+ V+QK + G EQ+ L ++
Sbjct: 427 R--QLVFNEIL--QAAYQLMVDVFGNYVIQKFFEFGSL--------EQKLALAERIRGHV 474
Query: 367 VSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQ 426
+SL+ +G VI++ L+ P D +++ E+ + L D++G ++Q CI Q +
Sbjct: 475 LSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQS 534
Query: 427 KARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNV 486
+I + LS H YG V+Q IL +P T ++ +L L + + V
Sbjct: 535 LQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYV 594
Query: 487 VQKCLLESGEEQSTGIINEI 506
+Q L E + I+ EI
Sbjct: 595 IQHVLEHGRPEDKSKIVAEI 614
>UNIPROTKB|Q5T1Z8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1 (Drosophila), isoform CRA_c"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00032355
SMR:Q5T1Z8 STRING:Q5T1Z8 Ensembl:ENST00000373741 UCSC:uc001bsk.1
Uniprot:Q5T1Z8
Length = 1224
Score = 357 (130.7 bits), Expect = 1.7e-29, P = 1.7e-29
Identities = 88/331 (26%), Positives = 173/331 (52%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK
Sbjct: 882 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 941
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ KL L+ + +L + + G RV+QK L+ P+ QQ+ E +V
Sbjct: 942 FEFGSLEQ--KLALAE-RIRGHVLSLALQMYGCRVIQKALEF--IPSDQQVINE----MV 992
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 993 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 1052
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
+Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G LS
Sbjct: 1053 EHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQ 1112
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q DV++
Sbjct: 1113 HKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 1172
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1173 GQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 1202
Score = 166 (63.5 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 79/322 (24%), Positives = 135/322 (41%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARAR-HHHHRTSYSSIEELRGRIILVAKD 253
PS S SHG S +LG TN S RY + A + +S SS+ + ++
Sbjct: 797 PSLS--SHGS-SSSLNLGGLTNGSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRL 853
Query: 254 EQGCRFLQKK------VDERNPIDIEMILSEVIDDLHELMRHQSANHLIQ-KLIGVLNEE 306
G + D RN + L E+ + E + Q + IQ KL E
Sbjct: 854 RYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAE 913
Query: 307 QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366
+ +L+ + + Q ++ D+ G+ V+QK + G EQ+ L ++
Sbjct: 914 R--QLVFNEIL--QAAYQLMVDVFGNYVIQKFFEFGSL--------EQKLALAERIRGHV 961
Query: 367 VSLSKSPHGNHVIKRCLQKFPPDYT--KDLLEEIAENCLDLATDRSGCCLLQYCIPLAQE 424
+SL+ +G VI++ L+ P D +++ E+ + L D++G ++Q CI Q
Sbjct: 962 LSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQP 1021
Query: 425 EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSS 484
+ +I + LS H YG V+Q IL +P T ++ +L L + +
Sbjct: 1022 QSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGN 1081
Query: 485 NVVQKCLLESGEEQSTGIINEI 506
V+Q L E + I+ EI
Sbjct: 1082 YVIQHVLEHGRPEDKSKIVAEI 1103
>UNIPROTKB|E9PR38 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00909786 ProteinModelPortal:E9PR38 SMR:E9PR38
Ensembl:ENST00000424085 ArrayExpress:E9PR38 Bgee:E9PR38
Uniprot:E9PR38
Length = 944
Score = 352 (129.0 bits), Expect = 3.9e-29, P = 3.9e-29
Identities = 87/331 (26%), Positives = 173/331 (52%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK
Sbjct: 604 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 663
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ KL L+ + +L + + G RV+QK L E+ + +QQ+ +V
Sbjct: 664 FEFGSLEQ--KLALAE-RIRGHVLSLALQMYGCRVIQKAL---EF-----IPSDQQNEMV 712
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 713 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 772
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
+Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G LS
Sbjct: 773 EHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQ 832
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q DV++
Sbjct: 833 HKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 892
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 893 GQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 922
Score = 177 (67.4 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 79/320 (24%), Positives = 135/320 (42%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARAR-HHHHRTSYSSIEELRGRIILVAKD 253
PS S SHG S +LG TN S RY + A + +S SS+ + ++
Sbjct: 519 PSLS--SHGS-SSSLNLGGLTNGSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRL 575
Query: 254 EQGCRFLQKK------VDERNPIDIEMILSEVIDDLHELMRHQSANHLIQ-KLIGVLNEE 306
G + D RN + L E+ + E + Q + IQ KL E
Sbjct: 576 RYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAE 635
Query: 307 QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366
+ +L+ + + Q ++ D+ G+ V+QK + G EQ+ L ++
Sbjct: 636 R--QLVFNEIL--QAAYQLMVDVFGNYVIQKFFEFGSL--------EQKLALAERIRGHV 683
Query: 367 VSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQ 426
+SL+ +G VI++ L+ P D +++ E+ + L D++G ++Q CI Q +
Sbjct: 684 LSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQS 743
Query: 427 KARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNV 486
+I + LS H YG V+Q IL +P T ++ +L L + + V
Sbjct: 744 LQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYV 803
Query: 487 VQKCLLESGEEQSTGIINEI 506
+Q L E + I+ EI
Sbjct: 804 IQHVLEHGRPEDKSKIVAEI 823
>UNIPROTKB|E1BE82 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 CTD:9698 OMA:RHVVGVK
EMBL:DAAA02006263 EMBL:DAAA02006264 EMBL:DAAA02006265
IPI:IPI00713931 RefSeq:NP_001180052.1 UniGene:Bt.44441
Ensembl:ENSBTAT00000025262 GeneID:535450 KEGG:bta:535450
NextBio:20876753 Uniprot:E1BE82
Length = 1186
Score = 353 (129.3 bits), Expect = 4.5e-29, P = 4.5e-29
Identities = 87/331 (26%), Positives = 173/331 (52%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 905
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ KL L+ + +L + + G RV+QK L E+ + +QQ+ +V
Sbjct: 906 FEFGSLEQ--KLALAE-RIRGHVLSLALQMYGCRVIQKAL---EF-----IPSDQQNEMV 954
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 955 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 1014
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
+Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G LS
Sbjct: 1015 EHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQ 1074
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q DV++
Sbjct: 1075 HKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 1134
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1135 AQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 1164
Score = 177 (67.4 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 79/320 (24%), Positives = 135/320 (42%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARAR-HHHHRTSYSSIEELRGRIILVAKD 253
PS S SHG S +LG TN S RY + A + +S SS+ + ++
Sbjct: 761 PSLS--SHGS-SSSLNLGGLTNGSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRL 817
Query: 254 EQGCRFLQKK------VDERNPIDIEMILSEVIDDLHELMRHQSANHLIQ-KLIGVLNEE 306
G + D RN + L E+ + E + Q + IQ KL E
Sbjct: 818 RYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAE 877
Query: 307 QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366
+ +L+ + + Q ++ D+ G+ V+QK + G EQ+ L ++
Sbjct: 878 R--QLVFNEIL--QAAYQLMVDVFGNYVIQKFFEFGSL--------EQKLALAERIRGHV 925
Query: 367 VSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQ 426
+SL+ +G VI++ L+ P D +++ E+ + L D++G ++Q CI Q +
Sbjct: 926 LSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQS 985
Query: 427 KARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNV 486
+I + LS H YG V+Q IL +P T ++ +L L + + V
Sbjct: 986 LQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYV 1045
Query: 487 VQKCLLESGEEQSTGIINEI 506
+Q L E + I+ EI
Sbjct: 1046 IQHVLEHGRPEDKSKIVAEI 1065
>UNIPROTKB|H0YEH2 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525843 Uniprot:H0YEH2
Length = 1125
Score = 352 (129.0 bits), Expect = 5.4e-29, P = 5.4e-29
Identities = 87/331 (26%), Positives = 173/331 (52%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK
Sbjct: 785 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 844
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ KL L+ + +L + + G RV+QK L E+ + +QQ+ +V
Sbjct: 845 FEFGSLEQ--KLALAE-RIRGHVLSLALQMYGCRVIQKAL---EF-----IPSDQQNEMV 893
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 894 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 953
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
+Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G LS
Sbjct: 954 EHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQ 1013
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q DV++
Sbjct: 1014 HKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 1073
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1074 GQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 1103
>UNIPROTKB|B4DG92 [details] [associations]
symbol:PUM1 "cDNA FLJ56067, highly similar to Pumilio
homolog 1" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
HOGENOM:HOG000238461 HOVERGEN:HBG049462 EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 EMBL:AK294477
IPI:IPI00939543 SMR:B4DG92 STRING:B4DG92 Ensembl:ENST00000373742
UCSC:uc010ogb.1 Uniprot:B4DG92
Length = 1127
Score = 352 (129.0 bits), Expect = 5.4e-29, P = 5.4e-29
Identities = 87/331 (26%), Positives = 173/331 (52%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK
Sbjct: 787 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 846
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ KL L+ + +L + + G RV+QK L E+ + +QQ+ +V
Sbjct: 847 FEFGSLEQ--KLALAE-RIRGHVLSLALQMYGCRVIQKAL---EF-----IPSDQQNEMV 895
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 896 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 955
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
+Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G LS
Sbjct: 956 EHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQ 1015
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q DV++
Sbjct: 1016 HKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 1075
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1076 GQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 1105
Score = 177 (67.4 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 79/320 (24%), Positives = 135/320 (42%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARAR-HHHHRTSYSSIEELRGRIILVAKD 253
PS S SHG S +LG TN S RY + A + +S SS+ + ++
Sbjct: 702 PSLS--SHGS-SSSLNLGGLTNGSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRL 758
Query: 254 EQGCRFLQKK------VDERNPIDIEMILSEVIDDLHELMRHQSANHLIQ-KLIGVLNEE 306
G + D RN + L E+ + E + Q + IQ KL E
Sbjct: 759 RYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAE 818
Query: 307 QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366
+ +L+ + + Q ++ D+ G+ V+QK + G EQ+ L ++
Sbjct: 819 R--QLVFNEIL--QAAYQLMVDVFGNYVIQKFFEFGSL--------EQKLALAERIRGHV 866
Query: 367 VSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQ 426
+SL+ +G VI++ L+ P D +++ E+ + L D++G ++Q CI Q +
Sbjct: 867 LSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQS 926
Query: 427 KARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNV 486
+I + LS H YG V+Q IL +P T ++ +L L + + V
Sbjct: 927 LQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYV 986
Query: 487 VQKCLLESGEEQSTGIINEI 506
+Q L E + I+ EI
Sbjct: 987 IQHVLEHGRPEDKSKIVAEI 1006
>UNIPROTKB|Q14671 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS]
[GO:0016044 "cellular membrane organization" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005829 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 GO:GO:0016044
GO:GO:0006892 eggNOG:COG5099 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AF315592 EMBL:D43951
EMBL:AL356320 EMBL:AL445235 EMBL:AK291779 EMBL:BC013398
IPI:IPI00551014 IPI:IPI00941189 RefSeq:NP_001018494.1
RefSeq:NP_055491.1 UniGene:Hs.281707 PDB:1IB2 PDB:1M8W PDB:1M8X
PDB:1M8Y PDB:1M8Z PDB:2YJY PDB:3BSB PDB:3BSX PDB:3Q0L PDB:3Q0M
PDB:3Q0N PDB:3Q0O PDB:3Q0P PDBsum:1IB2 PDBsum:1M8W PDBsum:1M8X
PDBsum:1M8Y PDBsum:1M8Z PDBsum:2YJY PDBsum:3BSB PDBsum:3BSX
PDBsum:3Q0L PDBsum:3Q0M PDBsum:3Q0N PDBsum:3Q0O PDBsum:3Q0P
ProteinModelPortal:Q14671 SMR:Q14671 DIP:DIP-29082N IntAct:Q14671
MINT:MINT-1199500 STRING:Q14671 PhosphoSite:Q14671 DMDM:41688619
UCD-2DPAGE:Q14671 PaxDb:Q14671 PRIDE:Q14671 DNASU:9698
Ensembl:ENST00000257075 Ensembl:ENST00000440538 GeneID:9698
KEGG:hsa:9698 UCSC:uc001bsi.1 UCSC:uc001bsj.1 GeneCards:GC01M031405
HGNC:HGNC:14957 HPA:HPA027424 MIM:607204 neXtProt:NX_Q14671
PharmGKB:PA34042 PhylomeDB:Q14671 ChiTaRS:PUM1
EvolutionaryTrace:Q14671 GenomeRNAi:9698 NextBio:36439
ArrayExpress:Q14671 Bgee:Q14671 CleanEx:HS_PUM1
Genevestigator:Q14671 GermOnline:ENSG00000134644 Uniprot:Q14671
Length = 1186
Score = 352 (129.0 bits), Expect = 5.9e-29, P = 5.9e-29
Identities = 87/331 (26%), Positives = 173/331 (52%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 905
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ KL L+ + +L + + G RV+QK L E+ + +QQ+ +V
Sbjct: 906 FEFGSLEQ--KLALAE-RIRGHVLSLALQMYGCRVIQKAL---EF-----IPSDQQNEMV 954
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 955 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 1014
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
+Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G LS
Sbjct: 1015 EHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQ 1074
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q DV++
Sbjct: 1075 HKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 1134
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1135 GQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 1164
Score = 177 (67.4 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 79/320 (24%), Positives = 135/320 (42%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARAR-HHHHRTSYSSIEELRGRIILVAKD 253
PS S SHG S +LG TN S RY + A + +S SS+ + ++
Sbjct: 761 PSLS--SHGS-SSSLNLGGLTNGSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRL 817
Query: 254 EQGCRFLQKK------VDERNPIDIEMILSEVIDDLHELMRHQSANHLIQ-KLIGVLNEE 306
G + D RN + L E+ + E + Q + IQ KL E
Sbjct: 818 RYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAE 877
Query: 307 QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366
+ +L+ + + Q ++ D+ G+ V+QK + G EQ+ L ++
Sbjct: 878 R--QLVFNEIL--QAAYQLMVDVFGNYVIQKFFEFGSL--------EQKLALAERIRGHV 925
Query: 367 VSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQ 426
+SL+ +G VI++ L+ P D +++ E+ + L D++G ++Q CI Q +
Sbjct: 926 LSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQS 985
Query: 427 KARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNV 486
+I + LS H YG V+Q IL +P T ++ +L L + + V
Sbjct: 986 LQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYV 1045
Query: 487 VQKCLLESGEEQSTGIINEI 506
+Q L E + I+ EI
Sbjct: 1046 IQHVLEHGRPEDKSKIVAEI 1065
>MGI|MGI:1931749 [details] [associations]
symbol:Pum1 "pumilio 1 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931749
GO:GO:0005737 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099
GeneTree:ENSGT00390000017241 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK OrthoDB:EOG4P8FHP ChiTaRS:PUM1
EMBL:AF321909 EMBL:AK122205 EMBL:AK052145 EMBL:BC048174
EMBL:BC050747 IPI:IPI00330262 IPI:IPI00400349 IPI:IPI00400350
IPI:IPI00400351 RefSeq:NP_001153075.1 RefSeq:NP_001153076.1
RefSeq:NP_001153077.1 RefSeq:NP_001153078.1 RefSeq:NP_109647.2
UniGene:Mm.440206 ProteinModelPortal:Q80U78 SMR:Q80U78
IntAct:Q80U78 STRING:Q80U78 PhosphoSite:Q80U78 PaxDb:Q80U78
PRIDE:Q80U78 Ensembl:ENSMUST00000030315 Ensembl:ENSMUST00000097862
Ensembl:ENSMUST00000097864 GeneID:80912 KEGG:mmu:80912
UCSC:uc008uzl.2 InParanoid:Q80U78 NextBio:350286 Bgee:Q80U78
CleanEx:MM_PUM1 Genevestigator:Q80U78 Uniprot:Q80U78
Length = 1189
Score = 352 (129.0 bits), Expect = 5.9e-29, P = 5.9e-29
Identities = 87/331 (26%), Positives = 172/331 (51%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ + +++ +E++ ++LM N++IQK
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKF 906
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ KL L+ + +L + + G RV+QK L+ P+ QQ+ E +V
Sbjct: 907 FEFGSHEQ--KLALAE-RIRGHVLSLALQMYGCRVIQKALEF--IPSDQQVINE----MV 957
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 958 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 1017
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
+Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G LS
Sbjct: 1018 EHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQ 1077
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q DV++
Sbjct: 1078 HKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 1137
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1138 GQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 1167
Score = 187 (70.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 61/239 (25%), Positives = 115/239 (48%)
Query: 233 HRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDL--HEL--MR 288
H + E +RG ++ +A GCR +QK + E P D + +++E++ +L H L ++
Sbjct: 912 HEQKLALAERIRGHVLSLALQMYGCRVIQKAL-EFIPSD-QQVINEMVRELDGHVLKCVK 969
Query: 289 HQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQ 348
Q+ NH++QK I + + Q + I+ Q + + G RV+Q++L+
Sbjct: 970 DQNGNHVVQKCIECV-QPQSLQFIIDAFKGQ--VFALSTHPYGCRVIQRILE-------- 1018
Query: 349 QLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATD 408
+Q ++ L T L + +GN+VI+ L+ P+ ++ EI N L L+
Sbjct: 1019 HCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQH 1078
Query: 409 RSGCCLLQYCIPLAQEEQKARLIADVVA-N------AYVLSEHSYGNYVVQYILGLKIP 460
+ +++ C+ A ++A LI +V N Y + + Y NYVVQ ++ + P
Sbjct: 1079 KFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 1137
Score = 169 (64.5 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 79/322 (24%), Positives = 136/322 (42%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARAR-HHHHRTSYSSIEELRGRIILVAKD 253
PS S SHG S +LG TN S RY + A + +S SS+ + ++
Sbjct: 762 PSLS--SHGS-SSSLNLGGLTNGSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRL 818
Query: 254 EQGCRFLQKK------VDERNPIDIEMILSEVIDDLHELMRHQSANHLIQ-KLIGVLNEE 306
G + D RN + L E+ + E + Q + IQ KL E
Sbjct: 819 RYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAE 878
Query: 307 QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366
+ +L+ + + Q ++ D+ G+ V+QK + G + EQ+ L ++
Sbjct: 879 R--QLVFNEIL--QAAYQLMVDVFGNYVIQKFFEFGSH--------EQKLALAERIRGHV 926
Query: 367 VSLSKSPHGNHVIKRCLQKFPPDYT--KDLLEEIAENCLDLATDRSGCCLLQYCIPLAQE 424
+SL+ +G VI++ L+ P D +++ E+ + L D++G ++Q CI Q
Sbjct: 927 LSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQP 986
Query: 425 EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSS 484
+ +I + LS H YG V+Q IL +P T ++ +L L + +
Sbjct: 987 QSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGN 1046
Query: 485 NVVQKCLLESGEEQSTGIINEI 506
V+Q L E + I+ EI
Sbjct: 1047 YVIQHVLEHGRPEDKSKIVAEI 1068
>CGD|CAL0000028 [details] [associations]
symbol:MPT5 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:1900153 "positive
regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0030674 "protein binding, bridging"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 CGD:CAL0000028
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG5099
RefSeq:XP_722196.1 RefSeq:XP_722310.1 ProteinModelPortal:Q5AKY7
GeneID:3636032 GeneID:3636205 KEGG:cal:CaO19.12458
KEGG:cal:CaO19.4991 Uniprot:Q5AKY7
Length = 938
Score = 350 (128.3 bits), Expect = 6.4e-29, Sum P(2) = 6.4e-29
Identities = 98/312 (31%), Positives = 161/312 (51%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERN-P------IDIEMILSEVIDDLHELMRHQSA 292
+ +L+ I+ +AKD+ GCRFLQKK+DE P + E+I +++ ++EL+
Sbjct: 279 LTQLKSEILKLAKDQYGCRFLQKKIDESLVPNYQVRLANFEIIFNQIYSHVYELIVDPFG 338
Query: 293 NHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQ 352
N+LIQKLI NE + L++ ++ Q L +I + G+R +QK++D+
Sbjct: 339 NYLIQKLIVYCNESNLD-LLMEIL--QYNLFQISINQHGTRALQKIIDSLN-------NS 388
Query: 353 EQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGC 412
Q LL+ LK + L K +GNHVI++ L K+ P + + + I ++ +AT + GC
Sbjct: 389 HQLGLLIKGLKPYIIELIKDLNGNHVIQKILNKYEPPDCQFIYDSIIDDLYIVATHKHGC 448
Query: 413 CLLQYC---IPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQ 469
C+LQ C + L Q + +R I N +L +GNYV+QY++ + + +
Sbjct: 449 CVLQKCLNHVTLQQLGEFSRAILKF-ENFKLLINDQFGNYVLQYLISINSLDINFQIFQN 507
Query: 470 LAGRYFA-LSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLIL---------DP 519
+ L K SSNVV+K L +S + ++ E++ +IL DP
Sbjct: 508 FVNFGISNLCNLKFSSNVVEKFLKNCYANESVNVSFSNLKF-ELIYIILVSDLNVLINDP 566
Query: 520 YGNYVIQTAWDV 531
YGNYVIQT D+
Sbjct: 567 YGNYVIQTMIDI 578
Score = 150 (57.9 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 56/221 (25%), Positives = 98/221 (44%)
Query: 308 MTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITV 367
+ KL L+ + S+ +L++ D G R +QK +D P Q+ ++ + + +
Sbjct: 274 INKLPLTQLKSE--ILKLAKDQYGCRFLQKKIDESLVPN-YQVRLANFEIIFNQIYSHVY 330
Query: 368 SLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAE-NCLDLATDRSGCCLLQYCIP-LAQEE 425
L P GN++I++ + + + DLL EI + N ++ ++ G LQ I L
Sbjct: 331 ELIVDPFGNYLIQKLIV-YCNESNLDLLMEILQYNLFQISINQHGTRALQKIIDSLNNSH 389
Query: 426 QKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSN 485
Q LI + L + GN+V+Q IL P + + + ++ K
Sbjct: 390 QLGLLIKGLKPYIIELIKDLNGNHVIQKILNKYEPPDCQFIYDSIIDDLYIVATHKHGCC 449
Query: 486 VVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQ 526
V+QKCL +Q I++ LI D +GNYV+Q
Sbjct: 450 VLQKCLNHVTLQQLGEFSRAILKFENFKLLINDQFGNYVLQ 490
Score = 130 (50.8 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 48/193 (24%), Positives = 89/193 (46%)
Query: 384 QKFPPDYTKDL----LEEIAENCLDLATDRSGCCLLQYCIP--LAQEEQKARLIADVVAN 437
QK +Y + L ++ L LA D+ GC LQ I L Q +++ N
Sbjct: 264 QKIDKEYLASINKLPLTQLKSEILKLAKDQYGCRFLQKKIDESLVPNYQVRLANFEIIFN 323
Query: 438 -----AYVLSEHSYGNYVVQYILGLKIPQVTADVVAQ-LAGRYFALSLGKCSSNVVQKCL 491
Y L +GNY++Q ++ + + D++ + L F +S+ + + +QK +
Sbjct: 324 QIYSHVYELIVDPFGNYLIQKLI-VYCNESNLDLLMEILQYNLFQISINQHGTRALQKII 382
Query: 492 LESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPF 551
G++ + ++ P I++LI D GN+VIQ + + Q +YD ++D+
Sbjct: 383 DSLNNSHQLGLLIKGLK-PYIIELIKDLNGNHVIQKILNKYEPPDC-QFIYDSIIDDLYI 440
Query: 552 LQSHMYGKNVLAK 564
+ +H +G VL K
Sbjct: 441 VATHKHGCCVLQK 453
Score = 44 (20.5 bits), Expect = 6.4e-29, Sum P(2) = 6.4e-29
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 222 NNFYARARH--HHHRTSYSSIEE 242
NNFY RH +H S SSI E
Sbjct: 12 NNFYHPPRHSQNHSINSLSSIIE 34
>WB|WBGene00004244 [details] [associations]
symbol:puf-8 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0007276 "gamete
generation" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0040022 "feminization of hermaphroditic
germ-line" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007140 "male meiosis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0007283 GO:GO:0003723
GO:GO:0042127 GO:GO:0007140 GO:GO:0040027 GO:GO:0040020
GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00680000100664 EMBL:FO080733 PIR:T15717
RefSeq:NP_495523.3 ProteinModelPortal:Q09487 SMR:Q09487
DIP:DIP-27165N MINT:MINT-1110716 STRING:Q09487 PaxDb:Q09487
EnsemblMetazoa:C30G12.7 GeneID:174197 KEGG:cel:CELE_C30G12.7
UCSC:C30G12.7 CTD:174197 WormBase:C30G12.7 InParanoid:Q09487
OMA:KDSIFDE NextBio:882961 Uniprot:Q09487
Length = 535
Score = 341 (125.1 bits), Expect = 1.1e-28, P = 1.1e-28
Identities = 83/335 (24%), Positives = 168/335 (50%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKV-DERNPIDIEMILSEVIDDLHELMRHQSANHLIQK 298
+ ++RG ++ AKD+ G RF+Q+++ ++ + + I EV+ + EL+ N+++QK
Sbjct: 192 LSDIRGALLKFAKDQVGSRFIQQELASSKDRFEKDSIFDEVVSNADELVDDIFGNYVVQK 251
Query: 299 LIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLL 358
E +L+ +++ R+ + RV+QK L+ ++ + Q +
Sbjct: 252 FFEYGEERHWARLVDAIID---RVPEYAFQMYACRVLQKALE--------KINEPLQIKI 300
Query: 359 VSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTK---DLLEEIAENCLDLATDRSGCCLL 415
+S ++++ K +GNHV+++ ++K P Y + D L E + +++ D GC ++
Sbjct: 301 LSQIRHVIHRCMKDQNGNHVVQKAIEKVSPQYVQFIVDTLLESSNTIYEMSVDPYGCRVV 360
Query: 416 QYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYF 475
Q C+ Q +I + ++ + YGNYVVQ+++ + +V +++ F
Sbjct: 361 QRCLEHCSPSQTKPVIGQIHKRFDEIANNQYGNYVVQHVIEHGSEEDRMVIVTRVSNNLF 420
Query: 476 ALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPE-----IVQLILDPYGNYVIQTAWD 530
+ K SSNV++KCL + + I+ H E +VQ++ D Y NYV+Q +D
Sbjct: 421 EFATHKYSSNVIEKCLEQGAVYHKSMIVGAACHHQEGSVPIVVQMMKDQYANYVVQKMFD 480
Query: 531 VSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + V + P L+ +GK++LAK+
Sbjct: 481 QVTSEQRRELILT-VRPHIPVLRQFPHGKHILAKL 514
>RGD|1307190 [details] [associations]
symbol:Pum1 "pumilio homolog 1 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1307190 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 IPI:IPI00776810
Ensembl:ENSRNOT00000056233 UCSC:RGD:1307190 ArrayExpress:D3ZHQ4
Uniprot:D3ZHQ4
Length = 944
Score = 347 (127.2 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 86/331 (25%), Positives = 172/331 (51%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ + +++ +E++ ++LM N++IQK
Sbjct: 604 LREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKF 663
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ KL L+ + +L + + G RV+QK L E+ + +QQ+ +V
Sbjct: 664 FEFGSHEQ--KLALAE-RIRGHVLSLALQMYGCRVIQKAL---EF-----IPSDQQNEMV 712
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 713 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 772
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
+Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G LS
Sbjct: 773 EHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQ 832
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q DV++
Sbjct: 833 HKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 892
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 893 GQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 922
Score = 180 (68.4 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 79/320 (24%), Positives = 136/320 (42%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARAR-HHHHRTSYSSIEELRGRIILVAKD 253
PS S SHG S +LG TN S RY + A + +S SS+ + ++
Sbjct: 519 PSLS--SHGS-SSSLNLGGLTNGSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRL 575
Query: 254 EQGCRFLQKK------VDERNPIDIEMILSEVIDDLHELMRHQSANHLIQ-KLIGVLNEE 306
G + D RN + L E+ + E + Q + IQ KL E
Sbjct: 576 RYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAE 635
Query: 307 QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366
+ +L+ + + Q ++ D+ G+ V+QK + G + EQ+ L ++
Sbjct: 636 R--QLVFNEIL--QAAYQLMVDVFGNYVIQKFFEFGSH--------EQKLALAERIRGHV 683
Query: 367 VSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQ 426
+SL+ +G VI++ L+ P D +++ E+ + L D++G ++Q CI Q +
Sbjct: 684 LSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQS 743
Query: 427 KARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNV 486
+I + LS H YG V+Q IL +P T ++ +L L + + V
Sbjct: 744 LQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYV 803
Query: 487 VQKCLLESGEEQSTGIINEI 506
+Q L E + I+ EI
Sbjct: 804 IQHVLEHGRPEDKSKIVAEI 823
Score = 176 (67.0 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 60/237 (25%), Positives = 110/237 (46%)
Query: 233 HRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHEL--MRHQ 290
H + E +RG ++ +A GCR +QK + E P D + + +D H L ++ Q
Sbjct: 669 HEQKLALAERIRGHVLSLALQMYGCRVIQKAL-EFIPSDQQNEMVRELDG-HVLKCVKDQ 726
Query: 291 SANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQL 350
+ NH++QK I + + Q + I+ Q + + G RV+Q++L+
Sbjct: 727 NGNHVVQKCIECV-QPQSLQFIIDAFKGQ--VFALSTHPYGCRVIQRILE--------HC 775
Query: 351 TQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRS 410
+Q ++ L T L + +GN+VI+ L+ P+ ++ EI N L L+ +
Sbjct: 776 LPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKF 835
Query: 411 GCCLLQYCIPLAQEEQKARLIADVVA-N------AYVLSEHSYGNYVVQYILGLKIP 460
+++ C+ A ++A LI +V N Y + + Y NYVVQ ++ + P
Sbjct: 836 ASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 892
>ZFIN|ZDB-GENE-030131-2074 [details] [associations]
symbol:pum1 "pumilio homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 ZFIN:ZDB-GENE-030131-2074 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01057427 EMBL:CABZ01093012
EMBL:CU207343 IPI:IPI00995409 Ensembl:ENSDART00000122308
ArrayExpress:E7FFV0 Bgee:E7FFV0 Uniprot:E7FFV0
Length = 1154
Score = 344 (126.2 bits), Expect = 4.6e-28, P = 4.6e-28
Identities = 86/332 (25%), Positives = 174/332 (52%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G ++ ++D+ G RF+Q K++ +P + +++ +E++ ++LM N++IQK
Sbjct: 811 LREIAGHVMEFSQDQHGSRFIQLKLERASPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 870
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ +Q KL L+ + +L + + G RV+QK L+ P+ QQ+ E +V
Sbjct: 871 FEFGSLDQ--KLALAE-RIRGHVLSLALQMYGCRVIQKALEF--IPSDQQVINE----MV 921
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEI-AENCLDLATDRSGCCLLQYC 418
L + K +GNHV+++C++ P + +++ + L+T GC ++Q
Sbjct: 922 RELDGHVLKCVKDQNGNHVVQKCIECVQPHALQFIIDAFKGQQVFALSTHPYGCRVIQRI 981
Query: 419 IPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALS 478
+ EQ ++ ++ + L + YGNYV+Q++L + + +V+++ G LS
Sbjct: 982 LEHCLPEQTLSILEEIHQHTEQLVQDQYGNYVIQHVLEHGRAEDKSKIVSEIRGNVLGLS 1041
Query: 479 LGKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWDVSQ 533
K +SNVV+KC+ S + +I+E+ H + ++ D Y NYV+Q DV++
Sbjct: 1042 QHKFASNVVEKCVTHSLRAERAMLIDEVCSMADGPHSALYTMMKDQYANYVVQKMIDVAE 1101
Query: 534 GRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1102 PTQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 1132
>CGD|CAL0004399 [details] [associations]
symbol:orf19.5381 species:5476 "Candida albicans" [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0001308 "negative
regulation of chromatin silencing involved in replicative cell
aging" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
CGD:CAL0004399 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AACQ01000050 RefSeq:XP_717758.1
ProteinModelPortal:Q5A835 GeneID:3640530 KEGG:cal:CaO19.5381
Uniprot:Q5A835
Length = 783
Score = 341 (125.1 bits), Expect = 4.7e-28, P = 4.7e-28
Identities = 114/399 (28%), Positives = 192/399 (48%)
Query: 195 PSYSNL-SHGFL--SDHHHLGSSTNASSRYNNFYARARHHHHRTSYSS--IEELRGRIIL 249
P++ + H F + +H N + N R YS +++ G I+
Sbjct: 391 PAFPMMPQHNFHQHNQYHPRPHYRNNNGMMNVHRKNLRRKEDSAKYSDAKLQDFTGSILT 450
Query: 250 VAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMT 309
+ KD+ GCRFLQ+++ N + +I +E+ ELM N+LIQKL ++N EQ
Sbjct: 451 LCKDQHGCRFLQRELI--NETNATLIFNEIYFKAVELMIDPFGNYLIQKLFTMINLEQ-- 506
Query: 310 KLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQL-TQEQQSLLVSALKNITVS 368
+L+L + L RI D G+R +QKL+D E ++ T+ S +V +++ +
Sbjct: 507 RLVL-INQCSNELFRIALDPHGTRSLQKLIDVIETNEEIEIITRNLYSNIVVLSRDLNGN 565
Query: 369 ------LSK----SPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYC 418
L+K S N + + + + I N L +A R GCC+LQ C
Sbjct: 566 HVVQKILTKFNTISSDSNSSDSNRDGAQHQNQNQFIFDIIQANLLYIACHRHGCCVLQRC 625
Query: 419 IPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILG-LKIP--------QVTADVVAQ 469
+ ++Q +L ++ + LS YGNYVVQY+L + QV ++ +
Sbjct: 626 LDYGNKQQCQQLSQEIAKHTIKLSLDPYGNYVVQYVLNKYSVGGDAQNTDNQVIDIIIQE 685
Query: 470 LAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIR-HPEIV-QLILDPYGNYVIQT 527
+ + LSL K SNV++KCL S + I N I+ H + QL+ DP+GNYV+QT
Sbjct: 686 IKSNFIQLSLHKFGSNVIEKCLKISSISKDL-IDNLIVLDHGQAFNQLLNDPFGNYVLQT 744
Query: 528 AWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKVR 566
+ DV+ + Q L +++ P ++S +G+ +L K++
Sbjct: 745 SLDVANLEQFEQ-LSKILLPLLPNIKSTPHGRRILNKIQ 782
>TAIR|locus:2117552 [details] [associations]
symbol:PUM6 "pumilio 6" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AL049480 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 EMBL:AF360298 EMBL:AY133866 EMBL:AK318840
EMBL:AK319148 IPI:IPI00518278 IPI:IPI00520481 IPI:IPI00656838
IPI:IPI00972816 PIR:T04242 RefSeq:NP_001031720.1 RefSeq:NP_567733.1
RefSeq:NP_974618.2 UniGene:At.21892 UniGene:At.28428
ProteinModelPortal:Q9C5E7 SMR:Q9C5E7 STRING:Q9C5E7 PaxDb:Q9C5E7
PRIDE:Q9C5E7 EnsemblPlants:AT4G25880.1 GeneID:828694
KEGG:ath:AT4G25880 TAIR:At4g25880 InParanoid:Q9C5E7 OMA:MEGSFLA
PhylomeDB:Q9C5E7 ProtClustDB:CLSN2689613 Genevestigator:Q9C5E7
Uniprot:Q9C5E7
Length = 861
Score = 342 (125.4 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 88/331 (26%), Positives = 167/331 (50%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ ++ G I+ + D+ G RF+Q+K++ P + + E++ +LM N++IQK
Sbjct: 530 LSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKF 589
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
N Q +L ++ +++ + + G RV+QK LD E R +L +E ++
Sbjct: 590 FEYGNSTQRKELADQLMG---QIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQVM 646
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
+++ +GNHVI++C++ P D +L L+ GC ++Q +
Sbjct: 647 RCVRD--------QNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLL 698
Query: 420 PLAQEEQKARLIAD-VVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALS 478
+ + R I + ++ + VLS+ YGNYV Q++L + + +L+G LS
Sbjct: 699 ERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLS 758
Query: 479 LGKCSSNVVQKCLLESGEEQSTGIINEIIRHPE----IVQLILDPYGNYVIQTAWDVSQG 534
L K +SNV++KCL G + II EI E ++ ++ D YGNYV+Q ++
Sbjct: 759 LHKFASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTA 818
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R TL+ V ++ L+ + YGK++++++
Sbjct: 819 DQ-RLTLFSRVRMHASALKKYTYGKHIVSRL 848
Score = 37 (18.1 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 18 PENNSRHPVTTSQQSHVASQNLHLIPIYQKPNQQDYHVEN 57
P PVTT S + + PIY P + + ++N
Sbjct: 60 PRYGFEEPVTTHPSSKHSLNRIPSPPIYY-PTEYQF-IDN 97
>TAIR|locus:2087560 [details] [associations]
symbol:PUM5 "pumilio 5" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005829
GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AP000383 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
EMBL:AK228410 EMBL:BX824276 IPI:IPI00527056 IPI:IPI00972845
RefSeq:NP_188660.3 UniGene:At.38266 ProteinModelPortal:Q9LJX4
SMR:Q9LJX4 STRING:Q9LJX4 PaxDb:Q9LJX4 PRIDE:Q9LJX4
EnsemblPlants:AT3G20250.1 GeneID:821569 KEGG:ath:AT3G20250
TAIR:At3g20250 InParanoid:Q9LJX4 OMA:QHKYASN PhylomeDB:Q9LJX4
Genevestigator:Q9LJX4 Uniprot:Q9LJX4
Length = 961
Score = 333 (122.3 bits), Expect = 5.9e-27, P = 5.9e-27
Identities = 82/330 (24%), Positives = 169/330 (51%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ ++ GR++ + D+ G RF+Q+K++ + + + SEV+ +LM N++IQK
Sbjct: 626 LSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKF 685
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
I Q +L+ + +++ + + G RV+QK L+ + + +L +E
Sbjct: 686 IEHGTPAQREELVKQLAG---QMVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDG--- 739
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
+ LK + + +GNHVI++C++ P ++ L+T GC ++Q +
Sbjct: 740 NVLKCV-----RDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRIL 794
Query: 420 PLAQEEQKARLIAD-VVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALS 478
++++ I D ++ +A+ L+ YGNYV Q++L P ++ +L G +S
Sbjct: 795 EHCSDDEETHCIIDEILESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMS 854
Query: 479 LGKCSSNVVQKCLLESGEEQSTGIINEIIRHPE----IVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KCL + + +I EI+ E ++ ++ D + NYV+Q ++S+
Sbjct: 855 QHKYASNVVEKCLEHADSTEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKD 914
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAK 564
++ R+ L + + L+ + YGK+++A+
Sbjct: 915 QQ-REILVQRMKIHLQSLRKYTYGKHIVAR 943
Score = 172 (65.6 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 49/178 (27%), Positives = 86/178 (48%)
Query: 388 PDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYG 447
P+ K L +IA ++ + D+ G +Q + +E+KA + ++V+ A L +G
Sbjct: 619 PNARKLELSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFG 678
Query: 448 NYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEII 507
NYV+Q + P ++V QLAG+ +LSL V+QK L +Q T +I E+
Sbjct: 679 NYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIREL- 737
Query: 508 RHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+++ + D GN+VIQ + RI + + L +H YG V+ ++
Sbjct: 738 -DGNVLKCVRDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVAT-LSTHPYGCRVIQRI 793
Score = 129 (50.5 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 49/212 (23%), Positives = 86/212 (40%)
Query: 355 QSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCL 414
+ L +S + V S HG+ I++ L+ + + E+ L TD G +
Sbjct: 622 RKLELSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYV 681
Query: 415 LQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILG-LKIPQVTADVVAQLAGR 473
+Q I Q+ L+ + LS YG V+Q L + + Q T +++ +L G
Sbjct: 682 IQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKT-ELIRELDGN 740
Query: 474 YFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQ 533
+ ++V+QKC+ ES G + R ++ L PYG VIQ +
Sbjct: 741 VLKCVRDQNGNHVIQKCI-ESMPAGRIGFVIAAFRG-QVATLSTHPYGCRVIQRILEHCS 798
Query: 534 GRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ D +++++ L YG V V
Sbjct: 799 DDEETHCIIDEILESAFALAHDQYGNYVTQHV 830
Score = 46 (21.3 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 29/129 (22%), Positives = 51/129 (39%)
Query: 210 HLGSSTNA-SSRYNNFYARARHHHHRTSYSSIEELRGRIILVAKDEQGCRFL---QKKVD 265
H G + + ++ ++N R+ H RT+ S+ E + ++Q L +K +
Sbjct: 137 HFGDNNQSPTTSWDNMGIRSSLHSSRTALSTHRE-EPEDEASSGEQQSYASLAGRRKSIA 195
Query: 266 ERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRI 325
+ D + LS V H A I + + E +L S ++S LLR
Sbjct: 196 DMIQEDFPLTLSSVFKRPHSAGNRPIAQD-IHAISSDTSSEHARRLPESDINSVN-LLRE 253
Query: 326 CDDLSGSRV 334
D LS +
Sbjct: 254 TDSLSSDAI 262
>WB|WBGene00004245 [details] [associations]
symbol:puf-9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040017 "positive regulation of locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0002009 GO:GO:0005737 GO:GO:0040010 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0040017 GO:GO:0003730 GO:GO:0006402 EMBL:FO081143
eggNOG:COG5099 HSSP:Q14671 GeneTree:ENSGT00680000100664 PIR:T26218
RefSeq:NP_508980.2 ProteinModelPortal:Q23191 SMR:Q23191
STRING:Q23191 PaxDb:Q23191 EnsemblMetazoa:W06B11.2.1
EnsemblMetazoa:W06B11.2.2 GeneID:180850 KEGG:cel:CELE_W06B11.2
UCSC:W06B11.2 CTD:180850 WormBase:W06B11.2 HOGENOM:HOG000020400
InParanoid:Q23191 OMA:TIKPHIA NextBio:911254 Uniprot:Q23191
Length = 703
Score = 328 (120.5 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 83/337 (24%), Positives = 175/337 (51%)
Query: 239 SIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQK 298
++++++ +I AKD+ G RF+Q+K++ + D I + V+++ ELM N++IQK
Sbjct: 339 TLQDIKNNVIEFAKDQHGSRFIQQKLERASLRDKAAIFTPVLENAEELMTDVFGNYVIQK 398
Query: 299 LIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLL 358
N EQ +L+ ++ + ++++ + G RV+QK L+ E + ++ E + +
Sbjct: 399 FFEFGNNEQRNQLVGTI---RGNVMKLALQMYGCRVIQKALEYVEEKYQHEILGEMEGQV 455
Query: 359 VSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLD----LATDRSGCCL 414
+ +K+ +GNHVI++ +++ P+ + +++ +N D L+ GC +
Sbjct: 456 LKCVKD--------QNGNHVIQKVIERVEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRV 507
Query: 415 LQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQ-LAGR 473
+Q + EEQK ++ + + L YGNYV+Q+++ P +V ++
Sbjct: 508 IQRVLEYCNEEQKQPVLDALQIHLKQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDD 567
Query: 474 YFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPE-----IVQLILDPYGNYVIQTA 528
+ K +SNV++KCL G + II+++ P ++Q++ DP+ NYV+Q
Sbjct: 568 LLKFAQHKFASNVIEKCLTFGGHAERNLIIDKVCGDPNDPSPPLLQMMKDPFANYVVQKM 627
Query: 529 WDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
DV+ + R+ + + + L+ + +GK++L K+
Sbjct: 628 LDVADPQH-RKKITLTIKPHIATLRKYNFGKHILLKL 663
Score = 156 (60.0 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 49/183 (26%), Positives = 80/183 (43%)
Query: 387 PPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSY 446
P T L++I N ++ A D+ G +Q + A KA + V+ NA L +
Sbjct: 332 PNGQTPKTLQDIKNNVIEFAKDQHGSRFIQQKLERASLRDKAAIFTPVLENAEELMTDVF 391
Query: 447 GNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEI 506
GNYV+Q + +V + G L+L V+QK L E+ I+ E+
Sbjct: 392 GNYVIQKFFEFGNNEQRNQLVGTIRGNVMKLALQMYGCRVIQKALEYVEEKYQHEILGEM 451
Query: 507 IRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVV----DNSPFLQSHMYGKNVL 562
++++ + D GN+VIQ + + R+ Q + D DN L H YG V+
Sbjct: 452 --EGQVLKCVKDQNGNHVIQKVIERVEPERL-QFIIDAFTKNNSDNVYTLSVHPYGCRVI 508
Query: 563 AKV 565
+V
Sbjct: 509 QRV 511
>TAIR|locus:2043047 [details] [associations]
symbol:PUM3 "pumilio 3" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005886 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
ProtClustDB:CLSN2717398 InterPro:IPR012940 Pfam:PF07990
IPI:IPI00542656 PIR:A84693 RefSeq:NP_180478.1 UniGene:At.46280
ProteinModelPortal:Q9ZW02 SMR:Q9ZW02 PaxDb:Q9ZW02 PRIDE:Q9ZW02
EnsemblPlants:AT2G29140.1 GeneID:817463 KEGG:ath:AT2G29140
TAIR:At2g29140 InParanoid:Q9ZW02 OMA:MYENASA PhylomeDB:Q9ZW02
Genevestigator:Q9ZW02 Uniprot:Q9ZW02
Length = 964
Score = 315 (115.9 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 78/338 (23%), Positives = 176/338 (52%)
Query: 233 HRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSA 292
++T + E+ G ++ + D+ G RF+Q+K++ + M+ E++ LM
Sbjct: 617 NKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFG 676
Query: 293 NHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQ 352
N++IQK Q +L ++ + +L + + G RV+QK ++ + + Q+ +
Sbjct: 677 NYVIQKFFEHGLPPQRRELGEKLIDN---VLPLSLQMYGCRVIQKAIEVVDLDQKIQMVK 733
Query: 353 EQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGC 412
E ++ +++ +GNHV+++C++ P + + ++ + + L+T GC
Sbjct: 734 ELDGHVMRCVRD--------QNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGC 785
Query: 413 CLLQYCIPLAQE-EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLA 471
++Q + + +++++ ++++ +L++ YGNYVVQ++L P ++ +LA
Sbjct: 786 RVIQRVLEHCHNPDTQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELA 845
Query: 472 GRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIR---HPEIVQLIL-DPYGNYVIQT 527
G+ +S K +SNVV+KCL G E+ ++NE++ E +Q ++ D + NYV+Q
Sbjct: 846 GKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQK 905
Query: 528 AWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ ++ R+ + + + L+ + YGK+++A+V
Sbjct: 906 VLETCDDQQ-RELILTRIKVHLNALKKYTYGKHIVARV 942
Score = 51 (23.0 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 32/129 (24%), Positives = 50/129 (38%)
Query: 43 PIYQKPNQ---QDYHVENPSLQNPTTQDQLSGHLHYSNYPYDKSLAMEPSTCRCRTPE-S 98
P+ Q+P++ ++ EN N + G S Y Y + + S R TP+
Sbjct: 204 PVVQQPSRPASRNTFDENVDSNNNLSPSASQGIGAPSPYCY--AAVLGSSLSRNGTPDPQ 261
Query: 99 GLSRPSQFAAPRPPLSQYLPYPIPLNQAQYSFINSLPTSFPLENHETIDLQSGFDLQSGF 158
G++R P P L+ PI + + + P N T L DL +
Sbjct: 262 GIAR-----VPSPCLT-----PIGSGRVSSNDKRNTSNQSPF-NGVTSGLNESSDLVNAL 310
Query: 159 EGLNIDGLG 167
GLN+ G G
Sbjct: 311 SGLNLSGTG 319
>TAIR|locus:2043182 [details] [associations]
symbol:PUM1 "pumilio 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
IPI:IPI00536716 PIR:F84693 RefSeq:NP_180483.1 UniGene:At.38509
ProteinModelPortal:Q9ZW07 SMR:Q9ZW07 STRING:Q9ZW07 PaxDb:Q9ZW07
PRIDE:Q9ZW07 EnsemblPlants:AT2G29200.1 GeneID:817469
KEGG:ath:AT2G29200 TAIR:At2g29200 HOGENOM:HOG000238460
InParanoid:Q9ZW07 OMA:DQAHKAT PhylomeDB:Q9ZW07
ProtClustDB:CLSN2717398 Genevestigator:Q9ZW07 InterPro:IPR012940
Pfam:PF07990 Uniprot:Q9ZW07
Length = 968
Score = 314 (115.6 bits), Expect = 8.1e-25, P = 8.1e-25
Identities = 79/338 (23%), Positives = 173/338 (51%)
Query: 233 HRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSA 292
++T + E+ G ++ + D+ G RF+Q+K++ + M+ E++ LM
Sbjct: 621 NKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFG 680
Query: 293 NHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQ 352
N++IQK Q +L + +L + + G RV+QK ++ +
Sbjct: 681 NYVIQKFFEHGLPPQRRELAEKLFD---HVLPLSLQMYGCRVIQKAIEVVDL-------- 729
Query: 353 EQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGC 412
+Q+ +V L + + +GNHV+++C++ P + + ++ + + L+T GC
Sbjct: 730 DQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGC 789
Query: 413 CLLQYCIPLAQE-EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLA 471
++Q + + + +++++ ++++ +L++ YGNYVVQ++L P ++ +LA
Sbjct: 790 RVIQRVLEHCHDPDTQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELA 849
Query: 472 GRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIR---HPEIVQLIL-DPYGNYVIQT 527
G+ +S K +SNVV+KCL G E+ ++NE++ E +Q ++ D + NYV+Q
Sbjct: 850 GKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQK 909
Query: 528 AWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ ++ R+ + + + L+ + YGK+V+A++
Sbjct: 910 VLETCDDQQ-RELILTRIKVHLTALKKYTYGKHVVARI 946
>TAIR|locus:2043187 [details] [associations]
symbol:PUM2 "pumilio 2" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005829 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003730 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 ProtClustDB:CLSN2717398 InterPro:IPR012940
Pfam:PF07990 EMBL:AY096653 EMBL:AK226635 IPI:IPI00539996 PIR:E84693
RefSeq:NP_001189630.1 RefSeq:NP_180482.1 UniGene:At.28148
UniGene:At.48528 ProteinModelPortal:Q9ZW06 SMR:Q9ZW06 STRING:Q9ZW06
PaxDb:Q9ZW06 PRIDE:Q9ZW06 ProMEX:Q9ZW06 EnsemblPlants:AT2G29190.1
EnsemblPlants:AT2G29190.2 GeneID:817468 KEGG:ath:AT2G29190
TAIR:At2g29190 InParanoid:Q9ZW06 OMA:LAANCED PhylomeDB:Q9ZW06
Genevestigator:Q9ZW06 Uniprot:Q9ZW06
Length = 972
Score = 315 (115.9 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 79/338 (23%), Positives = 174/338 (51%)
Query: 233 HRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSA 292
++T + E+ G ++ + D+ G RF+Q+K++ + M+ E++ LM
Sbjct: 625 NKTRGFELAEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFG 684
Query: 293 NHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQ 352
N++IQK Q +L + + +L + + G RV+QK ++ +
Sbjct: 685 NYVIQKFFEHGLPPQRRELADKLFDN---VLPLSLQMYGCRVIQKAIEVVDL-------- 733
Query: 353 EQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGC 412
+Q+ +V L + + +GNHV+++C++ P + + ++ N + L+T GC
Sbjct: 734 DQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGC 793
Query: 413 CLLQYCIPLAQE-EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLA 471
++Q + + + +++++ ++++ +L++ YGNYV+Q++L P ++ +LA
Sbjct: 794 RVIQRVLEHCHDPDTQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELA 853
Query: 472 GRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIR---HPEIVQLIL-DPYGNYVIQT 527
G+ +S K +SNVV+KCL G E+ ++NE++ E +Q ++ D + NYV+Q
Sbjct: 854 GKIVQMSQQKFASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQK 913
Query: 528 AWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ ++ R+ + + + L+ + YGK+++A+V
Sbjct: 914 VLETCDDQQ-RELILGRIKVHLNALKKYTYGKHIVARV 950
Score = 39 (18.8 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 104 SQFAAPRPPLSQYLPYPI--PLNQAQYSFINSLPTSFPLENHETID--LQSGFDLQSGFE 159
S+ P P +P P P+ + S + TS N + L DL +
Sbjct: 265 SRNGTPDPQAIARVPSPCLTPIGSGRVSSNDKRNTS----NQSPFNGGLNESSDLVNALS 320
Query: 160 GLNIDGLG 167
G+N+ G G
Sbjct: 321 GMNLSGSG 328
>ASPGD|ASPL0000000865 [details] [associations]
symbol:AN6587 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000110 eggNOG:COG5099 OrthoDB:EOG4RR9RJ
RefSeq:XP_664191.1 ProteinModelPortal:Q5AYP3
EnsemblFungi:CADANIAT00007365 GeneID:2870653 KEGG:ani:AN6587.2
HOGENOM:HOG000201252 OMA:SHKSSPQ Uniprot:Q5AYP3
Length = 849
Score = 302 (111.4 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 89/337 (26%), Positives = 163/337 (48%)
Query: 232 HHRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQS 291
H + ++++ G I+ + D+ G RFLQ+K++ N + + + E++ + +L +
Sbjct: 449 HGKNKRFELKDIYGHIVEFSGDQYGSRFLQQKIETANSDEKDRVFREILPNFLQLAQDIF 508
Query: 292 ANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLT 351
N++ QKL N+ Q K++ + S +++++ G RV+QK L+ LT
Sbjct: 509 GNYVAQKLYEHGNQTQK-KMMTEDMRS--KVVKLSLSPYGCRVVQKALE-------HVLT 558
Query: 352 QEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSG 411
+QQ+ LV ++ + +S HGNHVI++ + P YTK L++ +T G
Sbjct: 559 -DQQAWLVREIQPQVLECVESQHGNHVIQKVFEYVPTQYTKGLVDSFRGQVERQSTHSYG 617
Query: 412 CCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLA 471
C ++Q + ++ + ++A++ A A L E YGNYV+Q+I+ + + ++ +
Sbjct: 618 CRVIQRMLEFCEDVDRRFILAEIRACAPRLIEDQYGNYVIQHIIQSGEEEDRSFMIEMVK 677
Query: 472 GRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPE-----IVQLILDPYGNYVIQ 526
+ S K +SNVV+K + E Q II + E +++L+ D YGNYV Q
Sbjct: 678 QKLLWYSKHKFASNVVEKSIEFGNEAQRQDIITRLTAKTEGHETQLIELMADQYGNYVFQ 737
Query: 527 TAWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLA 563
G R L D + L+ GK + A
Sbjct: 738 KVLGHLSGVE-RAALVDRIKPLLVHLKKSNCGKQIAA 773
>POMBASE|SPAC1687.22c [details] [associations]
symbol:puf3 "RNA-binding protein Puf3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IEP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC1687.22c GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0005741 GO:GO:0033554 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 RefSeq:NP_593141.2 HSSP:Q14671
ProteinModelPortal:O94462 SMR:O94462 EnsemblFungi:SPAC1687.22c.1
GeneID:2542300 KEGG:spo:SPAC1687.22c OrthoDB:EOG4RR9RJ
NextBio:20803362 Uniprot:O94462
Length = 732
Score = 286 (105.7 bits), Expect = 6.2e-22, P = 6.2e-22
Identities = 87/341 (25%), Positives = 159/341 (46%)
Query: 231 HHHRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVID-DLHELMRH 289
H ++ + + ++ G ++L + D+ G RF+Q+K+ + E + E+ +LM
Sbjct: 385 HANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMD 444
Query: 290 QSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQ 349
N+++QK NE+Q +++LS + L + + G RV+QK + EY
Sbjct: 445 IFGNYVVQKYFEFGNEKQK-QILLSQIKGHVFSLSL--QMYGCRVVQKAI---EY----- 493
Query: 350 LTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDR 409
++ E Q L+ L + +GNHVI++ ++ + + +L + L+
Sbjct: 494 ISPEHQVQLIQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHP 553
Query: 410 SGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQ 469
GC ++Q I E+K +I +++ + L++ YGNYVVQ+IL +
Sbjct: 554 YGCRVIQRAIEHCHSERKL-IIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDL 612
Query: 470 LAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHP----EIVQLIL-DPYGNYV 524
+ LS K +SNVV++C+ + I+N+II I+ L++ D Y NYV
Sbjct: 613 MIDHLLFLSCHKFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYV 672
Query: 525 IQTAWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
IQ D S R L + + L+ YGK+++ V
Sbjct: 673 IQKLLDASPEEE-RDLLISYIYPHISVLKKFTYGKHLIMSV 712
Score = 143 (55.4 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 54/241 (22%), Positives = 115/241 (47%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
I+EL G ++ D+ G +QK ++ + ++ IL + +H L H +IQ+
Sbjct: 503 IQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRA 562
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
I + E+ KLI+ + +L++ D G+ V+Q +L G ++ + L++
Sbjct: 563 IEHCHSER--KLIIEELLPH--ILKLTQDQYGNYVVQHILRTGSESDKKYIFD----LMI 614
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEI----AENC---LDLATDRSGC 412
L + LS ++V++RC+ + +L +I AENC + + D+
Sbjct: 615 DHL----LFLSCHKFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYAN 670
Query: 413 CLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAG 472
++Q + + EE++ LI+ + + VL + +YG +++ + + ++A V +LA
Sbjct: 671 YVIQKLLDASPEEERDLLISYIYPHISVLKKFTYGKHLIMSVERFRQKSISA--VPKLAS 728
Query: 473 R 473
+
Sbjct: 729 K 729
Score = 124 (48.7 bits), Expect = 0.00035, P = 0.00035
Identities = 43/158 (27%), Positives = 81/158 (51%)
Query: 227 RARHHHHRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHEL 286
RA H H IEEL I+ + +D+ G +Q + + D + I +ID L L
Sbjct: 561 RAIEHCHSERKLIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFL 620
Query: 287 MRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQR----LLRICDDLSGSRVMQKLLDAG 342
H+ A++++++ I +++ +++ ++S + L+ + D + V+QKLLDA
Sbjct: 621 SCHKFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDAS 680
Query: 343 EYPTRQQLTQEQQSLLVSAL-KNITVSLSKSPHGNHVI 379
P +E++ LL+S + +I+V L K +G H+I
Sbjct: 681 --P------EEERDLLISYIYPHISV-LKKFTYGKHLI 709
>SGD|S000003146 [details] [associations]
symbol:MPT5 "mRNA-binding protein of the PUF family"
species:4932 "Saccharomyces cerevisiae" [GO:0030674 "protein
binding, bridging" evidence=IPI] [GO:0045947 "negative regulation
of translational initiation" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000003146 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941 GO:GO:0045947
GO:GO:0003729 eggNOG:COG5099 GeneTree:ENSGT00390000017241
EMBL:X83690 EMBL:Z72700 EMBL:D25541 EMBL:D26184 PIR:S64195
RefSeq:NP_011337.1 ProteinModelPortal:P39016 SMR:P39016
DIP:DIP-2271N IntAct:P39016 MINT:MINT-2779525 STRING:P39016
PaxDb:P39016 PRIDE:P39016 EnsemblFungi:YGL178W GeneID:852697
KEGG:sce:YGL178W CYGD:YGL178w HOGENOM:HOG000113640 OMA:ISINQYG
OrthoDB:EOG42NN7Z NextBio:972038 Genevestigator:P39016
GermOnline:YGL178W GO:GO:1900153 Uniprot:P39016
Length = 859
Score = 271 (100.5 bits), Expect = 3.9e-20, P = 3.9e-20
Identities = 73/249 (29%), Positives = 136/249 (54%)
Query: 248 ILVAKDEQGCRFLQKKVD---ERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLN 304
I +A D+ GCRFLQKK++ E N + +++ ++ +L+ N+L+QKL L
Sbjct: 216 IKLATDQFGCRFLQKKLETPSESNMVR-DLMYEQIKPFFLDLILDPFGNYLVQKLCDYLT 274
Query: 305 EEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKN 364
EQ T LI ++ + + +I + G+R +QK++D + + L + S ++++
Sbjct: 275 AEQKTLLIQTIYPN---VFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQ 331
Query: 365 ITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAE--NCLDLATDRSGCCLLQYCIPLA 422
+ V+L +GNHVI++C+ KF P +++ I E N + ++T + GCC+LQ + +
Sbjct: 332 V-VTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVC 390
Query: 423 QEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQ--VTADVVAQLAGRYFALSLG 480
+Q ++ +V L +GNY++Q++L +K + A++ +L+ LS
Sbjct: 391 TLQQIFKISVKIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAELFNRLSNELCQLSCL 450
Query: 481 KCSSNVVQK 489
K SSNVV+K
Sbjct: 451 KFSSNVVEK 459
>ZFIN|ZDB-GENE-081031-76 [details] [associations]
symbol:pum2 "pumilio homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 ZFIN:ZDB-GENE-081031-76
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01062788 EMBL:CABZ01062789
EMBL:CABZ01062790 EMBL:CU468963 IPI:IPI00864826
Ensembl:ENSDART00000086578 Bgee:F1R4Q6 Uniprot:F1R4Q6
Length = 1206
Score = 268 (99.4 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 89/359 (24%), Positives = 175/359 (48%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ +L G ++ ++D+ G RF+Q+K++ + +M+ E++ ++LM N++IQK
Sbjct: 840 LRDLPGHMVEFSQDQHGSRFIQQKLERATSAERQMVFGEILQAAYQLMTDVFGNYVIQKF 899
Query: 300 I--GVLNEE----------------QM------TKLILSVVSSQQRLLRICDDLSGSRVM 335
G +++ QM K + S+ S QQ + I +L G V+
Sbjct: 900 FEFGSADQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISDIVRELDG-HVL 958
Query: 336 QKLLDA-GEYPTRQ--QLTQEQQ-SLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYT 391
+ + D G + ++ + Q Q ++ A + LS P+G VI+R L+ + T
Sbjct: 959 KCVKDQNGNHVVQKCIECVQPQALQFIIDAFQGQVFVLSTHPYGCRVIQRILEHCTQEQT 1018
Query: 392 KDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVV 451
+LEE+ ++ L + + L + R + + +L + YGNYV+
Sbjct: 1019 LPILEELHQHSEQLGQKNTS-------VQLKVTFKGLR-----ICSFDLLFKDQYGNYVI 1066
Query: 452 QYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEII---- 507
Q++L P+ + +VA++ G+ ALS K +SNVV+KC++ S + +I+E+
Sbjct: 1067 QHVLEHGRPEDKSKIVAEVRGKVLALSQHKFASNVVEKCVIHSSRAERALLIDEVCCQKD 1126
Query: 508 -RHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
H + ++ D Y NYV+Q D+++ + R+ + + + L+ + YGK++LAK+
Sbjct: 1127 GPHSALYTMMKDQYANYVVQRMIDMAEPAQ-RKIIMHKIRPHIATLRKYTYGKHILAKL 1184
Score = 148 (57.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 83/344 (24%), Positives = 145/344 (42%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFY--ARARHHHH-RTS--YSSIEEL----RG 245
PS + SHG S HLG N S RY + A A++ TS +SS +L R
Sbjct: 754 PSLPS-SHGS-SSSIHLGGLPNGSGRYISAAPGAEAKYRSSGSTSSLFSSSSQLFPPPRA 811
Query: 246 RIILVAKDEQG-CRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLN 304
R G R L+ + R P + L ++ + E + Q + IQ+ +
Sbjct: 812 RYSRSDVMPSGRSRLLEDFRNNRFP---NLQLRDLPGHMVEFSQDQHGSRFIQQKLERAT 868
Query: 305 EEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKN 364
+ + ++ + +L+ D+ G+ V+QK + G + +Q+ L + ++
Sbjct: 869 SAERQMVFGEILQAAYQLMT---DVFGNYVIQKFFEFG--------SADQKLALATRIRG 917
Query: 365 ITVSLSKSPHGNHVIKRCLQKFPPDYT--KDLLEEIAENCLDLATDRSGCCLLQYCIPLA 422
+ L+ +G VI++ L+ D D++ E+ + L D++G ++Q CI
Sbjct: 918 HVLPLALQMYGCRVIQKALESISSDQQVISDIVRELDGHVLKCVKDQNGNHVVQKCIECV 977
Query: 423 QEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKC 482
Q + +I +VLS H YG V+Q IL + T ++ +L + LG+
Sbjct: 978 QPQALQFIIDAFQGQVFVLSTHPYGCRVIQRILEHCTQEQTLPILEEL--HQHSEQLGQK 1035
Query: 483 SSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQ 526
+++V K + +R L D YGNYVIQ
Sbjct: 1036 NTSVQLKVTFKG------------LRICSFDLLFKDQYGNYVIQ 1067
>CGD|CAL0000998 [details] [associations]
symbol:PUF3 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0008298 "intracellular
mRNA localization" evidence=IEA] [GO:0051646 "mitochondrion
localization" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IEA]
[GO:0009060 "aerobic respiration" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000998 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 EMBL:AACQ01000198
EMBL:AACQ01000197 RefSeq:XP_711443.1 RefSeq:XP_711460.1
ProteinModelPortal:Q59P09 GeneID:3646939 GeneID:3646950
KEGG:cal:CaO19.1795 KEGG:cal:CaO19.9361 Uniprot:Q59P09
Length = 929
Score = 247 (92.0 bits), Expect = 1.3e-18, Sum P(4) = 1.3e-18
Identities = 70/275 (25%), Positives = 131/275 (47%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
++++ G I KD+ G RF+Q+K+ E + E I +E+ + +ELM N++IQK
Sbjct: 582 LKDIYGHAIEFTKDQHGSRFIQQKLPEATEEEKETIFNEIWEISYELMTDVFGNYVIQKY 641
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
Q L+ S++ L + G RV+Q+ L+A + E Q ++
Sbjct: 642 FEYGTTTQKQVLLESMIGHIHELSL---QMYGCRVVQRALEA--------IDNEGQLRII 690
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPP-DYTKDLLEEIAENCLDLATDRSGCCLLQYC 418
LK+ + K +GNHVI++ ++K P + +L + L+T GC ++Q
Sbjct: 691 EELKDHILICCKDQNGNHVIQKSIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQRL 750
Query: 419 IPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALS 478
+ + + + +++ + Y L YGNYV+Q+IL + ++ + G S
Sbjct: 751 LEYSDIDDQKLILSQLNNFLYYLILDQYGNYVIQHILENGTQEEKEPILEIVLGSVVQFS 810
Query: 479 LGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIV 513
K +SNV++KC+ Q I++E++ E +
Sbjct: 811 KHKFASNVIEKCIKFGDINQRKRILHEVMLGNETI 845
Score = 162 (62.1 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 55/238 (23%), Positives = 111/238 (46%)
Query: 328 DLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFP 387
D GSR +Q+ L P + T+E++ + + + I+ L GN+VI++ +
Sbjct: 595 DQHGSRFIQQKL-----P---EATEEEKETIFNEIWEISYELMTDVFGNYVIQKYFEYGT 646
Query: 388 PDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYG 447
+ LLE + + +L+ GC ++Q + E + R+I ++ + + + G
Sbjct: 647 TTQKQVLLESMIGHIHELSLQMYGCRVVQRALEAIDNEGQLRIIEELKDHILICCKDQNG 706
Query: 448 NYVVQY-ILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEI 506
N+V+Q I +K ++ L + + LS V+Q+ L S + I++++
Sbjct: 707 NHVIQKSIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQRLLEYSDIDDQKLILSQL 766
Query: 507 IRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAK 564
+ LILD YGNYVIQ + + + ++ + ++V+ + H + NV+ K
Sbjct: 767 NNF--LYYLILDQYGNYVIQHILE-NGTQEEKEPILEIVLGSVVQFSKHKFASNVIEK 821
Score = 53 (23.7 bits), Expect = 1.3e-18, Sum P(4) = 1.3e-18
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 212 GSSTNASSRYNNFYARARHHHHRTS 236
GSST+ S+ + +++++HHHH +
Sbjct: 504 GSSTSTSTSH---HSQSKHHHHHNN 525
Score = 49 (22.3 bits), Expect = 3.3e-18, Sum P(4) = 3.3e-18
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 194 SPSYSNLSHGFLSDHHHLGSSTNASSRYNN 223
S + ++ SH S HHH ++ N ++ NN
Sbjct: 505 SSTSTSTSHHSQSKHHHHHNNNNNNNNNNN 534
Score = 44 (20.5 bits), Expect = 1.3e-18, Sum P(4) = 1.3e-18
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 515 LILDPYGNYVIQTAWDVSQG 534
++ D +GNYVIQ + G
Sbjct: 865 MVKDQFGNYVIQKLVEAFDG 884
Score = 42 (19.8 bits), Expect = 1.3e-18, Sum P(4) = 1.3e-18
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 104 SQFAAPRPPLSQYLPYPIPL-----NQAQYSFINSLPTSFPLENHETIDLQSGFDLQSGF 158
S F +P L++ L P+P +Q+ I++ + P++ + + S DL S
Sbjct: 187 SAFTSPHGSLNENLNMPVPTRGGSRHQSISEKIDNYNNNSPIQTAAALSINS--DLNSDT 244
Query: 159 EGLN 162
+N
Sbjct: 245 VNIN 248
>SGD|S000003936 [details] [associations]
symbol:PUF3 "Protein of the mitochondrial outer surface"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IDA] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0032473
"external side of mitochondrial outer membrane" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0051646
"mitochondrion localization" evidence=IMP] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009060 "aerobic respiration"
evidence=IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SGD:S000003936 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005741 GO:GO:0003729
EMBL:BK006945 GO:GO:0009060 GO:GO:0007005 GO:GO:0008298
GO:GO:0000288 EMBL:X97560 EMBL:X91488 GO:GO:0051646 eggNOG:COG5099
GO:GO:0032473 OrthoDB:EOG4RR9RJ EMBL:Z73117 EMBL:Z73118 PIR:S64755
RefSeq:NP_013088.1 PDB:3K49 PDB:3K4E PDBsum:3K49 PDBsum:3K4E
ProteinModelPortal:Q07807 SMR:Q07807 DIP:DIP-4449N IntAct:Q07807
MINT:MINT-552454 STRING:Q07807 PaxDb:Q07807 PeptideAtlas:Q07807
EnsemblFungi:YLL013C GeneID:850647 KEGG:sce:YLL013C CYGD:YLL013c
GeneTree:ENSGT00680000100664 OMA:FIPYLIQ EvolutionaryTrace:Q07807
NextBio:966590 Genevestigator:Q07807 GermOnline:YLL013C
Uniprot:Q07807
Length = 879
Score = 245 (91.3 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 70/278 (25%), Positives = 134/278 (48%)
Query: 236 SYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHL 295
S S++++ G + KD+ G RF+Q+++ + E+I +E+ DD EL N++
Sbjct: 532 SNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYV 591
Query: 296 IQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQ 355
IQK ++ Q L+ + ++L + RV+QK L EY + Q+
Sbjct: 592 IQKFFEFGSKIQKNTLVDQFKGNMKQLSL---QMYACRVIQKAL---EY-----IDSNQR 640
Query: 356 SLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLL 415
LV L + + + K +GNHVI++ ++ P + +L + + L+T GC ++
Sbjct: 641 IELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVI 700
Query: 416 QYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYIL------GLKIPQVTADVVAQ 469
Q + E + ++ ++ L + YGNYV+QY+L ++ + +++
Sbjct: 701 QRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIET 760
Query: 470 LAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEII 507
+A S K +SNVV+K +L + Q II++I+
Sbjct: 761 VANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKIL 798
Score = 192 (72.6 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 67/259 (25%), Positives = 118/259 (45%)
Query: 323 LRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRC 382
L C D GSR +Q+ L P ++ ++ + +++ + LS GN+VI++
Sbjct: 544 LEFCKDQHGSRFIQRELATS--PA------SEKEVIFNEIRDDAIELSNDVFGNYVIQKF 595
Query: 383 LQKFPPDYTKD-LLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVL 441
+ F K+ L+++ N L+ C ++Q + Q+ L+ ++ + +
Sbjct: 596 FE-FGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQM 654
Query: 442 SEHSYGNYVVQYILGLKIP-QVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGE-EQS 499
+ GN+V+Q + IP + +++ L G + LS V+Q+ LLE G E
Sbjct: 655 IKDQNGNHVIQKAIET-IPIEKLPFILSSLTGHIYHLSTHSYGCRVIQR-LLEFGSSEDQ 712
Query: 500 TGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRR-----IRQTLYDLVVDNSPFLQS 554
I+NE+ I LI D YGNYVIQ Q I+Q + + V +N
Sbjct: 713 ESILNEL--KDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSK 770
Query: 555 HMYGKNVLAK--VRGNKNR 571
H + NV+ K + G+KN+
Sbjct: 771 HKFASNVVEKSILYGSKNQ 789
Score = 130 (50.8 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 56/237 (23%), Positives = 100/237 (42%)
Query: 345 PTRQQL---TQEQQSLLVSALKNI---TVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEI 398
P +QL + ++ S +LK+I ++ K HG+ I+R L P + + EI
Sbjct: 516 PLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEI 575
Query: 399 AENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLK 458
++ ++L+ D G ++Q + QK L+ N LS Y V+Q L
Sbjct: 576 RDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYI 635
Query: 459 IPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILD 518
++V +L+ + + ++V+QK + E+ I++ + H I L
Sbjct: 636 DSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGH--IYHLSTH 693
Query: 519 PYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKVRGNKNRFHNR 575
YG VIQ + L +L D P+L YG V+ V +++F N+
Sbjct: 694 SYGCRVIQRLLEFGSSEDQESILNELK-DFIPYLIQDQYGNYVIQYVL-QQDQFTNK 748
Score = 58 (25.5 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 36/148 (24%), Positives = 56/148 (37%)
Query: 48 PNQQDYHVEN--PSLQNPTTQDQLSGHLHYSNYP-Y---------DKSLAMEPSTCRCRT 95
PNQQD N P N +Q HY N+P Y + ++++
Sbjct: 291 PNQQDGPANNNFPPYMNGFPPNQFHQGPHYQNFPNYLIGSPSNFISQMISVQIPANEDTE 350
Query: 96 PESG-----LSRPSQFAAPR-PPLSQYLPYPIPLNQAQYSFINSLPTSFPLENHETIDLQ 149
+G +RPS ++P PP + P+ P N F+ P S P + + Q
Sbjct: 351 DSNGKKKKKANRPSSVSSPSSPPNNSPFPFAYP-NPMM--FMPPPPLSAPQQQQQQQQQQ 407
Query: 150 SGFDLQSGFEGLNIDGLGLPRPNNLTVQ 177
D Q + N + P PN + V+
Sbjct: 408 QQEDQQQQQQQEN-PYIYYPTPNPIPVK 434
Score = 42 (19.8 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 16 PPPENNSRHPVTTSQQSHVASQNLHLIPIYQKPNQQDYHVENPSLQNPT 64
PPP P++ QQ Q Q+ QQ ENP + PT
Sbjct: 390 PPP------PLSAPQQQQQQQQQQQ-----QEDQQQQQQQENPYIYYPT 427
>GENEDB_PFALCIPARUM|PFD0825c [details] [associations]
symbol:PFD0825c "RNA-binding protein of
pumilio/mpt5 family, putative" species:5833 "Plasmodium falciparum"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 242 (90.2 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 74/343 (21%), Positives = 156/343 (45%)
Query: 229 RHHHHRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMR 288
+H+ + + ++ I + + GC ++ KK+ E N + E+IL+ ++ D L
Sbjct: 181 KHNEEGQVHIDMSKVMYDIYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCP 240
Query: 289 HQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQ 348
+++ Q + L +E+ + L + G R++QK L++
Sbjct: 241 DIYGSYVAQSIFD-LKDEKYKERFTDEFLKHTSFLTL--HTYGCRLIQKSLES------- 290
Query: 349 QLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLD-LAT 407
L+ E + + L+ + +GNHVI++C++ P Y D++ I E L L++
Sbjct: 291 -LSDEYKCKIFKELQEDLIKYICHQNGNHVIQKCVEVLPCSYI-DIIINIIEEYLPFLSS 348
Query: 408 DRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVV 467
GC ++Q + E+Q RL ++ +++ ++ YGNYV+Q + +
Sbjct: 349 HAYGCRIVQRIYEIGNEQQINRLNEQIIKKIHLI-KNRYGNYVIQKCFEHSDDNIRFIIT 407
Query: 468 AQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRH-----PEIVQLILDPYGN 522
++ + LS K + N+++K LL+ + II +I+ I+ + D YGN
Sbjct: 408 DEIVNDIYKLSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGN 467
Query: 523 YVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+++Q + ++ R + +++N L+ YGK +L +
Sbjct: 468 FMMQKLLTTCR-KKERNFIIKTIIENLDKLKDETYGKYILRAI 509
Score = 125 (49.1 bits), Expect = 0.00017, P = 0.00017
Identities = 45/225 (20%), Positives = 106/225 (47%)
Query: 241 EELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLI 300
+EL+ +I + G +QK V+ I++I++ + + L L H ++Q++
Sbjct: 301 KELQEDLIKYICHQNGNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIY 360
Query: 301 GVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVS 360
+ NE+Q+ +L ++ + + + G+ V+QK + + R +T E
Sbjct: 361 EIGNEQQINRLNEQIIKK----IHLIKNRYGNYVIQKCFEHSDDNIRFIITDE------- 409
Query: 361 ALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIA-------ENCLDLATDRSGCC 413
+ N LS + ++I++ L K Y K ++++I +N +++ D G
Sbjct: 410 -IVNDIYKLSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNF 468
Query: 414 LLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLK 458
++Q + +++++ +I ++ N L + +YG Y+++ I L+
Sbjct: 469 MMQKLLTTCRKKERNFIIKTIIENLDKLKDETYGKYILRAINNLE 513
>UNIPROTKB|Q8I1R7 [details] [associations]
symbol:PFD0825c "RNA-binding protein of pumilio/mpt5
family, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 242 (90.2 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 74/343 (21%), Positives = 156/343 (45%)
Query: 229 RHHHHRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMR 288
+H+ + + ++ I + + GC ++ KK+ E N + E+IL+ ++ D L
Sbjct: 181 KHNEEGQVHIDMSKVMYDIYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCP 240
Query: 289 HQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQ 348
+++ Q + L +E+ + L + G R++QK L++
Sbjct: 241 DIYGSYVAQSIFD-LKDEKYKERFTDEFLKHTSFLTL--HTYGCRLIQKSLES------- 290
Query: 349 QLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLD-LAT 407
L+ E + + L+ + +GNHVI++C++ P Y D++ I E L L++
Sbjct: 291 -LSDEYKCKIFKELQEDLIKYICHQNGNHVIQKCVEVLPCSYI-DIIINIIEEYLPFLSS 348
Query: 408 DRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVV 467
GC ++Q + E+Q RL ++ +++ ++ YGNYV+Q + +
Sbjct: 349 HAYGCRIVQRIYEIGNEQQINRLNEQIIKKIHLI-KNRYGNYVIQKCFEHSDDNIRFIIT 407
Query: 468 AQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRH-----PEIVQLILDPYGN 522
++ + LS K + N+++K LL+ + II +I+ I+ + D YGN
Sbjct: 408 DEIVNDIYKLSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGN 467
Query: 523 YVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+++Q + ++ R + +++N L+ YGK +L +
Sbjct: 468 FMMQKLLTTCR-KKERNFIIKTIIENLDKLKDETYGKYILRAI 509
Score = 125 (49.1 bits), Expect = 0.00017, P = 0.00017
Identities = 45/225 (20%), Positives = 106/225 (47%)
Query: 241 EELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLI 300
+EL+ +I + G +QK V+ I++I++ + + L L H ++Q++
Sbjct: 301 KELQEDLIKYICHQNGNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIY 360
Query: 301 GVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVS 360
+ NE+Q+ +L ++ + + + G+ V+QK + + R +T E
Sbjct: 361 EIGNEQQINRLNEQIIKK----IHLIKNRYGNYVIQKCFEHSDDNIRFIITDE------- 409
Query: 361 ALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIA-------ENCLDLATDRSGCC 413
+ N LS + ++I++ L K Y K ++++I +N +++ D G
Sbjct: 410 -IVNDIYKLSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNF 468
Query: 414 LLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLK 458
++Q + +++++ +I ++ N L + +YG Y+++ I L+
Sbjct: 469 MMQKLLTTCRKKERNFIIKTIIENLDKLKDETYGKYILRAINNLE 513
>UNIPROTKB|H0YC97 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000529846 Bgee:H0YC97 Uniprot:H0YC97
Length = 227
Score = 212 (79.7 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 54/208 (25%), Positives = 110/208 (52%)
Query: 245 GRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLN 304
G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK +
Sbjct: 2 GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGS 61
Query: 305 EEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKN 364
EQ KL L+ + +L + + G RV+QK L+ P+ QQ+ E +V L
Sbjct: 62 LEQ--KLALAE-RIRGHVLSLALQMYGCRVIQKALEF--IPSDQQVINE----MVRELDG 112
Query: 365 ITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQE 424
+ K +GNHV+++C++ P + +++ D+ G ++Q+ + +
Sbjct: 113 HVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFK------GQDQYGNYVIQHVLEHGRP 166
Query: 425 EQKARLIADVVANAYVLSEHSYGNYVVQ 452
E K++++A++ N VLS+H + + VV+
Sbjct: 167 EDKSKIVAEIRGNVLVLSQHKFASNVVE 194
Score = 185 (70.2 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 59/225 (26%), Positives = 108/225 (48%)
Query: 285 ELMRHQSANHLIQ-KLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGE 343
E + Q + IQ KL E+ +L+ + + Q ++ D+ G+ V+QK + G
Sbjct: 6 EFSQDQHGSRFIQLKLERATPAER--QLVFNEIL--QAAYQLMVDVFGNYVIQKFFEFGS 61
Query: 344 YPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYT--KDLLEEIAEN 401
EQ+ L ++ +SL+ +G VI++ L+ P D +++ E+ +
Sbjct: 62 L--------EQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGH 113
Query: 402 CLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQ 461
L D++G ++Q CI Q Q + I D + YGNYV+Q++L P+
Sbjct: 114 VLKCVKDQNGNHVVQKCIECVQP-QSLQFIIDAFKG-----QDQYGNYVIQHVLEHGRPE 167
Query: 462 VTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEI 506
+ +VA++ G LS K +SNVV+KC+ + + +I+E+
Sbjct: 168 DKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 212
Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 56/214 (26%), Positives = 89/214 (41%)
Query: 367 VSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQ 426
+ S+ HG+ I+ L++ P + + EI + L D G ++Q EQ
Sbjct: 5 MEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQ 64
Query: 427 KARLIADVVANAYVLSEHSYGNYVVQYILGLKIP---QVTADVVAQLAGRYFALSLGKCS 483
K L + + L+ YG V+Q L IP QV ++V +L G +
Sbjct: 65 KLALAERIRGHVLSLALQMYGCRVIQKALEF-IPSDQQVINEMVRELDGHVLKCVKDQNG 123
Query: 484 SNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGR-RIRQTLY 542
++VVQKC+ E + QS I + + D YGNYVIQ + GR + +
Sbjct: 124 NHVVQKCI-ECVQPQSLQFIIDAFKGQ-------DQYGNYVIQHV--LEHGRPEDKSKIV 173
Query: 543 DLVVDNSPFLQSHMYGKNVLAKVRGNKNRFHNRV 576
+ N L H + NV+ K + +R V
Sbjct: 174 AEIRGNVLVLSQHKFASNVVEKCVTHASRTERAV 207
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 41/162 (25%), Positives = 83/162 (51%)
Query: 241 EELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDL--HEL--MRHQSANHLI 296
E +RG ++ +A GCR +QK + E P D + +++E++ +L H L ++ Q+ NH++
Sbjct: 70 ERIRGHVLSLALQMYGCRVIQKAL-EFIPSD-QQVINEMVRELDGHVLKCVKDQNGNHVV 127
Query: 297 QKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQS 356
QK I + + Q + I+ Q D G+ V+Q +L+ G P E +S
Sbjct: 128 QKCIECV-QPQSLQFIIDAFKGQ--------DQYGNYVIQHVLEHGR-P-------EDKS 170
Query: 357 LLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEI 398
+V+ ++ + LS+ ++V+++C+ L++E+
Sbjct: 171 KIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 212
Score = 117 (46.2 bits), Expect = 0.00024, P = 0.00024
Identities = 37/169 (21%), Positives = 77/169 (45%)
Query: 399 AENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLK 458
A + ++ + D+ G +Q + A ++ + +++ AY L +GNYV+Q
Sbjct: 1 AGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFG 60
Query: 459 IPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPE--IVQLI 516
+ + ++ G +L+L V+QK L +Q +INE++R + +++ +
Sbjct: 61 SLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ--VINEMVRELDGHVLKCV 118
Query: 517 LDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
D GN+V+Q + Q + ++ ++D F YG V+ V
Sbjct: 119 KDQNGNHVVQKCIECVQPQSLQ-----FIID--AFKGQDQYGNYVIQHV 160
>WB|WBGene00004242 [details] [associations]
symbol:puf-6 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0035188 GO:GO:0005737 GO:GO:0008285 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0048477
GO:GO:0000910 GO:GO:0003730 GO:GO:0007281 GO:GO:0006402
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:Z81507 PIR:T21080
RefSeq:NP_496773.1 ProteinModelPortal:O01322 SMR:O01322
STRING:O01322 EnsemblMetazoa:F18A11.1.1 EnsemblMetazoa:F18A11.1.2
GeneID:174947 KEGG:cel:CELE_F18A11.1 UCSC:F18A11.1.1 CTD:174947
WormBase:F18A11.1 HOGENOM:HOG000113900 InParanoid:O01322
OMA:RDIANHI NextBio:886152 Uniprot:O01322
Length = 485
Score = 203 (76.5 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 84/325 (25%), Positives = 153/325 (47%)
Query: 237 YSSIEE--LRGRIILVAKDEQGCRFLQKKVDERNPIDIE-MILSEVIDDLHE-------L 286
+ S+EE L G +I A D G +FL+ P+D E I V + L E L
Sbjct: 81 FISLEEVLLNGLLIDFAIDPSGVKFLEANY----PLDSEDQIRKAVFEKLTESTTLFVGL 136
Query: 287 MRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPT 346
++ N ++QKL+ + + +L+ ++ LL +C D RV+Q L ++
Sbjct: 137 CHSRNGNFIVQKLVELATPAEQRELLRQMIDGG--LLVMCKDKFACRVVQLALQKFDHSN 194
Query: 347 RQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIA--ENCLD 404
QL QE + ++A+ +S+ HVI+R +++ P D + ++ ++ +
Sbjct: 195 VFQLIQELSTFDLAAMCTDQISI-------HVIQRVVKQLPVDMWTFFVHFLSSGDSLMA 247
Query: 405 LATDRSGCCLLQYCIP-LAQEEQ----KAR------LIADVVANAYVLSEHSYGNYVVQY 453
+ D+ GC L+Q I LA+ + K R L+ +V N Y LS + + NYV+QY
Sbjct: 248 VCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQY 307
Query: 454 ILGLK-IPQVTADVVAQ--LAGRYFALSLGKCSSNVVQKCLL--------ESGEEQSTGI 502
++ I ++ D + L ++S K +S+V++ L E EE +G
Sbjct: 308 VIKSSGIMEMYRDTIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGY 367
Query: 503 INEIIRHPEIVQLIL-DPYGNYVIQ 526
+ ++ + + + ++L YGNYV+Q
Sbjct: 368 VKDVELNRDALDILLFHQYGNYVVQ 392
>TAIR|locus:2168529 [details] [associations]
symbol:PUM16 "pumilio 16" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB016890 IPI:IPI00533013 RefSeq:NP_200736.1 UniGene:At.65693
ProteinModelPortal:Q9FIE9 PRIDE:Q9FIE9 EnsemblPlants:AT5G59280.1
GeneID:836046 KEGG:ath:AT5G59280 TAIR:At5g59280
HOGENOM:HOG000152208 OMA:CTRNIAD Genevestigator:Q9FIE9
Uniprot:Q9FIE9
Length = 332
Score = 198 (74.8 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 62/287 (21%), Positives = 134/287 (46%)
Query: 282 DLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDA 341
D+ + + + ++ I VL+ + + + S + I + +GS+ +QKL+
Sbjct: 47 DIQRIFNFMTGSEDLKDDISVLDTGTLMWMASLMTSDCDYFMVITTNKNGSKTLQKLMG- 105
Query: 342 GEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAEN 401
++ + A+ + + + + ++V + ++ F D + + ++I
Sbjct: 106 --------MSDDMDVFFFEAIMRLFIHVMTDKYASYVTIQGMRVFQQDKRELMYDQILRY 157
Query: 402 CLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVAN-AYVLSEHSYGNYVVQYILGLKIP 460
LA D+ GC L I + + D+VAN A +LS +YGN+VVQ++L L+
Sbjct: 158 ACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAYGNFVVQHVLKLRDS 217
Query: 461 QVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEII--RHPEIVQLILD 518
+ T ++ +L G LS K S +V++ LLE+G+ ++ +++ + +++L
Sbjct: 218 RCTRNIADKLCGYCVELSFKKYGSYIVER-LLEAGDVPMATVVLDLLACKTEMLIRLARS 276
Query: 519 PYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
YGN+V+ A +++ Y LV P+ H+ ++ +K+
Sbjct: 277 EYGNFVVCKALELTNEILTADLFYGLVNRLMPY--RHLLHRSPRSKI 321
>WB|WBGene00004243 [details] [associations]
symbol:puf-7 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IGI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0035188 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477 GO:GO:0003723
GO:GO:0000910 GO:GO:0007281 eggNOG:COG5099
GeneTree:ENSGT00390000017241 EMBL:FO080145 HOGENOM:HOG000113900
PIR:T32538 RefSeq:NP_500820.1 PDB:3V71 PDBsum:3V71
ProteinModelPortal:O44169 SMR:O44169 STRING:O44169
EnsemblMetazoa:B0273.2.1 EnsemblMetazoa:B0273.2.2 GeneID:177332
KEGG:cel:CELE_B0273.2 UCSC:B0273.2.1 CTD:177332 WormBase:B0273.2
InParanoid:O44169 OMA:HAMQRIR NextBio:896304 Uniprot:O44169
Length = 485
Score = 202 (76.2 bits), Expect = 5.1e-13, P = 5.1e-13
Identities = 82/325 (25%), Positives = 153/325 (47%)
Query: 237 YSSIEE--LRGRIILVAKDEQGCRFLQKKVDERNPIDIE-MILSEVIDDLHE-------L 286
+ S+E+ L G++I A D G +FL+ P+D E I V + E L
Sbjct: 81 FISLEDVLLNGQLIDFAIDPSGVKFLEANY----PLDSEDQIRKAVFEKFTESTTLFVGL 136
Query: 287 MRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPT 346
++ N ++QKL+ + + +L+ ++ LL +C D RV+Q L ++
Sbjct: 137 CHSRNGNFIVQKLVELATPAEQRELLRQMIDGG--LLAMCKDKFACRVVQLALQKFDHSN 194
Query: 347 RQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIA--ENCLD 404
QL QE + ++A+ +S+ HVI+R +++ P D + ++ ++ +
Sbjct: 195 VFQLIQELSTFDLAAMCTDQISI-------HVIQRVVKQLPVDMWTFFVHFLSSGDSLMA 247
Query: 405 LATDRSGCCLLQYCIP-LAQEEQ----KAR------LIADVVANAYVLSEHSYGNYVVQY 453
+ D+ GC L+Q I LA+ + K R L+ +V N Y LS + + NYV+QY
Sbjct: 248 VCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQY 307
Query: 454 ILGLK-IPQVTADVVAQ--LAGRYFALSLGKCSSNVVQKCLL--------ESGEEQSTGI 502
++ I ++ D + L ++S K +S+V++ L E EE +G
Sbjct: 308 VIKSSGIMEMYRDTIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGY 367
Query: 503 INEIIRHPEIVQLIL-DPYGNYVIQ 526
+ ++ + + + ++L YGNYV+Q
Sbjct: 368 VKDVESNRDALDILLFHQYGNYVVQ 392
>TAIR|locus:2144010 [details] [associations]
symbol:PUM19 "pumilio 19" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB026632
eggNOG:COG5099 HOGENOM:HOG000152208 IPI:IPI00541936
RefSeq:NP_200826.1 UniGene:At.66750 ProteinModelPortal:Q9LSS8
SMR:Q9LSS8 EnsemblPlants:AT5G60180.1 GeneID:836140
KEGG:ath:AT5G60180 TAIR:At5g60180 InParanoid:Q9LSS8 OMA:NPTETSG
PhylomeDB:Q9LSS8 Genevestigator:Q9LSS8 Uniprot:Q9LSS8
Length = 327
Score = 194 (73.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 72/284 (25%), Positives = 132/284 (46%)
Query: 283 LHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAG 342
L LM +++I ++ ++ ++ + S + I GSR +QKLL G
Sbjct: 45 LFNLMTDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLL--G 102
Query: 343 EYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENC 402
+ + + + +A+ + ++ + ++V R + F K L E I +
Sbjct: 103 K-------SDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHA 155
Query: 403 LDLATDRSGCCLLQYCIPLAQEEQ-KARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQ 461
LDLA D+ GC L I A + + +L+ VV+NA LS + GN+VVQ++L L +
Sbjct: 156 LDLACDQHGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSR 215
Query: 462 VTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIR--HPEIVQLILDP 519
++ L G+ LS K S +V+K LLE EE ++ E++ +++L +
Sbjct: 216 CIHNIAVNLYGQCIELSFKKYGSYIVEK-LLEV-EESMVVVVVELLGCDGDRLMRLARNE 273
Query: 520 YGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQ--SHMYGKNV 561
+GN+V+ A ++ R+ + LV PF+ +G N+
Sbjct: 274 FGNFVVVKALRFTKEMRM-DLFWGLVQKLMPFIHLLRRSHGNNI 316
>UNIPROTKB|H0YDC5 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525997 Uniprot:H0YDC5
Length = 217
Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 40/154 (25%), Positives = 77/154 (50%)
Query: 353 EQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGC 412
EQ+ L ++ +SL+ +G VI++ L+ P D + L+T GC
Sbjct: 59 EQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSD----------QQVFALSTHPYGC 108
Query: 413 CLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAG 472
++Q + +Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G
Sbjct: 109 RVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRG 168
Query: 473 RYFALSLGKCSSNVVQKCLLESGEEQSTGIINEI 506
LS K +SNVV+KC+ + + +I+E+
Sbjct: 169 NVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 202
Score = 145 (56.1 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 51/202 (25%), Positives = 99/202 (49%)
Query: 251 AKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTK 310
++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK + EQ K
Sbjct: 4 SQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQ--K 61
Query: 311 LILSVVSSQQRLLRICDDLSGSRVMQKLLD------------AGEYPTR--QQLTQE--- 353
L L+ + +L + + G RV+QK L+ Y R Q++ +
Sbjct: 62 LALAE-RIRGHVLSLALQMYGCRVIQKALEFIPSDQQVFALSTHPYGCRVIQRILEHCLP 120
Query: 354 QQSL-LVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGC 412
Q+L ++ L T L + +GN+VI+ L+ P+ ++ EI N L L+ +
Sbjct: 121 DQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFAS 180
Query: 413 CLLQYCIPLAQEEQKARLIADV 434
+++ C+ A ++A LI +V
Sbjct: 181 NVVEKCVTHASRTERAVLIDEV 202
Score = 144 (55.7 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 57/208 (27%), Positives = 89/208 (42%)
Query: 370 SKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKAR 429
S+ HG+ I+ L++ P + + EI + L D G ++Q EQK
Sbjct: 4 SQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 63
Query: 430 LIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQK 489
L + + L+ YG V+Q L IP +D + FALS V+Q+
Sbjct: 64 LAERIRGHVLSLALQMYGCRVIQKALEF-IP---SDQ------QVFALSTHPYGCRVIQR 113
Query: 490 CLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGR-RIRQTLYDLVVDN 548
L +Q+ I+ E+ +H E QL+ D YGNYVIQ + GR + + + N
Sbjct: 114 ILEHCLPDQTLPILEELHQHTE--QLVQDQYGNYVIQHV--LEHGRPEDKSKIVAEIRGN 169
Query: 549 SPFLQSHMYGKNVLAKVRGNKNRFHNRV 576
L H + NV+ K + +R V
Sbjct: 170 VLVLSQHKFASNVVEKCVTHASRTERAV 197
>WB|WBGene00004239 [details] [associations]
symbol:puf-3 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0035046 "pronuclear
migration" evidence=IMP] [GO:0009992 "cellular water homeostasis"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 171 (65.3 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 70/296 (23%), Positives = 133/296 (44%)
Query: 247 IILVAKDEQGCRFLQKKVDERNPIDI-EMILSEVIDD---LHELMRHQSANHLIQKLIGV 302
++ A D+ GCRFLQ+ N D+ + + ++++D L + N +Q+++
Sbjct: 146 LVEFATDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNMFGNFFVQRVLEC 205
Query: 303 LNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSAL 362
N E+ L + + L +C D S RV+Q + + +L+ E + +
Sbjct: 206 SNTEEQEILTEHLATD---LYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTHL--- 259
Query: 363 KNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAE--NCLDLATDRSGCCLLQYCIP 420
V LS +GNHVI++ ++ P L++ A+ N + + D+ GC ++Q +
Sbjct: 260 ----VRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQSTVE 315
Query: 421 LAQEEQKAR-----------LIADVVANAYVLSEHSYGNYVVQYILGL-KIPQVTADVVA 468
+Q A+ L+A V N L+ + + NYVVQ+++ V D++
Sbjct: 316 TLSTDQYAQCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDIII 375
Query: 469 Q--LAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEI----IRHPEIVQLILD 518
+ L ++S K +S+VV+ + ++NEI I HP+ + LD
Sbjct: 376 EQCLLQNLLSMSQEKYASHVVEVAFECAPYRLVAEMMNEIFEGYIPHPDTNRDALD 431
>UNIPROTKB|Q9U2G4 [details] [associations]
symbol:puf-3 "Protein PUF-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 171 (65.3 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 70/296 (23%), Positives = 133/296 (44%)
Query: 247 IILVAKDEQGCRFLQKKVDERNPIDI-EMILSEVIDD---LHELMRHQSANHLIQKLIGV 302
++ A D+ GCRFLQ+ N D+ + + ++++D L + N +Q+++
Sbjct: 146 LVEFATDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNMFGNFFVQRVLEC 205
Query: 303 LNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSAL 362
N E+ L + + L +C D S RV+Q + + +L+ E + +
Sbjct: 206 SNTEEQEILTEHLATD---LYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTHL--- 259
Query: 363 KNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAE--NCLDLATDRSGCCLLQYCIP 420
V LS +GNHVI++ ++ P L++ A+ N + + D+ GC ++Q +
Sbjct: 260 ----VRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQSTVE 315
Query: 421 LAQEEQKAR-----------LIADVVANAYVLSEHSYGNYVVQYILGL-KIPQVTADVVA 468
+Q A+ L+A V N L+ + + NYVVQ+++ V D++
Sbjct: 316 TLSTDQYAQCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDIII 375
Query: 469 Q--LAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEI----IRHPEIVQLILD 518
+ L ++S K +S+VV+ + ++NEI I HP+ + LD
Sbjct: 376 EQCLLQNLLSMSQEKYASHVVEVAFECAPYRLVAEMMNEIFEGYIPHPDTNRDALD 431
>POMBASE|SPBC56F2.08c [details] [associations]
symbol:SPBC56F2.08c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBC56F2.08c GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000288 eggNOG:COG5099
OrthoDB:EOG4MWCFG PIR:T40536 RefSeq:NP_596709.1
ProteinModelPortal:O60059 EnsemblFungi:SPBC56F2.08c.1
GeneID:2540913 KEGG:spo:SPBC56F2.08c NextBio:20802028
Uniprot:O60059
Length = 661
Score = 172 (65.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 77/344 (22%), Positives = 153/344 (44%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDER--NPIDIEMILSEVIDDLHELMRHQSANHLIQ 297
+E LR R +K R ++K +D +IE+I ++DD+ EL N ++Q
Sbjct: 155 VETLRSRQFEASK----LREIRKNIDSGFYTQEEIEVIARSMLDDVAELSSDYLGNTVVQ 210
Query: 298 KLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSL 357
K ++ + + +L ++ + I +G+ QK++D T++Q L
Sbjct: 211 KFFEYCSDP-IKEAMLERIAPYLAAIGI--HKNGTWAAQKIIDVAS-------TEKQMDL 260
Query: 358 LVSALKNITVSLSKSPHGNHVIKRCLQ-KFPPDYTKDLLEEIAENCLDLATDRSGCCLLQ 416
+V L+ T L GN+V + CL+ K+P + L E +A +C ++ R G ++
Sbjct: 261 IVKHLRPYTALLYFDQFGNYVAQCCLRFKYPKNTF--LFEVMARHCCEIGQSRFGARAIR 318
Query: 417 YCIPL--AQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVA-QLAGR 473
C+ A EQ+A ++A ++ N+++L+ +S G ++ ++L + ++A LA
Sbjct: 319 ACLENENATFEQQALVVASIIINSHLLATNSNGMLLLTWLLDNSFFRNRHRLLAIHLATH 378
Query: 474 YFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQ 533
K +S ++ K + E +S ++ + + E ++ Y++Q D +
Sbjct: 379 LHTTCTHKLASTLIFKLINNKQEPESRNLLLKNLFFSEKDNVL-----TYILQ---DQAV 430
Query: 534 GRRIRQTLYDLVVDNSPFL-QSHMYGKNVLAKVRGNKNRFHNRV 576
G + FL Q H+ K VL + N + R+
Sbjct: 431 GPSFIHKVITYPSIGREFLAQFHLVIKRVLINIHAQPNAVYCRL 474
>POMBASE|SPCC1682.08c [details] [associations]
symbol:SPCC1682.08c "RNA-binding protein Mcp2"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPCC1682.08c GO:GO:0007126 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 eggNOG:COG5099
EMBL:AB189990 PIR:T41065 RefSeq:NP_587801.1
ProteinModelPortal:O74438 EnsemblFungi:SPCC1682.08c.1
GeneID:2539137 KEGG:spo:SPCC1682.08c OMA:FNDSANG OrthoDB:EOG4QNR4B
NextBio:20800309 Uniprot:O74438
Length = 703
Score = 171 (65.3 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 69/329 (20%), Positives = 156/329 (47%)
Query: 248 ILVAKDEQGCRFLQKKVDERNPIDIEM-ILSEVIDDLHELMRHQSANHLIQKLIGVLNEE 306
I+V+ D+Q FLQ+K+ + + D++ I+ +I +H LM ++ N L+Q+
Sbjct: 367 IIVSNDQQSSIFLQQKL-KISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQRCFEHGTAP 425
Query: 307 QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366
Q+ ++ +++ + +L++ D G V+QK +D +T++ + ++ L +T
Sbjct: 426 QIRQMGSAMLGN---MLKLATDPFGCHVVQKAID--------NVTEDIKLAMMDELF-LT 473
Query: 367 VSLSKSPH-GNHVIKRCLQKFPPDYTKDLLEEIAENCL-----DLATDRSGCCLLQYCIP 420
+ ++ H HV ++ + +Y +++ + N L ++A +G ++Q
Sbjct: 474 IDVTIMHHYACHVWQKLFETQWYEYPVNVMNRV-NNALRGKWHEVAVGENGSLVVQNMFE 532
Query: 421 LAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLG 480
E+ K I +++ + ++ +GN+VVQ+++ + V+ L R S+
Sbjct: 533 NCVEKDKRECIEEIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSID 592
Query: 481 KCSSNVVQKCLLESGEEQSTGI-INEII-------RHPEIVQLILDPYGNYVIQTAWDVS 532
+ +S V++K + +SG + + + +I R P ++ + D YGNY+IQ +
Sbjct: 593 QFASKVIEKAI-KSGPKNFISLYLKQITNARVDRTRQP-LIDIASDQYGNYLIQQIIQLG 650
Query: 533 QGRRIRQTLYDLVVDNSPFLQSHMYGKNV 561
Q + + + + L+ YG+ V
Sbjct: 651 QPAE-KNLVITHIKKHMVSLRGSKYGQKV 678
Score = 146 (56.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 54/252 (21%), Positives = 110/252 (43%)
Query: 325 ICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQ 384
+ +D S +Q+ L Y +Q + ++S + + ++ GN +++RC +
Sbjct: 369 VSNDQQSSIFLQQKLKISSYDMKQNIVDS----IISQIHPLMLNR----FGNFLVQRCFE 420
Query: 385 KFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEH 444
+ + + N L LATD GC ++Q I E+ K ++ ++ V H
Sbjct: 421 HGTAPQIRQMGSAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDELFLTIDVTIMH 480
Query: 445 SYGNYVVQYILGLKIPQVTADVVAQ----LAGRYFALSLGKCSSNVVQKCLLESGEEQST 500
Y +V Q + + + +V+ + L G++ +++G+ S VVQ E+
Sbjct: 481 HYACHVWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKR 540
Query: 501 GIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKN 560
I EII H + + +GN+V+Q + QG +++ + D +++ + +
Sbjct: 541 ECIEEIIFHLD--GIARGQWGNWVVQHMVENGQGEDLKRVI-DALLNRAVEFSIDQFASK 597
Query: 561 VLAKV--RGNKN 570
V+ K G KN
Sbjct: 598 VIEKAIKSGPKN 609
>WB|WBGene00022257 [details] [associations]
symbol:puf-11 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009792 GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000003 GO:GO:0003723 EMBL:FO081731
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
RefSeq:NP_741425.1 ProteinModelPortal:Q8IU00 SMR:Q8IU00
IntAct:Q8IU00 STRING:Q8IU00 PaxDb:Q8IU00 EnsemblMetazoa:Y73B6BL.38
GeneID:177406 KEGG:cel:CELE_Y73B6BL.38 UCSC:Y73B6BL.38 CTD:177406
WormBase:Y73B6BL.38 InParanoid:Q8IU00 OMA:HVVKCGG NextBio:896676
Uniprot:Q8IU00
Length = 505
Score = 164 (62.8 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 70/296 (23%), Positives = 132/296 (44%)
Query: 247 IILVAKDEQGCRFLQKKVDERNPIDI-EMILSEVIDD---LHELMRHQSANHLIQKLIGV 302
++ A D+ GCRFLQ+ + DI + + ++++D L + N +Q+++
Sbjct: 149 LVEFATDKNGCRFLQEHYPTESDNDIHQKLFRKLVEDRAIFLSLCCNMFGNFFVQRVLEC 208
Query: 303 LNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSAL 362
N E+ L + S L +C D S RV+Q + + +L+ E + +
Sbjct: 209 SNTEEQEILTEHLASD---LYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTYL--- 262
Query: 363 KNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAE--NCLDLATDRSGCCLLQYCIP 420
V LS +GNHVI++ ++ P ++E A+ N + + D+ GC ++Q +
Sbjct: 263 ----VRLSIDQNGNHVIQKIVKTLPVSAWSFVVEFFADDDNLIHVCQDKYGCRVIQSTVE 318
Query: 421 LAQEEQKAR-----------LIADVVANAYVLSEHSYGNYVVQYILGL-KIPQVTADVVA 468
+ A L++ V N L+ + + NYVVQ+++ V DV+
Sbjct: 319 TLSSDTYAECYQQRVVLLRSLMSGVTRNCSQLASNEFANYVVQHVIKCGDAMAVYRDVII 378
Query: 469 Q--LAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEI----IRHPEIVQLILD 518
+ L ++S K +S+VV+ + + ++NEI I HP+ + LD
Sbjct: 379 EQCLLQNLLSMSQEKYASHVVEVAFGCAPCRLAAEMMNEIFEGYIPHPDTNRDALD 434
Score = 41 (19.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 19/87 (21%), Positives = 34/87 (39%)
Query: 49 NQQDYHVENPSLQNPTTQDQLSGHLHYSNYPYDKSLAMEPSTCRCRTPESGLSRPSQFAA 108
N + N ++ + ++S ++ PY + + S R TP + +R Q A
Sbjct: 38 NSSNIWTPNRNVDSSMGFQRVSSTPKNASTPYRQGFGGQFSKWRTSTPMTTPARHPQQAL 97
Query: 109 PRPPLSQYLPYPIPLNQAQYSFINSLP 135
L P LN + S+ +LP
Sbjct: 98 RLIDLENNASSPNTLNSSTRSYKCTLP 124
>WB|WBGene00004241 [details] [associations]
symbol:puf-5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P
granule" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0035188
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477
GO:GO:0003723 GO:GO:0000910 EMBL:Z49967 GO:GO:0043186
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
PIR:T22634 RefSeq:NP_495814.1 ProteinModelPortal:Q20757 SMR:Q20757
STRING:Q20757 PaxDb:Q20757 EnsemblMetazoa:F54C9.8 GeneID:174373
KEGG:cel:CELE_F54C9.8 UCSC:F54C9.8 CTD:174373 WormBase:F54C9.8
InParanoid:Q20757 OMA:MISICIS NextBio:883756 Uniprot:Q20757
Length = 553
Score = 160 (61.4 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 67/313 (21%), Positives = 138/313 (44%)
Query: 245 GRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDD----LHELMRHQSANHLIQKLI 300
G +I A D G +FL++ E + ++ +L + + + L R + N +IQK +
Sbjct: 151 GSLIDFAMDRTGVKFLERHFPEDHDNEMHFVLFDKLTEQGAVFTSLCRSAAGNFIIQKFV 210
Query: 301 GVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVS 360
++ +L+ + + L+ +C D RV+Q + + +L ++ +S
Sbjct: 211 EHATLDEQERLVRKMCDNG--LIEMCLDKFACRVVQMSIQKFDVSIAMKLVEK-----IS 263
Query: 361 ALKNITVSLSKSPHGNHVIKRCLQKFPPD----YTKDLLEEIAENCLDLATDRSGCCLLQ 416
+L + + + HV+++ ++ P + K L + +N + + D+ GC L+Q
Sbjct: 264 SLDFLPLCTDQC--AIHVLQKVVKLLPISAWSFFVKFLCRD--DNLMTVCQDKYGCRLVQ 319
Query: 417 YCIPLAQEEQKAR-----------LIADVVANAYVLSEHSYGNYVVQYILGLK-IPQVTA 464
I + K L+ V N + LS + + NYVVQY++ + ++
Sbjct: 320 QTIDKLSDNPKLHCFNTRLQLLHGLMTSVARNCFRLSSNEFANYVVQYVIKSSGVMEMYR 379
Query: 465 DVVAQ--LAGRYFALSLGKCSSNVVQKCLL--------ESGEEQSTGIINEIIRHPEIVQ 514
D + + L ++S K +S+VV+ L E +E G + + + + +
Sbjct: 380 DTIIEKCLLRNILSMSQDKYASHVVEGAFLFAPPLLLSEMMDEIFDGYVKDQETNRDALD 439
Query: 515 LIL-DPYGNYVIQ 526
++L YGNYV+Q
Sbjct: 440 ILLFHQYGNYVVQ 452
>TAIR|locus:2144711 [details] [associations]
symbol:PUM21 "pumilio 21" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB020752
EMBL:AL353994 eggNOG:COG5099 IPI:IPI00537619 PIR:T49937
RefSeq:NP_196523.1 UniGene:At.54788 ProteinModelPortal:Q9LXC5
SMR:Q9LXC5 EnsemblPlants:AT5G09610.1 GeneID:830820
KEGG:ath:AT5G09610 TAIR:At5g09610 HOGENOM:HOG000153154
InParanoid:Q9LXC5 OMA:HQEPGES PhylomeDB:Q9LXC5
ProtClustDB:CLSN2916885 Genevestigator:Q9LXC5 Uniprot:Q9LXC5
Length = 517
Score = 162 (62.1 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 58/224 (25%), Positives = 97/224 (43%)
Query: 357 LLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQ 416
LL A+ L +G +I ++ + L + E L LA +GC L
Sbjct: 289 LLFCAVDTNFFLLMSDKYGRGLIIPAIRAVDKTKKESLYKLTYEYTLHLARLETGCLALN 348
Query: 417 YCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFA 476
+ + + + V NA LS YG +VVQ IL L+ P T + +L G +F
Sbjct: 349 NVLQEIRGIYRDLIFECVANNADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFR 408
Query: 477 LSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHP-EIVQLILDPYGNYVIQTAWDVSQGR 535
L++ + S VV+KCL ++ E + E V++ D +GN+V+Q+A V + +
Sbjct: 409 LAMERQGSYVVEKCLKSDFARDQ--VLEEFRGNAKEWVRMTTDKFGNFVVQSALRVMKEK 466
Query: 536 RIRQTLYDLVVDNSPFLQSHMYGKNVLAKVRGNKNRFHNRVAMW 579
+R L + V L+ H +GK + + R + W
Sbjct: 467 EMRPLLREFVEK----LRPH-FGKMEIGRGRNTLRVIQEEIVGW 505
Score = 41 (19.5 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 27/99 (27%), Positives = 38/99 (38%)
Query: 20 NNSRHPVTTSQQSHVASQNLHLIPIYQKPNQQDYHVENPSLQNPTTQDQLSGHLHYSNYP 79
NN P+ T A NL L Y N Q+ E+ + P GH+ +++
Sbjct: 122 NNPNPPLLT------AFDNLRL---YANYNHQEPG-ESSNNNYPNLNVYNVGHISAASF- 170
Query: 80 YDKSLAMEPSTCRCRTPESGLSRPSQFAAPRPPLSQYLP 118
+ PS+ P+ SR S P PPLS P
Sbjct: 171 --NAPPFTPSSLT--QPDDSSSRYSGKPFPPPPLSFVSP 205
>WB|WBGene00004240 [details] [associations]
symbol:puf-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000016078 EMBL:FO081656 PIR:T33752 RefSeq:NP_500301.1
UniGene:Cel.28747 ProteinModelPortal:Q8I723 SMR:Q8I723
EnsemblMetazoa:M4.2 GeneID:191754 KEGG:cel:CELE_M4.2 UCSC:M4.2
CTD:191754 WormBase:M4.2 InParanoid:Q8I723 NextBio:950224
Uniprot:Q8I723
Length = 420
Score = 148 (57.2 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 55/241 (22%), Positives = 118/241 (48%)
Query: 265 DERNPIDIEMILSEVI--DDLHELMRHQSANHLIQKLIGV-LNEEQMTKLILSVVSSQQR 321
DE + + L +VI D L E M+ ++ +Q + E K+ +V+ +
Sbjct: 139 DEHGNVADTVTLDDVIQMDSLMEFMKDKNGCRFLQDQYSEDCHVESHQKIFEQLVADRVI 198
Query: 322 LLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT--VSLSKS---PHGN 376
L C + G+ +Q++L+ + ++ + + +L S L + V L+ + +GN
Sbjct: 199 FLDQCKHMFGNFFVQRVLECSDAEEQKIIVEYLAIVLASRLASELRGVDLTHACIDQNGN 258
Query: 377 HVIKRCLQKFPPDYTKDLLEEIAE--NCLDLATDRSGCCLLQYCIP-LAQEEQKA---RL 430
HVI++ L+ PP + L+E + N +++ D+ C ++Q + L++ EQ RL
Sbjct: 259 HVIQQLLKTLPPSSWQFLVEFFSRDTNFVEVCEDKYVCRVIQSTLETLSKREQLVALRRL 318
Query: 431 IADVVANAYVLSEHSYGNYVVQYILGLKIPQVTA--DVVAQ--LAGRYFALSLGKCSSNV 486
+ ++ N L+ + + NYVV++++ ++T DV+ + L ++S K +S++
Sbjct: 319 VGVIIRNCGQLASNEFANYVVRHVIKCDDAEMTIYRDVIIEKCLLQNLLSMSQEKYASHM 378
Query: 487 V 487
+
Sbjct: 379 I 379
Score = 45 (20.9 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 18 PENNSRHPVTTSQQSHVASQNLHLIPIYQKPNQQDYH--VENPSLQNPTTQ 66
P N++HP+ + + S +Q+P+ Y PS+ PT +
Sbjct: 49 PHRNAQHPLGSKCPNAPKSNKATATSYHQRPDTPRYQQRASTPSM-TPTAR 98
>ASPGD|ASPL0000066087 [details] [associations]
symbol:AN7474 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304
eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:XP_680743.1
ProteinModelPortal:Q5AW56 EnsemblFungi:CADANIAT00000567
GeneID:2869548 KEGG:ani:AN7474.2 HOGENOM:HOG000182368 OMA:RACLESH
Uniprot:Q5AW56
Length = 1175
Score = 143 (55.4 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 60/273 (21%), Positives = 121/273 (44%)
Query: 253 DEQGCRFLQKKVDERN-PI-DIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTK 310
D R ++K++D N I +IE ++ ++ EL N ++QKL +E +
Sbjct: 653 DAPRLRDIRKRIDNGNCSIQEIEETAIAMLPEIAELASDYLGNTVVQKLFEYSSEPIKER 712
Query: 311 LILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLS 370
+++ + L I +G+ QK++D + P Q ++V AL+ TV L
Sbjct: 713 ILVPIAP---HLGEIGVHKNGTWAAQKIIDVAKTPA-------QMRMIVDALRPYTVPLF 762
Query: 371 KSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPL--AQEEQKA 428
+GN+V++ CL +F Y + E + ++A R G ++ C+ A ++Q+
Sbjct: 763 LDQYGNYVLQCCL-RFGSPYNDFVFETMLSRMWEIAQGRFGARAMRACLESHHATKDQQR 821
Query: 429 RLIADVVANAYVLSEHSYGNYVVQYILGL-KIPQVTADVVAQLAGRYFALSLGKCSSNVV 487
L A + ++ L+ ++ G ++ + L P + +L L K + V
Sbjct: 822 MLAAAIALHSVQLATNANGALLLTWFLDTCTFPHRRTVLAPRLVPHLVHLCTHKVAYLTV 881
Query: 488 QKCLLESGEEQSTGII-NEIIRHP--EIVQLIL 517
K + + E ++ I+ + P E+++ IL
Sbjct: 882 LKVINQRNEPEARNIVLKALFFSPGDEVLEKIL 914
>POMBASE|SPAC4G9.05 [details] [associations]
symbol:mpf1 "meiotic PUF family protein 1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPAC4G9.05 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0003729 eggNOG:COG5099
OrthoDB:EOG4QNR4B EMBL:AB248102 PIR:T38864 RefSeq:NP_593687.1
ProteinModelPortal:Q10238 EnsemblFungi:SPAC4G9.05.1 GeneID:2543134
KEGG:spo:SPAC4G9.05 NextBio:20804161 Uniprot:Q10238
Length = 581
Score = 140 (54.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 84/384 (21%), Positives = 162/384 (42%)
Query: 212 GSSTNASSRYN--N-----FYARARHHHHRT-SYSS-IEELRGRI--ILVAKDEQGCRFL 260
G STN + Y N F + H T YS+ I + + I I+ D+ L
Sbjct: 214 GESTNKNLFYEFPNGTTEPFEKNSVHSGKETLQYSATISKWKAMIEQIIFQNDQAASLSL 273
Query: 261 QKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQ 320
Q+++ + D +++ ++ LM+++ N LIQK E Q+ + ++
Sbjct: 274 QQQLKNEDIEDNINLINTILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQSFSYFL---KK 330
Query: 321 RLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIK 380
+ + D GS V+QK L+ YP R T +L+ ++ + +L + H HV
Sbjct: 331 HVKELSIDAFGSHVLQKSLEI--YPER--FTN---NLIEELIECLPATLMQR-HSCHV-- 380
Query: 381 RCLQKFPPDYTKDLLEEIAENC--------LDLATDRSGCCLLQYCIPLAQEEQKARLIA 432
QKF K L++ I ++ L ++ G ++Q +E+ K +
Sbjct: 381 --WQKFFETRRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLD 438
Query: 433 DVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLL 492
+++ N + +GN+V+Q+I+ ++ L + S + +S VV++ L
Sbjct: 439 EIINNMDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVERALR 498
Query: 493 ESGEEQSTGIINEIIRH----PEIV--QLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVV 546
+ EI P I ++ + YGNY++Q V+ +I + + +
Sbjct: 499 VCHVTFFDRYVKEITTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQIN-LMAEHLK 557
Query: 547 DNSPFLQSHMYGKNVLAKVRGNKN 570
+ L+ H YG+ + A V +K+
Sbjct: 558 KHMVSLRGHKYGQRIAALVEKSKS 581
Score = 41 (19.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 120 PIPLNQAQYSFINSLPTSFPLENHETID 147
PI L YSFI+ SF + +E +D
Sbjct: 188 PIDLG---YSFISPFSMSFASKGNEILD 212
>SGD|S000003851 [details] [associations]
symbol:JSN1 "Member of the Puf family of RNA-binding
proteins" species:4932 "Saccharomyces cerevisiae" [GO:0051654
"establishment of mitochondrion localization" evidence=IMP]
[GO:0034629 "cellular protein complex localization" evidence=IMP]
[GO:0032473 "external side of mitochondrial outer membrane"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001313 InterPro:IPR012677 InterPro:IPR016024
Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SMART:SM00360 SGD:S000003851
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006943
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:L47993
GO:GO:0051654 GO:GO:0000288 EMBL:Z49591 eggNOG:COG5099
GO:GO:0034629 EMBL:L43493 PIR:S57112 RefSeq:NP_012624.1
ProteinModelPortal:P47135 SMR:P47135 DIP:DIP-1281N IntAct:P47135
MINT:MINT-405099 STRING:P47135 PaxDb:P47135 PeptideAtlas:P47135
EnsemblFungi:YJR091C GeneID:853553 KEGG:sce:YJR091C CYGD:YJR091c
GeneTree:ENSGT00690000103065 HOGENOM:HOG000113136 OMA:CLEAHDI
OrthoDB:EOG4MWCFG NextBio:974290 Genevestigator:P47135
GermOnline:YJR091C GO:GO:0032473 Uniprot:P47135
Length = 1091
Score = 142 (55.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 63/257 (24%), Positives = 114/257 (44%)
Query: 253 DEQGCRFLQKKVDER--NPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTK 310
D R L+K +D + ++IE + ++D+L EL N ++QKL + + K
Sbjct: 590 DPPKLRELRKSIDSNAFSDLEIEQLAIAMLDELPELSSDYLGNTIVQKLFE--HSSDIIK 647
Query: 311 LILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLS 370
I+ +S+ L + +G+ QK++ P +Q+ Q Q + K+ L
Sbjct: 648 DIMLRKTSKY-LTSMGVHKNGTWACQKMITMAHTP--RQIMQVTQGV-----KDYCTPLI 699
Query: 371 KSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIP---LAQEEQK 427
GN+VI+ C+ KF + + + E I N + +R G ++ C+ + EQ
Sbjct: 700 NDQFGNYVIQ-CVLKFGFPWNQFIFESIIANFWVIVQNRYGARAVRACLEAHDIVTPEQS 758
Query: 428 ARLIADVVANAYVLSEHSYGNYVVQYILGLKI-PQVTADVVAQLAGRYFALSLGKCSSNV 486
L A +V A LS +S G +V + L + P + + +L R L + +S
Sbjct: 759 IVLSAMIVTYAEYLSTNSNGALLVTWFLDTSVLPNRHSILAPRLTKRIVELCGHRLASLT 818
Query: 487 VQKCLLESGEEQSTGII 503
+ K L G++ + II
Sbjct: 819 ILKVLNYRGDDNARKII 835
Score = 44 (20.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 23/101 (22%), Positives = 45/101 (44%)
Query: 121 IPLNQAQYSFI-NSLPTSFPLENHETIDLQSGFDLQSGFEGLNIDGLGLPRPNNLTVQR- 178
+P++Q F+ NS LEN+ +LQ LQ E L + + N+++
Sbjct: 427 LPMHQQPPQFLLNSQGLPLGLENN---NLQPQPLLQ---EQLFNGAVTFQQQGNVSIPVF 480
Query: 179 NLVXXXXXXXXXXXXSPSYSNLSHGFLSDHHHLGSSTNASS 219
N S +SN+ HG+ +++ G++ N+++
Sbjct: 481 NQQSQQSQHQNHSSGSAGFSNVLHGYNNNNSMHGNNNNSAN 521
Score = 44 (20.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 32/140 (22%), Positives = 55/140 (39%)
Query: 26 VTTSQQSHVASQNLHLIPIYQKPNQQDYHVENPSLQNPTTQDQLSGHLHYSN-YPYDKSL 84
VT QQ +V+ IP++ + +QQ H +N S + + L G+ + ++ + + +
Sbjct: 467 VTFQQQGNVS------IPVFNQQSQQSQH-QNHSSGSAGFSNVLHGYNNNNSMHGNNNNS 519
Query: 85 AMEPSTCRCRTPESGLSRPSQFAAPRPPLSQYLPYPIPLNQAQYSFINSLPTSFPLENHE 144
A E C P ++ L + + N +Y INSL L +
Sbjct: 520 ANEKEQCPFPLPPPNVNEKEDL------LREIIEL-FEANSDEYQ-INSLIKK-SLNHKG 570
Query: 145 TIDLQSGFDLQSGFEGLNID 164
T D Q+ L G D
Sbjct: 571 TSDTQNFGPLPEPLSGREFD 590
Score = 40 (19.1 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 162 NIDGLGLPRPNNLTVQRNL 180
+IDG+ + RP +LT +++
Sbjct: 118 SIDGVTMDRPGSLTPPQDM 136
>WB|WBGene00001402 [details] [associations]
symbol:fbf-2 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IPI] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0030154 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011 GO:GO:0007283
GO:GO:0051729 GO:GO:0040035 GO:GO:0003730 GO:GO:0045132
GO:GO:0040027 GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078 EMBL:FO080717
PIR:T16128 RefSeq:NP_495220.1 PDB:3K5Q PDB:3K5Y PDB:3K5Z PDB:3K61
PDB:3K62 PDB:3K64 PDB:3QG9 PDB:3QGB PDB:3QGC PDB:3V6Y PDB:3V74
PDBsum:3K5Q PDBsum:3K5Y PDBsum:3K5Z PDBsum:3K61 PDBsum:3K62
PDBsum:3K64 PDBsum:3QG9 PDBsum:3QGB PDBsum:3QGC PDBsum:3V6Y
PDBsum:3V74 ProteinModelPortal:Q09312 SMR:Q09312 MINT:MINT-3385835
STRING:Q09312 EnsemblMetazoa:F21H12.5 GeneID:174017
KEGG:cel:CELE_F21H12.5 UCSC:F21H12.5 CTD:174017 WormBase:F21H12.5
InParanoid:Q09312 OMA:FALENID EvolutionaryTrace:Q09312
NextBio:882143 Uniprot:Q09312
Length = 632
Score = 129 (50.5 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 49/194 (25%), Positives = 92/194 (47%)
Query: 253 DEQGCRFLQKKVDERNPIDIEMILSEVID-D--LHELMRHQSANHLIQKLIGVLNEEQMT 309
D+ CR +Q + + + + L + + D L + Q+ANH+IQK++ V+ +
Sbjct: 283 DKFACRVIQSSLQNMD-LSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNW- 340
Query: 310 KLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQ-QLTQEQQSLLVSALKNITVS 368
+ I+ V++ + L +IC D G RV+Q +++ + LT Q+L AL+ + S
Sbjct: 341 EFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTS 400
Query: 369 LSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGC----CLLQYCIPLAQE 424
V RC + +Y +++ I N DLA R C CL++ + L+QE
Sbjct: 401 ---------VTNRCQELATNEYANYIIQHIVSND-DLAVYRE-CIIEKCLMRNLLSLSQE 449
Query: 425 EQKARLIADVVANA 438
+ + ++ +A
Sbjct: 450 KFASHVVEKAFLHA 463
Score = 124 (48.7 bits), Expect = 0.00028, P = 0.00028
Identities = 78/331 (23%), Positives = 144/331 (43%)
Query: 281 DDLHELMRHQSANHLIQKLIGV---LNEEQMTKL---ILSVVSSQQRLLRICDDLSGSRV 334
DD +L + N+L+Q +IG+ N++ TK + + +SSQ + +C D RV
Sbjct: 232 DDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQ--MTDMCLDKFACRV 289
Query: 335 MQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSP-HGNHVIKRCLQKFPPDYTKD 393
+Q L + +L Q L + I + + ++ H + + ++ D
Sbjct: 290 IQSSLQNMDLSLACKLVQA----LPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVD 345
Query: 394 LLEEIAENCLDLATDRSGCCLLQYCIP-------------LAQE-EQKA--RLIADVVAN 437
+ E+ + +D+ GC ++Q I AQ ++A RL+ V
Sbjct: 346 FVAT-PEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNR 404
Query: 438 AYVLSEHSYGNYVVQYILGLKIPQVTADVVAQ--LAGRYFALSLGKCSSNVVQKCLLESG 495
L+ + Y NY++Q+I+ V + + + L +LS K +S+VV+K L +
Sbjct: 405 CQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAP 464
Query: 496 EEQSTGIINEI----IRHPEIVQLILD-----PYGNYVIQT----AWDVSQGRR-IRQTL 541
E +++EI I HP+ + LD +GNYV+Q D GRR ++
Sbjct: 465 LELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGG 524
Query: 542 YDLVVDNSPFLQSHMYGKNVLAKVRGNKNRF 572
YD + +L+ ++ + + K R +RF
Sbjct: 525 YDHAISFQDWLKK-LHSR--VTKERHRLSRF 552
>CGD|CAL0000283 [details] [associations]
symbol:orf19.4262 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0034629 "cellular protein complex localization" evidence=IEA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0051654
"establishment of mitochondrion localization" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000283 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AACQ01000021
EMBL:AACQ01000022 eggNOG:COG5099 RefSeq:XP_720570.1
RefSeq:XP_720698.1 ProteinModelPortal:Q5AGB7 GeneID:3637600
GeneID:3637766 KEGG:cal:CaO19.11738 KEGG:cal:CaO19.4262
Uniprot:Q5AGB7
Length = 492
Score = 127 (49.8 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 72/308 (23%), Positives = 141/308 (45%)
Query: 271 DIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLS 330
++E + ++D+L EL N ++QKL L E + KL++ V L ++ +
Sbjct: 5 ELEELCLAMLDELPELSYDYLGNTIVQKLF-TLVESSLVKLMM-VKEVAPYLTQLGIHKN 62
Query: 331 GSRVMQKLLDAGEYPTRQQLTQEQQSLLVSA-LKNITVSLSKSPHGNHVIKRCLQKFPPD 389
G+ +QK+++ + QQ L+ A LK V L GN+VI+ C+ KF
Sbjct: 63 GTWAIQKIINLCH-------SDYQQMYLIGASLKPYAVKLFNDQFGNYVIQGCI-KFGSP 114
Query: 390 YTKDLLEEIAENCLDLATDRSGC-CL---LQYC------IPLAQEEQKARLIADVVAN-A 438
+ + E + +N L+++ R G C+ L+ C P+ E+ L+A ++ A
Sbjct: 115 FNDFVFEAMLDNFLEISVGRFGARCIRTILESCHDSSSTSPVTNEQ--VLLVAGLIIEFA 172
Query: 439 YVLSEHSYGNYVVQYILG-LKIPQVTADVV-AQLAGRYFALSLGKCSSNVVQKCLLESGE 496
L+ +S G+ ++ + L K +++ ++ AL + K ++ V K L +
Sbjct: 173 NELAVNSNGSLLITWYLDTFKDCDSKIELLMSKFLPNIRALCVHKLANLTVLKILNNRID 232
Query: 497 EQS-TGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQ-TLYDLVVDNSPFLQS 554
++S ++ I + E ++ IL N TA + + + TL DLV + P ++
Sbjct: 233 DKSRVATMDAIFNNKETLEYILQESDNSNT-TAGPLFIYKILSNPTLADLVNQHIPTIRK 291
Query: 555 HMYGKNVL 562
+ N++
Sbjct: 292 ILMELNIV 299
>WB|WBGene00001401 [details] [associations]
symbol:fbf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IGI;IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0043073 "germ cell nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0010608 "posttranscriptional regulation of gene expression"
evidence=IGI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 123 (48.4 bits), Expect = 0.00035, P = 0.00035
Identities = 49/194 (25%), Positives = 91/194 (46%)
Query: 253 DEQGCRFLQKKVDERNPIDIEMILSEVID-D--LHELMRHQSANHLIQKLIGVLNEEQMT 309
D+ CR +Q + + + + L + + D L + Q+ANH+IQK++ V+ +
Sbjct: 281 DKFACRVIQSSLQNMD-LSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNW- 338
Query: 310 KLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPT-RQQLTQEQQSLLVSALKNITVS 368
+ I+ V++ + L +IC D G RV+Q +++ + LT Q L AL+ + S
Sbjct: 339 EFIVDFVATPEHLRQICFDKYGCRVVQTIIEKLTADSINVDLTSAAQHLRERALQRLMTS 398
Query: 369 LSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGC----CLLQYCIPLAQE 424
V RC + +Y +++ I N DLA R C CL++ + L+QE
Sbjct: 399 ---------VTNRCQELATNEYANYIIQHIVSND-DLAVYRE-CIIEKCLMRNLLSLSQE 447
Query: 425 EQKARLIADVVANA 438
+ + ++ +A
Sbjct: 448 KFASHVVEKAFLHA 461
>UNIPROTKB|Q9N5M6 [details] [associations]
symbol:fbf-1 "Fem-3 mRNA-binding factor 1" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 123 (48.4 bits), Expect = 0.00035, P = 0.00035
Identities = 49/194 (25%), Positives = 91/194 (46%)
Query: 253 DEQGCRFLQKKVDERNPIDIEMILSEVID-D--LHELMRHQSANHLIQKLIGVLNEEQMT 309
D+ CR +Q + + + + L + + D L + Q+ANH+IQK++ V+ +
Sbjct: 281 DKFACRVIQSSLQNMD-LSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNW- 338
Query: 310 KLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPT-RQQLTQEQQSLLVSALKNITVS 368
+ I+ V++ + L +IC D G RV+Q +++ + LT Q L AL+ + S
Sbjct: 339 EFIVDFVATPEHLRQICFDKYGCRVVQTIIEKLTADSINVDLTSAAQHLRERALQRLMTS 398
Query: 369 LSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGC----CLLQYCIPLAQE 424
V RC + +Y +++ I N DLA R C CL++ + L+QE
Sbjct: 399 ---------VTNRCQELATNEYANYIIQHIVSND-DLAVYRE-CIIEKCLMRNLLSLSQE 447
Query: 425 EQKARLIADVVANA 438
+ + ++ +A
Sbjct: 448 KFASHVVEKAFLHA 461
>POMBASE|SPBP35G2.14 [details] [associations]
symbol:SPBP35G2.14 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBP35G2.14 GO:GO:0005829 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:NP_595389.2
EnsemblFungi:SPBP35G2.14.1 GeneID:2541323 NextBio:20802433
Uniprot:Q9P789
Length = 1065
Score = 124 (48.7 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 55/221 (24%), Positives = 100/221 (45%)
Query: 276 LSEVIDDLHELMRHQSANHLIQKLIGVLNEE-QMTKLILSVVSSQQRLLRICDDLSGSRV 334
L EV DDL +++ L K+ +LN ++T + S + + R
Sbjct: 694 LREVYDDLINVVQSFGFKDL-SKIYQILNAACELTDFAAQIPSISKAFSSRRLNAPKLRQ 752
Query: 335 MQKLLDAGEYPTRQQLTQEQ-QSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKD 393
++K +D G TQE+ + + ++ L ++ LS GN V+++ L + D K+
Sbjct: 753 VRKRIDNG------LCTQEEVEDIAINWLDEVS-DLSSDHLGNTVVQK-LFDYCSDPVKE 804
Query: 394 L-LEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYV--LSEHSYGNYV 450
+ LE IA + + ++G Q + +A E + RLIA + Y+ L +GNYV
Sbjct: 805 MMLERIAPHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIAKHL-QPYIPLLFADQFGNYV 863
Query: 451 VQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCL 491
VQ L P + V + +++ ++ + S V+ CL
Sbjct: 864 VQTCLKFGAP-MNDFVFEAILNQFWVIAQSRYGSRAVRACL 903
Score = 49 (22.3 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 25/95 (26%), Positives = 38/95 (40%)
Query: 59 SLQNPTTQDQLSGHLHYSNYPYDKSLAMEPSTCRCRTPESGLSRPSQFAAPRPPLSQYLP 118
SL NP D S +S ++ A +T R + S P S
Sbjct: 336 SLLNPVGLDHFSAASGWSR-DFNHLPASSLATARSSLTGNAKSGIDSSVTGMP--SDNYA 392
Query: 119 YPIPLNQAQYSFINSLPTSFPLENHETIDLQSGFD 153
+ + A++ F SL +SF L N+ T L +GF+
Sbjct: 393 RVVESSTAEF-FDPSLASSFGLTNYRTKPLTTGFN 426
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 579 553 0.00097 119 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 83
No. of states in DFA: 617 (66 KB)
Total size of DFA: 308 KB (2157 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 54.55u 0.09s 54.64t Elapsed: 00:00:02
Total cpu time: 54.58u 0.09s 54.67t Elapsed: 00:00:02
Start: Mon May 20 23:57:11 2013 End: Mon May 20 23:57:13 2013