BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048735
(579 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LVC3|PUM12_ARATH Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2
Length = 596
Score = 268 bits (684), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 138/333 (41%), Positives = 215/333 (64%), Gaps = 8/333 (2%)
Query: 237 YSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLI 296
Y+SI E RG+I +AKD+ GCRFLQ+ E++ DIEMI +E+ID + ELM N+L+
Sbjct: 272 YNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLV 331
Query: 297 QKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQS 356
QKL+ V NE+Q +++ S+ L++I D+ G+R +QK+++ + +E+ S
Sbjct: 332 QKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAK-------REEEIS 384
Query: 357 LLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQ 416
+++SALK+ V L K+ +GNHV++RCLQ P K L E +C++LATDR GCC+LQ
Sbjct: 385 IIISALKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQ 444
Query: 417 YCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFA 476
C+ ++ EQK L++++ +NA +LS+ +GNYV+QY+ L++ T +++ QL G Y
Sbjct: 445 KCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTE 504
Query: 477 LSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRR 536
LS+ KCSSNVV+KCL + ++ II E+I + + Q++LDPYGNYVIQ A S+G
Sbjct: 505 LSMQKCSSNVVEKCLKLADDKHRARIIRELINYGRLDQVMLDPYGNYVIQAALKQSKG-N 563
Query: 537 IRQTLYDLVVDNSPFLQSHMYGKNVLAKVRGNK 569
+ L D + N L+++ YGK VL+ + K
Sbjct: 564 VHALLVDAIKLNISSLRTNPYGKKVLSALSSKK 596
>sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana
GN=APUM7 PE=3 SV=2
Length = 650
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 219/380 (57%), Gaps = 20/380 (5%)
Query: 195 PSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARARHHHHRT-----SYSSIEELRGRIIL 249
P S S F SD + + + +N A ++ + T S ++ +++G + L
Sbjct: 281 PMVSKCSEPFSSDESFFMNGKSIDHQRSNTRALMSNNGNPTEICHPSLPNMCDIQGYVYL 340
Query: 250 VAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMT 309
+AKD+ GCRFLQ+ DE +D +I +EVI + ELM N+L+QKL+ V EEQ T
Sbjct: 341 MAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKLLDVCTEEQRT 400
Query: 310 KLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSL 369
+++L +L+RI + G+RV+Q+L++ + +Q SL+ AL+ + L
Sbjct: 401 QIVLVATEEPGQLIRISLNAYGTRVVQRLVETIR-------SGKQISLVKLALRPGFLDL 453
Query: 370 SKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKAR 429
K +GNHVI+RCLQ + K + + + C ++AT R GCC+LQ CI + +Q+ +
Sbjct: 454 IKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQREK 513
Query: 430 LIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQK 489
LIA++ N+ +L++ +GNY VQ+++ L+IP A ++AQL G Y LS+ K SS++V++
Sbjct: 514 LIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVER 573
Query: 490 CLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDL----- 544
CL+ E + I+ E++ P QL+ DPY N+VIQ A ++G + +L ++
Sbjct: 574 CLMHCPESRPQ-IVRELVSVPHFDQLLQDPYANFVIQAALAATKG-PLHASLVEVIRPHS 631
Query: 545 VVDNSPFLQSHMYGKNVLAK 564
++ N+P+ + ++ +N+L K
Sbjct: 632 ILRNNPYCK-RIFSRNLLKK 650
>sp|Q9LM20|PUM8_ARATH Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana
GN=APUM8 PE=3 SV=2
Length = 515
Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/329 (37%), Positives = 202/329 (61%), Gaps = 10/329 (3%)
Query: 236 SYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHL 295
S + E +G + +AKD+ GCRFLQ ++ + +D +I SEVI + ELM N+L
Sbjct: 192 SLPKVSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYL 251
Query: 296 IQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQ 355
+QKL+ V NEEQ T++IL V S +L+RI + G+RV+Q+L+++ + T++Q
Sbjct: 252 MQKLLDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIK-------TRKQI 304
Query: 356 SLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLL 415
SL+ SAL+ ++L + +GNHVI+RCLQ + + + E+ + C+D+AT R GCC+L
Sbjct: 305 SLVKSALRPGFLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVL 364
Query: 416 QYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYF 475
Q CI + Q+ +L+ ++ N+ L++ YGNY VQ++L L+ A ++AQL G Y
Sbjct: 365 QKCIAYSSGLQREKLVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYV 424
Query: 476 ALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGR 535
LS+ K SS++V++CL E + I+ E+I P LI DPY N+VIQ A V++G
Sbjct: 425 ELSMQKFSSHMVERCLTHCPESRPQ-IVRELISVPHFDILIQDPYANFVIQAALAVTKG- 482
Query: 536 RIRQTLYDLVVDNSPFLQSHMYGKNVLAK 564
+ TL +++ +S L+++ Y K + ++
Sbjct: 483 SLHATLVEVIRPHS-ILRNNPYCKRIFSR 510
>sp|Q9LDW3|PUM11_ARATH Pumilio homolog 11 OS=Arabidopsis thaliana GN=APUM11 PE=3 SV=2
Length = 556
Score = 208 bits (530), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 201/332 (60%), Gaps = 17/332 (5%)
Query: 238 SSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQ 297
+S+ + G + L+AKD+ GCR LQK VDE N +D+ +I EVI+++ EL N+LIQ
Sbjct: 237 ASMVDSYGSVYLMAKDQLGCRLLQKFVDEGNFVDVMIIFKEVINNVIELGTDPFGNYLIQ 296
Query: 298 KLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSL 357
KLI V NEEQ T++++ + S L++I + G+RV+QKL++ T+EQ SL
Sbjct: 297 KLIEVCNEEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIET-------VTTKEQISL 349
Query: 358 LVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQY 417
+ SAL +SL + +GNHVI CL+ F P+ K +LE + C+++AT R GCC+LQ
Sbjct: 350 VKSALVPGFLSLFRELNGNHVILNCLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQR 409
Query: 418 CIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFAL 477
C+ + EQ +L+ ++ N+ +L++ +GNY+VQYI+ K+ V +V+ +L G Y L
Sbjct: 410 CVSYSVGEQHEKLVDEISRNSLLLAQDPFGNYLVQYIIEKKVGGV--NVLFELRGNYVKL 467
Query: 478 SLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRI 537
+ K S+VV+KCL E +S I+NE++ L+ DPY NYVIQ A ++G +
Sbjct: 468 ATQKFGSHVVEKCLRYYPESRSQ-IVNELVSVLNFGYLLQDPYANYVIQCALSKTKG-FV 525
Query: 538 RQTLYDLV-----VDNSPFLQSHMYGKNVLAK 564
R +L + V + +P+ + ++ KN+ K
Sbjct: 526 RASLVEKVRRYENLKMTPYCK-RIFSKNLWKK 556
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/261 (19%), Positives = 107/261 (40%), Gaps = 37/261 (14%)
Query: 312 ILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSK 371
+ S+V S + + D G R++QK +D G + + +E + N + L
Sbjct: 236 LASMVDSYGSVYLMAKDQLGCRLLQKFVDEGNFVDVMIIFKE--------VINNVIELGT 287
Query: 372 SPHGNHVIKRCLQKFPPDYTKDLLEEIAEN---CLDLATDRSGCCLLQYCIPLAQEEQKA 428
P GN++I++ ++ + +L + + ++ + G ++Q I +++
Sbjct: 288 DPFGNYLIQKLIEVCNEEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIETVTTKEQI 347
Query: 429 RLIADVVANAYV-LSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVV 487
L+ + ++ L GN+V+ L P ++ ++ + V+
Sbjct: 348 SLVKSALVPGFLSLFRELNGNHVILNCLKFFSPNDNKFILEAATKFCIEIATTRHGCCVL 407
Query: 488 QKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVD 547
Q+C+ S EQ +++EI R+ + L DP+GNY++Q + G
Sbjct: 408 QRCVSYSVGEQHEKLVDEISRNSLL--LAQDPFGNYLVQYIIEKKVG------------- 452
Query: 548 NSPFLQSHMYGKNVLAKVRGN 568
G NVL ++RGN
Sbjct: 453 ----------GVNVLFELRGN 463
>sp|Q1PFN9|PUM9_ARATH Pumilio homolog 9 OS=Arabidopsis thaliana GN=APUM9 PE=2 SV=1
Length = 564
Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 124/332 (37%), Positives = 200/332 (60%), Gaps = 19/332 (5%)
Query: 239 SIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQK 298
S+ E+ G + L+AKD+ GCR LQK V+E + ++IL +ID + EL N+++QK
Sbjct: 246 SMVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFGNYIVQK 305
Query: 299 LIGVLNEEQMTKLILSVVSSQQR-LLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSL 357
L V +EEQ T LI+SV++S R L+RIC + G+RV+QK+++ + T++Q +L
Sbjct: 306 LFDVSDEEQRT-LIVSVLTSNPRELIRICLNTYGTRVVQKMIETVK-------TKQQIAL 357
Query: 358 LVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQY 417
+ S LK ++L K +GNHVI+ CLQ P+ + +LE + C ++A R GCC+LQ
Sbjct: 358 VKSGLKPGFLALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQC 417
Query: 418 CIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFAL 477
CI + Q+ RL+A++ N+ LS+ +GNYVVQY++ ++ V ++ Q Y L
Sbjct: 418 CISNSVGLQRERLVAEISRNSLHLSQDPFGNYVVQYLIDQQVSAVK--LLVQFRMHYAEL 475
Query: 478 SLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRI 537
+ K SS+V++KCL + E ++ I+ E++ P L+ DPY NYVIQTA V++G +
Sbjct: 476 ATQKFSSHVIEKCLRKYPESRAE-IVRELLCVPNFEYLLQDPYANYVIQTALSVTKG-PV 533
Query: 538 RQTLYDLV-----VDNSPFLQSHMYGKNVLAK 564
R L V + +SP+ + ++ K +L K
Sbjct: 534 RAKLVAKVYRYGKLHSSPYCKK-IFSKTILKK 564
>sp|Q09829|YAD3_SCHPO Pumilio domain-containing protein C4G8.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC4G8.03c PE=4 SV=1
Length = 780
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 178/324 (54%), Gaps = 17/324 (5%)
Query: 245 GRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLN 304
G + + KD+ GCR+LQK +DE ++ + E+ + +LM N++ QKL +
Sbjct: 465 GHLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYAS 524
Query: 305 EEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKN 364
EQ ++ + + ++ IC +L G+R MQ ++D + + EQ SLL+ +
Sbjct: 525 REQKLSMLNGI---GEGIVDICSNLYGTRSMQNIID-------KLTSNEQISLLLKIIIP 574
Query: 365 ITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQE 424
+L+ +G HV+++C+ KFPP+ + L + EN + LAT+R GCC+LQ C+
Sbjct: 575 SLTTLACDNNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNG 634
Query: 425 EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSS 484
+ + RL+ ++ + +L +++YGNY+VQ++L L I T ++ + G LSL K SS
Sbjct: 635 DIQERLVNSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSS 694
Query: 485 NVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQ---TAWDVSQGRRIRQTL 541
N +++C+ + ++ E + P I QL+ D Y NYV+Q D SQ I +++
Sbjct: 695 NAIEQCIRTASPSTREQMLQEFLSFPNIEQLLDDCYANYVMQRFLNVADESQKFLILRSI 754
Query: 542 YDLVVDNSPFLQSHMYGKNVLAKV 565
++ P +Q+ +G+++LAK+
Sbjct: 755 SHVI----PKIQNTRHGRHILAKL 774
>sp|Q9LP21|PUM10_ARATH Putative pumilio homolog 10 OS=Arabidopsis thaliana GN=APUM10 PE=3
SV=2
Length = 528
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 195/327 (59%), Gaps = 14/327 (4%)
Query: 239 SIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQK 298
S+ E+ G + L+A+D+ GCR LQK V+E +D ++I E+ID + EL N+++QK
Sbjct: 210 SMVEIYGSVNLMARDQIGCRALQKLVEEGTVLDSKVIFLEIIDHVVELSMDPLGNYIVQK 269
Query: 299 LIGVLNEEQMTKLILSVVSSQQR-LLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSL 357
L+ V +EEQ T +I+SV++S+ R L++IC + +G+RV+QK++ + T++Q +L
Sbjct: 270 LLVVSDEEQRT-MIVSVLTSKPRELIKICLNTNGTRVIQKMIKTVK-------TKQQIAL 321
Query: 358 LVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQY 417
+ SAL+ + L +G HV++ CL+ P+ K ++E E C LAT + GC +LQ
Sbjct: 322 VKSALEPGFLVLVNDSNGYHVLQSCLEFLVPNDNKFVVEAATEYCAQLATHQYGCYVLQC 381
Query: 418 CIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFAL 477
+ Q RL+A++ ++ LS+ +GNYVVQ ++ ++ V +++ L
Sbjct: 382 SLINTVGLQHERLVAEISRDSLRLSQDPFGNYVVQCLIDQQVSSV--NLLLPFRTHCIEL 439
Query: 478 SLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRI 537
+ K SS+V++KCL + E ++ I+ E++ +P QL+ DPY NYVIQTA V++G +
Sbjct: 440 ATQKFSSHVIEKCLRKYPESRAE-IVRELLSYPNFEQLLQDPYANYVIQTALSVTKG-AV 497
Query: 538 RQTLYDLVVDNSPFLQSHMYGKNVLAK 564
R L + V LQS+ Y K + +K
Sbjct: 498 RARLVEKVKRFGK-LQSNPYCKKIFSK 523
>sp|Q92359|YDHE_SCHPO Pumilio domain-containing protein C6G9.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC6G9.14 PE=4 SV=1
Length = 681
Score = 172 bits (437), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 179/320 (55%), Gaps = 11/320 (3%)
Query: 247 IILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEE 306
I+ KD+ GCR+LQ+ ++++N I+ + +E L LM N+L QKL +E
Sbjct: 348 ILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHASEA 407
Query: 307 QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366
Q + I + +L+ I ++ G+R +QK++D P +Q S +V+AL+
Sbjct: 408 QRSTFIQIIA---PKLVPISFNMHGTRALQKIIDLVSSP-------DQISCIVNALRPNV 457
Query: 367 VSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQ 426
V L+K +GNHVI++CL KF + + + + I E+ LD++T R GCC++Q C A Q
Sbjct: 458 VLLTKDLNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQ 517
Query: 427 KARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNV 486
+L+ +V +A L + ++GNYV+QY+L L P T +++ + ALS K SSNV
Sbjct: 518 IEQLVEHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNV 577
Query: 487 VQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVV 546
++KC+ + +I+E++ + +L+ D + NYVIQTA D + ++ R L + +
Sbjct: 578 MEKCIFFAPAAIKEKLISELMDEKHLPKLLRDSFANYVIQTALDNASVKQ-RAELVERIK 636
Query: 547 DNSPFLQSHMYGKNVLAKVR 566
P +++ G+ +L+K+
Sbjct: 637 PLIPSIKNTPCGRRILSKLE 656
>sp|P25339|PUF4_YEAST Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUF4 PE=1 SV=2
Length = 888
Score = 165 bits (417), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 111/326 (34%), Positives = 179/326 (54%), Gaps = 25/326 (7%)
Query: 234 RTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSAN 293
R + + +++ G I + KD+ GCRFLQK++D + I E D ELM N
Sbjct: 555 RFADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGN 614
Query: 294 HLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQE 353
+LIQKL+ + EQ +++L+ +SS + I + G+R +QKL++ + T E
Sbjct: 615 YLIQKLLEEVTTEQ--RIVLTKISSPH-FVEISLNPHGTRALQKLIECIK-------TDE 664
Query: 354 QQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCC 413
+ ++V +L+ TV LSK +GNHVI++CLQ+ P+ + + + I+++C+D+AT R GCC
Sbjct: 665 EAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCC 724
Query: 414 LLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQ----VTADVVAQ 469
+LQ C+ EQ L ++A L+ +GNYVVQYI+ + + T +V
Sbjct: 725 VLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHL 784
Query: 470 LAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRH---PEIVQLILDPYGNYVIQ 526
L R LS+ K SNV++K L + S +I EI+ + I L+ D YGNYV+Q
Sbjct: 785 LKPRAIELSIHKFGSNVIEKILKTA--IVSEPMILEILNNGGETGIQSLLNDSYGNYVLQ 842
Query: 527 TAWDVSQG------RRIRQTLYDLVV 546
TA D+S +R+ + + L+V
Sbjct: 843 TALDISHKQNDYLYKRLSEIVAPLLV 868
>sp|Q4PSD1|PUM14_ARATH Pumilio homolog 14 OS=Arabidopsis thaliana GN=APUM14 PE=2 SV=1
Length = 518
Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 119/370 (32%), Positives = 190/370 (51%), Gaps = 15/370 (4%)
Query: 200 LSHGFLSDHHHLGSSTNASSRYNNFYARARHHHHRTSYS-SIEELRGRIILVAKDEQGCR 258
L++GFL+D S S Y N + +++ R + + + AKD++
Sbjct: 158 LNNGFLNDVPS-SSRDRVSDYYTNRFGYEGYNYWRGNEGFDYNQCQASFSAFAKDKEMSE 216
Query: 259 FLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSS 318
L + + ++ I + +I D+ ELM + ++Q L+ + EQ+ +L+ V
Sbjct: 217 RLGMSIFQGTKETVDAIYNGLIGDICELMVDPYGSDVVQLLMRRCSSEQIVQLVDIVTQQ 276
Query: 319 QQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHV 378
+ + IC D G+ +Q LL + Q+ + +V ++ + + LSKS H V
Sbjct: 277 MFQFVNICIDSLGTNAIQVLLTCINERAKDQIPR-----IVDVVRTVALQLSKSNHAIFV 331
Query: 379 IKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIP---LAQEEQKARLIADVV 435
I C + FP + + LLE I +NC +A D+ GCCLLQ C + E + RLI + +
Sbjct: 332 ILACFRLFPL-HCRLLLELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNLEIRQRLIMEAI 390
Query: 436 ANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESG 495
ANA L + YGNYVVQYI+ L + +V QL G Y L+ K S+ VQK LL+
Sbjct: 391 ANALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQK-LLKLR 449
Query: 496 EEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQSH 555
S I+ +++R EI L+LDP+GNYVIQTAW VS+ +R+ L + N P ++ +
Sbjct: 450 WIDSRVIVIDLLR--EIDTLLLDPFGNYVIQTAWFVSKD-DVRRMLRYHIERNIPMMRCN 506
Query: 556 MYGKNVLAKV 565
+G VL K+
Sbjct: 507 KFGNKVLEKL 516
>sp|Q9FMH4|PUM13_ARATH Putative pumilio homolog 13 OS=Arabidopsis thaliana GN=APUM13 PE=3
SV=1
Length = 527
Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 193/381 (50%), Gaps = 26/381 (6%)
Query: 188 ATTNNASPSYSNLSHGFLSDHHHLGSSTNASSRYNNFYARARHHHHRTSYSSIEELRGRI 247
A+ NN S Y+N+ G N S R N ++ + SS+E RG
Sbjct: 168 ASRNNVSDYYTNI----------FGYGVNNSWRSN----EGCTYNQDQAASSMENGRGSY 213
Query: 248 ILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQ 307
+A D + L+K + I+MI +I + ELM N +++ LIG + EQ
Sbjct: 214 FSIATDRVWSKELEKTIFVGTKETIDMIFDGLIVGICELMVDPFGNDVVKLLIGKCSSEQ 273
Query: 308 MTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITV 367
+ ++ V + + IC + G+ +Q LL + Q+ + ++ A+ ++ +
Sbjct: 274 IILIVDVVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPR-----IMDAISSVAL 328
Query: 368 SLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIP---LAQE 424
L+++ + +VI C + F + LLE ++++C +A D++GCCLLQ C +
Sbjct: 329 QLTRNTNAKYVILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNH 388
Query: 425 EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSS 484
E + RLI++V+ +A L + +GNYVVQY++ L T +V +L Y L+ K S
Sbjct: 389 EIRQRLISEVIEHALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGS 448
Query: 485 NVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDL 544
+VVQK L G + S I+ +++R I L+LDP+GNYVIQTAW VS+ +RQ L
Sbjct: 449 HVVQKLLKLRGID-SKLIVVDLLR--GIDTLLLDPFGNYVIQTAWFVSK-EDVRQMLRYY 504
Query: 545 VVDNSPFLQSHMYGKNVLAKV 565
+ N ++ + +G +L K+
Sbjct: 505 IERNIRLMRCNKFGNKILEKL 525
>sp|O81465|PUM15_ARATH Pumilio homolog 15 OS=Arabidopsis thaliana GN=APUM15 PE=3 SV=1
Length = 477
Score = 152 bits (383), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 165/310 (53%), Gaps = 20/310 (6%)
Query: 236 SYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHL 295
+Y + +R ++ AKD LQ + + I+ I +I + ELM + +
Sbjct: 144 AYGYMYGIRNTLLSRAKDGIESHMLQYVIAKGLKETIDKIFDNLISHVCELMLDYYGHKV 203
Query: 296 IQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQ 355
+KL+ +EQ+T+++ V+ +R+C G+ +Q L+ R ++EQ
Sbjct: 204 FRKLMEKCTDEQITRVLDIVLEEPFEFVRLCVHTHGTHAIQGLM-------RSLCSEEQI 256
Query: 356 SLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLL 415
S + L +++ L+K + VI C +F P +T+ LLE I +NC +A D++GCC+L
Sbjct: 257 SRFMETLCYVSLLLTKDVIAHRVILFCFNQFSPSHTRYLLEVIVQNCYQVAIDQNGCCML 316
Query: 416 QYCIPLAQEEQKARLIADVVANAYVLSEHSYG----------NYVVQYILGLKIPQVTAD 465
+ I + E + LI ++++ A L + YG NYVVQY+L LK +VT+
Sbjct: 317 KKLIRQSSRELRDPLIKEIISIAVRLCGNCYGTLTPKSLLVRNYVVQYLLRLKDYEVTSA 376
Query: 466 VVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVI 525
+ L G Y LS K S+VVQKC LES E S II E++ +I L++DPYG+YVI
Sbjct: 377 LSKHLDGNYVQLSYDKYGSHVVQKC-LESREFSSRRIIAELL--SDIDSLLVDPYGDYVI 433
Query: 526 QTAWDVSQGR 535
QTAW VS+ R
Sbjct: 434 QTAWIVSEVR 443
>sp|Q9SS47|PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2
Length = 1003
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 175/339 (51%), Gaps = 17/339 (5%)
Query: 232 HHRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQS 291
+++T + E+ G +I + D+ G RF+Q+K++ + I E++ LM
Sbjct: 654 NNKTRSLELSEIVGHVIEFSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVF 713
Query: 292 ANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLT 351
N++IQK +Q +L V +L + + G RV+QK L+ E
Sbjct: 714 GNYVIQKFFEHGTTKQRKELAEQVTG---HVLALSLQMYGCRVIQKALEVVEL------- 763
Query: 352 QEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSG 411
EQQ+ +V L + +GNHVI++C+++ P D+ + ++ L L+T G
Sbjct: 764 -EQQARMVKELDGSVMKCVHDQNGNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYG 822
Query: 412 CCLLQYCIPLAQEEQKARLIADVVANAY-VLSEHSYGNYVVQYILGLKIPQVTADVVAQL 470
C ++Q + + + R+I + + ++ L++ YGNYV+Q+I+ P ++++ +L
Sbjct: 823 CRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKL 882
Query: 471 AGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPE----IVQLILDPYGNYVIQ 526
AG+ +S K +SNVV+KCL G E+ ++NE++ + + + ++ DP+GNYV+Q
Sbjct: 883 AGQIVKMSQQKFASNVVEKCLTFGGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQ 942
Query: 527 TAWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ + + L + V + L+ + YGK+++A+V
Sbjct: 943 KVLETCDDQSLALILSRIKVHLNA-LKRYTYGKHIVARV 980
>sp|Q8TB72|PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2
Length = 1066
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 174/331 (52%), Gaps = 15/331 (4%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ +L G I+ ++D+ G RF+Q+K++ P + +M+ +E++ ++LM N++IQK
Sbjct: 724 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 783
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ +Q L + + +L + + G RV+QK L++ + QQ+ E +V
Sbjct: 784 FEFGSLDQKLALATRI---RGHVLPLALQMYGCRVIQKALES--ISSDQQVISE----MV 834
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 835 KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRIL 894
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
EQ ++ ++ + L + YGNYV+Q++L P+ + +V+++ G+ ALS
Sbjct: 895 EHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQ 954
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEII-----RHPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q D+++
Sbjct: 955 HKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEP 1014
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1015 AQ-RKIIMHKIRPHITTLRKYTYGKHILAKL 1044
>sp|Q2VB19|PUM1_CHICK Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1
Length = 1189
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 173/335 (51%), Gaps = 23/335 (6%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 906
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ L + + +L + + G RV+QK L+ P QQ+ E +V
Sbjct: 907 FEFGSLEQKLALAERI---RGHVLSLALQMYGCRVIQKALEF--IPPDQQVINE----MV 957
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQ--- 416
L + K +GNHV+++C++ P + +++ L+T GC ++Q
Sbjct: 958 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 1017
Query: 417 -YCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYF 475
+C+P EQ ++ ++ + L + YGNYV+Q++L P+ + +VA++ G
Sbjct: 1018 EHCLP----EQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVL 1073
Query: 476 ALSLGKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWD 530
LS K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q D
Sbjct: 1074 VLSQHKFASNVVEKCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMID 1133
Query: 531 VSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
V++ + R+ + + + L+ + YGK++LAK+
Sbjct: 1134 VAEPAQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 1167
>sp|Q5R5X3|PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1
Length = 1186
Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 173/335 (51%), Gaps = 25/335 (7%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 905
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ L + + +L + + G RV+QK L+ + +QQ+ +V
Sbjct: 906 FEFGSLEQKLALAERI---RGHVLSLALQMYGCRVIQKALEF--------IPSDQQNEMV 954
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQ--- 416
L + K +GNHV+++C++ P + +++ L+T GC ++Q
Sbjct: 955 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 1014
Query: 417 -YCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYF 475
+C+P +Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G
Sbjct: 1015 EHCLP----DQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVL 1070
Query: 476 ALSLGKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWD 530
LS K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q D
Sbjct: 1071 VLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMID 1130
Query: 531 VSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
V++ + R+ + + + L+ + YGK++LAK+
Sbjct: 1131 VAEPGQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 1164
>sp|Q80U58|PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2
Length = 1066
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 174/331 (52%), Gaps = 15/331 (4%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ +L G I+ ++D+ G RF+Q+K++ P + +++ +E++ ++LM N++IQK
Sbjct: 724 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKF 783
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ +Q L + + +L + + G RV+QK L++ + QQ+ E +V
Sbjct: 784 FEFGSLDQKLALATRI---RGHVLPLALQMYGCRVIQKALES--ISSDQQVISE----MV 834
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + +++ L+T GC ++Q +
Sbjct: 835 KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRIL 894
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
EQ ++ ++ + L + YGNYV+Q++L P+ + +V+++ G+ ALS
Sbjct: 895 EHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQ 954
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEII-----RHPEIVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q D+++
Sbjct: 955 HKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEP 1014
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R+ + + + L+ + YGK++LAK+
Sbjct: 1015 AQ-RKIIMHKIRPHITTLRKYTYGKHILAKL 1044
>sp|Q14671|PUM1_HUMAN Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3
Length = 1186
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 173/335 (51%), Gaps = 25/335 (7%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ P + +++ +E++ ++LM N++IQK
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 905
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ L + + +L + + G RV+QK L+ + +QQ+ +V
Sbjct: 906 FEFGSLEQKLALAERI---RGHVLSLALQMYGCRVIQKALEF--------IPSDQQNEMV 954
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQ--- 416
L + K +GNHV+++C++ P + +++ L+T GC ++Q
Sbjct: 955 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 1014
Query: 417 -YCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYF 475
+C+P +Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G
Sbjct: 1015 EHCLP----DQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVL 1070
Query: 476 ALSLGKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWD 530
LS K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q D
Sbjct: 1071 VLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMID 1130
Query: 531 VSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
V++ + R+ + + + L+ + YGK++LAK+
Sbjct: 1131 VAEPGQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 1164
>sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6
PE=1 SV=1
Length = 861
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 167/331 (50%), Gaps = 17/331 (5%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ ++ G I+ + D+ G RF+Q+K++ P + + E++ +LM N++IQK
Sbjct: 530 LSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKF 589
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
N Q +L ++ +++ + + G RV+QK LD E R +L +E ++
Sbjct: 590 FEYGNSTQRKELADQLMG---QIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQVM 646
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
+++ +GNHVI++C++ P D +L L+ GC ++Q +
Sbjct: 647 RCVRD--------QNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLL 698
Query: 420 PLAQEEQKARLIAD-VVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALS 478
+ + R I + ++ + VLS+ YGNYV Q++L + + +L+G LS
Sbjct: 699 ERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLS 758
Query: 479 LGKCSSNVVQKCLLESGEEQSTGIINEIIRHPE----IVQLILDPYGNYVIQTAWDVSQG 534
L K +SNV++KCL G + II EI E ++ ++ D YGNYV+Q ++
Sbjct: 759 LHKFASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTA 818
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ R TL+ V ++ L+ + YGK++++++
Sbjct: 819 DQ-RLTLFSRVRMHASALKKYTYGKHIVSRL 848
>sp|Q80U78|PUM1_MOUSE Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=2
Length = 1189
Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 173/335 (51%), Gaps = 23/335 (6%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ E+ G I+ ++D+ G RF+Q K++ + +++ +E++ ++LM N++IQK
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKF 906
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
+ EQ L + + +L + + G RV+QK L+ P+ QQ+ E +V
Sbjct: 907 FEFGSHEQKLALAERI---RGHVLSLALQMYGCRVIQKALEF--IPSDQQVINE----MV 957
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQ--- 416
L + K +GNHV+++C++ P + +++ L+T GC ++Q
Sbjct: 958 RELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRIL 1017
Query: 417 -YCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYF 475
+C+P +Q ++ ++ + L + YGNYV+Q++L P+ + +VA++ G
Sbjct: 1018 EHCLP----DQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVL 1073
Query: 476 ALSLGKCSSNVVQKCLLESGEEQSTGIINEIIR-----HPEIVQLILDPYGNYVIQTAWD 530
LS K +SNVV+KC+ + + +I+E+ H + ++ D Y NYV+Q D
Sbjct: 1074 VLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMID 1133
Query: 531 VSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
V++ + R+ + + + L+ + YGK++LAK+
Sbjct: 1134 VAEPGQ-RKIVMHKIRPHIATLRKYTYGKHILAKL 1167
>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2
Length = 1533
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 169/329 (51%), Gaps = 14/329 (4%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ +L I+ ++D+ G RF+Q+K++ + +M+ SE++ + LM N++IQK
Sbjct: 1109 LRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKF 1168
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
EQ L + V + +L++ + G RV+QK L++ ++ EQQ +V
Sbjct: 1169 FEFGTPEQKNTLGMQV---KGHVLQLALQMYGCRVIQKALES--------ISPEQQQEIV 1217
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + K +GNHV+++C++ P + ++ L+T GC ++Q +
Sbjct: 1218 HELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRIL 1277
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479
EQ ++ ++ + L + YGNYV+Q++L + + ++ + G+ LS
Sbjct: 1278 EHCTAEQTTPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQ 1337
Query: 480 GKCSSNVVQKCLLESGEEQSTGIINEIIRHPE--IVQLILDPYGNYVIQTAWDVSQGRRI 537
K +SNVV+KC+ + + TG+I+E+ + + ++ D Y NYV+Q DVS+ ++
Sbjct: 1338 HKFASNVVEKCVTHATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQL 1397
Query: 538 RQTLYDLVVDNSPFLQSHMYGKNVLAKVR 566
++ L + + L+ + YGK++ AK+
Sbjct: 1398 KK-LMTKIRPHMAALRKYTYGKHINAKLE 1425
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2
Length = 961
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 168/330 (50%), Gaps = 17/330 (5%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
+ ++ GR++ + D+ G RF+Q+K++ + + + SEV+ +LM N++IQK
Sbjct: 626 LSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKF 685
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
I Q +L+ + +++ + + G RV+QK L+ + +Q++ L+
Sbjct: 686 IEHGTPAQREELVKQLAG---QMVSLSLQMYGCRVIQKALEV--------IDVDQKTELI 734
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + + +GNHVI++C++ P ++ L+T GC ++Q +
Sbjct: 735 RELDGNVLKCVRDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRIL 794
Query: 420 PLAQEEQKARLIAD-VVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALS 478
++++ I D ++ +A+ L+ YGNYV Q++L P ++ +L G +S
Sbjct: 795 EHCSDDEETHCIIDEILESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMS 854
Query: 479 LGKCSSNVVQKCLLESGEEQSTGIINEIIRHPE----IVQLILDPYGNYVIQTAWDVSQG 534
K +SNVV+KCL + + +I EI+ E ++ ++ D + NYV+Q ++S+
Sbjct: 855 QHKYASNVVEKCLEHADSTEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKD 914
Query: 535 RRIRQTLYDLVVDNSPFLQSHMYGKNVLAK 564
++ R+ L + + L+ + YGK+++A+
Sbjct: 915 QQ-REILVQRMKIHLQSLRKYTYGKHIVAR 943
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 3/178 (1%)
Query: 388 PDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYG 447
P+ K L +IA ++ + D+ G +Q + +E+KA + ++V+ A L +G
Sbjct: 619 PNARKLELSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFG 678
Query: 448 NYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEII 507
NYV+Q + P ++V QLAG+ +LSL V+QK L +Q T +I E+
Sbjct: 679 NYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIRELD 738
Query: 508 RHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ +++ + D GN+VIQ + RI + L +H YG V+ ++
Sbjct: 739 GN--VLKCVRDQNGNHVIQKCIESMPAGRIGFVIAAF-RGQVATLSTHPYGCRVIQRI 793
>sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1
Length = 972
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 173/338 (51%), Gaps = 17/338 (5%)
Query: 233 HRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSA 292
++T + E+ G ++ + D+ G RF+Q+K++ + M+ E++ LM
Sbjct: 625 NKTRGFELAEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFG 684
Query: 293 NHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQ 352
N++IQK Q +L + + +L + + G RV+QK ++ +
Sbjct: 685 NYVIQKFFEHGLPPQRRELADKLFDN---VLPLSLQMYGCRVIQKAIEV--------VDL 733
Query: 353 EQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGC 412
+Q+ +V L + + +GNHV+++C++ P + + ++ N + L+T GC
Sbjct: 734 DQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGC 793
Query: 413 CLLQYCIPLAQE-EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLA 471
++Q + + + +++++ ++++ +L++ YGNYV+Q++L P ++ +LA
Sbjct: 794 RVIQRVLEHCHDPDTQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELA 853
Query: 472 GRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEII----RHPEIVQLILDPYGNYVIQT 527
G+ +S K +SNVV+KCL G E+ ++NE++ + + ++ D + NYV+Q
Sbjct: 854 GKIVQMSQQKFASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQK 913
Query: 528 AWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ ++ R+ + + + L+ + YGK+++A+V
Sbjct: 914 VLETCDDQQ-RELILGRIKVHLNALKKYTYGKHIVARV 950
>sp|Q9ZW02|PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1
Length = 964
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 175/338 (51%), Gaps = 17/338 (5%)
Query: 233 HRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSA 292
++T + E+ G ++ + D+ G RF+Q+K++ + M+ E++ LM
Sbjct: 617 NKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFG 676
Query: 293 NHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQ 352
N++IQK Q +L ++ + +L + + G RV+QK ++ + + Q+ +
Sbjct: 677 NYVIQKFFEHGLPPQRRELGEKLIDN---VLPLSLQMYGCRVIQKAIEVVDLDQKIQMVK 733
Query: 353 EQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGC 412
E ++ +++ +GNHV+++C++ P + + ++ + + L+T GC
Sbjct: 734 ELDGHVMRCVRD--------QNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGC 785
Query: 413 CLLQYCIPLAQE-EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLA 471
++Q + + +++++ ++++ +L++ YGNYVVQ++L P ++ +LA
Sbjct: 786 RVIQRVLEHCHNPDTQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELA 845
Query: 472 GRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEII----RHPEIVQLILDPYGNYVIQT 527
G+ +S K +SNVV+KCL G E+ ++NE++ + + ++ D + NYV+Q
Sbjct: 846 GKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQK 905
Query: 528 AWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ ++ R+ + + + L+ + YGK+++A+V
Sbjct: 906 VLETCDDQQ-RELILTRIKVHLNALKKYTYGKHIVARV 942
>sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1
Length = 968
Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 172/338 (50%), Gaps = 17/338 (5%)
Query: 233 HRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSA 292
++T + E+ G ++ + D+ G RF+Q+K++ + M+ E++ LM
Sbjct: 621 NKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFG 680
Query: 293 NHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQ 352
N++IQK Q +L + +L + + G RV+QK ++ +
Sbjct: 681 NYVIQKFFEHGLPPQRRELAEKLFD---HVLPLSLQMYGCRVIQKAIEV--------VDL 729
Query: 353 EQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGC 412
+Q+ +V L + + +GNHV+++C++ P + + ++ + + L+T GC
Sbjct: 730 DQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGC 789
Query: 413 CLLQYCIPLAQE-EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLA 471
++Q + + + +++++ ++++ +L++ YGNYVVQ++L P ++ +LA
Sbjct: 790 RVIQRVLEHCHDPDTQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELA 849
Query: 472 GRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEII----RHPEIVQLILDPYGNYVIQT 527
G+ +S K +SNVV+KCL G E+ ++NE++ + + ++ D + NYV+Q
Sbjct: 850 GKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQK 909
Query: 528 AWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
+ ++ R+ + + + L+ + YGK+V+A++
Sbjct: 910 VLETCDDQQ-RELILTRIKVHLTALKKYTYGKHVVARI 946
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 73/154 (47%), Gaps = 11/154 (7%)
Query: 231 HHHRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQ 290
H T +EE+ + ++A+D+ G +Q ++ P + +I+ E+ + ++ + +
Sbjct: 800 HDPDTQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQK 859
Query: 291 SANHLIQKLI---GVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTR 347
A+++++K + G E + +L + L + D + V+QK+L+
Sbjct: 860 FASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLET------ 913
Query: 348 QQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKR 381
+Q+ L+++ +K +L K +G HV+ R
Sbjct: 914 --CDDQQRELILTRIKVHLTALKKYTYGKHVVAR 945
>sp|P39016|MPT5_YEAST Suppressor protein MPT5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MPT5 PE=1 SV=2
Length = 859
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 160/318 (50%), Gaps = 39/318 (12%)
Query: 248 ILVAKDEQGCRFLQKKVD---ERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLN 304
I +A D+ GCRFLQKK++ E N + +++ ++ +L+ N+L+QKL L
Sbjct: 216 IKLATDQFGCRFLQKKLETPSESNMVR-DLMYEQIKPFFLDLILDPFGNYLVQKLCDYLT 274
Query: 305 EEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKN 364
EQ T LI ++ + + +I + G+R +QK++D + + L + S ++++
Sbjct: 275 AEQKTLLIQTIYPN---VFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQ 331
Query: 365 ITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAE--NCLDLATDRSGCCLLQYCIPLA 422
+ V+L +GNHVI++C+ KF P +++ I E N + ++T + GCC+LQ + +
Sbjct: 332 V-VTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVC 390
Query: 423 QEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQ--VTADVVAQLAGRYFALSLG 480
+Q ++ +V L +GNY++Q++L +K + A++ +L+ LS
Sbjct: 391 TLQQIFKISVKIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAELFNRLSNELCQLSCL 450
Query: 481 KCSSNVVQKCLLE-------------SGEEQSTGI---------INEIIRHPEIVQ---- 514
K SSNVV+K + + G Q T + +N ++ +I
Sbjct: 451 KFSSNVVEKFIKKLFRIITGFIVNNNGGASQRTAVASDDVINASMNILLTTIDIFTVNLN 510
Query: 515 -LILDPYGNYVIQTAWDV 531
LI D +GNY +QT DV
Sbjct: 511 VLIRDNFGNYALQTLLDV 528
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 91/220 (41%), Gaps = 17/220 (7%)
Query: 323 LRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRC 382
+++ D G R +QK L E P+ + ++ L+ +K + L P GN+++++
Sbjct: 216 IKLATDQFGCRFLQKKL---ETPSESNMVRD---LMYEQIKPFFLDLILDPFGNYLVQKL 269
Query: 383 LQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLS 442
+ L++ I N ++ ++ G LQ I E + LI + +
Sbjct: 270 CDYLTAEQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSI 329
Query: 443 EHSY-------GNYVVQYILGLKIPQVTADVVAQLA--GRYFALSLGKCSSNVVQKCLLE 493
E GN+V+Q + P ++ + +S K V+QK L
Sbjct: 330 EQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSV 389
Query: 494 SGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQ 533
+Q I +I++ + LI D +GNY+IQ D+ +
Sbjct: 390 CTLQQIFKISVKIVQF--LPGLINDQFGNYIIQFLLDIKE 427
>sp|Q07807|PUF3_YEAST mRNA-binding protein PUF3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF3 PE=1 SV=1
Length = 879
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 149/313 (47%), Gaps = 28/313 (8%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
++++ G + KD+ G RF+Q+++ + E+I +E+ DD EL N++IQK
Sbjct: 536 LKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKF 595
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
++ Q L+ + ++L + RV+QK L EY + Q+ LV
Sbjct: 596 FEFGSKIQKNTLVDQFKGNMKQL---SLQMYACRVIQKAL---EY-----IDSNQRIELV 644
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCI 419
L + + + K +GNHVI++ ++ P + +L + + L+T GC ++Q +
Sbjct: 645 LELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLL 704
Query: 420 PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYIL------GLKIPQVTADVVAQLAGR 473
E + ++ ++ L + YGNYV+QY+L ++ + +++ +A
Sbjct: 705 EFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANN 764
Query: 474 YFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPE-----------IVQLILDPYGN 522
S K +SNVV+K +L + Q II++I+ + ++ +I D + N
Sbjct: 765 VVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFAN 824
Query: 523 YVIQTAWDVSQGR 535
YVIQ +VS+G
Sbjct: 825 YVIQKLVNVSEGE 837
>sp|O94462|PUF3_SCHPO mRNA-binding protein puf3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=puf3 PE=2 SV=4
Length = 732
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 160/341 (46%), Gaps = 19/341 (5%)
Query: 231 HHHRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVID-DLHELMRH 289
H ++ + + ++ G ++L + D+ G RF+Q+K+ + E + E+ +LM
Sbjct: 385 HANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMD 444
Query: 290 QSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQ 349
N+++QK NE+Q +++LS + + + + + G RV+QK A EY
Sbjct: 445 IFGNYVVQKYFEFGNEKQ-KQILLSQI--KGHVFSLSLQMYGCRVVQK---AIEY----- 493
Query: 350 LTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDR 409
++ E Q L+ L + +GNHVI++ ++ + + +L + L+
Sbjct: 494 ISPEHQVQLIQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHP 553
Query: 410 SGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQ 469
GC ++Q I E+K +I +++ + L++ YGNYVVQ+IL +
Sbjct: 554 YGCRVIQRAIEHCHSERKL-IIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDL 612
Query: 470 LAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHP----EIVQLIL-DPYGNYV 524
+ LS K +SNVV++C+ + I+N+II I+ L++ D Y NYV
Sbjct: 613 MIDHLLFLSCHKFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYV 672
Query: 525 IQTAWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKV 565
IQ D S R L + + L+ YGK+++ V
Sbjct: 673 IQKLLDASPEEE-RDLLISYIYPHISVLKKFTYGKHLIMSV 712
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 114/246 (46%), Gaps = 31/246 (12%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKL 299
I+EL G ++ D+ G +QK ++ + ++ IL + +H L H +IQ+
Sbjct: 503 IQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRA 562
Query: 300 IGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLV 359
I + E+ KLI+ + +L++ D G+ V+Q +L G ++ + +
Sbjct: 563 IEHCHSER--KLIIEEL--LPHILKLTQDQYGNYVVQHILRTG--------SESDKKYIF 610
Query: 360 SALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKD---------LLEEIAENC---LDLAT 407
+ + + LS ++V++RC+ Y D ++ E AENC + +
Sbjct: 611 DLMIDHLLFLSCHKFASNVVERCI-----SYISDVDRRRILNKIISEKAENCSILMLMMK 665
Query: 408 DRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVV 467
D+ ++Q + + EE++ LI+ + + VL + +YG +++ + + ++A V
Sbjct: 666 DKYANYVIQKLLDASPEEERDLLISYIYPHISVLKKFTYGKHLIMSVERFRQKSISA--V 723
Query: 468 AQLAGR 473
+LA +
Sbjct: 724 PKLASK 729
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 227 RARHHHHRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHEL 286
RA H H IEEL I+ + +D+ G +Q + + D + I +ID L L
Sbjct: 561 RAIEHCHSERKLIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFL 620
Query: 287 MRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQR----LLRICDDLSGSRVMQKLLDAG 342
H+ A++++++ I +++ +++ ++S + L+ + D + V+QKLLDA
Sbjct: 621 SCHKFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDAS 680
Query: 343 EYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVI 379
+E++ LL+S + L K +G H+I
Sbjct: 681 P--------EEERDLLISYIYPHISVLKKFTYGKHLI 709
>sp|Q09312|FBF2_CAEEL Fem-3 mRNA-binding factor 2 OS=Caenorhabditis elegans GN=fbf-2 PE=1
SV=1
Length = 632
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 176/405 (43%), Gaps = 67/405 (16%)
Query: 206 SDHHHLGSSTNASSRYNNFYARARHHHHRTSYSSIEELRGRIIL-----------VAKDE 254
S H+HL S A SR + + R+ + S S E+R R+ L A D+
Sbjct: 142 SKHYHLKYSRPALSRNSRSFTRSNNVLPTWSLDSNGEMRSRLSLSEVLDSGDLMKFAVDK 201
Query: 255 QGCRFLQKKVD-ERNPIDIEMILSEVI---DDLHELMRHQSANHLIQKLIGV---LNEEQ 307
GC+FL+K V + +VI DD +L + N+L+Q +IG+ N++
Sbjct: 202 TGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDG 261
Query: 308 MTKL---ILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKN 364
TK + + +SSQ + +C D RV+Q L Q + LV AL
Sbjct: 262 YTKRQEKLKNFISSQ--MTDMCLDKFACRVIQSSL--------QNMDLSLACKLVQALPR 311
Query: 365 IT--VSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIA--ENCLDLATDRSGCCLLQYCI- 419
+++ + NHVI++ + P + +++ +A E+ + +D+ GC ++Q I
Sbjct: 312 DARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIE 371
Query: 420 ------------PLAQ---EEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTA 464
AQ E RL+ V L+ + Y NY++Q+I+ V
Sbjct: 372 KLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYR 431
Query: 465 DVVAQ--LAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEI----IRHPEIVQLILD 518
+ + + L +LS K +S+VV+K L + E +++EI I HP+ + LD
Sbjct: 432 ECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTGKDALD 491
Query: 519 -----PYGNYVIQT----AWDVSQGRR-IRQTLYDLVVDNSPFLQ 553
+GNYV+Q D GRR ++ YD + +L+
Sbjct: 492 IMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLK 536
>sp|Q9XI17|PUM20_ARATH Putative pumilio homolog 20 OS=Arabidopsis thaliana GN=APUM20 PE=5
SV=2
Length = 332
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 132/281 (46%), Gaps = 23/281 (8%)
Query: 287 MRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPT 346
MR Q A + ++I L++ ++ + + S L I +++GS+ +QKLL
Sbjct: 61 MRLQIAMDV--QMISKLDQRKLQTMASLLTSDPDYFLMIARNMNGSKRIQKLLGK----- 113
Query: 347 RQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLA 406
T + +L +A+ + + + ++V++R + F K + E I +A
Sbjct: 114 ----TDDVDALFAAAILRRFLHIITDKYASYVVRRGMTVFDKKKKKAMYEHILHYASHIA 169
Query: 407 TDRSGCCLLQYCIPLAQEEQKARLIADVVAN-AYVLSEHSYGNYVVQYILGLKIPQVTAD 465
D+ G L I A + + DV+A+ A VLS +YGN+V+Q +L L + +
Sbjct: 170 RDKHGNLALNDIITDAYRNK----LFDVIAHKALVLSNDAYGNFVIQRVLKLNDLRSKNN 225
Query: 466 VVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEII--RHPEIVQLILDPYGNY 523
+V L G + LS K S VV LLE+ E ++ E++ +++L + YGN+
Sbjct: 226 IVVSLRGHFVDLSFQKYGSYVVD-VLLETKESMVV-VVEELMECEGDMLMRLARNEYGNF 283
Query: 524 VIQTAWDVSQGRRIRQTLY-DLVVDNSPF--LQSHMYGKNV 561
++ A V+Q +R L+ LV PF L GKN+
Sbjct: 284 LVCKALRVTQKEMVRTDLFWGLVHKLKPFHNLLRWSRGKNI 324
>sp|Q9FIE9|PUM16_ARATH Putative pumilio homolog 16 OS=Arabidopsis thaliana GN=APUM16 PE=3
SV=2
Length = 332
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 125/267 (46%), Gaps = 13/267 (4%)
Query: 282 DLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDA 341
D+ + + + ++ I VL+ + + + S + I + +GS+ +QKL+
Sbjct: 47 DIQRIFNFMTGSEDLKDDISVLDTGTLMWMASLMTSDCDYFMVITTNKNGSKTLQKLM-- 104
Query: 342 GEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAEN 401
++ + A+ + + + + ++V + ++ F D + + ++I
Sbjct: 105 -------GMSDDMDVFFFEAIMRLFIHVMTDKYASYVTIQGMRVFQQDKRELMYDQILRY 157
Query: 402 CLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVAN-AYVLSEHSYGNYVVQYILGLKIP 460
LA D+ GC L I + + D+VAN A +LS +YGN+VVQ++L L+
Sbjct: 158 ACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAYGNFVVQHVLKLRDS 217
Query: 461 QVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEII--RHPEIVQLILD 518
+ T ++ +L G LS K S +V++ LLE+G+ ++ +++ + +++L
Sbjct: 218 RCTRNIADKLCGYCVELSFKKYGSYIVER-LLEAGDVPMATVVLDLLACKTEMLIRLARS 276
Query: 519 PYGNYVIQTAWDVSQGRRIRQTLYDLV 545
YGN+V+ A +++ Y LV
Sbjct: 277 EYGNFVVCKALELTNEILTADLFYGLV 303
>sp|Q9LSS8|PUM19_ARATH Putative pumilio homolog 19 OS=Arabidopsis thaliana GN=APUM19 PE=3
SV=2
Length = 327
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 118/271 (43%), Gaps = 11/271 (4%)
Query: 283 LHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAG 342
L LM +++I ++ ++ ++ + S + I GSR +QKLL
Sbjct: 45 LFNLMTDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKS 104
Query: 343 EYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENC 402
+ + + +A+ + ++ + ++V R + F K L E I +
Sbjct: 105 D---------DVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHA 155
Query: 403 LDLATDRSGCCLLQYCIPLAQE-EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQ 461
LDLA D+ GC L I A + + +L+ VV+NA LS + GN+VVQ++L L +
Sbjct: 156 LDLACDQHGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSR 215
Query: 462 VTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYG 521
++ L G+ LS K S +V+K L + +++L + +G
Sbjct: 216 CIHNIAVNLYGQCIELSFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNEFG 275
Query: 522 NYVIQTAWDVSQGRRIRQTLYDLVVDNSPFL 552
N+V+ A ++ R+ + LV PF+
Sbjct: 276 NFVVVKALRFTKEMRM-DLFWGLVQKLMPFI 305
>sp|Q9LXC5|PUM21_ARATH Putative pumilio homolog 21 OS=Arabidopsis thaliana GN=APUM21 PE=3
SV=1
Length = 517
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 119/276 (43%), Gaps = 17/276 (6%)
Query: 305 EEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKN 364
E + K+ ++ ++++ L + + GS+ ++ L + + LL A+
Sbjct: 246 ESHLFKIGSALTTTKRIFLHLATNQYGSQALRILF---------RRSPSLDHLLFCAVDT 296
Query: 365 ITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQE 424
L +G +I ++ + L + E L LA +GC L + +
Sbjct: 297 NFFLLMSDKYGRGLIIPAIRAVDKTKKESLYKLTYEYTLHLARLETGCLALNNVLQEIRG 356
Query: 425 EQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSS 484
+ + V NA LS YG +VVQ IL L+ P T + +L G +F L++ + S
Sbjct: 357 IYRDLIFECVANNADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFRLAMERQGS 416
Query: 485 NVVQKCLLESGEEQSTGIINEIIRHP-EIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYD 543
VV+KCL + ++ E + E V++ D +GN+V+Q+A V + + +R L +
Sbjct: 417 YVVEKCL--KSDFARDQVLEEFRGNAKEWVRMTTDKFGNFVVQSALRVMKEKEMRPLLRE 474
Query: 544 LVVDNSPFLQSHMYGKNVLAKVRGNKNRFHNRVAMW 579
V L+ H +GK + + R + W
Sbjct: 475 FVEK----LRPH-FGKMEIGRGRNTLRVIQEEIVGW 505
>sp|Q9C8B8|PUM17_ARATH Putative pumilio homolog 17 OS=Arabidopsis thaliana GN=APUM17 PE=5
SV=2
Length = 332
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 123/273 (45%), Gaps = 13/273 (4%)
Query: 282 DLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDA 341
DL + + + ++ I VL+ + + + S + I + +GS+ +QKL+
Sbjct: 47 DLQRMFNFMTGSEDLKDDISVLDTGMLMWMASFLTSDSDYFMVITRNKNGSKSLQKLM-- 104
Query: 342 GEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAEN 401
+++ + A+ + + + + ++V + ++ F D + + + I
Sbjct: 105 -------RMSDDMDVFFFVAIMRLFIHVMIDKYASYVAIQGMRIFKQDKRELMYDHILRY 157
Query: 402 CLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVAN-AYVLSEHSYGNYVVQYILGLKIP 460
L LA D+ GC L I + + D+V+N A +LS +YGN+VVQ++L L
Sbjct: 158 ALFLARDQYGCIALNEIIKELDDPYYRDELMDIVSNNALLLSNDAYGNFVVQHVLKLHDS 217
Query: 461 QVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEII--RHPEIVQLILD 518
+ T ++ +L G LS K S +V++ LLE + I+ +++ + +++L
Sbjct: 218 RCTGNIADKLCGYCVELSFKKYGSYIVER-LLEVRDIPMATIVLDLLACKTEMLIRLARS 276
Query: 519 PYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPF 551
GN+V+ +++ Y LV P+
Sbjct: 277 ENGNFVVCKLLELTNDILTADLFYSLVNKLRPY 309
>sp|Q9N5M6|FBF1_CAEEL Fem-3 mRNA-binding factor 1 OS=Caenorhabditis elegans GN=fbf-1 PE=1
SV=1
Length = 614
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 100/396 (25%), Positives = 167/396 (42%), Gaps = 69/396 (17%)
Query: 206 SDHHHLGSSTNASSRYNNFYARARHHHHRTSYSSIEELRGRIIL-----------VAKDE 254
S + HL S A SR + + R+ + S S E+R R+ L A D+
Sbjct: 140 SKNDHLKYSRPALSRNSRSFTRSNNVLPTWSLDSNGEMRSRLSLSEVLDSGDLMKFAVDK 199
Query: 255 QGCRFLQKKVD-ERNPIDIEMILSEVI---DDLHELMRHQSANHLIQKLIGVL------- 303
GC+FL+K V + +VI DD +L + N+ +Q++IG+
Sbjct: 200 TGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYFVQEIIGMSLTTYDDD 259
Query: 304 NEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALK 363
N ++ KL + +SSQ + +C D RV+Q L Q + LV AL
Sbjct: 260 NIKRQEKL-KNFISSQ--MTDMCLDKFACRVIQSSL--------QNMDLSLACKLVQALP 308
Query: 364 NIT--VSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIA--ENCLDLATDRSGCCLLQYCI 419
+++ + NHVI++ + P + +++ +A E+ + D+ GC ++Q I
Sbjct: 309 RDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKYGCRVVQTII 368
Query: 420 -------------PLAQ---EEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVT 463
AQ E RL+ V L+ + Y NY++Q+I+ V
Sbjct: 369 EKLTADSINVDLTSAAQHLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVY 428
Query: 464 ADVVAQ--LAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIR----HPEIVQLIL 517
+ + + L +LS K +S+VV+K L + E +++EI HP + L
Sbjct: 429 RECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPMELLAEMMDEIFDGYMPHPGTGKDAL 488
Query: 518 D-----PYGNYVIQT----AWDVSQGRR-IRQTLYD 543
D +GNYV+Q D GRR ++ YD
Sbjct: 489 DIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGSYD 524
>sp|O60059|YG58_SCHPO Pumilio domain-containing protein C56F2.08c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC56F2.08c PE=1
SV=1
Length = 661
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 109/224 (48%), Gaps = 27/224 (12%)
Query: 240 IEELRGRIILVAKDEQGCRFLQKKVDE--RNPIDIEMILSEVIDDLHELMRHQSANHLIQ 297
+E LR R +K R ++K +D +IE+I ++DD+ EL N ++Q
Sbjct: 155 VETLRSRQFEASK----LREIRKNIDSGFYTQEEIEVIARSMLDDVAELSSDYLGNTVVQ 210
Query: 298 KLIGVLNE---EQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQ 354
K ++ E M + I +++ I +G+ QK++D T++Q
Sbjct: 211 KFFEYCSDPIKEAMLERIAPYLAA------IGIHKNGTWAAQKIIDVAS-------TEKQ 257
Query: 355 QSLLVSALKNITVSLSKSPHGNHVIKRCLQ-KFPPDYTKDLLEEIAENCLDLATDRSGCC 413
L+V L+ T L GN+V + CL+ K+P + L E +A +C ++ R G
Sbjct: 258 MDLIVKHLRPYTALLYFDQFGNYVAQCCLRFKYPKN--TFLFEVMARHCCEIGQSRFGAR 315
Query: 414 LLQYCI--PLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYIL 455
++ C+ A EQ+A ++A ++ N+++L+ +S G ++ ++L
Sbjct: 316 AIRACLENENATFEQQALVVASIIINSHLLATNSNGMLLLTWLL 359
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 4/124 (3%)
Query: 390 YTKDLLEEIAENCLD----LATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHS 445
YT++ +E IA + LD L++D G ++Q + K ++ + + H
Sbjct: 180 YTQEEIEVIARSMLDDVAELSSDYLGNTVVQKFFEYCSDPIKEAMLERIAPYLAAIGIHK 239
Query: 446 YGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINE 505
G + Q I+ + + D++ + Y AL N V +C L ++T +
Sbjct: 240 NGTWAAQKIIDVASTEKQMDLIVKHLRPYTALLYFDQFGNYVAQCCLRFKYPKNTFLFEV 299
Query: 506 IIRH 509
+ RH
Sbjct: 300 MARH 303
>sp|O74438|MCP2_SCHPO Meiotic coiled-coil protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mcp2 PE=4 SV=1
Length = 703
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 140/293 (47%), Gaps = 29/293 (9%)
Query: 248 ILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQ 307
I+V+ D+Q FLQ+K+ + + I+ +I +H LM ++ N L+Q+ Q
Sbjct: 367 IIVSNDQQSSIFLQQKLKISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQRCFEHGTAPQ 426
Query: 308 MTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITV 367
+ ++ +++ + +L++ D G V+QK +D +T++ + ++ L +T+
Sbjct: 427 IRQMGSAMLGN---MLKLATDPFGCHVVQKAID--------NVTEDIKLAMMDELF-LTI 474
Query: 368 SLSKSPH-GNHVIKRCLQKFPPDYTKDLLEEIAENCL-----DLATDRSGCCLLQYCIPL 421
++ H HV ++ + +Y +++ + N L ++A +G ++Q
Sbjct: 475 DVTIMHHYACHVWQKLFETQWYEYPVNVMNRV-NNALRGKWHEVAVGENGSLVVQNMFEN 533
Query: 422 AQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGK 481
E+ K I +++ + ++ +GN+VVQ+++ + V+ L R S+ +
Sbjct: 534 CVEKDKRECIEEIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQ 593
Query: 482 CSSNVVQKCLLESGE--------EQSTGIINEIIRHPEIVQLILDPYGNYVIQ 526
+S V++K ++SG +Q T + R P ++ + D YGNY+IQ
Sbjct: 594 FASKVIEKA-IKSGPKNFISLYLKQITNARVDRTRQP-LIDIASDQYGNYLIQ 644
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 6/175 (3%)
Query: 375 GNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADV 434
GN +++RC + + + + N L LATD GC ++Q I E+ K ++ ++
Sbjct: 411 GNFLVQRCFEHGTAPQIRQMGSAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDEL 470
Query: 435 VANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQ----LAGRYFALSLGKCSSNVVQKC 490
V H Y +V Q + + + +V+ + L G++ +++G+ S VVQ
Sbjct: 471 FLTIDVTIMHHYACHVWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNM 530
Query: 491 LLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLV 545
E+ I EII H + + +GN+V+Q + QG +++ + L+
Sbjct: 531 FENCVEKDKRECIEEIIFHLD--GIARGQWGNWVVQHMVENGQGEDLKRVIDALL 583
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/277 (19%), Positives = 118/277 (42%), Gaps = 29/277 (10%)
Query: 243 LRGRIILVAKDEQGCRFLQKKVDERNPIDIEM-ILSEVIDDLHELMRHQSANHLIQKLIG 301
+ G ++ +A D GC +QK +D DI++ ++ E+ + + H A H+ QKL
Sbjct: 434 MLGNMLKLATDPFGCHVVQKAIDNVTE-DIKLAMMDELFLTIDVTIMHHYACHVWQKLF- 491
Query: 302 VLNEEQMTKLILSVVSSQQRLLR-----ICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQS 356
E Q + ++V++ LR + +GS V+Q + + +++ +E
Sbjct: 492 ---ETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEE--- 545
Query: 357 LLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQ 416
++ L I ++ GN V++ ++ + K +++ + ++ + D+ +++
Sbjct: 546 -IIFHLDGI----ARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIE 600
Query: 417 YCIPLAQEEQKARLIADVVANAYV---------LSEHSYGNYVVQYILGLKIPQVTADVV 467
I + + L + NA V ++ YGNY++Q I+ L P V+
Sbjct: 601 KAIK-SGPKNFISLYLKQITNARVDRTRQPLIDIASDQYGNYLIQQIIQLGQPAEKNLVI 659
Query: 468 AQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIIN 504
+ +L K V + ++Q + +IN
Sbjct: 660 THIKKHMVSLRGSKYGQKVAYLVEKWNSQKQVSSVIN 696
>sp|P47135|JSN1_YEAST Protein JSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=JSN1 PE=1 SV=1
Length = 1091
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 118/271 (43%), Gaps = 25/271 (9%)
Query: 241 EELRGRIILVAKDEQGCRFLQKKVDER--NPIDIEMILSEVIDDLHELMRHQSANHLIQK 298
E L GR D R L+K +D + ++IE + ++D+L EL N ++QK
Sbjct: 582 EPLSGREF----DPPKLRELRKSIDSNAFSDLEIEQLAIAMLDELPELSSDYLGNTIVQK 637
Query: 299 LIGVLNEEQMTKLILSVV--SSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQS 356
L E + +I ++ + + L + +G+ QK++ P +Q+ Q Q
Sbjct: 638 LF-----EHSSDIIKDIMLRKTSKYLTSMGVHKNGTWACQKMITMAHTP--RQIMQVTQ- 689
Query: 357 LLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQ 416
+K+ L GN+VI+ C+ KF + + + E I N + +R G ++
Sbjct: 690 ----GVKDYCTPLINDQFGNYVIQ-CVLKFGFPWNQFIFESIIANFWVIVQNRYGARAVR 744
Query: 417 YCIP---LAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKI-PQVTADVVAQLAG 472
C+ + EQ L A +V A LS +S G +V + L + P + + +L
Sbjct: 745 ACLEAHDIVTPEQSIVLSAMIVTYAEYLSTNSNGALLVTWFLDTSVLPNRHSILAPRLTK 804
Query: 473 RYFALSLGKCSSNVVQKCLLESGEEQSTGII 503
R L + +S + K L G++ + II
Sbjct: 805 RIVELCGHRLASLTILKVLNYRGDDNARKII 835
>sp|Q9P789|YN8E_SCHPO Pumilio domain-containing protein P35G2.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP35G2.14 PE=1 SV=2
Length = 1065
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 114/275 (41%), Gaps = 38/275 (13%)
Query: 240 IEELRGRIILVAKDEQGCRFLQ----------KKVDERNPI--DIEMI--LSEVIDDLHE 285
+EEL G+ I D F + VD N ++ + L EV DDL
Sbjct: 644 LEELNGKRIFFGSDPVCISFAKVASSSSESSHSAVDGLNKAFSNVSFVPSLREVYDDLIN 703
Query: 286 LMRHQSANHLIQKLIGVLNEE-QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEY 344
+++ L K+ +LN ++T + S + + R ++K +D G
Sbjct: 704 VVQSFGFKDL-SKIYQILNAACELTDFAAQIPSISKAFSSRRLNAPKLRQVRKRIDNG-- 760
Query: 345 PTRQQLTQEQ-QSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKD-----LLEEI 398
TQE+ + + ++ L ++ LS GN V+++ DY D +LE I
Sbjct: 761 ----LCTQEEVEDIAINWLDEVS-DLSSDHLGNTVVQKLF-----DYCSDPVKEMMLERI 810
Query: 399 AENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYV--LSEHSYGNYVVQYILG 456
A + + ++G Q + +A E + RLIA + Y+ L +GNYVVQ L
Sbjct: 811 APHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIAKHL-QPYIPLLFADQFGNYVVQTCLK 869
Query: 457 LKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCL 491
P + V + +++ ++ + S V+ CL
Sbjct: 870 FGAP-MNDFVFEAILNQFWVIAQSRYGSRAVRACL 903
>sp|Q10238|MPF1_SCHPO Meiotic PUF family protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mpf1 PE=4 SV=1
Length = 581
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/353 (21%), Positives = 148/353 (41%), Gaps = 42/353 (11%)
Query: 238 SSIEELRGRI--ILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHL 295
++I + + I I+ D+ LQ+++ + D +++ ++ LM+++ N L
Sbjct: 249 ATISKWKAMIEQIIFQNDQAASLSLQQQLKNEDIEDNINLINTILPFSVTLMKNKFGNFL 308
Query: 296 IQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTR--QQLTQE 353
IQK E Q+ + ++ + + D GS V+QK L+ YP R L +E
Sbjct: 309 IQKCFEYSTEAQLQSFSYFL---KKHVKELSIDAFGSHVLQKSLEI--YPERFTNNLIEE 363
Query: 354 QQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAE--------NCLDL 405
L + L H HV QKF K L++ I + L +
Sbjct: 364 LIECLPATL--------MQRHSCHV----WQKFFETRRKSLVDGIFDHFNKKMQGKWLQV 411
Query: 406 ATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTAD 465
+ G ++Q +E+ K + +++ N + +GN+V+Q+I+
Sbjct: 412 SVSEMGSLVVQTIFENCKEKDKRTCLDEIINNMDQIICGQWGNWVIQHIIEHGSEPDKQR 471
Query: 466 VVAQLAGRYFALSLGKCSSNVVQKCL-------LESGEEQSTGIINEIIRHPEIV--QLI 516
++ L + S + +S VV++ L + ++ T NE+ P I ++
Sbjct: 472 ILNSLLKEVESYSTNRYASKVVERALRVCHVTFFDRYVKEITTPQNEL---PTIFLQEIA 528
Query: 517 LDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKVRGNK 569
+ YGNY++Q V+ +I + + + + L+ H YG+ + A V +K
Sbjct: 529 SNQYGNYIVQYLLQVATPSQIN-LMAEHLKKHMVSLRGHKYGQRIAALVEKSK 580
>sp|Q6FUX0|NOP9_CANGA Nucleolar protein 9 OS=Candida glabrata (strain ATCC 2001 / CBS 138
/ JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NOP9 PE=3 SV=1
Length = 665
Score = 37.7 bits (86), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 58/294 (19%), Positives = 130/294 (44%), Gaps = 60/294 (20%)
Query: 292 ANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICD-DLSGSRVMQKLLDAGEYPTRQQL 350
+H ++ +I + + +L + Q ++R+ D +G+ V+Q LL +
Sbjct: 347 GSHFLENVISFAKTKYVERLYRVYIKDQ--IVRLAKRDTTGAFVIQSLL-------KNMK 397
Query: 351 TQEQQSLLVSALKNITVSL-SKSPHGNHVIKRC---------------LQKFPPDYTKDL 394
+E + +L + L ++++ L S G +I C ++K+ PD + +
Sbjct: 398 DKEVKEILDALLPDLSILLNSNMDFGTTIINACIKQNNYKRDEVIGQLMKKYYPDGSSE- 456
Query: 395 LEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYI 454
+ I E+CL LA+ G + P A+E +++ + +++ + + ++ +
Sbjct: 457 -KNILESCLLLASSTLGNTKDDW--PTAEERRRSIFLEELID-----FDDKFLEVAIESM 508
Query: 455 LGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGII------NEIIR 508
L L P+ R + S+VV+ L + Q II N +I+
Sbjct: 509 LNL--PE----------ERLLQMCYHGVFSHVVEHVL----QVQRVDIIKRKLLLNILIK 552
Query: 509 HPEIVQLILDPYGNYVIQTAWDVSQGRRI-RQTLYDLVVDNSPFLQSHMYGKNV 561
+IV+L + YG++++ WD + + ++ + +V+NS +++ +YG+ V
Sbjct: 553 --DIVKLACNAYGSHIVDKLWDFTAKLTLYKERIAAALVENSEMVKNSVYGRQV 604
>sp|Q12221|PUF2_YEAST mRNA-binding protein PUF2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF2 PE=1 SV=1
Length = 1075
Score = 37.4 bits (85), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 102/242 (42%), Gaps = 24/242 (9%)
Query: 229 RHHHHRTSYSSIEELRGRIILV------AKDEQGCRFLQKKVDERNPIDIEMILSEVIDD 282
R S S+IE + I+++ + D G +QK + + I +++L +
Sbjct: 557 RKQFDSNSLSTIEMEQLAIVMLDQLPELSSDYLGNTVIQKLFENSSNIIRDIMLRKCNKY 616
Query: 283 LHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAG 342
L + H++ + QK+I + N + L+ S VS + +D G+ V+Q +L G
Sbjct: 617 LTSMGVHKNGTWVCQKIIKMANTPRQINLVTSGVS--DYCTPLFNDQFGNYVIQGILKFG 674
Query: 343 EYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENC 402
+P + + S + ++N +G+ ++ CL+ T+ L I
Sbjct: 675 -FPWNSFIFESVLSHFWTIVQN--------RYGSRAVRACLEA-DSIITQCQLLTITSLI 724
Query: 403 LD----LATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYV--LSEHSYGNYVVQYILG 456
+ LATD +G L+ + + K ++ D + N + L H G+ V IL
Sbjct: 725 IVLSPYLATDTNGTLLITWLLDTCTLPNKNLILCDKLVNKNLVKLCCHKLGSLTVLKILN 784
Query: 457 LK 458
L+
Sbjct: 785 LR 786
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 2/124 (1%)
Query: 369 LSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKA 428
LS GN VI++ + +L + + + ++G + Q I +A ++
Sbjct: 584 LSSDYLGNTVIQKLFENSSNIIRDIMLRKCNKYLTSMGVHKNGTWVCQKIIKMANTPRQI 643
Query: 429 RLIADVVANAYV-LSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVV 487
L+ V++ L +GNYV+Q IL P + + + ++ + + S V
Sbjct: 644 NLVTSGVSDYCTPLFNDQFGNYVIQGILKFGFPW-NSFIFESVLSHFWTIVQNRYGSRAV 702
Query: 488 QKCL 491
+ CL
Sbjct: 703 RACL 706
>sp|Q9LVG3|PUM18_ARATH Pumilio homolog 18 OS=Arabidopsis thaliana GN=APUM18 PE=2 SV=1
Length = 327
Score = 37.4 bits (85), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 24/223 (10%)
Query: 238 SSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDD---LHELMRHQSANH 294
+S L + + D G + ++ + + +++ + S + D ++ + +
Sbjct: 36 ASATPLHAALFNLMTDGDGVSYFKEMISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSR 95
Query: 295 LIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQ 354
+QKL+G + + + + +R L I D S V + + + ++ L +
Sbjct: 96 RVQKLLG--KSDDVDAFFCAAI--LRRFLHITTDKYASYVTIRAMVVFDKVMKKALYER- 150
Query: 355 QSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKD-LLEEIAENCLDLATDRSGCC 413
+L AL L+ HG + + Y +D LLE +A N L L+ D SG
Sbjct: 151 --ILYHAL-----DLACDQHGCIALNDIITDADDPYYRDQLLELVASNALRLSNDASGNF 203
Query: 414 LLQYCIPLAQEEQKARLIADVVANAY----VLSEHSYGNYVVQ 452
++Q+ + L +R I ++ N Y LS YG+Y+V+
Sbjct: 204 VVQHVLTL----YDSRCIHNIAVNLYGQCIELSFKKYGSYIVE 242
>sp|C4Y3N8|NOP9_CLAL4 Nucleolar protein 9 OS=Clavispora lusitaniae (strain ATCC 42720)
GN=NOP9 PE=3 SV=1
Length = 715
Score = 37.0 bits (84), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 73/169 (43%), Gaps = 31/169 (18%)
Query: 376 NHVIKRCLQKFPPDY-----TKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARL 430
+ +I++ QKF P+Y ++D E+ EN L LA+ G + P A+E +++
Sbjct: 452 DELIEQLFQKFAPNYNVSDPSEDTTTELFENVLQLASSTLGNTRDDW--PTAEERRRSLF 509
Query: 431 IADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKC 490
+ L ++ Y V ++ + +PQ R + S+V++
Sbjct: 510 LEK-------LMQYDYSFVVCVWLNCMALPQ----------ERLMQMCFHGVFSHVIEHA 552
Query: 491 LL----ESGEEQSTGIINEI---IRHPEIVQLILDPYGNYVIQTAWDVS 532
L+ GE + I+ + + +I +L + YG++++ WD +
Sbjct: 553 LVVKPASEGEPKEVLILRKKFLNLFQGKIFELACNSYGSHIVDKLWDFT 601
>sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1
Length = 523
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 6 DHGDDLRWR--FPPPENNSRHPVTTSQQSHVASQNLHLIPIYQKPNQQDYHVENPSLQNP 63
DHG WR + PP ++ R + + + H L ++ Y + +Q + E
Sbjct: 284 DHGPPDNWRSTYYPPSDHLR--IASMVKRHRVIYCLEVVKYYDETSQYTVNEE------- 334
Query: 64 TTQDQLSGHL-HYSNYPYDKSLAMEPSTCRCRTPESGLSRPSQFAAPRPPLSQYLP 118
++LS L H + Y+K + R RT E L Q+ P P L+ ++P
Sbjct: 335 --MEELSDSLNHVRGFMYEKDVTYMDFLNRVRTGELNLKSKGQWDVPHPWLNLFVP 388
>sp|P21847|ALBU_LITCT Serum albumin (Fragment) OS=Lithobates catesbeiana GN=ALB PE=2 SV=1
Length = 382
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 17/98 (17%)
Query: 437 NAYVLSEHSYGNYVVQYILG--LKIPQVTADVVAQLAGRYFALSLGKC--SSNVVQKC-- 490
N L + +Y +Q + K+PQVTA + +LAGR +++ C + N Q C
Sbjct: 191 NCGALQLLGFRDYNIQLLFRYFFKMPQVTAPTLVELAGRMTKVAVYCCGLAENKQQTCAE 250
Query: 491 ------LLESGEEQSTGIINEIIRHPEIVQLILDPYGN 522
L E E++ +N+ +RH +D Y N
Sbjct: 251 EKLDILLGEMCEKEKHTFVNDNVRH-----CCVDSYAN 283
>sp|Q5BEG5|IWS1_EMENI Transcription factor iws1 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=iws1 PE=3
SV=2
Length = 469
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 244 RGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIG-- 301
R R + A DE + +++ +++ ID+E + I+D+ + M H + I + G
Sbjct: 192 RRRALDRAMDEALKKPTKRRARKQDGIDLEQMADAEIEDMRKRMTHAAQMDAINRREGKP 251
Query: 302 VLNEEQMTKLILSVVSSQQRLLRICDD----LSGSRVMQKLLDAGEYPT----RQQLTQ- 352
+++ +M ++S+++ Q + + D L + + LD G P R +T
Sbjct: 252 AMHKLKMLPEVVSLLNRNQYVNSLVDPEINLLEAVKFFLEPLDDGSLPAYNIQRDLMTAL 311
Query: 353 -----EQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLE 396
+++L+ S + + V ++S IKR ++ ++T+ +L+
Sbjct: 312 GKLPINKETLIASGIGKVVVFYTRSKRPEPGIKRMAERLLAEWTRPILQ 360
>sp|A8P7F7|NOP9_COPC7 Nucleolar protein 9 OS=Coprinopsis cinerea (strain Okayama-7 / 130
/ ATCC MYA-4618 / FGSC 9003) GN=NOP9 PE=3 SV=1
Length = 796
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 395 LEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAY-VLSEHSYGNYVVQY 453
L E+ E LATD C ++ + + ++ R+ D +A ++ +L++H + ++VVQ
Sbjct: 109 LNEMREKEKQLATD-PDCSVILERMAHSMDDFVRRVFVDSLAGSFEILAKHRFASHVVQT 167
Query: 454 ILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIV 513
+ + + +A+ +F G+ S L + + + I E++ P +
Sbjct: 168 LF-----VIARETIARETRGFFPKMEGQEDSGE-----LRTLTQLTLDICEELL--PNLS 215
Query: 514 QLILDPYGNYVIQT 527
L+LDP+ ++V++
Sbjct: 216 SLVLDPFASHVLRA 229
>sp|Q75C70|NOP9_ASHGO Nucleolar protein 9 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=NOP9 PE=3 SV=2
Length = 678
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 57/297 (19%), Positives = 133/297 (44%), Gaps = 54/297 (18%)
Query: 286 LMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICD-DLSGSRVMQKLLDAGEY 344
L+ +H +Q +IG +Q+ +L + Q R++++ D +G+ V+ LL
Sbjct: 346 LLSDSVGSHFLQAVIGFARTKQVERLY--KLYMQDRIVKLAKRDTTGAFVIMSLL----- 398
Query: 345 PTRQQL-TQEQQSLLVSALKNITVSL-SKSPHGNHVIKRCLQKFPPDYTK-DLLEE---- 397
Q L ++E +S+L + +++ L S G+ +I+ +++ DY K +++E+
Sbjct: 399 ---QNLGSKEVKSILDDLVPELSILLNSNLDFGSEIIEASIRQ--GDYKKTEIVEQLGKK 453
Query: 398 ----------IAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYG 447
I E+CL LA+ G + P A E ++A + ++ ++
Sbjct: 454 YYPADSESKNILESCLQLASSTLGNTKDDW--PTADERRRALFLEKLI---------NFD 502
Query: 448 NYVVQYILG--LKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINE 505
+Y ++ + L +P+ R + S+VV+ L E +
Sbjct: 503 DYFLEIAVESLLNLPE----------ERIMQMCYHGVFSHVVEHVLQAKRVETVKRKLLL 552
Query: 506 IIRHPEIVQLILDPYGNYVIQTAWDVSQGRRI-RQTLYDLVVDNSPFLQSHMYGKNV 561
I + + V L + YG++++ W+ + + ++ + +L+++ + +++ +YG+ V
Sbjct: 553 NILYKDAVNLACNAYGSHIMDKLWEFTAKLTLYKERIANLLLEEADKVKNSIYGRQV 609
>sp|O72910|VLTF2_FOWPN Viral late gene transcription factor 2 OS=Fowlpox virus (strain
NVSL) GN=VLTF2 PE=2 SV=1
Length = 154
Score = 32.7 bits (73), Expect = 9.2, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 237 YSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLI 296
Y +I + R + + KD+ C F ++ ++ NP IE + + I + S ++I
Sbjct: 35 YHTIADKR---LEIRKDKDNCWFCKQDMNTYNPYFIETLYGDHIGVFCSKICRDSFANMI 91
Query: 297 QKLIGVLNEEQMTKLILSVVSSQQRLLRICDDL 329
+ +I + E +++ L L + + +L + +DL
Sbjct: 92 KSVIALREEPKISLLPLELYEKPEEVLEVINDL 124
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 220,292,239
Number of Sequences: 539616
Number of extensions: 9409075
Number of successful extensions: 27573
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 26968
Number of HSP's gapped (non-prelim): 213
length of query: 579
length of database: 191,569,459
effective HSP length: 123
effective length of query: 456
effective length of database: 125,196,691
effective search space: 57089691096
effective search space used: 57089691096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)