Query 048735
Match_columns 579
No_of_seqs 253 out of 1556
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 12:33:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1488 Translational represso 100.0 4E-66 8.6E-71 552.5 35.1 322 238-571 172-501 (503)
2 cd07920 Pumilio Pumilio-family 100.0 8.3E-56 1.8E-60 462.3 32.3 315 239-565 3-322 (322)
3 KOG2049 Translational represso 100.0 1.3E-49 2.8E-54 429.1 21.6 319 239-565 211-532 (536)
4 COG5099 RNA-binding protein of 100.0 2E-46 4.2E-51 422.5 35.0 315 245-570 441-762 (777)
5 cd07920 Pumilio Pumilio-family 100.0 6.7E-41 1.5E-45 349.9 29.7 277 239-528 40-322 (322)
6 KOG1488 Translational represso 100.0 2.8E-37 6.1E-42 330.9 30.1 282 235-529 206-496 (503)
7 COG5099 RNA-binding protein of 100.0 5.7E-30 1.2E-34 289.4 16.9 242 322-574 443-686 (777)
8 KOG2049 Translational represso 100.0 2.3E-29 5.1E-34 272.3 19.7 273 240-526 248-530 (536)
9 KOG2188 Predicted RNA-binding 100.0 6.2E-28 1.3E-32 259.3 26.9 332 240-579 94-617 (650)
10 KOG2050 Puf family RNA-binding 100.0 2.4E-28 5.3E-33 259.9 21.8 284 240-568 159-443 (652)
11 KOG2188 Predicted RNA-binding 99.8 5.4E-19 1.2E-23 190.8 23.7 263 246-528 337-605 (650)
12 KOG2050 Puf family RNA-binding 99.8 3.6E-18 7.8E-23 182.7 23.9 245 240-497 195-447 (652)
13 KOG4574 RNA-binding protein (c 99.7 7.4E-17 1.6E-21 177.5 15.6 288 269-570 534-854 (1007)
14 KOG4574 RNA-binding protein (c 99.2 3.6E-12 7.7E-17 141.1 2.7 199 228-435 525-766 (1007)
15 PF07990 NABP: Nucleic acid bi 98.5 2.4E-07 5.2E-12 97.3 6.6 88 150-240 289-384 (385)
16 PF00806 PUF: Pumilio-family R 98.2 1E-06 2.2E-11 61.6 2.8 34 279-312 2-35 (35)
17 PF00806 PUF: Pumilio-family R 97.9 1E-05 2.2E-10 56.5 2.9 35 242-276 1-35 (35)
18 smart00025 Pumilio Pumilio-lik 97.8 1.6E-05 3.5E-10 55.0 2.7 34 279-312 2-35 (36)
19 smart00025 Pumilio Pumilio-lik 97.6 3.9E-05 8.5E-10 53.1 2.3 34 243-276 2-35 (36)
20 PRK05686 fliG flagellar motor 91.1 24 0.00052 37.6 19.7 93 445-545 201-298 (339)
21 PRK05686 fliG flagellar motor 90.6 26 0.00057 37.2 21.5 209 304-551 56-292 (339)
22 PF08144 CPL: CPL (NUC119) dom 89.4 1.4 3E-05 41.3 7.4 60 511-570 65-134 (148)
23 PF08144 CPL: CPL (NUC119) dom 87.7 5.8 0.00013 37.1 10.4 86 370-460 1-88 (148)
24 TIGR00207 fliG flagellar motor 84.3 62 0.0013 34.5 17.8 51 266-316 51-103 (338)
25 TIGR00207 fliG flagellar motor 70.9 1.5E+02 0.0033 31.6 22.8 92 446-545 199-295 (338)
26 COG1747 Uncharacterized N-term 70.4 1.6E+02 0.0035 33.3 15.4 67 272-341 45-111 (711)
27 KOG3821 Heparin sulfate cell s 66.1 1.5E+02 0.0033 33.5 14.3 203 254-466 90-325 (563)
28 PF11510 FA_FANCE: Fanconi Ana 65.2 87 0.0019 32.2 11.7 19 262-280 42-60 (263)
29 KOG0905 Phosphoinositide 3-kin 64.8 65 0.0014 39.6 11.8 12 98-109 119-130 (1639)
30 KOG1924 RhoA GTPase effector D 62.1 50 0.0011 38.6 10.0 46 278-326 717-762 (1102)
31 KOG1240 Protein kinase contain 61.7 3.2E+02 0.0069 34.1 16.7 157 288-457 439-601 (1431)
32 KOG1059 Vesicle coat complex A 56.5 4E+02 0.0086 31.4 17.1 78 418-495 360-442 (877)
33 PF14666 RICTOR_M: Rapamycin-i 52.8 47 0.001 33.3 7.2 131 410-548 83-223 (226)
34 COG5095 TAF6 Transcription ini 52.2 3.1E+02 0.0067 29.0 14.0 26 255-280 198-223 (450)
35 PF12231 Rif1_N: Rap1-interact 47.8 3.9E+02 0.0083 28.8 15.8 48 447-495 177-224 (372)
36 PF05918 API5: Apoptosis inhib 47.5 4.9E+02 0.011 29.8 18.5 39 419-457 234-272 (556)
37 PF04286 DUF445: Protein of un 46.1 3.7E+02 0.008 28.1 20.2 13 495-507 326-338 (367)
38 COG1536 FliG Flagellar motor s 46.0 4E+02 0.0088 28.5 17.6 36 483-520 263-298 (339)
39 PF12231 Rif1_N: Rap1-interact 44.9 3.6E+02 0.0078 29.0 13.0 23 281-303 77-99 (372)
40 cd07439 FANCE_c-term Fanconi a 43.7 3.8E+02 0.0082 27.5 13.5 42 240-281 7-52 (254)
41 KOG1059 Vesicle coat complex A 41.6 3E+02 0.0065 32.4 11.8 75 495-572 365-444 (877)
42 PF13764 E3_UbLigase_R4: E3 ub 41.4 7E+02 0.015 30.0 18.1 53 438-495 299-351 (802)
43 PF05918 API5: Apoptosis inhib 40.3 6.2E+02 0.013 29.0 18.4 109 457-567 144-271 (556)
44 KOG1992 Nuclear export recepto 39.1 7.6E+02 0.016 29.7 17.7 209 325-535 512-755 (960)
45 PF04078 Rcd1: Cell differenti 38.6 80 0.0017 32.4 6.3 80 259-342 119-213 (262)
46 KOG1070 rRNA processing protei 38.4 3.4E+02 0.0073 34.4 12.2 107 465-579 1531-1637(1710)
47 KOG2932 E3 ubiquitin ligase in 37.6 5.2E+02 0.011 27.3 12.6 66 43-112 187-252 (389)
48 COG5181 HSH155 U2 snRNP splice 37.5 7.2E+02 0.016 29.0 16.9 55 512-566 510-566 (975)
49 PF01603 B56: Protein phosphat 37.5 5.8E+02 0.013 27.9 16.7 72 460-534 250-323 (409)
50 PF09770 PAT1: Topoisomerase I 36.3 43 0.00093 40.0 4.7 97 246-342 576-695 (808)
51 PF14967 FAM70: FAM70 protein 34.1 1.9E+02 0.0042 30.1 8.2 38 102-140 251-288 (327)
52 KOG1924 RhoA GTPase effector D 33.2 9.2E+02 0.02 28.9 17.5 49 240-288 715-763 (1102)
53 KOG1248 Uncharacterized conser 33.0 1.1E+03 0.023 29.6 19.0 27 333-367 719-745 (1176)
54 COG1536 FliG Flagellar motor s 32.5 6.5E+02 0.014 26.9 19.8 30 521-551 263-292 (339)
55 PRK07194 fliG flagellar motor 32.3 6.3E+02 0.014 26.8 18.4 51 266-316 49-101 (334)
56 KOG0132 RNA polymerase II C-te 31.6 2.9E+02 0.0063 32.6 9.8 36 99-134 582-620 (894)
57 PF04286 DUF445: Protein of un 31.3 6.2E+02 0.013 26.3 22.7 55 497-554 290-347 (367)
58 KOG1992 Nuclear export recepto 30.9 1E+03 0.022 28.7 14.5 52 411-462 700-756 (960)
59 KOG1248 Uncharacterized conser 30.8 9E+02 0.019 30.2 14.0 62 255-316 673-741 (1176)
60 KOG2759 Vacuolar H+-ATPase V1 30.3 7.8E+02 0.017 27.2 13.5 32 463-494 312-344 (442)
61 cd07439 FANCE_c-term Fanconi a 30.1 6.2E+02 0.013 25.9 13.5 201 274-488 5-216 (254)
62 PF08625 Utp13: Utp13 specific 29.3 3.5E+02 0.0076 25.0 8.5 27 375-401 47-73 (141)
63 PF10873 DUF2668: Protein of u 27.7 1E+02 0.0022 28.8 4.4 53 89-149 83-137 (155)
64 PF14631 FancD2: Fanconi anaem 26.0 1.2E+03 0.025 30.2 14.7 26 278-303 211-236 (1426)
65 PTZ00429 beta-adaptin; Provisi 25.9 1.2E+03 0.026 27.8 21.4 297 260-574 37-401 (746)
66 PF09770 PAT1: Topoisomerase I 25.9 1E+02 0.0023 36.8 5.5 94 401-494 576-695 (808)
67 PF12069 DUF3549: Protein of u 25.4 8.6E+02 0.019 26.1 12.7 23 240-263 77-99 (340)
68 TIGR00400 mgtE Mg2+ transporte 25.3 4.1E+02 0.0089 29.3 9.7 24 258-281 21-44 (449)
69 KOG0917 Uncharacterized conser 25.1 2.6E+02 0.0057 28.9 7.2 66 104-174 175-245 (338)
70 PRK07003 DNA polymerase III su 25.0 1.3E+03 0.027 27.9 16.6 126 304-435 132-257 (830)
71 KOG1824 TATA-binding protein-i 23.9 1.3E+03 0.028 28.4 13.4 35 259-293 501-535 (1233)
72 KOG2137 Protein kinase [Signal 23.8 5E+02 0.011 30.4 10.0 45 320-366 257-301 (700)
73 PF11510 FA_FANCE: Fanconi Ana 23.5 8.3E+02 0.018 25.2 12.0 18 299-316 43-60 (263)
74 KOG4368 Predicted RNA binding 23.4 1.2E+03 0.025 26.9 12.5 165 293-486 70-252 (757)
75 PF05794 Tcp11: T-complex prot 22.7 7E+02 0.015 27.2 11.0 64 239-306 20-84 (441)
76 PF08261 Carcinustatin: Carcin 22.2 44 0.00096 15.7 0.6 6 126-131 2-7 (8)
77 PLN03083 E3 UFM1-protein ligas 21.6 1.4E+03 0.031 27.3 17.9 42 294-342 531-572 (803)
78 PF08625 Utp13: Utp13 specific 21.3 6.6E+02 0.014 23.2 10.0 17 411-427 47-63 (141)
79 KOG3811 Transcription factor A 20.8 1.1E+03 0.025 25.8 13.3 360 86-484 19-415 (434)
80 PF10521 DUF2454: Protein of u 20.2 9.4E+02 0.02 24.6 11.7 53 330-390 95-154 (282)
No 1
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-66 Score=552.46 Aligned_cols=322 Identities=28% Similarity=0.458 Sum_probs=312.6
Q ss_pred ccHHHHhhhHHHHhcCCCccHHHHhhhccCCH-HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHHHHH
Q 048735 238 SSIEELRGRIILVAKDEQGCRFLQKKVDERNP-IDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVV 316 (579)
Q Consensus 238 ~~L~ei~Gki~eLa~Dq~gSr~LQ~lLe~~~~-e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~l~ 316 (579)
..+.++.|+++++++||+||||||+.|+.+++ +++..||++|.+.+.+||+|.||||||||++|+++.+++..+...+.
T Consensus 172 l~~~~~~~~~v~f~~Dq~GsrfiQqkl~~~~~~~ek~~if~ei~~~~~~L~~dvFGNyvIQkffE~gt~~q~~~l~~~~~ 251 (503)
T KOG1488|consen 172 LELVDIPGHLVEFAKDQHGSRFIQQKLETASDNEEKQAVFDEILPPALELMTDVFGNYVIQKFFEHGTEDQRNLLHSQIK 251 (503)
T ss_pred ccccccCCCceeecCCcccchHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhccCCHHHHHHHHHHHH
Confidence 34788899999999999999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred hhchhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCCCchhhhhhccccCccchHHHHH
Q 048735 317 SSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLE 396 (579)
Q Consensus 317 ~~~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~~~~~~~Ii~ 396 (579)
+++..||.|+||||||||+|+.+ +.++...|++||.++++.+++|++||||||||+|+.+++.+++|++
T Consensus 252 ---g~v~~Lsld~ygCRVIQkale~i--------d~~~~~~Li~ELd~~vl~~v~DQngnHViQK~ie~~p~~~~~Fiv~ 320 (503)
T KOG1488|consen 252 ---GHVLELSLDMYGCRVIQKALEKV--------DVSLQIQLIDELDGHLLKCVKDQNGNHVIQKCIETLPPDAWQFIVD 320 (503)
T ss_pred ---hhhhhhhcccccchhHHHHHHhc--------CHHHHHHHHHHHHhhHHHHHhhcccceehhhhhhccChHHHHHHHH
Confidence 99999999999999999999999 7999999999999999999999999999999999999999999999
Q ss_pred HHHH--hhHhhccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCChhhHHHHHHHHHHhH
Q 048735 397 EIAE--NCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRY 474 (579)
Q Consensus 397 ~l~~--~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~~~r~~Ii~~L~g~~ 474 (579)
.+.+ ++..+++|+|||+|||++||+|+++++..|+++|..++..|+.|+|||||||++|+++.+..+..|+++|.+++
T Consensus 321 ~f~~~~~~~~ls~~~YGCRVIQr~lE~c~~~~~~~i~~ei~~~~~~L~~dQygNYVIQHVie~g~~~~~~~I~~~l~~~l 400 (503)
T KOG1488|consen 321 FFSGDDNLLELSTHKYGCRVIQRILEHCSEDQKQPLMEEIIRNCDQLAQDQYGNYVIQHVIEHGSPYRDTIIIKCLLGNL 400 (503)
T ss_pred HhcCCCceeEeeccCcccHHHHHHhhcCChHhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCChhhhhhHHHHHHhhH
Confidence 9998 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcchHHHHHHHHhhcCHHHHHHHHHHHhCh-----hhHHHhhcCcChHHHHHHHHhcCCcHHHHHHHHHHHHhhH
Q 048735 475 FALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRH-----PEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDNS 549 (579)
Q Consensus 475 ~~Ls~~k~GS~VVEk~L~~a~~~~r~~Ii~eL~~~-----~~l~~L~~d~~GnyVVQklL~~~~~~~~re~Ll~~L~~~l 549 (579)
++||.|||+|+|||+|+.+++..+|..|++|+++. +.|..|++|+|||||||++++.|.+ .+|++|..+|++|+
T Consensus 401 l~~Sq~KfASnVVEk~~~~a~~~~r~~i~~Ei~~~~~~~~~~L~~mmkdQYgNYVVQkmi~~~~~-~q~~~i~~rI~~h~ 479 (503)
T KOG1488|consen 401 LSMSQHKFASNVVEKAFLFAPPLLRALIMNEIFPGYVEHPDALDIMMKDQYGNYVVQKMIDICGP-EQRELIKSRVKPHA 479 (503)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCccCCccHHHHHHHHhhhhhHHHHHHHhcCH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999985 4799999999999999999999988 89999999999999
Q ss_pred HHHhhCCchHHHHHHHHhcccc
Q 048735 550 PFLQSHMYGKNVLAKVRGNKNR 571 (579)
Q Consensus 550 ~~L~~~~~G~~Vv~kl~~~~~~ 571 (579)
..|++++||+||+++|++....
T Consensus 480 ~~Lrk~syGKhIia~lek~~~~ 501 (503)
T KOG1488|consen 480 SRLRKFSYGKHIIAKLEKLRSK 501 (503)
T ss_pred HHHccCccHHHHHHHHHHhccc
Confidence 9999999999999999987653
No 2
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=8.3e-56 Score=462.34 Aligned_cols=315 Identities=38% Similarity=0.651 Sum_probs=306.9
Q ss_pred cHHHHh-hhHHHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHHHHHh
Q 048735 239 SIEELR-GRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVS 317 (579)
Q Consensus 239 ~L~ei~-Gki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~l~~ 317 (579)
+++++. |++.++|+|++|||+||++|+.++++++..|++++.|++.+||+|+|||||+|++|++++++++..|++.+.
T Consensus 3 ~~~~~~~~~~~~l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~- 81 (322)
T cd07920 3 TLQDIKAGHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKIL- 81 (322)
T ss_pred CHHhccCcchhhccCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHH-
Confidence 577787 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCCCchhhhhhccccCccchHHHHHH
Q 048735 318 SQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEE 397 (579)
Q Consensus 318 ~~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~~~~~~~Ii~~ 397 (579)
+++.+|+.|+|||||||++++.+ .++++..+++++.+++..|+.|++||||+|+++++++++.++.|++.
T Consensus 82 --~~~~~l~~~~~g~~vlqkll~~~--------~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~ 151 (322)
T cd07920 82 --GHVVRLSLDMYGCRVIQKLLESI--------SEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDA 151 (322)
T ss_pred --HHHHHHcccchhHHHHHHHHHhc--------CHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999 68999999999999999999999999999999999999999999999
Q ss_pred HHHhhHhhccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCChhhHHHHHHHHHHhHHhh
Q 048735 398 IAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFAL 477 (579)
Q Consensus 398 l~~~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~~~r~~Ii~~L~g~~~~L 477 (579)
+.+++..++.|++||+|+|++++.++++.+..+++++.+++..|+.|+|||||||++|+.++++.++.|++.+.+++.+|
T Consensus 152 l~~~~~~l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l 231 (322)
T cd07920 152 FKGNCVALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQL 231 (322)
T ss_pred HHHHHHHHHcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHhhcCHHHHHHHHHHHhCh----hhHHHhhcCcChHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHh
Q 048735 478 SLGKCSSNVVQKCLLESGEEQSTGIINEIIRH----PEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQ 553 (579)
Q Consensus 478 s~~k~GS~VVEk~L~~a~~~~r~~Ii~eL~~~----~~l~~L~~d~~GnyVVQklL~~~~~~~~re~Ll~~L~~~l~~L~ 553 (579)
+.+||||+|||+|++.++++.|+.|+++++.. +++.+|+.|+|||||||++|+.+++ .+++.|++.|.+++.+|+
T Consensus 232 ~~~k~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~-~~~~~i~~~l~~~~~~L~ 310 (322)
T cd07920 232 SCHKFASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKE-EQRELLVEAIRPHLPSLR 310 (322)
T ss_pred HcCcchHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999873 3899999999999999999999998 899999999999999999
Q ss_pred hCCchHHHHHHH
Q 048735 554 SHMYGKNVLAKV 565 (579)
Q Consensus 554 ~~~~G~~Vv~kl 565 (579)
.++||++|++++
T Consensus 311 ~~~~G~~v~~~~ 322 (322)
T cd07920 311 KSPYGKHILAKL 322 (322)
T ss_pred CCCcHHHHHHhC
Confidence 999999999975
No 3
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-49 Score=429.14 Aligned_cols=319 Identities=40% Similarity=0.641 Sum_probs=306.1
Q ss_pred cHHHHhhhHHHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHHHHHhh
Q 048735 239 SIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSS 318 (579)
Q Consensus 239 ~L~ei~Gki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~l~~~ 318 (579)
++.+..|.+..+|+|++|||++|+++..++......|+.++..++.+||.|+||++++|+++++|+++|+..|+..++++
T Consensus 211 ~~~~~~~~~~~~akd~~gc~~lq~~~~~~~~~~~~~if~~~~~~~~~Lm~d~fGny~vqkl~~~~~~eq~~~i~~~lts~ 290 (536)
T KOG2049|consen 211 SMVEIQGSINLIAKDQHGCRLLQKLLSEGTKVSILKIFLETIQDVPELMEDPFGNYLVQKLLEVCDEEQLTKIVSLLTSD 290 (536)
T ss_pred hhhccchhhhhhcccccCCcccccCcccCccccHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhCHHHHHHHHHHHhcC
Confidence 46888899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred chhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCCCchhhhhhccccCccchHHHHHHH
Q 048735 319 QQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEI 398 (579)
Q Consensus 319 ~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~~~~~~~Ii~~l 398 (579)
++.|+.++.++||+++||++++.. . +.+|+..++++|.+.+..|++|.||+||+|+|+.+++++..+++++++
T Consensus 291 p~~fv~i~~N~~GTr~iQkl~~~~--~-----~~dqI~~~~~ai~~~fl~L~~D~~g~~Viq~cl~~f~~~~~~~l~e~i 363 (536)
T KOG2049|consen 291 PRLFVEICTNMYGTRAVQKLLGKS--D-----SVDQISLFLDAIKPNFLHLIKDKNGNHVIQRCLRVFSKEKNEFLYEAI 363 (536)
T ss_pred ccceeEeeecCchhHHHHHHHhcc--c-----cHHHHHHHHHHHHhhhHHhhhhcchhHHHHHHHHhcCchhhhHHHHHH
Confidence 889999999999999999999999 7 788999999999999999999999999999999999999999999999
Q ss_pred HHhhHhhccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCChhhHHHHHHHHHHhHHhhc
Q 048735 399 AENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALS 478 (579)
Q Consensus 399 ~~~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~~~r~~Ii~~L~g~~~~Ls 478 (579)
...+.++|+|++||+|||+||....+++++.|++++..+...|+.|+|||||||++|+...+.....|+..|.|++++||
T Consensus 364 ~~~c~~iA~~~hGCcvLq~cl~~~~~~~rd~Lv~~i~~naL~Ls~d~~GNyvVQyvl~L~~~~~t~~i~~~L~g~~veLS 443 (536)
T KOG2049|consen 364 LRYCLDLATDQHGCCVLQKCLDYSRGEQRDRLVEEISRNALLLSNDPYGNYVVQYVLELNDPSCTVNIAEKLRGHYVELS 443 (536)
T ss_pred HHHHHHHHHhccccchhHHHhcchhHHHHHHHHHHHHHHhHhhhcCccccchhhhhhhhcCcchHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHhhcCHHHHHHHHHHHhChhhHHHhhcCcChHHHHHHHHhcCCc---HHHHHHHHHHHHhhHHHHhhC
Q 048735 479 LGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQG---RRIRQTLYDLVVDNSPFLQSH 555 (579)
Q Consensus 479 ~~k~GS~VVEk~L~~a~~~~r~~Ii~eL~~~~~l~~L~~d~~GnyVVQklL~~~~~---~~~re~Ll~~L~~~l~~L~~~ 555 (579)
.+|||||||||||+.+... +..|+.||++.+.+..|+.|+|||||||++|..++. ...+..+++.+.+.+..|++.
T Consensus 444 ~qKfgS~vVEk~L~~~~~~-~~~iV~ell~~~~~~~Ll~D~ygNyViq~AL~vtk~~~~~~~~~~lv~~~~~~~~~lr~~ 522 (536)
T KOG2049|consen 444 FQKFGSHVVEKLLKVRESS-RAQIVLELLSCDELDRLLRDPYGNYVIQTALRVTKVKLREDLFGLLVQKLMPRIRLLRNN 522 (536)
T ss_pred HHhhccHHHHHHHhcCcch-hhHHHHHHHccccHHHHhhCccchHHHHHHHHHhhhcccchhhHHHHHHHhhhhHHhhcC
Confidence 9999999999999998744 488999998877899999999999999999999984 258899999999999999999
Q ss_pred CchHHHHHHH
Q 048735 556 MYGKNVLAKV 565 (579)
Q Consensus 556 ~~G~~Vv~kl 565 (579)
++|++|..+.
T Consensus 523 p~~~~~~~~~ 532 (536)
T KOG2049|consen 523 PGGNIALIKD 532 (536)
T ss_pred cccceeeehh
Confidence 9999987765
No 4
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-46 Score=422.46 Aligned_cols=315 Identities=35% Similarity=0.524 Sum_probs=299.7
Q ss_pred hhHHHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHHHHHhhchhhhh
Q 048735 245 GRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLR 324 (579)
Q Consensus 245 Gki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~l~~~~g~~~~ 324 (579)
+.+.-.++||+|||+||++|+.-+.++++.++.++.+...+||+|.|||||+||++|+++++|+..++..+. +++..
T Consensus 441 ~~~~~~~~Dq~g~r~LQk~Lds~s~~~~~~~~~e~~d~~~eLs~d~fGNyliQK~fe~~s~~q~~~ml~~~~---~~~~~ 517 (777)
T COG5099 441 PSIIVSCKDQHGSRFLQKLLDSNSSPEIEVIFNEILDQLVELSSDYFGNYLIQKLFEYGSEIQKSIMLSKSS---KHLVS 517 (777)
T ss_pred CccccccCCcHHHHHHHHHhcccchHHHHHHHHHHhhhhHHHHHhhhcchhhHHHHHhccHHHHHHHHHHhh---hhHHH
Confidence 333333799999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCCCchhhhhhccccCccchHHHHHHHHHhhHh
Q 048735 325 ICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLD 404 (579)
Q Consensus 325 La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~~~~~~~Ii~~l~~~l~~ 404 (579)
|+.++|||||+||+++.+ . ++++...+++++.+++..|++|++||||+|||++.+..+...+|++.+.+++.+
T Consensus 518 ls~~~~Gtrv~QK~id~~--~-----t~~qi~~lv~~l~~~~~~li~dqngNHviqKci~~~~~~~~~fif~~~~~~~~~ 590 (777)
T COG5099 518 LSVHKYGTRVLQKAIDIV--S-----TDIQISLLVEELRPYCLQLIKDQNGNHVIQKCIEKFNKEKNQFIFDSINENLYD 590 (777)
T ss_pred hhccccccHHHHHHHhcc--C-----chhhHHHHHHHhhhhhHHHHHhccCCHHHHHHHHhcCccccchHHHHHHhhhHh
Confidence 999999999999999999 7 788888999999999999999999999999999999999999999999999999
Q ss_pred hccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCChhhHHHHHHHHHH-hHHhhcCCcch
Q 048735 405 LATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAG-RYFALSLGKCS 483 (579)
Q Consensus 405 La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~~~r~~Ii~~L~g-~~~~Ls~~k~G 483 (579)
+++|+|||+|||+|+|.+..++.+.++++|..+...|++|+|||||||++|+.+.+..++.|+..+.. ++++|+.||||
T Consensus 591 is~~r~Gs~vvq~~le~~~~~~~~~~~~~Ii~~~~~L~~dq~GNyvvq~il~~g~~~~k~~i~~~~l~~~v~elS~~kfa 670 (777)
T COG5099 591 LSTHRYGSRVVQRCLENCNSEDKENLVEEIISNSKYLSQDQYGNYVVQHILDNGAEPNKERIIIKLLSKRVVELSTHKFA 670 (777)
T ss_pred hhccccccHHHHHHHHhccHhHHHHHHHHHHHHHHhhccCCcchhhhhHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888 99999999999
Q ss_pred HHHHHHHHhhcCHHH-HHHHHHHHhC----hhh-HHHhhcCcChHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHhhCCc
Q 048735 484 SNVVQKCLLESGEEQ-STGIINEIIR----HPE-IVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQSHMY 557 (579)
Q Consensus 484 S~VVEk~L~~a~~~~-r~~Ii~eL~~----~~~-l~~L~~d~~GnyVVQklL~~~~~~~~re~Ll~~L~~~l~~L~~~~~ 557 (579)
|.|||||+.++...+ |+.|+.++.. .|. +..|+.|+|||||+|+++..... ..+..+.+.++.++..|.+.++
T Consensus 671 SnvVeK~i~~~~~~~~~~ril~~~~~~~~~~~~~l~~i~~d~y~Nyv~q~~~~~s~~-~~~~l~~~~i~~~~~~l~~s~~ 749 (777)
T COG5099 671 SNVVEKCIKYASDSFKRSRILNELTNRGIEKPGFLMLILDDQYANYVIQYLLDVSPE-IQRSLLARAIKKVIPSLKKSMY 749 (777)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHhcccccCChHHHHHHHhhhcchHHHHHHhhCch-hhHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999887 5999999987 344 88999999999999999999999 9999999999999999999999
Q ss_pred hHHHHHHHHhccc
Q 048735 558 GKNVLAKVRGNKN 570 (579)
Q Consensus 558 G~~Vv~kl~~~~~ 570 (579)
|+|+.+.+++...
T Consensus 750 g~~i~~~le~~~~ 762 (777)
T COG5099 750 GQHILALLEKVGS 762 (777)
T ss_pred cHHHHHHHHHHhc
Confidence 9999999987654
No 5
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=6.7e-41 Score=349.94 Aligned_cols=277 Identities=24% Similarity=0.366 Sum_probs=269.6
Q ss_pred cHHHHhhhHHHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHHHHHhh
Q 048735 239 SIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSS 318 (579)
Q Consensus 239 ~L~ei~Gki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~l~~~ 318 (579)
-++++.+++.+++.|++|++++|++|+.++++++..|++++.+++..|+.|+||++|+|++++.++++++..|++++.
T Consensus 40 i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~-- 117 (322)
T cd07920 40 IFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQKLLESISEEQISLLVKELR-- 117 (322)
T ss_pred HHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhcCHHHHHHHHHHHH--
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCCCchhhhhhccccCccchHHHHHHH
Q 048735 319 QQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEI 398 (579)
Q Consensus 319 ~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~~~~~~~Ii~~l 398 (579)
+++..|+.|.+|++|+|++++.+ +++++..+++.+.+++..++.|++|++|+|++++.++++.+..+++.+
T Consensus 118 -~~~~~L~~d~~gn~Vvq~~l~~~--------~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l 188 (322)
T cd07920 118 -GHVVELVKDQNGNHVIQKCIEKF--------PPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSEEQREPLLEEI 188 (322)
T ss_pred -HCHHHHhhcccccHHHHHHHHhC--------CHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999 799999999999999999999999999999999999999999999999
Q ss_pred HHhhHhhccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCChhhHHHHHHHHH------H
Q 048735 399 AENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLA------G 472 (579)
Q Consensus 399 ~~~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~~~r~~Ii~~L~------g 472 (579)
.+++..++.+++|++|||++++..+++.+..|++.+.+++..|+.++||++|+|++|+.+++..+..|++.+. +
T Consensus 189 ~~~~~~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~ 268 (322)
T cd07920 189 LEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKEERELIIDEILASGNETS 268 (322)
T ss_pred HHHHHHHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCHHHHHHHHHHHhcCCCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999885 4
Q ss_pred hHHhhcCCcchHHHHHHHHhhcCHHHHHHHHHHHhChhhHHHhhcCcChHHHHHHH
Q 048735 473 RYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTA 528 (579)
Q Consensus 473 ~~~~Ls~~k~GS~VVEk~L~~a~~~~r~~Ii~eL~~~~~l~~L~~d~~GnyVVQkl 528 (579)
++.+|+.|+||++||+++|+.+++..++.|+.+|.+ ++.+|+.++||+.||.++
T Consensus 269 ~l~~l~~d~~Gn~Viq~~l~~~~~~~~~~i~~~l~~--~~~~L~~~~~G~~v~~~~ 322 (322)
T cd07920 269 ALDTLMKDQYGNYVIQTALDVAKEEQRELLVEAIRP--HLPSLRKSPYGKHILAKL 322 (322)
T ss_pred HHHHHhCCCcccHHHHHHHHhCCHHHHHHHHHHHHH--HHHHHcCCCcHHHHHHhC
Confidence 899999999999999999999999999999999999 999999999999999874
No 6
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-37 Score=330.86 Aligned_cols=282 Identities=22% Similarity=0.260 Sum_probs=271.1
Q ss_pred CCcccHHHHhhhHHHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHHH
Q 048735 235 TSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILS 314 (579)
Q Consensus 235 ~~~~~L~ei~Gki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~ 314 (579)
.+...++||.+..++|++|-.|..+||+.++.++++++..+-..+.+++..|+.|.||++||||.|+..+.++..+|+++
T Consensus 206 ek~~if~ei~~~~~~L~~dvFGNyvIQkffE~gt~~q~~~l~~~~~g~v~~Lsld~ygCRVIQkale~id~~~~~~Li~E 285 (503)
T KOG1488|consen 206 EKQAVFDEILPPALELMTDVFGNYVIQKFFEHGTEDQRNLLHSQIKGHVLELSLDMYGCRVIQKALEKVDVSLQIQLIDE 285 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhhhhccCCHHHHHHHHHHHHhhhhhhhcccccchhHHHHHHhcCHHHHHHHHHH
Confidence 34556999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHh--hHhHhccCCCCchhhhhhccccCccchH
Q 048735 315 VVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKN--ITVSLSKSPHGNHVIKRCLQKFPPDYTK 392 (579)
Q Consensus 315 l~~~~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~--~i~~L~~D~~GnhVlQklLe~~~~~~~~ 392 (579)
+. +++..+++|++|+|||||++|.+ ..+....|++.+.+ ++..++.|+||+.|||++||.+..+...
T Consensus 286 Ld---~~vl~~v~DQngnHViQK~ie~~--------p~~~~~Fiv~~f~~~~~~~~ls~~~YGCRVIQr~lE~c~~~~~~ 354 (503)
T KOG1488|consen 286 LD---GHLLKCVKDQNGNHVIQKCIETL--------PPDAWQFIVDFFSGDDNLLELSTHKYGCRVIQRILEHCSEDQKQ 354 (503)
T ss_pred HH---hhHHHHHhhcccceehhhhhhcc--------ChHHHHHHHHHhcCCCceeEeeccCcccHHHHHHhhcCChHhhh
Confidence 98 99999999999999999999999 68999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHhhHhhccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCChhhHHHHHHHHHH
Q 048735 393 DLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAG 472 (579)
Q Consensus 393 ~Ii~~l~~~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~~~r~~Ii~~L~g 472 (579)
.|++.+..++..|+.++||++|||.++++.+++.+..|++.|.+++..|++|+|++.||++++..+++..|..|++++.+
T Consensus 355 ~i~~ei~~~~~~L~~dQygNYVIQHVie~g~~~~~~~I~~~l~~~ll~~Sq~KfASnVVEk~~~~a~~~~r~~i~~Ei~~ 434 (503)
T KOG1488|consen 355 PLMEEIIRNCDQLAQDQYGNYVIQHVIEHGSPYRDTIIIKCLLGNLLSMSQHKFASNVVEKAFLFAPPLLRALIMNEIFP 434 (503)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCChhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred -------hHHhhcCCcchHHHHHHHHhhcCHHHHHHHHHHHhChhhHHHhhcCcChHHHHHHHH
Q 048735 473 -------RYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAW 529 (579)
Q Consensus 473 -------~~~~Ls~~k~GS~VVEk~L~~a~~~~r~~Ii~eL~~~~~l~~L~~d~~GnyVVQklL 529 (579)
-+..|..|+||.+||+++|+.|++++|++|+..+.. ++..|-+..||.++|.++=
T Consensus 435 ~~~~~~~~L~~mmkdQYgNYVVQkmi~~~~~~q~~~i~~rI~~--h~~~Lrk~syGKhIia~le 496 (503)
T KOG1488|consen 435 GYVEHPDALDIMMKDQYGNYVVQKMIDICGPEQRELIKSRVKP--HASRLRKFSYGKHIIAKLE 496 (503)
T ss_pred CccCCccHHHHHHHHhhhhhHHHHHHHhcCHHHHHHHHHHHHH--HHHHHccCccHHHHHHHHH
Confidence 477799999999999999999999999999999999 9999999999999998853
No 7
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.7e-30 Score=289.36 Aligned_cols=242 Identities=22% Similarity=0.326 Sum_probs=229.4
Q ss_pred hhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCCCchhhhhhccccCccchHHHHHHHHHh
Q 048735 322 LLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAEN 401 (579)
Q Consensus 322 ~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~~~~~~~Ii~~l~~~ 401 (579)
+.-++.|.+|||-||+.|+.. ..++.+.++.++.+.+.+|+.|.+||+|+|+|+|.+....+..++..+.++
T Consensus 443 ~~~~~~Dq~g~r~LQk~Lds~--------s~~~~~~~~~e~~d~~~eLs~d~fGNyliQK~fe~~s~~q~~~ml~~~~~~ 514 (777)
T COG5099 443 IIVSCKDQHGSRFLQKLLDSN--------SSPEIEVIFNEILDQLVELSSDYFGNYLIQKLFEYGSEIQKSIMLSKSSKH 514 (777)
T ss_pred cccccCCcHHHHHHHHHhccc--------chHHHHHHHHHHhhhhHHHHHhhhcchhhHHHHHhccHHHHHHHHHHhhhh
Confidence 333379999999999999998 789999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCchhHHHHhhhhCCHHH-HHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCChhhHHHHHHHHHHhHHhhcCC
Q 048735 402 CLDLATDRSGCCLLQYCIPLAQEEQ-KARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLG 480 (579)
Q Consensus 402 l~~La~~k~Gs~VVQklLe~~~~~~-~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~~~r~~Ii~~L~g~~~~Ls~~ 480 (579)
+..++.|+|||+|+|++++...++. ...|++++.+.+..|++|++||||+|++++..+.+....|++.+.+++.+++.+
T Consensus 515 ~~~ls~~~~Gtrv~QK~id~~~t~~qi~~lv~~l~~~~~~li~dqngNHviqKci~~~~~~~~~fif~~~~~~~~~is~~ 594 (777)
T COG5099 515 LVSLSVHKYGTRVLQKAIDIVSTDIQISLLVEELRPYCLQLIKDQNGNHVIQKCIEKFNKEKNQFIFDSINENLYDLSTH 594 (777)
T ss_pred HHHhhccccccHHHHHHHhccCchhhHHHHHHHhhhhhHHHHHhccCCHHHHHHHHhcCccccchHHHHHHhhhHhhhcc
Confidence 9999999999999999999985554 559999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhcCHHHHHHHHHHHhChhhHHHhhcCcChHHHHHHHHhcCCcHHHHHHHHHHHHh-hHHHHhhCCchH
Q 048735 481 KCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVD-NSPFLQSHMYGK 559 (579)
Q Consensus 481 k~GS~VVEk~L~~a~~~~r~~Ii~eL~~~~~l~~L~~d~~GnyVVQklL~~~~~~~~re~Ll~~L~~-~l~~L~~~~~G~ 559 (579)
+|||+||++|++.+..++.+.++++|.. ....|+.|+|||||||++|+.+.. ..++.|+..+.. ++.+|.+++||+
T Consensus 595 r~Gs~vvq~~le~~~~~~~~~~~~~Ii~--~~~~L~~dq~GNyvvq~il~~g~~-~~k~~i~~~~l~~~v~elS~~kfaS 671 (777)
T COG5099 595 RYGSRVVQRCLENCNSEDKENLVEEIIS--NSKYLSQDQYGNYVVQHILDNGAE-PNKERIIIKLLSKRVVELSTHKFAS 671 (777)
T ss_pred ccccHHHHHHHHhccHhHHHHHHHHHHH--HHHhhccCCcchhhhhHHhhcCCC-cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 899999999999999999999998 899999999988 999999999999
Q ss_pred HHHHHHHhccccccc
Q 048735 560 NVLAKVRGNKNRFHN 574 (579)
Q Consensus 560 ~Vv~kl~~~~~~~~~ 574 (579)
.||+|+.+.+....+
T Consensus 672 nvVeK~i~~~~~~~~ 686 (777)
T COG5099 672 NVVEKCIKYASDSFK 686 (777)
T ss_pred HHHHHHHhcCCcchH
Confidence 999999999887664
No 8
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.3e-29 Score=272.27 Aligned_cols=273 Identities=21% Similarity=0.303 Sum_probs=254.0
Q ss_pred HHHHhhhHHHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHH---HHHHHhcCcchhHHHHHHHhhcc-HHHHHHHHHHH
Q 048735 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVID---DLHELMRHQSANHLIQKLIGVLN-EEQMTKLILSV 315 (579)
Q Consensus 240 L~ei~Gki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~---~~~~L~~D~~Gs~VIQkLle~~s-~eq~~~I~~~l 315 (579)
+.++...+.+|+.|+.|.-++|++++.|++|++..|...+.. .|..++++.+|+.++|+|++... .+|...+++.+
T Consensus 248 f~~~~~~~~~Lm~d~fGny~vqkl~~~~~~eq~~~i~~~lts~p~~fv~i~~N~~GTr~iQkl~~~~~~~dqI~~~~~ai 327 (536)
T KOG2049|consen 248 FLETIQDVPELMEDPFGNYLVQKLLEVCDEEQLTKIVSLLTSDPRLFVEICTNMYGTRAVQKLLGKSDSVDQISLFLDAI 327 (536)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHhhCHHHHHHHHHHHhcCccceeEeeecCchhHHHHHHHhccccHHHHHHHHHHH
Confidence 779999999999999999999999999999999999999987 58999999999999999999885 56788889999
Q ss_pred HhhchhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCCCchhhhhhccccCccchHHHH
Q 048735 316 VSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLL 395 (579)
Q Consensus 316 ~~~~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~~~~~~~Ii 395 (579)
. +.+..|++|.||.||||+++..+ .+++.+.+.+.+..+...++.|++|+.|||+||.....+.++.++
T Consensus 328 ~---~~fl~L~~D~~g~~Viq~cl~~f--------~~~~~~~l~e~i~~~c~~iA~~~hGCcvLq~cl~~~~~~~rd~Lv 396 (536)
T KOG2049|consen 328 K---PNFLHLIKDKNGNHVIQRCLRVF--------SKEKNEFLYEAILRYCLDLATDQHGCCVLQKCLDYSRGEQRDRLV 396 (536)
T ss_pred H---hhhHHhhhhcchhHHHHHHHHhc--------CchhhhHHHHHHHHHHHHHHHhccccchhHHHhcchhHHHHHHHH
Confidence 9 99999999999999999999999 789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHhhccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCChhhHHHHHHHHHH--h
Q 048735 396 EEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAG--R 473 (579)
Q Consensus 396 ~~l~~~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~~~r~~Ii~~L~g--~ 473 (579)
+++..+...|+.++||.+|||.+++.-.......|+..+.++..+|+..+|||||||++|+..... +..|+.+|++ .
T Consensus 397 ~~i~~naL~Ls~d~~GNyvVQyvl~L~~~~~t~~i~~~L~g~~veLS~qKfgS~vVEk~L~~~~~~-~~~iV~ell~~~~ 475 (536)
T KOG2049|consen 397 EEISRNALLLSNDPYGNYVVQYVLELNDPSCTVNIAEKLRGHYVELSFQKFGSHVVEKLLKVRESS-RAQIVLELLSCDE 475 (536)
T ss_pred HHHHHHhHhhhcCccccchhhhhhhhcCcchHHHHHHhhhhHHHHHHHHhhccHHHHHHHhcCcch-hhHHHHHHHcccc
Confidence 999999999999999999999999998888889999999999999999999999999999986665 3677777777 9
Q ss_pred HHhhcCCcchHHHHHHHHhhcCH----HHHHHHHHHHhChhhHHHhhcCcChHHHHH
Q 048735 474 YFALSLGKCSSNVVQKCLLESGE----EQSTGIINEIIRHPEIVQLILDPYGNYVIQ 526 (579)
Q Consensus 474 ~~~Ls~~k~GS~VVEk~L~~a~~----~~r~~Ii~eL~~~~~l~~L~~d~~GnyVVQ 526 (579)
+..|+.|+||.+||+++|..+.. ..+..++..+.. .+..|-..++|+.+..
T Consensus 476 ~~~Ll~D~ygNyViq~AL~vtk~~~~~~~~~~lv~~~~~--~~~~lr~~p~~~~~~~ 530 (536)
T KOG2049|consen 476 LDRLLRDPYGNYVIQTALRVTKVKLREDLFGLLVQKLMP--RIRLLRNNPGGNIALI 530 (536)
T ss_pred HHHHhhCccchHHHHHHHHHhhhcccchhhHHHHHHHhh--hhHHhhcCcccceeee
Confidence 99999999999999999999886 677888888887 7888888899987643
No 9
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.2e-28 Score=259.28 Aligned_cols=332 Identities=16% Similarity=0.235 Sum_probs=268.9
Q ss_pred HHHHhhhHHHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhcc---------------
Q 048735 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLN--------------- 304 (579)
Q Consensus 240 L~ei~Gki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s--------------- 304 (579)
++|+.|+++++|++|.||.++|+++..++..+...+|.++.++++.+++|+||+||+|++++...
T Consensus 94 ~ee~~grel~l~tnqi~Sk~le~l~~f~d~~ql~~ff~~~~g~lr~i~~~r~gshVle~~L~~~a~~vg~e~~~~s~dea 173 (650)
T KOG2188|consen 94 FEEVYGRELDLATNQIGSKVLEDLLGFSDSRQLCDFFSALNGVLRSIAQHRFGSHVLESALEKLAALVGQEAALLSEDEA 173 (650)
T ss_pred HHHhccceeehhccchhHHHHHHHhccCCchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999871
Q ss_pred -----------HHHHHHHHHHHHhhchhhh-hhhccccCCHHHHHHHHhcCCCC----------------cc--------
Q 048735 305 -----------EEQMTKLILSVVSSQQRLL-RICDDLSGSRVMQKLLDAGEYPT----------------RQ-------- 348 (579)
Q Consensus 305 -----------~eq~~~I~~~l~~~~g~~~-~La~d~~GsrVLQklLe~~~~~~----------------~~-------- 348 (579)
++....+++++. +++. .|+.+.+|+||+++++-.+.+.. +.
T Consensus 174 ~~~ke~p~~t~e~~~~~m~nei~---~~~~~~l~~~~~gshv~rt~~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (650)
T KOG2188|consen 174 AVEKEGPFVTCENLLLLMLNEIS---PHVLKTLMELIFGSHVLRTILLLLFSMCPIAESEHKLALRKAAHRGMDDWDAVT 250 (650)
T ss_pred cccccCcccccchHHHHHHHHhh---HHHHHHHHHHHHhHHHHHHHHHHHccCcchhhhHHHHHHHHHhhccccchhhhh
Confidence 244556778888 8888 99999999999999998774310 00
Q ss_pred ---------------------C-CC---H-HH----HH--------HHHHHHH---------------------------
Q 048735 349 ---------------------Q-LT---Q-EQ----QS--------LLVSALK--------------------------- 363 (579)
Q Consensus 349 ---------------------~-~~---~-eq----~~--------~l~~eL~--------------------------- 363 (579)
+ +. . +- ++ .++....
T Consensus 251 ~~pqsFp~~l~~~i~~~l~~~~~~s~~~~~~~k~~~vDk~~s~v~q~~i~l~~~~~~~~~~~~~~~lv~~~~~~~e~d~~ 330 (650)
T KOG2188|consen 251 TPPQSFPQRLIVWICTGLSALQDVSESKKRDLKGYEVDKSSSNVLQKAIRLAFDENKNDQFMESPRLVTKFQLFNEKDGL 330 (650)
T ss_pred cChhhccHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhhhHHHhhhhccccCcc
Confidence 0 00 0 00 00 0000000
Q ss_pred -----hhHhHhccCCCCchhhhhhccccCccchHHHHHHHHHhhHhhccCCCchhHHHHhhhhCC-HHHHHHHHHHHHHH
Q 048735 364 -----NITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQ-EEQKARLIADVVAN 437 (579)
Q Consensus 364 -----~~i~~L~~D~~GnhVlQklLe~~~~~~~~~Ii~~l~~~l~~La~~k~Gs~VVQklLe~~~-~~~~~~Lv~~L~~~ 437 (579)
+-...+..|+.|++++..+++.++++........+.+++.+||.|+.++.+||++|++.. .++...+++++.++
T Consensus 331 ~~kE~~~~k~~l~d~tgSrllE~Imeva~~~~~~lf~~~f~~rl~~La~~p~aNF~lQrli~h~~~~e~v~~v~eeL~P~ 410 (650)
T KOG2188|consen 331 WGKERSFLKELLSDQTGSRLLEVIMEVASESLLSLFYIVFCGRLDELAVHPIANFPLQRLINHLTSLEDVGSVIEELAPK 410 (650)
T ss_pred cccccHHHHHHHhcCcccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHhccCHHHHHHHHHHHhHH
Confidence 003356679999999999999999998877888889999999999999999999999996 88888888888876
Q ss_pred HHHHhh-----------------------------------------------------------------CcchhHHHH
Q 048735 438 AYVLSE-----------------------------------------------------------------HSYGNYVVQ 452 (579)
Q Consensus 438 l~~La~-----------------------------------------------------------------D~~GnyVIQ 452 (579)
+..|.. ++.|+.++|
T Consensus 411 ~~~LL~~g~~gVv~sLia~~~rl~s~q~~~l~~Li~a~~~~~~~~k~il~~lL~~~~~~g~~~~~~~t~~~h~~ga~lle 490 (650)
T KOG2188|consen 411 LSSLLEQGNSGVVASLIAASARLGSYQDKMLQQLIQAFHAASESKKNILPCLLFSLTLFGCVGEWFLTEKFHQKGAVLLE 490 (650)
T ss_pred HHHHHHcCCchHhHHHHHHHHhhchhHHHHHHHHHHHHhcCChhhcchHHHHHHHhhhcccccccccHHHHhhchhHHHH
Confidence 444332 335666667
Q ss_pred HHHhcCChhh---HHHHHHHHHHhHHhhcCCcchHHHHHHHHhh--cCHHHHHHHHHHHhChhhHHHhhcCcChHHHHHH
Q 048735 453 YILGLKIPQV---TADVVAQLAGRYFALSLGKCSSNVVQKCLLE--SGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQT 527 (579)
Q Consensus 453 ~iLe~~~~~~---r~~Ii~~L~g~~~~Ls~~k~GS~VVEk~L~~--a~~~~r~~Ii~eL~~~~~l~~L~~d~~GnyVVQk 527 (579)
.++....+.. .+.+.+....++.+++++++||||||.+|.. .+++.+++++..|-+ .+.+|+.+.+|++|+.+
T Consensus 491 ~lv~f~k~~i~~litsll~L~~eqi~e~~~~~~~ShlIeavL~S~~l~~~~~~kLi~~l~g--~~~~La~~~~GSrv~eK 568 (650)
T KOG2188|consen 491 ELVNFSKTHIQTLITSLLSLSEEQILEMSCNGVGSHLIEAVLASKDLGEKIKEKLINILDG--SFVTLALSTFGSRVFEK 568 (650)
T ss_pred HHHhhchhhhHHHHHHHHhhhHHHHHHHhcCCchHHHHHHHHHhccccHHHHHHHHHHhhc--cchheeecCcccHHHHH
Confidence 7766655532 3444555667899999999999999999997 778899999999998 99999999999999999
Q ss_pred HHhcCCcHHHHHHHHHHHHhhHHHHhhCCchHHHHHHHHhccccccccccCC
Q 048735 528 AWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKVRGNKNRFHNRVAMW 579 (579)
Q Consensus 528 lL~~~~~~~~re~Ll~~L~~~l~~L~~~~~G~~Vv~kl~~~~~~~~~r~~~w 579 (579)
||+.+.. .+|++|+++|..--.+++.++||+.|+.+..- .-|.++.+-|
T Consensus 569 ~wea~~~-~~k~rIakeL~~~~~~vk~s~~gk~v~~~~~l--~ly~~~p~~W 617 (650)
T KOG2188|consen 569 CWEATDV-LYKERIAKELVGIHNDVKSSKYGKFVMLNWDL--ELYRRSPDDW 617 (650)
T ss_pred HHHHhhH-HHHHHHHHHHHhhccccccCcchHHHHHhccH--HHHhcCHHHH
Confidence 9999998 99999999999999999999999999987642 2344444444
No 10
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.4e-28 Score=259.91 Aligned_cols=284 Identities=17% Similarity=0.241 Sum_probs=243.7
Q ss_pred HHHHhhhHHHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHHHHHhhc
Q 048735 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQ 319 (579)
Q Consensus 240 L~ei~Gki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~l~~~~ 319 (579)
++-++|++.+++.-++.|||||.+++++++++|+.||+|+.|.+++||+++||-|++||++.+++..|+..|++++.
T Consensus 159 ~~likg~i~~lv~aHDtSRViQt~Vky~s~~~r~~if~eL~p~~v~l~kskY~k~~v~KmLkyGsk~q~a~iI~sl~--- 235 (652)
T KOG2050|consen 159 YKLIKGKISKLVFAHDTSRVIQTCVKYGSEAQREQIFEELLPFFVELAKSKYAKFFVQKMLKYGSKAQKAKIINSLR--- 235 (652)
T ss_pred HHHHhhhHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHh---
Confidence 67779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCCCchhhhhhccccCccchHHHHHHHH
Q 048735 320 QRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIA 399 (579)
Q Consensus 320 g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~~~~~~~Ii~~l~ 399 (579)
|++..|+.|+.|+.|+..++... + +.+|+..++.|+.+....+.+|.+--++ .++++.. ++.+..|...+.
T Consensus 236 Ghv~kLlRH~eaa~Vve~ay~~~--A-----~l~Qr~~li~EfYG~efqlfK~sn~~Tl-~kil~~~-pekk~~I~~~l~ 306 (652)
T KOG2050|consen 236 GHVVKLLRHREAAYVVEYAYNDF--A-----TLEQRQYLIQEFYGDEFQLFKDSNDKTL-DKILAEA-PEKKASILRHLK 306 (652)
T ss_pred hhHHHHHhhhHHHHHHHHHHHhh--c-----cHHHHHHHHHHHhhHHHHHHhccCcccH-HHHHHhC-hHhHHHHHHHHH
Confidence 99999999999999999999987 6 8999999999999999999999443333 3333333 566666666555
Q ss_pred HhhHhhccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCChhhHHHHHHHHHHhHHhhcC
Q 048735 400 ENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSL 479 (579)
Q Consensus 400 ~~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~~~r~~Ii~~L~g~~~~Ls~ 479 (579)
..+..++ +-.. ..-.|+..+ .--.+..++++.+.++++.+...+.+|.+
T Consensus 307 ~~I~~v~-------------eKg~--v~~tivHk~----------------mlEy~~~ade~e~~e~l~ll~elv~e~vH 355 (652)
T KOG2050|consen 307 AIITPVA-------------EKGS--VDHTIVHKL----------------MLEYLTIADEEEKSELLELLKELVPEMVH 355 (652)
T ss_pred HHhHHHh-------------hcch--hHHHHHHHH----------------HHHHHHhCCHHHHHHHHHHHHHHHHHHhc
Confidence 4443322 1110 011222222 22234567888899999999999999999
Q ss_pred CcchHHHHHHHHhhcCHHHHHHHHHHHhChhhHHHhhcCcChHHHHHHHHhcCCcHH-HHHHHHHHHHhhHHHHhhCCch
Q 048735 480 GKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRR-IRQTLYDLVVDNSPFLQSHMYG 558 (579)
Q Consensus 480 ~k~GS~VVEk~L~~a~~~~r~~Ii~eL~~~~~l~~L~~d~~GnyVVQklL~~~~~~~-~re~Ll~~L~~~l~~L~~~~~G 558 (579)
++-||+|.-+|+.++++++|+.|++.+.. ++..++.|+||+.|+-.+|++.+++. .++.|++++...+.+|..++||
T Consensus 356 T~dGS~vAm~li~~a~aKeRK~IiK~~K~--h~~K~A~~~yGh~vlia~ldc~DDT~l~kk~i~~e~~~el~~li~Dk~G 433 (652)
T KOG2050|consen 356 TRDGSRVAMKLIWHATAKERKLIIKNMKE--HVEKIANDEYGHLVLIALLDCTDDTKLLKKLIYDELKSELKSLISDKYG 433 (652)
T ss_pred CCchHHHHHHHHhhCCHHHHHHHHHHHHH--HHHHHHhhccCceehhhhhcccchHHHHHHHHHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999 99999999999999999999999853 7889999999999999999999
Q ss_pred HHHHHHHHhc
Q 048735 559 KNVLAKVRGN 568 (579)
Q Consensus 559 ~~Vv~kl~~~ 568 (579)
++|+.+++..
T Consensus 434 rrv~lyll~p 443 (652)
T KOG2050|consen 434 RRVILYLLAP 443 (652)
T ss_pred hhhhhhhccC
Confidence 9999999877
No 11
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=5.4e-19 Score=190.76 Aligned_cols=263 Identities=18% Similarity=0.220 Sum_probs=195.0
Q ss_pred hHHHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhcc-HHHHHHHHHHHHhhchhhhh
Q 048735 246 RIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLN-EEQMTKLILSVVSSQQRLLR 324 (579)
Q Consensus 246 ki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s-~eq~~~I~~~l~~~~g~~~~ 324 (579)
...++-.|+.|||+|+++++.+.+..+..+...+.+.+.+|+.|+++||+||+||++.. .++...+++++. +++.+
T Consensus 337 ~~k~~l~d~tgSrllE~Imeva~~~~~~lf~~~f~~rl~~La~~p~aNF~lQrli~h~~~~e~v~~v~eeL~---P~~~~ 413 (650)
T KOG2188|consen 337 FLKELLSDQTGSRLLEVIMEVASESLLSLFYIVFCGRLDELAVHPIANFPLQRLINHLTSLEDVGSVIEELA---PKLSS 413 (650)
T ss_pred HHHHHHhcCcccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHhccCHHHHHHHHHHHh---HHHHH
Confidence 33455568999999999999999999988888888999999999999999999999997 889999999999 99999
Q ss_pred hhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCCCchhhhhhccccCccchHHHHHHHHHhhHh
Q 048735 325 ICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLD 404 (579)
Q Consensus 325 La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~~~~~~~Ii~~l~~~l~~ 404 (579)
|..+.+.. |+..++.++ . + .......+++.|...+..--.+. -|-+. .+|-....-. ...+....
T Consensus 414 LL~~g~~g-Vv~sLia~~--~---r-l~s~q~~~l~~Li~a~~~~~~~~-k~il~-~lL~~~~~~g------~~~~~~~t 478 (650)
T KOG2188|consen 414 LLEQGNSG-VVASLIAAS--A---R-LGSYQDKMLQQLIQAFHAASESK-KNILP-CLLFSLTLFG------CVGEWFLT 478 (650)
T ss_pred HHHcCCch-HhHHHHHHH--H---h-hchhHHHHHHHHHHHHhcCChhh-cchHH-HHHHHhhhcc------cccccccH
Confidence 98777654 666666655 1 1 12333344444444332211111 01100 1111000000 00001111
Q ss_pred hccCCCchhHHHHhhhhCCHH---HHHHHHHHHHHHHHHHhhCcchhHHHHHHHhc--CChhhHHHHHHHHHHhHHhhcC
Q 048735 405 LATDRSGCCLLQYCIPLAQEE---QKARLIADVVANAYVLSEHSYGNYVVQYILGL--KIPQVTADVVAQLAGRYFALSL 479 (579)
Q Consensus 405 La~~k~Gs~VVQklLe~~~~~---~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~--~~~~~r~~Ii~~L~g~~~~Ls~ 479 (579)
--.|..||.++|.++.+..+. ....+.+-..+.+.+++.+.+|++||+++|.. .++..+++++..|.+.+++|+.
T Consensus 479 ~~~h~~ga~lle~lv~f~k~~i~~litsll~L~~eqi~e~~~~~~~ShlIeavL~S~~l~~~~~~kLi~~l~g~~~~La~ 558 (650)
T KOG2188|consen 479 EKFHQKGAVLLEELVNFSKTHIQTLITSLLSLSEEQILEMSCNGVGSHLIEAVLASKDLGEKIKEKLINILDGSFVTLAL 558 (650)
T ss_pred HHHhhchhHHHHHHHhhchhhhHHHHHHHHhhhHHHHHHHhcCCchHHHHHHHHHhccccHHHHHHHHHHhhccchheee
Confidence 123668999999999988552 24555555567899999999999999999998 6677899999999999999999
Q ss_pred CcchHHHHHHHHhhcCHHHHHHHHHHHhChhhHHHhhcCcChHHHHHHH
Q 048735 480 GKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTA 528 (579)
Q Consensus 480 ~k~GS~VVEk~L~~a~~~~r~~Ii~eL~~~~~l~~L~~d~~GnyVVQkl 528 (579)
+.+||||+||||+.+....|..|+.+|++ .-..+-.++||.||..++
T Consensus 559 ~~~GSrv~eK~wea~~~~~k~rIakeL~~--~~~~vk~s~~gk~v~~~~ 605 (650)
T KOG2188|consen 559 STFGSRVFEKCWEATDVLYKERIAKELVG--IHNDVKSSKYGKFVMLNW 605 (650)
T ss_pred cCcccHHHHHHHHHhhHHHHHHHHHHHHh--hccccccCcchHHHHHhc
Confidence 99999999999999999999999999999 677788999999998875
No 12
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=3.6e-18 Score=182.72 Aligned_cols=245 Identities=18% Similarity=0.225 Sum_probs=211.6
Q ss_pred HHHHhhhHHHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhh-ccHHHHHHHHHHHHhh
Q 048735 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGV-LNEEQMTKLILSVVSS 318 (579)
Q Consensus 240 L~ei~Gki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~-~s~eq~~~I~~~l~~~ 318 (579)
++|+.|.+++||++.||-.++|++|++++.+++..|++++.+|++.|+.|+.|++|++-++.- ++.+||..|+.++.
T Consensus 195 f~eL~p~~v~l~kskY~k~~v~KmLkyGsk~q~a~iI~sl~Ghv~kLlRH~eaa~Vve~ay~~~A~l~Qr~~li~EfY-- 272 (652)
T KOG2050|consen 195 FEELLPFFVELAKSKYAKFFVQKMLKYGSKAQKAKIINSLRGHVVKLLRHREAAYVVEYAYNDFATLEQRQYLIQEFY-- 272 (652)
T ss_pred HHHHhHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHh--
Confidence 899999999999999999999999999999999999999999999999999999999988754 88999999999999
Q ss_pred chhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCCCch-----hhhhhccccCccchHH
Q 048735 319 QQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNH-----VIKRCLQKFPPDYTKD 393 (579)
Q Consensus 319 ~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~Gnh-----VlQklLe~~~~~~~~~ 393 (579)
|.-..+..+ .--..|.++++.. ++.+..|++.+...+-..+.-..=.| ++...+..++++.+..
T Consensus 273 -G~efqlfK~-sn~~Tl~kil~~~---------pekk~~I~~~l~~~I~~v~eKg~v~~tivHk~mlEy~~~ade~e~~e 341 (652)
T KOG2050|consen 273 -GDEFQLFKD-SNDKTLDKILAEA---------PEKKASILRHLKAIITPVAEKGSVDHTIVHKLMLEYLTIADEEEKSE 341 (652)
T ss_pred -hHHHHHHhc-cCcccHHHHHHhC---------hHhHHHHHHHHHHHhHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999988 4445677787776 68888888877776554433222112 3445566678888889
Q ss_pred HHHHHHHhhHhhccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCChhh--HHHHHHHHH
Q 048735 394 LLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQV--TADVVAQLA 471 (579)
Q Consensus 394 Ii~~l~~~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~~~--r~~Ii~~L~ 471 (579)
+++.+.+.+.++...+-|++|--.||.+++.+.|..|+..+.+++..++.|+||+.|+-.+|++.++.. +..|++.+.
T Consensus 342 ~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK~IiK~~K~h~~K~A~~~yGh~vlia~ldc~DDT~l~kk~i~~e~~ 421 (652)
T KOG2050|consen 342 LLELLKELVPEMVHTRDGSRVAMKLIWHATAKERKLIIKNMKEHVEKIANDEYGHLVLIALLDCTDDTKLLKKLIYDELK 421 (652)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhccCceehhhhhcccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999876544 777888999
Q ss_pred HhHHhhcCCcchHHHHHHHHhhcCHH
Q 048735 472 GRYFALSLGKCSSNVVQKCLLESGEE 497 (579)
Q Consensus 472 g~~~~Ls~~k~GS~VVEk~L~~a~~~ 497 (579)
+.+..+..|+||.+|++-++.-.+.+
T Consensus 422 ~el~~li~Dk~Grrv~lyll~p~D~~ 447 (652)
T KOG2050|consen 422 SELKSLISDKYGRRVILYLLAPRDGR 447 (652)
T ss_pred HHHHHHhccchhhhhhhhhccCCccc
Confidence 99999999999999999988865544
No 13
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=99.72 E-value=7.4e-17 Score=177.50 Aligned_cols=288 Identities=17% Similarity=0.209 Sum_probs=236.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHHHHHhhchhhhhhhccccCCHHHHHHHHhcCCCCcc
Q 048735 269 PIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQ 348 (579)
Q Consensus 269 ~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~l~~~~g~~~~La~d~~GsrVLQklLe~~~~~~~~ 348 (579)
..+++.+.-++.++..++..|=.||-|+||++|++++..+..+..... ..+..+..|++|+++.||+++.+ -
T Consensus 534 ~pEied~ai~mLDe~~elsSdylGNtVvqkfFe~sS~~ik~aml~r~s---~ylts~gvHknGtw~~qk~ik~a--~--- 605 (1007)
T KOG4574|consen 534 APEIEDLAILMLDELPELSSDYLGNTVVQKFFELSSDIIKDAMLRRGS---KYLTSMGVHKNGTWACQKIIKMA--F--- 605 (1007)
T ss_pred chhHHHHHHHHhccCCcchhhhhcchhhHHHHhhccHHHHHHHHhhhh---hhhhhccccccchHHHHHHHHHh--h---
Confidence 345666777888889999999999999999999999999999999888 89999999999999999999998 6
Q ss_pred CCCHHHHHHHHHHHHhhHhHhccCCCCchhhhhhccccCccchHHHHHHHHHhhHhhccCCCchhHHHHhhhhC--CHHH
Q 048735 349 QLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLA--QEEQ 426 (579)
Q Consensus 349 ~~~~eq~~~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~~~~~~~Ii~~l~~~l~~La~~k~Gs~VVQklLe~~--~~~~ 426 (579)
++.+...++..+.+....+..|++||||+|.+|...- ....+|++.+..++.++...+||++.+.+|++.. ..++
T Consensus 606 --te~qik~iv~g~dpyc~~l~~dqfgnyvaqd~LkF~f-p~nsFVfE~v~s~~~~ivQsrfGsravrAcle~lNa~~e~ 682 (1007)
T KOG4574|consen 606 --TERQIKLIVRGVDPYCTPLLNDQFGNYVAQDSLKFGF-PWNSFVFESVFSHFWDIVQSRFGSRAVRACLEALNANTED 682 (1007)
T ss_pred --chhhhheeeeccCcchhhHHHHhhcceeeeeehhccC-ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCchh
Confidence 7888999999999999999999999999999999873 4567889999999999999999999999999865 2233
Q ss_pred HHHHHHH-HHHHHHHHhhCcchhHHHHHHHhcCChhhH-HHHHHHHHHhHHhhcCCcchHHHHHHHHhhcCHHH-HHHHH
Q 048735 427 KARLIAD-VVANAYVLSEHSYGNYVVQYILGLKIPQVT-ADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQ-STGII 503 (579)
Q Consensus 427 ~~~Lv~~-L~~~l~~La~D~~GnyVIQ~iLe~~~~~~r-~~Ii~~L~g~~~~Ls~~k~GS~VVEk~L~~a~~~~-r~~Ii 503 (579)
....+.. +......++.+..|-..|..+|+.+....+ ..++..+.++++++|.|+-|+-+|.|++..+.+.. |++|+
T Consensus 683 qsl~~~s~iIs~ss~latnsng~llvtw~lDns~~~nrh~~l~~~lt~el~~lC~h~Lgsttv~Kl~n~~qepvs~ekii 762 (1007)
T KOG4574|consen 683 QSLVRESCIISKSSYLATNSNGLLLVTWLLDNSSLPNRHTILAHGLTKELVMLCFHKLGSTTVLKLLNLRQEPVSREKII 762 (1007)
T ss_pred hhhhhhhhhhhchhhhhhcCccceeeeeecccccccchhhHHhhhhhhccchhhhhhccchhhhhhhhcCCChHHHHHHH
Confidence 2222222 334467789999999999999997764443 34456788999999999999999999999887665 99999
Q ss_pred HHHhCh----------------------------hhHHHhhcCcChHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHhhC
Q 048735 504 NEIIRH----------------------------PEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQSH 555 (579)
Q Consensus 504 ~eL~~~----------------------------~~l~~L~~d~~GnyVVQklL~~~~~~~~re~Ll~~L~~~l~~L~~~ 555 (579)
+.|+.. |-++....|+|+++|.|.|+........| +++|...+.-++..
T Consensus 763 ~hlf~~~n~kd~~lt~Vl~~~~~gpmfiikvi~~p~iel~f~dQf~kvvrq~il~~~a~~nar---v~~LleevgliSas 839 (1007)
T KOG4574|consen 763 EHLFHLRNFKDSALTEVLTEANYGPMFIIKVITKPTIELAFRDQFIKVVRQVILNSPAVSNAR---VQRLLEEVGLISAS 839 (1007)
T ss_pred HHHhhccccccchhhhhhhhhccccceeeeeeccccchHHHHHHHHHHHHHHHHhcCCccHHH---HHHHHHHHhhhccc
Confidence 999841 24667778999999999999987651111 25555666667888
Q ss_pred CchHHHHHHHHhccc
Q 048735 556 MYGKNVLAKVRGNKN 570 (579)
Q Consensus 556 ~~G~~Vv~kl~~~~~ 570 (579)
++|++-+..+.+...
T Consensus 840 ksgs~s~q~~~sss~ 854 (1007)
T KOG4574|consen 840 KSGSQSIQMHISSSK 854 (1007)
T ss_pred cchhHHHHhhhccCC
Confidence 999998777765543
No 14
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=99.22 E-value=3.6e-12 Score=141.11 Aligned_cols=199 Identities=20% Similarity=0.213 Sum_probs=118.9
Q ss_pred hhccCCCCCcccHHHHhhhH----HHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhc
Q 048735 228 ARHHHHRTSYSSIEELRGRI----ILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVL 303 (579)
Q Consensus 228 ~~~~~~~~~~~~L~ei~Gki----~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~ 303 (579)
....++.-.+.+++++.+-+ .++..|-.|.-++|++++.+.+--++..+.....++.....|+||.+.+||+|+++
T Consensus 525 ksedsn~~S~pEied~ai~mLDe~~elsSdylGNtVvqkfFe~sS~~ik~aml~r~s~ylts~gvHknGtw~~qk~ik~a 604 (1007)
T KOG4574|consen 525 KSEDSNRLSAPEIEDLAILMLDELPELSSDYLGNTVVQKFFELSSDIIKDAMLRRGSKYLTSMGVHKNGTWACQKIIKMA 604 (1007)
T ss_pred hhcccCcccchhHHHHHHHHhccCCcchhhhhcchhhHHHHhhccHHHHHHHHhhhhhhhhhccccccchHHHHHHHHHh
Confidence 44455666666666664443 46788888888888888888888888888888888888888888888888888887
Q ss_pred c-HHHHHHHH-----------------------------------HHHHhhchhhhhhhccccCCHHHHHHHHhcCCCCc
Q 048735 304 N-EEQMTKLI-----------------------------------LSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTR 347 (579)
Q Consensus 304 s-~eq~~~I~-----------------------------------~~l~~~~g~~~~La~d~~GsrVLQklLe~~~~~~~ 347 (579)
. +.|.+.++ +.+. .++.++...+||++.+.++|+.....
T Consensus 605 ~te~qik~iv~g~dpyc~~l~~dqfgnyvaqd~LkF~fp~nsFVfE~v~---s~~~~ivQsrfGsravrAcle~lNa~-- 679 (1007)
T KOG4574|consen 605 FTERQIKLIVRGVDPYCTPLLNDQFGNYVAQDSLKFGFPWNSFVFESVF---SHFWDIVQSRFGSRAVRACLEALNAN-- 679 (1007)
T ss_pred hchhhhheeeeccCcchhhHHHHhhcceeeeeehhccCccchHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHhccC--
Confidence 4 33444433 4444 45555555555555555555554222
Q ss_pred cCCCHHHHHHHHH-HHHhhHhHhccCCCCchhhhhhccccCccchH-HHHHHHHHhhHhhccCCCchhHHHHhhhhCCHH
Q 048735 348 QQLTQEQQSLLVS-ALKNITVSLSKSPHGNHVIKRCLQKFPPDYTK-DLLEEIAENCLDLATDRSGCCLLQYCIPLAQEE 425 (579)
Q Consensus 348 ~~~~~eq~~~l~~-eL~~~i~~L~~D~~GnhVlQklLe~~~~~~~~-~Ii~~l~~~l~~La~~k~Gs~VVQklLe~~~~~ 425 (579)
.++....++ .+......+..+.+|-..|.++++...-..+. .++..+.+++.++|+|+.|+.+|+++++.+.++
T Consensus 680 ----~e~qsl~~~s~iIs~ss~latnsng~llvtw~lDns~~~nrh~~l~~~lt~el~~lC~h~Lgsttv~Kl~n~~qep 755 (1007)
T KOG4574|consen 680 ----TEDQSLVRESCIISKSSYLATNSNGLLLVTWLLDNSSLPNRHTILAHGLTKELVMLCFHKLGSTTVLKLLNLRQEP 755 (1007)
T ss_pred ----chhhhhhhhhhhhhchhhhhhcCccceeeeeecccccccchhhHHhhhhhhccchhhhhhccchhhhhhhhcCCCh
Confidence 122221111 11122344555555555555555554322222 234445567777777777777777777776544
Q ss_pred H-HHHHHHHHH
Q 048735 426 Q-KARLIADVV 435 (579)
Q Consensus 426 ~-~~~Lv~~L~ 435 (579)
. ++.|++.|.
T Consensus 756 vs~ekii~hlf 766 (1007)
T KOG4574|consen 756 VSREKIIEHLF 766 (1007)
T ss_pred HHHHHHHHHHh
Confidence 4 555555544
No 15
>PF07990 NABP: Nucleic acid binding protein NABP; InterPro: IPR012940 This domain occurs in some putative nucleic acid binding proteins. One of these proteins has been partially characterised [] and contains two putative phosphorylation sites and a possible dimerisation / leucine zipper domain.
Probab=98.46 E-value=2.4e-07 Score=97.34 Aligned_cols=88 Identities=22% Similarity=0.201 Sum_probs=71.7
Q ss_pred cccCcCCCCCCCCCCCCCCCCCCCCCcccCcc------ccccccCCCCCCCCCCCCCCCCCcCCcccCCCCCCCCcccch
Q 048735 150 SGFDLQSGFEGLNIDGLGLPRPNNLTVQRNLV------AATNRYATTNNASPSYSNLSHGFLSDHHHLGSSTNASSRYNN 223 (579)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (579)
.|.-.+++|||.+..|+||++||++++.+.++ ++|+|...+++++++.+++..|+++|.||.+.+++. .++
T Consensus 289 ~~~~~n~~y~gnp~~G~gm~Y~gsplaspvlPsspvG~gsp~r~~er~~R~~s~mRn~~GG~~GsW~~d~g~~~---d~~ 365 (385)
T PF07990_consen 289 KSGSMNHGYYGNPSYGLGMPYPGSPLASPVLPSSPVGPGSPLRHNERNMRFPSGMRNSSGGSMGSWHSDAGGNM---DEN 365 (385)
T ss_pred cCCCCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCcCCccccccCcccccccccccccccccccccc---ccc
Confidence 34444788999666699999999999999855 468899999999999999999999999999997764 334
Q ss_pred hhhhhh--ccCCCCCcccH
Q 048735 224 FYARAR--HHHHRTSYSSI 240 (579)
Q Consensus 224 ~~~~~~--~~~~~~~~~~L 240 (579)
+.+.|+ +|++|+|.++|
T Consensus 366 ~~sSlLEEFKsNKtr~FEL 384 (385)
T PF07990_consen 366 FASSLLEEFKSNKTRSFEL 384 (385)
T ss_pred chhHHHHHHhcCCccceec
Confidence 444443 79999998876
No 16
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=98.20 E-value=1e-06 Score=61.61 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHH
Q 048735 279 VIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLI 312 (579)
Q Consensus 279 i~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~ 312 (579)
+.+++.+|+.|+|||||||++++.++++++..|+
T Consensus 2 i~~~~~~l~~d~~Gn~VvQk~le~~~~~~~~~il 35 (35)
T PF00806_consen 2 IKGNLVELSKDQYGNYVVQKCLEHASPEQRQLIL 35 (35)
T ss_dssp HTTTHHHHHTSTTHHHHHHHHHHHSSHHHHHHHH
T ss_pred hHHHHHHHHhccccCHHHHHHHHHCCHHHHHhhC
Confidence 5667778888888888888888887777776653
No 17
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=97.88 E-value=1e-05 Score=56.53 Aligned_cols=35 Identities=29% Similarity=0.563 Sum_probs=32.3
Q ss_pred HHhhhHHHHhcCCCccHHHHhhhccCCHHHHHHHH
Q 048735 242 ELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMIL 276 (579)
Q Consensus 242 ei~Gki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~ 276 (579)
++.|++.+||+|++||+++|++|+.+++++++.|+
T Consensus 1 ~i~~~~~~l~~d~~Gn~VvQk~le~~~~~~~~~il 35 (35)
T PF00806_consen 1 EIKGNLVELSKDQYGNYVVQKCLEHASPEQRQLIL 35 (35)
T ss_dssp CHTTTHHHHHTSTTHHHHHHHHHHHSSHHHHHHHH
T ss_pred ChHHHHHHHHhccccCHHHHHHHHHCCHHHHHhhC
Confidence 47899999999999999999999999999988775
No 18
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.79 E-value=1.6e-05 Score=55.04 Aligned_cols=34 Identities=32% Similarity=0.453 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHH
Q 048735 279 VIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLI 312 (579)
Q Consensus 279 i~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~ 312 (579)
+.+++.+||.|+|||+|+|++++.++++++..|+
T Consensus 2 ~~~~~~~l~~~~~g~~viqk~l~~~~~~~~~~i~ 35 (36)
T smart00025 2 IKGHLLELSKDQYGNRVVQKLLEHASESQREQII 35 (36)
T ss_pred chHHHHHHHhcchhhHHHHHHHHHCCHHHHHHhh
Confidence 3456666777777777777777776666655543
No 19
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.60 E-value=3.9e-05 Score=53.08 Aligned_cols=34 Identities=26% Similarity=0.514 Sum_probs=31.6
Q ss_pred HhhhHHHHhcCCCccHHHHhhhccCCHHHHHHHH
Q 048735 243 LRGRIILVAKDEQGCRFLQKKVDERNPIDIEMIL 276 (579)
Q Consensus 243 i~Gki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~ 276 (579)
+++++.+||+|++||+++|++|+.++++++..++
T Consensus 2 ~~~~~~~l~~~~~g~~viqk~l~~~~~~~~~~i~ 35 (36)
T smart00025 2 IKGHLLELSKDQYGNRVVQKLLEHASESQREQII 35 (36)
T ss_pred chHHHHHHHhcchhhHHHHHHHHHCCHHHHHHhh
Confidence 5789999999999999999999999999888776
No 20
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=91.07 E-value=24 Score=37.57 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=51.2
Q ss_pred cchhHHHHHHHhcCChhhHHHHHHHHHHhHHhhcCCcchHHHHHHHHhhc-----CHHHHHHHHHHHhChhhHHHhhcCc
Q 048735 445 SYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLES-----GEEQSTGIINEIIRHPEIVQLILDP 519 (579)
Q Consensus 445 ~~GnyVIQ~iLe~~~~~~r~~Ii~~L~g~~~~Ls~~k~GS~VVEk~L~~a-----~~~~r~~Ii~eL~~~~~l~~L~~d~ 519 (579)
.-|-..+-.||...+....+.|++.|...=.+ .+-.|-++++.+. ++..+..|++++-. ....++...
T Consensus 201 ~~g~~~~a~Iln~~~~~~~~~il~~L~~~d~~-----~a~~Ir~~mF~Fedl~~l~~~~l~~ll~~v~~--~~L~~ALkg 273 (339)
T PRK05686 201 MGGVKTVAEILNNLDRQTEKTILESLEEEDPE-----LAEKIKDLMFVFEDLVDLDDRSIQRLLREVDN--DVLALALKG 273 (339)
T ss_pred cCcHHHHHHHHhcCCchHHHHHHHHHHhhCHH-----HHHHHHHHhcCHHHHhcCCHHHHHHHHHhCCH--HHHHHHHCC
Confidence 44666677777777777677777766543222 2234444444432 33445566666654 455555555
Q ss_pred ChHHHHHHHHhcCCcHHHHHHHHHHH
Q 048735 520 YGNYVIQTAWDVSQGRRIRQTLYDLV 545 (579)
Q Consensus 520 ~GnyVVQklL~~~~~~~~re~Ll~~L 545 (579)
-..-+.+++|...+. ..++.|-+++
T Consensus 274 a~~~~~~~il~nmS~-R~a~~l~eel 298 (339)
T PRK05686 274 ASEELREKFLSNMSK-RAAEMLREDL 298 (339)
T ss_pred CCHHHHHHHHHhcCH-HHHHHHHHHH
Confidence 555566666666665 4444444444
No 21
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=90.58 E-value=26 Score=37.24 Aligned_cols=209 Identities=12% Similarity=0.114 Sum_probs=104.4
Q ss_pred cHHHHHHHHHHHHhhchhhhhhhc-cccCCHHHHHHHHh-cCCCCccCCCHHHHHHHHHHHHhhHhHhccCCCCchhhhh
Q 048735 304 NEEQMTKLILSVVSSQQRLLRICD-DLSGSRVMQKLLDA-GEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKR 381 (579)
Q Consensus 304 s~eq~~~I~~~l~~~~g~~~~La~-d~~GsrVLQklLe~-~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~GnhVlQk 381 (579)
+++....+++++. ..+..-.. ..-|-..+..+++. + .++....+++.+.+.-. ..++..
T Consensus 56 s~~~~~~vL~ef~---~~~~~~~~~~~gg~~~~~~iL~~~l--------~~~~a~~il~~i~~~~~--------~~~fe~ 116 (339)
T PRK05686 56 SPEQVEAVLEEFE---DEFEAGAYILMGGIDYARSLLEKAL--------GEEKADSILERILESLG--------TSGFDF 116 (339)
T ss_pred CHHHHHHHHHHHH---HHHHhcccccCChHHHHHHHHHHHc--------CHHHHHHHHHHHhcccc--------CchHHH
Confidence 4555556666555 44443222 22344457777775 5 56666666666653211 123433
Q ss_pred hccccCccchHHHHHHHHHhhHhhccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCChh
Q 048735 382 CLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQ 461 (579)
Q Consensus 382 lLe~~~~~~~~~Ii~~l~~~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~~ 461 (579)
+. .++++....++.....+...++......-+-.++|...+++.+..++..+.. +....+.
T Consensus 117 L~-~ld~~~l~~lL~~EhpqtiA~iLs~l~~~~aa~vL~~l~~~~~~~v~~ria~------------------l~~v~~~ 177 (339)
T PRK05686 117 LR-KMDPQQLANFIRNEHPQTIALILSYLKPDQAAEILSLLPEELRADVMMRIAT------------------LEGVSPE 177 (339)
T ss_pred Hh-cCCHHHHHHHHHhcCHHHHHHHHhCCCHHHHHHHHHhCCHHHHHHHHHHHHc------------------cCCCCHH
Confidence 33 3355555555555445544444333334444444444444444433333221 1122333
Q ss_pred hHHHHHHHHHHhHHhhc----CCcchHHHHHHHHhhcCHHHHHHHHHHHhChh----------------------hHHHh
Q 048735 462 VTADVVAQLAGRYFALS----LGKCSSNVVQKCLLESGEEQSTGIINEIIRHP----------------------EIVQL 515 (579)
Q Consensus 462 ~r~~Ii~~L~g~~~~Ls----~~k~GS~VVEk~L~~a~~~~r~~Ii~eL~~~~----------------------~l~~L 515 (579)
....|-+.|...+.... ...-|...+-.+|...+....+.|+..|-..+ .-...
T Consensus 178 ~~~~i~~~L~~~l~~~~~~~~~~~~g~~~~a~Iln~~~~~~~~~il~~L~~~d~~~a~~Ir~~mF~Fedl~~l~~~~l~~ 257 (339)
T PRK05686 178 ALKEVEEVLEKKLSSMANADRTKMGGVKTVAEILNNLDRQTEKTILESLEEEDPELAEKIKDLMFVFEDLVDLDDRSIQR 257 (339)
T ss_pred HHHHHHHHHHHHHhhcccccccccCcHHHHHHHHhcCCchHHHHHHHHHHhhCHHHHHHHHHHhcCHHHHhcCCHHHHHH
Confidence 34444444444444321 23455566666666666666666666555421 22333
Q ss_pred hcCcChHHHHHHHHhcCCcHHHHHHHHHHHHhhHHH
Q 048735 516 ILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPF 551 (579)
Q Consensus 516 ~~d~~GnyVVQklL~~~~~~~~re~Ll~~L~~~l~~ 551 (579)
......+-++-.+|+.+++ ..++.|+..|.....+
T Consensus 258 ll~~v~~~~L~~ALkga~~-~~~~~il~nmS~R~a~ 292 (339)
T PRK05686 258 LLREVDNDVLALALKGASE-ELREKFLSNMSKRAAE 292 (339)
T ss_pred HHHhCCHHHHHHHHCCCCH-HHHHHHHHhcCHHHHH
Confidence 3444556666667777766 6777777776554433
No 22
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=89.43 E-value=1.4 Score=41.33 Aligned_cols=60 Identities=17% Similarity=0.270 Sum_probs=38.7
Q ss_pred hHHHhhcCcChHHHHHHHHhcCCcH--HHHHHHHHHHHhh--------HHHHhhCCchHHHHHHHHhccc
Q 048735 511 EIVQLILDPYGNYVIQTAWDVSQGR--RIRQTLYDLVVDN--------SPFLQSHMYGKNVLAKVRGNKN 570 (579)
Q Consensus 511 ~l~~L~~d~~GnyVVQklL~~~~~~--~~re~Ll~~L~~~--------l~~L~~~~~G~~Vv~kl~~~~~ 570 (579)
+...|+.+.+|..||..+|..+.++ ...+.|++.+... -.-+..+++|++++.+|.+.-.
T Consensus 65 ~~~~ll~~~~g~~~i~eiL~~~~gdk~~a~~Aia~~~~~~~~~~~~~~e~H~i~~p~~~r~lK~Liq~~~ 134 (148)
T PF08144_consen 65 NAEELLSSSFGCQFITEILLSATGDKSAALEAIASLAAEPLFPGDIDEEYHLIEHPFGHRMLKKLIQGDK 134 (148)
T ss_pred hHHHHHhcCcccHHHHHHHhccCccHHHHHHHHHHHHhhccCCCCCcCccchhcCchHHHHHHHHHHCCC
Confidence 6777888888888888888877652 1223444433322 1126688889998888876654
No 23
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=87.72 E-value=5.8 Score=37.14 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=44.7
Q ss_pred ccCCCCchhhhhhccccCccchH-HHHHHHHHhhHhhccCCCchhH-HHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcch
Q 048735 370 SKSPHGNHVIKRCLQKFPPDYTK-DLLEEIAENCLDLATDRSGCCL-LQYCIPLAQEEQKARLIADVVANAYVLSEHSYG 447 (579)
Q Consensus 370 ~~D~~GnhVlQklLe~~~~~~~~-~Ii~~l~~~l~~La~~k~Gs~V-VQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~G 447 (579)
+.|+||..|+.-++.-.++.... .+++.+..- ..-.+.+----+ -+.+++... ..|++.+..+...|+.+..|
T Consensus 1 i~dk~gRr~llYLl~~~d~~~f~p~~i~~L~~~-d~~~tSKKd~~~Rr~ELl~~~s----p~Ll~~i~~~~~~ll~~~~g 75 (148)
T PF08144_consen 1 INDKYGRRVLLYLLSPRDPRYFSPEIIKLLKEG-DRNATSKKDPEVRRKELLEAIS----PPLLEAIAENAEELLSSSFG 75 (148)
T ss_pred CCCccCceeeeeeccCCCcccCCHHHHHHHhhh-cccccccCCHHHHHHHHHHHhh----HHHHHHHHHhHHHHHhcCcc
Confidence 46888988888888776554332 222222211 111111111111 112222221 23445555667788888888
Q ss_pred hHHHHHHHhcCCh
Q 048735 448 NYVVQYILGLKIP 460 (579)
Q Consensus 448 nyVIQ~iLe~~~~ 460 (579)
+.||..+|..+..
T Consensus 76 ~~~i~eiL~~~~g 88 (148)
T PF08144_consen 76 CQFITEILLSATG 88 (148)
T ss_pred cHHHHHHHhccCc
Confidence 8888888887654
No 24
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=84.33 E-value=62 Score=34.51 Aligned_cols=51 Identities=8% Similarity=0.062 Sum_probs=29.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhcCcch-hHHHHHHHhhc-cHHHHHHHHHHHH
Q 048735 266 ERNPIDIEMILSEVIDDLHELMRHQSA-NHLIQKLIGVL-NEEQMTKLILSVV 316 (579)
Q Consensus 266 ~~~~e~~~~I~~ei~~~~~~L~~D~~G-s~VIQkLle~~-s~eq~~~I~~~l~ 316 (579)
.-+.++.+.|++++...+..-..-..| .-.++++++.+ .++.-..|++.+.
T Consensus 51 ~v~~~~~~~vl~eF~~~~~~~~~~~~g~~~~~~~~L~~alg~~~a~~il~~i~ 103 (338)
T TIGR00207 51 QIDNQQKDDVLEEFEQIAEAQAYINIGGLDYAREVLEKALGEEKAASILNDLT 103 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCccCChHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 446677777777777666554332323 33556666554 4555666666665
No 25
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=70.91 E-value=1.5e+02 Score=31.58 Aligned_cols=92 Identities=13% Similarity=0.095 Sum_probs=48.2
Q ss_pred chhHHHHHHHhcCChhhHHHHHHHHHHhHHhhcCCcchHHHHHHHHhh-----cCHHHHHHHHHHHhChhhHHHhhcCcC
Q 048735 446 YGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLE-----SGEEQSTGIINEIIRHPEIVQLILDPY 520 (579)
Q Consensus 446 ~GnyVIQ~iLe~~~~~~r~~Ii~~L~g~~~~Ls~~k~GS~VVEk~L~~-----a~~~~r~~Ii~eL~~~~~l~~L~~d~~ 520 (579)
-|--.+..||+..+....+.|++.|...=.++ +..|-++++.+ -+++....|++++-. ....++...-
T Consensus 199 gG~~~~a~ILN~~~~~~~~~il~~L~~~dp~l-----a~~Ir~~mF~Fedl~~ld~~~l~~llrev~~--~~L~~ALkga 271 (338)
T TIGR00207 199 GGVRAVAEIINLMDRKTEKTIITSLEEFDPEL-----AEEIKKEMFVFEDIVDLDDRSIQRVLREVDS--EDLLLALKGA 271 (338)
T ss_pred ChHHHHHHHHHhCCchHHHHHHHHHHHhCHHH-----HHHHHHHccCHHHHhcCCHHHHHHHHHhCCH--HHHHHHHCcC
Confidence 35566777777777776777777665433332 23344444332 233445555555544 4455554444
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHH
Q 048735 521 GNYVIQTAWDVSQGRRIRQTLYDLV 545 (579)
Q Consensus 521 GnyVVQklL~~~~~~~~re~Ll~~L 545 (579)
..-+.+++|...+. ..++.|-+++
T Consensus 272 ~~e~~~~il~nmS~-R~a~~l~ee~ 295 (338)
T TIGR00207 272 EQPLREKFLNNMSQ-RAAEILKEDM 295 (338)
T ss_pred CHHHHHHHHHHhhH-HHHHHHHHHH
Confidence 44555555555554 4444444443
No 26
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=70.39 E-value=1.6e+02 Score=33.25 Aligned_cols=67 Identities=9% Similarity=0.183 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHHHHHhhchhhhhhhccccCCHHHHHHHHh
Q 048735 272 IEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDA 341 (579)
Q Consensus 272 ~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~l~~~~g~~~~La~d~~GsrVLQklLe~ 341 (579)
++.|..-...-+..++..+----++-.++....+..+.+|++.+. ..+..+..++.+-+-+-+++..
T Consensus 45 k~si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c---~~~l~~~e~kmal~el~q~y~e 111 (711)
T COG1747 45 KNSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLC---TRVLEYGESKMALLELLQCYKE 111 (711)
T ss_pred hhhhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHHHHHHHH---HHHHHhcchHHHHHHHHHHHHh
Confidence 445555555667777777777777788888888888899999998 8888888887776555444433
No 27
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=66.06 E-value=1.5e+02 Score=33.50 Aligned_cols=203 Identities=10% Similarity=0.095 Sum_probs=101.7
Q ss_pred CCccHHHHhhhccCCHHHHHHHHHHH----HHHHHHHhcCcchhHHHHHHHhhc----------------cHHHHHHHHH
Q 048735 254 EQGCRFLQKKVDERNPIDIEMILSEV----IDDLHELMRHQSANHLIQKLIGVL----------------NEEQMTKLIL 313 (579)
Q Consensus 254 q~gSr~LQ~lLe~~~~e~~~~I~~ei----~~~~~~L~~D~~Gs~VIQkLle~~----------------s~eq~~~I~~ 313 (579)
++.|.+|+.+|..- ....+..|.++ ...+-.|....||+...|...-.- .+|...+++.
T Consensus 90 q~~s~~Lr~~l~s~-~r~F~E~f~ell~~ae~~l~~mF~~tYg~ly~qn~~~~~dlFtel~~y~~~~~~nlee~l~eff~ 168 (563)
T KOG3821|consen 90 QDSSSVLRFVLASN-ARKFDEFFLELLRNAENSLNAMFSKTYGSLYPQNAELFNDLFTELKLYYVGSNVNLEETLNEFFA 168 (563)
T ss_pred HHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 56788888888742 22233444444 346778899999998888653222 2455566666
Q ss_pred HHHhhchhhhhhhccccCCH-----HHHHHHHhcCCCCccCCCHHHHHHHHHHHHhh--HhHhccCCCCchhhhhhcccc
Q 048735 314 SVVSSQQRLLRICDDLSGSR-----VMQKLLDAGEYPTRQQLTQEQQSLLVSALKNI--TVSLSKSPHGNHVIKRCLQKF 386 (579)
Q Consensus 314 ~l~~~~g~~~~La~d~~Gsr-----VLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~--i~~L~~D~~GnhVlQklLe~~ 386 (579)
.+. +.+..++...|-.. .|++..+.+ .+...+....+..+-+.+... ++.- =.-|+-||.+....-
T Consensus 169 ~Lf---~~~f~~l~~~~~~~~Dy~eCl~~~~~~l--~pFGdiPq~l~~Q~trsl~~ar~Flq~--L~~g~eVv~~~~~v~ 241 (563)
T KOG3821|consen 169 RLF---EVMFSQLNPQYDFTLDYLECLSKARREL--KPFGDIPQKLMLQVTRSLVAARTFLQG--LEVGIEVVSEVDKVP 241 (563)
T ss_pred HHH---HHHHHHhcCCcCCcHHHHHHHHHHHHhc--CCcccchHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHhhcCC
Confidence 666 56665555444332 233333333 111111111111222222110 0000 012344555555443
Q ss_pred C-ccchHHHHHHH-HHhhHhhccC----CCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCCh
Q 048735 387 P-PDYTKDLLEEI-AENCLDLATD----RSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIP 460 (579)
Q Consensus 387 ~-~~~~~~Ii~~l-~~~l~~La~~----k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~ 460 (579)
. ++....+.+.. ..++..+..- -|-..|++-|+...-+ .+.=.....+.+..|+.--+|.+=|..+|..-..
T Consensus 242 ~s~~C~raLlkM~yCp~CqGl~~~kPC~gYC~NVmrGClA~~ad--Ld~~W~~~idSl~~L~~~l~g~~~iesvl~~i~v 319 (563)
T KOG3821|consen 242 FSEECSRALLKMIYCPHCQGLPSVKPCYGYCLNVMRGCLANQAD--LDPEWRNYIDSLLELADKLEGPFNIESVLLPIHV 319 (563)
T ss_pred CChHHHHHHHHHhcchhccCCCccCCcHHHHHHHHHHHhhhhcc--cchHHHHHHHHHHHHHHhhcCcchHHHHHhhhhh
Confidence 2 33333343333 2555555522 2445677777764321 4444555566677777777888878888876554
Q ss_pred hhHHHH
Q 048735 461 QVTADV 466 (579)
Q Consensus 461 ~~r~~I 466 (579)
..-+.|
T Consensus 320 ~iseAI 325 (563)
T KOG3821|consen 320 KISEAI 325 (563)
T ss_pred HHHHHH
Confidence 444433
No 28
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair. In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.
Probab=65.21 E-value=87 Score=32.21 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=12.8
Q ss_pred hhhccCCHHHHHHHHHHHH
Q 048735 262 KKVDERNPIDIEMILSEVI 280 (579)
Q Consensus 262 ~lLe~~~~e~~~~I~~ei~ 280 (579)
++|-.|++.+.+.+++++.
T Consensus 42 q~L~~csp~q~e~lc~~L~ 60 (263)
T PF11510_consen 42 QFLNECSPSQVEMLCSQLQ 60 (263)
T ss_dssp HGGGG--HHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHhC
Confidence 3445678888999888875
No 29
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=64.83 E-value=65 Score=39.55 Aligned_cols=12 Identities=50% Similarity=0.841 Sum_probs=5.9
Q ss_pred CCCCCCCCCCCC
Q 048735 98 SGLSRPSQFAAP 109 (579)
Q Consensus 98 ~~~~~~~~~~~~ 109 (579)
..++-|+-|+++
T Consensus 119 ~s~sgp~~~~~~ 130 (1639)
T KOG0905|consen 119 ASLSGPSLYPAP 130 (1639)
T ss_pred CCCCCCcCCCCC
Confidence 334455555554
No 30
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=62.09 E-value=50 Score=38.62 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHHHHHhhchhhhhhh
Q 048735 278 EVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRIC 326 (579)
Q Consensus 278 ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~l~~~~g~~~~La 326 (579)
+|+--+.++-.+.-..-.||.|+.+.++.....-+.+++ ..+.+|+
T Consensus 717 eik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~K---aeye~l~ 762 (1102)
T KOG1924|consen 717 EIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELK---AEYEDLP 762 (1102)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHH---HhccCCC
Confidence 444444444444455555666666665433333334444 4444444
No 31
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=61.66 E-value=3.2e+02 Score=34.07 Aligned_cols=157 Identities=12% Similarity=0.042 Sum_probs=94.4
Q ss_pred cCcchhHHHHHHHhhccHHHHHHHHHHHHhhchhhhhhhccccCC---HHHHHHHHhcCCCCccCCCHHHHHHHHHHHHh
Q 048735 288 RHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGS---RVMQKLLDAGEYPTRQQLTQEQQSLLVSALKN 364 (579)
Q Consensus 288 ~D~~Gs~VIQkLle~~s~eq~~~I~~~l~~~~g~~~~La~d~~Gs---rVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~ 364 (579)
+-.-+=.++|.|-.+.++|. .++.+. +.++.|..|.++- -.+.++.+.+ +....+.+.....+.+-|.+
T Consensus 439 tK~~ALeLl~~lS~~i~de~---~LDRVl---PY~v~l~~Ds~a~Vra~Al~Tlt~~L--~~Vr~~~~~daniF~eYlfP 510 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEV---KLDRVL---PYFVHLLMDSEADVRATALETLTELL--ALVRDIPPSDANIFPEYLFP 510 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHH---HHhhhH---HHHHHHhcCchHHHHHHHHHHHHHHH--hhccCCCcccchhhHhhhhh
Confidence 33344456666666666643 456667 8888888888762 3344444554 32344467778888999999
Q ss_pred hHhHhccCCCCchhhhhhccccCc---cchHHHHHHHHHhhHhhccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHH
Q 048735 365 ITVSLSKSPHGNHVIKRCLQKFPP---DYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVL 441 (579)
Q Consensus 365 ~i~~L~~D~~GnhVlQklLe~~~~---~~~~~Ii~~l~~~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~L 441 (579)
++..|..|...++|--....+++. ..-.|+.....-+...+-.++.. |...+...+.+..+|...+.+.+.+|
T Consensus 511 ~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~ns----et~~~~~~~~~~~~L~~~V~~~v~sL 586 (1431)
T KOG1240|consen 511 HLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNS----ETAPEQNYNTELQALHHTVEQMVSSL 586 (1431)
T ss_pred hhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCccc----ccccccccchHHHHHHHHHHHHHHHH
Confidence 999999998777776655555421 11111111111111111122222 13444445677888888888888888
Q ss_pred hhCcchhHHHHHHHhc
Q 048735 442 SEHSYGNYVVQYILGL 457 (579)
Q Consensus 442 a~D~~GnyVIQ~iLe~ 457 (579)
+.|.- ++|=+.+|+.
T Consensus 587 lsd~~-~~Vkr~Lle~ 601 (1431)
T KOG1240|consen 587 LSDSP-PIVKRALLES 601 (1431)
T ss_pred HcCCc-hHHHHHHHHH
Confidence 88876 6666666663
No 32
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.49 E-value=4e+02 Score=31.44 Aligned_cols=78 Identities=5% Similarity=0.032 Sum_probs=49.9
Q ss_pred hhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCChhhHHHHHH-----HHHHhHHhhcCCcchHHHHHHHHh
Q 048735 418 CIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVA-----QLAGRYFALSLGKCSSNVVQKCLL 492 (579)
Q Consensus 418 lLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~~~r~~Ii~-----~L~g~~~~Ls~~k~GS~VVEk~L~ 492 (579)
+....+++....|+..|+.++..---.-|-+-++..|++.+....-..|.+ .+...+..+....+|+.+-+.+++
T Consensus 360 l~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~D 439 (877)
T KOG1059|consen 360 LYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIID 439 (877)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 334446666777777777776543333556667777777766555444433 344456667778899999888888
Q ss_pred hcC
Q 048735 493 ESG 495 (579)
Q Consensus 493 ~a~ 495 (579)
.+-
T Consensus 440 v~i 442 (877)
T KOG1059|consen 440 VAI 442 (877)
T ss_pred Hhe
Confidence 653
No 33
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=52.78 E-value=47 Score=33.34 Aligned_cols=131 Identities=10% Similarity=0.077 Sum_probs=76.1
Q ss_pred CchhHHHHhhhhCCHHH---HHHHHHHHHHHHHHHhhCc-chhHHHHHHHhcCChhhHHHHHHHHHHhHHhhcCCcchHH
Q 048735 410 SGCCLLQYCIPLAQEEQ---KARLIADVVANAYVLSEHS-YGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSN 485 (579)
Q Consensus 410 ~Gs~VVQklLe~~~~~~---~~~Lv~~L~~~l~~La~D~-~GnyVIQ~iLe~~~~~~r~~Ii~~L~g~~~~Ls~~k~GS~ 485 (579)
.||..++.++....... ...++..+.+.+..+ |+ .|...-..++. .......+...-..-+..|+.++.|-.
T Consensus 83 vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~--d~~~g~~~~~~lfs--~~~l~~tl~~~Yf~~IG~lS~~~~Gl~ 158 (226)
T PF14666_consen 83 VGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQV--DPMSGITAHDPLFS--PQRLSTTLSRGYFLFIGVLSSTPNGLK 158 (226)
T ss_pred HHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHH--hhhcCCcccccccC--HHHHHhhHHHHHHHHHHHHhCChhHHH
Confidence 48888888877642222 123334443333333 11 11111111221 111233444444456778999999988
Q ss_pred HHHH------HHhhcCHHHHHHHHHHHhChhhHHHhhcCcChHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 048735 486 VVQK------CLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVDN 548 (579)
Q Consensus 486 VVEk------~L~~a~~~~r~~Ii~eL~~~~~l~~L~~d~~GnyVVQklL~~~~~~~~re~Ll~~L~~~ 548 (579)
++|+ +...+..+.+..++.-++. -.+...+....-++.++|..++. ..|....+.|+..
T Consensus 159 lLe~~~if~~l~~i~~~~~~~~l~klil~---~LDY~~~~~~R~iLsKaLt~~s~-~iRl~aT~~L~~l 223 (226)
T PF14666_consen 159 LLERWNIFTMLYHIFSLSSRDDLLKLILS---SLDYSVDGHPRIILSKALTSGSE-SIRLYATKHLRVL 223 (226)
T ss_pred HHHHCCHHHHHHHHHccCchHHHHHHHHh---hCCCCCccHHHHHHHHHHhcCCH-HHHHHHHHHHHHH
Confidence 7765 2233444466777777776 34777888899999999999998 7777666665543
No 34
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=52.24 E-value=3.1e+02 Score=28.95 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=17.2
Q ss_pred CccHHHHhhhccCCHHHHHHHHHHHH
Q 048735 255 QGCRFLQKKVDERNPIDIEMILSEVI 280 (579)
Q Consensus 255 ~gSr~LQ~lLe~~~~e~~~~I~~ei~ 280 (579)
+--++++.+++..+.+.++.-+..+.
T Consensus 198 YF~kvisal~dEs~~~~r~aAl~sLr 223 (450)
T COG5095 198 YFDKVISALLDESDEQTRDAALESLR 223 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33467777777777777776666553
No 35
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=47.84 E-value=3.9e+02 Score=28.76 Aligned_cols=48 Identities=17% Similarity=0.025 Sum_probs=24.5
Q ss_pred hhHHHHHHHhcCChhhHHHHHHHHHHhHHhhcCCcchHHHHHHHHhhcC
Q 048735 447 GNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESG 495 (579)
Q Consensus 447 GnyVIQ~iLe~~~~~~r~~Ii~~L~g~~~~Ls~~k~GS~VVEk~L~~a~ 495 (579)
...++..++... ...+..++..+..--..+..++.-+..+..+++...
T Consensus 177 ~~~l~~~l~~~~-k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~ 224 (372)
T PF12231_consen 177 FPILFPDLLSSA-KDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSL 224 (372)
T ss_pred HHHHHHHHhhcc-hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcccc
Confidence 345666666542 233444444444444444455566666666665443
No 36
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=47.50 E-value=4.9e+02 Score=29.84 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=19.9
Q ss_pred hhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhc
Q 048735 419 IPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGL 457 (579)
Q Consensus 419 Le~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~ 457 (579)
++..+++..+.++..+...+.-.+....++-.+.++.+.
T Consensus 234 f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~k 272 (556)
T PF05918_consen 234 FDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEK 272 (556)
T ss_dssp --SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHH
Confidence 455556666666666666555555555555555555543
No 37
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=46.12 E-value=3.7e+02 Score=28.07 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=4.9
Q ss_pred CHHHHHHHHHHHh
Q 048735 495 GEEQSTGIINEII 507 (579)
Q Consensus 495 ~~~~r~~Ii~eL~ 507 (579)
+.++...++....
T Consensus 326 ~~~~l~~~i~~~v 338 (367)
T PF04286_consen 326 DDEELEELIESKV 338 (367)
T ss_pred CHHHHHHHHHHHH
Confidence 3333333333333
No 38
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=45.99 E-value=4e+02 Score=28.48 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=20.3
Q ss_pred hHHHHHHHHhhcCHHHHHHHHHHHhChhhHHHhhcCcC
Q 048735 483 SSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPY 520 (579)
Q Consensus 483 GS~VVEk~L~~a~~~~r~~Ii~eL~~~~~l~~L~~d~~ 520 (579)
.+..+-..+.-++++.|++|...+.. ...+|+++..
T Consensus 263 ~~~~La~aLkg~~~~lrekilsnmsk--R~~e~i~~el 298 (339)
T COG1536 263 DKEDLAIALKGASEELREKILSNMSK--RAAEMLKEEL 298 (339)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHhccH--HHHHHHHHHh
Confidence 44555555666666666666666654 5555555443
No 39
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=44.86 E-value=3.6e+02 Score=29.00 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=18.7
Q ss_pred HHHHHHhcCcchhHHHHHHHhhc
Q 048735 281 DDLHELMRHQSANHLIQKLIGVL 303 (579)
Q Consensus 281 ~~~~~L~~D~~Gs~VIQkLle~~ 303 (579)
+.+.....+.++.+++...++..
T Consensus 77 ~~i~~~l~~d~~~~~i~~~i~~l 99 (372)
T PF12231_consen 77 PEIVSTLSDDFASFIIDHSIESL 99 (372)
T ss_pred HHHHhhCChHHHHHHHHHHHHHH
Confidence 67788888888888888888766
No 40
>cd07439 FANCE_c-term Fanconi anemia complementation group E protein, C-terminal domain. Fanconi Anemia (FA) is an autosomal recessive disorder associated with increased susceptibility to various cancers, bone marrow failure, cardiac, renal, and limb malformations, and other characteristics. Cells are highly sensitive to DNA damaging agents. A multi-subunit protein complex, the FA core complex, is responsible for ubiquitination of the protein FANCD2 in response to DNA damage. This monoubiquitination results in a downstream effect on homology-directed DNA repair. FANCE is part of the FA core complex and its C-terminal domain, which is modeled here, has been shown to directly interact with FANCD2. The domain contains a five-fold repeat of a structural unit similar to ARM and HEAT repeats. FANCE appears conserved in metazoa and in plants.
Probab=43.68 E-value=3.8e+02 Score=27.47 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=27.0
Q ss_pred HHHHhhhHHHHhcCCCc----cHHHHhhhccCCHHHHHHHHHHHHH
Q 048735 240 IEELRGRIILVAKDEQG----CRFLQKKVDERNPIDIEMILSEVID 281 (579)
Q Consensus 240 L~ei~Gki~eLa~Dq~g----Sr~LQ~lLe~~~~e~~~~I~~ei~~ 281 (579)
+++...++.+++....+ +-..=.++..+++++.+.++.++..
T Consensus 7 i~~~~~~ikeLl~~~~~~~~~~~~~L~~l~~~~~~~~~~lc~~L~~ 52 (254)
T cd07439 7 IQEVLEDIKELLLQEGEWLPSSPDELQFLHSCSPSQMEVLCSQLQL 52 (254)
T ss_pred HHHHHHHHHHHHHhhccCcCChHHHHHHHccCCHHHHHHHHHHhcc
Confidence 55666666676666554 4455556667777777777777653
No 41
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.62 E-value=3e+02 Score=32.40 Aligned_cols=75 Identities=8% Similarity=0.117 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHhChhhHHHhhcCcChHHHHHHHHhcCCcH-----HHHHHHHHHHHhhHHHHhhCCchHHHHHHHHhcc
Q 048735 495 GEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGR-----RIRQTLYDLVVDNSPFLQSHMYGKNVLAKVRGNK 569 (579)
Q Consensus 495 ~~~~r~~Ii~eL~~~~~l~~L~~d~~GnyVVQklL~~~~~~-----~~re~Ll~~L~~~l~~L~~~~~G~~Vv~kl~~~~ 569 (579)
+.+-...|++.|++ ++..=--.-|-+-.+-++++.|.-. ..++..+.-+.+ +..|....+|+.|-+.+.-.+
T Consensus 365 skkNl~eIVk~LM~--~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlve-La~l~~~~~G~~I~eQi~Dv~ 441 (877)
T KOG1059|consen 365 SKKNLMEIVKTLMK--HVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVE-LARLEGTRHGSLIAEQIIDVA 441 (877)
T ss_pred hhhhHHHHHHHHHH--HHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH-HHhccccchhhHHHHHHHHHh
Confidence 34445555555555 3333222345555555666655541 133444433333 445556777777777666555
Q ss_pred ccc
Q 048735 570 NRF 572 (579)
Q Consensus 570 ~~~ 572 (579)
-|.
T Consensus 442 iRV 444 (877)
T KOG1059|consen 442 IRV 444 (877)
T ss_pred eec
Confidence 443
No 42
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=41.40 E-value=7e+02 Score=29.96 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=29.6
Q ss_pred HHHHhhCcchhHHHHHHHhcCChhhHHHHHHHHHHhHHhhcCCcchHHHHHHHHhhcC
Q 048735 438 AYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESG 495 (579)
Q Consensus 438 l~~La~D~~GnyVIQ~iLe~~~~~~r~~Ii~~L~g~~~~Ls~~k~GS~VVEk~L~~a~ 495 (579)
...+-.|..|+.+-+.+++.+-. +..++.|..++... ...+|--..+.++...
T Consensus 299 ~~~I~~~~~G~~LK~~Il~~GIv---~~a~~YL~~~~P~~--~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 299 AEGIPNNSNGNRLKDKILESGIV---QDAIDYLLKHFPSL--KNTDSPEWKEFLSRPS 351 (802)
T ss_pred HhcCCCCCchHHHHHHHHHhhHH---HHHHHHHHHhCccc--ccCCCHHHHHHhcCCc
Confidence 33445677788888888875433 45555666665554 2224444445554443
No 43
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=40.31 E-value=6.2e+02 Score=29.01 Aligned_cols=109 Identities=13% Similarity=0.061 Sum_probs=48.7
Q ss_pred cCChhhHHHHHHHHHHhHHhhcCCcch------HHH---HHHHHhhcCHHHHHHHHHHHhChhhHHHhhcCcCh-----H
Q 048735 457 LKIPQVTADVVAQLAGRYFALSLGKCS------SNV---VQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYG-----N 522 (579)
Q Consensus 457 ~~~~~~r~~Ii~~L~g~~~~Ls~~k~G------S~V---VEk~L~~a~~~~r~~Ii~eL~~~~~l~~L~~d~~G-----n 522 (579)
.+++..|+++++.|...+..|-....- .+| +.++|.-.+.++...+++-|..-..+. .....-| .
T Consensus 144 ~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~-~~~t~~g~qeLv~ 222 (556)
T PF05918_consen 144 SGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYG-GKQTIEGRQELVD 222 (556)
T ss_dssp HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG----GSSHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcccc-ccCChHHHHHHHH
Confidence 344555777777777777766555444 223 334444445566666665443310000 0111111 1
Q ss_pred HHHHHH-----HhcCCcHHHHHHHHHHHHhhHHHHhhCCchHHHHHHHHh
Q 048735 523 YVIQTA-----WDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKVRG 567 (579)
Q Consensus 523 yVVQkl-----L~~~~~~~~re~Ll~~L~~~l~~L~~~~~G~~Vv~kl~~ 567 (579)
.|...+ +...++ +.-.+++..+...++-......+.+.+..+..
T Consensus 223 ii~eQa~Ld~~f~~sD~-e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~ 271 (556)
T PF05918_consen 223 IIEEQADLDQPFDPSDP-ESIDRLISCLRQALPFFSRGVSSSKFVNYMCE 271 (556)
T ss_dssp HHHHHHTTTS---SSSH-HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH
T ss_pred HHHHHhccCCCCCCcCH-HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH
Confidence 122122 233333 45556666666666666666666666665543
No 44
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.08 E-value=7.6e+02 Score=29.67 Aligned_cols=209 Identities=15% Similarity=0.138 Sum_probs=99.7
Q ss_pred hhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHh-HhccC--CCCchhhhh---hccccCccc---hHHHH
Q 048735 325 ICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITV-SLSKS--PHGNHVIKR---CLQKFPPDY---TKDLL 395 (579)
Q Consensus 325 La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~-~L~~D--~~GnhVlQk---lLe~~~~~~---~~~Ii 395 (579)
...+.|+...+.|++-..+.+....++++.....+..+..++. .+... ...-|+++. ++....... ...++
T Consensus 512 ~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l 591 (960)
T KOG1992|consen 512 RVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELL 591 (960)
T ss_pred hHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHH
Confidence 4567888888888886652211122344444433333333322 11111 112233333 333332222 33455
Q ss_pred HHHHHhhHhhccCCCchhHHHHhhh----------hCCHHHHHHHHHHHHHHHHH-HhhC-----cchhHHHHHHHhcCC
Q 048735 396 EEIAENCLDLATDRSGCCLLQYCIP----------LAQEEQKARLIADVVANAYV-LSEH-----SYGNYVVQYILGLKI 459 (579)
Q Consensus 396 ~~l~~~l~~La~~k~Gs~VVQklLe----------~~~~~~~~~Lv~~L~~~l~~-La~D-----~~GnyVIQ~iLe~~~ 459 (579)
..+.+-+.+.+.++.....=--++| ..+......+...|..-+.. |.+| +|+=.++-.+++...
T Consensus 592 ~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~ 671 (960)
T KOG1992|consen 592 RQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSS 671 (960)
T ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5555666667776654432222222 11223334444444443332 3333 344444445555544
Q ss_pred h---hhHHHHHH-HHHHhHHhhcCC-cchHHHHHHHHhhcCHHHH-HHHHHHHhChhhHHHh----hcCcChHHHHHHHH
Q 048735 460 P---QVTADVVA-QLAGRYFALSLG-KCSSNVVQKCLLESGEEQS-TGIINEIIRHPEIVQL----ILDPYGNYVIQTAW 529 (579)
Q Consensus 460 ~---~~r~~Ii~-~L~g~~~~Ls~~-k~GS~VVEk~L~~a~~~~r-~~Ii~eL~~~~~l~~L----~~d~~GnyVVQklL 529 (579)
. +....++. .|.+.+.+.+-. +---++++.+++.++...- ..-+.-+++ .+..| +.|.+|=|.+++++
T Consensus 672 ~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLG--ifqkLiaSka~Dh~GF~LLn~i~ 749 (960)
T KOG1992|consen 672 GTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILG--IFQKLIASKANDHHGFYLLNTII 749 (960)
T ss_pred CCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHH--HHHHHhcCcccchhHHHHHHHHH
Confidence 3 22333333 233344333333 2234778888887764311 122333344 44444 46899999999999
Q ss_pred hcCCcH
Q 048735 530 DVSQGR 535 (579)
Q Consensus 530 ~~~~~~ 535 (579)
...+..
T Consensus 750 ~~~~~~ 755 (960)
T KOG1992|consen 750 ESIPPN 755 (960)
T ss_pred hcCCHh
Confidence 998873
No 45
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=38.57 E-value=80 Score=32.42 Aligned_cols=80 Identities=15% Similarity=0.259 Sum_probs=41.1
Q ss_pred HHHhhhccCCHHHHHHHHH-HHHHHHHHHhc------CcchhHHHHHHHhhc--------cHHHHHHHHHHHHhhchhhh
Q 048735 259 FLQKKVDERNPIDIEMILS-EVIDDLHELMR------HQSANHLIQKLIGVL--------NEEQMTKLILSVVSSQQRLL 323 (579)
Q Consensus 259 ~LQ~lLe~~~~e~~~~I~~-ei~~~~~~L~~------D~~Gs~VIQkLle~~--------s~eq~~~I~~~l~~~~g~~~ 323 (579)
|+-.+++..+.|.+..+++ |+.|-....|. -..+.|++||++..- +.+.+..+...+. .-+.
T Consensus 119 VIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~---~mV~ 195 (262)
T PF04078_consen 119 VIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLN---KMVE 195 (262)
T ss_dssp HHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHH---HHHH
Confidence 3444566555665554443 66664444332 234678889887543 4555555555555 3444
Q ss_pred hhhccccCCHHHHHHHHhc
Q 048735 324 RICDDLSGSRVMQKLLDAG 342 (579)
Q Consensus 324 ~La~d~~GsrVLQklLe~~ 342 (579)
.++.+. ..|++..++.+.
T Consensus 196 ~l~~~p-S~RLLKhIIrCY 213 (262)
T PF04078_consen 196 QLVKQP-SPRLLKHIIRCY 213 (262)
T ss_dssp HHHHS---HHHHHHHHHHH
T ss_pred HHccCC-ChhHHHHHHHHH
Confidence 443333 556666655543
No 46
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=38.44 E-value=3.4e+02 Score=34.43 Aligned_cols=107 Identities=10% Similarity=0.099 Sum_probs=58.3
Q ss_pred HHHHHHHHhHHhhcCCcchHHHHHHHHhhcCHHHHHHHHHHHhChhhHHHhhcCcChHHHHHHHHhcCCcHHHHHHHHHH
Q 048735 465 DVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDL 544 (579)
Q Consensus 465 ~Ii~~L~g~~~~Ls~~k~GS~VVEk~L~~a~~~~r~~Ii~eL~~~~~l~~L~~d~~GnyVVQklL~~~~~~~~re~Ll~~ 544 (579)
.+...|.+-+..-.+..-+-.+++.+++... +-.+++-.... .+..--.-+-+.-|++++|.+... ..+..+++.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~--fLl~~ne~~aa~~lL~rAL~~lPk-~eHv~~Isk 1605 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYAD--FLLRQNEAEAARELLKRALKSLPK-QEHVEFISK 1605 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHH--HHhcccHHHHHHHHHHHHHhhcch-hhhHHHHHH
Confidence 3344555555555555556666666665433 22222222222 222222224566677777777776 677777766
Q ss_pred HHhhHHHHhhCCchHHHHHHHHhccccccccccCC
Q 048735 545 VVDNSPFLQSHMYGKNVLAKVRGNKNRFHNRVAMW 579 (579)
Q Consensus 545 L~~~l~~L~~~~~G~~Vv~kl~~~~~~~~~r~~~w 579 (579)
........--...||-+.+-++ .++.+|..+|
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll---~ayPKRtDlW 1637 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLL---SAYPKRTDLW 1637 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHH---hhCccchhHH
Confidence 6665555555666666666554 3455666666
No 47
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=37.60 E-value=5.2e+02 Score=27.30 Aligned_cols=66 Identities=30% Similarity=0.329 Sum_probs=33.0
Q ss_pred ecccCCCCcccccCCCCCCCCCccccccccccccCCCcccccccCCCcccccCCCCCCCCCCCCCCCCCC
Q 048735 43 PIYQKPNQQDYHVENPSLQNPTTQDQLSGHLHYSNYPYDKSLAMEPSTCRCRTPESGLSRPSQFAAPRPP 112 (579)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (579)
|+.|.+-|+.--.|-|--..-..+-|-|-|+.-|. .+++--|+.-+--.++++.+|+.-|-.-.||
T Consensus 187 p~~qp~~q~s~~~e~p~~~~l~s~~~~s~~i~~s~----a~~qs~p~~~~n~P~~~~~~~p~~~~~apPp 252 (389)
T KOG2932|consen 187 PDVQPTMQQSSASESPLRAPLRSQLQQSREINRSA----AKSQSGPSQVQNYPPDSDNSRPPGFETAPPP 252 (389)
T ss_pred CCCCCccccchhhcCCcccchhcccccccccccCc----cccccCchhhccCCCcccCCCCcccccCCCC
Confidence 34444444444444433332233333444444442 3344555655556677888888877644433
No 48
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=37.52 E-value=7.2e+02 Score=28.97 Aligned_cols=55 Identities=13% Similarity=-0.026 Sum_probs=33.4
Q ss_pred HHHhhcCcChHHHHHHHHhcCCcH--HHHHHHHHHHHhhHHHHhhCCchHHHHHHHH
Q 048735 512 IVQLILDPYGNYVIQTAWDVSQGR--RIRQTLYDLVVDNSPFLQSHMYGKNVLAKVR 566 (579)
Q Consensus 512 l~~L~~d~~GnyVVQklL~~~~~~--~~re~Ll~~L~~~l~~L~~~~~G~~Vv~kl~ 566 (579)
-..|++---..+|+.++++...++ ..|+.-+.....-+..|-...++-+..+++.
T Consensus 510 tvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~ 566 (975)
T COG5181 510 TVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLY 566 (975)
T ss_pred HHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHH
Confidence 445666666678899999888763 2454444444444445555666666655543
No 49
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=37.49 E-value=5.8e+02 Score=27.85 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHHhHHhhcCCcchH--HHHHHHHhhcCHHHHHHHHHHHhChhhHHHhhcCcChHHHHHHHHhcCCc
Q 048735 460 PQVTADVVAQLAGRYFALSLGKCSS--NVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQG 534 (579)
Q Consensus 460 ~~~r~~Ii~~L~g~~~~Ls~~k~GS--~VVEk~L~~a~~~~r~~Ii~eL~~~~~l~~L~~d~~GnyVVQklL~~~~~ 534 (579)
+.....+++.+..++......|--. +.++.+++..++++...++..++. .+...+.+++- -|.+++|.....
T Consensus 250 p~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~--~la~ci~S~h~-qVAErAl~~w~n 323 (409)
T PF01603_consen 250 PSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFK--RLAKCISSPHF-QVAERALYFWNN 323 (409)
T ss_dssp GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH--HHHHHHTSSSH-HHHHHHHGGGGS
T ss_pred chhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HHHHHhCCCCH-HHHHHHHHHHCC
Confidence 3334445555554444333333222 346778888888888888888887 66666555554 667777777666
No 50
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=36.29 E-value=43 Score=39.97 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=66.5
Q ss_pred hHHHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHHHH-----------------HHHh----cCcchhHHHHHHHhhcc
Q 048735 246 RIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDL-----------------HELM----RHQSANHLIQKLIGVLN 304 (579)
Q Consensus 246 ki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~-----------------~~L~----~D~~Gs~VIQkLle~~s 304 (579)
.++.+..=..|-++|-++|..-+.+++.+|+..|.-++ ..+. .|-|-..|+-.|+.+.+
T Consensus 576 ~fi~~ls~~KGkkll~R~~~~l~~~q~~~il~~i~~~l~~l~vv~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~i~ 655 (808)
T PF09770_consen 576 PFISILSVRKGKKLLPRIFPFLSQEQRLTILTMIFRHLDQLDVVRRASYTDGEDQPLLIKRDDIELFLQAVMPPLMNVIN 655 (808)
T ss_dssp HHHHHTTSHHHHHHHHHHGGGS-HHHHHHHHHHHHHTH-----------------HHHHHTTTTT--GGGGHHHS-HHHH
T ss_pred cceEEEeeCChheeHHhhhhhCChhHHHHHHHHHHHHhhhhcccccccccccccCccccchHhHHHHHHHHHHHHHHHHH
Confidence 34555555678889999999999999999999998888 3333 35566677777777777
Q ss_pred HHHHHHHHHHHHh--hchhhhhhhccccCCHHHHHHHHhc
Q 048735 305 EEQMTKLILSVVS--SQQRLLRICDDLSGSRVMQKLLDAG 342 (579)
Q Consensus 305 ~eq~~~I~~~l~~--~~g~~~~La~d~~GsrVLQklLe~~ 342 (579)
+..+..|+..+.. ...++.-++++++|--+|-.+|..+
T Consensus 656 ~~~~~~i~gll~~~~~~~~~~~i~~tk~Gls~lt~llsRa 695 (808)
T PF09770_consen 656 EAPFNEIIGLLGLLINNNNVSFIAQTKFGLSLLTMLLSRA 695 (808)
T ss_dssp HHHHHHHTTSTTT-S--HHHHHHHTSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhCCCceEEEEChHHHHHHHHHHHHH
Confidence 6655555433221 1267778899999999988888665
No 51
>PF14967 FAM70: FAM70 protein
Probab=34.13 E-value=1.9e+02 Score=30.14 Aligned_cols=38 Identities=34% Similarity=0.597 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCC
Q 048735 102 RPSQFAAPRPPLSQYLPYPIPLNQAQYSFINSLPTSFPL 140 (579)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (579)
..+-|-.+.|+++.+..||.|+ ++...|-+|.+.--+.
T Consensus 251 ay~gf~p~~~~lP~~ssYPlpl-Q~~~~fP~s~ss~ls~ 288 (327)
T PF14967_consen 251 AYAGFCPSPPTLPTYSSYPLPL-QPSSSFPASPSSDLSL 288 (327)
T ss_pred cccCccCCCCCCCCCCCcCccC-CccCCCCCCCCccCCc
Confidence 3444667778888888888888 7777777766665553
No 52
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=33.19 E-value=9.2e+02 Score=28.89 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=38.0
Q ss_pred HHHHhhhHHHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHHhc
Q 048735 240 IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMR 288 (579)
Q Consensus 240 L~ei~Gki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~ 288 (579)
.+||+.-|+++-.|--..-+||.+++..++.+.-.-+.+++....+|+.
T Consensus 715 yeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e 763 (1102)
T KOG1924|consen 715 YEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPE 763 (1102)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 6888888888888888888999999988766666666777766666543
No 53
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.98 E-value=1.1e+03 Score=29.56 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHh
Q 048735 333 RVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITV 367 (579)
Q Consensus 333 rVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~ 367 (579)
.++-.+++.. +.+....+.+.|..-+.
T Consensus 719 ~~L~~L~~~~--------~~e~~~~i~k~I~EvIL 745 (1176)
T KOG1248|consen 719 KCLKRLLKLL--------SAEHCDLIPKLIPEVIL 745 (1176)
T ss_pred HHHHHHHHhc--------cHHHHHHHHHHHHHHHH
Confidence 3455566655 34455554444444333
No 54
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=32.55 E-value=6.5e+02 Score=26.94 Aligned_cols=30 Identities=7% Similarity=0.065 Sum_probs=16.9
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHhhHHH
Q 048735 521 GNYVIQTAWDVSQGRRIRQTLYDLVVDNSPF 551 (579)
Q Consensus 521 GnyVVQklL~~~~~~~~re~Ll~~L~~~l~~ 551 (579)
.+.++..+|..+.+ .+|++|++-+.....+
T Consensus 263 ~~~~La~aLkg~~~-~lrekilsnmskR~~e 292 (339)
T COG1536 263 DKEDLAIALKGASE-ELREKILSNMSKRAAE 292 (339)
T ss_pred CHHHHHHHHcCCCH-HHHHHHHHhccHHHHH
Confidence 45555566666665 5666666655444433
No 55
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=32.34 E-value=6.3e+02 Score=26.77 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=26.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhcCcchh-HHHHHHHhhc-cHHHHHHHHHHHH
Q 048735 266 ERNPIDIEMILSEVIDDLHELMRHQSAN-HLIQKLIGVL-NEEQMTKLILSVV 316 (579)
Q Consensus 266 ~~~~e~~~~I~~ei~~~~~~L~~D~~Gs-~VIQkLle~~-s~eq~~~I~~~l~ 316 (579)
.-+.++.+.|++++...+..-..-..|+ -.++++++.+ .++.-..|++.+.
T Consensus 49 ~v~~~~~~~vl~eF~~~~~~~~~~~~g~~~~~~~~L~~alg~~~a~~il~~i~ 101 (334)
T PRK07194 49 GIKVDQARQVLQRFFDDYREQSGINGASRSYLQRTLNKALGGDIAKSLINSIY 101 (334)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCHHHHHHHHHHHh
Confidence 4466667777776666554332222233 2445555444 4445555666555
No 56
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=31.61 E-value=2.9e+02 Score=32.63 Aligned_cols=36 Identities=25% Similarity=0.508 Sum_probs=23.8
Q ss_pred CCCCCCCC-CCCCCCCCCCCC--CCCCCCCCCCcccCCC
Q 048735 99 GLSRPSQF-AAPRPPLSQYLP--YPIPLNQAQYSFINSL 134 (579)
Q Consensus 99 ~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 134 (579)
|.-|+-+- +.+++|...-.| |++|.+.++++|+.-+
T Consensus 582 g~~~~~~P~~~pg~P~~~~~Ppa~p~~~~~ppPgf~Pnp 620 (894)
T KOG0132|consen 582 GRPRPQKPPPRPGAPIPSGEPPAFPGPMWHPPPGFVPNP 620 (894)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCC
Confidence 33333333 466777777777 7788888888888733
No 57
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=31.25 E-value=6.2e+02 Score=26.34 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhChhhHHHhhcC---cChHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHhh
Q 048735 497 EQSTGIINEIIRHPEIVQLILD---PYGNYVIQTAWDVSQGRRIRQTLYDLVVDNSPFLQS 554 (579)
Q Consensus 497 ~~r~~Ii~eL~~~~~l~~L~~d---~~GnyVVQklL~~~~~~~~re~Ll~~L~~~l~~L~~ 554 (579)
+.++.|-+.+.. .+..++.. ..|..|-+++ ...++++.-+.|.+.+...+.-++-
T Consensus 290 ~l~~~i~~~i~~--~l~~~v~~~~~~i~~~V~~~l-~~~~~~~l~~~i~~~v~~dL~~Iri 347 (367)
T PF04286_consen 290 ELREKINRFIEN--LLERIVESNHIDIGEIVEEKL-NSLDDEELEELIESKVGKDLQWIRI 347 (367)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHhHhhhh
Confidence 344444444444 45555544 4444444444 4445524444454555555544433
No 58
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.87 E-value=1e+03 Score=28.69 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=33.9
Q ss_pred chhHHHHhhhhCCHHHH-HHHHHHHHHHHHHH----hhCcchhHHHHHHHhcCChhh
Q 048735 411 GCCLLQYCIPLAQEEQK-ARLIADVVANAYVL----SEHSYGNYVVQYILGLKIPQV 462 (579)
Q Consensus 411 Gs~VVQklLe~~~~~~~-~~Lv~~L~~~l~~L----a~D~~GnyVIQ~iLe~~~~~~ 462 (579)
--++++.+++.++.... ..-+.-+++.+..| +.|.+|-|++++++++-++..
T Consensus 700 lvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~~~~ 756 (960)
T KOG1992|consen 700 LVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPNE 756 (960)
T ss_pred HHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCCHhh
Confidence 45678888876643322 12234455555444 568999999999999887764
No 59
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.79 E-value=9e+02 Score=30.16 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=37.2
Q ss_pred CccHHHHhhhcc-----CCHHHHHHHHHHHHHHHHHHhcCcchh--HHHHHHHhhccHHHHHHHHHHHH
Q 048735 255 QGCRFLQKKVDE-----RNPIDIEMILSEVIDDLHELMRHQSAN--HLIQKLIGVLNEEQMTKLILSVV 316 (579)
Q Consensus 255 ~gSr~LQ~lLe~-----~~~e~~~~I~~ei~~~~~~L~~D~~Gs--~VIQkLle~~s~eq~~~I~~~l~ 316 (579)
.+.|+|..++.. ......+.|++.+.+.+.....-.-.. .++-.+++.++.+....+...|.
T Consensus 673 K~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~ 741 (1176)
T KOG1248|consen 673 KAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIP 741 (1176)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 456677777765 334456677777777666554433333 36677777777555555555544
No 60
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=30.31 E-value=7.8e+02 Score=27.17 Aligned_cols=32 Identities=19% Similarity=0.022 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhHHhhcC-CcchHHHHHHHHhhc
Q 048735 463 TADVVAQLAGRYFALSL-GKCSSNVVQKCLLES 494 (579)
Q Consensus 463 r~~Ii~~L~g~~~~Ls~-~k~GS~VVEk~L~~a 494 (579)
...|-+.|...+..|+. |.|-+-|-...|.=+
T Consensus 312 i~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WS 344 (442)
T KOG2759|consen 312 IEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWS 344 (442)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCC
Confidence 33444555556666654 366666655555433
No 61
>cd07439 FANCE_c-term Fanconi anemia complementation group E protein, C-terminal domain. Fanconi Anemia (FA) is an autosomal recessive disorder associated with increased susceptibility to various cancers, bone marrow failure, cardiac, renal, and limb malformations, and other characteristics. Cells are highly sensitive to DNA damaging agents. A multi-subunit protein complex, the FA core complex, is responsible for ubiquitination of the protein FANCD2 in response to DNA damage. This monoubiquitination results in a downstream effect on homology-directed DNA repair. FANCE is part of the FA core complex and its C-terminal domain, which is modeled here, has been shown to directly interact with FANCD2. The domain contains a five-fold repeat of a structural unit similar to ARM and HEAT repeats. FANCE appears conserved in metazoa and in plants.
Probab=30.08 E-value=6.2e+02 Score=25.93 Aligned_cols=201 Identities=16% Similarity=0.129 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHhcCcch----hHHHHHHHhhccHHHHHHHHHHHHhhchhhhhhhccccCCHHHHHHHHhcCCCCccC
Q 048735 274 MILSEVIDDLHELMRHQSA----NHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQ 349 (579)
Q Consensus 274 ~I~~ei~~~~~~L~~D~~G----s~VIQkLle~~s~eq~~~I~~~l~~~~g~~~~La~d~~GsrVLQklLe~~~~~~~~~ 349 (579)
.+..+..+.+.+|+...-+ ....=.+++-+++++...+...+.-. . ..|.-....+..++......
T Consensus 5 ~~i~~~~~~ikeLl~~~~~~~~~~~~~L~~l~~~~~~~~~~lc~~L~~~--~----~~d~~~~~Lcs~lL~~~~~~---- 74 (254)
T cd07439 5 SVIQEVLEDIKELLLQEGEWLPSSPDELQFLHSCSPSQMEVLCSQLQLS--S----LSDQTLLLLCSSLLPLSPDL---- 74 (254)
T ss_pred HHHHHHHHHHHHHHHhhccCcCChHHHHHHHccCCHHHHHHHHHHhccC--C----cccHHHHHHHHHHhccCCcc----
Confidence 3455666677777666554 66667788888888888887776621 1 11111111222222221000
Q ss_pred CCHHHHH-HHHHHHHhhHhHhccCCCCchhhhhhccccCccchHHHHHHHHHhh-HhhccCCCchhHHHHhhhhC-CHHH
Q 048735 350 LTQEQQS-LLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENC-LDLATDRSGCCLLQYCIPLA-QEEQ 426 (579)
Q Consensus 350 ~~~eq~~-~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~~~~~~~Ii~~l~~~l-~~La~~k~Gs~VVQklLe~~-~~~~ 426 (579)
+..... .+...+.+.+..+- .-++.++-..+..+-...-..+++++..-+ .....+..-+.++.++++.+ ..+.
T Consensus 75 -s~~~~~~~~~~l~LpKl~~l~--~~aSR~L~~al~~f~~r~~~~~ceall~PLl~~~~~~~~q~ell~rlike~~~~~~ 151 (254)
T cd07439 75 -SLANAVVFTRHLLLPKLLSLN--ESASRALVAALASFAKRYPRPFCEALLRPLLQCPHPGPFQAELLCRLVKECFEPDA 151 (254)
T ss_pred -CcccHHHHHHHHHhhhhhccC--cchhHHHHHHHHHHHHhCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHhccccHHH
Confidence 111111 12222333433332 333322222222111122233334333222 22223444455666666655 3333
Q ss_pred HHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCC---hhhHHHHHHHHHHhHHhhcCC-cchHHHHH
Q 048735 427 KARLIADVVANAYVLSEHSYGNYVVQYILGLKI---PQVTADVVAQLAGRYFALSLG-KCSSNVVQ 488 (579)
Q Consensus 427 ~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~---~~~r~~Ii~~L~g~~~~Ls~~-k~GS~VVE 488 (579)
...++..++.. ..+.-+..---|+|.+|+... ++....++..+..+-..++++ |||.-++.
T Consensus 152 ~~l~~~q~L~~-~~~~W~E~~~~v~q~lL~~~~~lte~~~~~Lv~~L~~~a~~~skSlkFa~lll~ 216 (254)
T cd07439 152 VLLLLHQILIS-PNLVWTEETFTVIQALLNRKPPLSEESFSELVSKLQEQAEAFSKSLKFAKLLLA 216 (254)
T ss_pred HHHHHHHHHcc-ccccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 33333333321 112222333357788887643 333556666666666666666 66654443
No 62
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=29.34 E-value=3.5e+02 Score=25.03 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=17.3
Q ss_pred CchhhhhhccccCccchHHHHHHHHHh
Q 048735 375 GNHVIKRCLQKFPPDYTKDLLEEIAEN 401 (579)
Q Consensus 375 GnhVlQklLe~~~~~~~~~Ii~~l~~~ 401 (579)
|+..+..++..++.+....+++.+.+.
T Consensus 47 g~~~l~~~i~~L~~~~l~~LL~~ir~W 73 (141)
T PF08625_consen 47 GSEELDEVIKKLDDEQLEKLLRFIRDW 73 (141)
T ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 566777777777766666655554443
No 63
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=27.67 E-value=1e+02 Score=28.77 Aligned_cols=53 Identities=21% Similarity=0.443 Sum_probs=29.7
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCC--CCCCCCCCCCCCCCc
Q 048735 89 STCRCRTPESGLSRPSQFAAPRPPLSQYLPYPIPLNQAQYSFINSL--PTSFPLENHETIDLQ 149 (579)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 149 (579)
.-|.|-.-..| +|-.-+++. .-.++.-||. ..++|++.-++ |...| |++.+.+
T Consensus 83 cvCmc~kn~rg-sRvgv~~tt--~in~v~SyP~--apPpysy~~e~~~~~d~P---PpYsp~~ 137 (155)
T PF10873_consen 83 CVCMCMKNSRG-SRVGVIRTT--HINAVSSYPA--APPPYSYDHEMEYPPDLP---PPYSPTP 137 (155)
T ss_pred HHhhhhhcCCC-ccccceecc--ccccccccCC--CCCCccccccccccCCCC---cCCCCcc
Confidence 34677666666 676666543 3344443443 46777776554 44444 6666663
No 64
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=25.97 E-value=1.2e+03 Score=30.23 Aligned_cols=26 Identities=23% Similarity=0.586 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHhhc
Q 048735 278 EVIDDLHELMRHQSANHLIQKLIGVL 303 (579)
Q Consensus 278 ei~~~~~~L~~D~~Gs~VIQkLle~~ 303 (579)
+|+..+.+++-|.--.-|+..|.+..
T Consensus 211 eiI~~LPeIl~ds~h~~v~~~L~~ll 236 (1426)
T PF14631_consen 211 EIISSLPEILDDSQHDEVVEELLELL 236 (1426)
T ss_dssp HHHHTHHHHS-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 45566778888877777777776666
No 65
>PTZ00429 beta-adaptin; Provisional
Probab=25.89 E-value=1.2e+03 Score=27.84 Aligned_cols=297 Identities=9% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHhhhccCCHHHHHHHHHHHH-------------HHHHHHhcCcchhHHHHHHHhhc-------cHHHHHHHHHHHHhh-
Q 048735 260 LQKKVDERNPIDIEMILSEVI-------------DDLHELMRHQSANHLIQKLIGVL-------NEEQMTKLILSVVSS- 318 (579)
Q Consensus 260 LQ~lLe~~~~e~~~~I~~ei~-------------~~~~~L~~D~~Gs~VIQkLle~~-------s~eq~~~I~~~l~~~- 318 (579)
|.+.|...+.+.+...++.+. +++..++... ++.+.||+-.. .++.-...++.+.++
T Consensus 37 Lr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~--d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl 114 (746)
T PTZ00429 37 LQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPST--DLELKKLVYLYVLSTARLQPEKALLAVNTFLQDT 114 (746)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHc
Q ss_pred ---chhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHH---------------------------HHHHHhhHhH
Q 048735 319 ---QQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLL---------------------------VSALKNITVS 368 (579)
Q Consensus 319 ---~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l---------------------------~~eL~~~i~~ 368 (579)
.+.+..++...-++--+..+++.+ ....+..+ ...+.+.+.+
T Consensus 115 ~d~Np~IRaLALRtLs~Ir~~~i~e~l--------~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~ 186 (746)
T PTZ00429 115 TNSSPVVRALAVRTMMCIRVSSVLEYT--------LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVE 186 (746)
T ss_pred CCCCHHHHHHHHHHHHcCCcHHHHHHH--------HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHH
Q ss_pred hccCCCCchhhhhhcccc-----CccchHHHHHHHHHhhHhh-ccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHh
Q 048735 369 LSKSPHGNHVIKRCLQKF-----PPDYTKDLLEEIAENCLDL-ATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLS 442 (579)
Q Consensus 369 L~~D~~GnhVlQklLe~~-----~~~~~~~Ii~~l~~~l~~L-a~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La 442 (579)
|..|.+...|...+.-.. .++........+..-+..+ .++..|...+-+++....+..... ...+...+....
T Consensus 187 LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e-~~~il~~l~~~L 265 (746)
T PTZ00429 187 LLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES-AETLLTRVLPRM 265 (746)
T ss_pred HhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHh
Q ss_pred hCcchhHHHH------HHHhcCChhhHHHHHHHHHHhHHhhcC-CcchHHHHHHHHhhcCHHHHHHHHHHHhChhhHHHh
Q 048735 443 EHSYGNYVVQ------YILGLKIPQVTADVVAQLAGRYFALSL-GKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQL 515 (579)
Q Consensus 443 ~D~~GnyVIQ------~iLe~~~~~~r~~Ii~~L~g~~~~Ls~-~k~GS~VVEk~L~~a~~~~r~~Ii~eL~~~~~l~~L 515 (579)
++....-|+. ++.....+.....++..+..-++.|.. ++.-.+|+-+.+...-......+...+.. +.-+
T Consensus 266 q~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~---Ff~~ 342 (746)
T PTZ00429 266 SHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDS---FYVR 342 (746)
T ss_pred cCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHh---hhcc
Q ss_pred hcCcChHHH----HHHHHhcCCcHHHHHHHHHHHHhhHHHHhhCCchHHHHHHHHhccccccc
Q 048735 516 ILDPYGNYV----IQTAWDVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKVRGNKNRFHN 574 (579)
Q Consensus 516 ~~d~~GnyV----VQklL~~~~~~~~re~Ll~~L~~~l~~L~~~~~G~~Vv~kl~~~~~~~~~ 574 (579)
..|+. || +.-++..++. +--+.|+++|..++.+.-.. +.+.+|..+-..+.++..
T Consensus 343 ~~Dp~--yIK~~KLeIL~~Lane-~Nv~~IL~EL~eYa~d~D~e-f~r~aIrAIg~lA~k~~~ 401 (746)
T PTZ00429 343 YSDPP--FVKLEKLRLLLKLVTP-SVAPEILKELAEYASGVDMV-FVVEVVRAIASLAIKVDS 401 (746)
T ss_pred cCCcH--HHHHHHHHHHHHHcCc-ccHHHHHHHHHHHhhcCCHH-HHHHHHHHHHHHHHhChH
No 66
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=25.87 E-value=1e+02 Score=36.78 Aligned_cols=94 Identities=13% Similarity=0.166 Sum_probs=55.8
Q ss_pred hhHhhccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHH-----------------hh----CcchhHHHHHHHhcCC
Q 048735 401 NCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVL-----------------SE----HSYGNYVVQYILGLKI 459 (579)
Q Consensus 401 ~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~L-----------------a~----D~~GnyVIQ~iLe~~~ 459 (579)
-++.+..-.-|-++|-++|.+.+.+++..|+..|..++..| +. |.+-..|+..++....
T Consensus 576 ~fi~~ls~~KGkkll~R~~~~l~~~q~~~il~~i~~~l~~l~vv~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~i~ 655 (808)
T PF09770_consen 576 PFISILSVRKGKKLLPRIFPFLSQEQRLTILTMIFRHLDQLDVVRRASYTDGEDQPLLIKRDDIELFLQAVMPPLMNVIN 655 (808)
T ss_dssp HHHHHTTSHHHHHHHHHHGGGS-HHHHHHHHHHHHHTH-----------------HHHHHTTTTT--GGGGHHHS-HHHH
T ss_pred cceEEEeeCChheeHHhhhhhCChhHHHHHHHHHHHHhhhhcccccccccccccCccccchHhHHHHHHHHHHHHHHHHH
Confidence 35566777779999999999999999889999998888332 21 2222223222222211
Q ss_pred hhhHHHHHH---HH--HHhHHhhcCCcchHHHHHHHHhhc
Q 048735 460 PQVTADVVA---QL--AGRYFALSLGKCSSNVVQKCLLES 494 (579)
Q Consensus 460 ~~~r~~Ii~---~L--~g~~~~Ls~~k~GS~VVEk~L~~a 494 (579)
......|+. .| ..++..++++|+|--+|-.+|..+
T Consensus 656 ~~~~~~i~gll~~~~~~~~~~~i~~tk~Gls~lt~llsRa 695 (808)
T PF09770_consen 656 EAPFNEIIGLLGLLINNNNVSFIAQTKFGLSLLTMLLSRA 695 (808)
T ss_dssp HHHHHHHTTSTTT-S--HHHHHHHTSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhCCCceEEEEChHHHHHHHHHHHHH
Confidence 111222221 11 125667899999999998888854
No 67
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=25.41 E-value=8.6e+02 Score=26.06 Aligned_cols=23 Identities=22% Similarity=0.240 Sum_probs=17.5
Q ss_pred HHHHhhhHHHHhcCCCccHHHHhh
Q 048735 240 IEELRGRIILVAKDEQGCRFLQKK 263 (579)
Q Consensus 240 L~ei~Gki~eLa~Dq~gSr~LQ~l 263 (579)
|+| +|-+..-+.|+.-.+|++.+
T Consensus 77 LDE-rGLL~~A~r~~Fi~~vveAl 99 (340)
T PF12069_consen 77 LDE-RGLLNQAARDHFIKMVVEAL 99 (340)
T ss_pred ccc-ccCcCcccHHHHHHHHHHHh
Confidence 666 77777777777777777777
No 68
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=25.27 E-value=4.1e+02 Score=29.34 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=12.7
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHH
Q 048735 258 RFLQKKVDERNPIDIEMILSEVID 281 (579)
Q Consensus 258 r~LQ~lLe~~~~e~~~~I~~ei~~ 281 (579)
..++.+++...+.+...+++++-+
T Consensus 21 ~~l~~~l~~~~~~dia~~l~~l~~ 44 (449)
T TIGR00400 21 SKIKEKFLKXQPXDIAEALKRLPG 44 (449)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCH
Confidence 344555555555555555555544
No 69
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.09 E-value=2.6e+02 Score=28.89 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=33.6
Q ss_pred CCCCCCCCCC--CCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCcccc---CcCCCCCCCCCCCCCCCCCCCC
Q 048735 104 SQFAAPRPPL--SQYLPYPIPLNQAQYSFINSLPTSFPLENHETIDLQSGF---DLQSGFEGLNIDGLGLPRPNNL 174 (579)
Q Consensus 104 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~ 174 (579)
.+|+..-|+. ++--+|+.|- .++..|.+ ++++.| ++.+---|++ ++.+-|+--..+.+..++|+.+
T Consensus 175 ~~s~d~~P~~tGp~~~syp~Py-~p~p~~q~-p~p~~p---~~~~yiS~~~S~ns~~qs~~s~s~s~~~S~pP~~p 245 (338)
T KOG0917|consen 175 DASADSLPTQTGPTQPSYPSPY-DPSPYHQD-PMPSGP---YTGIYISHEPSPNSLPQSYPSFSESSLPSTPPGAP 245 (338)
T ss_pred cccCCCCCCCCCCCCCCCCCCC-CCCCCCCC-CCCCCC---CCcceeecccCcccccccccccccccCCCCCCCCc
Confidence 3555555555 6667788776 66666666 444554 2222222222 2234455545545555555433
No 70
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=25.00 E-value=1.3e+03 Score=27.89 Aligned_cols=126 Identities=5% Similarity=0.059 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHHHhhchhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCCCchhhhhhc
Q 048735 304 NEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCL 383 (579)
Q Consensus 304 s~eq~~~I~~~l~~~~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~GnhVlQklL 383 (579)
+.+....|++.|.+-+.++.-+..-.+-..++..++..|---....++.+++...++.+...- .+ .+..-.+..+.
T Consensus 132 T~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E-gI---~id~eAL~lIA 207 (830)
T PRK07003 132 TNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE-RI---AFEPQALRLLA 207 (830)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHc-CC---CCCHHHHHHHH
Confidence 445556666666643345544444445566777777665000011224455544444333221 01 11222344444
Q ss_pred cccCccchHHHHHHHHHhhHhhccCCCchhHHHHhhhhCCHHHHHHHHHHHH
Q 048735 384 QKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVV 435 (579)
Q Consensus 384 e~~~~~~~~~Ii~~l~~~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~ 435 (579)
+...+..|..| .+.++....+........|..++-..+.+....|++.+.
T Consensus 208 ~~A~GsmRdAL--sLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~ 257 (830)
T PRK07003 208 RAAQGSMRDAL--SLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA 257 (830)
T ss_pred HHcCCCHHHHH--HHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44444444433 122222223333333334445554455555444444443
No 71
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=23.92 E-value=1.3e+03 Score=28.41 Aligned_cols=35 Identities=14% Similarity=0.057 Sum_probs=19.6
Q ss_pred HHHhhhccCCHHHHHHHHHHHHHHHHHHhcCcchh
Q 048735 259 FLQKKVDERNPIDIEMILSEVIDDLHELMRHQSAN 293 (579)
Q Consensus 259 ~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs 293 (579)
++..+|..++++.....+..+.+-...-..|+|--
T Consensus 501 fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyK 535 (1233)
T KOG1824|consen 501 FLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYK 535 (1233)
T ss_pred HHHHHHhcCChhhcccchhhhhhHHHHHhcCchHh
Confidence 44555556666655555555555555555565543
No 72
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=23.84 E-value=5e+02 Score=30.44 Aligned_cols=45 Identities=18% Similarity=-0.047 Sum_probs=25.6
Q ss_pred hhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhH
Q 048735 320 QRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNIT 366 (579)
Q Consensus 320 g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i 366 (579)
+.+..+....|.+-+--+.|..+ ....+..+.|+..+++.|...+
T Consensus 257 p~~~~l~~~~ff~D~~~~aLrfL--D~l~~kdn~qKs~Flk~Ls~~i 301 (700)
T KOG2137|consen 257 PTLDLLLSIPFFSDPGLKALRFL--DDLPQKDNSQKSSFLKGLSKLI 301 (700)
T ss_pred cchhhhhcccccCCchhhhhhhc--ccccccCcHHHHHHHHHHHHhh
Confidence 44555556666666655666665 3333445677777666554443
No 73
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair. In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.
Probab=23.49 E-value=8.3e+02 Score=25.19 Aligned_cols=18 Identities=11% Similarity=0.122 Sum_probs=9.8
Q ss_pred HHhhccHHHHHHHHHHHH
Q 048735 299 LIGVLNEEQMTKLILSVV 316 (579)
Q Consensus 299 Lle~~s~eq~~~I~~~l~ 316 (579)
++-.|++.|...+.+.+.
T Consensus 43 ~L~~csp~q~e~lc~~L~ 60 (263)
T PF11510_consen 43 FLNECSPSQVEMLCSQLQ 60 (263)
T ss_dssp GGGG--HHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHhC
Confidence 445556667766666655
No 74
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=23.37 E-value=1.2e+03 Score=26.93 Aligned_cols=165 Identities=16% Similarity=0.116 Sum_probs=0.0
Q ss_pred hHHHHHHHhhccHHHHHHHHHHHHhhchhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccC
Q 048735 293 NHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKS 372 (579)
Q Consensus 293 s~VIQkLle~~s~eq~~~I~~~l~~~~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D 372 (579)
++++.-+.+......+...-..+. |+|+.- +++-++...+++.+.. +|.+|
T Consensus 70 ~~~~~l~~~~~~~a~~~~~~~~~~--------------------k~l~~~------~l~~~~~~~~l~~~~~---~c~kd 120 (757)
T KOG4368|consen 70 QHLLALRQEQVTAAVAHAVEQQMQ--------------------KLLEET------QLDMNEFDNLLQPIID---TCTKD 120 (757)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHhc------cCCHHHHHHHHHHHHH---HHhHH
Q ss_pred CCCchhhhhhccccCccchHHHHHHHHHhhHhhccCCC----chhHHHHhhhhCCHHHHHHHHHHHHH------HHHHHh
Q 048735 373 PHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRS----GCCLLQYCIPLAQEEQKARLIADVVA------NAYVLS 442 (579)
Q Consensus 373 ~~GnhVlQklLe~~~~~~~~~Ii~~l~~~l~~La~~k~----Gs~VVQklLe~~~~~~~~~Lv~~L~~------~l~~La 442 (579)
....-----+-.+-++..++.|+..+...+.+-+.|-+ --++|..++-+|..++-..++..|.. ++.-++
T Consensus 121 ~is~~k~w~f~~~~s~~~~e~~~~~l~n~~~~~~~~~~lrlh~~ylind~~~hcqrk~~~~~~~~l~~~v~~~yc~~~~~ 200 (757)
T KOG4368|consen 121 AISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQARELLAALQKVVVPIYCTSFLA 200 (757)
T ss_pred HHHHhhhhhhhcCCCchHHHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q ss_pred hCcchhHHHHHHHhcCChhh--HHHHHHHHH------HhHHhhcCCcchHHH
Q 048735 443 EHSYGNYVVQYILGLKIPQV--TADVVAQLA------GRYFALSLGKCSSNV 486 (579)
Q Consensus 443 ~D~~GnyVIQ~iLe~~~~~~--r~~Ii~~L~------g~~~~Ls~~k~GS~V 486 (579)
.....+-.+-++|....... -+.|++.|. +...+.....||+-|
T Consensus 201 ~~e~~~~~~~~ll~~we~~~yf~ds~~~ql~~~~~~~~~~~~~~~~~y~~~~ 252 (757)
T KOG4368|consen 201 VEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQATLINEYSSVV 252 (757)
T ss_pred hHhHHHHHHHHHHHHHhhcCchhHHHHHHhhhhhhhhhhHHHHHHhhhhHHH
No 75
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=22.73 E-value=7e+02 Score=27.18 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=44.1
Q ss_pred cHHHHhhhHHHHhcCCCccHHHHhhhcc-CCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhccHH
Q 048735 239 SIEELRGRIILVAKDEQGCRFLQKKVDE-RNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEE 306 (579)
Q Consensus 239 ~L~ei~Gki~eLa~Dq~gSr~LQ~lLe~-~~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~e 306 (579)
..+.++|++.+.+.+.+=-.+.+.+-.. -.....-.++++|+..+..|. .+..-+.+-+..+.+
T Consensus 20 ~~~~~~~~vk~~~~~afWd~l~~el~~~~~~~~~~~~Ll~~ike~L~~ll----~~~~~~~I~e~LD~~ 84 (441)
T PF05794_consen 20 PEDSLEGRVKETMHKAFWDALREELEQDPPDYSRLPQLLEEIKEILLSLL----PSRLRQEIEEVLDLE 84 (441)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHhc----CHHHHHHHHHHCChH
Confidence 4677888888888877777777666666 344456678888888888777 555555555555554
No 76
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=22.20 E-value=44 Score=15.69 Aligned_cols=6 Identities=50% Similarity=0.711 Sum_probs=3.3
Q ss_pred CCCccc
Q 048735 126 AQYSFI 131 (579)
Q Consensus 126 ~~~~~~ 131 (579)
+||.|+
T Consensus 2 gpy~fg 7 (8)
T PF08261_consen 2 GPYSFG 7 (8)
T ss_pred Cccccc
Confidence 456654
No 77
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=21.61 E-value=1.4e+03 Score=27.34 Aligned_cols=42 Identities=17% Similarity=0.171 Sum_probs=24.0
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhchhhhhhhccccCCHHHHHHHHhc
Q 048735 294 HLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAG 342 (579)
Q Consensus 294 ~VIQkLle~~s~eq~~~I~~~l~~~~g~~~~La~d~~GsrVLQklLe~~ 342 (579)
.+.+.+++ .+.+.|+.....+. ..+-++..+.. .-.|.++.+
T Consensus 531 ~~~~~~~~-~~~~~rr~~~~~lq---~k~~~l~~n~~---LfeKgl~lF 572 (803)
T PLN03083 531 ERRKALFT-ENAERRRRLLDNLQ---KKIDESFLNMQ---LYEKALDLF 572 (803)
T ss_pred HHHHHHHh-cchHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHhhC
Confidence 34677777 66777777766666 55555544331 334444444
No 78
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=21.29 E-value=6.6e+02 Score=23.22 Aligned_cols=17 Identities=29% Similarity=0.218 Sum_probs=7.0
Q ss_pred chhHHHHhhhhCCHHHH
Q 048735 411 GCCLLQYCIPLAQEEQK 427 (579)
Q Consensus 411 Gs~VVQklLe~~~~~~~ 427 (579)
|+..++.++...+.++.
T Consensus 47 g~~~l~~~i~~L~~~~l 63 (141)
T PF08625_consen 47 GSEELDEVIKKLDDEQL 63 (141)
T ss_pred hHHHHHHHHHhcCHHHH
Confidence 33444444444443333
No 79
>KOG3811 consensus Transcription factor AP-2 [Transcription]
Probab=20.85 E-value=1.1e+03 Score=25.82 Aligned_cols=360 Identities=16% Similarity=0.076 Sum_probs=0.0
Q ss_pred cCCCcccccCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCcccCCCCCCCCCCCCCCCCCccccCcCCCCCCCCC
Q 048735 86 MEPSTCRCRTPESGLSRPSQFAAPRPPLSQYL--PYPIPLNQAQYSFINSLPTSFPLENHETIDLQSGFDLQSGFEGLNI 163 (579)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (579)
+--+.|.-+.++++ +|.-+--+++||.+..- ||--|-|++++...+....+-..-.+.-.++| +++.++
T Consensus 19 ~~~~~~~~~~~~~~-~~~~~~~s~~p~~~~~~~~~~qP~~~f~p~y~~~~~~~~~~~y~~~~~~~~--------~~~~~~ 89 (434)
T KOG3811|consen 19 DGASICNPSLSSLS-SRGQTLYSSAPPFSHSGVSPFQPPYYFPPPYQENGYSQSADPYSHPNMDPY--------GIPLNP 89 (434)
T ss_pred cccccCCCCcchhc-ccccCCCCCCCCCCCCCCCCcCCCCCCCCcccccccccccchhhcCCCCcc--------CCCCCc
Q ss_pred CC-CCCCCCCCCCcccCccccccccCCCCCCCCCCCCCCC----CCcCCcccCCCCCCCCcccchhhhhhhccCCCCCcc
Q 048735 164 DG-LGLPRPNNLTVQRNLVAATNRYATTNNASPSYSNLSH----GFLSDHHHLGSSTNASSRYNNFYARARHHHHRTSYS 238 (579)
Q Consensus 164 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (579)
-= ..++.+|..+.+...+..|.+ ...+.+..+.. -...-.-++.+.+++..........+-.-++...++
T Consensus 90 l~aqP~~~~g~~~~~~~~~~pp~~-----~~~~q~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~v 164 (434)
T KOG3811|consen 90 LHAQPLPWPGYRTRQGAGLLPPHR-----ALQPQLSPLDPRRDAPESDLLLTSANHGTDNSGTEQDPSTHKPPHKESDFV 164 (434)
T ss_pred cccCCCCCcCcccCCCCCcCCCCC-----CcccccCCCCCccccchhhhhhhccccCCCCCccccCccccCCcchhhccc
Q ss_pred c-----HHHHhhhHHHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHH
Q 048735 239 S-----IEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLIL 313 (579)
Q Consensus 239 ~-----L~ei~Gki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~ 313 (579)
. ........-+.-....+..-.++-.-.+.- .-..||..+-+.+.-|.+..-----|..+=+.+++-.. |-.
T Consensus 165 ~~~~p~~~~~v~~e~~~p~~~~~~~~~~k~~~~~gv-~~~eVfc~VpGRLSllsstSKYkVTVaEvqRRlspPEc--LNa 241 (434)
T KOG3811|consen 165 QNVDPKHYQTVATESDVPSNKSIPFPSNKPSPTGGV-NPNEVFCVVPGRLSLLSSTSKYKVTVAEVQRRLSPPEC--LNA 241 (434)
T ss_pred cccCccccccchhccCCCcccccccccCCCCcccCC-CCCeeEEeecCcccccccccceeeEHHHHHhhcCChhh--hhh
Q ss_pred HHHhhchhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHH---HHHHHHHhhHhHhccCCCCchhhhhhccccCccc
Q 048735 314 SVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQS---LLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDY 390 (579)
Q Consensus 314 ~l~~~~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~---~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~~~~ 390 (579)
.+. +-+..=++.+.|.+.|++.|+.. .........+.. .+...+.+..+.|++|--- --.
T Consensus 242 SlL---ggvLRRaKsKnGGr~lRe~L~k~--GlnlpagrRkaAnVT~ltsLVE~EAvHLArDf~~------------vcE 304 (434)
T KOG3811|consen 242 SLL---GGVLRRAKSKNGGRLLREKLTKI--GLNLPAGRRKAANVTLLTSLVEEEAVHLARDFGY------------VCE 304 (434)
T ss_pred Hhh---hhhhhhhhhcchHHHHHHHHHHc--CCCCcccchhhccchhhhHHHHHHHHHHHHhhhh------------hhh
Q ss_pred hHHHHHHHHHhhHhhccCCCchhHHHHhhhhCCHHHHHHHHHHHHH----------------------HHHHHhhCcchh
Q 048735 391 TKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVA----------------------NAYVLSEHSYGN 448 (579)
Q Consensus 391 ~~~Ii~~l~~~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~----------------------~l~~La~D~~Gn 448 (579)
..+=++++...+.+-....--..+.-+-+.....+....+.+.|.. .-..|++|-||+
T Consensus 305 ~efP~~~Iae~l~r~~l~~~~~~~~rk~ml~~t~q~~ke~~~lLsqdRtP~~~~rp~pll~~~lq~~lthFSLiTHGFG~ 384 (434)
T KOG3811|consen 305 TEFPARAIAEELLRKHLAPENDLDDRKNMLLATTQICKELTDLLSQDRTPLTTSRPEPLLEPSLQNHLTHFSLITHGFGS 384 (434)
T ss_pred hhccHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCchhhhhhhhhhhhhccCCc
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhHHhhcCCcchH
Q 048735 449 YVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSS 484 (579)
Q Consensus 449 yVIQ~iLe~~~~~~r~~Ii~~L~g~~~~Ls~~k~GS 484 (579)
.-+-..|. ....|++....-+..+..++.++
T Consensus 385 pa~~a~l~-----s~q~il~eal~~leK~~~~~~~~ 415 (434)
T KOG3811|consen 385 PAICAALR-----SLQNILNEALKYLEKLTEGNTLS 415 (434)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHccCCCCC
No 80
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=20.17 E-value=9.4e+02 Score=24.61 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=38.0
Q ss_pred cCCHHHHHHHH-hcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCC------CchhhhhhccccCccc
Q 048735 330 SGSRVMQKLLD-AGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPH------GNHVIKRCLQKFPPDY 390 (579)
Q Consensus 330 ~GsrVLQklLe-~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~------GnhVlQklLe~~~~~~ 390 (579)
++++++.-++. .. ........+.-+.+-+..++.|.. |..+++.+++.++...
T Consensus 95 ~~~~~l~w~v~~~~--------~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~ 154 (282)
T PF10521_consen 95 LASHVLSWIVLSQL--------DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE 154 (282)
T ss_pred ccHHHHHHHHHhcC--------CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 34568888877 55 566777777888888888888763 6667777777765544
Done!