Query 048735
Match_columns 579
No_of_seqs 253 out of 1556
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 22:00:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 100.0 1.7E-63 5.7E-68 526.0 25.4 339 215-571 2-345 (351)
2 3k49_A MRNA-binding protein PU 100.0 3.7E-61 1.3E-65 511.4 20.7 324 235-570 21-362 (369)
3 3k62_A FEM-3 mRNA-binding fact 100.0 1.1E-59 3.9E-64 505.7 24.6 323 238-571 20-405 (412)
4 3v71_A PUF (pumilio/FBF) domai 100.0 6.3E-59 2.2E-63 496.1 26.0 322 236-568 9-381 (382)
5 3bwt_A Protein PUF4; pumilio, 100.0 2.2E-59 7.6E-64 490.6 21.9 316 239-566 7-332 (333)
6 3gvo_A Pumilio 2, pumilio homo 100.0 5.8E-42 2E-46 361.4 20.3 282 239-533 56-344 (351)
7 3k49_A MRNA-binding protein PU 100.0 4.7E-42 1.6E-46 364.5 13.4 303 255-571 3-326 (369)
8 3bwt_A Protein PUF4; pumilio, 100.0 5.5E-40 1.9E-44 343.6 21.5 281 274-570 6-296 (333)
9 3v71_A PUF (pumilio/FBF) domai 100.0 1.2E-38 4.1E-43 339.6 18.5 285 276-571 13-329 (382)
10 3k62_A FEM-3 mRNA-binding fact 100.0 5.7E-37 1.9E-41 329.4 22.8 281 280-571 28-349 (412)
11 2ilr_A Protein FACE, fanconi a 78.0 49 0.0017 32.6 14.6 157 259-444 40-214 (264)
12 3hjl_A Flagellar motor switch 68.4 1.1E+02 0.0036 31.1 17.9 28 481-508 197-224 (329)
13 2of3_A ZYG-9; multifunctional 52.2 1.8E+02 0.0061 28.5 18.5 51 487-546 212-262 (266)
14 3u85_B Histone-lysine N-methyl 51.0 3.7 0.00013 24.0 0.3 8 12-19 2-9 (21)
15 4fhr_B Flagellar motor switch 46.3 1.1E+02 0.0037 29.1 10.0 96 259-365 7-112 (216)
16 3pkr_A FLIG, flagellar motor s 45.3 1.5E+02 0.005 29.4 11.1 156 258-425 64-229 (279)
17 3u0r_A Apoptosis inhibitor 5; 42.9 3.4E+02 0.012 29.1 14.0 184 293-491 64-266 (507)
18 2jak_A Serine/threonine-protei 40.9 3.3E+02 0.011 28.3 17.1 73 459-534 290-364 (392)
19 2fv2_A RCD1 required for cell 40.6 83 0.0028 31.0 8.2 79 260-342 126-219 (268)
20 2ilr_A Protein FACE, fanconi a 40.2 2.3E+02 0.0078 27.8 11.3 170 295-484 39-219 (264)
21 3pkr_A FLIG, flagellar motor s 40.1 1.7E+02 0.0058 29.0 10.6 25 375-399 143-167 (279)
22 1k1a_A B-cell lymphoma 3-encod 32.3 1.3E+02 0.0045 27.2 8.1 26 289-314 6-31 (241)
23 2yvy_A MGTE, Mg2+ transporter 32.3 1.2E+02 0.004 29.4 8.0 54 263-316 39-92 (278)
24 2npp_B PP2A, B subunit, serine 32.1 4.8E+02 0.016 27.5 13.7 46 486-534 307-352 (449)
25 1k1a_A B-cell lymphoma 3-encod 31.9 79 0.0027 28.8 6.5 86 251-342 4-90 (241)
26 4fhr_B Flagellar motor switch 30.7 1.7E+02 0.0057 27.8 8.5 52 386-437 57-112 (216)
27 3opb_A SWI5-dependent HO expre 28.5 2.9E+02 0.01 31.4 11.3 12 351-362 126-137 (778)
28 1b3u_A Protein (protein phosph 26.5 5.5E+02 0.019 26.5 13.0 16 276-291 201-216 (588)
29 1rf3_B 24-residue peptide from 26.4 50 0.0017 20.3 2.4 19 118-136 1-19 (26)
30 2rfa_A Transient receptor pote 26.3 2.8E+02 0.0095 24.9 9.2 87 410-499 120-213 (232)
31 2f8y_A Notch homolog 1, transl 24.3 1.5E+02 0.0051 26.5 6.8 82 253-342 22-103 (223)
32 3aji_A 26S proteasome non-ATPa 21.9 3.5E+02 0.012 24.1 9.0 186 290-502 4-191 (231)
33 1b3u_A Protein (protein phosph 21.1 6.9E+02 0.024 25.7 13.2 13 278-290 242-254 (588)
34 3u0r_A Apoptosis inhibitor 5; 20.9 7.9E+02 0.027 26.3 19.1 178 380-567 68-267 (507)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=1.7e-63 Score=526.04 Aligned_cols=339 Identities=26% Similarity=0.449 Sum_probs=321.3
Q ss_pred CCCCcccchhhhhhhccCCCCCcccHHHHhhhHHHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcCcchhH
Q 048735 215 TNASSRYNNFYARARHHHHRTSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANH 294 (579)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~L~ei~Gki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs~ 294 (579)
+.++..|++|++. +..-..|+|++|+++++|+||+|||+||++|+.+++++++.||+++.+++.+||+|+||||
T Consensus 2 ~~~~~l~e~~r~~------~~~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~ 75 (351)
T 3gvo_A 2 TGRSRLLEDFRNN------RFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNY 75 (351)
T ss_dssp -CCCHHHHHHHTT------CCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHH
T ss_pred CCccHHHHHHhCC------CCCCcCHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhH
Confidence 4566777776543 2333579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhhchhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCC
Q 048735 295 LIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPH 374 (579)
Q Consensus 295 VIQkLle~~s~eq~~~I~~~l~~~~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~ 374 (579)
||||++++++++++..|++.+. |++.+|+.|+|||||||++++.+ ..+++..+++++.+++..|+.|++
T Consensus 76 vvQklle~~~~~~~~~i~~~i~---g~~~~l~~~~~G~rvvQk~le~~--------~~~~~~~i~~el~~~~~~L~~d~~ 144 (351)
T 3gvo_A 76 VIQKFFEFGSLDQKLALATRIR---GHVLPLALQMYGCRVIQKALESI--------SSDQQSEMVKELDGHVLKCVKDQN 144 (351)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHT---TCHHHHHTSTTHHHHHHHHHHHS--------CHHHHHHHHGGGTTCHHHHHHSTT
T ss_pred HHHHHHhhCCHHHHHHHHHHHH---hhHHHHhhCHHhHHHHHHHHHhC--------CHHHHHHHHHHhhhhHHHHHHhhh
Confidence 9999999999999999999999 99999999999999999999999 688889999999999999999999
Q ss_pred CchhhhhhccccCccchHHHHHHHHHhhHhhccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHH
Q 048735 375 GNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYI 454 (579)
Q Consensus 375 GnhVlQklLe~~~~~~~~~Ii~~l~~~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~i 454 (579)
||||+|+++++++++.+.+|++.+.+++..+++|+|||+|||++|+.++++++..|++++.+++..|++|+|||||||++
T Consensus 145 Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~ 224 (351)
T 3gvo_A 145 GNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHV 224 (351)
T ss_dssp HHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHH
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChhhHHHHHHHHHHhHHhhcCCcchHHHHHHHHhhcCHHHHHHHHHHHhCh-----hhHHHhhcCcChHHHHHHHH
Q 048735 455 LGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRH-----PEIVQLILDPYGNYVIQTAW 529 (579)
Q Consensus 455 Le~~~~~~r~~Ii~~L~g~~~~Ls~~k~GS~VVEk~L~~a~~~~r~~Ii~eL~~~-----~~l~~L~~d~~GnyVVQklL 529 (579)
|+.++++.+..|++.+.+++..||+|||||+|||+||+++++++|+.|+++++.. +.+..|+.|+|||||||++|
T Consensus 225 l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L 304 (351)
T 3gvo_A 225 LEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMI 304 (351)
T ss_dssp HHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHH
T ss_pred HHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999962 26999999999999999999
Q ss_pred hcCCcHHHHHHHHHHHHhhHHHHhhCCchHHHHHHHHhcccc
Q 048735 530 DVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKVRGNKNR 571 (579)
Q Consensus 530 ~~~~~~~~re~Ll~~L~~~l~~L~~~~~G~~Vv~kl~~~~~~ 571 (579)
+.+++ ++|+.|+++|++++..|++++||++|++++++...+
T Consensus 305 ~~~~~-~~r~~i~~~i~~~~~~L~~~~~g~~i~~kl~~~~~~ 345 (351)
T 3gvo_A 305 DMAEP-AQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYYLK 345 (351)
T ss_dssp HHCCH-HHHHHHHHHHGGGHHHHTTSTTTHHHHHHHHHHTC-
T ss_pred HhCCH-HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhh
Confidence 99998 899999999999999999999999999999987653
No 2
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=3.7e-61 Score=511.40 Aligned_cols=324 Identities=25% Similarity=0.377 Sum_probs=307.3
Q ss_pred CCcccHHHHhhhHHHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHHH
Q 048735 235 TSYSSIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILS 314 (579)
Q Consensus 235 ~~~~~L~ei~Gki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~ 314 (579)
.+...|+++.|+++++|+|++|||+||++|+.+++++++.|++|+.+++.+||+|+||||||||+|++++++++..|++.
T Consensus 21 ~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~ 100 (369)
T 3k49_A 21 NSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQ 100 (369)
T ss_dssp --CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHH
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCCCchhhhhhccccCccchHHH
Q 048735 315 VVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDL 394 (579)
Q Consensus 315 l~~~~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~~~~~~~I 394 (579)
+. |++.+|+.|+|||+|||++++.+ +++++..+++++.+++..|+.|++||||+|++++.++++.+.+|
T Consensus 101 ~~---g~~~~L~~~~~G~rVlQk~le~~--------~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i 169 (369)
T 3k49_A 101 FK---GNMKQLSLQMYACRVIQKALEYI--------DSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFI 169 (369)
T ss_dssp HT---TCHHHHHHSTTHHHHHHHHHHHS--------CHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHH
T ss_pred Hh---hhHHHHhcChhhHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHH
Confidence 99 99999999999999999999999 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHhhccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCChhh------HHHHHH
Q 048735 395 LEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQV------TADVVA 468 (579)
Q Consensus 395 i~~l~~~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~~~------r~~Ii~ 468 (579)
++.+.+++..++.|++||+|+|+|++.++++++..|++++.+++..|++|+|||||||++|+.+++.. +..|++
T Consensus 170 ~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~~~~~~i~~ 249 (369)
T 3k49_A 170 LSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIE 249 (369)
T ss_dssp HHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998865 578999
Q ss_pred HHHHhHHhhcCCcchHHHHHHHHhhcCHHHHHHHHHHHhCh-----------hhHHHhhcCcChHHHHHHHHhcCCcHHH
Q 048735 469 QLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRH-----------PEIVQLILDPYGNYVIQTAWDVSQGRRI 537 (579)
Q Consensus 469 ~L~g~~~~Ls~~k~GS~VVEk~L~~a~~~~r~~Ii~eL~~~-----------~~l~~L~~d~~GnyVVQklL~~~~~~~~ 537 (579)
.+.+++.+|+++||||+|||+||+.+++++|+.|+++|+.. +.+..|+.|+|||||||++|+.+++ .+
T Consensus 250 ~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~~-~~ 328 (369)
T 3k49_A 250 TVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEG-EG 328 (369)
T ss_dssp HHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCCH-HH
T ss_pred HHHHHHHHHHhhhHhhHHHHHHHHhCCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHHHhCCH-HH
Confidence 99999999999999999999999999999999999999863 2588999999999999999999999 89
Q ss_pred HHHHHHHHHhhHHHHhh-CCchHHHHHHHHhccc
Q 048735 538 RQTLYDLVVDNSPFLQS-HMYGKNVLAKVRGNKN 570 (579)
Q Consensus 538 re~Ll~~L~~~l~~L~~-~~~G~~Vv~kl~~~~~ 570 (579)
++.|+++|++++.+|+. ++||+++++++++...
T Consensus 329 ~~~l~~~i~p~l~~L~~~~~~G~~~~~~~e~~~~ 362 (369)
T 3k49_A 329 KKLIVIAIRAYLDKLNKSNSLGNRHLASVEKLAA 362 (369)
T ss_dssp HHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCcchHHHHHHHHHH
Confidence 99999999999999987 5999999998887654
No 3
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=1.1e-59 Score=505.72 Aligned_cols=323 Identities=23% Similarity=0.354 Sum_probs=297.0
Q ss_pred ccHHHH--hhhHHHHhcCCCccHHHHhhhccC-CHHHHHHHHHHHHHH---HHHHhcCcchhHHHHHHHhhccH------
Q 048735 238 SSIEEL--RGRIILVAKDEQGCRFLQKKVDER-NPIDIEMILSEVIDD---LHELMRHQSANHLIQKLIGVLNE------ 305 (579)
Q Consensus 238 ~~L~ei--~Gki~eLa~Dq~gSr~LQ~lLe~~-~~e~~~~I~~ei~~~---~~~L~~D~~Gs~VIQkLle~~s~------ 305 (579)
.+|.++ +|+++++|+||+|||+||++|+.+ ++++++.||+|+.++ +.+||+|+||||||||+++++++
T Consensus 20 ~~L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~ 99 (412)
T 3k62_A 20 LSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGY 99 (412)
T ss_dssp CCHHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTH
T ss_pred CcHHHHHhCCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCccccccc
Confidence 368888 799999999999999999999997 899999999999874 89999999999999999999999
Q ss_pred -HHHHHHHHHHHhhchhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHH--HhhHhHhccCCCCchhhhhh
Q 048735 306 -EQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSAL--KNITVSLSKSPHGNHVIKRC 382 (579)
Q Consensus 306 -eq~~~I~~~l~~~~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL--~~~i~~L~~D~~GnhVlQkl 382 (579)
+++..|++.+. |++.+|+.|++||||||++++.+ +.+++..+++++ .+++..|++|++||||+|+|
T Consensus 100 ~~q~~~i~~~l~---g~v~~L~~~~~GsrvvQk~le~~--------~~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~ 168 (412)
T 3k62_A 100 TKRQEKLKNFIS---SQMTDMCLDKFACRVIQSSLQNM--------DLSLACKLVQALPRDARLIAICVDQNANHVIQKV 168 (412)
T ss_dssp HHHHHHHHHHHH---HTHHHHHHSTTHHHHHHHHHHHS--------CHHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHcChhhhHHHHHHHHhC--------CHHHHHHHHHHHhccccHHHHHhCccccHHHHHH
Confidence 99999999999 99999999999999999999999 688999999999 68999999999999999999
Q ss_pred ccccCccchHHHHHHHH--HhhHhhccCCCchhHHHHhhhhCC------------HHHHH----HHHHHHHHHHHHHhhC
Q 048735 383 LQKFPPDYTKDLLEEIA--ENCLDLATDRSGCCLLQYCIPLAQ------------EEQKA----RLIADVVANAYVLSEH 444 (579)
Q Consensus 383 Le~~~~~~~~~Ii~~l~--~~l~~La~~k~Gs~VVQklLe~~~------------~~~~~----~Lv~~L~~~l~~La~D 444 (579)
++.++++.+++|++.+. +++.++++|+|||+|||+||+.++ .+++. .|++++..++..|++|
T Consensus 169 Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~d 248 (412)
T 3k62_A 169 VAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATN 248 (412)
T ss_dssp HHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999998 599999999999999999999986 24444 4677777888999999
Q ss_pred cchhHHHHHHHhcCChhh-HHHHHH-HHHHhHHhhcCCcchHHHHHHHHhhcCHHHHHHHHHHHhCh---------hhHH
Q 048735 445 SYGNYVVQYILGLKIPQV-TADVVA-QLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRH---------PEIV 513 (579)
Q Consensus 445 ~~GnyVIQ~iLe~~~~~~-r~~Ii~-~L~g~~~~Ls~~k~GS~VVEk~L~~a~~~~r~~Ii~eL~~~---------~~l~ 513 (579)
+|||||||++|+.+.+.. +..|++ .+.+++++||++||||+||||||++++++.|..|++||+.. +.+.
T Consensus 249 q~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ii~ei~~~~~~~~~~~~~~l~ 328 (412)
T 3k62_A 249 EYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTGKDALD 328 (412)
T ss_dssp TTTHHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHSSCCCTTTCCCHHH
T ss_pred ccccHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCCHHHHHHHHHHHHhhccCCccccchHHH
Confidence 999999999999988764 778887 59999999999999999999999999999999999999841 2699
Q ss_pred HhhcCcChHHHHHHHHhcCCcH-------------------HHHHHHHHHHHhhHHHHhhCCchHHHHHHHHhcccc
Q 048735 514 QLILDPYGNYVIQTAWDVSQGR-------------------RIRQTLYDLVVDNSPFLQSHMYGKNVLAKVRGNKNR 571 (579)
Q Consensus 514 ~L~~d~~GnyVVQklL~~~~~~-------------------~~re~Ll~~L~~~l~~L~~~~~G~~Vv~kl~~~~~~ 571 (579)
.|+.|+|||||||++|+.+++. .+++.|+.+++++...|++++|||+|++++.+....
T Consensus 329 ~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~~~~~Gk~i~~~l~~~~~~ 405 (412)
T 3k62_A 329 IMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLSRFSSGKKMIETLANLRST 405 (412)
T ss_dssp HHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHTTSHHHHHHHHHHHHHHC-
T ss_pred HHhcCCchHHHHHHHHHHccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHhhcc
Confidence 9999999999999999999762 147899999999999999999999999999886543
No 4
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=6.3e-59 Score=496.08 Aligned_cols=322 Identities=21% Similarity=0.350 Sum_probs=293.0
Q ss_pred CcccHHHH--hhhHHHHhcCCCccHHHHhhhccCCHHH-HHHHHHHHH---HHHHHHhcCcchhHHHHHHHhhccHHHHH
Q 048735 236 SYSSIEEL--RGRIILVAKDEQGCRFLQKKVDERNPID-IEMILSEVI---DDLHELMRHQSANHLIQKLIGVLNEEQMT 309 (579)
Q Consensus 236 ~~~~L~ei--~Gki~eLa~Dq~gSr~LQ~lLe~~~~e~-~~~I~~ei~---~~~~~L~~D~~Gs~VIQkLle~~s~eq~~ 309 (579)
.+.+|+++ +|+++++|+||+|||+||++|+.+++++ ++.||+++. +++.+||+|+||||||||++++++++++.
T Consensus 9 ~~~~L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~ 88 (382)
T 3v71_A 9 IFISLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQR 88 (382)
T ss_dssp --CCHHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHH
T ss_pred ccCcHHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHH
Confidence 45679999 8999999999999999999999987655 789999985 79999999999999999999999999999
Q ss_pred HHHHH-HHhhchhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHh-hHhHhccCCCCchhhhhhccccC
Q 048735 310 KLILS-VVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKN-ITVSLSKSPHGNHVIKRCLQKFP 387 (579)
Q Consensus 310 ~I~~~-l~~~~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~-~i~~L~~D~~GnhVlQklLe~~~ 387 (579)
.|+.. +. |++..|+.|+|||||||++++.+ +.+++..+++++.+ ++..|++|++||||||+|+++++
T Consensus 89 ~li~~~l~---g~v~~Ls~~~~G~rvvQk~ie~~--------~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~ 157 (382)
T 3v71_A 89 ELLRQMID---GGLLAMCKDKFACRVVQLALQKF--------DHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLP 157 (382)
T ss_dssp HHHHHHHH---TCHHHHHTSTTHHHHHHHHHHHS--------CHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSC
T ss_pred HHHHHHhc---chHHHHHhCccchHHHHHHHHHC--------CHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCC
Confidence 99887 57 99999999999999999999999 68888899999998 89999999999999999999999
Q ss_pred ccchHHHHHHHH--HhhHhhccCCCchhHHHHhhhhCCHHH-----------HHHHHHHHHHHHHHHhhCcchhHHHHHH
Q 048735 388 PDYTKDLLEEIA--ENCLDLATDRSGCCLLQYCIPLAQEEQ-----------KARLIADVVANAYVLSEHSYGNYVVQYI 454 (579)
Q Consensus 388 ~~~~~~Ii~~l~--~~l~~La~~k~Gs~VVQklLe~~~~~~-----------~~~Lv~~L~~~l~~La~D~~GnyVIQ~i 454 (579)
++.+++|++.+. +++.++++|+|||+|||+||+++++++ ...|++++.++...|++|+|||||||++
T Consensus 158 ~~~~~~Ii~~~~~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~i 237 (382)
T 3v71_A 158 VDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYV 237 (382)
T ss_dssp TTTSHHHHHHHHSTTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHH
T ss_pred HHHHHHHHHHHhcccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHH
Confidence 999999999997 699999999999999999999986432 2356777788889999999999999999
Q ss_pred HhcCCh--hhHHHHHH-HHHHhHHhhcCCcchHHHHHHHHhhcCHHHHHHHHHHHhCh---------hhHHHhhcCcChH
Q 048735 455 LGLKIP--QVTADVVA-QLAGRYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRH---------PEIVQLILDPYGN 522 (579)
Q Consensus 455 Le~~~~--~~r~~Ii~-~L~g~~~~Ls~~k~GS~VVEk~L~~a~~~~r~~Ii~eL~~~---------~~l~~L~~d~~Gn 522 (579)
|+.+++ ..+..|++ .+.+++.+||+|||||+||||||+++++++|+.|+++|+.. +.+..|+.|+|||
T Consensus 238 L~~~~~~e~~r~~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygN 317 (382)
T 3v71_A 238 IKSSGIMEMYRDTIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGN 317 (382)
T ss_dssp HTCCSTHHHHHHHHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCcc
Confidence 999875 45888997 49999999999999999999999999999999999999862 3799999999999
Q ss_pred HHHHHHHhcCCcH------------------HHHHHHHHHHHhhHHHHhhCCchHHHHHHHHhc
Q 048735 523 YVIQTAWDVSQGR------------------RIRQTLYDLVVDNSPFLQSHMYGKNVLAKVRGN 568 (579)
Q Consensus 523 yVVQklL~~~~~~------------------~~re~Ll~~L~~~l~~L~~~~~G~~Vv~kl~~~ 568 (579)
||||++|+.+++. .++++|+.++++++..|++++||++|+++|++.
T Consensus 318 yVvQ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l~~~ 381 (382)
T 3v71_A 318 YVVQQMISICTAALIGKEERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMRH 381 (382)
T ss_dssp HHHHHHHHHHHHHCC-----CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcccccccchhcccchhHHhhhhHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHhc
Confidence 9999999999861 246899999999999999999999999999874
No 5
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=2.2e-59 Score=490.63 Aligned_cols=316 Identities=34% Similarity=0.534 Sum_probs=299.3
Q ss_pred cHHHHhhhHHHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHHHHHhh
Q 048735 239 SIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSS 318 (579)
Q Consensus 239 ~L~ei~Gki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~l~~~ 318 (579)
.+++++|+++++|+||+|||+||++|+.+++++++.||+|+.+++.+||+|+|||||+||++++++++++..|++.+.
T Consensus 7 ~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~-- 84 (333)
T 3bwt_A 7 VLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISS-- 84 (333)
T ss_dssp CGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHG--
T ss_pred cHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHH--
Confidence 499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCCCchhhhhhccccCccchHHHHHHH
Q 048735 319 QQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEI 398 (579)
Q Consensus 319 ~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~~~~~~~Ii~~l 398 (579)
|++.+|+.|+|||||||++++.+ . +++++..+++++.+++..|+.|++||||+|++++.++++.+++|++.+
T Consensus 85 -~~~~~l~~~~~G~rviQ~~l~~~--~-----~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l 156 (333)
T 3bwt_A 85 -PHFVEISLNPHGTRALQKLIECI--K-----TDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAI 156 (333)
T ss_dssp -GGHHHHHHSTTHHHHHHHHHHHC--C-----SHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred -hHHHHHHhcccccHHHHHHHHhc--C-----cHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHH
Confidence 99999999999999999999998 6 788899999999999999999999999999999999999999999999
Q ss_pred HHhhHhhccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCChhh----HHHHHHHHHHhH
Q 048735 399 AENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQV----TADVVAQLAGRY 474 (579)
Q Consensus 399 ~~~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~~~----r~~Ii~~L~g~~ 474 (579)
.+++.+++.|++||+|||+|+++++++++..|++++.+++..|++|+|||||||++|+.+++.. +..|++.+.+++
T Consensus 157 ~~~~~~l~~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~ 236 (333)
T 3bwt_A 157 SDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRA 236 (333)
T ss_dssp HHSHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGH
T ss_pred HHHHHHHhcCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876643 689999999999
Q ss_pred HhhcCCcchHHHHHHHHhhcCHHHHHHHHHHHhCh---hhHHHhhcCcChHHHHHHHHhcCCcH--HHHHHHHHHHHhhH
Q 048735 475 FALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRH---PEIVQLILDPYGNYVIQTAWDVSQGR--RIRQTLYDLVVDNS 549 (579)
Q Consensus 475 ~~Ls~~k~GS~VVEk~L~~a~~~~r~~Ii~eL~~~---~~l~~L~~d~~GnyVVQklL~~~~~~--~~re~Ll~~L~~~l 549 (579)
.+|+.+||||+|||+|++.++ .++.++.+++.. +.+..|+.|+|||||||++|+.++++ .+++.|+++|++++
T Consensus 237 ~~Ls~~k~gs~Vvek~l~~~~--~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~~~~~~~~~l~~~l~p~l 314 (333)
T 3bwt_A 237 IELSIHKFGSNVIEKILKTAI--VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPLL 314 (333)
T ss_dssp HHHHTSTTHHHHHHHHHTSHH--HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHHHCHHHHHHHHHHHGGGC
T ss_pred HHHHcccHHHHHHHHHHcccc--hhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHhccCccHHHHHHHHHHHHHhc
Confidence 999999999999999999764 467888888752 48999999999999999999999863 37899999999998
Q ss_pred -HHHhhCCchHHHHHHHH
Q 048735 550 -PFLQSHMYGKNVLAKVR 566 (579)
Q Consensus 550 -~~L~~~~~G~~Vv~kl~ 566 (579)
.+|+.++|||+|++++.
T Consensus 315 ~~~lr~~~~G~~i~~~l~ 332 (333)
T 3bwt_A 315 VGPIRNTPHGKRIIGMLH 332 (333)
T ss_dssp CGGGGGSHHHHHHHTTSC
T ss_pred hhhhcCCCCHHHHHHHhc
Confidence 89999999999998763
No 6
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=5.8e-42 Score=361.44 Aligned_cols=282 Identities=19% Similarity=0.266 Sum_probs=272.8
Q ss_pred cHHHHhhhHHHHhcCCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHHHHHhh
Q 048735 239 SIEELRGRIILVAKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSS 318 (579)
Q Consensus 239 ~L~ei~Gki~eLa~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~l~~~ 318 (579)
-++|+.+++++|++|++|++++|++|+.++++++..|++++.+++.+|+.|+||++|+|++++.++.+++..|++++.
T Consensus 56 i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~-- 133 (351)
T 3gvo_A 56 VFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELD-- 133 (351)
T ss_dssp HHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGT--
T ss_pred HHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhh--
Confidence 389999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCCCchhhhhhccccCccchHHHHHHH
Q 048735 319 QQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEI 398 (579)
Q Consensus 319 ~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~~~~~~~Ii~~l 398 (579)
+++.+|++|.+|+||||++++.+ +++++..+++.+.+++..++.+++|+.|+|++++.++++.+..|++.+
T Consensus 134 -~~~~~L~~d~~Gn~ViQk~l~~~--------~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l 204 (351)
T 3gvo_A 134 -GHVLKCVKDQNGNHVVQKCIECV--------QPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEEL 204 (351)
T ss_dssp -TCHHHHHHSTTHHHHHHHHHHHS--------CGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred -hhHHHHHHhhhhhHHHHHHHHhC--------CHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHH
Confidence 99999999999999999999998 688999999999999999999999999999999999999999999999
Q ss_pred HHhhHhhccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCChhhHHHHHHHHHH------
Q 048735 399 AENCLDLATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAG------ 472 (579)
Q Consensus 399 ~~~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~~~r~~Ii~~L~g------ 472 (579)
.+++..|+.+++|++|||++|+.++++.+..|++.+.+++..|++|+||++||+++|+.+++..+..|++.+..
T Consensus 205 ~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~ 284 (351)
T 3gvo_A 205 HQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPH 284 (351)
T ss_dssp HTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTE
T ss_pred hhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -hHHhhcCCcchHHHHHHHHhhcCHHHHHHHHHHHhChhhHHHhhcCcChHHHHHHHHhcCC
Q 048735 473 -RYFALSLGKCSSNVVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQ 533 (579)
Q Consensus 473 -~~~~Ls~~k~GS~VVEk~L~~a~~~~r~~Ii~eL~~~~~l~~L~~d~~GnyVVQklL~~~~ 533 (579)
.+..|+.|+||++||+++|+.+++++|..|++.+.+ ++..|..++||+.|+.++-...-
T Consensus 285 ~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~~--~~~~L~~~~~g~~i~~kl~~~~~ 344 (351)
T 3gvo_A 285 SALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRP--HITTLRKYTYGKHILAKLEKYYL 344 (351)
T ss_dssp EHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHGG--GHHHHTTSTTTHHHHHHHHHHTC
T ss_pred hHHHHccCCcchHHHHHHHHHhCCHHHHHHHHHHHHH--HHHHHhcCCchHHHHHHHHHHHh
Confidence 789999999999999999999999999999999999 99999999999999998866543
No 7
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=4.7e-42 Score=364.53 Aligned_cols=303 Identities=17% Similarity=0.269 Sum_probs=281.2
Q ss_pred CccHHHHhhhccC--CHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHHHHHhhchhhhhhhccccCC
Q 048735 255 QGCRFLQKKVDER--NPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGS 332 (579)
Q Consensus 255 ~gSr~LQ~lLe~~--~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~l~~~~g~~~~La~d~~Gs 332 (579)
+.|++|+.+.... +..++...++++.+++.+|+.|++|+++||++++.++++++..|++++. +++.+|++|.||+
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~---~~~~~L~~d~~gn 79 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIR---DDAIELSNDVFGN 79 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHG---GGHHHHHHSTTTH
T ss_pred CcchhHHHHhCCCCccccccceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHH---HHHHHHhhCcccc
Confidence 4688999988876 3478999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCCCchhhhhhccccCccchHHHHHHHHHhhHhhccCCCch
Q 048735 333 RVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGC 412 (579)
Q Consensus 333 rVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~~~~~~~Ii~~l~~~l~~La~~k~Gs 412 (579)
|||||+++.+ +++++..+++++.+++..|+.|++|++|+|++++.+.++.+..|++++.+++..|+.|++|+
T Consensus 80 ~vvQkll~~~--------~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn 151 (369)
T 3k49_A 80 YVIQKFFEFG--------SKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGN 151 (369)
T ss_dssp HHHHHHHHHC--------CHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHH
T ss_pred cHHHHHHHhC--------CHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 9999999999 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCChhhHHHHHHHHHHhHHhhcCCcchHHHHHHHHh
Q 048735 413 CLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLL 492 (579)
Q Consensus 413 ~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~~~r~~Ii~~L~g~~~~Ls~~k~GS~VVEk~L~ 492 (579)
+|||++++.++++.+..|++.+.+++..|+.|+||+.|||++|+.+.++.+..|++.+.+++..|+.|+||++||+++++
T Consensus 152 ~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~ 231 (369)
T 3k49_A 152 HVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQ 231 (369)
T ss_dssp HHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHT
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHH------HHHHHHHHhChhhHHHhhcCcChHHHHHHHHhcCCcHHHHHHHHHHHHh-------------hHHHHh
Q 048735 493 ESGEEQ------STGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVD-------------NSPFLQ 553 (579)
Q Consensus 493 ~a~~~~------r~~Ii~eL~~~~~l~~L~~d~~GnyVVQklL~~~~~~~~re~Ll~~L~~-------------~l~~L~ 553 (579)
.++++. +..|++.+.+ ++.+|++|+||+.||++||+.++. ++|+.|+++|.+ .+..|.
T Consensus 232 ~~~~~~~~~~~~~~~i~~~l~~--~~~~Ls~~k~gS~Vvek~l~~~~~-~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~ 308 (369)
T 3k49_A 232 QDQFTNKEMVDIKQEIIETVAN--NVVEYSKHKFASNVVEKSILYGSK-NQKDLIISKILPRDKNHALNLEDDSPMILMI 308 (369)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHT--THHHHHTSTTHHHHHHHHHHHSCH-HHHHHHHTTTSCSSHHHHHTCCTTSHHHHHH
T ss_pred cCCchhhhhHhHHHHHHHHHHH--HHHHHHhhhHhhHHHHHHHHhCCH-HHHHHHHHHHhccccccccccccccHHHHHH
Confidence 998764 6789999999 999999999999999999999988 899999999864 367899
Q ss_pred hCCchHHHHHHHHhcccc
Q 048735 554 SHMYGKNVLAKVRGNKNR 571 (579)
Q Consensus 554 ~~~~G~~Vv~kl~~~~~~ 571 (579)
.++||..|+++++..+..
T Consensus 309 ~D~~gNyViq~~l~~~~~ 326 (369)
T 3k49_A 309 KDQFANYVIQKLVNVSEG 326 (369)
T ss_dssp TSTTHHHHHHHHHHHCCH
T ss_pred hCcchHHHHHHHHHhCCH
Confidence 999999999999987653
No 8
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=5.5e-40 Score=343.56 Aligned_cols=281 Identities=18% Similarity=0.293 Sum_probs=262.7
Q ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHHHHHhhchhhhhhhccccCCHHHHHHHHhcCCCCccCCCHH
Q 048735 274 MILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQE 353 (579)
Q Consensus 274 ~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~l~~~~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~e 353 (579)
.+++++.+++.+|+.|++||++||++++.++++++..|++++. +++.+|++|.||++||||+++.+ +++
T Consensus 6 ~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~---~~~~~L~~d~~gn~vvQkll~~~--------~~~ 74 (333)
T 3bwt_A 6 AVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETK---DYTVELMTDSFGNYLIQKLLEEV--------TTE 74 (333)
T ss_dssp CCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHG---GGHHHHHTSTTHHHHHHHHHHHS--------CHH
T ss_pred CcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHH---HHHHHHhcCcccHHHHHHHHhhC--------CHH
Confidence 4678899999999999999999999999999999999999999 99999999999999999999999 799
Q ss_pred HHHHHHHHHHhhHhHhccCCCCchhhhhhccccC-ccchHHHHHHHHHhhHhhccCCCchhHHHHhhhhCCHHHHHHHHH
Q 048735 354 QQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFP-PDYTKDLLEEIAENCLDLATDRSGCCLLQYCIPLAQEEQKARLIA 432 (579)
Q Consensus 354 q~~~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~-~~~~~~Ii~~l~~~l~~La~~k~Gs~VVQklLe~~~~~~~~~Lv~ 432 (579)
++..+++++.+++.+++.|++|++|+|+++++++ ++.+..|++++.+++..++.+++|++|+|++++..+++.+..|++
T Consensus 75 ~~~~i~~~~~~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~ 154 (333)
T 3bwt_A 75 QRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFD 154 (333)
T ss_dssp HHHHHHHHHGGGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHH
Confidence 9999999999999999999999999999999985 456778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCcchhHHHHHHHhcCChhhHHHHHHHHHHhHHhhcCCcchHHHHHHHHhhcCHHH----HHHHHHHHhC
Q 048735 433 DVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCLLESGEEQ----STGIINEIIR 508 (579)
Q Consensus 433 ~L~~~l~~La~D~~GnyVIQ~iLe~~~~~~r~~Ii~~L~g~~~~Ls~~k~GS~VVEk~L~~a~~~~----r~~Ii~eL~~ 508 (579)
.+.+++..|++|++|++|||++++.++++.+..|++.+.+++..|+.|+||++||+++++.++++. ++.|++.+.+
T Consensus 155 ~l~~~~~~l~~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~ 234 (333)
T 3bwt_A 155 AISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKP 234 (333)
T ss_dssp HHHHSHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGG
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887653 6899999988
Q ss_pred hhhHHHhhcCcChHHHHHHHHhcCCcHHHHHHHHHHHH-----hhHHHHhhCCchHHHHHHHHhccc
Q 048735 509 HPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVV-----DNSPFLQSHMYGKNVLAKVRGNKN 570 (579)
Q Consensus 509 ~~~l~~L~~d~~GnyVVQklL~~~~~~~~re~Ll~~L~-----~~l~~L~~~~~G~~Vv~kl~~~~~ 570 (579)
++.+|+.++||++||+++|+... .++.++.++. +++..|+.++||..|+++++..+.
T Consensus 235 --~~~~Ls~~k~gs~Vvek~l~~~~---~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~ 296 (333)
T 3bwt_A 235 --RAIELSIHKFGSNVIEKILKTAI---VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISH 296 (333)
T ss_dssp --GHHHHHTSTTHHHHHHHHHTSHH---HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred --HHHHHHcccHHHHHHHHHHcccc---hhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHhcc
Confidence 99999999999999999999754 3566777765 578999999999999999987664
No 9
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=1.2e-38 Score=339.64 Aligned_cols=285 Identities=17% Similarity=0.263 Sum_probs=255.7
Q ss_pred HHHH--HHHHHHHhcCcchhHHHHHHHhhccHH-HHHHHHHHHHhhchhhhhhhccccCCHHHHHHHHhcCCCCccCCCH
Q 048735 276 LSEV--IDDLHELMRHQSANHLIQKLIGVLNEE-QMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQ 352 (579)
Q Consensus 276 ~~ei--~~~~~~L~~D~~Gs~VIQkLle~~s~e-q~~~I~~~l~~~~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~ 352 (579)
+.++ .+++.++|.|++||++||+.++.++++ .+..|++++....+++.+|++|.||++||||+++.+ ++
T Consensus 13 L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~--------~~ 84 (382)
T 3v71_A 13 LEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELA--------TP 84 (382)
T ss_dssp HHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTC--------CH
T ss_pred HHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhC--------CH
Confidence 4556 589999999999999999999999754 578899988643478999999999999999999999 68
Q ss_pred HHHHHHHHH-HHhhHhHhccCCCCchhhhhhccccCccchHHHHHHHHH-hhHhhccCCCchhHHHHhhhhCCHHHHHHH
Q 048735 353 EQQSLLVSA-LKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEIAE-NCLDLATDRSGCCLLQYCIPLAQEEQKARL 430 (579)
Q Consensus 353 eq~~~l~~e-L~~~i~~L~~D~~GnhVlQklLe~~~~~~~~~Ii~~l~~-~l~~La~~k~Gs~VVQklLe~~~~~~~~~L 430 (579)
+++..++.. +.+++..|+.|++|++|+|+++++++.+.+..|++++.+ ++..++.|++|++|||+||+..+.+.+..|
T Consensus 85 ~~~~~li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~I 164 (382)
T 3v71_A 85 AEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFF 164 (382)
T ss_dssp HHHHHHHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHH
T ss_pred HHHHHHHHHHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHH
Confidence 887777776 579999999999999999999999998889999999998 899999999999999999999999999999
Q ss_pred HHHHH--HHHHHHhhCcchhHHHHHHHhcCChhh-------H----HHHHHHHHHhHHhhcCCcchHHHHHHHHhhcCH-
Q 048735 431 IADVV--ANAYVLSEHSYGNYVVQYILGLKIPQV-------T----ADVVAQLAGRYFALSLGKCSSNVVQKCLLESGE- 496 (579)
Q Consensus 431 v~~L~--~~l~~La~D~~GnyVIQ~iLe~~~~~~-------r----~~Ii~~L~g~~~~Ls~~k~GS~VVEk~L~~a~~- 496 (579)
++.+. +++..|++|+||++|||++|+.+.+.. + ..|++.+.+++..|+.|+||++||+++|+.++.
T Consensus 165 i~~~~~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~ 244 (382)
T 3v71_A 165 VHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIM 244 (382)
T ss_dssp HHHHHSTTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTH
T ss_pred HHHHhcccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCc
Confidence 99997 699999999999999999999876543 2 346677778889999999999999999999764
Q ss_pred -HHHHHHHHH-HhChhhHHHhhcCcChHHHHHHHHhcCCcHHHHHHHHHHHHh-----------hHHHHhhCCchHHHHH
Q 048735 497 -EQSTGIINE-IIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVD-----------NSPFLQSHMYGKNVLA 563 (579)
Q Consensus 497 -~~r~~Ii~e-L~~~~~l~~L~~d~~GnyVVQklL~~~~~~~~re~Ll~~L~~-----------~l~~L~~~~~G~~Vv~ 563 (579)
+.|..|+.+ +.+ ++..|+.|+||++||++||..+++ ++|+.|+++|.. .+..|..++||..||+
T Consensus 245 e~~r~~ii~~~l~~--~~~~Ls~~k~gS~Vvek~l~~~~~-~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ 321 (382)
T 3v71_A 245 EMYRDTIIDKCLLR--NLLSMSQDKYASHVIEGAFLFAPP-ALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQ 321 (382)
T ss_dssp HHHHHHHHHHTTTT--CHHHHTTSTTHHHHHHHHHHHCCH-HHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHhcCchHhHHHHHHHHhCCH-HHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHH
Confidence 468999986 777 999999999999999999999998 899999999974 6889999999999999
Q ss_pred HHHhcccc
Q 048735 564 KVRGNKNR 571 (579)
Q Consensus 564 kl~~~~~~ 571 (579)
+++..+..
T Consensus 322 ~~L~~~~~ 329 (382)
T 3v71_A 322 QMISICTA 329 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHccc
Confidence 99998763
No 10
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=5.7e-37 Score=329.35 Aligned_cols=281 Identities=14% Similarity=0.232 Sum_probs=255.6
Q ss_pred HHHHHHHhcCcchhHHHHHHHhhc-cHHHHHHHHHHHHhhchhhhhhhccccCCHHHHHHHHhcCCCCccCCCH------
Q 048735 280 IDDLHELMRHQSANHLIQKLIGVL-NEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQ------ 352 (579)
Q Consensus 280 ~~~~~~L~~D~~Gs~VIQkLle~~-s~eq~~~I~~~l~~~~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~------ 352 (579)
.+++.+++.|++|+++||++++.+ +++++..|++++....+.+.+|++|.||++||||+++.+ ++
T Consensus 28 ~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~--------~~~~~~~~ 99 (412)
T 3k62_A 28 SGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGIS--------LATNDDGY 99 (412)
T ss_dssp HTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHH--------HHCCSTTH
T ss_pred CCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhC--------Cccccccc
Confidence 689999999999999999999997 899999999999811124899999999999999999999 67
Q ss_pred -HHHHHHHHHHHhhHhHhccCCCCchhhhhhccccCccchHHHHHHH--HHhhHhhccCCCchhHHHHhhhhCCHHHHHH
Q 048735 353 -EQQSLLVSALKNITVSLSKSPHGNHVIKRCLQKFPPDYTKDLLEEI--AENCLDLATDRSGCCLLQYCIPLAQEEQKAR 429 (579)
Q Consensus 353 -eq~~~l~~eL~~~i~~L~~D~~GnhVlQklLe~~~~~~~~~Ii~~l--~~~l~~La~~k~Gs~VVQklLe~~~~~~~~~ 429 (579)
+++..+++.+.+++.+|+.|++|++|+|++++.++.+.+..|++++ .+++..|+.|++|++|||+||+.++++.+..
T Consensus 100 ~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~ 179 (412)
T 3k62_A 100 TKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEF 179 (412)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCCHHHHHH
Confidence 8899999999999999999999999999999999999999999999 6899999999999999999999999999999
Q ss_pred HHHHHH--HHHHHHhhCcchhHHHHHHHhcCChh------------hHH----HHHHHHHHhHHhhcCCcchHHHHHHHH
Q 048735 430 LIADVV--ANAYVLSEHSYGNYVVQYILGLKIPQ------------VTA----DVVAQLAGRYFALSLGKCSSNVVQKCL 491 (579)
Q Consensus 430 Lv~~L~--~~l~~La~D~~GnyVIQ~iLe~~~~~------------~r~----~Ii~~L~g~~~~Ls~~k~GS~VVEk~L 491 (579)
|++.+. +++..|++|+||+.|||++|+.+.+. .+. .|++.+..+...|+.|+||++||+.+|
T Consensus 180 I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL 259 (412)
T 3k62_A 180 IVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIV 259 (412)
T ss_dssp HHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHH
Confidence 999998 59999999999999999999988742 343 456677788899999999999999999
Q ss_pred hhcCHH-HHHHHHHH-HhChhhHHHhhcCcChHHHHHHHHhcCCcHHHHHHHHHHHHh-----------hHHHHhhCCch
Q 048735 492 LESGEE-QSTGIINE-IIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVVD-----------NSPFLQSHMYG 558 (579)
Q Consensus 492 ~~a~~~-~r~~Ii~e-L~~~~~l~~L~~d~~GnyVVQklL~~~~~~~~re~Ll~~L~~-----------~l~~L~~~~~G 558 (579)
+.+.++ .|..|++. +.+ ++..|++++||+.||++||+.+++ +.|..|+++|.. .+..|..++||
T Consensus 260 ~~g~~~~~r~~ii~~~l~~--~~~~LS~~KfgSnVVek~L~~~~~-~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyG 336 (412)
T 3k62_A 260 SNDDLAVYRECIIEKCLMR--NLLSLSQEKFASHVVEKAFLHAPL-ELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFG 336 (412)
T ss_dssp HCGGGHHHHHHHHHHHTTT--CHHHHHTSTTHHHHHHHHHHHCCH-HHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTH
T ss_pred hcCCchhHHHHHHHHHHHH--HHHHHhcccHhHHHHHHHHHhCCH-HHHHHHHHHHHhhccCCccccchHHHHHhcCCch
Confidence 998865 48888874 777 999999999999999999999998 899999999985 38889999999
Q ss_pred HHHHHHHHhcccc
Q 048735 559 KNVLAKVRGNKNR 571 (579)
Q Consensus 559 ~~Vv~kl~~~~~~ 571 (579)
..||++++..+..
T Consensus 337 NYViQ~~L~~~~~ 349 (412)
T 3k62_A 337 NYVVQCMLTICCD 349 (412)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccc
Confidence 9999999998843
No 11
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=78.02 E-value=49 Score=32.60 Aligned_cols=157 Identities=19% Similarity=0.222 Sum_probs=76.8
Q ss_pred HHHhhhccCCHHHHHHHHHHHHH------HHHHHhcCcchhHHHHHHHhhcc---HHHHHHHHHH-HHhhchhhhhhhcc
Q 048735 259 FLQKKVDERNPIDIEMILSEVID------DLHELMRHQSANHLIQKLIGVLN---EEQMTKLILS-VVSSQQRLLRICDD 328 (579)
Q Consensus 259 ~LQ~lLe~~~~e~~~~I~~ei~~------~~~~L~~D~~Gs~VIQkLle~~s---~eq~~~I~~~-l~~~~g~~~~La~d 328 (579)
.+| +|-.+++.+.+.+++++.= -+.. +++.++.... -..-..+++. +- +++.+| .
T Consensus 40 ~l~-~L~~~sp~q~e~lc~~L~l~~lsd~~l~~---------lc~~ll~ls~dlS~~~a~v~~~~l~L---Pkil~L--~ 104 (264)
T 2ilr_A 40 ELQ-LLHECSPSQMDLLCAQLQLPQLSDLGLLR---------LCTWLLALSPDLSLSNATVLTRSLFL---GRILSL--T 104 (264)
T ss_dssp HHH-GGGGCCHHHHHHHHHHHTGGGCCHHHHHH---------HHHHHHHCSSCCCHHHHHHHHHHHHH---HHHHHC--S
T ss_pred HHH-HHHhCCHHHHHHHHHHHhhccCCHHHHHH---------HHHHHHcCCcchhhhhHHHHHHHHHH---HHHHhc--c
Confidence 444 4444999999999998852 2333 3355555432 2333344444 33 666666 6
Q ss_pred ccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCCCch---hhhhhc--cccCccchHHHHHHHHHhhH
Q 048735 329 LSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPHGNH---VIKRCL--QKFPPDYTKDLLEEIAENCL 403 (579)
Q Consensus 329 ~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~Gnh---VlQklL--e~~~~~~~~~Ii~~l~~~l~ 403 (579)
.-++|++..++..+ -...-..+++.+..=+.. ....|++ ++.+++ ++++++.+..++..+ .
T Consensus 105 ~~ASR~L~sal~~f--------~k~~p~a~~~all~PLL~--~~~~g~~Q~eLi~rlik~e~l~p~~~~lll~~i----L 170 (264)
T 2ilr_A 105 SSASRLLTTALTSF--------AAKYTYPVCSALLDPVLQ--APGTGPAQTELLCCLVKMESLEPDAQVLMLGQI----L 170 (264)
T ss_dssp SCCCHHHHHHHHHH--------HHHSHHHHHHHHHHHHHH--STTCCHHHHHHHHHHHHCTTSCHHHHHHHHHHH----H
T ss_pred CcchhHHHHHHHHH--------HHhCcHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHH----H
Confidence 77888876555544 123333344433321111 1222322 555555 345555555444433 2
Q ss_pred hhccCCCchhHHHHhhhhC---CHHHHHHHHHHHHHHHHHHhhC
Q 048735 404 DLATDRSGCCLLQYCIPLA---QEEQKARLIADVVANAYVLSEH 444 (579)
Q Consensus 404 ~La~~k~Gs~VVQklLe~~---~~~~~~~Lv~~L~~~l~~La~D 444 (579)
++.-+..-..|+|.+++.. +.+....++..+.+....++++
T Consensus 171 ~l~WtE~~~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~~skS 214 (264)
T 2ilr_A 171 ELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATTS 214 (264)
T ss_dssp HSCCCHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHC-----CCS
T ss_pred hccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHHhhcc
Confidence 3333334445566666532 4555555555555555555444
No 12
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=68.37 E-value=1.1e+02 Score=31.15 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=14.5
Q ss_pred cchHHHHHHHHhhcCHHHHHHHHHHHhC
Q 048735 481 KCSSNVVQKCLLESGEEQSTGIINEIIR 508 (579)
Q Consensus 481 k~GS~VVEk~L~~a~~~~r~~Ii~eL~~ 508 (579)
.-|...+-.+|...+....+.|++.|-.
T Consensus 197 ~gG~~~vA~ILN~~d~~~e~~il~~L~~ 224 (329)
T 3hjl_A 197 LEGTAVAAELLNTLDKETRELILQSIGQ 224 (329)
T ss_dssp CCHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3444555555555555555545544433
No 13
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=52.21 E-value=1.8e+02 Score=28.49 Aligned_cols=51 Identities=10% Similarity=0.051 Sum_probs=26.2
Q ss_pred HHHHHhhcCHHHHHHHHHHHhChhhHHHhhcCcChHHHHHHHHhcCCcHHHHHHHHHHHH
Q 048735 487 VQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQGRRIRQTLYDLVV 546 (579)
Q Consensus 487 VEk~L~~a~~~~r~~Ii~eL~~~~~l~~L~~d~~GnyVVQklL~~~~~~~~re~Ll~~L~ 546 (579)
|-+++.-.+...|+.-++.+.. +...+-|. |-+.+...++ +++..|-++++
T Consensus 212 ia~ll~D~d~~VR~aAl~~lve---~y~~~Gd~-----v~k~lg~L~~-~~~~~l~er~~ 262 (266)
T 2of3_A 212 VAPFVGDKDVNVRNAAINVLVA---CFKFEGDQ-----MWKAAGRMAD-KDKSLVEERIK 262 (266)
T ss_dssp HGGGGGCSSHHHHHHHHHHHHH---HHHHHTTH-----HHHHHCCCCH-HHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHH---HHHHhhHH-----HHHHHhcCCH-HHHHHHHHHHh
Confidence 4455555555666666665554 33333332 2233444555 56666666654
No 14
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=51.02 E-value=3.7 Score=23.99 Aligned_cols=8 Identities=63% Similarity=1.543 Sum_probs=6.0
Q ss_pred cccCCCCC
Q 048735 12 RWRFPPPE 19 (579)
Q Consensus 12 ~~~~~~~~ 19 (579)
|||||.-.
T Consensus 2 rwrfparp 9 (21)
T 3u85_B 2 RWRFPARP 9 (26)
T ss_pred ccccccCC
Confidence 89998643
No 15
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=46.35 E-value=1.1e+02 Score=29.11 Aligned_cols=96 Identities=8% Similarity=0.176 Sum_probs=61.8
Q ss_pred HHHhhhccCCHHHHHHHHHHHHH----HHHHHhcCcchhHHHHHHHhhc--cHHHHHHHHHHHHhhchhhhhhhcc----
Q 048735 259 FLQKKVDERNPIDIEMILSEVID----DLHELMRHQSANHLIQKLIGVL--NEEQMTKLILSVVSSQQRLLRICDD---- 328 (579)
Q Consensus 259 ~LQ~lLe~~~~e~~~~I~~ei~~----~~~~L~~D~~Gs~VIQkLle~~--s~eq~~~I~~~l~~~~g~~~~La~d---- 328 (579)
.|-.+|+...+.....|+..+.+ .+....-...-.-|+.++.... +++....|-+.+. ..+......
T Consensus 7 ~la~~l~~EhPQ~iA~iLs~L~~~~AA~VL~~Lp~~~~~ev~~Ria~l~~v~p~~~~~l~~~L~---~~l~~~~~~~~~~ 83 (216)
T 4fhr_B 7 QLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLE---KKISGFVSRTFSK 83 (216)
T ss_dssp HHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHTSCGGGHHHHHHHHHHCCCCCHHHHHHHHHHHH---HHSTTCC------
T ss_pred HHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH---HHHhccccccccc
Confidence 35567777888888888876654 3455555666667777765443 6777777777777 555544322
Q ss_pred ccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhh
Q 048735 329 LSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNI 365 (579)
Q Consensus 329 ~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~ 365 (579)
.-|...+-.++..+ ..+....+++.|...
T Consensus 84 ~gG~~~~A~IlN~~--------~~~~e~~il~~L~~~ 112 (216)
T 4fhr_B 84 VGGIDTAAEIMNNL--------DRTTEKKIMDKLVQE 112 (216)
T ss_dssp -CSHHHHHHHHHHS--------CHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHcC--------ChhHHHHHHHHHHhc
Confidence 23556777888888 567777777766654
No 16
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=45.34 E-value=1.5e+02 Score=29.43 Aligned_cols=156 Identities=11% Similarity=0.134 Sum_probs=81.4
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHH----HHHHhcCcchhHHHHHHHhhc--cHHHHHHHHHHHHhhchhhhhh---hcc
Q 048735 258 RFLQKKVDERNPIDIEMILSEVIDD----LHELMRHQSANHLIQKLIGVL--NEEQMTKLILSVVSSQQRLLRI---CDD 328 (579)
Q Consensus 258 r~LQ~lLe~~~~e~~~~I~~ei~~~----~~~L~~D~~Gs~VIQkLle~~--s~eq~~~I~~~l~~~~g~~~~L---a~d 328 (579)
..|-.+|+...+..+..|+..+.+. +....-...-.-|+.++.... +++....|-+.+. ..+... ...
T Consensus 64 ~~La~~l~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~r~dV~~Ria~l~~v~p~~l~~le~~L~---~~l~~~~~~~~~ 140 (279)
T 3pkr_A 64 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLE---NKLESLTSYKIE 140 (279)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHH---HHHHTCC---CC
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHHCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH---HHHHhccccccc
Confidence 3455677777777777777766552 333333444455666665433 5666666666666 444333 344
Q ss_pred ccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccCCC-CchhhhhhccccCccchHHHHHHHHHhhHhhcc
Q 048735 329 LSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKSPH-GNHVIKRCLQKFPPDYTKDLLEEIAENCLDLAT 407 (579)
Q Consensus 329 ~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D~~-GnhVlQklLe~~~~~~~~~Ii~~l~~~l~~La~ 407 (579)
.-|...+-.++..+ .......+++.|...=.+++..-- -=|+...++ .++....+.|++.+-...+.+|.
T Consensus 141 ~gG~~~vA~ILN~~--------d~~~e~~iL~~L~~~dpelAe~Ir~~MF~FeDl~-~lddr~iq~llreV~~~~L~~AL 211 (279)
T 3pkr_A 141 VGGLRAVAEIFNRL--------GQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIV-KLDNFAIREILKVADKKDLSLAL 211 (279)
T ss_dssp CCSHHHHHHHHHTS--------CHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGGG-GSCHHHHHHHHHHSCHHHHHHHT
T ss_pred cCcHHHHHHHHHcC--------ChHHHHHHHHHHHhhCHHHHHHHHHhccCHHHHh-cCCHHHHHHHHHhCCHHHHHHHH
Confidence 55667888888888 577777777777654322221110 012333333 33444555555555444444433
Q ss_pred CCCchhHHHHhhhhCCHH
Q 048735 408 DRSGCCLLQYCIPLAQEE 425 (579)
Q Consensus 408 ~k~Gs~VVQklLe~~~~~ 425 (579)
.-..--+-+++|...+..
T Consensus 212 KGa~~elrekil~nmS~R 229 (279)
T 3pkr_A 212 KTSTKDLTDKFLNNMSSR 229 (279)
T ss_dssp TTSCHHHHHHHHTTSCHH
T ss_pred cCCCHHHHHHHHHhcCHH
Confidence 333333444444444333
No 17
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=42.87 E-value=3.4e+02 Score=29.06 Aligned_cols=184 Identities=11% Similarity=0.040 Sum_probs=84.4
Q ss_pred hHHHHHHHhhccHHHHHHHHHHHHhhchhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHhccC
Q 048735 293 NHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSLSKS 372 (579)
Q Consensus 293 s~VIQkLle~~s~eq~~~I~~~l~~~~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L~~D 372 (579)
...+..++..|.++....=...++ .+..+|.+.+-++|+.-+...+... .+.+...+-+.|...+. .|
T Consensus 64 ~~Ai~a~lDLcEDed~~IR~qaik----~Lp~~ck~~~i~kiaDvL~QlLqtd-----d~~E~~~V~~sL~sllk---~D 131 (507)
T 3u0r_A 64 DSAINAQLDLCEDEDVSIRRQAIK----ELPQFATGENLPRVADILTQLLQTD-----DSAEFNLVNNALLSIFK---MD 131 (507)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHH----HGGGGCCTTCHHHHHHHHHHHTTCC-----CHHHHHHHHHHHHHHHH---HC
T ss_pred HHHHHHHHHHHhcccHHHHHHHHH----hhHHHhhhhhhhhHHHHHHHHHhcc-----chHHHHHHHHHHHHHHh---cC
Confidence 445666666665443332223333 6778888877777777777666222 33444443333332221 12
Q ss_pred CCCch--hhhhhccccCccchHHHHHHHHHhhHhhccCCCchh-------HHHHhhhhCCHHHHHHHHHHHHHHHHHHhh
Q 048735 373 PHGNH--VIKRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCC-------LLQYCIPLAQEEQKARLIADVVANAYVLSE 443 (579)
Q Consensus 373 ~~Gnh--VlQklLe~~~~~~~~~Ii~~l~~~l~~La~~k~Gs~-------VVQklLe~~~~~~~~~Lv~~L~~~l~~La~ 443 (579)
+.|.. +...+.. .....|..++..+...+..+-..-.+-- .+.++++-.+.+...-+++-|.. ..+..
T Consensus 132 pk~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~--lkl~~ 208 (507)
T 3u0r_A 132 AKGTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSG--LKSLQ 208 (507)
T ss_dssp HHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHT--SGGGS
T ss_pred hHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHh--ccccc
Confidence 22111 1111111 2344566677777777666555554321 23344444455555544433311 11111
Q ss_pred CcchhH-HHHHHHh---------cCChhhHHHHHHHHHHhHHhhcCCcchHHHHHHHH
Q 048735 444 HSYGNY-VVQYILG---------LKIPQVTADVVAQLAGRYFALSLGKCSSNVVQKCL 491 (579)
Q Consensus 444 D~~Gny-VIQ~iLe---------~~~~~~r~~Ii~~L~g~~~~Ls~~k~GS~VVEk~L 491 (579)
...|-- +++.+.+ ..+++..++++.++...+.-.+....++..++-++
T Consensus 209 t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~ 266 (507)
T 3u0r_A 209 TVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFC 266 (507)
T ss_dssp SHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Confidence 221111 1111111 12344566666666666666665555544444333
No 18
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=40.92 E-value=3.3e+02 Score=28.26 Aligned_cols=73 Identities=15% Similarity=0.047 Sum_probs=57.6
Q ss_pred ChhhHHHHHHHHHHhHHhhcCCcchHH--HHHHHHhhcCHHHHHHHHHHHhChhhHHHhhcCcChHHHHHHHHhcCCc
Q 048735 459 IPQVTADVVAQLAGRYFALSLGKCSSN--VVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQG 534 (579)
Q Consensus 459 ~~~~r~~Ii~~L~g~~~~Ls~~k~GS~--VVEk~L~~a~~~~r~~Ii~eL~~~~~l~~L~~d~~GnyVVQklL~~~~~ 534 (579)
++.....+++.|..++..-...|--.. -+|.+++..++++...++..|+. .+...+.+++- -|..++|...+.
T Consensus 290 Dp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~--~la~ci~S~hf-qVAErAL~~wnN 364 (392)
T 2jak_A 290 DSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFR--QLAKCVSSPHF-QVAERALYYWNN 364 (392)
T ss_dssp CGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHHHHHTCSSH-HHHHHHHGGGGC
T ss_pred CchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HHHHHHcCCcH-HHHHHHHHHhCc
Confidence 555667777777777766666665543 47899999999999999999998 78888887665 588999999988
No 19
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=40.61 E-value=83 Score=30.98 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=43.0
Q ss_pred HHhhhccCCHHHHHHHHH-HHHHHHHHHhc------CcchhHHHHHHHhhc--------cHHHHHHHHHHHHhhchhhhh
Q 048735 260 LQKKVDERNPIDIEMILS-EVIDDLHELMR------HQSANHLIQKLIGVL--------NEEQMTKLILSVVSSQQRLLR 324 (579)
Q Consensus 260 LQ~lLe~~~~e~~~~I~~-ei~~~~~~L~~------D~~Gs~VIQkLle~~--------s~eq~~~I~~~l~~~~g~~~~ 324 (579)
+-.++|..+.|.+..+++ |+.|-....|. -..+.|++||++..- +.+.+..+...+. .-+..
T Consensus 126 IgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~---~mV~~ 202 (268)
T 2fv2_A 126 IGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILG---KMVLQ 202 (268)
T ss_dssp HHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHH---HHHHH
T ss_pred HHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHH---HHHHH
Confidence 334555555555544443 56664443332 236788999987433 4555555555555 44444
Q ss_pred hhccccCCHHHHHHHHhc
Q 048735 325 ICDDLSGSRVMQKLLDAG 342 (579)
Q Consensus 325 La~d~~GsrVLQklLe~~ 342 (579)
++.+ ...|+++.++.+.
T Consensus 203 l~~~-ps~RLLKhiircY 219 (268)
T 2fv2_A 203 LSKE-PSARLLKHVVRCY 219 (268)
T ss_dssp TTTS-CCHHHHHHHHHHH
T ss_pred HhcC-CChHHHHHHHHHH
Confidence 4444 3557766666554
No 20
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=40.24 E-value=2.3e+02 Score=27.81 Aligned_cols=170 Identities=16% Similarity=0.173 Sum_probs=82.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhh---chhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHH-HHHHHHHhhHhHhc
Q 048735 295 LIQKLIGVLNEEQMTKLILSVVSS---QQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQS-LLVSALKNITVSLS 370 (579)
Q Consensus 295 VIQkLle~~s~eq~~~I~~~l~~~---~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~-~l~~eL~~~i~~L~ 370 (579)
..-+++..|++.|.+.+.+++.-. .+.+.. ..+.++... ..++-..-. .+-..+.+.+..+
T Consensus 39 ~~l~~L~~~sp~q~e~lc~~L~l~~lsd~~l~~---------lc~~ll~ls-----~dlS~~~a~v~~~~l~LPkil~L- 103 (264)
T 2ilr_A 39 VELQLLHECSPSQMDLLCAQLQLPQLSDLGLLR---------LCTWLLALS-----PDLSLSNATVLTRSLFLGRILSL- 103 (264)
T ss_dssp HHHHGGGGCCHHHHHHHHHHHTGGGCCHHHHHH---------HHHHHHHCS-----SCCCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccCCHHHHHH---------HHHHHHcCC-----cchhhhhHHHHHHHHHHHHHHhc-
Confidence 444455558888888888876622 012222 223344321 000222222 2333455677666
Q ss_pred cCCCCchhhhhhccccCccchHHHHHHHH-HhhHhhccCCCchhHHHHhhh-h-CCHHHHHHHHHHHHHHHHHHhhCcch
Q 048735 371 KSPHGNHVIKRCLQKFPPDYTKDLLEEIA-ENCLDLATDRSGCCLLQYCIP-L-AQEEQKARLIADVVANAYVLSEHSYG 447 (579)
Q Consensus 371 ~D~~GnhVlQklLe~~~~~~~~~Ii~~l~-~~l~~La~~k~Gs~VVQklLe-~-~~~~~~~~Lv~~L~~~l~~La~D~~G 447 (579)
..-++.++..++..+-...-..+++.+. .-+..-...+.-+-++.++++ . ..++.+..++..+. .+.=+..-
T Consensus 104 -~~~ASR~L~sal~~f~k~~p~a~~~all~PLL~~~~~g~~Q~eLi~rlik~e~l~p~~~~lll~~iL----~l~WtE~~ 178 (264)
T 2ilr_A 104 -TSSASRLLTTALTSFAAKYTYPVCSALLDPVLQAPGTGPAQTELLCCLVKMESLEPDAQVLMLGQIL----ELPWKEET 178 (264)
T ss_dssp -SSCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH----HSCCCHHH
T ss_pred -cCcchhHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHHH----hccchHHH
Confidence 4455555444433332444445555543 333333344445667777775 3 36666666666654 23444444
Q ss_pred hHHHHHHHhcCCh---hhHHHHHHHHHHhHHhhcCC-cchH
Q 048735 448 NYVVQYILGLKIP---QVTADVVAQLAGRYFALSLG-KCSS 484 (579)
Q Consensus 448 nyVIQ~iLe~~~~---~~r~~Ii~~L~g~~~~Ls~~-k~GS 484 (579)
--|+|.+|+.... +....++..+.+.-..++++ |||.
T Consensus 179 ~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~~skSlkFak 219 (264)
T 2ilr_A 179 FLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATTSMAYAK 219 (264)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHHC-----CCSHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHHhhcccHHHH
Confidence 5678888875432 33444455554444455555 4443
No 21
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=40.08 E-value=1.7e+02 Score=28.96 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=12.2
Q ss_pred CchhhhhhccccCccchHHHHHHHH
Q 048735 375 GNHVIKRCLQKFPPDYTKDLLEEIA 399 (579)
Q Consensus 375 GnhVlQklLe~~~~~~~~~Ii~~l~ 399 (579)
|.-.+-.+|..++....+.|++.+.
T Consensus 143 G~~~vA~ILN~~d~~~e~~iL~~L~ 167 (279)
T 3pkr_A 143 GLRAVAEIFNRLGQKSAKTTLARIE 167 (279)
T ss_dssp SHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3344555555555444444554443
No 22
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=32.35 E-value=1.3e+02 Score=27.17 Aligned_cols=26 Identities=8% Similarity=0.049 Sum_probs=11.9
Q ss_pred CcchhHHHHHHHhhccHHHHHHHHHH
Q 048735 289 HQSANHLIQKLIGVLNEEQMTKLILS 314 (579)
Q Consensus 289 D~~Gs~VIQkLle~~s~eq~~~I~~~ 314 (579)
|..|.-.+...+..+..+..+.|++.
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~ 31 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNL 31 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHH
Confidence 44444444444555554444444443
No 23
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=32.31 E-value=1.2e+02 Score=29.36 Aligned_cols=54 Identities=7% Similarity=-0.006 Sum_probs=24.4
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHHHHH
Q 048735 263 KVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVV 316 (579)
Q Consensus 263 lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~l~ 316 (579)
+|+.-+.+++..+|..+-+....=.......-....+++..+.+....+++.+.
T Consensus 39 ~l~~L~~~~~~~v~~~l~~~~~~~vl~~l~~~~~~~ll~~l~~d~~~~ll~~l~ 92 (278)
T 2yvy_A 39 LWDELKGEHRYVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELS 92 (278)
T ss_dssp GGGGSCHHHHHHHHHHSCHHHHHHHHHTSCHHHHHHHHHHSCHHHHHHHHHHSC
T ss_pred HHHhCCHHHHHHHHHhCChhHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 455555555666665554432222222223333444555555544444444443
No 24
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=32.08 E-value=4.8e+02 Score=27.54 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=30.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhChhhHHHhhcCcChHHHHHHHHhcCCc
Q 048735 486 VVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQTAWDVSQG 534 (579)
Q Consensus 486 VVEk~L~~a~~~~r~~Ii~eL~~~~~l~~L~~d~~GnyVVQklL~~~~~ 534 (579)
-++.+++..++.+...++..|+. .+...+.+++- -|..++|...+.
T Consensus 307 eleeile~~~~~ef~~i~~~lF~--~la~ci~S~hf-qVAErAL~~w~N 352 (449)
T 2npp_B 307 ELEEILDVIEPSEFVKIMEPLFR--QLAKCVSSPHF-QVAERALYYWNN 352 (449)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHH--HHHHHHTCSCH-HHHHHHHGGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH--HHHHHHcCCCH-HHHHHHHHHHCC
Confidence 35677777777777777777777 66666666554 466666666655
No 25
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=31.87 E-value=79 Score=28.75 Aligned_cols=86 Identities=10% Similarity=0.003 Sum_probs=52.3
Q ss_pred hcCCCccHHHHhhhccCCHHHHHHHHHHHHHHHH-HHhcCcchhHHHHHHHhhccHHHHHHHHHHHHhhchhhhhhhccc
Q 048735 251 AKDEQGCRFLQKKVDERNPIDIEMILSEVIDDLH-ELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDL 329 (579)
Q Consensus 251 a~Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~-~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~l~~~~g~~~~La~d~ 329 (579)
.+|..|.-.|......++.+.++.+++.+...-. --..|..|.-.+...+.....+..+.|++. + ..--..+.
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----g-~~~~~~~~ 77 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA-----G-ASPMALDR 77 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----T-CCTTCCCT
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc-----C-CCccccCC
Confidence 4577788888888888888877777775543211 124566777777777777777655555542 1 11123466
Q ss_pred cCCHHHHHHHHhc
Q 048735 330 SGSRVMQKLLDAG 342 (579)
Q Consensus 330 ~GsrVLQklLe~~ 342 (579)
.|...+..+....
T Consensus 78 ~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 78 HGQTAAHLACEHR 90 (241)
T ss_dssp TSCCHHHHHHHTT
T ss_pred CCCCHHHHHHHcC
Confidence 6776776666655
No 26
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=30.66 E-value=1.7e+02 Score=27.79 Aligned_cols=52 Identities=8% Similarity=0.188 Sum_probs=28.5
Q ss_pred cCccchHHHHHHHHHhhHhhccCC----CchhHHHHhhhhCCHHHHHHHHHHHHHH
Q 048735 386 FPPDYTKDLLEEIAENCLDLATDR----SGCCLLQYCIPLAQEEQKARLIADVVAN 437 (579)
Q Consensus 386 ~~~~~~~~Ii~~l~~~l~~La~~k----~Gs~VVQklLe~~~~~~~~~Lv~~L~~~ 437 (579)
.+++....|-+.+...+....... -|...+-.++...+......+++.|...
T Consensus 57 v~p~~~~~l~~~L~~~l~~~~~~~~~~~gG~~~~A~IlN~~~~~~e~~il~~L~~~ 112 (216)
T 4fhr_B 57 TSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQE 112 (216)
T ss_dssp CCHHHHHHHHHHHHHHSTTCC-------CSHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccccccccCCcHHHHHHHHHcCChhHHHHHHHHHHhc
Confidence 445555555444544443332221 2556666777777777777777766643
No 27
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=28.45 E-value=2.9e+02 Score=31.35 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHH
Q 048735 351 TQEQQSLLVSAL 362 (579)
Q Consensus 351 ~~eq~~~l~~eL 362 (579)
+.+....++.+|
T Consensus 126 ~~~~~~~ll~~~ 137 (778)
T 3opb_A 126 NKDATIALLNEL 137 (778)
T ss_dssp SGGGGHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 344555555555
No 28
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=26.55 E-value=5.5e+02 Score=26.49 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhcCcc
Q 048735 276 LSEVIDDLHELMRHQS 291 (579)
Q Consensus 276 ~~ei~~~~~~L~~D~~ 291 (579)
..++.|.+..++.|..
T Consensus 201 ~~~l~~~l~~~~~d~~ 216 (588)
T 1b3u_A 201 KSEIIPMFSNLASDEQ 216 (588)
T ss_dssp HHTHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHhcCCc
Confidence 3445555555655554
No 29
>1rf3_B 24-residue peptide from lymphotoxin-B receptor; CD40, NF-KB signaling, LTBR, TNF receptor, TRAF3 crystallography, signaling protein; 3.50A {Homo sapiens} SCOP: j.116.1.1
Probab=26.37 E-value=50 Score=20.28 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCcccCCCCC
Q 048735 118 PYPIPLNQAQYSFINSLPT 136 (579)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~ 136 (579)
|||+|--+.|-+-+-|.|+
T Consensus 1 pyp~peeg~p~p~~ls~p~ 19 (26)
T 1rf3_B 1 PYPIPEEGDPGPPGLSTPH 19 (26)
T ss_dssp CCCCCCCCCSSCCCSSCCC
T ss_pred CCCCCcCCCCCCcccCCcc
Confidence 4555554444444444443
No 30
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.29 E-value=2.8e+02 Score=24.85 Aligned_cols=87 Identities=16% Similarity=0.065 Sum_probs=42.6
Q ss_pred CchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHhcCChhhHHHHHHHHHHhHHh-------hcCCcc
Q 048735 410 SGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGNYVVQYILGLKIPQVTADVVAQLAGRYFA-------LSLGKC 482 (579)
Q Consensus 410 ~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~GnyVIQ~iLe~~~~~~r~~Ii~~L~g~~~~-------Ls~~k~ 482 (579)
.|...+..+......+..+.|++. ....-+.|..|.-.+......+..+....+++.|...=.. ...+..
T Consensus 120 ~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~ 196 (232)
T 2rfa_A 120 YGEHPLSFAACVGSEEIVRLLIEH---GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQ 196 (232)
T ss_dssp CCSSHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCC
Confidence 455555555554443333322221 0111234666666666666665555555555555543222 245666
Q ss_pred hHHHHHHHHhhcCHHHH
Q 048735 483 SSNVVQKCLLESGEEQS 499 (579)
Q Consensus 483 GS~VVEk~L~~a~~~~r 499 (579)
|...+..+...+..+..
T Consensus 197 g~tpl~~A~~~g~~~~v 213 (232)
T 2rfa_A 197 GLTPFKLAGVEGNIVMF 213 (232)
T ss_dssp SCCHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHcCCHHHH
Confidence 66666666655554433
No 31
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=24.29 E-value=1.5e+02 Score=26.52 Aligned_cols=82 Identities=9% Similarity=0.000 Sum_probs=37.5
Q ss_pred CCCccHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhccHHHHHHHHHHHHhhchhhhhhhccccCC
Q 048735 253 DEQGCRFLQKKVDERNPIDIEMILSEVIDDLHELMRHQSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGS 332 (579)
Q Consensus 253 Dq~gSr~LQ~lLe~~~~e~~~~I~~ei~~~~~~L~~D~~Gs~VIQkLle~~s~eq~~~I~~~l~~~~g~~~~La~d~~Gs 332 (579)
|..|.-.|......+..+.++.+++.- ...-..|..|.-.+...+.....+..+.|++. +....-..+..|.
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----~~~~~~~~~~~g~ 93 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEAS---ADANIQDNMGRTPLHAAVSADAQGVFQILIRN-----RATDLDARMHDGT 93 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB-----TTSCTTCCCTTCC
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-----CCCCcccCCCCCC
Confidence 344444444444555544444443320 00113456666666666666665554444442 1111122345565
Q ss_pred HHHHHHHHhc
Q 048735 333 RVMQKLLDAG 342 (579)
Q Consensus 333 rVLQklLe~~ 342 (579)
..+..+....
T Consensus 94 t~L~~A~~~~ 103 (223)
T 2f8y_A 94 TPLILAARLA 103 (223)
T ss_dssp CHHHHHHHHT
T ss_pred cHHHHHHHhC
Confidence 5555555544
No 32
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.89 E-value=3.5e+02 Score=24.07 Aligned_cols=186 Identities=14% Similarity=0.083 Sum_probs=77.9
Q ss_pred cchhHHHHHHHhhccHHHHHHHHHHHHhhchhhhhhhccccCCHHHHHHHHhcCCCCccCCCHHHHHHHHHHHHhhHhHh
Q 048735 290 QSANHLIQKLIGVLNEEQMTKLILSVVSSQQRLLRICDDLSGSRVMQKLLDAGEYPTRQQLTQEQQSLLVSALKNITVSL 369 (579)
Q Consensus 290 ~~Gs~VIQkLle~~s~eq~~~I~~~l~~~~g~~~~La~d~~GsrVLQklLe~~~~~~~~~~~~eq~~~l~~eL~~~i~~L 369 (579)
..++..+...+..++.+..+.+++.-. ...-..+..|...+..+.... ..+..+.+++. ...--
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~A~~~g--------~~~~v~~Ll~~---g~~~~ 67 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADK-----SLATRTDQDSRTALHWACSAG--------HTEIVEFLLQL---GVPVN 67 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCG-----GGGGCCCTTSCCHHHHHHHHT--------CHHHHHHHHHT---TCCSC
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhch-----hhhhcCCCCCCCHHHHHHHcC--------cHHHHHHHHHh---CCCCC
Confidence 344455555566666555555554311 112234555665665555554 33333333321 11111
Q ss_pred ccCCCCchhhhhhccccCccchHHHHHHHHHhhHhh-ccCCCchhHHHHhhhhCCHHHHHHHHHHHHHHHHHHhhCcchh
Q 048735 370 SKSPHGNHVIKRCLQKFPPDYTKDLLEEIAENCLDL-ATDRSGCCLLQYCIPLAQEEQKARLIADVVANAYVLSEHSYGN 448 (579)
Q Consensus 370 ~~D~~GnhVlQklLe~~~~~~~~~Ii~~l~~~l~~L-a~~k~Gs~VVQklLe~~~~~~~~~Lv~~L~~~l~~La~D~~Gn 448 (579)
..|..|...+......... .+++.+.+.-..+ ..+..|...+..++.....+..+.|++. ....-..|..|.
T Consensus 68 ~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~ 140 (231)
T 3aji_A 68 DKDDAGWSPLHIAASAGXD----EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG---GANPDAKDHYDA 140 (231)
T ss_dssp CCCTTSCCHHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSC
T ss_pred CcCCCCCCHHHHHHHcCHH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCC
Confidence 2344454444444333222 2333333222111 2344555555555555443333322221 000112345555
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhHHh-hcCCcchHHHHHHHHhhcCHHHHHHH
Q 048735 449 YVVQYILGLKIPQVTADVVAQLAGRYFA-LSLGKCSSNVVQKCLLESGEEQSTGI 502 (579)
Q Consensus 449 yVIQ~iLe~~~~~~r~~Ii~~L~g~~~~-Ls~~k~GS~VVEk~L~~a~~~~r~~I 502 (579)
..+......+..+ +++.|...-.. -..+..|...+..+......+..+.+
T Consensus 141 t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 191 (231)
T 3aji_A 141 TAMHRAAAKGNLK----MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191 (231)
T ss_dssp CHHHHHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHcCCHH----HHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHH
Confidence 5555555544333 33333322111 12355666666666665554433333
No 33
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=21.10 E-value=6.9e+02 Score=25.69 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=6.5
Q ss_pred HHHHHHHHHhcCc
Q 048735 278 EVIDDLHELMRHQ 290 (579)
Q Consensus 278 ei~~~~~~L~~D~ 290 (579)
.+.+.+..++.|+
T Consensus 242 ~~~~~l~~~~~d~ 254 (588)
T 1b3u_A 242 LVMPTLRQAAEDK 254 (588)
T ss_dssp HTHHHHHHHHTCS
T ss_pred HHHHHHHHHccCC
Confidence 3444555555554
No 34
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=20.94 E-value=7.9e+02 Score=26.29 Aligned_cols=178 Identities=9% Similarity=0.037 Sum_probs=93.1
Q ss_pred hhhccccCccchHHHHHHHHHhhHhhccCCCchhHHHHhhh---hCCHHHHHHHHHHHHHHHHHHhhCcchhH--HHHHH
Q 048735 380 KRCLQKFPPDYTKDLLEEIAENCLDLATDRSGCCLLQYCIP---LAQEEQKARLIADVVANAYVLSEHSYGNY--VVQYI 454 (579)
Q Consensus 380 QklLe~~~~~~~~~Ii~~l~~~l~~La~~k~Gs~VVQklLe---~~~~~~~~~Lv~~L~~~l~~La~D~~Gny--VIQ~i 454 (579)
...++.+..+..+ |-......+..+|.+.+-++|+.-+.. .....++..+-..|... +-.|+-|.. +..+|
T Consensus 68 ~a~lDLcEDed~~-IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sl---lk~Dpk~tl~~lf~~i 143 (507)
T 3u0r_A 68 NAQLDLCEDEDVS-IRRQAIKELPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSI---FKMDAKGTLGGLFSQI 143 (507)
T ss_dssp HHHHHHHTCSSHH-HHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHH-HHHHHHHhhHHHhhhhhhhhHHHHHHHHHhccchHHHHHHHHHHHHH---HhcChHHHHHHHHHHH
Confidence 3344444333322 333445566777777665555444333 22333333333333322 223433322 33344
Q ss_pred HhcCChhhHHHHHHHHHHhHHhhcCCcchHH-------HHHHHHhhcCHHHHHHHHHHHhChhhHHHhhcCcChHHHHHH
Q 048735 455 LGLKIPQVTADVVAQLAGRYFALSLGKCSSN-------VVQKCLLESGEEQSTGIINEIIRHPEIVQLILDPYGNYVIQT 527 (579)
Q Consensus 455 Le~~~~~~r~~Ii~~L~g~~~~Ls~~k~GS~-------VVEk~L~~a~~~~r~~Ii~eL~~~~~l~~L~~d~~GnyVVQk 527 (579)
.. +.+..|+++++.|...+..|-..-.+.- .+.|++.-.+.++...++.-|.. ..+..+.-|.--+-.
T Consensus 144 ~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~----lkl~~t~~g~qeLv~ 218 (507)
T 3u0r_A 144 LQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSG----LKSLQTVSGRQQLVE 218 (507)
T ss_dssp HH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHT----SGGGSSHHHHHHHHH
T ss_pred cc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHh----cccccCchHHHHHHH
Confidence 44 4666799999999998888777766643 24555555566677777755533 222222222222212
Q ss_pred HH----------hcCCcHHHHHHHHHHHHhhHHHHhhCCchHHHHHHHHh
Q 048735 528 AW----------DVSQGRRIRQTLYDLVVDNSPFLQSHMYGKNVLAKVRG 567 (579)
Q Consensus 528 lL----------~~~~~~~~re~Ll~~L~~~l~~L~~~~~G~~Vv~kl~~ 567 (579)
++ ...+. +.-++++..+...++-.+....+.+.+..+.+
T Consensus 219 ii~eQa~L~~~f~~sD~-e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~ 267 (507)
T 3u0r_A 219 LVAEQADLEQTFNPSDP-DCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCE 267 (507)
T ss_dssp HHHHHHTTTSCCCSSCH-HHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHH
T ss_pred HHHHHHhccCCCCCcCH-HHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Confidence 21 12233 56677777777777777777777776666544
Done!