BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048736
(550 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 303 bits (776), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 175/456 (38%), Positives = 256/456 (56%), Gaps = 46/456 (10%)
Query: 78 NYANALGISMQFFDVQKSGKL-VNNKIVWRGDSALHDGSEENLDLSKGLYDAGDLMKFGF 136
+Y L S+ F++ Q+SG+L + K+ WR DSAL+D ++ DL+ G +DAGD +KFGF
Sbjct: 4 DYKQVLRDSLLFYEAQRSGRLPADQKVTWRKDSALNDQGDQGQDLTGGYFDAGDFVKFGF 63
Query: 137 PMAFTATVLSWAILEYGDHMNAVKQLEHAQESLKWITDYLINAHPSQNMLYIQVGDPDLD 196
PMA+TATVL+W ++++ ++ L+ ++++KW TDY I AH SQN Y QVG D D
Sbjct: 64 PMAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHTSQNEFYGQVGQGDAD 123
Query: 197 HSCWERPETMSEKRPLTQINTTFPGXXXXXXXXXXXXXXXLVFRRINSSYANLLLMHARQ 256
H+ W RPE M+ RP +I+T+ PG +VFR ++ +Y+N LL HARQ
Sbjct: 124 HAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHARQ 183
Query: 257 LFTFADTYRGSYSMSVPQVQKYYNSTGYEDELLWAATWLYHATRDRSYLEYVTDINGQ-A 315
LF FA+ YRG YS S+ + +Y S Y DEL+WAA WLY AT D +YL + +
Sbjct: 184 LFDFANNYRGKYSDSITDARNFYASADYRDELVWAAAWLYRATNDNTYLNTAESLYDEFG 243
Query: 316 FANWGIPTWFSWDNKHAGLQVLLSRINIFGSEDVSETENLGLQMYRRTAESIMCGLLPDS 375
NWG +WD+K +G+QVLL+++ Q Y+ T +S + L+ +
Sbjct: 244 LQNWG--GGLNWDSKVSGVQVLLAKLT-------------NKQAYKDTVQSYVNYLINN- 287
Query: 376 PTATSSRTDSGLIWIVKWNSLQHPVASAFLAVLYSDYMIASGTETLYCSGKSYQPHDLRK 435
+T GL++I W +L+H +AF+ + ++ L S SY R+
Sbjct: 288 ----QQKTPKGLLYIDMWGTLRHAANAAFIMLEAAE---------LGLSASSY-----RQ 329
Query: 436 FAISQVDYLLGKNPMEMSYLVGYGNNYPLYVHHRGSSIPADANTGCTDGFKWLESESPNP 495
FA +Q+DY LG S++ G+G+N P HHR SS P A C W SP+P
Sbjct: 330 FAQTQIDYALGDG--GRSFVCGFGSNPPTRPHHRSSSCPP-APATC----DWNTFNSPDP 382
Query: 496 N--VAIGALVGGPFLNESYIDSRNNSMQGE-PTTYN 528
N V GALVGGP N++Y+D R++ + E T YN
Sbjct: 383 NYHVLSGALVGGPDQNDNYVDDRSDYVHNEVATDYN 418
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 281 bits (718), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 180/470 (38%), Positives = 253/470 (53%), Gaps = 55/470 (11%)
Query: 74 EIVENYANALGISMQFFDVQKSGKLV-NNKIVWRGDSALHDGSEENLDLSKGLYDAGDLM 132
E NYA AL SM F++ Q+SGKL NN++ WRGDS L+DG++ LDL+ G YDAGD +
Sbjct: 1 EPAFNYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHV 60
Query: 133 KFGFPMAFTATVLSWAILEYGDHMNAVKQLEHAQESLKWITDYLINAHPSQNMLYIQVGD 192
KFGFPMAFTAT+L+W +E + Q+ + +++L+W+ DY I AHPS N+LY+QVGD
Sbjct: 61 KFGFPMAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSPNVLYVQVGD 120
Query: 193 PDLDHSCWERPETMSEKRPLTQINTTFPGXXXXXXXXXXXXXXXLVFRRINSSYANLLLM 252
D DH W E M +RP +++ + PG +VF + +YA L+
Sbjct: 121 GDADHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQ 180
Query: 253 HARQLFTFADTYRGSYSMSVPQVQKYYNSTGYEDELLWAATWLYHATRDRSYL------- 305
HA+QL+TFADTYRG YS VP Y + +GY+DEL+W A WLY AT D SYL
Sbjct: 181 HAKQLYTFADTYRGVYSDCVPAGAFYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYEY 240
Query: 306 -----EYVTDINGQAFANWGIPTWFSWDNKHAGLQVLLSRINIFGSEDVSETENLGLQMY 360
E TD+ W I +WD+K G VLL++ G + + N L +
Sbjct: 241 DFLSTEQQTDLRSY---RWTI----AWDDKSYGTYVLLAKET--GKQKYIDDANRWLDYW 291
Query: 361 RRTAESIMCGLLPDSPTATSSRTDSGLIWIVKWNSLQHPVASAFLAVLYSDYMIASGTET 420
+ +P SP G+ + W +L++ +AF+A++Y+ + +
Sbjct: 292 ---TVGVNGQRVPYSP--------GGMAVLDTWGALRYAANTAFVALVYAKVIDDPVRKQ 340
Query: 421 LYCSGKSYQPHDLRKFAISQVDYLLGKNPMEMSYLVGYGNNYPLYVHHRGSSIPADANTG 480
Y HD FA+ Q++Y LG NP SY+VG+GNN P HHR A+
Sbjct: 341 RY--------HD---FAVRQINYALGDNPRNSSYVVGFGNNPPRNPHHR------TAHGS 383
Query: 481 CTDGFKWLESESPNPNVAIGALVGGP-FLNESYIDSRNNSMQGE-PTTYN 528
TD + S + N +V GALVGGP N++Y D R + + E T YN
Sbjct: 384 WTDS---IASPAENRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYN 430
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 238 bits (606), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 225/456 (49%), Gaps = 49/456 (10%)
Query: 78 NYANALGISMQFFDVQKSGKLVN-NKIVWRGDSALHDGSEENLDLSKGLYDAGDLMKFGF 136
NY AL ++ F++ Q SGKL N + WRGDSAL DG + LDL+ G +DAGD +KF
Sbjct: 27 NYGEALQKAIMFYEFQMSGKLPNWVRNNWRGDSALKDGQDNGLDLTGGWFDAGDHVKFNL 86
Query: 137 PMAFTATVLSWAILEYGDHMNAVKQLEHAQESLKWITDYLINAHPSQNMLYIQVGDPDLD 196
PM++T T+LSWA+ EY D QLEH ++W+ DY + HPS+ + Y QVGD D
Sbjct: 87 PMSYTGTMLSWAVYEYKDAFVKSGQLEHILNQIEWVNDYFVKCHPSKYVYYYQVGDGSKD 146
Query: 197 HSCWERPETMSEKRPLTQINTTFPGXXXXXXXXXXXXXXXLVFRRINSSYANLLLMHARQ 256
H+ W E M +RP ++ + PG +V + N + A L HA++
Sbjct: 147 HAWWGPAEVMQMERPSFKVTQSSPGSTVVAETAASLAAASIVLKDRNPTKAATYLQHAKE 206
Query: 257 LFTFADTYRGSYSMSVPQVQKYYNS-TGYEDELLWAATWLYHATRDRSYL----EYVTDI 311
L+ FA+ + + YYNS +G+ DEL WAA WLY AT D +YL YV +
Sbjct: 207 LYEFAEVTKSDAGYTA--ANGYYNSWSGFYDELSWAAVWLYLATNDSTYLTKAESYVQNW 264
Query: 312 NGQAFANWGIPTW-FSWDNKHAGLQVLLSRINIFGSEDVSETENLGLQMYRRTAESIMCG 370
+ +N W WD+ H G +LL++I G +Y++ ES +
Sbjct: 265 PKISGSNTIDYKWAHCWDDVHNGAALLLAKIT-------------GKDIYKQIIESHLDY 311
Query: 371 LLPDSPTATSSRTDSGLIWIVKWNSLQHPVASAFLAVLYSDYMIASGTETLYCSGKSYQP 430
T GL W+ +W SL++ +AFLA +YSD++ T +
Sbjct: 312 WTTGYNGERIKYTPKGLAWLDQWGSLRYATTTAFLAFVYSDWVGCPST----------KK 361
Query: 431 HDLRKFAISQVDYLLGKNPMEMSYLVGYGNNYPLYVHHRGSSIPADANTGCTDGFKWLES 490
RKF SQ+DY LG S++VG+G N P HHR T W +S
Sbjct: 362 EIYRKFGESQIDYALGS--AGRSFVVGFGTNPPKRPHHR------------TAHSSWADS 407
Query: 491 ESP---NPNVAIGALVGGPFLNESYIDSRNNSMQGE 523
+S + + GALVGGP ++SY D +N + E
Sbjct: 408 QSIPSYHRHTLYGALVGGPGSDDSYTDDISNYVNNE 443
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 234 bits (598), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 153/457 (33%), Positives = 225/457 (49%), Gaps = 59/457 (12%)
Query: 78 NYANALGISMQFFDVQKSGKLVNN--KIVWRGDSALHDGSEENLDLSKGLYDAGDLMKFG 135
NY AL ++ F++ Q+SGKL ++ ++ WRGDS L DG + +DL+ G YDAGD +KF
Sbjct: 25 NYGEALQKAIFFYECQRSGKLDSSTLRLNWRGDSGLDDGKDAGIDLTGGWYDAGDHVKFN 84
Query: 136 FPMAFTATVLSWAILEYGDHMNAVKQLEHAQESLKWITDYLINAHPSQNMLYIQVGDPDL 195
PM+++A +L WA+ EY D Q H ++KW DY I HP +++ Y QVGD
Sbjct: 85 LPMSYSAAMLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFIKCHPEKDVYYYQVGDGHA 144
Query: 196 DHSCWERPETMSEKRPLTQINTTFPGXXXXXXXXXXXXXXXLVFRRINSSYANLLLMHAR 255
DH+ W E M +RP +++ + PG ++F++++ Y+ L HA+
Sbjct: 145 DHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFKKVDGEYSKECLKHAK 204
Query: 256 QLFTFADTYRGSYSMSVPQVQKYYNS-TGYEDELLWAATWLYHATRDRSYLEYVTDINGQ 314
+LF FADT + + +YNS +G+ DEL WAA WLY AT D SYL+ + +
Sbjct: 205 ELFEFADTTKSDDGYTA--ANGFYNSWSGFYDELSWAAVWLYLATNDSSYLDKAESYSDK 262
Query: 315 AFANWG------IPTWF---SWDNKHAGLQVLLSRI-NIFGSEDVSETENLGLQMYRRTA 364
WG IP + WD+ G +LL+RI N G + +L
Sbjct: 263 ----WGYEPQTNIPKYKWAQCWDDVTYGTYLLLARIKNDNGKYKEAIERHLDWWTTGYNG 318
Query: 365 ESIMCGLLPDSPTATSSRTDSGLIWIVKWNSLQHPVASAFLAVLYSDYMIASGTETLYCS 424
E I + T GL W+ +W SL++ +AFLA +YSD+ +
Sbjct: 319 ERI-------------TYTPKGLAWLDQWGSLRYATTTAFLACVYSDWE----------N 355
Query: 425 GKSYQPHDLRKFAISQVDYLLGKNPMEMSYLVGYGNNYPLYVHHRGSSIPADANTGCTDG 484
G + +FA SQ DY LG S++VG+G N P HHR T
Sbjct: 356 GDKEKAKTYLEFARSQADYALGSTG--RSFVVGFGENPPKRPHHR------------TAH 401
Query: 485 FKWLESESPNP---NVAIGALVGGPFLNESYIDSRNN 518
W +S+ P +V GALVGGP ++Y D +N
Sbjct: 402 GSWADSQMEPPEHRHVLYGALVGGPDSTDNYTDDISN 438
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 140/453 (30%), Positives = 220/453 (48%), Gaps = 44/453 (9%)
Query: 78 NYANALGISMQFFDVQKSGKL-VNNKIVWRGDSALHDGSEENLDLSKGLYDAGDLMKFGF 136
NY AL S+ F++ Q+SG L + + WR DS + DGS+ +DL+ G YDAGD +KF
Sbjct: 5 NYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFNL 64
Query: 137 PMAFTATVLSWAILEYGDHMNAVKQLEHAQESLKWITDYLINAHPSQNMLYIQVGDPDLD 196
PM++T+ +L+W++ E D + Q ++ + +KW DY I +P+ + Y QVGD D
Sbjct: 65 PMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDGGKD 124
Query: 197 HSCWERPETMSEKRPLTQINTTFPGXXXXXXXXXXXXXXXLVFRRINSSYANLLLMHARQ 256
HS W E M +RP +++ + PG +VF+ + +YA + HA+
Sbjct: 125 HSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAKN 184
Query: 257 LFTFADTYRGSYSMSVPQVQKYYNSTGYEDELLWAATWLYHATRDRSYLE----YVTDIN 312
LF AD + + +S D+L WAA WLY AT D +YL+ YV +
Sbjct: 185 LFDMADKAKSDAGYTAASGYYSSSSF--YDDLSWAAVWLYLATNDSTYLDKAESYVPNWG 242
Query: 313 GQAFANWGIPTWFS-WDNKHAGLQVLLSRINIFGSEDVSETENLGLQMYRRTAESIMCGL 371
+ + W WD+ H G ++LL+++ Q+Y+ + E +
Sbjct: 243 KEQQTDIIAYKWGQCWDDVHYGAELLLAKLT-------------NKQLYKDSIEMNLDFW 289
Query: 372 LPDSPTATSSRTDSGLIWIVKWNSLQHPVASAFLAVLYSDYMIASGTE-TLYCSGKSYQP 430
S T GL W+ +W SL+H AFLA +Y+++ + ++ ++Y
Sbjct: 290 TTGVNGTRVSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEGCTPSKVSVY-------- 341
Query: 431 HDLRKFAISQVDYLLGKNPMEMSYLVGYGNNYPLYVHHRGSSIPADANTGCTDGFKWLES 490
+ F SQ+DY LG S++VGYG N P + HHR A+ TD + S
Sbjct: 342 ---KDFLKSQIDYALGS--TGRSFVVGYGVNPPQHPHHR------TAHGSWTDQ---MTS 387
Query: 491 ESPNPNVAIGALVGGPFLNESYIDSRNNSMQGE 523
+ + + GALVGGP + Y D NN + E
Sbjct: 388 PTYHRHTIYGALVGGPDNADGYTDEINNYVNNE 420
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 140/453 (30%), Positives = 220/453 (48%), Gaps = 44/453 (9%)
Query: 78 NYANALGISMQFFDVQKSGKL-VNNKIVWRGDSALHDGSEENLDLSKGLYDAGDLMKFGF 136
NY AL S+ F++ Q+SG L + + WR DS + DGS+ +DL+ G YDAGD +KF
Sbjct: 5 NYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFNL 64
Query: 137 PMAFTATVLSWAILEYGDHMNAVKQLEHAQESLKWITDYLINAHPSQNMLYIQVGDPDLD 196
PM++T+ +L+W++ E D + Q ++ + +KW DY I +P+ + Y QVGD D
Sbjct: 65 PMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDGGKD 124
Query: 197 HSCWERPETMSEKRPLTQINTTFPGXXXXXXXXXXXXXXXLVFRRINSSYANLLLMHARQ 256
HS W E M +RP +++ + PG +VF+ + +YA + HA+
Sbjct: 125 HSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAKN 184
Query: 257 LFTFADTYRGSYSMSVPQVQKYYNSTGYEDELLWAATWLYHATRDRSYLE----YVTDIN 312
LF AD + + +S D+L WAA WLY AT D +YL+ YV +
Sbjct: 185 LFDMADKAKSDAGYTAASGYYSSSSF--YDDLSWAAVWLYLATNDSTYLDKAESYVPNWG 242
Query: 313 GQAFANWGIPTWFS-WDNKHAGLQVLLSRINIFGSEDVSETENLGLQMYRRTAESIMCGL 371
+ + W WD+ H G ++LL+++ Q+Y+ + E +
Sbjct: 243 KEQQTDIIAYKWGQXWDDVHYGAELLLAKLT-------------NKQLYKDSIEMNLDFW 289
Query: 372 LPDSPTATSSRTDSGLIWIVKWNSLQHPVASAFLAVLYSDYMIASGTE-TLYCSGKSYQP 430
S T GL W+ +W SL+H AFLA +Y+++ + ++ ++Y
Sbjct: 290 TTGVNGTRVSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEGCTPSKVSVY-------- 341
Query: 431 HDLRKFAISQVDYLLGKNPMEMSYLVGYGNNYPLYVHHRGSSIPADANTGCTDGFKWLES 490
+ F SQ+DY LG S++VGYG N P + HHR A+ TD + S
Sbjct: 342 ---KDFLKSQIDYALGS--TGRSFVVGYGVNPPQHPHHR------TAHGSWTDQ---MTS 387
Query: 491 ESPNPNVAIGALVGGPFLNESYIDSRNNSMQGE 523
+ + + GALVGGP + Y D NN + E
Sbjct: 388 PTYHRHTIYGALVGGPDNADGYTDEINNYVNNE 420
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 205 bits (522), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 132/449 (29%), Positives = 208/449 (46%), Gaps = 54/449 (12%)
Query: 76 VENYANALGISMQFFDVQKSGKLV--NNKIVWRGDSALHDGSEENLDLSKGLYDAGDLMK 133
+Y+ AL S+ FFD K G NN WRG DGS+ +DL+ G +DAGD +K
Sbjct: 3 THDYSTALKDSIIFFDANKCGPQAGENNVFDWRGACHTTDGSDVGVDLTGGYHDAGDHVK 62
Query: 134 FGFPMAFTATVLSWAILEYGDHMNAVKQLEHAQESLKWITDYLINAHPSQNMLYIQVGDP 193
FG P ++A +L W++ E+ + +A + LK+ TDY + +HP+ Y QVG+
Sbjct: 63 FGLPQGYSAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLKSHPNSTTFYYQVGEG 122
Query: 194 DLDHSCWERPETMSEKRP-LTQINTTFPGXXXXXXXXXXXXXXXLVFRRINSSYANLLLM 252
+ DH+ W PE + +RP L + + + P L ++ I+S+YA L
Sbjct: 123 NADHTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCLN 182
Query: 253 HARQLFTFADTYRGSYSMSVPQVQKYYNSTGYEDELLWAATWLYHATRDRSYL---EYVT 309
A++L+ +G V Q +Y +T + D+L WAATWLY AT D +Y+ E
Sbjct: 183 AAKELYAMGKANQG-----VGNGQSFYQATSFGDDLAWAATWLYTATNDSTYITDAEQFI 237
Query: 310 DINGQAFANWGIPTW-FSWDNKHAGLQVLLSRINIFGSEDVSETENLGLQMYRRTAESIM 368
+ N W WD+ + + L++I G Q+Y+ E
Sbjct: 238 TLGNTMNENKMQDKWTMCWDDMYVPAALRLAQIT-------------GKQIYKDAIEFNF 284
Query: 369 CGLLPDSPTATSSRTDSGLIWIVKWNSLQHPVASAFLAVLYSDYMIASGTETLYCSGKSY 428
+ + T GL W+ W L++ A + + ++Y K
Sbjct: 285 -----NYWKTQVTTTPGGLKWLSNWGVLRYAAAESMVMLVYC---------------KQN 324
Query: 429 QPHDLRKFAISQVDYLLGKNPMEMSYLVGYGNNYPLYVHHRGSSIPADANTGCTDGFKWL 488
L A QVDY+LG NP MSY++GYG+N+ ++ HHR ++ AN
Sbjct: 325 PDQSLLDLAKKQVDYILGDNPANMSYIIGYGSNWCIHPHHRAANGYTYANG--------- 375
Query: 489 ESESPNPNVAIGALVGGPFLNESYIDSRN 517
++ P ++ GALVGGP N+ ++D N
Sbjct: 376 DNAKPAKHLLTGALVGGPDQNDKFLDDAN 404
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 140/490 (28%), Positives = 215/490 (43%), Gaps = 76/490 (15%)
Query: 78 NYANALGISMQFFDVQKSGKLV--NNKIVWRGDSALHDG--------------------- 114
NYA AL SM F+D G V N+ + WRGD ++D
Sbjct: 39 NYAKALQYSMFFYDANMCGTGVDENSLLSWRGDCHVYDARLPLDSQNTNMSDGFISSNRS 98
Query: 115 -----SEENLDLSKGLYDAGDLMKFGFPMAFTATVLSWAILEYGDHMNAVKQLEHAQESL 169
+ +D+S G +DAGD +KFG P A+ A+ + W E+ D A Q HA+ L
Sbjct: 99 VLDPDGDGKVDVSGGFHDAGDHVKFGLPEAYAASTVGWGYYEFKDQFRATGQAVHAEVIL 158
Query: 170 KWITDYLINA---HPSQNMLYI--QVGDPDLDHSCWERPETMSEKRPLTQINTTFPGXXX 224
++ DY + S N++ QVGD D+DH+ W PE + R I PG
Sbjct: 159 RYFNDYFMRCTFRDASGNVVAFCHQVGDGDIDHAFWGAPENDTMFRRGWFITKEKPGTDI 218
Query: 225 XXXXXXXXXXXXLVFRRINSSYANLLLMHARQLFTFADTYRGSYSMSVPQVQKYYNSTGY 284
+ F+ + YA L +A+ LF FA+ + YY S+ +
Sbjct: 219 ISATAASLAINYMNFKDTDPQYAAKSLDYAKALFDFAEKNPKGVVQGEDGPKGYYGSSKW 278
Query: 285 EDELLWAATWLYHATRDRSYLEYVTDINGQAFANWGIPTWF-SWDNKHAGLQVLLSRINI 343
+D+ WAA WLY AT++ YL D + + + P W W++ +G +L+ IN
Sbjct: 279 QDDYCWAAAWLYLATQNEHYL----DEAFKYYDYYAPPGWIHCWNDVWSGTACILAEIND 334
Query: 344 FGSEDVSETENLGLQMYRRTA-----ESI-----MCGLLPDSPTATSSRTDSGLIWIVKW 393
+D E+ Y+R + E I + LL + T G +++ +W
Sbjct: 335 LYDKDSQNFED----RYKRASNKNQWEQIDFWKPIQDLLDKWSGGGITVTPGGYVFLNQW 390
Query: 394 NSLQHPVASAFLAVLYSDYMIASGTETLYCSGKSYQPHDLRKFAISQVDYLLGKNPMEMS 453
S ++ A+ +A++Y + + P +A SQ+DYLLGKNP+
Sbjct: 391 GSARYNTAAQLIALVYDKHHGDT-------------PSKYANWARSQMDYLLGKNPLNRC 437
Query: 454 YLVGYGNNYPLYVHHRGSSIPADANTGCTDGFKWLESESPNPNVAIGALVGGPFLNESYI 513
Y+VGY +N Y HHR +S DAN SP+ V GALVGGP ++ ++
Sbjct: 438 YVVGYSSNSVKYPHHRAASGLKDAN-----------DSSPHKYVLYGALVGGPDASDQHV 486
Query: 514 DSRNNSMQGE 523
D N+ + E
Sbjct: 487 DRTNDYIYNE 496
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 104/482 (21%), Positives = 170/482 (35%), Gaps = 83/482 (17%)
Query: 79 YANALGISMQFFDVQKSGKLV--NNKIVWRGDSALHD------GSEENLDLSKGLYDAGD 130
Y + L ++FFD Q G ++ + W A H G+E L G +DAGD
Sbjct: 88 YRDVLEAMLRFFDYQLCGVVLPEDEAGPW-AHGACHTSDAKVFGTERALACPGGWHDAGD 146
Query: 131 LMKFGFPMAFTATVLSWA------ILEYGDHMNAVKQ-------LEHAQESLKWITDYLI 177
K+ P A L A L + M +V + LE A+E + W+ L
Sbjct: 147 YGKYTVPAAKAVADLLLAHEYFPAALAHVRPMRSVHRAPHLPPALEVAREEIAWL---LT 203
Query: 178 NAHPSQNMLYIQVGDPDLDHSCWERPETMSEKRPLTQINTTFPGXXXXXXXXXXXXXXXL 237
P+ +Y +V P RPE + PL ++ L
Sbjct: 204 MQDPATGGVYHKVTTPSFP-PLDTRPE--DDDAPLVLSPISY---AATATFCAAMAHAAL 257
Query: 238 VFRRINSSYANLLLMHARQLFTFADTYRGSYS-MSVPQVQKYYNSTG----------YED 286
V+R + + ++ AD R +Y+ + ++Q ++N G D
Sbjct: 258 VYRPFDPALSSCC----------ADAARRAYAWLGAHEMQPFHNPDGILTGEYGDAELRD 307
Query: 287 ELLWAATWLYHATRDRSYLEYVTDINGQAFANWGIPTWFSW-DNKHAGLQVLLSRINIFG 345
ELLWA+ L T D ++ + + +P W D G+ L
Sbjct: 308 ELLWASCALLRMTGDSAWARVC-----EPLLDLDLPWELGWADVALYGVMDYLRTPRAAV 362
Query: 346 SEDVSETENLGLQMYRRTAESIMCGLLPDSPTATSSRTDSGLIWIVKWNSLQHPVASAFL 405
S+DV + ++ R + + P R D IW L +A
Sbjct: 363 SDDVRN--KVKSRLLREL--DALAAMAESHPFGIPMRDDD-FIWGSNMVLLNRAMA---- 413
Query: 406 AVLYSDYMIASGTETLYCSGKSYQPHDLRKFAISQVDYLLGKNPMEMSYLVGYGNNYPLY 465
+++A G L+ + + A DYL G NP+ Y+ G+G +
Sbjct: 414 ------FLLAEGVGVLHPAAHT--------VAQRAADYLFGANPLGQCYVTGFGQRPVRH 459
Query: 466 VHHRGSSIPADANTGCTDGFKWLESESPNPNVAIGALVGGPFLNESYIDSRNNSMQGEPT 525
HHR S+ D + + +A L G P + E+YID +++ E
Sbjct: 460 PHHR-PSVADDVDHPVPGMVVGGPNRHLQDEIARAQLAGRPAM-EAYIDHQDSYSTNEVA 517
Query: 526 TY 527
Y
Sbjct: 518 VY 519
>pdb|3H7L|A Chain A, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
pdb|3H7L|B Chain B, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
pdb|3H7L|C Chain C, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
Length = 586
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 429 QPH--------DLRKFAISQVDYLLGKNPMEMSYLVGYGNNYPLYVHHRG-SSIPADANT 479
QPH L FA +++++G NP +M L G+G N P Y+ G +
Sbjct: 458 QPHIASQEIQQQLSVFAQDALNWIVGLNPYDMCMLDGHGRNNPDYLPQYGFFNAKGGVCN 517
Query: 480 GCTDGFKWLESESPNP 495
G T GF+ E + NP
Sbjct: 518 GITGGFEDEEDIAFNP 533
>pdb|1CLC|A Chain A, Three-Dimensional Structure Of Endoglucanase D At 1.9
Angstroms Resolution
Length = 639
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 84/245 (34%), Gaps = 47/245 (19%)
Query: 238 VFRRINSSYANLLLMHARQLFTF-----ADTYRGSYSMSVPQVQKYYNSTGYEDELLWAA 292
+FR + YA + A+ + F A+ + S + Y + D+ LWAA
Sbjct: 302 IFRPYDPQYAEKCINAAKVSYEFLKNNPANVFANQSGFSTGE----YATVSDADDRLWAA 357
Query: 293 TWLYHATRDRSYLEYVTDINGQAFANWGIPTWFSWDNKHAGLQVLLSRINIFGSEDVSET 352
++ D YL + Q F+ I F WDN
Sbjct: 358 AEMWETLGDEEYLRDFENRAAQ-FSK-KIEADFDWDN----------------------V 393
Query: 353 ENLGLQMY----RRTAESIMCGLLPDSPTATSSRTDSGLIWIVKWNSLQHPVASAFLAVL 408
NLG+ Y R + + DS +T+ IV+ S H
Sbjct: 394 ANLGMFTYLLSERPGKNPALVQSIKDSLLSTADS-------IVR-TSQNHGYGRTLGTTY 445
Query: 409 Y--SDYMIASGTETLYCSGKSYQPHDLRKFAISQVDYLLGKNPMEMSYLVGYGNNYPLYV 466
Y + + T L + K +D A+ + ++ G+N SY+ G G N P+
Sbjct: 446 YWGCNGTVVRQTMILQVANKISPNNDYVNAALDAISHVFGRNYYNRSYVTGLGINPPMNP 505
Query: 467 HHRGS 471
H R S
Sbjct: 506 HDRRS 510
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 441 VDYLLGKNPMEMSYLVGYGNNYPLYVHH 468
+ YLLG+N M+ SY+ GYG PL H
Sbjct: 504 ISYLLGRNAMDQSYVTGYGER-PLQNPH 530
>pdb|1RQ5|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 610
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 441 VDYLLGKNPMEMSYLVGYGNNYPLYVHH 468
+ YLLG+N M+ SY+ GYG PL H
Sbjct: 504 ISYLLGRNAMDQSYVTGYGER-PLQNPH 530
>pdb|3ZEY|H Chain H, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 144
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 270 MSVPQVQKYYNSTGYEDELLWAATWLYHATRDRSYLEYVTDINGQ 314
MS Q KYY S+ +D+L++ +Y + D +VTD++G+
Sbjct: 1 MSKKQEVKYYGSSAGKDQLVYGVVHIYASFNDT--FVHVTDMSGR 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,929,334
Number of Sequences: 62578
Number of extensions: 709175
Number of successful extensions: 1488
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1423
Number of HSP's gapped (non-prelim): 22
length of query: 550
length of database: 14,973,337
effective HSP length: 104
effective length of query: 446
effective length of database: 8,465,225
effective search space: 3775490350
effective search space used: 3775490350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)