BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048737
(274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 127/272 (46%), Gaps = 6/272 (2%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
GW + N++EA + + +M+++ P+ ++A+ L L+R ++ +A+K VMK +
Sbjct: 307 GWCRVRNLIEAARIWNDMIDQ-GLKPD-IVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGP 364
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P ++ ++ + K + ++ +D MV G L P+ +Y ++ +D V
Sbjct: 365 CPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSG--LQPDAAVYTCLITGFGTQKKLDTV 422
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+ +M G PD TYN + + + K +++MI+NE +P+ +
Sbjct: 423 YELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKS 482
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240
A E +W +++ GI P + S VL+ GL G+ + R+ EEML++ +
Sbjct: 483 YFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTP 542
Query: 241 DVTMQKLKKAFYNESRSMRDRFDSLERRWKTS 272
+ K F+ + + F+ L +R K S
Sbjct: 543 LIDYNKFAADFHRGGQP--EIFEELAQRAKFS 572
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 118/256 (46%), Gaps = 5/256 (1%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
GW KE N+ +A + F EM++ +P+ ++ Y + L + +VDEAL +R M C
Sbjct: 246 GWGKEPNLPKAREVFREMIDA-GCHPD-IVTYSIMVDILCKAGRVDEALGIVRSMDPSIC 303
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
PT +S + N V + M G + ++ ++N+++G C N + NV
Sbjct: 304 KPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSG--MKADVAVFNSLIGAFCKANRMKNV 361
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+R +M G P+S + N+I LI+ + E + F +MIK +P I M
Sbjct: 362 YRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIK-VCEPDADTYTMVIKM 420
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240
+ E E A ++W Y+ + G+ P + +VL+ GL EEM+ I
Sbjct: 421 FCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPS 480
Query: 241 DVTMQKLKKAFYNESR 256
VT +L++ E R
Sbjct: 481 GVTFGRLRQLLIKEER 496
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 92/214 (42%), Gaps = 6/214 (2%)
Query: 27 EHVLAYETFLITL---IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83
+ +L ETF I + R ++VDEA+ VM+ + P L F+ L L K +
Sbjct: 163 KKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKA 222
Query: 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIF 143
++++ M P+ Y+ ++ ++ F +M+ G PD +TY+++
Sbjct: 223 QEVFENMRD---RFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMV 279
Query: 144 ECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGIL 203
+ L K +V E M + +PT + + + E A++ + + +G+
Sbjct: 280 DILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMK 339
Query: 204 PLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI 237
A N L+ R+ +V R +EM ++ +
Sbjct: 340 ADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGV 373
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 127/272 (46%), Gaps = 6/272 (2%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
GW + N++EA + + +M++ P+ ++A+ L L+R + +A+K VMK +
Sbjct: 306 GWCRVRNLIEAARIWNDMIDH-GLKPD-IVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGP 363
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P ++ ++ + K + ++ +D MV G L P+ +Y ++ +D V
Sbjct: 364 CPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSG--LQPDAAVYTCLITGFGTQKKLDTV 421
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+ +M G PD TYN + + + K +++MI+NE +P+ +
Sbjct: 422 YELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKS 481
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240
A E +W+ +++ GI P + S VL+ GL + G+ + R+ EEML++ +
Sbjct: 482 YFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTP 541
Query: 241 DVTMQKLKKAFYNESRSMRDRFDSLERRWKTS 272
+ K F+ + + F+ L +R K S
Sbjct: 542 LIDYNKFAADFHRGGQP--EIFEELAQRAKFS 571
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540,
mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2
SV=1
Length = 599
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 127/272 (46%), Gaps = 6/272 (2%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
GW + N++EA + + +M++ P+ ++A+ L L+R + +A+K VMK +
Sbjct: 307 GWCRVRNLIEAARIWNDMIDH-GLKPD-IVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGP 364
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P ++ ++ + K + ++ +D MV G L P+ +Y ++ +D V
Sbjct: 365 CPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSG--LQPDAAVYTCLITGFGTQKKLDTV 422
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+ +M G PD TYN + + + K +++MI+NE +P+ +
Sbjct: 423 YELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKS 482
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240
A E +W+ +++ GI P + S VL+ GL + G+ + R+ EEML++ +
Sbjct: 483 YFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTP 542
Query: 241 DVTMQKLKKAFYNESRSMRDRFDSLERRWKTS 272
+ K F+ + + F+ L +R K S
Sbjct: 543 LIDYNKFAADFHRGGQP--EIFEELAQRAKFS 572
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 109/249 (43%), Gaps = 5/249 (2%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
GW + + A K F EM+ER +LAY L L + VD K + M
Sbjct: 217 GWARIRDASGARKVFDEMLERN--CVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGL 274
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P F+ + D ++ D M ++L+PN+ +N ++ LC N VD+
Sbjct: 275 KPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKR--YDLVPNVYTFNHIIKTLCKNEKVDDA 332
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+ D+M+ GA PD+ TYN I + +V+ M + + P + +
Sbjct: 333 YLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKL 392
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGL-RNLGRLSDVRRFAEEMLNRRILI 239
L+ + A EIW + E P A+ V++ GL R G+L + R+ E M++ I
Sbjct: 393 LIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPP 452
Query: 240 YDVTMQKLK 248
Y T++ L+
Sbjct: 453 YSTTVEMLR 461
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%)
Query: 94 GFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVH 153
GF ++P+ Y+ +V D + FD+M+ D L YN + + L K+ V
Sbjct: 201 GFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVD 260
Query: 154 EVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLL 213
F EM +P + A I DA + A ++ + + ++P + N ++
Sbjct: 261 GGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHII 320
Query: 214 VGLRNLGRLSDVRRFAEEMLNR 235
L ++ D +EM+ +
Sbjct: 321 KTLCKNEKVDDAYLLLDEMIQK 342
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 124/260 (47%), Gaps = 15/260 (5%)
Query: 1 GWEKEGNVVEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 59
GW +E N++ ++ EM E FE P+ V+AY + + K+ +EA++F M+ N
Sbjct: 241 GWGQELNLLRVDEVNREMKDEGFE--PD-VVAYGIIINAHCKAKKYEEAIRFFNEMEQRN 297
Query: 60 CFPTLKFFS---NALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNND 116
C P+ F N L KLND+ ++ ++ GF L YNA+VG C +
Sbjct: 298 CKPSPHIFCSLINGLGSEKKLNDA---LEFFERSKSSGFPL--EAPTYNALVGAYCWSQR 352
Query: 117 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCAT 176
+++ ++ D+M G P++ TY++I LI+ ++ E + M +PT
Sbjct: 353 MEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEI 409
Query: 177 AITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR 236
+ M + + + AI+IW+ + G+LP + L+ L + +L + + EML+
Sbjct: 410 MVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVG 469
Query: 237 ILIYDVTMQKLKKAFYNESR 256
I +LK+ +E R
Sbjct: 470 IRPPGHMFSRLKQTLLDEGR 489
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 1/163 (0%)
Query: 104 YNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMI 163
+N ++ L + +V + + FD+M PD +Y ++ E + + V+ EM
Sbjct: 200 FNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMK 259
Query: 164 KNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLS 223
++P + I A + E AI +N + + P L+ GL + +L+
Sbjct: 260 DEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLN 319
Query: 224 DVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRSMRDRFDSLE 266
D F E + + T L A Y S+ M D + +++
Sbjct: 320 DALEFFERSKSSGFPLEAPTYNALVGA-YCWSQRMEDAYKTVD 361
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 112/251 (44%), Gaps = 8/251 (3%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
K+G+ +A F EM + V+ Y + + L + D+ K LR M G N P
Sbjct: 257 KDGSFDDALSLFNEM--EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD 314
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ FS +D+ VK +L++ M+ G + P+ I YN+++ C N + +
Sbjct: 315 VVTFSALIDVFVKEGKLLEAKELYNEMITRG--IAPDTITYNSLIDGFCKENCLHEANQM 372
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
FD MV G PD +TY+++ K K+V + F E+ P + T +
Sbjct: 373 FDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ 432
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR----ILI 239
+ + A E++ ++ G+ P + +LL GL + G L+ E+M R I I
Sbjct: 433 SGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGI 492
Query: 240 YDVTMQKLKKA 250
Y++ + + A
Sbjct: 493 YNIIIHGMCNA 503
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 103/234 (44%), Gaps = 4/234 (1%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
K GN A F +M ER V+ Y + +L + D+AL M+ +
Sbjct: 222 KSGNSALALDLFRKMEER--NIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ +S+ + L ++ M IG N++P+++ ++A++ + +
Sbjct: 280 VVTYSSLIGGLCNDGKWDDGAKMLREM--IGRNIIPDVVTFSALIDVFVKEGKLLEAKEL 337
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
+++M+ G PD++TYN + + K +HE F M+ +P + + I
Sbjct: 338 YNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCK 397
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI 237
A + + ++ I G++P + N L++G G+L+ + +EM++R +
Sbjct: 398 AKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 451
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 2/176 (1%)
Query: 81 THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYN 140
+ V L D MV + P+L+ + ++ LC V D+MV +G PD +TY
Sbjct: 157 SEAVALVDRMVEM--KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYG 214
Query: 141 MIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN 200
+ L K+ + F +M + + + + + I L + A+ ++N +
Sbjct: 215 PVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMK 274
Query: 201 GILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256
GI + + L+ GL N G+ D + EM+ R I+ VT L F E +
Sbjct: 275 GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 67/148 (45%), Gaps = 14/148 (9%)
Query: 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLW 87
+ + Y T ++ + +++ A + + M P++ + LD L + ++++
Sbjct: 419 NTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIF 478
Query: 88 DIM------VGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNM 141
+ M +GIG +YN ++ +CN + VD+ + F + G PD +TYN+
Sbjct: 479 EKMQKSRMTLGIG--------IYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNV 530
Query: 142 IFECLIKNKKVHEVENFFHEMIKNEWQP 169
+ L K + E + F +M ++ P
Sbjct: 531 MIGGLCKKGSLSEADMLFRKMKEDGCTP 558
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 6/184 (3%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ + G + A + F EMV R P V+ Y L L ++++AL+ M+
Sbjct: 429 GFCQSGKLNAAKELFQEMVSR--GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRM 486
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIG-FNLMPNLIMYNAVVGLLCNNNDVDN 119
+ ++ I+ + +++ W + + + P+++ YN ++G LC +
Sbjct: 487 TLGIGIYNI---IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSE 543
Query: 120 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAIT 179
F +M G PD TYN++ + + EM + I
Sbjct: 544 ADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVID 603
Query: 180 MLLD 183
ML D
Sbjct: 604 MLSD 607
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 91/254 (35%), Gaps = 39/254 (15%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ EG V EA MVE + P+ V T + L +V EAL + M
Sbjct: 149 GFCLEGRVSEAVALVDRMVE-MKQRPDLV-TVSTLINGLCLKGRVSEALVLIDRMVEYGF 206
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P + L+ L K +S + L+ M N+ +++ Y+ V+ LC + D+
Sbjct: 207 QPDEVTYGPVLNRLCKSGNSALALDLFRKMEE--RNIKASVVQYSIVIDSLCKDGSFDDA 264
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
F++M G D +TY+ + L + K + EMI P
Sbjct: 265 LSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIP----------- 313
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240
D F+ I ++ E G+L + + EM+ R I
Sbjct: 314 ----DVVTFSALIDVFVKE--------------------GKLLEAKELYNEMITRGIAPD 349
Query: 241 DVTMQKLKKAFYNE 254
+T L F E
Sbjct: 350 TITYNSLIDGFCKE 363
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 58/158 (36%)
Query: 99 PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENF 158
P+ I ++ +V C V D+MV PD +T + + L +V E
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 197
Query: 159 FHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRN 218
M++ +QP + + L + A++++ + E I ++++ L
Sbjct: 198 IDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCK 257
Query: 219 LGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256
G D EM + I VT L N+ +
Sbjct: 258 DGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 295
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 4/248 (1%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
KEGN+ +A K F E+ +R P V+++ T + + +DE + M+ P
Sbjct: 252 KEGNISDAQKVFDEITKR-SLQPT-VVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPD 309
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ +S ++ L K N L+D M G L+PN +++ ++ N ++D +
Sbjct: 310 VFTYSALINALCKENKMDGAHGLFDEMCKRG--LIPNDVIFTTLIHGHSRNGEIDLMKES 367
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
+ +M+ G PD + YN + KN + N MI+ +P + T I
Sbjct: 368 YQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCR 427
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVT 243
+ E A+EI + +NGI + L+ G+ GR+ D R EML I DVT
Sbjct: 428 GGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVT 487
Query: 244 MQKLKKAF 251
+ AF
Sbjct: 488 YTMMMDAF 495
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/226 (18%), Positives = 98/226 (43%), Gaps = 3/226 (1%)
Query: 10 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 69
A+ F +VE P + +IT + +A++ R+ + ++ N
Sbjct: 152 SASSVFISLVE-MRVTPMCGFLVDALMITYTDLGFIPDAIQCFRLSRKHRFDVPIRGCGN 210
Query: 70 ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129
LD ++KLN + + ++ GF L N+ ++N ++ C ++ + + FD++
Sbjct: 211 LLDRMMKLNPTGTIWGFYMEILDAGFPL--NVYVFNILMNKFCKEGNISDAQKVFDEITK 268
Query: 130 HGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEF 189
P +++N + K + E H+M K+ +P + I L ++ +
Sbjct: 269 RSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDG 328
Query: 190 AIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235
A +++ + + G++P + L+ G G + ++ ++ML++
Sbjct: 329 AHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSK 374
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 7/153 (4%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G KEG V++A + EM+ R P+ V Y + + K L+ M+ +
Sbjct: 459 GMCKEGRVIDAERALREML-RAGIKPDDV-TYTMMMDAFCKKGDAQTGFKLLKEMQSDGH 516
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P++ ++ L+ L KL + L D M+ IG ++P+ I YN LL ++ N
Sbjct: 517 VPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIG--VVPDDITYNT---LLEGHHRHANS 571
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVH 153
+ + Q G D +Y I L + K H
Sbjct: 572 SKRYIQKPEIGIVADLASYKSIVNELDRASKDH 604
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 10/208 (4%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G + G + EA K F EMVE+ + P V+ Y + + L K VDEA+++L MK +
Sbjct: 201 GLCRFGRIDEAKKLFTEMVEK-DCAPT-VVTYTSLINGLCGSKNVDEAMRYLEEMKSKGI 258
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P + +S+ +D L K S ++L+++M+ G PN++ Y ++ LC +
Sbjct: 259 EPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCR--PNMVTYTTLITGLCKEQKIQEA 316
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLN------C 174
D+M G PD+ Y + K E NF EMI P L
Sbjct: 317 VELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKT 376
Query: 175 ATAITMLLDADEPEFAIEIWNYILENGI 202
+ + L A+ P A ++ + GI
Sbjct: 377 SNEVVRGLCANYPSRAFTLYLSMRSRGI 404
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 100/235 (42%), Gaps = 7/235 (2%)
Query: 27 EHVLAYETFLITLIRG-KQVDEALKFLRV---MKGENCFPTLKFFSNALDILVKLNDSTH 82
E+ + E L+++ RG +V LRV MK +C P+ K + L ILV+ N
Sbjct: 80 ENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNL 139
Query: 83 TVQLWDIMVGIGFNLMPNLIMYNAVVGLLC-NNNDVDNVFRFFDQMVFHGAFPDSLTYNM 141
+ + M IG L P + N ++ LC N+ VD + F +M G PDS TY
Sbjct: 140 AFKFYKNMREIG--LPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGT 197
Query: 142 IFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENG 201
+ L + ++ E + F EM++ + PT + + I L + + A+ + G
Sbjct: 198 LISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKG 257
Query: 202 ILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256
I P + + L+ GL GR E M+ R VT L E +
Sbjct: 258 IEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQK 312
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 86/209 (41%), Gaps = 3/209 (1%)
Query: 26 PEHVLAYETFLITLIRGK-QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTV 84
P V + + L R VD LK M C P + + L +
Sbjct: 153 PPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAK 212
Query: 85 QLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 144
+L+ MV + P ++ Y +++ LC + +VD R+ ++M G P+ TY+ + +
Sbjct: 213 KLFTEMVEK--DCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMD 270
Query: 145 CLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILP 204
L K+ + + F M+ +P + T IT L + + A+E+ + + G+ P
Sbjct: 271 GLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKP 330
Query: 205 LEASANVLLVGLRNLGRLSDVRRFAEEML 233
++ G + + + F +EM+
Sbjct: 331 DAGLYGKVISGFCAISKFREAANFLDEMI 359
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 7/229 (3%)
Query: 15 FGEMVERFEWNPEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 69
G ++ E P+H L+Y L + K++D A+++L M C+P + ++
Sbjct: 360 LGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNT 419
Query: 70 ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129
L L K V++ + + G + P LI YN V+ L + D+M
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCS--PVLITYNTVIDGLAKAGKTGKAIKLLDEMRA 477
Query: 130 HGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEF 189
PD++TY+ + L + KV E FFHE + +P + + + L + + +
Sbjct: 478 KDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDR 537
Query: 190 AIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRIL 238
AI+ +++ G P E S +L+ GL G + E+ N+ ++
Sbjct: 538 AIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLM 586
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 107/253 (42%), Gaps = 4/253 (1%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
++ V A K EM +R P+ V+ Y + + + ++DEA+KFL M C P
Sbjct: 251 RDSGVGHAMKLLDEMRDR-GCTPD-VVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPN 308
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ + L + +L M+ GF+ P+++ +N ++ LC +
Sbjct: 309 VITHNIILRSMCSTGRWMDAEKLLADMLRKGFS--PSVVTFNILINFLCRKGLLGRAIDI 366
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
++M HG P+SL+YN + K KK+ + M+ P + T +T L
Sbjct: 367 LEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCK 426
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVT 243
+ E A+EI N + G P+ + N ++ GL G+ + +EM + + +T
Sbjct: 427 DGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTIT 486
Query: 244 MQKLKKAFYNESR 256
L E +
Sbjct: 487 YSSLVGGLSREGK 499
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 4/211 (1%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ KE + A + MV R + P+ ++ Y T L L + +V++A++ L + + C
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCY-PD-IVTYNTMLTALCKDGKVEDAVEILNQLSSKGC 445
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P L ++ +D L K + ++L D M +L P+ I Y+++VG L VD
Sbjct: 446 SPVLITYNTVIDGLAKAGKTGKAIKLLDEMRA--KDLKPDTITYSSLVGGLSREGKVDEA 503
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+FF + G P+++T+N I L K+++ +F MI +P + I
Sbjct: 504 IKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEG 563
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANV 211
L + A+E+ N + G++ ++ V
Sbjct: 564 LAYEGMAKEALELLNELCNKGLMKKSSAEQV 594
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 85/194 (43%), Gaps = 5/194 (2%)
Query: 39 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLM 98
++R +++E KFL M P + + + +L + ++ +I+ G G +
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSG--AV 169
Query: 99 PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENF 158
P++I YN ++ C +++N D+M PD +TYN I L + K+ +
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEV 226
Query: 159 FHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRN 218
M++ + P + I A+++ + + + G P + NVL+ G+
Sbjct: 227 LDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICK 286
Query: 219 LGRLSDVRRFAEEM 232
GRL + +F +M
Sbjct: 287 EGRLDEAIKFLNDM 300
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 112/288 (38%), Gaps = 46/288 (15%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ + G +A K E++E P+ V+ Y + + +++ AL L M +
Sbjct: 146 GFCRLGKTRKAAKIL-EILEGSGAVPD-VITYNVMISGYCKAGEINNALSVLDRM---SV 200
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P + ++ L L +++ D M + + P++I Y ++ C ++ V +
Sbjct: 201 SPDVVTYNTILRSLCDSGKLKQAMEVLDRM--LQRDCYPDVITYTILIEATCRDSGVGHA 258
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLN------- 173
+ D+M G PD +TYN++ + K ++ E F ++M + QP +
Sbjct: 259 MKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRS 318
Query: 174 -CATA---------ITMLLDADEPEF------------------AIEIWNYILENGILPL 205
C+T ML P AI+I + ++G P
Sbjct: 319 MCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPN 378
Query: 206 EASANVLLVGLRNLGRLSDVRRFAEEMLNRR----ILIYDVTMQKLKK 249
S N LL G ++ + E M++R I+ Y+ + L K
Sbjct: 379 SLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCK 426
>sp|Q9FX35|PP117_ARATH Pentatricopeptide repeat-containing protein At1g73400,
mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2
SV=2
Length = 568
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 126/286 (44%), Gaps = 17/286 (5%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--KGE 58
GW + + +A K EM+E PE+ Y + T + VDEA M KG
Sbjct: 277 GWCRVRDPKKAMKLLEEMIEAGH-KPEN-FTYCAAIDTFCQAGMVDEAADLFDFMITKGS 334
Query: 59 N-CFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDV 117
PT K F+ + L K + + +L M+ G +P++ Y V+ +C V
Sbjct: 335 AVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTG--CLPDVSTYKDVIEGMCMAEKV 392
Query: 118 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATA 177
D ++F D+M G PD +TYN L +N+K E + M+++ P+
Sbjct: 393 DEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNML 452
Query: 178 ITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI 237
I+M + D+P+ A W + + + + ++ GL + R + EE++N+ +
Sbjct: 453 ISMFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGL 512
Query: 238 ----LIYDVTMQKLK-----KAFYNESRSMRDRFD-SLERRWKTSQ 273
++D + +L KA + S M+ ++ S+ RR+ S+
Sbjct: 513 KLPYRVFDSFLMRLSEVGNLKAIHKVSEHMKKFYNHSMARRFALSE 558
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 10/168 (5%)
Query: 38 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS--THTVQLWDIMVGIGF 95
T + KQ + L MK N T+ L+IL K + TH VQ + I
Sbjct: 172 TKYKNKQFRIVIDMLDYMKRNN--KTVVLVDVLLEILRKYCERYLTH-VQKFAKRKRIRV 228
Query: 96 NLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFE--CLIKNKKVH 153
P + +N ++ LC V +M H PD+ T+N++F C +++ K
Sbjct: 229 KTQPEINAFNMLLDALCKCGLVKEGEALLRRMR-HRVKPDANTFNVLFFGWCRVRDPK-- 285
Query: 154 EVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENG 201
+ EMI+ +P AI A + A +++++++ G
Sbjct: 286 KAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKG 333
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 101/239 (42%), Gaps = 7/239 (2%)
Query: 19 VERFEWNPEHVL-----AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 73
+E F PE Y T + L + +++DEA+ L M+ E C P+ ++ +D
Sbjct: 207 IEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDG 266
Query: 74 LVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAF 133
L K D T +L D M G +PN + YN ++ LC +D ++MV
Sbjct: 267 LCKKGDLTRVTKLVDNMFLKG--CVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCI 324
Query: 134 PDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEI 193
P+ +TY + L+K ++ + M + + + I+ L + E A+ +
Sbjct: 325 PNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSL 384
Query: 194 WNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFY 252
W + E G P +VL+ GL G+ ++ + M+ L T L K F+
Sbjct: 385 WRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFF 443
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 3/215 (1%)
Query: 46 DEALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVG--IGFNLMPNLI 102
D+A+ M E C ++K F++ L++++ ++ +D +V + N+ PN +
Sbjct: 129 DKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGL 188
Query: 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEM 162
+N V+ LC VD F M PD TY + + L K +++ E EM
Sbjct: 189 SFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEM 248
Query: 163 IKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRL 222
P+P+ I L + ++ + + G +P E + N L+ GL G+L
Sbjct: 249 QSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKL 308
Query: 223 SDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS 257
E M++ + + DVT L + R+
Sbjct: 309 DKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRA 343
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 97/240 (40%), Gaps = 10/240 (4%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G KEG EA + +M E+ +++ Y + L R + +EA + L M C
Sbjct: 371 GLFKEGKAEEAMSLWRKMAEK--GCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGC 428
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P +S+ + K VQ+W M G + N Y+ ++ LC V
Sbjct: 429 LPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSR--NKFCYSVLIDGLCGVGRVKEA 486
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+ +M+ G PD++ Y+ I + L + +HEM+ E +P +
Sbjct: 487 MMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQE-EPKSQPDVVTYNI 545
Query: 181 LLDA----DEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDV-RRFAEEMLNR 235
LLD + A+++ N +L+ G P + N L L D R F EE++ R
Sbjct: 546 LLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVR 605
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 99/234 (42%), Gaps = 4/234 (1%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G K+G++ K M + P V Y T + L ++D+A+ L M C
Sbjct: 266 GLCKKGDLTRVTKLVDNMFLK-GCVPNEV-TYNTLIHGLCLKGKLDKAVSLLERMVSSKC 323
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P + ++ LVK +T V+L M G++L N +Y+ ++ L +
Sbjct: 324 IPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHL--NQHIYSVLISGLFKEGKAEEA 381
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+ +M G P+ + Y+++ + L + K +E + + MI + P ++ +
Sbjct: 382 MSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKG 441
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234
E A+++W + + G + +VL+ GL +GR+ + +ML
Sbjct: 442 FFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLT 495
>sp|Q9SZ20|PP339_ARATH Pentatricopeptide repeat-containing protein At4g26800
OS=Arabidopsis thaliana GN=At4g26800 PE=2 SV=2
Length = 514
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 113/247 (45%), Gaps = 8/247 (3%)
Query: 8 VVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 67
VV A + M +R +P +V+ Y + + L + ++ +A + L M + P + F
Sbjct: 209 VVPALEVLKRMKDR-GISP-NVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITF 266
Query: 68 SNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQM 127
S +D K + ++ +M+ + + PN+ Y++++ LC +N VD + D M
Sbjct: 267 SALIDAYAKRGKLSKVDSVYKMMIQMSID--PNVFTYSSLIYGLCMHNRVDEAIKMLDLM 324
Query: 128 VFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEP 187
+ G P+ +TY+ + K+ +V + +M + ++C T I A +
Sbjct: 325 ISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKI 384
Query: 188 EFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR----ILIYDVT 243
+ A+ ++ Y+ NG++P S N++L GL G + E M R I+ Y +
Sbjct: 385 DLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIM 444
Query: 244 MQKLKKA 250
+ + KA
Sbjct: 445 IHGMCKA 451
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/161 (18%), Positives = 73/161 (45%)
Query: 96 NLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEV 155
+ PN++ Y++++ LC + + + R +M P+ +T++ + + K K+ +V
Sbjct: 223 GISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKV 282
Query: 156 ENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVG 215
++ + MI+ P ++ I L + + AI++ + ++ G P + + L G
Sbjct: 283 DSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANG 342
Query: 216 LRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256
R+ D + ++M R + V+ L K ++ +
Sbjct: 343 FFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGK 383
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 92/237 (38%), Gaps = 3/237 (1%)
Query: 32 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWD-IM 90
Y L + + + D+A +M P++ F+ L + K+ + LW I
Sbjct: 53 YREVLRSGLHNIKFDDAFHLFVLMAYSYPLPSIVEFNKVLTAIAKMQMYDVVINLWKRIE 112
Query: 91 VGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 150
G + P+L N +V C + + +M+ G PD +T + + +
Sbjct: 113 NAEGIEISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSN 172
Query: 151 KVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASAN 210
+ + +M K + + I L A+E+ + + GI P + +
Sbjct: 173 SIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYS 232
Query: 211 VLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRSMRDRFDSLER 267
L+ GL GRL+D R EM +++I +T L A+ R + DS+ +
Sbjct: 233 SLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAY--AKRGKLSKVDSVYK 287
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/240 (19%), Positives = 93/240 (38%), Gaps = 3/240 (1%)
Query: 17 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 76
E E E +P+ + + R Q AL +L M P + S+ ++
Sbjct: 112 ENAEGIEISPD-LYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCL 170
Query: 77 LNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS 136
N V + M +G + ++++ ++ LC N V +M G P+
Sbjct: 171 SNSIKDAVYVAGQMEKMG--IKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNV 228
Query: 137 LTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNY 196
+TY+ + L K+ ++ + E HEM + P + + I + ++
Sbjct: 229 VTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKM 288
Query: 197 ILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256
+++ I P + + L+ GL R+ + + + M+++ VT L F+ SR
Sbjct: 289 MIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSR 348
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 123/280 (43%), Gaps = 35/280 (12%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ KEGN +A EM+ R P V+ Y + + ++ + ++ A++FL M+
Sbjct: 319 GYCKEGNFHQALVMHAEML-RHGLTPS-VITYTSLIHSMCKAGNMNRAMEFLDQMRVRGL 376
Query: 61 FPTLKFFSNALD-------------ILVKLNDS--THTVQLWDIMV-----------GIG 94
P + ++ +D +L ++ND+ + +V ++ ++ I
Sbjct: 377 CPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIA 436
Query: 95 F-------NLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 147
L P+++ Y+ V+ C + DVD R +MV G PD++TY+ + +
Sbjct: 437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496
Query: 148 KNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEA 207
+ ++ E + + EM++ P I + E A+++ N ++E G+LP
Sbjct: 497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVV 556
Query: 208 SANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKL 247
+ +VL+ GL R + +R ++ + DVT L
Sbjct: 557 TYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTL 596
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 115/269 (42%), Gaps = 25/269 (9%)
Query: 6 GNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 65
G + +A +M E+ +P+ V++Y T L R VDEAL+ R M + P
Sbjct: 429 GKMEDAIAVLEDMKEK-GLSPD-VVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTI 486
Query: 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFD 125
+S+ + + + L++ M+ +G L P+ Y A++ C D++ + +
Sbjct: 487 TYSSLIQGFCEQRRTKEACDLYEEMLRVG--LPPDEFTYTALINAYCMEGDLEKALQLHN 544
Query: 126 QMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDAD 185
+MV G PD +TY+++ L K + E + ++ E P+ + T T++ +
Sbjct: 545 EMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDV---TYHTLIENCS 601
Query: 186 EPEF------------------AIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRR 227
EF A +++ +L P + N+++ G G +
Sbjct: 602 NIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYT 661
Query: 228 FAEEMLNRRILIYDVTMQKLKKAFYNESR 256
+EM+ L++ VT+ L KA + E +
Sbjct: 662 LYKEMVKSGFLLHTVTVIALVKALHKEGK 690
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 93/226 (41%), Gaps = 4/226 (1%)
Query: 7 NVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 66
N+ A F EM+E + +P +V Y + +D AL M+ + C P +
Sbjct: 185 NISFAENVFKEMLES-QVSP-NVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVT 242
Query: 67 FSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQ 126
++ +D KL +L M G L PNLI YN V+ LC + V +
Sbjct: 243 YNTLIDGYCKLRKIDDGFKLLRSMALKG--LEPNLISYNVVINGLCREGRMKEVSFVLTE 300
Query: 127 MVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADE 186
M G D +TYN + + K H+ EM+++ P+ + + I + A
Sbjct: 301 MNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGN 360
Query: 187 PEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEM 232
A+E + + G+ P E + L+ G G +++ R EM
Sbjct: 361 MNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM 406
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 68/162 (41%)
Query: 96 NLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEV 155
L P++I Y +++ +C +++ F DQM G P+ TY + + + ++E
Sbjct: 340 GLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA 399
Query: 156 ENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVG 215
EM N + P+ + I + E AI + + E G+ P S + +L G
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459
Query: 216 LRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS 257
+ + R EM+ + I +T L + F + R+
Sbjct: 460 FCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRT 501
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 117 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKK-VHEVENFFHEMIKNEWQPTPLNCA 175
+D HG P L+YN + + I++K+ + EN F EM++++ P
Sbjct: 150 IDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYN 209
Query: 176 TAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSD----VRRFAEE 231
I A + A+ +++ + G LP + N L+ G L ++ D +R A +
Sbjct: 210 ILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALK 269
Query: 232 MLNRRILIYDVTMQKL 247
L ++ Y+V + L
Sbjct: 270 GLEPNLISYNVVINGL 285
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/247 (18%), Positives = 90/247 (36%), Gaps = 40/247 (16%)
Query: 11 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 70
A+ F + E ++ ++ + + R +D+AL + + + P + ++
Sbjct: 116 ASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAV 175
Query: 71 LDILVKLNDSTHTVQLWDIMVG--IGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMV 128
LD ++ S + + + + + PN+ YN ++ C ++D FD+M
Sbjct: 176 LDATIR---SKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKME 232
Query: 129 FHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPE 188
G P+ +TYN + + K +K+ + M +P +
Sbjct: 233 TKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLI---------------- 276
Query: 189 FAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLK 248
S NV++ GL GR+ +V EM R + +VT L
Sbjct: 277 -------------------SYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLI 317
Query: 249 KAFYNES 255
K + E
Sbjct: 318 KGYCKEG 324
Score = 31.2 bits (69), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 81 THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYN 140
T Q+++ M +G N P+ YN ++ C D+ + + +MV G ++T
Sbjct: 622 TEADQVFESM--LGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVI 679
Query: 141 MIFECLIKNKKVHEVENFFHEMIKN 165
+ + L K KV+E+ + ++++
Sbjct: 680 ALVKALHKEGKVNELNSVIVHVLRS 704
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 104/234 (44%), Gaps = 4/234 (1%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ K + +A + M + +++P+ V Y + +L ++D ALK L + +NC
Sbjct: 167 GFCKMNRIDDATRVLDRMRSK-DFSPDTV-TYNIMIGSLCSRGKLDLALKVLNQLLSDNC 224
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
PT+ ++ ++ + ++L D M+ G L P++ YN ++ +C VD
Sbjct: 225 QPTVITYTILIEATMLEGGVDEALKLMDEMLSRG--LKPDMFTYNTIIRGMCKEGMVDRA 282
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
F + G PD ++YN++ L+ K E E +M + P + + IT
Sbjct: 283 FEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITT 342
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234
L + E A+ + + E G+ P S + L+ GRL F E M++
Sbjct: 343 LCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS 396
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 110/248 (44%), Gaps = 5/248 (2%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
++G + EA M E+ P+ +Y+ + R ++D A++FL M + C P
Sbjct: 345 RDGKIEEAMNLLKLMKEK-GLTPD-AYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPD 402
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ ++ L L K + ++++ + +G + PN YN + L ++ D
Sbjct: 403 IVNYNTVLATLCKNGKADQALEIFGKLGEVGCS--PNSSSYNTMFSALWSSGDKIRALHM 460
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
+M+ +G PD +TYN + CL + V E +M E+ P+ + +
Sbjct: 461 ILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCK 520
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVT 243
A E AI + ++ NG P E + VL+ G+ G ++ A +++ R I + +
Sbjct: 521 AHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV-RIDAISEYS 579
Query: 244 MQKLKKAF 251
++L + F
Sbjct: 580 FKRLHRTF 587
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 4/216 (1%)
Query: 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 64
EG V EA K EM+ R P+ + Y T + + + VD A + +R ++ + C P +
Sbjct: 241 EGGVDEALKLMDEMLSR-GLKPD-MFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDV 298
Query: 65 KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFF 124
++ L L+ +L M + PN++ Y+ ++ LC + ++
Sbjct: 299 ISYNILLRALLNQGKWEEGEKLMTKMFSEKCD--PNVVTYSILITTLCRDGKIEEAMNLL 356
Query: 125 DQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDA 184
M G PD+ +Y+ + + ++ F MI + P +N T + L
Sbjct: 357 KLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKN 416
Query: 185 DEPEFAIEIWNYILENGILPLEASANVLLVGLRNLG 220
+ + A+EI+ + E G P +S N + L + G
Sbjct: 417 GKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG 452
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 111/254 (43%), Gaps = 21/254 (8%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMK--G 57
+ GN +E+ MV R +NP+ +L + LI+G + + +A++ + +++ G
Sbjct: 101 RSGNYIESLHLLETMV-RKGYNPDVILCTK-----LIKGFFTLRNIPKAVRVMEILEKFG 154
Query: 58 ENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDV 117
+ P + ++ ++ K+N ++ D M F+ P+ + YN ++G LC+ +
Sbjct: 155 Q---PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS--PDTVTYNIMIGSLCSRGKL 209
Query: 118 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATA 177
D + +Q++ P +TY ++ E + V E EM+ +P T
Sbjct: 210 DLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTI 269
Query: 178 ITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR- 236
I + + A E+ + G P S N+LL L N G+ + + +M + +
Sbjct: 270 IRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 329
Query: 237 ---ILIYDVTMQKL 247
++ Y + + L
Sbjct: 330 DPNVVTYSILITTL 343
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 116/256 (45%), Gaps = 8/256 (3%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ K G + EA EM + + + + + + ++ EA++ R M + C
Sbjct: 433 GFCKLGKIDEAYNVLNEMSA--DGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGC 490
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P + F++ + L ++++ H + L M+ G ++ N + YN ++ ++
Sbjct: 491 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG--VVANTVTYNTLINAFLRRGEIKEA 548
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+ ++MVF G+ D +TYN + + L + +V + + F +M+++ P+ ++C I
Sbjct: 549 RKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILING 608
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSD----VRRFAEEMLNRR 236
L + E A+E ++ G P + N L+ GL GR+ D R+ E +
Sbjct: 609 LCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD 668
Query: 237 ILIYDVTMQKLKKAFY 252
+ ++ M L K +
Sbjct: 669 TVTFNTLMSWLCKGGF 684
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 106/273 (38%), Gaps = 44/273 (16%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ G + +A +MV + P+ V Y + + + V AL+ L M+ + C
Sbjct: 362 GFVTHGRLDDAKAVLSDMVTSYGIVPD-VCTYNSLIYGYWKEGLVGLALEVLHDMRNKGC 420
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P + ++ +D KL + + M G L PN + +N ++ C + +
Sbjct: 421 KPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADG--LKPNTVGFNCLISAFCKEHRIPEA 478
Query: 121 FRFFDQMVFHGAFPD-----------------------------------SLTYNMIFEC 145
F +M G PD ++TYN +
Sbjct: 479 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 538
Query: 146 LIKNKKVHEVENFFHEMIKNEWQPTPLNCAT---AITMLLDADEPEFAIEIWNYILENGI 202
++ ++ E +EM+ +Q +PL+ T I L A E + A ++ +L +G
Sbjct: 539 FLRRGEIKEARKLVNEMV---FQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGH 595
Query: 203 LPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235
P S N+L+ GL G + + F +EM+ R
Sbjct: 596 APSNISCNILINGLCRSGMVEEAVEFQKEMVLR 628
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 2/187 (1%)
Query: 59 NCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVD 118
+C PT K ++ L+ILV N H V + + P L + V+ C N++D
Sbjct: 177 SCEPTFKSYNVVLEILVSGN--CHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEID 234
Query: 119 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAI 178
+ M HG P+S+ Y + L K +V+E EM P I
Sbjct: 235 SALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVI 294
Query: 179 TMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRIL 238
L D A ++ N +L G P + + L+ GL +GR+ + + I+
Sbjct: 295 LGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIV 354
Query: 239 IYDVTMQ 245
I++ +
Sbjct: 355 IFNTLIH 361
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 112/263 (42%), Gaps = 15/263 (5%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
KE + EA + F EM R P+ V + + + L ++ AL LR M E
Sbjct: 471 KEHRIPEAVEIFREM-PRKGCKPD-VYTFNSLISGLCEVDEIKHALWLLRDMISEGVVAN 528
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
++ ++ ++ + +L + MV G L + I YN+++ LC +VD
Sbjct: 529 TVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPL--DEITYNSLIKGLCRAGEVDKARSL 586
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
F++M+ G P +++ N++ L ++ V E F EM+ P + + I L
Sbjct: 587 FEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCR 646
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEML------NRR- 236
A E + ++ + GI P + N L+ L G + D +E + N R
Sbjct: 647 AGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRT 706
Query: 237 --ILIYDVTMQKL--KKAFYNES 255
IL+ + Q+ ++ FYN +
Sbjct: 707 WSILLQSIIPQETLDRRRFYNAA 729
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 72/171 (42%), Gaps = 2/171 (1%)
Query: 99 PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENF 158
PN+ Y +V C +D + ++M G P+++ +N + K ++ E
Sbjct: 422 PNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEI 481
Query: 159 FHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRN 218
F EM + +P + I+ L + DE + A+ + ++ G++ + N L+
Sbjct: 482 FREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLR 541
Query: 219 LGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAF--YNESRSMRDRFDSLER 267
G + + R+ EM+ + + ++T L K E R F+ + R
Sbjct: 542 RGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLR 592
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 4/156 (2%)
Query: 11 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 70
A F +M+ R P + + + ++D AL LR M C P +
Sbjct: 201 AANVFYDMLSR--KIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTL 258
Query: 71 LDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130
+ L K N +QL + M +G +P+ +N V+ LC + ++ + ++M+
Sbjct: 259 IHSLSKCNRVNEALQLLEEMFLMG--CVPDAETFNDVILGLCKFDRINEAAKMVNRMLIR 316
Query: 131 GAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNE 166
G PD +TY + L K +V ++ F+ + K E
Sbjct: 317 GFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPE 352
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 96/233 (41%), Gaps = 10/233 (4%)
Query: 26 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQ 85
P V+ Y+T + +L + +V+EAL+ L M C P + F++ + L K + +
Sbjct: 250 PNSVI-YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAK 308
Query: 86 LWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 145
+ + M+ GF P+ I Y ++ LC VD F + P+ + +N +
Sbjct: 309 MVNRMLIRGF--APDDITYGYLMNGLCKIGRVDAAKDLF----YRIPKPEIVIFNTLIHG 362
Query: 146 LIKNKKVHEVENFFHEMIKNEWQPTPLNCA--TAITMLLDADEPEFAIEIWNYILENGIL 203
+ + ++ + + +M+ + + P C + I A+E+ + + G
Sbjct: 363 FVTHGRLDDAKAVLSDMVTS-YGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCK 421
Query: 204 PLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256
P S +L+ G LG++ + EM + V L AF E R
Sbjct: 422 PNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHR 474
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 15/255 (5%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK-FLRVMKGEN 59
G K + EA K M+ R + P+ + Y + L + +VD A F R+ K
Sbjct: 296 GLCKFDRINEAAKMVNRMLIR-GFAPDDI-TYGYLMNGLCKIGRVDAAKDLFYRIPK--- 350
Query: 60 CFPTLKFFSNALDILV---KLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNND 116
P + F+ + V +L+D+ L D++ G ++P++ YN+++
Sbjct: 351 --PEIVIFNTLIHGFVTHGRLDDAKAV--LSDMVTSYG--IVPDVCTYNSLIYGYWKEGL 404
Query: 117 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCAT 176
V M G P+ +Y ++ + K K+ E N +EM + +P +
Sbjct: 405 VGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNC 464
Query: 177 AITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR 236
I+ A+EI+ + G P + N L+ GL + + +M++
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG 524
Query: 237 ILIYDVTMQKLKKAF 251
++ VT L AF
Sbjct: 525 VVANTVTYNTLINAF 539
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 110/257 (42%), Gaps = 6/257 (2%)
Query: 1 GWEKEGNVVEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 59
G+ K G A + EM+ F N ++ + + L D AL+F+ M N
Sbjct: 422 GYCKNGQADNAERLLKEMLSIGFNVNQG---SFTSVICLLCSHLMFDSALRFVGEMLLRN 478
Query: 60 CFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDN 119
P + + L K + ++LW + GF + + NA++ LC +D
Sbjct: 479 MSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGF--VVDTRTSNALLHGLCEAGKLDE 536
Query: 120 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAIT 179
FR +++ G D ++YN + KK+ E F EM+K +P + I
Sbjct: 537 AFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILIC 596
Query: 180 MLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILI 239
L + ++ E AI+ W+ NG+LP + +V++ G R + + F +EM+++ +
Sbjct: 597 GLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQP 656
Query: 240 YDVTMQKLKKAFYNESR 256
V L +A+ R
Sbjct: 657 NTVVYNHLIRAYCRSGR 673
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 100/231 (43%), Gaps = 4/231 (1%)
Query: 17 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 76
+MVER P ++ Y + L R K++ +A L+ M + P + ++N +D ++
Sbjct: 333 KMVER-GMEPT-LITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIE 390
Query: 77 LNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS 136
+++ D+MV G +L + YN ++ C N DN R +M+ G +
Sbjct: 391 AGSLNKAIEIKDLMVSKGLSLTSS--TYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQ 448
Query: 137 LTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNY 196
++ + L + F EM+ P T I+ L + A+E+W
Sbjct: 449 GSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQ 508
Query: 197 ILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKL 247
L G + ++N LL GL G+L + R +E+L R ++ V+ L
Sbjct: 509 FLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTL 559
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 93/201 (46%), Gaps = 5/201 (2%)
Query: 35 FLITLIRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGI 93
L +L+R + + + F V KG + P + F+ A++ K V+L+ M
Sbjct: 245 LLTSLVRANEFQKCCEAFDVVCKGVS--PDVYLFTTAINAFCKGGKVEEAVKLFSKMEEA 302
Query: 94 GFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVH 153
G + PN++ +N V+ L D F F ++MV G P +TY+++ + L + K++
Sbjct: 303 G--VAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIG 360
Query: 154 EVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLL 213
+ EM K + P + I ++A AIEI + ++ G+ ++ N L+
Sbjct: 361 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 420
Query: 214 VGLRNLGRLSDVRRFAEEMLN 234
G G+ + R +EML+
Sbjct: 421 KGYCKNGQADNAERLLKEMLS 441
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 93/230 (40%), Gaps = 4/230 (1%)
Query: 17 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 76
EMV+R P++ Y + L +V+EA++F K P + +S +D K
Sbjct: 578 EMVKR-GLKPDNY-TYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCK 635
Query: 77 LNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS 136
+ + +D M+ N+ PN ++YN ++ C + + + M G P+S
Sbjct: 636 AERTEEGQEFFDEMMSK--NVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNS 693
Query: 137 LTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNY 196
TY + + + +V E + F EM +P + I + +
Sbjct: 694 ATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLRE 753
Query: 197 ILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQK 246
+ + P + + V++ G G +++ R EM + I+ +T ++
Sbjct: 754 MHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKE 803
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 38 TLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGI 93
+LI+G +V+EA M+ E P + ++ +D KL L M
Sbjct: 698 SLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSK 757
Query: 94 GFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVH 153
N+ PN I Y ++G + +V R ++M G PDS+TY +K V
Sbjct: 758 --NVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVL 815
Query: 154 EV 155
E
Sbjct: 816 EA 817
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 94/199 (47%), Gaps = 5/199 (2%)
Query: 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 61
+ K G + EA K EM+E P+ V+ + + TL + +VDEA K MK
Sbjct: 513 YSKVGEIDEAIKLLSEMMEN-GCEPD-VIVVNSLINTLYKADRVDEAWKMFMRMKEMKLK 570
Query: 62 PTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVF 121
PT+ ++ L L K ++L++ MV G PN I +N + LC N++V
Sbjct: 571 PTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG--CPPNTITFNTLFDCLCKNDEVTLAL 628
Query: 122 RFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITML 181
+ +M+ G PD TYN I L+KN +V E FFH+M K + P + T + +
Sbjct: 629 KMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVY-PDFVTLCTLLPGV 687
Query: 182 LDADEPEFAIEIWNYILEN 200
+ A E A +I L N
Sbjct: 688 VKASLIEDAYKIITNFLYN 706
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 4/232 (1%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
K GN EA T M ++ H Y T + L+R ++D+AL+ M+ PT
Sbjct: 375 KAGNFGEAFDTLDVMRDQGILPNLHT--YNTLICGLLRVHRLDDALELFGNMESLGVKPT 432
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ +D K DS ++ ++ M G + PN++ NA + L +
Sbjct: 433 AYTYIVFIDYYGKSGDSVSALETFEKMKTKG--IAPNIVACNASLYSLAKAGRDREAKQI 490
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
F + G PDS+TYNM+ +C K ++ E EM++N +P + + I L
Sbjct: 491 FYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYK 550
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235
AD + A +++ + E + P + N LL GL G++ + E M+ +
Sbjct: 551 ADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQK 602
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 83/195 (42%), Gaps = 2/195 (1%)
Query: 31 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIM 90
Y + ++ L + + +D + L+ M+ P + F+ + +L + ++ M
Sbjct: 225 TYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRM 284
Query: 91 VGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 150
G P+++ Y ++ LC +D F++M PD +TY + + N+
Sbjct: 285 DDEGCG--PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNR 342
Query: 151 KVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASAN 210
+ V+ F+ EM K+ P + + L A A + + + + GILP + N
Sbjct: 343 DLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYN 402
Query: 211 VLLVGLRNLGRLSDV 225
L+ GL + RL D
Sbjct: 403 TLICGLLRVHRLDDA 417
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 8/235 (3%)
Query: 1 GWEKEGNVVEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALK-FLRVMKGE 58
+ K G + E + + EM E N + + + L++ VD+AL + +M
Sbjct: 829 AYGKSGKIDELFELYKEMSTHECEAN---TITHNIVISGLVKAGNVDDALDLYYDLMSDR 885
Query: 59 NCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVD 118
+ PT + +D L K QL++ M+ G PN +YN ++ + D
Sbjct: 886 DFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCR--PNCAIYNILINGFGKAGEAD 943
Query: 119 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAI 178
F +MV G PD TY+++ +CL +V E ++F E+ ++ P + I
Sbjct: 944 AACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLII 1003
Query: 179 TMLLDADEPEFAIEIWNYI-LENGILPLEASANVLLVGLRNLGRLSDVRRFAEEM 232
L + E A+ ++N + GI P + N L++ L G + + + E+
Sbjct: 1004 NGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEI 1058
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 5/161 (3%)
Query: 95 FNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHE 154
+ P L YN ++G L + ++ F Q+ G PD TYN + + K+ K+ E
Sbjct: 779 LGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDE 838
Query: 155 VENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEI-WNYILENGILPLEASANVLL 213
+ + EM +E + + I+ L+ A + A+++ ++ + + P + L+
Sbjct: 839 LFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLI 898
Query: 214 VGLRNLGRLSDVRRFAEEMLNR----RILIYDVTMQKLKKA 250
GL GRL + ++ E ML+ IY++ + KA
Sbjct: 899 DGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKA 939
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 83/205 (40%), Gaps = 5/205 (2%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G K G + EA + F M++ + P + Y + + + D A + M E
Sbjct: 900 GLSKSGRLYEAKQLFEGMLD-YGCRPNCAI-YNILINGFGKAGEADAACALFKRMVKEGV 957
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P LK +S +D L + + + + G N P+++ YN ++ L ++ ++
Sbjct: 958 RPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLN--PDVVCYNLIINGLGKSHRLEEA 1015
Query: 121 FRFFDQM-VFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAIT 179
F++M G PD TYN + L V E ++E+ + +P I
Sbjct: 1016 LVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIR 1075
Query: 180 MLLDADEPEFAIEIWNYILENGILP 204
+ +PE A ++ ++ G P
Sbjct: 1076 GYSLSGKPEHAYAVYQTMVTGGFSP 1100
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 90/208 (43%), Gaps = 2/208 (0%)
Query: 31 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIM 90
+Y + L++ + EA++ R M E P+L+ +S+ + L K D + L M
Sbjct: 190 SYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEM 249
Query: 91 VGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 150
+G L PN+ + + +L ++ + +M G PD +TY ++ + L +
Sbjct: 250 ETLG--LKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTAR 307
Query: 151 KVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASAN 210
K+ + F +M +P + T + D + + + W+ + ++G +P +
Sbjct: 308 KLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFT 367
Query: 211 VLLVGLRNLGRLSDVRRFAEEMLNRRIL 238
+L+ L G + + M ++ IL
Sbjct: 368 ILVDALCKAGNFGEAFDTLDVMRDQGIL 395
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 8/205 (3%)
Query: 10 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE--ALKFLRVMKGENCFPTLKFF 67
+A + FG M E P AY + GK D AL+ MK + P +
Sbjct: 416 DALELFGNM-ESLGVKPT---AYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVAC 471
Query: 68 SNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQM 127
+ +L L K Q++ + IG L+P+ + YN ++ ++D + +M
Sbjct: 472 NASLYSLAKAGRDREAKQIFYGLKDIG--LVPDSVTYNMMMKCYSKVGEIDEAIKLLSEM 529
Query: 128 VFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEP 187
+ +G PD + N + L K +V E F M + + +PT + T + L +
Sbjct: 530 MENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKI 589
Query: 188 EFAIEIWNYILENGILPLEASANVL 212
+ AIE++ +++ G P + N L
Sbjct: 590 QEAIELFEGMVQKGCPPNTITFNTL 614
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 80/218 (36%), Gaps = 4/218 (1%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
+ G + EA + M + E V+ Y + L +++D A + MK P
Sbjct: 270 RAGKINEAYEILKRMDD--EGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPD 327
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ LD D Q W M G +P+++ + +V LC + F
Sbjct: 328 RVTYITLLDRFSDNRDLDSVKQFWSEMEKDGH--VPDVVTFTILVDALCKAGNFGEAFDT 385
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
D M G P+ TYN + L++ ++ + F M +PT I
Sbjct: 386 LDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGK 445
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGR 221
+ + A+E + + GI P + N L L GR
Sbjct: 446 SGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGR 483
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 3/215 (1%)
Query: 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLW- 87
V Y L + ++DE + + M C + + LVK + + L+
Sbjct: 820 VATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYY 879
Query: 88 DIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 147
D+M F+ P Y ++ L + + + F+ M+ +G P+ YN++
Sbjct: 880 DLMSDRDFS--PTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFG 937
Query: 148 KNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEA 207
K + F M+K +P + + L + + + + E+G+ P
Sbjct: 938 KAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVV 997
Query: 208 SANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDV 242
N+++ GL RL + EM R + D+
Sbjct: 998 CYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDL 1032
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 5/175 (2%)
Query: 95 FNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHE 154
F + N YN ++ LL + + +M+ G P TY+ + L K + +
Sbjct: 182 FGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDS 241
Query: 155 VENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLV 214
V EM +P I +L A + A EI + + G P + VL+
Sbjct: 242 VMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLID 301
Query: 215 GLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRSMRDRFDSLERRW 269
L +L + E+M R VT L F + RD DS+++ W
Sbjct: 302 ALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDN----RD-LDSVKQFW 351
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 4/229 (1%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
KEG +VEA K + EM++R +P+ + Y + + ++DEA +M ++CFP
Sbjct: 340 KEGKLVEAEKLYDEMIKR-SIDPD-IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 397
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ +S + K ++L+ M G L+ N + Y ++ D DN
Sbjct: 398 VVTYSTLIKGFCKAKRVEEGMELFREMSQRG--LVGNTVTYTTLIHGFFQARDCDNAQMV 455
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
F QMV G P+ LTYN++ + L KN K+ + F + ++ +P I +
Sbjct: 456 FKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCK 515
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEM 232
A + E E++ + G+ P + N ++ G G + ++M
Sbjct: 516 AGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKM 564
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 14/241 (5%)
Query: 30 LAYETFLITL-------IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82
L YE ++TL K++ +A+ + M P F+ + L N ++
Sbjct: 147 LGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASE 206
Query: 83 TVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMI 142
V L D MV G P+L+ Y VV LC D+D +M D + YN I
Sbjct: 207 AVALVDQMVQRG--CQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTI 264
Query: 143 FECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI 202
+ L K K + + N F EM +P ++ I+ L + A + + ++E I
Sbjct: 265 IDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKI 324
Query: 203 LPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRSMRDRF 262
P + + L+ G+L + + +EM+ R I T L F M DR
Sbjct: 325 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF-----CMHDRL 379
Query: 263 D 263
D
Sbjct: 380 D 380
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 6/226 (2%)
Query: 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWD 88
V Y + + L + +A + L M P + FS +D VK +L+D
Sbjct: 293 VFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 352
Query: 89 IMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148
M+ + P++ Y++++ C ++ +D F+ M+ FP+ +TY+ + + K
Sbjct: 353 EMIKRSID--PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCK 410
Query: 149 NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEAS 208
K+V E F EM + + T I A + + A ++ ++ G+ P +
Sbjct: 411 AKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILT 470
Query: 209 ANVLLVGLRNLGRLSDV----RRFAEEMLNRRILIYDVTMQKLKKA 250
N+LL GL G+L+ + I Y++ ++ + KA
Sbjct: 471 YNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKA 516
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 103/256 (40%), Gaps = 4/256 (1%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ + +A +MVE + P+ + T + L + EA+ + M C
Sbjct: 162 GYCHSKRISDAVALVDQMVE-MGYKPD-TFTFTTLIHGLFLHNKASEAVALVDQMVQRGC 219
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P L + ++ L K D + L M + ++++YN ++ LC +D+
Sbjct: 220 QPDLVTYGTVVNGLCKRGDIDLALSLLKKMEK--GKIEADVVIYNTIIDGLCKYKHMDDA 277
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
F +M G PD TY+ + CL + + +MI+ + P + + I
Sbjct: 278 LNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 337
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240
+ + A ++++ +++ I P + + L+ G RL + + E M+++
Sbjct: 338 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 397
Query: 241 DVTMQKLKKAFYNESR 256
VT L K F R
Sbjct: 398 VVTYSTLIKGFCKAKR 413
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 102/281 (36%), Gaps = 68/281 (24%)
Query: 44 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIM--VGIGFNLM--- 98
+VD+A+ M FP++ F+ L + K+N + L + M +GI +L
Sbjct: 63 KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122
Query: 99 ----------------------------PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130
P+++ ++++ C++ + + DQMV
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 131 GAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFA 190
G PD+ T+ + L + K E +M++ QP + T + L + + A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 191 IE---------------IWNYILEN--------------------GILPLEASANVLLVG 215
+ I+N I++ GI P + + L+
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302
Query: 216 LRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256
L N GR SD R +M+ R+I VT L AF E +
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 343
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 5/222 (2%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ K V E + F EM +R + + Y T + + + D A + M
Sbjct: 407 GFCKAKRVEEGMELFREMSQRGLVG--NTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGV 464
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P + ++ LD L K + +++ + + P++ YN ++ +C V++
Sbjct: 465 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQR--STMEPDIYTYNIMIEGMCKAGKVEDG 522
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+ F + G P+ + YN + + E ++ +M ++ P T I
Sbjct: 523 WELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRA 582
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRL 222
L + E + E+ + G +AS L+ + + GRL
Sbjct: 583 RLRDGDREASAELIKEMRSCGFAG-DASTIGLVTNMLHDGRL 623
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 73/167 (43%), Gaps = 5/167 (2%)
Query: 69 NALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMV 128
N L ++K++D+ V L+ MV P+++ +N ++ + N + V +QM
Sbjct: 56 NRLSDIIKVDDA---VDLFGDMVK--SRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQ 110
Query: 129 FHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPE 188
G D TY++ C + ++ +M+K ++P + ++ + +
Sbjct: 111 TLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRIS 170
Query: 189 FAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235
A+ + + ++E G P + L+ GL + S+ ++M+ R
Sbjct: 171 DAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQR 217
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 6/226 (2%)
Query: 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWD 88
+ Y T + L + +A + LR M P + FF+ +D VK + L+
Sbjct: 219 AVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYK 278
Query: 89 IMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148
M I +++PN+ YN+++ C + + + FD MV G FPD +TYN + K
Sbjct: 279 EM--IRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCK 336
Query: 149 NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEAS 208
+K+V + F EM T I A + A +++N +++ G+ P +
Sbjct: 337 SKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVT 396
Query: 209 ANVLLVGLRNLGRLSDVRRFAEEM----LNRRILIYDVTMQKLKKA 250
N+LL L N G++ E++ ++ I+ Y++ +Q L +
Sbjct: 397 YNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRT 442
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 109/246 (44%), Gaps = 8/246 (3%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
KEGN++EA + EM+ R P +V Y + + + +A +M + CFP
Sbjct: 266 KEGNLLEARNLYKEMIRR-SVVP-NVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPD 323
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ ++ + K ++L+ M G L+ + YN ++ C ++ +
Sbjct: 324 VVTYNTLITGFCKSKRVEDGMKLFCEMTYQG--LVGDAFTYNTLIHGYCQAGKLNVAQKV 381
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
F++MV G PD +TYN++ +CL N K+ + ++ K+E + I L
Sbjct: 382 FNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCR 441
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGL--RNLGRLSD--VRRFAEEMLNRRILI 239
D+ + A ++ + G+ P + ++ GL + L R +D RR E+ I
Sbjct: 442 TDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERI 501
Query: 240 YDVTMQ 245
YD T++
Sbjct: 502 YDETLR 507
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 2/195 (1%)
Query: 62 PTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVF 121
P++ + L+ + N V L D M G GF +PN+++YN V+ LC N D++N
Sbjct: 147 PSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGF--VPNVVIYNTVINGLCKNRDLNNAL 204
Query: 122 RFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITML 181
F M G D++TYN + L + + + +M+K + P + I
Sbjct: 205 EVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTF 264
Query: 182 LDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYD 241
+ A ++ ++ ++P + N L+ G G L D + + M+++
Sbjct: 265 VKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDV 324
Query: 242 VTMQKLKKAFYNESR 256
VT L F R
Sbjct: 325 VTYNTLITGFCKSKR 339
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 78/194 (40%), Gaps = 2/194 (1%)
Query: 44 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIM 103
+ D+A M P++ F+ L ++ K+N + L+ M +G + +L
Sbjct: 59 KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGIS--HDLYS 116
Query: 104 YNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMI 163
+ ++ C + + +M+ G P +T + + + E + M
Sbjct: 117 FTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMD 176
Query: 164 KNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLS 223
+ P + T I L + A+E++ + + GI + N L+ GL N GR +
Sbjct: 177 GFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWT 236
Query: 224 DVRRFAEEMLNRRI 237
D R +M+ R+I
Sbjct: 237 DAARLLRDMVKRKI 250
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 99/217 (45%), Gaps = 4/217 (1%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
KEG +VEA K + EM++R +P+ + Y + + ++DEA +M ++CFP
Sbjct: 342 KEGKLVEAEKLYDEMIKR-SIDPD-IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 399
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ ++ ++ K V+L+ M G L+ N + Y ++ D DN
Sbjct: 400 VVTYNTLINGFCKAKRIDEGVELFREMSQRG--LVGNTVTYTTLIHGFFQARDCDNAQMV 457
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
F QMV G P+ +TYN + + L KN K+ + F + +++ +PT I +
Sbjct: 458 FKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 517
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLG 220
A + E +++ + G+ P N ++ G G
Sbjct: 518 AGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKG 554
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 100/241 (41%), Gaps = 14/241 (5%)
Query: 30 LAYETFLITL-------IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82
L YE ++TL GK++ +A+ + M P F+ + L N ++
Sbjct: 149 LGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASE 208
Query: 83 TVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMI 142
V L D MV G PNL+ Y VV LC D+D F ++M + + Y+ +
Sbjct: 209 AVALVDRMVQRG--CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTV 266
Query: 143 FECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI 202
+ L K + + N F EM +P + ++ I+ L + + A + + ++E I
Sbjct: 267 IDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKI 326
Query: 203 LPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRSMRDRF 262
P + N L+ G+L + + +EM+ R I T L F M DR
Sbjct: 327 NPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF-----CMHDRL 381
Query: 263 D 263
D
Sbjct: 382 D 382
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 4/243 (1%)
Query: 10 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 69
EA MV+R P +++ Y + L + +D A L M+ + +S
Sbjct: 208 EAVALVDRMVQR-GCQP-NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYST 265
Query: 70 ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129
+D L K + L+ M G + PN+I Y++++ LCN + R M+
Sbjct: 266 VIDSLCKYRHEDDALNLFTEMENKG--VRPNVITYSSLISCLCNYERWSDASRLLSDMIE 323
Query: 130 HGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEF 189
P+ +T+N + + +K K+ E E + EMIK P ++ I D +
Sbjct: 324 RKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 383
Query: 190 AIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKK 249
A ++ ++ P + N L+ G R+ + EM R ++ VT L
Sbjct: 384 AKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIH 443
Query: 250 AFY 252
F+
Sbjct: 444 GFF 446
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 99/227 (43%), Gaps = 6/227 (2%)
Query: 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLW 87
+V+ Y + + L ++ +A + L M P + F+ +D VK +L+
Sbjct: 294 NVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLY 353
Query: 88 DIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 147
D M+ + P++ Y++++ C ++ +D F+ M+ FP+ +TYN +
Sbjct: 354 DEMIKRSID--PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFC 411
Query: 148 KNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEA 207
K K++ E F EM + + T I A + + A ++ ++ +G+ P
Sbjct: 412 KAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIM 471
Query: 208 SANVLLVGLRNLGRLSDVRRFAEEMLNRR----ILIYDVTMQKLKKA 250
+ N LL GL G+L E + + I Y++ ++ + KA
Sbjct: 472 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 518
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 103/256 (40%), Gaps = 4/256 (1%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ + +A +MVE + P+ + + T + L + EA+ + M C
Sbjct: 164 GYCHGKRISDAVALVDQMVE-MGYRPD-TITFTTLIHGLFLHNKASEAVALVDRMVQRGC 221
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P L + ++ L K D L + M + N+++Y+ V+ LC D+
Sbjct: 222 QPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAA--KIEANVVIYSTVIDSLCKYRHEDDA 279
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
F +M G P+ +TY+ + CL ++ + +MI+ + P + I
Sbjct: 280 LNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDA 339
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240
+ + A ++++ +++ I P + + L+ G RL + + E M+++
Sbjct: 340 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 399
Query: 241 DVTMQKLKKAFYNESR 256
VT L F R
Sbjct: 400 VVTYNTLINGFCKAKR 415
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/198 (18%), Positives = 82/198 (41%), Gaps = 8/198 (4%)
Query: 60 CFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNL----MPNLIMYNAVVGLLCNNN 115
C+ F S + D L + H+++L D + G + +P++ +N ++ +
Sbjct: 40 CYWGRAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMK 99
Query: 116 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCA 175
D V ++M G + TYN++ C + ++ +M+K ++P+ + +
Sbjct: 100 KFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLS 159
Query: 176 TAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235
+ + A+ + + ++E G P + L+ GL + S+ + M+ R
Sbjct: 160 SLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQR 219
Query: 236 ----RILIYDVTMQKLKK 249
++ Y V + L K
Sbjct: 220 GCQPNLVTYGVVVNGLCK 237
Score = 35.4 bits (80), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 11 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 70
A F +MV + +++ Y T L L + ++++A+ ++ PT+ ++
Sbjct: 454 AQMVFKQMVS--DGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 511
Query: 71 LDILVKLNDSTHTVQLWDIMVGIGF-NLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129
++ + K + WD+ + + P++I+YN ++ C + F +M
Sbjct: 512 IEGMCK---AGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMRE 568
Query: 130 HGAFPDSLT 138
G PDS T
Sbjct: 569 DGPLPDSGT 577
>sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040,
mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2
SV=1
Length = 517
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 93/202 (46%), Gaps = 7/202 (3%)
Query: 3 EKEGNVVEANKTFGEMVERFEWNPE---HVLAYETFLITLIRGKQVDEALKFLRVMKGEN 59
++ V +K + MV+ E P V++Y T + T R +A + M+ +
Sbjct: 298 KRHCRVSHPDKCYNFMVKEME--PRGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKG 355
Query: 60 CFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDN 119
+ +++ + ++ +S+ +L D M +G L P+ I Y ++ LC + +VD
Sbjct: 356 MVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELG--LSPDRIFYTTILDHLCKSGNVDK 413
Query: 120 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAIT 179
+ F+ M+ H PD+++YN + L ++ +V E F +M E P L I
Sbjct: 414 AYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIG 473
Query: 180 MLLDADEPEFAIEIWNYILENG 201
L+ + A ++W+ +++ G
Sbjct: 474 GLIRGKKLSAAYKVWDQMMDKG 495
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 5/229 (2%)
Query: 30 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF-FSNALDILVKLNDSTHTVQLWD 88
LAY + + L++ +D A++ M+ + + F ++ + +LV+ + ++
Sbjct: 10 LAYRSRIANLVKSGMIDNAVQVFDEMR-HSSYRVFSFDYNRFIGVLVRESRFELAEAIYW 68
Query: 89 IMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148
M +GF+L+P Y+ + LC D + M G PD +N+ + L +
Sbjct: 69 DMKPMGFSLIP--FTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCR 126
Query: 149 NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEAS 208
KV F M++ +P ++ I L A + A+EIWN ++ +G+ P +
Sbjct: 127 ENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKA 186
Query: 209 ANVLLVGLRNLGRLS-DVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256
L+VGL + ++ AEE+ + R+ + V L F R
Sbjct: 187 CAALVVGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGR 235
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
K GNV +A F +M+E E P+ + +Y + + L R +V EA+K MKG+ C P
Sbjct: 407 KSGNVDKAYGVFNDMIEH-EITPDAI-SYNSLISGLCRSGRVTEAIKLFEDMKGKECCPD 464
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNL 97
F + L++ + ++WD M+ GF L
Sbjct: 465 ELTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTL 498
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 89/205 (43%), Gaps = 2/205 (0%)
Query: 31 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIM 90
+Y L R D+ F+ F + +S ++ + +++ +L++ M
Sbjct: 292 SYNQLLKRHCRVSHPDKCYNFMVKEMEPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEM 351
Query: 91 VGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 150
G ++ N++ Y +++ + + DQM G PD + Y I + L K+
Sbjct: 352 RQKG--MVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSG 409
Query: 151 KVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASAN 210
V + F++MI++E P ++ + I+ L + AI+++ + P E +
Sbjct: 410 NVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFK 469
Query: 211 VLLVGLRNLGRLSDVRRFAEEMLNR 235
++ GL +LS + ++M+++
Sbjct: 470 FIIGGLIRGKKLSAAYKVWDQMMDK 494
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 104/264 (39%), Gaps = 23/264 (8%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
+E V A +TF MV+R P+ V++Y + L R +V +A++ M P
Sbjct: 126 RENKVGFAVQTFFCMVQRGR-EPD-VVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPD 183
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVG---IGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
K A LV V L MV + + ++YNA++ C ++
Sbjct: 184 NK----ACAALVVGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKA 239
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
M G PD +TYN++ N + E EM+++ Q + +
Sbjct: 240 EALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKR 299
Query: 181 LLDADEPEFAIEIWNYILE----NGILPLEASANVLLVGLRNLGRLSDVR---RFAEEML 233
P+ + +N++++ G + + + + + R S+ R R EEM
Sbjct: 300 HCRVSHPD---KCYNFMVKEMEPRGFCDVVSYSTL----IETFCRASNTRKAYRLFEEMR 352
Query: 234 NRRILIYDVTMQKLKKAFYNESRS 257
+ +++ VT L KAF E S
Sbjct: 353 QKGMVMNVVTYTSLIKAFLREGNS 376
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 106/242 (43%), Gaps = 4/242 (1%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
K G V+EA + F EMV R +P+ ++ Y + + L ++DEA + +M + C
Sbjct: 272 KNGKVLEAKELFEEMV-RMSIDPD-IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLAD 329
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ ++ ++ K ++L+ M G L+ N + YN ++ DVD F
Sbjct: 330 VVSYNTLINGFCKAKRVEDGMKLFREMSQRG--LVSNTVTYNTLIQGFFQAGDVDKAQEF 387
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
F QM F G PD TYN++ L N ++ + F +M K E + T I +
Sbjct: 388 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 447
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVT 243
+ E A ++ + G+ P + ++ GL G L +V +M ++ D T
Sbjct: 448 TGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCT 507
Query: 244 MQ 245
+
Sbjct: 508 LS 509
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 107/253 (42%), Gaps = 39/253 (15%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ + V +A +MVE + P+ ++AY + +L + K+V++A F + ++ +
Sbjct: 164 GFCRRNRVSDAVSLVDKMVE-IGYKPD-IVAYNAIIDSLCKTKRVNDAFDFFKEIERKG- 220
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
+ PN++ Y A+V LCN++ +
Sbjct: 221 ------------------------------------IRPNVVTYTALVNGLCNSSRWSDA 244
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
R M+ P+ +TY+ + + +KN KV E + F EM++ P + ++ I
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 304
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240
L D + A ++++ ++ G L S N L+ G R+ D + EM R ++
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 364
Query: 241 DVTMQKLKKAFYN 253
VT L + F+
Sbjct: 365 TVTYNTLIQGFFQ 377
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 3/223 (1%)
Query: 15 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 74
F + +ER P +V+ Y + L + +A + L M + P + +S LD
Sbjct: 212 FFKEIERKGIRP-NVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF 270
Query: 75 VKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP 134
VK +L++ MV + + P+++ Y++++ LC ++ +D + FD MV G
Sbjct: 271 VKNGKVLEAKELFEEMVRMSID--PDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLA 328
Query: 135 DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIW 194
D ++YN + K K+V + F EM + + T I A + + A E +
Sbjct: 329 DVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFF 388
Query: 195 NYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI 237
+ + GI P + N+LL GL + G L E+M R +
Sbjct: 389 SQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 431
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 12/224 (5%)
Query: 38 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIG--- 94
T +R ++++A+ M FP++ F+ L +VKL +D+++ +G
Sbjct: 59 TRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKK-------YDVVISLGKKM 111
Query: 95 --FNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKV 152
+ +L +N V+ C V +M+ G PD +T + + +V
Sbjct: 112 EVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRV 171
Query: 153 HEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVL 212
+ + +M++ ++P + I L A + + I GI P + L
Sbjct: 172 SDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTAL 231
Query: 213 LVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256
+ GL N R SD R +M+ ++I +T L AF +
Sbjct: 232 VNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 104/229 (45%), Gaps = 4/229 (1%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
KEG +VEA K + EMV+R +P ++ Y + + ++DEA + M ++CFP
Sbjct: 338 KEGKLVEAEKLYDEMVKR-SIDPS-IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 395
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ ++ + K ++++ M G L+ N + YN ++ L D D
Sbjct: 396 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRG--LVGNTVTYNILIQGLFQAGDCDMAQEI 453
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
F +MV G P+ +TYN + + L KN K+ + F + +++ +PT I +
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 513
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEM 232
A + E +++ + G+ P + N ++ G G + +EM
Sbjct: 514 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 562
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 103/248 (41%), Gaps = 14/248 (5%)
Query: 30 LAYETFLITL-------IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82
L YE ++TL K++ EA+ + M P F+ + L N ++
Sbjct: 145 LGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASE 204
Query: 83 TVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMI 142
+ L D MV G P+L+ Y VV LC D D F ++M P L YN I
Sbjct: 205 AMALIDRMVAKG--CQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTI 262
Query: 143 FECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI 202
+ L K K + + N F EM +P + ++ I+ L + A + + ++E I
Sbjct: 263 IDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI 322
Query: 203 LPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRSMRDRF 262
P + + L+ G+L + + +EM+ R I VT L F M DR
Sbjct: 323 NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGF-----CMHDRL 377
Query: 263 DSLERRWK 270
D ++ ++
Sbjct: 378 DEAKQMFE 385
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 92/231 (39%), Gaps = 2/231 (0%)
Query: 26 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQ 85
P + Y + R Q+ AL L M P + S+ L+ + V
Sbjct: 113 PHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVA 172
Query: 86 LWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 145
L D M G+ PN + +N ++ L +N D+MV G PD +TY ++
Sbjct: 173 LVDQMFVTGYQ--PNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNG 230
Query: 146 LIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPL 205
L K N ++M + + +P L T I L + A+ ++ + GI P
Sbjct: 231 LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 290
Query: 206 EASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256
+ + L+ L N GR SD R +M+ R+I T L AF E +
Sbjct: 291 VVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 96/226 (42%), Gaps = 6/226 (2%)
Query: 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWD 88
++ Y + L + D A L M+ P + ++ +D L K + L+
Sbjct: 221 LVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFK 280
Query: 89 IMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148
M G + PN++ Y++++ LCN + R M+ PD T++ + + +K
Sbjct: 281 EMETKG--IRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338
Query: 149 NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEAS 208
K+ E E + EM+K P+ + ++ I D + A +++ +++ P +
Sbjct: 339 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVT 398
Query: 209 ANVLLVGLRNLGRLSDVRRFAEEMLNRRI----LIYDVTMQKLKKA 250
N L+ G R+ + EM R + + Y++ +Q L +A
Sbjct: 399 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQA 444
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 97/233 (41%), Gaps = 3/233 (1%)
Query: 24 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83
+ P V + T + L + EA+ + M + C P L + ++ L K D+
Sbjct: 182 YQPNTV-TFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIF 143
L + M L P +++YN ++ LC +D+ F +M G P+ +TY+ +
Sbjct: 241 FNLLNKMEQ--GKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 298
Query: 144 ECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGIL 203
CL + + +MI+ + P + I + + A ++++ +++ I
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 358
Query: 204 PLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256
P + + L+ G RL + ++ E M+++ VT L K F R
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKR 411
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/215 (19%), Positives = 100/215 (46%), Gaps = 4/215 (1%)
Query: 10 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 69
+A++ +M+ER + NP+ V + + ++ ++ EA K M + P++ +S+
Sbjct: 309 DASRLLSDMIER-KINPD-VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSS 366
Query: 70 ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129
++ + Q+++ MV + P+++ YN ++ C V+ F +M
Sbjct: 367 LINGFCMHDRLDEAKQMFEFMVSK--HCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQ 424
Query: 130 HGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEF 189
G +++TYN++ + L + + F EM+ + P + T + L + E
Sbjct: 425 RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEK 484
Query: 190 AIEIWNYILENGILPLEASANVLLVGLRNLGRLSD 224
A+ ++ Y+ + + P + N+++ G+ G++ D
Sbjct: 485 AMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVED 519
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/225 (19%), Positives = 94/225 (41%), Gaps = 6/225 (2%)
Query: 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWD 88
VL Y T + L + K +D+AL + M+ + P + +S+ + L + +L
Sbjct: 256 VLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLS 315
Query: 89 IMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148
M+ N P++ ++A++ + + +D+MV P +TY+ +
Sbjct: 316 DMIERKIN--PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373
Query: 149 NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEAS 208
+ ++ E + F M+ P + T I E +E++ + + G++ +
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 433
Query: 209 ANVLLVGLRNLGRLSDVRRFAEEMLNR----RILIYDVTMQKLKK 249
N+L+ GL G + +EM++ I+ Y+ + L K
Sbjct: 434 YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCK 478
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 87/222 (39%), Gaps = 5/222 (2%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ K V E + F EM +R + + Y + L + D A + + M +
Sbjct: 405 GFCKYKRVEEGMEVFREMSQRGLVG--NTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P + ++ LD L K + +++ + + P + YN ++ +C V++
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS--KMEPTIYTYNIMIEGMCKAGKVEDG 520
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+ F + G PD + YN + + E + F EM ++ P T I
Sbjct: 521 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA 580
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRL 222
L + E + E+ + G +AS L+ + + GRL
Sbjct: 581 RLRDGDREASAELIKEMRSCGFAG-DASTIGLVTNMLHDGRL 621
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/155 (17%), Positives = 65/155 (41%), Gaps = 4/155 (2%)
Query: 99 PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENF 158
P++I ++ ++ + N D V +QM G + TY+++ C + ++
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 159 FHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRN 218
+M+K ++P + ++ + + A+ + + + G P + N L+ GL
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 219 LGRLSDVRRFAEEMLNRR----ILIYDVTMQKLKK 249
+ S+ + M+ + ++ Y V + L K
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCK 233
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/255 (19%), Positives = 115/255 (45%), Gaps = 9/255 (3%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
GW + G + EA K F EM + +V Y + L R Q+ A M C
Sbjct: 264 GWCRAGEISEAEKVFKEM--KLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGC 321
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P F+N + + VK + +Q+++ M +G P+ I YN ++ C + +++N
Sbjct: 322 APNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCE--PDTITYNFLIEAHCRDENLENA 379
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+ + M+ ++ T+N IF + K + V+ + +M++ + +P + + M
Sbjct: 380 VKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRM 439
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRIL-- 238
+ + + +++ + + + P + +L+ +G ++ + +EM+ + L
Sbjct: 440 FVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTP 499
Query: 239 ---IYDVTMQKLKKA 250
+Y++ + +L++A
Sbjct: 500 SLSLYEMVLAQLRRA 514
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/187 (19%), Positives = 80/187 (42%), Gaps = 6/187 (3%)
Query: 30 LAYETFLITL---IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQL 86
++ ETF I + +R EA+ M+ C P FS + L + ++
Sbjct: 184 ISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSF 243
Query: 87 WDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 146
+D + P++I+Y +V C ++ + F +M G P+ TY+++ + L
Sbjct: 244 FD---SLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDAL 300
Query: 147 IKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLE 206
+ ++ + F +M+ + P + + + + A E ++++N + + G P
Sbjct: 301 CRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDT 360
Query: 207 ASANVLL 213
+ N L+
Sbjct: 361 ITYNFLI 367
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 73/168 (43%), Gaps = 5/168 (2%)
Query: 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 61
+ + G EA F M E + P+ + A+ + L R ++ EA F +K +
Sbjct: 196 YVRAGLASEAVHCFNRM-EDYGCVPDKI-AFSIVISNLSRKRRASEAQSFFDSLK-DRFE 252
Query: 62 PTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVF 121
P + ++N + + + + +++ M G PN+ Y+ V+ LC +
Sbjct: 253 PDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIE--PNVYTYSIVIDALCRCGQISRAH 310
Query: 122 RFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQP 169
F M+ G P+++T+N + +K + +V +++M K +P
Sbjct: 311 DVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEP 358
>sp|Q9SJN2|PP187_ARATH Pentatricopeptide repeat-containing protein At2g36240
OS=Arabidopsis thaliana GN=At2g36240 PE=2 SV=1
Length = 497
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 98/207 (47%), Gaps = 2/207 (0%)
Query: 67 FSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQ 126
F +A+D + + + +D M + + PN+ +YN VV + D+D RF+ +
Sbjct: 160 FRSAIDAYCRARKMDYALLAFDTMKRL-IDGKPNVGVYNTVVNGYVKSGDMDKALRFYQR 218
Query: 127 MVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADE 186
M A PD T+N++ ++ K + F EM + +P ++ T I L + +
Sbjct: 219 MGKERAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGK 278
Query: 187 PEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQK 246
E +++ ++E G EA+ +L+ GL GR+ D ++LN+R+L +
Sbjct: 279 IEEGVKMAYEMIELGCRFSEATCEILVDGLCREGRVDDACGLVLDLLNKRVLPSEFDYGS 338
Query: 247 LKKAFYNESRSMRDRFDSLERRWKTSQ 273
L + E++++R + +E WK Q
Sbjct: 339 LVEKLCGENKAVR-AMEMMEELWKKGQ 364
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 101/244 (41%), Gaps = 3/244 (1%)
Query: 14 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 73
F M + P +V Y T + ++ +D+AL+F + M E P + F+ ++
Sbjct: 179 AFDTMKRLIDGKP-NVGVYNTVVNGYVKSGDMDKALRFYQRMGKERAKPDVCTFNILING 237
Query: 74 LVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAF 133
+ + + L+ M G PN++ +N ++ ++ ++ + +M+ G
Sbjct: 238 YCRSSKFDLALDLFREMKEKGCE--PNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCR 295
Query: 134 PDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEI 193
T ++ + L + +V + +++ P+ + + + L ++ A+E+
Sbjct: 296 FSEATCEILVDGLCREGRVDDACGLVLDLLNKRVLPSEFDYGSLVEKLCGENKAVRAMEM 355
Query: 194 WNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYN 253
+ + G P + L+ GLR GR F E+M+N IL VT L + +
Sbjct: 356 MEELWKKGQTPCFIACTTLVEGLRKSGRTEKASGFMEKMMNAGILPDSVTFNLLLRDLCS 415
Query: 254 ESRS 257
S
Sbjct: 416 SDHS 419
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 91/256 (35%), Gaps = 4/256 (1%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ K G++ +A + + M + E V + + R + D AL R MK + C
Sbjct: 202 GYVKSGDMDKALRFYQRMGK--ERAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKGC 259
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P + F+ + + V++ M+ +G + +V LC VD+
Sbjct: 260 EPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRF--SEATCEILVDGLCREGRVDDA 317
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
++ P Y + E L K E+ K P + C T +
Sbjct: 318 CGLVLDLLNKRVLPSEFDYGSLVEKLCGENKAVRAMEMMEELWKKGQTPCFIACTTLVEG 377
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240
L + E A ++ GILP + N+LL L + +D R ++
Sbjct: 378 LRKSGRTEKASGFMEKMMNAGILPDSVTFNLLLRDLCSSDHSTDANRLRLLASSKGYEPD 437
Query: 241 DVTMQKLKKAFYNESR 256
+ T L F E R
Sbjct: 438 ETTYHVLVSGFTKEGR 453
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 101/220 (45%), Gaps = 4/220 (1%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
+ KEG ++EA K F EM++R +P +++ Y + + ++DEA + +M ++C
Sbjct: 319 AFAKEGKLIEAEKLFDEMIQR-SIDP-NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDC 376
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P + ++ ++ K ++L+ M G L+ N + Y ++ +D DN
Sbjct: 377 LPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRG--LVGNTVTYTTLIHGFFQASDCDNA 434
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
F QMV G P+ +TYN + + L KN K+ + F + K++ +P
Sbjct: 435 QMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEG 494
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLG 220
+ A + E +++ + G+ P + N ++ G G
Sbjct: 495 MCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKG 534
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 3/243 (1%)
Query: 14 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 73
+FGE +E + ++ Y + L R Q+ AL L M P++ ++ L+
Sbjct: 86 SFGEKMEILGVS-HNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNG 144
Query: 74 LVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAF 133
N + V L D MV +G+ P+ + + +V L +N ++MV G
Sbjct: 145 FCHGNRISEAVALVDQMVEMGYQ--PDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQ 202
Query: 134 PDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEI 193
PD +TY + L K + N ++M K + + + +T I L + A+ +
Sbjct: 203 PDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNL 262
Query: 194 WNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYN 253
+ + GI P + + L+ L N GR SD R +ML R+I VT L AF
Sbjct: 263 FTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAK 322
Query: 254 ESR 256
E +
Sbjct: 323 EGK 325
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 105/253 (41%), Gaps = 9/253 (3%)
Query: 15 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 74
G+M+ + + P ++ + L G ++ EA+ + M P F+ + L
Sbjct: 123 LGKMM-KLGYGPS-IVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGL 180
Query: 75 VKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP 134
+ N ++ V L + MV G P+L+ Y AV+ LC + D ++M
Sbjct: 181 FQHNKASEAVALVERMVVKG--CQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEA 238
Query: 135 DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIW 194
D + Y+ + + L K + V + N F EM +P ++ I+ L + A +
Sbjct: 239 DVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLL 298
Query: 195 NYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNE 254
+ +LE I P + N L+ G+L + + +EM+ R I VT L F
Sbjct: 299 SDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGF--- 355
Query: 255 SRSMRDRFDSLER 267
M DR D ++
Sbjct: 356 --CMHDRLDEAQQ 366
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 2/194 (1%)
Query: 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWD 88
V Y + + L + +A + L M P + F++ +D K +L+D
Sbjct: 275 VFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 334
Query: 89 IMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148
M+ + PN++ YN+++ C ++ +D + F MV PD +TYN + K
Sbjct: 335 EMIQRSID--PNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCK 392
Query: 149 NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEAS 208
KKV + F +M + + T I A + + A ++ ++ +G+ P +
Sbjct: 393 AKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMT 452
Query: 209 ANVLLVGLRNLGRL 222
N LL GL G+L
Sbjct: 453 YNTLLDGLCKNGKL 466
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 2/227 (0%)
Query: 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWD 88
++ Y + L + + D AL L M+ + +S +D L K + L+
Sbjct: 205 LVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFT 264
Query: 89 IMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148
M G + P++ Y++++ LCN + R M+ P+ +T+N + + K
Sbjct: 265 EMDNKG--IRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAK 322
Query: 149 NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEAS 208
K+ E E F EMI+ P + + I D + A +I+ ++ LP +
Sbjct: 323 EGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVT 382
Query: 209 ANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNES 255
N L+ G ++ D +M R ++ VT L F+ S
Sbjct: 383 YNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQAS 429
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 68/166 (40%), Gaps = 12/166 (7%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL---KFLRVMKG 57
G+ + + A F +MV + +++ Y T L L + ++++A+ ++L+ K
Sbjct: 424 GFFQASDCDNAQMVFKQMVS--DGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKM 481
Query: 58 ENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGF-NLMPNLIMYNAVVGLLCNNND 116
E T S + K+ D WD+ + + P++I YN ++ C
Sbjct: 482 EPDIYTYNIMSEGMCKAGKVEDG------WDLFCSLSLKGVKPDVIAYNTMISGFCKKGL 535
Query: 117 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEM 162
+ + F +M G PDS TYN + +++ EM
Sbjct: 536 KEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEM 581
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/135 (17%), Positives = 58/135 (42%)
Query: 99 PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENF 158
P+++ ++ ++ + D V F ++M G + TYN++ CL + ++
Sbjct: 63 PSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAI 122
Query: 159 FHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRN 218
+M+K + P+ + + + + A+ + + ++E G P + L+ GL
Sbjct: 123 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 182
Query: 219 LGRLSDVRRFAEEML 233
+ S+ E M+
Sbjct: 183 HNKASEAVALVERMV 197
>sp|Q9SAJ5|PP133_ARATH Pentatricopeptide repeat-containing protein At1g79540
OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1
Length = 780
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 116/266 (43%), Gaps = 12/266 (4%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV--MKGE 58
+ K G +A ++FG M E F+ P+ V Y L ++R ++V L F M
Sbjct: 136 AYAKMGMAEKAVESFGRMKE-FDCRPD-VFTYNVILRVMMR-EEVFFMLAFAVYNEMLKC 192
Query: 59 NCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVD 118
NC P L F +D L K ++ +++D M G G + PN + Y ++ LC D
Sbjct: 193 NCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGIS--PNRVTYTILISGLCQRGSAD 250
Query: 119 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAI 178
+ + F +M G +PDS+ +N + + K ++ E K+ + ++ I
Sbjct: 251 DARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLI 310
Query: 179 TMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI- 237
L A A E++ +L+ I P +L+ GL G++ D + M ++ I
Sbjct: 311 DGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGIS 370
Query: 238 ---LIYDVTMQKL-KKAFYNESRSMR 259
Y+ ++ L + E RS++
Sbjct: 371 PDTYCYNAVIKALCGRGLLEEGRSLQ 396
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 100/232 (43%), Gaps = 4/232 (1%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G + G+ +A K F EM + P+ V A+ L + ++ EA + LR+ + +
Sbjct: 242 GLCQRGSADDARKLFYEMQTSGNY-PDSV-AHNALLDGFCKLGRMVEAFELLRLFEKDGF 299
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
L+ +S+ +D L + T +L+ M + N+ P++I+Y ++ L +++
Sbjct: 300 VLGLRGYSSLIDGLFRARRYTQAFELYANM--LKKNIKPDIILYTILIQGLSKAGKIEDA 357
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+ M G PD+ YN + + L + E + EM + E P I
Sbjct: 358 LKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICS 417
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEM 232
+ A EI+ I ++G P A+ N L+ GL G L + R +M
Sbjct: 418 MCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKM 469
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 10/172 (5%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA---LKFLRVMKGENC 60
+ G V EA + F E +E+ +P V + + L + ++ EA L + V + +
Sbjct: 420 RNGLVREAEEIFTE-IEKSGCSPS-VATFNALIDGLCKSGELKEARLLLHKMEVGRPASL 477
Query: 61 FPTLKFFSN-ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDN 119
F L N + D +V+ + G + P+++ YN ++ C D+D
Sbjct: 478 FLRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSS--PDIVSYNVLINGFCRAGDIDG 535
Query: 120 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTP 171
+ + + G PDS+TYN + L + + E F+ K++++ +P
Sbjct: 536 ALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLFYA--KDDFRHSP 585
>sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490,
mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2
SV=1
Length = 836
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 3/194 (1%)
Query: 32 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMV 91
YE + +L + ++D A K + MK P+ FS+ +D + K +++++ M
Sbjct: 316 YELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQ 375
Query: 92 GIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKK 151
G G P+ M+ +++ +D R +D+M G P+ Y MI E K+ K
Sbjct: 376 GFGHR--PSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGK 433
Query: 152 VHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANV 211
+ F +M K + PTP + + M + + + A++I+N + G+ P +S
Sbjct: 434 LEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYIS 493
Query: 212 LLVGLRNLGRLSDV 225
LL L N RL DV
Sbjct: 494 LLTLLAN-KRLVDV 506
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 109/226 (48%), Gaps = 6/226 (2%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ G + K +M++R + +P +V+ + + + ++ ++ EA + L+ M
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKR-KISP-NVVTFSVLIDSFVKEGKLREADQLLKEMMQRGI 364
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P +++ +D K N +Q+ D+M+ G + P+++ +N ++ C N +D+
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCD--PDIMTFNILINGYCKANRIDDG 422
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
F +M G +++TYN + + ++ K+ + F EM+ +P ++ +
Sbjct: 423 LELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDG 482
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLV-GLRNLGRLSDV 225
L D E E A+EI+ I E + L+ ++++ G+ N ++ D
Sbjct: 483 LCDNGELEKALEIFGKI-EKSKMELDIGIYMIIIHGMCNASKVDDA 527
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 4/251 (1%)
Query: 6 GNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 65
G V +A MVE + P V Y L + + Q A++ LR M+ N
Sbjct: 207 GKVSDAVVLIDRMVET-GFQPNEV-TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAV 264
Query: 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFD 125
+S +D L K + L++ M GF ++I YN ++G CN D+ +
Sbjct: 265 KYSIIIDGLCKDGSLDNAFNLFNEMEIKGFK--ADIITYNTLIGGFCNAGRWDDGAKLLR 322
Query: 126 QMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDAD 185
M+ P+ +T++++ + +K K+ E + EM++ P + + I +
Sbjct: 323 DMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKEN 382
Query: 186 EPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQ 245
E AI++ + ++ G P + N+L+ G R+ D EM R ++ VT
Sbjct: 383 RLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYN 442
Query: 246 KLKKAFYNESR 256
L + F +
Sbjct: 443 TLVQGFCQSGK 453
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 106/246 (43%), Gaps = 4/246 (1%)
Query: 11 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 70
A T G+++ + + P+ V+ + T L L +V EAL+ + M PTL +
Sbjct: 142 AFSTMGKIM-KLGYEPDTVI-FNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTL 199
Query: 71 LDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130
++ L + V L D MV GF PN + Y V+ ++C + +M
Sbjct: 200 VNGLCLNGKVSDAVVLIDRMVETGFQ--PNEVTYGPVLNVMCKSGQTALAMELLRKMEER 257
Query: 131 GAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFA 190
D++ Y++I + L K+ + N F+EM ++ + T I +A +
Sbjct: 258 NIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDG 317
Query: 191 IEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKA 250
++ +++ I P + +VL+ G+L + + +EM+ R I +T L
Sbjct: 318 AKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDG 377
Query: 251 FYNESR 256
F E+R
Sbjct: 378 FCKENR 383
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/222 (18%), Positives = 90/222 (40%), Gaps = 5/222 (2%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ K + + + F EM R + + Y T + + +++ A K + M
Sbjct: 412 GYCKANRIDDGLELFREMSLR--GVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRV 469
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P + + LD L + ++++ + L ++ +Y ++ +CN + VD+
Sbjct: 470 RPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMEL--DIGIYMIIIHGMCNASKVDDA 527
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+ F + G D+ YN++ L + + + + F +M + P L I
Sbjct: 528 WDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRA 587
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRL 222
L D+ A E+ + +G P + S +++ + + G L
Sbjct: 588 HLGDDDATTAAELIEEMKSSG-FPADVSTVKMVINMLSSGEL 628
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 75/194 (38%), Gaps = 6/194 (3%)
Query: 22 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81
F + L+Y L + + G + D+A+ R M PT+ F+ + K
Sbjct: 46 FSTFSDRNLSYRDKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYE 105
Query: 82 HTVQLWDIM--VGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTY 139
+ L M GI ++ IM N C + F +++ G PD++ +
Sbjct: 106 LVLALCKQMESKGIAHSIYTLSIMINC----FCRCRKLSYAFSTMGKIMKLGYEPDTVIF 161
Query: 140 NMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILE 199
N + L +V E M++ +PT + T + L + A+ + + ++E
Sbjct: 162 NTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVE 221
Query: 200 NGILPLEASANVLL 213
G P E + +L
Sbjct: 222 TGFQPNEVTYGPVL 235
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 106/233 (45%), Gaps = 4/233 (1%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G K G+V A + M++ ++P+ V Y + + L + +V EA++ L M +C
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQE-GYDPD-VYTYNSVISGLCKLGEVKEAVEVLDQMITRDC 361
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P ++ + L K N +L ++ G ++P++ +N+++ LC +
Sbjct: 362 SPNTVTYNTLISTLCKENQVEEATELARVLTSKG--ILPDVCTFNSLIQGLCLTRNHRVA 419
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
F++M G PD TYNM+ + L K+ E N +M + + + T I
Sbjct: 420 MELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDG 479
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEML 233
A++ A EI++ + +G+ + N L+ GL R+ D + ++M+
Sbjct: 480 FCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMI 532
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 105/255 (41%), Gaps = 35/255 (13%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G K G V EA + +M+ R + +P V Y T + TL + QV+EA + RV+ +
Sbjct: 339 GLCKLGEVKEAVEVLDQMITR-DCSPNTV-TYNTLISTLCKENQVEEATELARVLTSKGI 396
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIG-------FNLM--------------- 98
P + F++ + L + ++L++ M G +N++
Sbjct: 397 LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456
Query: 99 -----------PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 147
++I YN ++ C N FD+M HG +S+TYN + + L
Sbjct: 457 MLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLC 516
Query: 148 KNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEA 207
K+++V + +MI +P + +T + + A +I + NG P
Sbjct: 517 KSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIV 576
Query: 208 SANVLLVGLRNLGRL 222
+ L+ GL GR+
Sbjct: 577 TYGTLISGLCKAGRV 591
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 2/205 (0%)
Query: 31 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIM 90
Y + +L ++DEAL L+ M+ C ++ ++ +D K N + +++D M
Sbjct: 437 TYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEM 496
Query: 91 VGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 150
G + N + YN ++ LC + V++ + DQM+ G PD TYN + +
Sbjct: 497 EVHGVSR--NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGG 554
Query: 151 KVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASAN 210
+ + + M N +P + T I+ L A E A ++ I GI + N
Sbjct: 555 DIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYN 614
Query: 211 VLLVGLRNLGRLSDVRRFAEEMLNR 235
++ GL + ++ EML +
Sbjct: 615 PVIQGLFRKRKTTEAINLFREMLEQ 639
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%)
Query: 99 PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENF 158
P+ +N +V LC V + D M+ G PD TYN + L K +V E
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEV 352
Query: 159 FHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGL 216
+MI + P + T I+ L ++ E A E+ + GILP + N L+ GL
Sbjct: 353 LDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 6/221 (2%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ K EA + F EM + + Y T + L + ++V++A + + M E
Sbjct: 479 GFCKANKTREAEEIFDEM--EVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQ 536
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P +++ L + D + M G P+++ Y ++ LC V+
Sbjct: 537 KPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCE--PDIVTYGTLISGLCKAGRVEVA 594
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMI-KNEWQPTPLNCATAIT 179
+ + G YN + + L + +K E N F EM+ +NE P ++
Sbjct: 595 SKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFR 654
Query: 180 MLLDADEP-EFAIEIWNYILENGILPLEASANVLLVGLRNL 219
L + P A++ +LE G +P +S +L GL L
Sbjct: 655 GLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTL 695
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 2/212 (0%)
Query: 24 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83
++PE L YE L+ L R D+ K L MK C F ++ +
Sbjct: 79 FSPEPAL-YEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEI 137
Query: 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIF 143
+ + D M+ F L P+ YN ++ LL + N + V +M G PD T+N++
Sbjct: 138 LSVVDWMID-EFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLI 196
Query: 144 ECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGIL 203
+ L + ++ +M P T + ++ + + A+ I ++E G
Sbjct: 197 KALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCS 256
Query: 204 PLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235
S NV++ G GR+ D F +EM N+
Sbjct: 257 WSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQ 288
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 83/211 (39%), Gaps = 3/211 (1%)
Query: 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWD 88
V + + L R Q+ A+ L M P K F+ + ++ D +++ +
Sbjct: 189 VSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIRE 248
Query: 89 IMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH-GAFPDSLTYNMIFECLI 147
MV G + + + N +V C V++ F +M G FPD T+N + L
Sbjct: 249 QMVEFGCSW--SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC 306
Query: 148 KNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEA 207
K V M++ + P + I+ L E + A+E+ + ++ P
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTV 366
Query: 208 SANVLLVGLRNLGRLSDVRRFAEEMLNRRIL 238
+ N L+ L ++ + A + ++ IL
Sbjct: 367 TYNTLISTLCKENQVEEATELARVLTSKGIL 397
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 8/231 (3%)
Query: 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 64
+ NV +A +M+ER + P+ V+ Y + + R D A + L +M P
Sbjct: 440 KSNVHKAMGVLNKMLER-KVLPD-VVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQ 497
Query: 65 KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFF 124
+++ +D L K L+D + G N PN++MY A++ C VD
Sbjct: 498 WTYTSMIDSLCKSKRVEEACDLFDSLEQKGVN--PNVVMYTALIDGYCKAGKVDEAHLML 555
Query: 125 DQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDA 184
++M+ P+SLT+N + L + K+ E +M+K QPT I LL
Sbjct: 556 EKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKD 615
Query: 185 DEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235
+ + A + +L +G P + + GRL D AE+M+ +
Sbjct: 616 GDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLD----AEDMMAK 662
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 104/248 (41%), Gaps = 4/248 (1%)
Query: 20 ERFEWNPEHVLA-YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 78
ERFE + ++ Y T L +L R VDE + M + P + ++ ++ KL
Sbjct: 173 ERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLG 232
Query: 79 DSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLT 138
+ Q +V G + P+ Y +++ C D+D+ F+ F++M G + +
Sbjct: 233 NVEEANQYVSKIVEAGLD--PDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVA 290
Query: 139 YNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYIL 198
Y + L +++ E + F +M +E PT I L ++ A+ + +
Sbjct: 291 YTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEME 350
Query: 199 ENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRSM 258
E GI P + VL+ L + + R +ML + ++ +T L Y + +
Sbjct: 351 ETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALING-YCKRGMI 409
Query: 259 RDRFDSLE 266
D D +E
Sbjct: 410 EDAVDVVE 417
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 113/303 (37%), Gaps = 38/303 (12%)
Query: 1 GWEKEGNVVEANKTFGEMVER----------------------------FEWNP-----E 27
G+ K GNV EAN+ ++VE F P
Sbjct: 227 GYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRR 286
Query: 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLW 87
+ +AY + L +++DEA+ MK + CFPT++ ++ + L + + L
Sbjct: 287 NEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLV 346
Query: 88 DIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 147
M G PN+ Y ++ LC+ + QM+ G P+ +TYN +
Sbjct: 347 KEMEETGIK--PNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYC 404
Query: 148 KNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEA 207
K + + + M + P I ++ + A+ + N +LE +LP
Sbjct: 405 KRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHK-AMGVLNKMLERKVLPDVV 463
Query: 208 SANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR--SMRDRFDSL 265
+ N L+ G G R M +R ++ T + + R D FDSL
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL 523
Query: 266 ERR 268
E++
Sbjct: 524 EQK 526
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 4/201 (1%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
K V EA F + +E+ NP +V+ Y + + +VDEA L M +NC P
Sbjct: 509 KSKRVEEACDLF-DSLEQKGVNP-NVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPN 566
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
F+ + L L + MV IG L P + ++ L + D D+ +
Sbjct: 567 SLTFNALIHGLCADGKLKEATLLEEKMVKIG--LQPTVSTDTILIHRLLKDGDFDHAYSR 624
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
F QM+ G PD+ TY + + ++ + E+ +M +N P ++ I D
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGD 684
Query: 184 ADEPEFAIEIWNYILENGILP 204
+ FA ++ + + G P
Sbjct: 685 LGQTNFAFDVLKRMRDTGCEP 705
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 97/224 (43%), Gaps = 5/224 (2%)
Query: 10 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 69
+A + G+M+E+ +V+ Y + + +++A+ + +M+ P + ++
Sbjct: 376 KARELLGQMLEKGLM--PNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNE 433
Query: 70 ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129
+ K N L ++ ++P+++ YN+++ C + + D+ +R M
Sbjct: 434 LIKGYCKSNVHKAMGVLNKML---ERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMND 490
Query: 130 HGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEF 189
G PD TY + + L K+K+V E + F + + P + I A + +
Sbjct: 491 RGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDE 550
Query: 190 AIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEML 233
A + +L LP + N L+ GL G+L + E+M+
Sbjct: 551 AHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMV 594
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 3/182 (1%)
Query: 47 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNA 106
E++K + MK P++ F++ L IL+K + L+D M + + P+ +N
Sbjct: 156 ESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRT-YGVTPDSYTFNT 214
Query: 107 VVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK-- 164
++ C N+ VD FR F M + PD +TYN I + L + KV N M+K
Sbjct: 215 LINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKA 274
Query: 165 NEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSD 224
+ P ++ T + E + A+ +++ +L G+ P + N L+ GL R +
Sbjct: 275 TDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDE 334
Query: 225 VR 226
++
Sbjct: 335 IK 336
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 103/252 (40%), Gaps = 7/252 (2%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
K G A+ F EM + P+ + T + + VDEA + + M+ +C P
Sbjct: 185 KRGRTGMAHDLFDEMRRTYGVTPDSY-TFNTLINGFCKNSMVDEAFRIFKDMELYHCNPD 243
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ ++ +D L + + M+ ++ PN++ Y +V C ++D
Sbjct: 244 VVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLV 303
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNE----WQPTPLNCATAIT 179
F M+ G P+++TYN + + L + + E+++ + N+ + P I
Sbjct: 304 FHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDIL--IGGNDAFTTFAPDACTFNILIK 361
Query: 180 MLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILI 239
DA + A++++ +L + P AS +VL+ L E+ + +L+
Sbjct: 362 AHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLL 421
Query: 240 YDVTMQKLKKAF 251
+ L A+
Sbjct: 422 GKDECKPLAAAY 433
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 114/271 (42%), Gaps = 23/271 (8%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ + + EA F +M+ R P V Y T + L + DE L + G +
Sbjct: 290 GYCMKQEIDEAVLVFHDMLSR-GLKPNAV-TYNTLIKGLSEAHRYDEIKDIL--IGGNDA 345
Query: 61 FPTLKFFSNALDILVKLN-DSTH---TVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNND 116
F T + +IL+K + D+ H ++++ M+ + L P+ Y+ ++ LC N+
Sbjct: 346 FTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNM--KLHPDSASYSVLIRTLCMRNE 403
Query: 117 VDNVFRFFDQM----VFHG---AFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQP 169
D F+++ V G P + YN +FE L N K + E F +++K Q
Sbjct: 404 FDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQD 463
Query: 170 TPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFA 229
P + T IT + + A E+ +L +P + +L+ GL +G
Sbjct: 464 PP-SYKTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTL 522
Query: 230 EEMLNRRIL-----IYDVTMQKLKKAFYNES 255
+ ML L + V + K+ F NES
Sbjct: 523 QRMLRSSYLPVATTFHSVLAELAKRKFANES 553
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 107/244 (43%), Gaps = 8/244 (3%)
Query: 15 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 74
G+M+ + P ++ + + L RG +V +AL M G P + ++ +D L
Sbjct: 139 LGKMI-KLGHEPS-IVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGL 196
Query: 75 VKLNDSTHTVQLWDIMV--GIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGA 132
K + + L + M GIG P+++ YN+++ LC++ + R M
Sbjct: 197 CKSKQVDNALDLLNRMEKDGIG----PDVVTYNSLISGLCSSGRWSDATRMVSCMTKREI 252
Query: 133 FPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIE 192
+PD T+N + + +K +V E E F+ EMI+ P + + I L + A E
Sbjct: 253 YPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEE 312
Query: 193 IWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFY 252
++ +++ G P + ++L+ G ++ + EM R ++ VT L + +
Sbjct: 313 MFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYC 372
Query: 253 NESR 256
+
Sbjct: 373 RAGK 376
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 105/232 (45%), Gaps = 8/232 (3%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
KEG V EA + + EM+ R +P+ ++ Y + L ++DEA + M + CFP
Sbjct: 268 KEGRVSEAEEFYEEMIRR-SLDPD-IVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPD 325
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ +S ++ K H ++L+ M G ++ N + Y ++ C ++
Sbjct: 326 VVTYSILINGYCKSKKVEHGMKLFCEMSQRG--VVRNTVTYTILIQGYCRAGKLNVAEEI 383
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
F +MVF G P+ +TYN++ L N K+ + +M KN + I +
Sbjct: 384 FRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCK 443
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235
A E A +I+ + G++P + +++GL G +RR A+ + +
Sbjct: 444 AGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKG----LRREADALFRK 491
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 101/255 (39%), Gaps = 42/255 (16%)
Query: 32 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIM- 90
Y L IR ++D++L M P++ FS L + K+ + LW+ M
Sbjct: 49 YREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQ 108
Query: 91 -VGIGFNLM-------------------------------PNLIMYNAVVGLLCNNNDVD 118
+GI NL P+++ + +++ C + V
Sbjct: 109 MLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVY 168
Query: 119 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAI 178
+ FDQMV G P+ + YN I + L K+K+V + + M K+ P + + I
Sbjct: 169 DALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLI 228
Query: 179 TMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR--- 235
+ L + A + + + + I P + N L+ GR+S+ F EEM+ R
Sbjct: 229 SGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLD 288
Query: 236 ------RILIYDVTM 244
+LIY + M
Sbjct: 289 PDIVTYSLLIYGLCM 303
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 104/237 (43%), Gaps = 8/237 (3%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ + V +A F +MV + P +V+ Y T + L + KQVD AL L M+ +
Sbjct: 160 GFCRGDRVYDALYMFDQMVG-MGYKP-NVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGI 217
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P + +++ + L + ++ M + P++ +NA++ V
Sbjct: 218 GPDVVTYNSLISGLCSSGRWSDATRMVSCMTK--REIYPDVFTFNALIDACVKEGRVSEA 275
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
F+++M+ PD +TY+++ L ++ E E F M+ P + + I
Sbjct: 276 EEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILING 335
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI 237
+ + E ++++ + + G++ + +L+ G G+L+ AEE+ R +
Sbjct: 336 YCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLN----VAEEIFRRMV 388
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 35/194 (18%)
Query: 98 MPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC------------ 145
+P++ ++ ++ + D V ++QM G + T N++ C
Sbjct: 78 LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALS 137
Query: 146 -----------------------LIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLL 182
+ +V++ F +M+ ++P + T I L
Sbjct: 138 FLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLC 197
Query: 183 DADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDV 242
+ + + A+++ N + ++GI P + N L+ GL + GR SD R M R I
Sbjct: 198 KSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVF 257
Query: 243 TMQKLKKAFYNESR 256
T L A E R
Sbjct: 258 TFNALIDACVKEGR 271
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 4/194 (2%)
Query: 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 61
+ K+G V+EA + MV++ Y + L + +VD+A + R M+G+
Sbjct: 567 YCKKGKVIEACSAYRSMVDQGILGDAKT--YTVLMNGLFKNDKVDDAEEIFREMRGKGIA 624
Query: 62 PTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVF 121
P + + ++ KL + ++D MV G L PN+I+YN ++G C + +++
Sbjct: 625 PDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG--LTPNVIIYNMLLGGFCRSGEIEKAK 682
Query: 122 RFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITML 181
D+M G P+++TY I + K+ + E F EM P T +
Sbjct: 683 ELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742
Query: 182 LDADEPEFAIEIWN 195
++ E AI I+
Sbjct: 743 CRLNDVERAITIFG 756
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 102/255 (40%), Gaps = 16/255 (6%)
Query: 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 62
KEG + +A F M+ P+ AY + + R K V + + L MK N
Sbjct: 358 SKEGVMEKAKALFDGMIAS-GLIPQ-AQAYASLIEGYCREKNVRQGYELLVEMKKRNIVI 415
Query: 63 TLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFR 122
+ + + + D + M+ G PN+++Y ++ N+ + R
Sbjct: 416 SPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCR--PNVVIYTTLIKTFLQNSRFGDAMR 473
Query: 123 FFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLL 182
+M G PD YN + L K K++ E +F EM++N +P I+ +
Sbjct: 474 VLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYI 533
Query: 183 DADEPEFAIEIWNYILENGILPLEASANVLLVGLRN----LGRLSDVRRFAEEMLNRRIL 238
+A E A + + E G+LP VL GL N G++ + M+++ IL
Sbjct: 534 EASEFASADKYVKEMRECGVLP----NKVLCTGLINEYCKKGKVIEACSAYRSMVDQGIL 589
Query: 239 ----IYDVTMQKLKK 249
Y V M L K
Sbjct: 590 GDAKTYTVLMNGLFK 604
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 79/208 (37%), Gaps = 42/208 (20%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ K GN+ +A+ F EMVE E +V+ Y L R ++++A + L M +
Sbjct: 636 GFSKLGNMQKASSIFDEMVE--EGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGL 693
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P + +D K D +L+D M G L+P+ +Y +V C NDV+
Sbjct: 694 HPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG--LVPDSFVYTTLVDGCCRLNDVERA 751
Query: 121 FRFFDQ---------------------------------MVFHGAF-----PDSLTYNMI 142
F + G+F P+ +TYN++
Sbjct: 752 ITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIM 811
Query: 143 FECLIKNKKVHEVENFFHEMIKNEWQPT 170
+ L K + + FH+M PT
Sbjct: 812 IDYLCKEGNLEAAKELFHQMQNANLMPT 839
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/238 (19%), Positives = 95/238 (39%), Gaps = 6/238 (2%)
Query: 1 GWEKEGNVVEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 59
G+ +E NV + + EM +R +P Y T + + +D A ++ M
Sbjct: 391 GYCREKNVRQGYELLVEMKKRNIVISP---YTYGTVVKGMCSSGDLDGAYNIVKEMIASG 447
Query: 60 CFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDN 119
C P + ++ + ++ + +++ M G + P++ YN+++ L +D
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG--IAPDIFCYNSLIIGLSKAKRMDE 505
Query: 120 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAIT 179
F +MV +G P++ TY I+ + + + EM + P + C I
Sbjct: 506 ARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLIN 565
Query: 180 MLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI 237
+ A + +++ GIL + VL+ GL ++ D EM + I
Sbjct: 566 EYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGI 623
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 90/231 (38%), Gaps = 7/231 (3%)
Query: 32 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMV 91
Y+ + L + K++++A L M +S +D L+K ++ L MV
Sbjct: 280 YDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMV 339
Query: 92 GIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKK 151
G N+ P MY+ + ++ ++ FD M+ G P + Y + E + K
Sbjct: 340 SHGINIKP--YMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397
Query: 152 VHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANV 211
V + EM K +P T + + + + + A I ++ +G P
Sbjct: 398 VRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTT 457
Query: 212 LLVGLRNLGRLSDVRRFAEEM----LNRRILIYDVTMQKLKKA-FYNESRS 257
L+ R D R +EM + I Y+ + L KA +E+RS
Sbjct: 458 LIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARS 508
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/240 (19%), Positives = 94/240 (39%), Gaps = 10/240 (4%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ K G++ EA + F EM + + Y T + R V+ A+ K + C
Sbjct: 706 GYCKSGDLAEAFRLFDEM--KLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK-KGC 762
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLM--PNLIMYNAVVGLLCNNNDVD 118
+ F+ ++ + K + ++ + ++ F+ PN + YN ++ LC +++
Sbjct: 763 ASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLE 822
Query: 119 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAI 178
F QM P +TY + K + E+ F E I +P + + I
Sbjct: 823 AAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVII 882
Query: 179 TMLLDADEPEFAIEIWNYI-----LENGILPLEASANVLLVGLRNLGRLSDVRRFAEEML 233
L A+ + + + +++G ++ LL G +G + + E M+
Sbjct: 883 NAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMV 942
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 6/158 (3%)
Query: 96 NLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEV 155
L+P Y+ ++ LC +++ +M G D+ TY+++ + L+K +
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331
Query: 156 ENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVG 215
+ HEM+ + P I ++ E A +++ ++ +G++P +A A L+
Sbjct: 332 KGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIP-QAQAYASLI- 389
Query: 216 LRNLGRLSDVRRFAE---EMLNRRILIYDVTMQKLKKA 250
R +VR+ E EM R I+I T + K
Sbjct: 390 -EGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKG 426
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 100/217 (46%), Gaps = 6/217 (2%)
Query: 10 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 69
+ K +M++R + P+ V+A+ + ++ ++ EA + + M P +++
Sbjct: 300 DGAKLLRDMIKR-KITPD-VVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTS 357
Query: 70 ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129
+D K N + D+MV G PN+ +N ++ C N +D+ F +M
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKGCG--PNIRTFNILINGYCKANLIDDGLELFRKMSL 415
Query: 130 HGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEF 189
G D++TYN + + + K+ + F EM+ +P ++ + L D EPE
Sbjct: 416 RGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEK 475
Query: 190 AIEIWNYILENGILPLEASA-NVLLVGLRNLGRLSDV 225
A+EI+ I E + L+ N+++ G+ N ++ D
Sbjct: 476 ALEIFEKI-EKSKMELDIGIYNIIIHGMCNASKVDDA 511
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 98/246 (39%), Gaps = 4/246 (1%)
Query: 6 GNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 65
G V +A MVE + P V Y L + + Q A++ LR M+
Sbjct: 191 GKVSDAVLLIDRMVET-GFQPNEV-TYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAV 248
Query: 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFD 125
+S +D L K + L++ M GF ++I+Y ++ C D+ +
Sbjct: 249 KYSIIIDGLCKDGSLDNAFNLFNEMEIKGFK--ADIIIYTTLIRGFCYAGRWDDGAKLLR 306
Query: 126 QMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDAD 185
M+ PD + ++ + +C +K K+ E E EMI+ P + + I +
Sbjct: 307 DMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKEN 366
Query: 186 EPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQ 245
+ + A + + ++ G P + N+L+ G + D +M R ++ VT
Sbjct: 367 QLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYN 426
Query: 246 KLKKAF 251
L + F
Sbjct: 427 TLIQGF 432
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 92/238 (38%), Gaps = 41/238 (17%)
Query: 1 GWEKEGNVVEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 59
G K+G++ A F EM ++ F+ + ++ Y T + + D+ K LR M
Sbjct: 256 GLCKDGSLDNAFNLFNEMEIKGFKAD---IIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK 312
Query: 60 CFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDN 119
P + FS +D VK +L M+ G + P+ + Y +++ C N +D
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGIS--PDTVTYTSLIDGFCKENQLDK 370
Query: 120 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAIT 179
D MV G P+ T+N++ K + +
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDD------------------------- 405
Query: 180 MLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI 237
+E++ + G++ + N L+ G LG+L + +EM++RR+
Sbjct: 406 ----------GLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRV 453
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 101/246 (41%), Gaps = 4/246 (1%)
Query: 11 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 70
A G+++ + + P+ V + T + L +V EAL+ + M PTL +
Sbjct: 126 AFSAMGKII-KLGYEPDTV-TFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNAL 183
Query: 71 LDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130
++ L + V L D MV GF PN + Y V+ ++C + +M
Sbjct: 184 VNGLCLNGKVSDAVLLIDRMVETGFQ--PNEVTYGPVLKVMCKSGQTALAMELLRKMEER 241
Query: 131 GAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFA 190
D++ Y++I + L K+ + N F+EM ++ + T I A +
Sbjct: 242 KIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDG 301
Query: 191 IEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKA 250
++ +++ I P + + L+ G+L + +EM+ R I VT L
Sbjct: 302 AKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDG 361
Query: 251 FYNESR 256
F E++
Sbjct: 362 FCKENQ 367
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEM 162
+YN ++ +CN + VD+ + F + G PD TYN++ L K + E + F +M
Sbjct: 494 IYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKM 553
Query: 163 IKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRL 222
++ P I L + + ++ I G ++AS ++V + + GRL
Sbjct: 554 EEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG-FSVDASTVKMVVDMLSDGRL 612
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 60/135 (44%)
Query: 99 PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENF 158
P LI ++ + ++ D V QM G + T +++ C + +K+ +
Sbjct: 70 PRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSA 129
Query: 159 FHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRN 218
++IK ++P + +T I L A+E+ + ++E G P + N L+ GL
Sbjct: 130 MGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCL 189
Query: 219 LGRLSDVRRFAEEML 233
G++SD + M+
Sbjct: 190 NGKVSDAVLLIDRMV 204
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 74/194 (38%), Gaps = 6/194 (3%)
Query: 46 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIM--VGIGFNLMPNLIM 103
D+A+ + M P L FS ++ + + L M GI NL IM
Sbjct: 54 DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113
Query: 104 YNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMI 163
N C + F +++ G PD++T++ + L +V E M+
Sbjct: 114 INCC----CRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMV 169
Query: 164 KNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLS 223
+ +PT + + L + A+ + + ++E G P E + +L + G+ +
Sbjct: 170 EMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTA 229
Query: 224 DVRRFAEEMLNRRI 237
+M R+I
Sbjct: 230 LAMELLRKMEERKI 243
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 4/234 (1%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
K G+V A F +M E + P+ V+ Y + + L + +A LR M P
Sbjct: 189 KNGHVNYALSLFDQM-ENYGIRPD-VVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPD 246
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ F+ +D VK +L++ M I ++ PN+ Y +++ C VD +
Sbjct: 247 VITFNALIDAFVKEGKFLDAEELYNEM--IRMSIAPNIFTYTSLINGFCMEGCVDEARQM 304
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
F M G FPD + Y + K KKV + F+EM + + T I
Sbjct: 305 FYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQ 364
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI 237
+P A E++++++ G+ P + NVLL L G++ E+M R +
Sbjct: 365 VGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREM 418
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 92/234 (39%), Gaps = 36/234 (15%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
KEG ++A + + EM+ R P ++ Y + + VDEA + +M+ + CFP
Sbjct: 259 KEGKFLDAEELYNEMI-RMSIAP-NIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPD 316
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ +++ ++ K ++++ M G L N I Y ++ +
Sbjct: 317 VVAYTSLINGFCKCKKVDDAMKIFYEMSQKG--LTGNTITYTTLIQGFGQVGKPNVAQEV 374
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
F MV G P+ TYN++ CL N KV + F +M K E +D
Sbjct: 375 FSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKRE---------------MD 419
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI 237
P IW Y NVLL GL G+L E+M R +
Sbjct: 420 GVAP----NIWTY-------------NVLLHGLCYNGKLEKALMVFEDMRKREM 456
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 10/170 (5%)
Query: 62 PTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVF 121
P + F++ ++ N + + + MV +G + P+++MY ++ LC N V+
Sbjct: 140 PDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMG--IKPDVVMYTTIIDSLCKNGHVNYAL 197
Query: 122 RFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITML 181
FDQM +G PD + Y + L + + + ++ M K + +P + L
Sbjct: 198 SLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVI----TFNAL 253
Query: 182 LDA--DEPEF--AIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRR 227
+DA E +F A E++N ++ I P + L+ G G + + R+
Sbjct: 254 IDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQ 303
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 2/166 (1%)
Query: 90 MVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 149
M+ +GF P+++ + +++ C N ++ +QMV G PD + Y I + L KN
Sbjct: 133 MMKLGFE--PDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKN 190
Query: 150 KKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASA 209
V+ + F +M +P + + + L ++ A + + + I P +
Sbjct: 191 GHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITF 250
Query: 210 NVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNES 255
N L+ G+ D EM+ I T L F E
Sbjct: 251 NALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEG 296
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 95/231 (41%), Gaps = 7/231 (3%)
Query: 24 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83
+ P+ V++Y T + R ++D+ K + VMK + P + + + +L ++
Sbjct: 277 YTPD-VISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEA 335
Query: 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIF 143
+ + M+ G ++P+ ++Y ++ C D+ +FF +M PD LTY I
Sbjct: 336 EEAFSEMIRQG--ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 393
Query: 144 ECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGIL 203
+ + E FHEM +P + I A + A + N++++ G
Sbjct: 394 SGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCS 453
Query: 204 PLEASANVLLVGLRNLGRLSDVRRFAEEM----LNRRILIYDVTMQKLKKA 250
P + L+ GL G L EM L I Y+ + L K+
Sbjct: 454 PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKS 504
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 106/256 (41%), Gaps = 14/256 (5%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ K G++ A+K F EM R + P+ VL Y + + + EA K M +
Sbjct: 360 GFCKRGDIRAASKFFYEMHSR-DITPD-VLTYTAIISGFCQIGDMVEAGKLFHEMFCKGL 417
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P F+ ++ K ++ + M+ G + PN++ Y ++ LC D+D+
Sbjct: 418 EPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCS--PNVVTYTTLIDGLCKEGDLDSA 475
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAI-T 179
+M G P+ TYN I L K+ + E E++ LN T T
Sbjct: 476 NELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV-----GEFEAAGLNADTVTYT 530
Query: 180 MLLDA----DEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235
L+DA E + A EI +L G+ P + NVL+ G G L D + ML +
Sbjct: 531 TLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK 590
Query: 236 RILIYDVTMQKLKKAF 251
I T L K +
Sbjct: 591 GIAPNATTFNSLVKQY 606
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 88/211 (41%), Gaps = 5/211 (2%)
Query: 24 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83
WN V +Y + + + ++ EA L +M+ + P + +S ++ + +
Sbjct: 244 WN---VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKV 300
Query: 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIF 143
+L ++M G L PN +Y +++GLLC + F +M+ G PD++ Y +
Sbjct: 301 WKLIEVMKRKG--LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLI 358
Query: 144 ECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGIL 203
+ K + FF+EM + P L I+ + A ++++ + G+
Sbjct: 359 DGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLE 418
Query: 204 PLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234
P + L+ G G + D R M+
Sbjct: 419 PDSVTFTELINGYCKAGHMKDAFRVHNHMIQ 449
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 1/164 (0%)
Query: 99 PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENF 158
P++I Y+ VV C ++D V++ + M G P+S Y I L + K+ E E
Sbjct: 279 PDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEA 338
Query: 159 FHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRN 218
F EMI+ P + T I + A + + + I P + ++ G
Sbjct: 339 FSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 398
Query: 219 LGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRSMRDRF 262
+G + + + EM + + VT +L Y ++ M+D F
Sbjct: 399 IGDMVEAGKLFHEMFCKGLEPDSVTFTELING-YCKAGHMKDAF 441
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 10/165 (6%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G K GN+ EA K GE E N + V Y T + + ++D+A + L+ M G+
Sbjct: 500 GLCKSGNIEEAVKLVGEF-EAAGLNADTV-TYTTLMDAYCKSGEMDKAQEILKEMLGKGL 557
Query: 61 FPTLKFFS---NALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDV 117
PT+ F+ N + L D + W + GI PN +N++V C N++
Sbjct: 558 QPTIVTFNVLMNGFCLHGMLEDGEKLLN-WMLAKGIA----PNATTFNSLVKQYCIRNNL 612
Query: 118 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEM 162
+ M G PD TY + + K + + E F EM
Sbjct: 613 KAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEM 657
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 54/138 (39%)
Query: 100 NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFF 159
N+ YN V+ +C + M G PD ++Y+ + + ++ +V
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304
Query: 160 HEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNL 219
M + +P + I +L + A E ++ ++ GILP L+ G
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364
Query: 220 GRLSDVRRFAEEMLNRRI 237
G + +F EM +R I
Sbjct: 365 GDIRAASKFFYEMHSRDI 382
>sp|Q9M316|PP292_ARATH Pentatricopeptide repeat-containing protein At3g61520,
mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2
SV=1
Length = 766
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 3/206 (1%)
Query: 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLW 87
+V+ Y T + V++A+ + M C P K + + L ++ +++
Sbjct: 475 NVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVV 534
Query: 88 DIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 147
+ + GF+L +L+ YN ++GL C+ N+ + V+ M G PDS+TYN +
Sbjct: 535 EKLKEGGFSL--DLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLISFFG 592
Query: 148 KNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYI-LENGILPLE 206
K+K VE +M ++ PT I E + A++++ + L + + P
Sbjct: 593 KHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNT 652
Query: 207 ASANVLLVGLRNLGRLSDVRRFAEEM 232
N+L+ LG EEM
Sbjct: 653 VIYNILINAFSKLGNFGQALSLKEEM 678
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/157 (17%), Positives = 65/157 (41%), Gaps = 1/157 (0%)
Query: 30 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDI 89
+ Y T + + K + + + M+ + PT+ + +D + + ++L+
Sbjct: 582 ITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKD 641
Query: 90 MVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 149
M G+ + PN ++YN ++ + ++M P+ TYN +F+CL +
Sbjct: 642 M-GLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEK 700
Query: 150 KKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADE 186
+ + EM++ +P + + L +DE
Sbjct: 701 TQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDE 737
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 80/201 (39%), Gaps = 7/201 (3%)
Query: 38 TLIRGKQVDEALKFLRVMKGE-----NCFPTLKF-FSNALDILVKLNDSTHTVQLWDIMV 91
TL + ++VDEAL+ M+G+ N F+ +D L K+ +L + +
Sbjct: 338 TLCKSRRVDEALEVFEKMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELL-VRM 396
Query: 92 GIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKK 151
+ PN + YN ++ C ++ +M P+ +T N I + ++
Sbjct: 397 KLEERCAPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHG 456
Query: 152 VHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANV 211
++ FF +M K + + T I E A+ + +LE G P
Sbjct: 457 LNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYA 516
Query: 212 LLVGLRNLGRLSDVRRFAEEM 232
L+ GL + R D R E++
Sbjct: 517 LISGLCQVRRDHDAIRVVEKL 537
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 99 PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENF 158
PN++ N +VG +C ++ ++ FF M G + +TY + V + +
Sbjct: 439 PNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYW 498
Query: 159 FHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGL 216
+ +M++ P I+ L AI + + E G L+ A +L+GL
Sbjct: 499 YEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGG-FSLDLLAYNMLIGL 555
>sp|Q9LKU8|PP401_ARATH Pentatricopeptide repeat-containing protein At5g28460
OS=Arabidopsis thaliana GN=At5g28460 PE=2 SV=1
Length = 766
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 3/206 (1%)
Query: 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLW 87
+V+ Y T + V++A+ + M C P K + + L ++ +++
Sbjct: 475 NVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVV 534
Query: 88 DIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 147
+ + GF+L +L+ YN ++GL C+ N+ + V+ M G PDS+TYN +
Sbjct: 535 EKLKEGGFSL--DLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFG 592
Query: 148 KNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYI-LENGILPLE 206
K+K VE +M ++ PT I E + A++++ + L + + P
Sbjct: 593 KHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNT 652
Query: 207 ASANVLLVGLRNLGRLSDVRRFAEEM 232
N+L+ LG EEM
Sbjct: 653 VIYNILINAFSKLGNFGQALSLKEEM 678
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/157 (17%), Positives = 65/157 (41%), Gaps = 1/157 (0%)
Query: 30 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDI 89
+ Y T + + K + + + M+ + PT+ + +D + + ++L+
Sbjct: 582 ITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKD 641
Query: 90 MVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 149
M G+ + PN ++YN ++ + ++M P+ TYN +F+CL +
Sbjct: 642 M-GLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEK 700
Query: 150 KKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADE 186
+ + EM++ +P + + L +DE
Sbjct: 701 TQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDE 737
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 81/201 (40%), Gaps = 7/201 (3%)
Query: 38 TLIRGKQVDEALKFLRVMKGE-----NCFPTLKF-FSNALDILVKLNDSTHTVQLWDIMV 91
TL + ++VDEAL+ M+G+ N F+ +D L K+ +L + +
Sbjct: 338 TLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELL-VRM 396
Query: 92 GIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKK 151
+ +PN + YN ++ C ++ +M P+ +T N I + ++
Sbjct: 397 KLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHG 456
Query: 152 VHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANV 211
++ FF +M K + + T I E A+ + +LE G P
Sbjct: 457 LNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYA 516
Query: 212 LLVGLRNLGRLSDVRRFAEEM 232
L+ GL + R D R E++
Sbjct: 517 LISGLCQVRRDHDAIRVVEKL 537
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 94/229 (41%), Gaps = 22/229 (9%)
Query: 20 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFL-RVMKGENCFPTLKFFSNALDILV--- 75
ER + N ++ + L+R VD+A K L +++ E+ FP + + DI++
Sbjct: 176 ERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITA---DIVLHEV 232
Query: 76 ---KLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGA 132
+L + L G + PN + + LC N + + ++ +
Sbjct: 233 WKERLLTEEKIIALISRFSSHGVS--PNSVWLTRFISSLCKNARANTAWDILSDLMKNKT 290
Query: 133 FPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIE 192
++ +N + CL +N + + + +M + + +P + I L + + A+E
Sbjct: 291 PLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALE 350
Query: 193 IWNYIL------ENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235
++ + N I N L+ GL +GRL + AEE+L R
Sbjct: 351 VFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKE----AEELLVR 395
Score = 34.7 bits (78), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 75/188 (39%), Gaps = 4/188 (2%)
Query: 30 LAYETFLITLIRGKQVDEALKFLRVMK-GENCFPTLKFFSNALDILVKLNDSTHTVQLWD 88
+ + T + L + ++ EA + L MK E C P ++ +D + ++
Sbjct: 371 IHFNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVS 430
Query: 89 IMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148
M + PN++ N +VG +C ++ ++ FF M G + +TY +
Sbjct: 431 RMKE--DEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCS 488
Query: 149 NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEAS 208
V + ++ +M++ P I+ L AI + + E G L+
Sbjct: 489 VSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGG-FSLDLL 547
Query: 209 ANVLLVGL 216
A +L+GL
Sbjct: 548 AYNMLIGL 555
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 99/213 (46%), Gaps = 4/213 (1%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
KEG VEA K +M++R +P+ + Y + + ++D+A + M ++CFP
Sbjct: 267 KEGKFVEAEKLHDDMIKR-SIDPD-IFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPD 324
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
L ++ + K +L+ M G L+ + + Y ++ L ++ D DN +
Sbjct: 325 LDTYNTLIKGFCKSKRVEDGTELFREMSHRG--LVGDTVTYTTLIQGLFHDGDCDNAQKV 382
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
F QMV G PD +TY+++ + L N K+ + F M K+E + T I +
Sbjct: 383 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 442
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGL 216
A + + +++ + G+ P + N ++ GL
Sbjct: 443 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 475
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 103/248 (41%), Gaps = 14/248 (5%)
Query: 30 LAYETFLITL-------IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82
L YE ++TL GK++ +A+ + M P F+ + L N ++
Sbjct: 74 LGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASE 133
Query: 83 TVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMI 142
V L D MV G PNL+ Y VV LC D+D F ++M D + +N I
Sbjct: 134 AVALVDRMVQRGCQ--PNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTI 191
Query: 143 FECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI 202
+ L K + V + N F EM +P + ++ I+ L A ++ + ++E I
Sbjct: 192 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 251
Query: 203 LPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRSMRDRF 262
P + N L+ G+ + + ++M+ R I T L F M DR
Sbjct: 252 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGF-----CMHDRL 306
Query: 263 DSLERRWK 270
D ++ ++
Sbjct: 307 DKAKQMFE 314
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 6/227 (2%)
Query: 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLW 87
+V+ Y + + L + +A + L M + P L F+ +D VK +L
Sbjct: 219 NVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLH 278
Query: 88 DIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 147
D M+ + P++ YN+++ C ++ +D + F+ MV FPD TYN + +
Sbjct: 279 DDMIKRSID--PDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFC 336
Query: 148 KNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEA 207
K+K+V + F EM + T I L + + A +++ ++ +G+ P
Sbjct: 337 KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIM 396
Query: 208 SANVLLVGLRNLGRLSDVRRFAEEM----LNRRILIYDVTMQKLKKA 250
+ ++LL GL N G+L + M + I IY ++ + KA
Sbjct: 397 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKA 443
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 4/246 (1%)
Query: 10 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 69
EA MV+R P +++ Y + L + +D A L M+ + F+
Sbjct: 133 EAVALVDRMVQR-GCQP-NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNT 190
Query: 70 ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129
+D L K + L+ M G + PN++ Y++++ LC+ + + M+
Sbjct: 191 IIDSLCKYRHVDDALNLFKEMETKG--IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 248
Query: 130 HGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEF 189
P+ +T+N + + +K K E E +MIK P + I D +
Sbjct: 249 KKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDK 308
Query: 190 AIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKK 249
A +++ +++ P + N L+ G R+ D EM +R ++ VT L +
Sbjct: 309 AKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 368
Query: 250 AFYNES 255
+++
Sbjct: 369 GLFHDG 374
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 6/163 (3%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G +G+ A K F +MV + P ++ Y L L ++++AL+ M+
Sbjct: 369 GLFHDGDCDNAQKVFKQMVS--DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 426
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGF-NLMPNLIMYNAVVGLLCNNNDVDN 119
+ ++ ++ + K + WD+ + + PN++ YN ++ LC+ +
Sbjct: 427 KLDIYIYTTMIEGMCK---AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQE 483
Query: 120 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEM 162
+ +M G PDS TYN + +++ EM
Sbjct: 484 AYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 526
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 6/171 (3%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ K V + + F EM R + Y T + L D A K + M +
Sbjct: 334 GFCKSKRVEDGTELFREMSHRGLVG--DTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P + +S LD L ++++D M L ++ +Y ++ +C VD+
Sbjct: 392 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL--DIYIYTTMIEGMCKAGKVDDG 449
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTP 171
+ F + G P+ +TYN + L + + E +M E P P
Sbjct: 450 WDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM--KEDGPLP 498
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/156 (17%), Positives = 65/156 (41%), Gaps = 4/156 (2%)
Query: 98 MPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVEN 157
+P++ +N ++ + D V ++M G + TYN++ C + ++
Sbjct: 7 LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 66
Query: 158 FFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLR 217
+M+K ++P+ + ++ + A+ + + ++E G P + L+ GL
Sbjct: 67 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 126
Query: 218 NLGRLSDVRRFAEEMLNR----RILIYDVTMQKLKK 249
+ S+ + M+ R ++ Y V + L K
Sbjct: 127 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCK 162
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 6/227 (2%)
Query: 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLW 87
+V+ Y + + L + +A + L M + P L F+ +D VK +L+
Sbjct: 294 NVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLY 353
Query: 88 DIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 147
D M+ + P++ YN++V C ++ +D + F+ MV FPD +TYN + +
Sbjct: 354 DDMIKRSID--PDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFC 411
Query: 148 KNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEA 207
K+K+V + F EM + T I L + + A +++ ++ +G+ P
Sbjct: 412 KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIM 471
Query: 208 SANVLLVGLRNLGRLSDVRRFAEEM----LNRRILIYDVTMQKLKKA 250
+ ++LL GL N G+L + M + I IY ++ + KA
Sbjct: 472 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKA 518
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 100/213 (46%), Gaps = 4/213 (1%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
KEG VEA K + +M++R +P+ + Y + + ++D+A + M ++CFP
Sbjct: 342 KEGKFVEAEKLYDDMIKR-SIDPD-IFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPD 399
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ ++ + K +L+ M G L+ + + Y ++ L ++ D DN +
Sbjct: 400 VVTYNTLIKGFCKSKRVEDGTELFREMSHRG--LVGDTVTYTTLIQGLFHDGDCDNAQKV 457
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
F QMV G PD +TY+++ + L N K+ + F M K+E + T I +
Sbjct: 458 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 517
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGL 216
A + + +++ + G+ P + N ++ GL
Sbjct: 518 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 550
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 14/248 (5%)
Query: 30 LAYETFLITL-------IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82
L YE ++TL GK++ +A+ + M P F+ + L N ++
Sbjct: 149 LGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASE 208
Query: 83 TVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMI 142
V L D MV G PNL+ Y VV LC D D ++M D + +N I
Sbjct: 209 AVALVDRMVQRGCQ--PNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTI 266
Query: 143 FECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI 202
+ L K + V + N F EM +P + ++ I+ L A ++ + ++E I
Sbjct: 267 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 326
Query: 203 LPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRSMRDRF 262
P + N L+ G+ + + ++M+ R I T L F M DR
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGF-----CMHDRL 381
Query: 263 DSLERRWK 270
D ++ ++
Sbjct: 382 DKAKQMFE 389
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 101/246 (41%), Gaps = 4/246 (1%)
Query: 10 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 69
EA MV+R P +++ Y + L + D AL L M+ + F+
Sbjct: 208 EAVALVDRMVQR-GCQP-NLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNT 265
Query: 70 ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129
+D L K + L+ M G + PN++ Y++++ LC+ + + M+
Sbjct: 266 IIDSLCKYRHVDDALNLFKEMETKG--IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 323
Query: 130 HGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEF 189
P+ +T+N + + +K K E E + +MIK P + + D +
Sbjct: 324 KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK 383
Query: 190 AIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKK 249
A +++ +++ P + N L+ G R+ D EM +R ++ VT L +
Sbjct: 384 AKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 443
Query: 250 AFYNES 255
+++
Sbjct: 444 GLFHDG 449
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 67/163 (41%), Gaps = 6/163 (3%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G +G+ A K F +MV + P ++ Y L L ++++AL+ M+
Sbjct: 444 GLFHDGDCDNAQKVFKQMVS--DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 501
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGF-NLMPNLIMYNAVVGLLCNNNDVDN 119
+ ++ ++ + K + WD+ + + PN++ YN ++ LC+ +
Sbjct: 502 KLDIYIYTTMIEGMCK---AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQE 558
Query: 120 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEM 162
+ +M G P+S TYN + +++ EM
Sbjct: 559 AYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 601
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 11/194 (5%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ K V + + F EM R + Y T + L D A K + M +
Sbjct: 409 GFCKSKRVEDGTELFREMSHRGLVG--DTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P + +S LD L ++++D M L ++ +Y ++ +C VD+
Sbjct: 467 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL--DIYIYTTMIEGMCKAGKVDDG 524
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+ F + G P+ +TYN + L + + E +M E P P N T T+
Sbjct: 525 WDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM--KEDGPLP-NSGTYNTL 581
Query: 181 ----LLDADEPEFA 190
L D D+ A
Sbjct: 582 IRAHLRDGDKAASA 595
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/202 (18%), Positives = 84/202 (41%), Gaps = 16/202 (7%)
Query: 60 CFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNL----MPNLIMYNAVVGLLCNNN 115
C+ F S + D L + H ++L D + G + +P+++ +N ++ +
Sbjct: 40 CYWGRAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMK 99
Query: 116 DVDNVFRFFDQM----VFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTP 171
D V ++M + HG + TYN++ C + ++ +M+K ++P+
Sbjct: 100 KFDVVISLGEKMQRLEIVHGLY----TYNILINCFCRRSQISLALALLGKMMKLGYEPSI 155
Query: 172 LNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEE 231
+ ++ + A+ + + ++E G P + L+ GL + S+ +
Sbjct: 156 VTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDR 215
Query: 232 MLNR----RILIYDVTMQKLKK 249
M+ R ++ Y V + L K
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCK 237
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 3/210 (1%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
KEG +VEA K + EMV+ P+ V+AY T + + K+V+E ++ R M
Sbjct: 332 KEGKLVEAEKLYDEMVKSKHCFPD-VVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 390
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
++ + + D + ++ MV G + P+++ YN ++ LCNN +V+
Sbjct: 391 TVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVH--PDIMTYNILLDGLCNNGNVETALVV 448
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
F+ M D +TY + E L K KV + + F + +P + T ++
Sbjct: 449 FEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCR 508
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLL 213
E A ++ + E+G LP + N L+
Sbjct: 509 KGLKEEADALFVEMKEDGPLPNSGTYNTLI 538
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 101/243 (41%), Gaps = 3/243 (1%)
Query: 14 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 73
+ GE ++ + ++ Y F+ R Q+ AL L M P++ ++ L+
Sbjct: 96 SLGEQMQNLGIS-HNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNG 154
Query: 74 LVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAF 133
N + V L D MV +G+ P+ + + +V L +N ++MV G
Sbjct: 155 FCHGNRISEAVALVDQMVEMGYQ--PDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQ 212
Query: 134 PDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEI 193
PD +TY + L K + N ++M K + + + T I L + A ++
Sbjct: 213 PDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDL 272
Query: 194 WNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYN 253
+N + GI P + N L+ L N GR SD R +ML + I V L AF
Sbjct: 273 FNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVK 332
Query: 254 ESR 256
E +
Sbjct: 333 EGK 335
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 97/227 (42%), Gaps = 7/227 (3%)
Query: 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWD 88
V+ Y T + L + K +D+A M+ + P + ++ + L + +L
Sbjct: 250 VVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLS 309
Query: 89 IMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMV-FHGAFPDSLTYNMIFECLI 147
M + N+ P+L+ +NA++ + + +D+MV FPD + YN + +
Sbjct: 310 DM--LEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFC 367
Query: 148 KNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEA 207
K K+V E F EM + + T I A + + A ++ ++ +G+ P
Sbjct: 368 KYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIM 427
Query: 208 SANVLLVGLRNLGRLSDVRRFAEEMLNR----RILIYDVTMQKLKKA 250
+ N+LL GL N G + E M R I+ Y ++ L KA
Sbjct: 428 TYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKA 474
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 5/243 (2%)
Query: 15 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 74
G+M+ + + P ++ + L G ++ EA+ + M P F+ + L
Sbjct: 133 LGKMM-KLGYGPS-IVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGL 190
Query: 75 VKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP 134
+ N ++ V L + MV G P+L+ Y AV+ LC + D ++M
Sbjct: 191 FQHNKASEAVALVERMVVKG--CQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEA 248
Query: 135 DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIW 194
D + YN I + L K K + + + F++M +P I+ L + A +
Sbjct: 249 DVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLL 308
Query: 195 NYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTM-QKLKKAFYN 253
+ +LE I P N L+ G+L + + +EM+ + DV L K F
Sbjct: 309 SDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCK 368
Query: 254 ESR 256
R
Sbjct: 369 YKR 371
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 7/216 (3%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G K G V +A + F M ER + V Y + + L + +A + +R M +
Sbjct: 183 GSCKIGLVNDAVELFDRM-ERDGVRADAV-TYNSLVAGLCCSGRWSDAARLMRDMVMRDI 240
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P + F+ +D+ VK + ++L++ M + P++ YN+++ LC + VD
Sbjct: 241 VPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVD--PDVFTYNSLINGLCMHGRVDEA 298
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+ D MV G PD +TYN + K+K+V E F EM + + T I
Sbjct: 299 KQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQG 358
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGL 216
A P+ A EI++ + P + ++LL GL
Sbjct: 359 YFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGL 391
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 93/226 (41%), Gaps = 2/226 (0%)
Query: 31 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIM 90
+Y + L R + AL + M P + S+ ++ + N + L M
Sbjct: 106 SYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKM 165
Query: 91 VGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 150
+GF P++++YN ++ C V++ FD+M G D++TYN + L +
Sbjct: 166 EEMGFR--PDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSG 223
Query: 151 KVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASAN 210
+ + +M+ + P + I + + + A++++ + + P + N
Sbjct: 224 RWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYN 283
Query: 211 VLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256
L+ GL GR+ + ++ + M+ + L VT L F R
Sbjct: 284 SLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKR 329
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 32/232 (13%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
KEG EA K + EM R +P+ V Y + + L +VDEA + L +M + C P
Sbjct: 256 KEGKFSEAMKLYEEMTRRC-VDPD-VFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPD 313
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIG---------------------------FN 96
+ ++ ++ K +L+ M G F+
Sbjct: 314 VVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFS 373
Query: 97 LM---PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVH 153
M PN+ Y+ ++ LC N V+ F+ M D TYN++ + K V
Sbjct: 374 RMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVE 433
Query: 154 EVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPL 205
+ + F + +P ++ T I+ + + + ++ + E+G+LPL
Sbjct: 434 DAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLPL 485
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/194 (19%), Positives = 78/194 (40%), Gaps = 35/194 (18%)
Query: 98 MPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVEN 157
+P+++ ++ V+ + + + D V F M G D +YN++ CL + + +
Sbjct: 66 LPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALS 125
Query: 158 FFHEMIKNEWQPTPLNCAT-------------AITMLLDADEPEF--------------- 189
+M+K ++P + ++ AI ++ +E F
Sbjct: 126 VVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSC 185
Query: 190 -------AIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDV 242
A+E+++ + +G+ + N L+ GL GR SD R +M+ R I+ +
Sbjct: 186 KIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVI 245
Query: 243 TMQKLKKAFYNESR 256
T + F E +
Sbjct: 246 TFTAVIDVFVKEGK 259
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 105/226 (46%), Gaps = 6/226 (2%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ G + K +M++R + NP +V+ + + + ++ ++ EA + + M
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKR-KINP-NVVTFSVLIDSFVKEGKLREAEELHKEMIHRGI 364
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P +++ +D K N Q+ D+MV G + PN+ +N ++ C N +D+
Sbjct: 365 APDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCD--PNIRTFNILINGYCKANRIDDG 422
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
F +M G D++TYN + + + K++ + F EM+ + P + +
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 482
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASA-NVLLVGLRNLGRLSDV 225
L D E E A+EI+ I E + L+ N+++ G+ N ++ D
Sbjct: 483 LCDNGESEKALEIFEKI-EKSKMELDIGIYNIIIHGMCNASKVDDA 527
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 4/251 (1%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G G EA +MVE + P V Y L + + Q A++ LR M+ N
Sbjct: 202 GLCLSGKEAEAMLLIDKMVE-YGCQPNAV-TYGPVLNVMCKSGQTALAMELLRKMEERNI 259
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
+S +D L K + L++ M G + N+I YN ++G CN D+
Sbjct: 260 KLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG--ITTNIITYNILIGGFCNAGRWDDG 317
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+ M+ P+ +T++++ + +K K+ E E EMI P + + I
Sbjct: 318 AKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDG 377
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240
+ + A ++ + ++ G P + N+L+ G R+ D +M R ++
Sbjct: 378 FCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVAD 437
Query: 241 DVTMQKLKKAF 251
VT L + F
Sbjct: 438 TVTYNTLIQGF 448
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 2/195 (1%)
Query: 62 PTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVF 121
P FS ++ L + ++L D MV +G P+LI N +V LC +
Sbjct: 156 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK--PDLITINTLVNGLCLSGKEAEAM 213
Query: 122 RFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITML 181
D+MV +G P+++TY + + K+ + +M + + + + I L
Sbjct: 214 LLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGL 273
Query: 182 LDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYD 241
+ A ++N + GI + N+L+ G N GR D + +M+ R+I
Sbjct: 274 CKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNV 333
Query: 242 VTMQKLKKAFYNESR 256
VT L +F E +
Sbjct: 334 VTFSVLIDSFVKEGK 348
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 2/228 (0%)
Query: 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWD 88
V+ + + + KQ D L + M+ + L S ++ +
Sbjct: 88 VIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMG 147
Query: 89 IMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148
++ +G+ PN I ++ ++ LC V D+MV G PD +T N + L
Sbjct: 148 KIIKLGYE--PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205
Query: 149 NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEAS 208
+ K E +M++ QP + + ++ + + A+E+ + E I
Sbjct: 206 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 209 ANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256
++++ GL G L + EM + I +T L F N R
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGR 313
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 96/254 (37%), Gaps = 39/254 (15%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G EG V EA + MVE P+ ++ T + L + EA+ + M C
Sbjct: 167 GLCLEGRVSEALELVDRMVE-MGHKPD-LITINTLVNGLCLSGKEAEAMLLIDKMVEYGC 224
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P + L+++ K + ++L M N+ + + Y+ ++ LC + +DN
Sbjct: 225 QPNAVTYGPVLNVMCKSGQTALAMELLRKMEE--RNIKLDAVKYSIIIDGLCKHGSLDNA 282
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
F F++M G + +TYN++ + + +MIK + P +
Sbjct: 283 FNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT------- 335
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240
F++ I +++ E G+L + +EM++R I
Sbjct: 336 --------FSVLIDSFVKE--------------------GKLREAEELHKEMIHRGIAPD 367
Query: 241 DVTMQKLKKAFYNE 254
+T L F E
Sbjct: 368 TITYTSLIDGFCKE 381
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 38 TLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGI 93
TLI+G +++ A + + M P + + LD L +S +++++ +
Sbjct: 443 TLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKS 502
Query: 94 GFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVH 153
L ++ +YN ++ +CN + VD+ + F + G P TYN++ L K +
Sbjct: 503 KMEL--DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLS 560
Query: 154 EVENFFHEMIKNEWQP 169
E E F +M ++ P
Sbjct: 561 EAELLFRKMEEDGHAP 576
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/185 (19%), Positives = 74/185 (40%), Gaps = 6/185 (3%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ + G + A + F EMV R P +++ Y+ L L + ++AL+ ++
Sbjct: 447 GFCELGKLNVAKELFQEMVSR--KVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKM 504
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGF-NLMPNLIMYNAVVGLLCNNNDVDN 119
+ ++ I+ + +++ WD+ + + P + YN ++G LC +
Sbjct: 505 ELDIGIYNI---IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSE 561
Query: 120 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAIT 179
F +M G PD TYN++ + + + E+ + + I
Sbjct: 562 AELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID 621
Query: 180 MLLDA 184
ML D
Sbjct: 622 MLSDG 626
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 60/136 (44%)
Query: 98 MPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVEN 157
+P +I ++ + + D V QM G + T +++ C + +K+ +
Sbjct: 85 LPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFS 144
Query: 158 FFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLR 217
++IK ++P + +T I L A+E+ + ++E G P + N L+ GL
Sbjct: 145 AMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLC 204
Query: 218 NLGRLSDVRRFAEEML 233
G+ ++ ++M+
Sbjct: 205 LSGKEAEAMLLIDKMV 220
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 94/201 (46%), Gaps = 4/201 (1%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
KEG +VEA K + EM++R +P+ + Y + + ++DEA +M ++CFP
Sbjct: 337 KEGKLVEAEKLYDEMIKR-SIDPD-IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 394
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ ++ + K ++L+ M G L+ N + YN ++ L D D +
Sbjct: 395 VVTYNTLIKGFCKAKRVEEGMELFREMSQRG--LVGNTVTYNTLIQGLFQAGDCDMAQKI 452
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
F +MV G PD +TY+++ + L K K+ + F + K++ +P I +
Sbjct: 453 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 512
Query: 184 ADEPEFAIEIWNYILENGILP 204
A + E +++ + G+ P
Sbjct: 513 AGKVEDGWDLFCSLSLKGVKP 533
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 111/248 (44%), Gaps = 8/248 (3%)
Query: 7 NVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 66
NV +A F EM + P +V+ Y + + L + +A + L M P +
Sbjct: 270 NVNDALNLFTEMDNK-GIRP-NVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT 327
Query: 67 FSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQ 126
FS +D VK +L+D M+ + P++ Y++++ C ++ +D F+
Sbjct: 328 FSALIDAFVKEGKLVEAEKLYDEMIKRSID--PDIFTYSSLINGFCMHDRLDEAKHMFEL 385
Query: 127 MVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADE 186
M+ FP+ +TYN + + K K+V E F EM + + T I L A +
Sbjct: 386 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 445
Query: 187 PEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR----ILIYDV 242
+ A +I+ ++ +G+ P + ++LL GL G+L E + + I Y++
Sbjct: 446 CDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNI 505
Query: 243 TMQKLKKA 250
++ + KA
Sbjct: 506 MIEGMCKA 513
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 99/244 (40%), Gaps = 4/244 (1%)
Query: 10 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 69
EA MV R P+ + Y T + L + +D AL L+ M+ + ++
Sbjct: 203 EAVALIDRMVAR-GCQPD-LFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTT 260
Query: 70 ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129
+D L + + L+ M G + PN++ YN+++ LCN + R M+
Sbjct: 261 IIDALCNYKNVNDALNLFTEMDNKG--IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 318
Query: 130 HGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEF 189
P+ +T++ + + +K K+ E E + EMIK P ++ I D +
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 378
Query: 190 AIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKK 249
A ++ ++ P + N L+ G R+ + EM R ++ VT L +
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 438
Query: 250 AFYN 253
+
Sbjct: 439 GLFQ 442
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 89/226 (39%), Gaps = 2/226 (0%)
Query: 31 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIM 90
+Y + R Q+ AL L M P + S+ L+ + V L D M
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 176
Query: 91 VGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 150
+ + PN + +N ++ L +N D+MV G PD TY + L K
Sbjct: 177 FVMEYQ--PNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRG 234
Query: 151 KVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASAN 210
+ + +M K + + + T I L + A+ ++ + GI P + N
Sbjct: 235 DIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 294
Query: 211 VLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256
L+ L N GR SD R +M+ R+I VT L AF E +
Sbjct: 295 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 340
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 3/234 (1%)
Query: 23 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82
E+ P V + T + L + EA+ + M C P L + ++ L K D
Sbjct: 180 EYQPNTV-TFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDL 238
Query: 83 TVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMI 142
+ L M + ++++Y ++ LCN +V++ F +M G P+ +TYN +
Sbjct: 239 ALSLLKKMEK--GKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 296
Query: 143 FECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI 202
CL + + +MI+ + P + + I + + A ++++ +++ I
Sbjct: 297 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 356
Query: 203 LPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256
P + + L+ G RL + + E M+++ VT L K F R
Sbjct: 357 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/185 (19%), Positives = 72/185 (38%), Gaps = 6/185 (3%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G + G+ A K F +MV + P ++ Y L L + ++++AL ++
Sbjct: 439 GLFQAGDCDMAQKIFKKMVS--DGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 496
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGF-NLMPNLIMYNAVVGLLCNNNDVDN 119
P + ++ ++ + K + WD+ + + PN+I+Y ++ C +
Sbjct: 497 EPDIYTYNIMIEGMCK---AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEE 553
Query: 120 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAIT 179
F +M G P+S TYN + +++ EM + + I
Sbjct: 554 ADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 613
Query: 180 MLLDA 184
ML D
Sbjct: 614 MLHDG 618
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/208 (18%), Positives = 85/208 (40%), Gaps = 6/208 (2%)
Query: 44 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIM 103
++D+A+ M P++ F+ L + K+N + L + M + + +L
Sbjct: 60 KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISY--DLYS 117
Query: 104 YNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMI 163
YN ++ C + + +M+ G PD +T + + K++ E +M
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMF 177
Query: 164 KNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLG--- 220
E+QP + T I L ++ A+ + + ++ G P + ++ GL G
Sbjct: 178 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 237
Query: 221 -RLSDVRRFAEEMLNRRILIYDVTMQKL 247
LS +++ + + ++IY + L
Sbjct: 238 LALSLLKKMEKGKIEADVVIYTTIIDAL 265
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 109/256 (42%), Gaps = 4/256 (1%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ + +A G+MVE + P+ + T + L R + EA+ + M + C
Sbjct: 160 GFCHGNRISDAVSLVGQMVE-MGYQPDS-FTFNTLIHGLFRHNRASEAVALVDRMVVKGC 217
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P L + ++ L K D + L M + P +++YN ++ LCN +V++
Sbjct: 218 QPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQ--GKIEPGVVIYNTIIDALCNYKNVNDA 275
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
F +M G P+ +TYN + CL + + +MI+ + P + + I
Sbjct: 276 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 335
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240
+ + A ++++ +++ I P + + L+ G RL + + E M+++
Sbjct: 336 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 395
Query: 241 DVTMQKLKKAFYNESR 256
VT L K F R
Sbjct: 396 VVTYNTLIKGFCKAKR 411
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 96/217 (44%), Gaps = 4/217 (1%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
KEG +VEA K + EM++R +P+ + Y + + ++DEA +M ++CFP
Sbjct: 338 KEGKLVEAEKLYDEMIKR-SIDPD-IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 395
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ ++ + K ++L+ M G L+ N + Y ++ + DN
Sbjct: 396 VVTYNTLIKGFCKAKRVDEGMELFREMSQRG--LVGNTVTYTTLIHGFFQARECDNAQIV 453
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
F QMV G PD +TY+++ + L N KV F + +++ +P I +
Sbjct: 454 FKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCK 513
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLG 220
A + E +++ + G+ P + ++ G G
Sbjct: 514 AGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKG 550
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 111/248 (44%), Gaps = 8/248 (3%)
Query: 7 NVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 66
NV +A F EM + P +V+ Y + + L + +A + L M P +
Sbjct: 271 NVNDALNLFTEMDNK-GIRP-NVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT 328
Query: 67 FSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQ 126
FS +D VK +L+D M+ + P++ Y++++ C ++ +D F+
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMIKRSID--PDIFTYSSLINGFCMHDRLDEAKHMFEL 386
Query: 127 MVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADE 186
M+ FP+ +TYN + + K K+V E F EM + + T I A E
Sbjct: 387 MISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARE 446
Query: 187 PEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR----ILIYDV 242
+ A ++ ++ +G+LP + ++LL GL N G++ E + + I Y++
Sbjct: 447 CDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNI 506
Query: 243 TMQKLKKA 250
++ + KA
Sbjct: 507 MIEGMCKA 514
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 3/243 (1%)
Query: 14 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 73
+ GE ++ + ++ Y + R Q+ AL L M P + ++ L+
Sbjct: 102 SLGEQMQNLGIS-HNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNG 160
Query: 74 LVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAF 133
N + V L MV +G+ P+ +N ++ L +N D+MV G
Sbjct: 161 FCHGNRISDAVSLVGQMVEMGYQ--PDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQ 218
Query: 134 PDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEI 193
PD +TY ++ L K + + +M + + +P + T I L + A+ +
Sbjct: 219 PDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNL 278
Query: 194 WNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYN 253
+ + GI P + N L+ L N GR SD R +M+ R+I VT L AF
Sbjct: 279 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338
Query: 254 ESR 256
E +
Sbjct: 339 EGK 341
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 2/224 (0%)
Query: 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWD 88
++ Y + L + +D AL L+ M+ P + ++ +D L + + L+
Sbjct: 221 LVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFT 280
Query: 89 IMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148
M G + PN++ YN+++ LCN + R M+ P+ +T++ + + +K
Sbjct: 281 EMDNKG--IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338
Query: 149 NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEAS 208
K+ E E + EMIK P ++ I D + A ++ ++ P +
Sbjct: 339 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 398
Query: 209 ANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFY 252
N L+ G R+ + EM R ++ VT L F+
Sbjct: 399 YNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFF 442
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 35/195 (17%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ K V E + F EM +R + + Y T + + ++ D A + M +
Sbjct: 405 GFCKAKRVDEGMELFREMSQRGLVG--NTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV 462
Query: 61 FPTLKFFSNALDILV------------------KLNDSTHTVQL--------------WD 88
P + +S LD L K+ +T + WD
Sbjct: 463 LPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWD 522
Query: 89 IMVGIGF-NLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 147
+ + + PN++ Y ++ C + F +M G PDS TYN + +
Sbjct: 523 LFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHL 582
Query: 148 KNKKVHEVENFFHEM 162
++ EM
Sbjct: 583 RDGDKAASAELIREM 597
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/135 (17%), Positives = 57/135 (42%)
Query: 99 PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENF 158
P+++ ++ ++ + N D V +QM G + TY+++ C + ++
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138
Query: 159 FHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRN 218
+M+K ++P + + + + A+ + ++E G P + N L+ GL
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198
Query: 219 LGRLSDVRRFAEEML 233
R S+ + M+
Sbjct: 199 HNRASEAVALVDRMV 213
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 4/229 (1%)
Query: 6 GNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 65
G + EA + F +M +RF P+ + L + + D+ +F + M G PT+
Sbjct: 206 GMLEEAIQCFSKM-KRFRVFPK-TRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVF 263
Query: 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFD 125
++ +D + K D L++ M G L+P+ + YN+++ +D+ FF+
Sbjct: 264 TYNIMIDCMCKEGDVEAARGLFEEMKFRG--LVPDTVTYNSMIDGFGKVGRLDDTVCFFE 321
Query: 126 QMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDAD 185
+M PD +TYN + C K K+ F+ EM N +P ++ +T +
Sbjct: 322 EMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEG 381
Query: 186 EPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234
+ AI+ + + G++P E + L+ +G LSD R EML
Sbjct: 382 MMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQ 430
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 4/206 (1%)
Query: 32 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMV 91
++ LI ++EA++ MK FP + + L KL + + + M+
Sbjct: 195 FDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 254
Query: 92 GIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKK 151
G G P + YN ++ +C DV+ F++M F G PD++TYN + + K +
Sbjct: 255 GAGAR--PTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGR 312
Query: 152 VHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANV 211
+ + FF EM +P + I + +E + + NG+ P S +
Sbjct: 313 LDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYST 372
Query: 212 LLVGLRNLGRLSDVRRFAEEMLNRRI 237
L+ G + +F +M RR+
Sbjct: 373 LVDAFCKEGMMQQAIKFYVDM--RRV 396
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 96/234 (41%), Gaps = 4/234 (1%)
Query: 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 63
KEG+V A F EM +F + Y + + + ++D+ + F MK C P
Sbjct: 274 KEGDVEAARGLFEEM--KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPD 331
Query: 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123
+ ++ ++ K ++ + M G G L PN++ Y+ +V C + +F
Sbjct: 332 VITYNALINCFCKFGKLPIGLEFYREMKGNG--LKPNVVSYSTLVDAFCKEGMMQQAIKF 389
Query: 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183
+ M G P+ TY + + K + + +EM++ + + I L D
Sbjct: 390 YVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCD 449
Query: 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI 237
A+ + A E++ + G++P AS N L+ G + E+ R I
Sbjct: 450 AERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGI 503
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 75/168 (44%)
Query: 65 KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFF 124
+ + +A +L ++ S ++D++ +P +++A+ +L + ++ + F
Sbjct: 156 RMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCF 215
Query: 125 DQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDA 184
+M FP + + N + K K +V+ FF +MI +PT I +
Sbjct: 216 SKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKE 275
Query: 185 DEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEM 232
+ E A ++ + G++P + N ++ G +GRL D F EEM
Sbjct: 276 GDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEM 323
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 77/175 (44%), Gaps = 2/175 (1%)
Query: 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLW 87
+V++Y T + + + +A+KF M+ P +++ +D K+ + + +L
Sbjct: 366 NVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLG 425
Query: 88 DIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 147
+ M+ +G N++ Y A++ LC+ + F +M G P+ +YN + +
Sbjct: 426 NEMLQVGVEW--NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFV 483
Query: 148 KNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI 202
K K + +E+ +P L T I L ++ E A + N + E GI
Sbjct: 484 KAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGI 538
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 81/212 (38%), Gaps = 1/212 (0%)
Query: 30 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDI 89
L Y T + + E L L MK + T+ F +D L K + V ++
Sbjct: 543 LIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFN- 601
Query: 90 MVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 149
+ F L N ++ A++ LC +N V+ F+QMV G PD Y + + K
Sbjct: 602 RISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQ 661
Query: 150 KKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASA 209
V E +M + + L + + L ++ + A ++ GI P E
Sbjct: 662 GNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLC 721
Query: 210 NVLLVGLRNLGRLSDVRRFAEEMLNRRILIYD 241
+L LG + + ++ ++L D
Sbjct: 722 ISVLKKHYELGCIDEAVELQSYLMKHQLLTSD 753
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/237 (20%), Positives = 100/237 (42%), Gaps = 7/237 (2%)
Query: 4 KEGNVVEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 62
K GN+ +A + EM++ EWN V+ Y + L +++ EA + M P
Sbjct: 414 KIGNLSDAFRLGNEMLQVGVEWN---VVTYTALIDGLCDAERMKEAEELFGKMDTAGVIP 470
Query: 63 TLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFR 122
L ++ + VK + ++L + + G G + P+L++Y + LC+ ++
Sbjct: 471 NLASYNALIHGFVKAKNMDRALELLNELKGRG--IKPDLLLYGTFIWGLCSLEKIEAAKV 528
Query: 123 FFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLL 182
++M G +SL Y + + K+ E + EM + + + T + I L
Sbjct: 529 VMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLC 588
Query: 183 DADEPEFAIEIWNYILEN-GILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRIL 238
A++ +N I + G+ A ++ GL ++ E+M+ + ++
Sbjct: 589 KNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLV 645
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 5/221 (2%)
Query: 17 EMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 74
EM E E N AY T ++ + DEA L + + P++ ++ L L
Sbjct: 294 EMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCL 353
Query: 75 VKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP 134
K+ +++++ M + PNL YN ++ +LC +D F D M G FP
Sbjct: 354 RKMGKVDEALKVFEEMKK---DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFP 410
Query: 135 DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIW 194
+ T N++ + L K++K+ E F EM P + + I L + A +++
Sbjct: 411 NVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVY 470
Query: 195 NYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235
+L++ L+ N GR D + ++M+N+
Sbjct: 471 EKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQ 511
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 112/258 (43%), Gaps = 12/258 (4%)
Query: 20 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 79
+R + + V+AY L L + +VDEALK MK ++ P L ++ +D+L +
Sbjct: 334 QRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK-KDAAPNLSTYNILIDMLCRAGK 392
Query: 80 STHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTY 139
+L D M G L PN+ N +V LC + +D F++M + PD +T+
Sbjct: 393 LDTAFELRDSMQKAG--LFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITF 450
Query: 140 NMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILE 199
+ + L K +V + + +M+ ++ + + + I + E +I+ ++
Sbjct: 451 CSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMIN 510
Query: 200 NGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRIL----IYDVTMQKLKKA-FYNE 254
P N + + G R EE+ RR + Y + + L KA F NE
Sbjct: 511 QNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANE 570
Query: 255 S----RSMRDRFDSLERR 268
+ SM+++ L+ R
Sbjct: 571 TYELFYSMKEQGCVLDTR 588
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 108/243 (44%), Gaps = 4/243 (1%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ K G V +A + EM + + P V+ Y + + L + ++DEA K +
Sbjct: 596 GFCKCGKVNKAYQLLEEMKTK-GFEPT-VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRI 653
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
+ +S+ +D K+ + + ++ G L PNL +N+++ L +++
Sbjct: 654 ELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG--LTPNLYTWNSLLDALVKAEEINEA 711
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
F M P+ +TY ++ L K +K ++ F+ EM K +P+ ++ T I+
Sbjct: 712 LVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISG 771
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240
L A A +++ NG +P A N ++ GL N R D EE R + I+
Sbjct: 772 LAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIH 831
Query: 241 DVT 243
+ T
Sbjct: 832 NKT 834
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 111/291 (38%), Gaps = 40/291 (13%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G+ KEG V A EM + + + VL Y + + + +VD A KF ++
Sbjct: 212 GFAKEGRVDSALSLLDEM-KSSSLDADIVL-YNVCIDSFGKVGKVDMAWKFFHEIEANGL 269
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P +++ + +L K N V++++ + +P YN ++ + D
Sbjct: 270 KPDEVTYTSMIGVLCKANRLDEAVEMFEHLE--KNRRVPCTYAYNTMIMGYGSAGKFDEA 327
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+ ++ G+ P + YN I CL K KV E F EM K + P I M
Sbjct: 328 YSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM-KKDAAPNLSTYNILIDM 386
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANV----------------------------- 211
L A + + A E+ + + + G+ P + N+
Sbjct: 387 LCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPD 446
Query: 212 ------LLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256
L+ GL +GR+ D + E+ML+ + L K F+N R
Sbjct: 447 EITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGR 497
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/218 (17%), Positives = 94/218 (43%), Gaps = 6/218 (2%)
Query: 36 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGF 95
++ ++ ++ E +++M+ P ++ + +N S + L+ M +G+
Sbjct: 140 VLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGY 199
Query: 96 NLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEV 155
P + ++ ++ VD+ D+M D + YN+ + K KV
Sbjct: 200 E--PTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMA 257
Query: 156 ENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVG 215
FFHE+ N +P + + I +L A+ + A+E++ ++ +N +P + N +++G
Sbjct: 258 WKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMG 317
Query: 216 LRNLGRLSDVRRFAEEMLNR----RILIYDVTMQKLKK 249
+ G+ + E + ++ Y+ + L+K
Sbjct: 318 YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRK 355
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/235 (18%), Positives = 95/235 (40%), Gaps = 4/235 (1%)
Query: 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 60
G K G V +A K + +M++ + + Y + + + ++ K + M +NC
Sbjct: 456 GLGKVGRVDDAYKVYEKMLD--SDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNC 513
Query: 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120
P L+ + +D + K + +++ + F +P+ Y+ ++ L +
Sbjct: 514 SPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRF--VPDARSYSILIHGLIKAGFANET 571
Query: 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITM 180
+ F M G D+ YN++ + K KV++ EM ++PT + + I
Sbjct: 572 YELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDG 631
Query: 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235
L D + A ++ I + L+ G +GR+ + EE++ +
Sbjct: 632 LAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQK 686
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/194 (19%), Positives = 82/194 (42%), Gaps = 2/194 (1%)
Query: 39 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLM 98
L + +++DEA M + C P F + +D L K+ ++++ M + +
Sbjct: 422 LCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM--LDSDCR 479
Query: 99 PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENF 158
N I+Y +++ N+ ++ + + M+ PD N +C+ K + +
Sbjct: 480 TNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAM 539
Query: 159 FHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRN 218
F E+ + P + + I L+ A E++ + E G + + N+++ G
Sbjct: 540 FEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCK 599
Query: 219 LGRLSDVRRFAEEM 232
G+++ + EEM
Sbjct: 600 CGKVNKAYQLLEEM 613
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 2/229 (0%)
Query: 31 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIM 90
Y F+ L V++AL ++ ++ + +++ +D L K L M
Sbjct: 396 TYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEM 455
Query: 91 VGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 150
G L N + NA++G L ++ + F +M +G P ++YN++ L K
Sbjct: 456 SKHGVEL--NSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAG 513
Query: 151 KVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASAN 210
K E F EM++N W+P + + L + + A+E+W+ L++G+ N
Sbjct: 514 KFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHN 573
Query: 211 VLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRSMR 259
+L+ GL ++G+L D M +R VT L + F+ S R
Sbjct: 574 ILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNR 622
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 4/189 (2%)
Query: 46 DEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMY 104
D+AL F R+ + C P ++ ++ L+ V+ L+ G + PNL Y
Sbjct: 95 DQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAG--VAPNLQTY 152
Query: 105 NAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK 164
N ++ + C + + F D M G PD +Y+ + L K K+ + F EM +
Sbjct: 153 NVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSE 212
Query: 165 NEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN-GILPLEASANVLLVGLRNLGRLS 223
P I L + + A+E+W+ +LE+ + P + N+++ GL GR+
Sbjct: 213 RGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVD 272
Query: 224 DVRRFAEEM 232
D + E M
Sbjct: 273 DCLKIWERM 281
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWD 88
V+ + + L ++D+A+ + M+ NC L ++ ++ K+ DS +W
Sbjct: 569 VMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWG 628
Query: 89 IMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 147
M +G L P++I YN ++ LC V FFD HG FP T+N++ ++
Sbjct: 629 YMYKMG--LQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILVRAVV 685
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 91/197 (46%), Gaps = 2/197 (1%)
Query: 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWD 88
V +Y T + L + ++D+AL+ M P + ++ +D +K D ++LWD
Sbjct: 184 VFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWD 243
Query: 89 IMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148
++ ++ PN+ +N ++ L VD+ + +++M + D TY+ + L
Sbjct: 244 RLLEDS-SVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCD 302
Query: 149 NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEAS 208
V + E+ F+E+ + + + T + + + ++E+W I+E+ S
Sbjct: 303 AGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWR-IMEHKNSVNIVS 361
Query: 209 ANVLLVGLRNLGRLSDV 225
N+L+ GL G++ +
Sbjct: 362 YNILIKGLLENGKIDEA 378
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 80/190 (42%), Gaps = 2/190 (1%)
Query: 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWD 88
V++Y + L + + EA F++ M P LK +S L L + ++LW
Sbjct: 499 VVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWH 558
Query: 89 IMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148
+ G L +++M+N ++ LC+ +D+ M + +TYN + E K
Sbjct: 559 QFLQSG--LETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFK 616
Query: 149 NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEAS 208
+ + M K QP ++ T + L +A+E ++ +GI P +
Sbjct: 617 VGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYT 676
Query: 209 ANVLLVGLRN 218
N+L+ + N
Sbjct: 677 WNILVRAVVN 686
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,492,246
Number of Sequences: 539616
Number of extensions: 4018499
Number of successful extensions: 15640
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 13237
Number of HSP's gapped (non-prelim): 1401
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)