Query 048737
Match_columns 274
No_of_seqs 424 out of 1162
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 12:34:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.2E-49 2.7E-54 348.4 32.7 264 2-269 482-784 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.3E-49 2.9E-54 348.2 32.7 265 1-269 446-714 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 4.8E-45 1E-49 315.5 25.1 251 1-266 268-521 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2E-44 4.4E-49 311.6 26.9 251 2-268 168-455 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 8.2E-43 1.8E-47 308.0 26.2 257 1-269 231-519 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.6E-42 3.5E-47 306.2 25.2 257 2-270 162-420 (857)
7 PRK11788 tetratricopeptide rep 99.9 2.4E-22 5.1E-27 163.9 29.8 256 4-268 47-311 (389)
8 PRK11788 tetratricopeptide rep 99.9 1E-20 2.2E-25 154.3 29.2 260 2-270 79-349 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 1.1E-19 2.4E-24 162.8 29.6 252 3-266 612-898 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 5.8E-19 1.3E-23 158.1 31.7 251 4-266 579-830 (899)
11 PRK15174 Vi polysaccharide exp 99.8 4.4E-17 9.4E-22 140.1 31.3 253 4-268 88-381 (656)
12 TIGR00990 3a0801s09 mitochondr 99.8 3.2E-16 6.9E-21 134.7 31.5 258 6-270 308-573 (615)
13 PRK15174 Vi polysaccharide exp 99.8 3.6E-16 7.8E-21 134.5 30.9 254 3-267 53-312 (656)
14 PF13429 TPR_15: Tetratricopep 99.8 1.8E-18 3.9E-23 134.5 11.2 258 2-270 18-279 (280)
15 TIGR00990 3a0801s09 mitochondr 99.8 5.9E-15 1.3E-19 127.0 31.5 257 2-268 137-496 (615)
16 PRK11447 cellulose synthase su 99.7 3.1E-14 6.8E-19 130.2 30.7 256 3-268 362-700 (1157)
17 KOG4626 O-linked N-acetylgluco 99.7 5.7E-15 1.2E-19 119.5 21.9 217 6-235 266-485 (966)
18 COG2956 Predicted N-acetylgluc 99.7 2.1E-13 4.5E-18 102.3 27.5 229 5-240 48-283 (389)
19 KOG4422 Uncharacterized conser 99.7 2E-14 4.2E-19 111.6 21.7 239 25-269 203-463 (625)
20 TIGR00540 hemY_coli hemY prote 99.7 4.5E-13 9.8E-18 109.6 31.0 255 4-269 96-400 (409)
21 PRK09782 bacteriophage N4 rece 99.7 1.5E-13 3.4E-18 121.6 30.1 248 8-267 454-705 (987)
22 PRK11447 cellulose synthase su 99.7 9E-14 2E-18 127.3 29.3 252 3-267 472-739 (1157)
23 KOG4626 O-linked N-acetylgluco 99.7 1.2E-14 2.6E-19 117.6 20.6 248 5-266 231-483 (966)
24 PRK10747 putative protoheme IX 99.7 8.3E-13 1.8E-17 107.6 30.8 247 5-267 97-389 (398)
25 PRK12370 invasion protein regu 99.7 2E-13 4.3E-18 115.8 27.3 248 6-267 275-534 (553)
26 PF13429 TPR_15: Tetratricopep 99.7 1.5E-15 3.3E-20 118.2 12.6 220 4-234 56-276 (280)
27 TIGR02521 type_IV_pilW type IV 99.7 4.2E-13 9.2E-18 101.4 24.8 200 29-234 31-231 (234)
28 PRK09782 bacteriophage N4 rece 99.6 1E-12 2.3E-17 116.5 30.1 218 6-236 490-707 (987)
29 PRK10049 pgaA outer membrane p 99.6 1.6E-12 3.5E-17 114.3 29.3 258 2-268 59-388 (765)
30 KOG1126 DNA-binding cell divis 99.6 6E-14 1.3E-18 114.2 18.7 245 1-257 362-607 (638)
31 KOG1126 DNA-binding cell divis 99.6 1.1E-13 2.3E-18 112.7 19.9 244 7-268 334-586 (638)
32 PRK14574 hmsH outer membrane p 99.6 3E-12 6.4E-17 111.5 29.7 254 3-267 45-395 (822)
33 TIGR02521 type_IV_pilW type IV 99.6 5.5E-13 1.2E-17 100.8 22.6 192 2-200 41-232 (234)
34 PRK10747 putative protoheme IX 99.6 4.5E-13 9.9E-18 109.1 23.1 217 5-234 166-389 (398)
35 KOG4422 Uncharacterized conser 99.6 8.2E-13 1.8E-17 102.8 22.3 234 25-263 112-380 (625)
36 PRK10049 pgaA outer membrane p 99.6 7.2E-12 1.6E-16 110.2 31.3 256 3-268 26-339 (765)
37 PRK12370 invasion protein regu 99.6 4.1E-12 8.9E-17 107.8 27.5 236 25-269 252-503 (553)
38 COG3071 HemY Uncharacterized e 99.6 3.4E-11 7.3E-16 93.0 28.3 254 5-267 97-389 (400)
39 TIGR00540 hemY_coli hemY prote 99.6 2E-12 4.3E-17 105.9 23.1 223 4-234 165-398 (409)
40 PF13041 PPR_2: PPR repeat fam 99.6 1.3E-14 2.8E-19 81.4 5.9 50 204-253 1-50 (50)
41 PF13041 PPR_2: PPR repeat fam 99.5 1.5E-14 3.3E-19 81.1 5.8 49 99-147 1-49 (50)
42 PRK14574 hmsH outer membrane p 99.5 3.3E-11 7.2E-16 105.1 29.1 259 2-268 112-445 (822)
43 KOG1155 Anaphase-promoting com 99.5 3.2E-11 7E-16 94.8 25.8 163 66-234 332-494 (559)
44 KOG1129 TPR repeat-containing 99.5 6.2E-13 1.3E-17 100.1 15.4 224 33-264 227-454 (478)
45 KOG1155 Anaphase-promoting com 99.5 6.8E-11 1.5E-15 93.0 24.8 218 5-228 275-529 (559)
46 KOG2076 RNA polymerase III tra 99.5 1.7E-10 3.7E-15 97.4 28.0 256 5-267 152-477 (895)
47 PRK11189 lipoprotein NlpI; Pro 99.5 1.4E-10 3E-15 90.8 26.1 231 5-247 39-276 (296)
48 COG2956 Predicted N-acetylgluc 99.5 3.4E-10 7.4E-15 85.3 25.5 248 2-257 79-331 (389)
49 KOG2003 TPR repeat-containing 99.5 8.6E-11 1.9E-15 92.5 23.1 219 43-270 504-724 (840)
50 COG3071 HemY Uncharacterized e 99.5 1.3E-10 2.7E-15 89.9 23.2 224 4-240 165-395 (400)
51 PF12569 NARP1: NMDA receptor- 99.4 7.8E-10 1.7E-14 91.7 27.9 261 3-271 15-337 (517)
52 KOG4318 Bicoid mRNA stability 99.4 7.5E-12 1.6E-16 105.3 15.3 224 14-256 12-286 (1088)
53 KOG1840 Kinesin light chain [C 99.4 3.2E-10 6.8E-15 93.1 24.4 246 25-270 195-481 (508)
54 KOG1129 TPR repeat-containing 99.4 4.6E-11 1E-15 90.2 17.2 224 2-235 233-458 (478)
55 COG3063 PilF Tfp pilus assembl 99.4 1.5E-09 3.2E-14 78.2 23.3 191 32-228 38-229 (250)
56 COG3063 PilF Tfp pilus assembl 99.4 5.2E-10 1.1E-14 80.5 20.4 201 1-210 44-244 (250)
57 KOG0547 Translocase of outer m 99.4 2.6E-10 5.6E-15 90.4 18.8 219 4-234 338-565 (606)
58 PRK11189 lipoprotein NlpI; Pro 99.3 9.1E-10 2E-14 86.2 21.7 196 2-211 74-275 (296)
59 KOG1840 Kinesin light chain [C 99.3 5.8E-10 1.2E-14 91.6 20.9 231 2-233 209-477 (508)
60 KOG2076 RNA polymerase III tra 99.3 8.9E-09 1.9E-13 87.4 27.1 247 6-257 221-542 (895)
61 cd05804 StaR_like StaR_like; a 99.3 1.1E-08 2.5E-13 82.5 27.4 260 3-269 54-337 (355)
62 KOG2002 TPR-containing nuclear 99.3 1.6E-09 3.4E-14 92.5 20.5 236 5-247 509-757 (1018)
63 KOG0495 HAT repeat protein [RN 99.3 3.9E-08 8.4E-13 81.1 26.8 255 2-269 526-783 (913)
64 KOG1070 rRNA processing protei 99.3 1.3E-08 2.8E-13 90.1 25.6 232 14-257 1446-1687(1710)
65 KOG0495 HAT repeat protein [RN 99.2 4.3E-08 9.3E-13 80.9 26.2 252 3-265 595-877 (913)
66 KOG1173 Anaphase-promoting com 99.2 6.4E-09 1.4E-13 84.1 21.2 222 25-254 308-535 (611)
67 KOG1173 Anaphase-promoting com 99.2 9.8E-09 2.1E-13 83.0 22.0 253 4-266 256-516 (611)
68 KOG2003 TPR repeat-containing 99.2 3.9E-09 8.5E-14 83.4 19.3 207 4-221 502-709 (840)
69 PF12569 NARP1: NMDA receptor- 99.2 3.2E-08 7E-13 82.3 23.6 227 2-234 48-333 (517)
70 KOG1915 Cell cycle control pro 99.2 7.6E-08 1.6E-12 76.7 24.3 251 5-268 86-351 (677)
71 KOG2002 TPR-containing nuclear 99.2 9.7E-08 2.1E-12 82.0 25.9 259 3-268 210-481 (1018)
72 PF04733 Coatomer_E: Coatomer 99.2 8.5E-09 1.8E-13 79.9 17.7 243 5-268 14-265 (290)
73 KOG1915 Cell cycle control pro 99.2 2.7E-07 5.9E-12 73.6 25.9 257 5-269 154-537 (677)
74 PLN02789 farnesyltranstransfer 99.1 1.3E-07 2.8E-12 74.4 23.9 205 4-218 49-267 (320)
75 KOG0547 Translocase of outer m 99.1 5.3E-08 1.1E-12 77.7 21.5 226 37-270 334-568 (606)
76 cd05804 StaR_like StaR_like; a 99.1 3.1E-07 6.8E-12 74.2 26.6 92 106-198 119-213 (355)
77 COG5010 TadD Flp pilus assembl 99.1 6.6E-08 1.4E-12 71.2 18.8 160 68-233 70-229 (257)
78 KOG1174 Anaphase-promoting com 99.1 1.7E-07 3.6E-12 73.5 21.9 252 5-268 209-500 (564)
79 KOG4318 Bicoid mRNA stability 99.1 5.6E-09 1.2E-13 88.5 14.6 187 50-250 11-248 (1088)
80 KOG1125 TPR repeat-containing 99.1 1.1E-07 2.4E-12 77.3 21.0 246 2-257 295-558 (579)
81 PRK10370 formate-dependent nit 99.1 2.4E-08 5.2E-13 73.2 16.1 127 42-174 52-181 (198)
82 COG5010 TadD Flp pilus assembl 99.0 2.6E-08 5.6E-13 73.3 14.3 170 23-199 61-230 (257)
83 PF12854 PPR_1: PPR repeat 99.0 5E-10 1.1E-14 56.6 3.8 31 132-162 3-33 (34)
84 TIGR03302 OM_YfiO outer membra 99.0 2.1E-07 4.5E-12 70.7 19.9 184 28-235 32-232 (235)
85 PRK14720 transcript cleavage f 99.0 2.9E-07 6.4E-12 80.5 22.7 220 22-252 24-268 (906)
86 TIGR03302 OM_YfiO outer membra 99.0 2.4E-07 5.3E-12 70.3 19.8 185 62-269 31-233 (235)
87 PF04733 Coatomer_E: Coatomer 99.0 4.6E-08 9.9E-13 75.9 15.3 212 5-235 48-265 (290)
88 PF12854 PPR_1: PPR repeat 99.0 7.1E-10 1.5E-14 56.0 3.4 32 201-232 2-33 (34)
89 PRK15359 type III secretion sy 99.0 1.1E-07 2.3E-12 66.2 15.4 108 13-130 14-121 (144)
90 PLN02789 farnesyltranstransfer 99.0 3.3E-06 7.2E-11 66.5 25.4 219 28-254 36-268 (320)
91 KOG3060 Uncharacterized conser 98.9 3.3E-06 7.1E-11 62.2 21.9 190 6-201 26-221 (289)
92 TIGR02552 LcrH_SycD type III s 98.9 1.2E-07 2.5E-12 65.4 13.9 102 25-130 13-114 (135)
93 PRK10370 formate-dependent nit 98.9 2.7E-07 5.8E-12 67.7 16.1 161 36-215 23-186 (198)
94 KOG1070 rRNA processing protei 98.9 2.8E-06 6E-11 76.0 23.8 217 4-228 1470-1693(1710)
95 KOG1174 Anaphase-promoting com 98.8 1.8E-06 3.9E-11 67.9 19.3 223 2-236 242-501 (564)
96 PRK15179 Vi polysaccharide bio 98.8 8.2E-07 1.8E-11 76.8 18.9 135 25-165 82-217 (694)
97 KOG1128 Uncharacterized conser 98.8 2.7E-07 5.9E-12 77.1 15.0 205 4-234 410-615 (777)
98 COG4783 Putative Zn-dependent 98.8 7.3E-07 1.6E-11 71.4 16.8 150 28-200 305-454 (484)
99 KOG1156 N-terminal acetyltrans 98.8 6.2E-06 1.3E-10 68.4 22.3 237 5-252 20-263 (700)
100 COG4783 Putative Zn-dependent 98.8 2.1E-05 4.5E-10 63.3 24.2 136 76-235 318-454 (484)
101 PRK15359 type III secretion sy 98.8 5.1E-07 1.1E-11 62.8 13.8 92 69-164 29-120 (144)
102 PRK15179 Vi polysaccharide bio 98.8 3.8E-06 8.2E-11 72.8 21.4 148 60-213 82-229 (694)
103 KOG1156 N-terminal acetyltrans 98.7 2.5E-05 5.4E-10 64.9 23.8 133 133-270 366-513 (700)
104 TIGR02552 LcrH_SycD type III s 98.7 1.5E-06 3.3E-11 59.8 14.8 96 65-164 18-113 (135)
105 KOG1128 Uncharacterized conser 98.7 5.6E-07 1.2E-11 75.3 14.4 181 2-199 434-615 (777)
106 KOG2376 Signal recognition par 98.7 4.4E-05 9.6E-10 62.9 24.4 263 3-273 23-451 (652)
107 KOG4340 Uncharacterized conser 98.7 1.2E-05 2.5E-10 60.9 19.5 247 3-257 21-326 (459)
108 KOG2053 Mitochondrial inherita 98.7 5.7E-05 1.2E-09 65.1 25.3 223 4-237 21-257 (932)
109 KOG1125 TPR repeat-containing 98.7 1.1E-05 2.4E-10 66.0 20.1 221 36-265 292-524 (579)
110 PRK14720 transcript cleavage f 98.7 7.8E-06 1.7E-10 71.9 20.5 202 3-217 42-268 (906)
111 PRK04841 transcriptional regul 98.7 4E-05 8.6E-10 69.9 25.3 268 3-270 463-762 (903)
112 KOG3081 Vesicle coat complex C 98.6 8.4E-05 1.8E-09 55.4 21.7 145 102-257 109-257 (299)
113 PF10037 MRP-S27: Mitochondria 98.6 1.1E-06 2.5E-11 71.0 12.5 120 135-254 65-186 (429)
114 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.3E-06 2.9E-11 70.2 12.9 124 31-163 171-295 (395)
115 KOG2047 mRNA splicing factor [ 98.6 0.00013 2.9E-09 60.9 23.7 133 101-234 387-539 (835)
116 KOG3081 Vesicle coat complex C 98.6 1.7E-05 3.8E-10 58.9 16.7 194 29-235 72-271 (299)
117 PF09976 TPR_21: Tetratricopep 98.6 8.5E-06 1.8E-10 56.8 14.7 19 74-92 58-76 (145)
118 TIGR00756 PPR pentatricopeptid 98.6 1.6E-07 3.4E-12 48.0 4.5 31 139-169 3-33 (35)
119 KOG4162 Predicted calmodulin-b 98.6 0.0002 4.4E-09 60.9 24.6 253 7-268 459-783 (799)
120 KOG0624 dsRNA-activated protei 98.6 0.00017 3.6E-09 55.9 23.8 225 2-236 116-371 (504)
121 KOG3060 Uncharacterized conser 98.6 0.00012 2.6E-09 54.2 21.4 190 41-236 24-221 (289)
122 KOG2047 mRNA splicing factor [ 98.6 0.00029 6.4E-09 58.9 24.8 260 5-269 360-652 (835)
123 TIGR00756 PPR pentatricopeptid 98.6 1.3E-07 2.8E-12 48.3 3.9 34 103-136 2-35 (35)
124 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 5.3E-06 1.1E-10 66.8 14.4 127 63-198 168-295 (395)
125 PF08579 RPM2: Mitochondrial r 98.5 1.7E-06 3.6E-11 55.6 9.1 79 176-254 30-117 (120)
126 KOG3785 Uncharacterized conser 98.5 9.1E-06 2E-10 62.9 14.8 213 9-235 271-490 (557)
127 PF10037 MRP-S27: Mitochondria 98.5 3.4E-06 7.4E-11 68.3 13.0 125 59-183 61-185 (429)
128 PF09976 TPR_21: Tetratricopep 98.5 5.7E-06 1.2E-10 57.7 12.5 117 4-127 23-144 (145)
129 PRK04841 transcriptional regul 98.5 0.00039 8.4E-09 63.6 27.3 266 4-269 421-721 (903)
130 PF13812 PPR_3: Pentatricopept 98.5 2.4E-07 5.1E-12 47.0 3.8 32 103-134 3-34 (34)
131 KOG3785 Uncharacterized conser 98.5 0.00015 3.2E-09 56.5 20.2 89 176-268 398-490 (557)
132 PF13812 PPR_3: Pentatricopept 98.5 3.9E-07 8.5E-12 46.1 4.2 32 138-169 3-34 (34)
133 KOG0624 dsRNA-activated protei 98.4 0.00044 9.5E-09 53.7 23.1 156 74-235 165-336 (504)
134 KOG2376 Signal recognition par 98.4 0.00019 4.1E-09 59.3 19.4 195 33-236 16-254 (652)
135 cd00189 TPR Tetratricopeptide 98.4 1.2E-05 2.5E-10 51.1 10.4 92 33-128 4-95 (100)
136 PF08579 RPM2: Mitochondrial r 98.4 9.7E-06 2.1E-10 52.1 9.4 78 69-148 30-116 (120)
137 TIGR02795 tol_pal_ybgF tol-pal 98.4 3.7E-05 8.1E-10 51.4 13.1 22 35-56 8-29 (119)
138 PRK02603 photosystem I assembl 98.4 5.3E-05 1.1E-09 54.5 14.6 96 25-123 31-128 (172)
139 KOG4340 Uncharacterized conser 98.3 5.4E-05 1.2E-09 57.4 14.2 195 31-238 12-210 (459)
140 KOG1914 mRNA cleavage and poly 98.3 0.00032 6.9E-09 57.5 19.3 185 45-234 309-500 (656)
141 KOG4162 Predicted calmodulin-b 98.3 0.00031 6.7E-09 59.8 19.9 228 2-235 488-783 (799)
142 KOG2053 Mitochondrial inherita 98.3 0.00045 9.7E-09 59.9 21.1 192 3-202 54-257 (932)
143 TIGR02795 tol_pal_ybgF tol-pal 98.3 4.4E-05 9.4E-10 51.1 12.7 102 65-166 3-106 (119)
144 KOG0548 Molecular co-chaperone 98.3 0.0012 2.7E-08 54.0 21.9 84 3-91 13-97 (539)
145 PF05843 Suf: Suppressor of fo 98.3 7.5E-05 1.6E-09 58.1 15.0 145 30-181 2-150 (280)
146 cd00189 TPR Tetratricopeptide 98.3 2.6E-05 5.5E-10 49.4 10.7 92 68-163 4-95 (100)
147 PLN03088 SGT1, suppressor of 98.3 2.2E-05 4.7E-10 63.3 12.3 88 3-94 13-100 (356)
148 PRK15363 pathogenicity island 98.3 3.4E-05 7.3E-10 53.3 11.4 91 70-164 41-131 (157)
149 PF05843 Suf: Suppressor of fo 98.3 3.2E-05 7E-10 60.1 12.6 131 65-200 2-136 (280)
150 PF01535 PPR: PPR repeat; Int 98.2 1.5E-06 3.2E-11 42.9 3.2 28 103-130 2-29 (31)
151 PLN03088 SGT1, suppressor of 98.2 6.4E-05 1.4E-09 60.6 14.1 104 35-144 8-111 (356)
152 PF01535 PPR: PPR repeat; Int 98.2 2E-06 4.3E-11 42.4 3.4 29 138-166 2-30 (31)
153 PF06239 ECSIT: Evolutionarily 98.2 2.4E-05 5.3E-10 56.7 9.9 106 133-257 44-154 (228)
154 PF12895 Apc3: Anaphase-promot 98.2 5.8E-06 1.3E-10 51.7 5.9 80 5-89 2-83 (84)
155 CHL00033 ycf3 photosystem I as 98.2 9.6E-05 2.1E-09 52.9 12.9 81 29-112 35-117 (168)
156 PRK15363 pathogenicity island 98.2 2.7E-05 5.9E-10 53.8 9.4 101 26-130 32-132 (157)
157 KOG3617 WD40 and TPR repeat-co 98.2 0.00047 1E-08 59.5 18.2 197 2-230 738-962 (1416)
158 PF14559 TPR_19: Tetratricopep 98.2 5.8E-06 1.3E-10 49.4 5.4 63 3-70 2-64 (68)
159 PF12895 Apc3: Anaphase-promot 98.2 4.2E-06 9.2E-11 52.3 5.0 82 77-161 2-83 (84)
160 PRK10866 outer membrane biogen 98.2 0.00055 1.2E-08 52.0 17.0 184 28-233 31-239 (243)
161 KOG1914 mRNA cleavage and poly 98.1 0.0013 2.8E-08 54.1 19.0 183 81-267 310-500 (656)
162 CHL00033 ycf3 photosystem I as 98.1 0.00016 3.5E-09 51.8 12.8 83 64-147 35-117 (168)
163 KOG0548 Molecular co-chaperone 98.1 0.0032 6.9E-08 51.8 20.6 213 32-253 227-471 (539)
164 COG4235 Cytochrome c biogenesi 98.1 0.00025 5.4E-09 54.1 13.5 102 25-130 152-256 (287)
165 PF14938 SNAP: Soluble NSF att 98.1 0.0029 6.3E-08 49.4 20.1 198 29-232 35-260 (282)
166 KOG1127 TPR repeat-containing 98.1 0.00099 2.1E-08 58.6 18.3 180 8-198 474-657 (1238)
167 KOG0553 TPR repeat-containing 98.1 7.7E-05 1.7E-09 56.6 10.4 87 39-129 91-177 (304)
168 PRK10153 DNA-binding transcrip 98.1 0.0002 4.4E-09 60.4 13.9 144 25-175 333-490 (517)
169 KOG0985 Vesicle coat protein c 98.1 0.0024 5.2E-08 56.6 20.2 158 66-255 1106-1263(1666)
170 PF12688 TPR_5: Tetratrico pep 98.0 0.00064 1.4E-08 45.3 13.4 106 34-146 6-116 (120)
171 KOG1127 TPR repeat-containing 98.0 0.00088 1.9E-08 58.9 17.3 183 44-234 473-658 (1238)
172 KOG0985 Vesicle coat protein c 98.0 0.0035 7.5E-08 55.7 20.7 219 6-255 1089-1327(1666)
173 PF13432 TPR_16: Tetratricopep 98.0 1.5E-05 3.2E-10 47.1 5.0 51 4-57 9-59 (65)
174 PRK02603 photosystem I assembl 98.0 0.00099 2.1E-08 47.9 15.1 90 64-156 35-126 (172)
175 PRK10153 DNA-binding transcrip 98.0 0.0015 3.2E-08 55.3 17.8 138 59-201 332-483 (517)
176 PF06239 ECSIT: Evolutionarily 98.0 0.00014 3E-09 52.9 9.7 103 28-151 46-153 (228)
177 KOG0553 TPR repeat-containing 97.9 0.00023 4.9E-09 54.1 10.9 103 72-181 89-192 (304)
178 PRK10866 outer membrane biogen 97.9 0.0047 1E-07 47.0 19.3 179 63-263 31-236 (243)
179 KOG3616 Selective LIM binding 97.9 0.002 4.3E-08 55.2 16.8 106 112-230 743-848 (1636)
180 PF14559 TPR_19: Tetratricopep 97.9 8E-05 1.7E-09 44.3 6.2 51 76-129 3-53 (68)
181 KOG3616 Selective LIM binding 97.9 0.0019 4.2E-08 55.3 16.1 111 35-160 738-848 (1636)
182 COG4700 Uncharacterized protei 97.8 0.0045 9.8E-08 44.0 16.1 128 61-192 86-214 (251)
183 PF13432 TPR_16: Tetratricopep 97.8 0.00013 2.9E-09 42.9 6.7 50 75-127 8-57 (65)
184 PF13414 TPR_11: TPR repeat; P 97.8 0.00018 3.9E-09 42.9 7.1 24 69-92 8-31 (69)
185 PF13525 YfiO: Outer membrane 97.8 0.0022 4.8E-08 47.4 14.2 63 31-93 7-71 (203)
186 PF03704 BTAD: Bacterial trans 97.8 0.0012 2.5E-08 46.1 11.9 70 103-173 64-138 (146)
187 COG4235 Cytochrome c biogenesi 97.8 0.0046 9.9E-08 47.4 15.5 102 98-201 153-257 (287)
188 PF12688 TPR_5: Tetratrico pep 97.8 0.0044 9.5E-08 41.4 13.8 53 111-163 11-65 (120)
189 PF14938 SNAP: Soluble NSF att 97.7 0.0047 1E-07 48.3 15.3 193 44-254 30-248 (282)
190 PF13414 TPR_11: TPR repeat; P 97.7 0.00021 4.5E-09 42.6 6.1 65 28-93 2-67 (69)
191 PF03704 BTAD: Bacterial trans 97.7 0.002 4.4E-08 44.9 11.8 71 173-244 64-139 (146)
192 KOG2796 Uncharacterized conser 97.7 0.004 8.6E-08 46.8 13.4 132 67-201 180-316 (366)
193 KOG2796 Uncharacterized conser 97.7 0.0054 1.2E-07 46.1 14.0 141 31-176 179-324 (366)
194 PRK11906 transcriptional regul 97.6 0.0079 1.7E-07 49.1 15.6 148 7-161 273-432 (458)
195 KOG3617 WD40 and TPR repeat-co 97.6 0.016 3.6E-07 50.6 18.0 28 243-270 1147-1176(1416)
196 PRK10803 tol-pal system protei 97.6 0.0026 5.7E-08 48.9 12.3 101 65-165 144-246 (263)
197 PRK15331 chaperone protein Sic 97.6 0.0037 8E-08 43.7 11.8 103 23-129 31-133 (165)
198 PF13281 DUF4071: Domain of un 97.6 0.028 6.1E-07 45.2 19.3 172 63-236 140-335 (374)
199 PF13371 TPR_9: Tetratricopept 97.5 0.0005 1.1E-08 41.5 6.3 54 2-58 5-58 (73)
200 COG4700 Uncharacterized protei 97.5 0.017 3.7E-07 41.2 18.0 132 98-231 86-218 (251)
201 KOG0550 Molecular chaperone (D 97.5 0.02 4.3E-07 45.9 15.8 222 3-234 60-315 (486)
202 PRK10803 tol-pal system protei 97.5 0.0057 1.2E-07 47.0 12.6 86 112-199 154-245 (263)
203 PF12921 ATP13: Mitochondrial 97.4 0.0042 9.1E-08 41.9 10.3 49 97-145 48-97 (126)
204 PF12921 ATP13: Mitochondrial 97.4 0.0036 7.8E-08 42.2 9.9 50 132-181 48-98 (126)
205 PF13371 TPR_9: Tetratricopept 97.4 0.0016 3.5E-08 39.2 7.3 52 75-129 6-57 (73)
206 PF13424 TPR_12: Tetratricopep 97.3 0.00078 1.7E-08 41.3 5.4 64 28-91 4-73 (78)
207 PRK15331 chaperone protein Sic 97.3 0.018 4E-07 40.3 12.3 87 74-164 47-133 (165)
208 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.01 2.3E-07 48.4 12.7 68 24-93 70-141 (453)
209 PF13525 YfiO: Outer membrane 97.3 0.04 8.6E-07 40.8 19.8 172 67-257 8-194 (203)
210 PF08631 SPO22: Meiosis protei 97.2 0.063 1.4E-06 41.9 23.6 225 3-232 4-272 (278)
211 PF04840 Vps16_C: Vps16, C-ter 97.2 0.076 1.6E-06 42.2 20.6 109 103-231 179-287 (319)
212 PF10300 DUF3808: Protein of u 97.2 0.11 2.4E-06 43.8 18.3 164 31-199 190-375 (468)
213 KOG4555 TPR repeat-containing 97.2 0.01 2.2E-07 39.7 9.4 90 2-94 53-145 (175)
214 KOG3941 Intermediate in Toll s 97.1 0.01 2.2E-07 45.2 10.2 111 133-262 64-179 (406)
215 COG3118 Thioredoxin domain-con 97.1 0.078 1.7E-06 40.8 15.0 154 35-194 140-295 (304)
216 PF13424 TPR_12: Tetratricopep 97.1 0.0036 7.9E-08 38.2 6.8 64 65-128 6-73 (78)
217 KOG2041 WD40 repeat protein [G 97.1 0.047 1E-06 46.9 15.0 69 6-88 748-820 (1189)
218 KOG0543 FKBP-type peptidyl-pro 97.1 0.014 3E-07 46.7 11.2 123 2-128 218-353 (397)
219 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.046 1E-06 44.8 14.1 64 63-130 74-141 (453)
220 PF13281 DUF4071: Domain of un 97.0 0.13 2.9E-06 41.4 19.4 165 33-201 145-335 (374)
221 PF04053 Coatomer_WDAD: Coatom 97.0 0.042 9.2E-07 45.7 13.5 56 100-164 346-401 (443)
222 COG3898 Uncharacterized membra 96.9 0.15 3.3E-06 40.9 21.8 213 41-265 166-389 (531)
223 COG4105 ComL DNA uptake lipopr 96.9 0.11 2.5E-06 39.1 18.7 64 31-94 36-101 (254)
224 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.13 2.8E-06 42.1 15.0 129 31-164 399-530 (660)
225 KOG2610 Uncharacterized conser 96.9 0.076 1.6E-06 41.7 13.2 153 5-163 116-274 (491)
226 COG1729 Uncharacterized protei 96.7 0.031 6.8E-07 42.4 9.8 99 31-130 144-244 (262)
227 COG1729 Uncharacterized protei 96.6 0.058 1.3E-06 41.0 10.8 101 64-165 142-244 (262)
228 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.37 7.9E-06 39.6 18.7 145 101-251 397-545 (660)
229 PF04840 Vps16_C: Vps16, C-ter 96.5 0.33 7.2E-06 38.6 17.5 109 66-196 179-287 (319)
230 KOG2610 Uncharacterized conser 96.4 0.17 3.6E-06 39.9 12.4 155 41-197 115-273 (491)
231 PF13431 TPR_17: Tetratricopep 96.4 0.0037 8E-08 31.3 2.4 32 15-49 2-33 (34)
232 KOG0543 FKBP-type peptidyl-pro 96.4 0.12 2.5E-06 41.6 11.6 125 72-199 216-354 (397)
233 PF04184 ST7: ST7 protein; In 96.4 0.41 8.8E-06 39.9 14.8 61 104-164 262-323 (539)
234 KOG1130 Predicted G-alpha GTPa 96.4 0.14 3.1E-06 41.4 12.0 265 2-268 27-344 (639)
235 KOG3941 Intermediate in Toll s 96.4 0.036 7.8E-07 42.3 8.3 87 28-116 66-173 (406)
236 PF10300 DUF3808: Protein of u 96.3 0.12 2.7E-06 43.5 12.4 131 31-164 231-375 (468)
237 PF13170 DUF4003: Protein of u 96.3 0.37 8E-06 37.9 17.0 131 80-214 78-225 (297)
238 PF13512 TPR_18: Tetratricopep 96.3 0.086 1.9E-06 36.1 9.4 62 32-94 13-77 (142)
239 PF04053 Coatomer_WDAD: Coatom 96.3 0.2 4.2E-06 41.9 13.3 158 36-231 268-427 (443)
240 COG4649 Uncharacterized protei 96.3 0.23 5E-06 35.2 13.1 52 113-164 144-195 (221)
241 PF13170 DUF4003: Protein of u 96.3 0.4 8.7E-06 37.7 18.0 139 45-185 78-231 (297)
242 smart00299 CLH Clathrin heavy 96.3 0.21 4.6E-06 34.4 15.5 125 105-252 11-136 (140)
243 KOG0550 Molecular chaperone (D 96.2 0.51 1.1E-05 38.3 17.5 155 4-165 181-350 (486)
244 KOG1941 Acetylcholine receptor 96.2 0.29 6.3E-06 39.0 12.6 228 4-232 18-272 (518)
245 PF13428 TPR_14: Tetratricopep 96.2 0.0059 1.3E-07 32.6 2.6 40 30-70 2-41 (44)
246 COG3898 Uncharacterized membra 96.1 0.57 1.2E-05 37.8 25.7 236 5-257 97-345 (531)
247 COG3629 DnrI DNA-binding trans 96.1 0.11 2.3E-06 40.2 9.9 79 101-180 153-236 (280)
248 smart00299 CLH Clathrin heavy 96.1 0.27 5.7E-06 33.9 15.6 44 33-77 11-54 (140)
249 KOG1538 Uncharacterized conser 96.1 0.68 1.5E-05 39.9 15.0 119 107-236 709-847 (1081)
250 PF13428 TPR_14: Tetratricopep 96.1 0.022 4.8E-07 30.3 4.5 27 67-93 4-30 (44)
251 COG0457 NrfG FOG: TPR repeat [ 96.0 0.41 8.9E-06 35.3 24.3 201 30-235 60-265 (291)
252 COG4105 ComL DNA uptake lipopr 96.0 0.48 1.1E-05 35.9 19.3 170 62-235 33-233 (254)
253 PF04184 ST7: ST7 protein; In 95.9 0.83 1.8E-05 38.1 19.3 220 34-272 173-418 (539)
254 PRK11906 transcriptional regul 95.8 0.89 1.9E-05 37.7 15.6 130 30-164 252-400 (458)
255 KOG2114 Vacuolar assembly/sort 95.8 0.81 1.7E-05 40.6 14.7 176 33-233 338-517 (933)
256 KOG1130 Predicted G-alpha GTPa 95.8 0.091 2E-06 42.4 8.6 229 37-266 25-302 (639)
257 PF10602 RPN7: 26S proteasome 95.8 0.46 1E-05 34.3 11.9 64 29-92 36-101 (177)
258 PF10602 RPN7: 26S proteasome 95.8 0.23 5.1E-06 35.8 10.1 62 103-164 38-101 (177)
259 KOG4555 TPR repeat-containing 95.8 0.33 7.1E-06 32.7 9.8 91 73-166 52-145 (175)
260 COG3629 DnrI DNA-binding trans 95.7 0.21 4.6E-06 38.6 10.0 60 138-198 155-214 (280)
261 PF09205 DUF1955: Domain of un 95.2 0.57 1.2E-05 31.7 12.2 67 100-167 85-151 (161)
262 PF13176 TPR_7: Tetratricopept 95.2 0.049 1.1E-06 27.5 3.6 23 32-54 2-24 (36)
263 PF07035 Mic1: Colon cancer-as 95.1 0.81 1.7E-05 32.5 14.6 100 122-232 15-115 (167)
264 PF13176 TPR_7: Tetratricopept 95.1 0.059 1.3E-06 27.2 3.7 23 104-126 2-24 (36)
265 COG3118 Thioredoxin domain-con 95.0 1.2 2.7E-05 34.5 17.2 51 75-128 145-195 (304)
266 COG4785 NlpI Lipoprotein NlpI, 95.0 1.1 2.3E-05 33.3 17.2 33 25-57 95-127 (297)
267 COG1747 Uncharacterized N-term 95.0 1.9 4.1E-05 36.3 20.3 180 25-215 62-248 (711)
268 PF09613 HrpB1_HrpK: Bacterial 95.0 0.83 1.8E-05 32.1 11.9 113 35-157 16-130 (160)
269 KOG1550 Extracellular protein 94.9 2.4 5.2E-05 36.9 16.4 182 7-202 227-428 (552)
270 KOG4570 Uncharacterized conser 94.9 0.83 1.8E-05 35.8 10.7 103 97-201 60-165 (418)
271 PF13431 TPR_17: Tetratricopep 94.8 0.036 7.8E-07 27.6 2.5 24 98-121 10-33 (34)
272 PF07035 Mic1: Colon cancer-as 94.8 0.98 2.1E-05 32.1 15.3 135 49-199 14-148 (167)
273 KOG1585 Protein required for f 94.8 1.3 2.9E-05 33.5 14.1 195 29-229 31-250 (308)
274 KOG2114 Vacuolar assembly/sort 94.8 1.8 3.9E-05 38.6 13.6 143 35-197 374-516 (933)
275 TIGR02561 HrpB1_HrpK type III 94.7 0.85 1.8E-05 31.5 9.5 52 39-94 20-74 (153)
276 PF13512 TPR_18: Tetratricopep 94.7 0.9 1.9E-05 31.3 11.5 77 72-148 18-94 (142)
277 PF13929 mRNA_stabil: mRNA sta 94.6 1.6 3.5E-05 33.9 16.5 137 115-251 142-288 (292)
278 KOG4570 Uncharacterized conser 94.5 0.81 1.8E-05 35.8 10.0 131 34-166 24-165 (418)
279 KOG1585 Protein required for f 94.3 1.8 3.8E-05 32.8 16.6 82 174-255 153-242 (308)
280 PF09205 DUF1955: Domain of un 94.0 1.3 2.8E-05 30.1 14.4 66 172-238 87-152 (161)
281 PF11207 DUF2989: Protein of u 93.9 0.86 1.9E-05 33.3 8.7 82 39-121 116-198 (203)
282 cd00923 Cyt_c_Oxidase_Va Cytoc 93.9 0.69 1.5E-05 29.3 7.0 45 47-91 25-69 (103)
283 KOG0276 Vesicle coat complex C 93.8 1.4 3E-05 37.8 10.7 98 75-195 648-745 (794)
284 KOG1550 Extracellular protein 93.8 4.2 9.1E-05 35.4 17.5 184 45-238 228-429 (552)
285 cd00923 Cyt_c_Oxidase_Va Cytoc 93.7 0.68 1.5E-05 29.3 6.8 45 82-128 25-69 (103)
286 COG4649 Uncharacterized protei 93.6 1.9 4E-05 30.8 13.2 138 101-239 59-200 (221)
287 PF00515 TPR_1: Tetratricopept 93.6 0.22 4.7E-06 24.5 3.9 26 104-129 4-29 (34)
288 COG4455 ImpE Protein of avirul 93.4 0.82 1.8E-05 33.9 7.9 77 33-110 5-81 (273)
289 PF02259 FAT: FAT domain; Int 93.4 3.5 7.5E-05 33.3 15.0 65 170-234 145-212 (352)
290 PF11207 DUF2989: Protein of u 93.4 2.2 4.7E-05 31.3 9.9 78 75-156 118-198 (203)
291 PF02284 COX5A: Cytochrome c o 93.4 0.76 1.6E-05 29.4 6.7 46 48-93 29-74 (108)
292 PF06552 TOM20_plant: Plant sp 93.3 1.2 2.7E-05 31.9 8.5 109 8-131 7-137 (186)
293 KOG1538 Uncharacterized conser 93.3 5.1 0.00011 35.0 14.9 211 35-267 604-845 (1081)
294 PF00515 TPR_1: Tetratricopept 93.3 0.2 4.3E-06 24.6 3.5 27 31-57 3-29 (34)
295 PF00637 Clathrin: Region in C 93.2 0.052 1.1E-06 37.6 1.6 82 108-196 14-95 (143)
296 KOG4648 Uncharacterized conser 93.2 0.5 1.1E-05 37.4 6.9 87 2-92 107-193 (536)
297 PF08631 SPO22: Meiosis protei 92.9 3.6 7.9E-05 32.2 24.8 166 39-207 3-193 (278)
298 PF02284 COX5A: Cytochrome c o 92.9 1.6 3.5E-05 28.0 9.3 60 82-144 28-87 (108)
299 PRK15180 Vi polysaccharide bio 92.6 3.6 7.9E-05 34.5 11.2 117 6-130 303-420 (831)
300 PF07719 TPR_2: Tetratricopept 92.5 0.38 8.3E-06 23.4 3.9 24 105-128 5-28 (34)
301 PF07719 TPR_2: Tetratricopept 92.5 0.3 6.4E-06 23.8 3.5 27 31-57 3-29 (34)
302 PF13929 mRNA_stabil: mRNA sta 92.3 4.4 9.5E-05 31.6 15.5 120 97-216 160-288 (292)
303 KOG4234 TPR repeat-containing 92.2 2.9 6.2E-05 30.7 9.1 87 74-164 105-196 (271)
304 PF07163 Pex26: Pex26 protein; 92.2 2.7 6E-05 32.4 9.4 89 34-124 88-181 (309)
305 PF13374 TPR_10: Tetratricopep 92.1 0.36 7.9E-06 24.8 3.7 27 30-56 3-29 (42)
306 PRK15180 Vi polysaccharide bio 92.1 6.4 0.00014 33.1 13.2 123 74-202 299-422 (831)
307 PF09613 HrpB1_HrpK: Bacterial 92.1 3.1 6.7E-05 29.3 13.2 117 102-227 8-130 (160)
308 COG4785 NlpI Lipoprotein NlpI, 91.9 4.1 8.8E-05 30.4 16.1 182 43-237 79-268 (297)
309 PRK09687 putative lyase; Provi 91.8 5.2 0.00011 31.4 23.8 215 28-266 36-261 (280)
310 KOG0687 26S proteasome regulat 91.8 5.5 0.00012 31.6 11.7 16 79-94 37-52 (393)
311 PF13374 TPR_10: Tetratricopep 91.7 0.51 1.1E-05 24.2 4.0 25 103-127 4-28 (42)
312 KOG2280 Vacuolar assembly/sort 91.6 9.3 0.0002 33.9 15.1 109 103-230 686-794 (829)
313 PF00637 Clathrin: Region in C 91.6 0.099 2.1E-06 36.2 1.3 53 71-125 14-66 (143)
314 KOG2280 Vacuolar assembly/sort 90.9 11 0.00024 33.5 17.1 64 29-92 507-574 (829)
315 COG2976 Uncharacterized protei 90.9 4.9 0.00011 29.3 13.0 89 108-201 96-189 (207)
316 PF07079 DUF1347: Protein of u 90.8 8.8 0.00019 32.1 22.8 141 3-148 17-179 (549)
317 PHA02875 ankyrin repeat protei 90.7 5.2 0.00011 33.3 10.9 202 12-242 15-231 (413)
318 TIGR03504 FimV_Cterm FimV C-te 90.5 0.78 1.7E-05 24.4 3.8 24 212-235 5-28 (44)
319 KOG0276 Vesicle coat complex C 90.3 4.5 9.8E-05 34.9 9.8 101 38-161 646-746 (794)
320 COG0457 NrfG FOG: TPR repeat [ 90.2 5.7 0.00012 29.0 28.3 220 42-267 36-264 (291)
321 KOG4648 Uncharacterized conser 90.0 3.4 7.4E-05 33.0 8.3 93 36-135 104-197 (536)
322 COG4455 ImpE Protein of avirul 89.7 6.2 0.00013 29.5 9.0 76 104-180 4-81 (273)
323 PF08424 NRDE-2: NRDE-2, neces 89.5 9.6 0.00021 30.6 16.8 139 25-167 15-185 (321)
324 PF07079 DUF1347: Protein of u 89.3 12 0.00026 31.3 21.0 206 28-247 297-531 (549)
325 PF13181 TPR_8: Tetratricopept 89.1 1.4 2.9E-05 21.4 4.0 27 103-129 3-29 (34)
326 PF06552 TOM20_plant: Plant sp 88.7 5.9 0.00013 28.5 8.1 74 118-201 52-137 (186)
327 PF13181 TPR_8: Tetratricopept 88.7 1.2 2.7E-05 21.6 3.7 27 31-57 3-29 (34)
328 PF07721 TPR_4: Tetratricopept 88.6 0.73 1.6E-05 21.1 2.6 22 32-53 4-25 (26)
329 TIGR02561 HrpB1_HrpK type III 88.5 6.5 0.00014 27.4 12.3 64 101-166 7-74 (153)
330 KOG1941 Acetylcholine receptor 88.5 12 0.00026 30.4 15.9 231 39-269 16-276 (518)
331 PF13174 TPR_6: Tetratricopept 88.4 0.93 2E-05 21.7 3.1 22 108-129 7-28 (33)
332 TIGR03504 FimV_Cterm FimV C-te 88.1 2.2 4.7E-05 22.7 4.4 24 177-200 5-28 (44)
333 COG5187 RPN7 26S proteasome re 88.1 11 0.00024 29.5 10.3 27 136-162 115-141 (412)
334 PF10579 Rapsyn_N: Rapsyn N-te 88.0 2.2 4.7E-05 25.9 4.8 46 113-158 18-65 (80)
335 COG2976 Uncharacterized protei 88.0 8.6 0.00019 28.1 12.3 134 29-166 54-189 (207)
336 PF14689 SPOB_a: Sensor_kinase 87.8 2.3 4.9E-05 24.6 4.8 47 7-57 5-51 (62)
337 PF07163 Pex26: Pex26 protein; 87.5 9.3 0.0002 29.7 9.0 91 104-194 86-181 (309)
338 KOG2063 Vacuolar assembly/sort 87.3 24 0.00052 32.5 13.6 39 216-254 694-745 (877)
339 PHA02875 ankyrin repeat protei 87.2 15 0.00033 30.5 11.4 26 176-205 204-229 (413)
340 KOG1920 IkappaB kinase complex 87.0 28 0.0006 33.0 18.0 174 36-232 858-1052(1265)
341 PRK10564 maltose regulon perip 87.0 1.8 3.8E-05 33.9 5.1 45 24-68 252-296 (303)
342 PF02259 FAT: FAT domain; Int 86.6 15 0.00033 29.6 20.1 65 135-199 145-212 (352)
343 PF10579 Rapsyn_N: Rapsyn N-te 86.6 2.1 4.5E-05 26.0 4.2 46 41-86 18-65 (80)
344 smart00386 HAT HAT (Half-A-TPR 86.4 2.4 5.2E-05 20.0 4.0 29 6-37 1-29 (33)
345 COG3947 Response regulator con 85.6 16 0.00034 28.7 14.6 59 138-197 281-339 (361)
346 KOG4077 Cytochrome c oxidase, 85.5 9 0.00019 25.8 7.1 46 83-130 68-113 (149)
347 COG0735 Fur Fe2+/Zn2+ uptake r 84.2 12 0.00025 26.1 8.2 59 161-220 11-69 (145)
348 KOG4642 Chaperone-dependent E3 84.2 16 0.00035 27.8 11.1 120 3-127 21-143 (284)
349 KOG4077 Cytochrome c oxidase, 83.4 9.3 0.0002 25.8 6.4 46 154-199 67-112 (149)
350 TIGR02508 type_III_yscG type I 83.4 9.7 0.00021 24.5 8.0 49 111-165 49-97 (115)
351 PF13762 MNE1: Mitochondrial s 83.2 13 0.00028 25.8 13.5 93 127-219 28-128 (145)
352 COG5159 RPN6 26S proteasome re 83.1 21 0.00045 28.1 11.2 126 107-232 9-151 (421)
353 PF11663 Toxin_YhaV: Toxin wit 83.0 2 4.3E-05 29.1 3.3 31 218-250 107-137 (140)
354 cd00280 TRFH Telomeric Repeat 82.9 16 0.00034 26.6 7.9 21 37-57 119-139 (200)
355 PF11848 DUF3368: Domain of un 82.8 5.4 0.00012 21.6 4.5 34 39-72 12-45 (48)
356 PF11848 DUF3368: Domain of un 82.5 5.9 0.00013 21.4 4.9 31 218-248 14-44 (48)
357 COG1747 Uncharacterized N-term 82.3 31 0.00067 29.6 22.7 180 60-249 62-247 (711)
358 PF10345 Cohesin_load: Cohesin 81.2 39 0.00085 30.0 18.9 150 102-252 60-234 (608)
359 smart00028 TPR Tetratricopepti 80.5 3.1 6.7E-05 18.9 3.0 27 31-57 3-29 (34)
360 KOG4234 TPR repeat-containing 80.1 22 0.00047 26.4 12.6 55 180-235 143-197 (271)
361 PF10345 Cohesin_load: Cohesin 80.0 43 0.00093 29.8 18.7 189 9-198 38-252 (608)
362 PF11846 DUF3366: Domain of un 79.9 11 0.00024 27.6 6.8 30 204-233 142-171 (193)
363 KOG2908 26S proteasome regulat 79.7 29 0.00064 27.9 9.0 70 103-172 77-156 (380)
364 COG0735 Fur Fe2+/Zn2+ uptake r 79.6 18 0.00039 25.1 7.7 39 55-94 12-50 (145)
365 KOG0890 Protein kinase of the 79.1 84 0.0018 32.6 14.5 153 69-229 1388-1541(2382)
366 PF09477 Type_III_YscG: Bacter 79.1 15 0.00033 24.0 8.8 13 81-93 23-35 (116)
367 KOG1258 mRNA processing protei 78.9 43 0.00094 29.1 22.5 187 63-255 296-489 (577)
368 PF08424 NRDE-2: NRDE-2, neces 78.8 32 0.0007 27.6 16.5 138 61-202 16-185 (321)
369 PF14561 TPR_20: Tetratricopep 78.5 14 0.0003 23.2 8.9 55 25-79 18-73 (90)
370 PF08311 Mad3_BUB1_I: Mad3/BUB 78.5 11 0.00025 25.4 6.0 44 47-90 81-125 (126)
371 KOG1308 Hsp70-interacting prot 78.2 1.7 3.8E-05 34.5 2.1 85 5-94 127-212 (377)
372 PF11663 Toxin_YhaV: Toxin wit 78.1 3.6 7.8E-05 27.9 3.3 32 112-145 106-137 (140)
373 PF14689 SPOB_a: Sensor_kinase 77.8 10 0.00023 21.8 4.9 22 106-127 28-49 (62)
374 PF11846 DUF3366: Domain of un 77.7 13 0.00029 27.1 6.6 33 167-199 140-172 (193)
375 KOG4507 Uncharacterized conser 77.6 40 0.00087 29.5 9.8 87 76-165 619-705 (886)
376 KOG0686 COP9 signalosome, subu 77.3 40 0.00087 27.9 14.3 177 65-249 151-352 (466)
377 PF11123 DNA_Packaging_2: DNA 77.1 11 0.00025 22.4 4.7 34 7-43 12-45 (82)
378 TIGR02508 type_III_yscG type I 76.9 17 0.00037 23.4 8.5 51 38-94 48-98 (115)
379 cd00280 TRFH Telomeric Repeat 76.8 26 0.00057 25.5 7.8 21 179-199 119-139 (200)
380 PRK10564 maltose regulon perip 76.8 5.5 0.00012 31.2 4.4 42 204-245 254-296 (303)
381 PF04097 Nic96: Nup93/Nic96; 76.4 56 0.0012 29.1 14.8 63 29-93 112-181 (613)
382 smart00777 Mad3_BUB1_I Mad3/BU 76.2 21 0.00046 24.1 6.8 44 81-126 80-124 (125)
383 COG5108 RPO41 Mitochondrial DN 76.1 33 0.00071 30.5 9.0 75 34-113 33-115 (1117)
384 KOG4507 Uncharacterized conser 75.7 49 0.0011 29.0 9.8 148 61-214 568-718 (886)
385 KOG2908 26S proteasome regulat 75.3 42 0.0009 27.1 9.8 93 69-164 80-182 (380)
386 COG0790 FOG: TPR repeat, SEL1 75.2 38 0.00082 26.6 22.9 85 154-245 173-276 (292)
387 COG0790 FOG: TPR repeat, SEL1 75.0 38 0.00083 26.5 20.7 16 79-94 128-143 (292)
388 PF11838 ERAP1_C: ERAP1-like C 74.8 41 0.00089 26.8 16.0 112 80-195 146-261 (324)
389 COG5108 RPO41 Mitochondrial DN 74.5 28 0.00062 30.8 8.3 48 141-188 33-82 (1117)
390 PF07575 Nucleopor_Nup85: Nup8 74.0 26 0.00057 30.7 8.5 32 218-249 507-538 (566)
391 KOG2063 Vacuolar assembly/sort 73.9 50 0.0011 30.6 10.1 118 137-254 505-639 (877)
392 cd08819 CARD_MDA5_2 Caspase ac 73.7 19 0.00041 22.5 6.5 14 185-198 50-63 (88)
393 KOG0376 Serine-threonine phosp 72.8 8.4 0.00018 32.2 4.8 102 3-113 15-117 (476)
394 PRK14700 recombination factor 72.7 46 0.001 26.4 9.4 90 69-160 128-225 (300)
395 PHA03100 ankyrin repeat protei 72.2 61 0.0013 27.6 12.2 12 123-134 158-169 (480)
396 PF10475 DUF2450: Protein of u 72.0 47 0.001 26.3 13.1 87 103-194 129-220 (291)
397 PRK11639 zinc uptake transcrip 71.8 34 0.00074 24.5 8.2 64 161-225 16-79 (169)
398 COG3947 Response regulator con 71.5 49 0.0011 26.2 16.0 147 81-233 150-340 (361)
399 PF12862 Apc5: Anaphase-promot 71.5 21 0.00046 22.5 5.6 23 35-57 47-69 (94)
400 cd07153 Fur_like Ferric uptake 71.1 21 0.00044 23.5 5.8 49 176-224 5-53 (116)
401 PF01475 FUR: Ferric uptake re 70.9 18 0.00038 24.1 5.4 45 211-255 12-56 (120)
402 PRK11619 lytic murein transgly 70.7 80 0.0017 28.4 21.4 181 7-195 256-463 (644)
403 PF09454 Vps23_core: Vps23 cor 70.6 16 0.00034 21.4 4.4 46 207-253 9-54 (65)
404 PHA03100 ankyrin repeat protei 70.4 67 0.0014 27.4 10.1 144 35-194 38-196 (480)
405 PF12862 Apc5: Anaphase-promot 70.0 25 0.00053 22.2 5.9 23 142-164 47-69 (94)
406 PF11817 Foie-gras_1: Foie gra 69.8 41 0.00088 25.8 7.8 60 138-197 180-244 (247)
407 PF09670 Cas_Cas02710: CRISPR- 69.4 64 0.0014 26.7 9.7 53 111-164 141-197 (379)
408 PF11817 Foie-gras_1: Foie gra 69.1 45 0.00097 25.6 7.9 79 47-128 163-245 (247)
409 KOG2062 26S proteasome regulat 69.1 90 0.002 28.3 12.7 246 2-255 69-336 (929)
410 KOG0686 COP9 signalosome, subu 69.0 66 0.0014 26.8 15.0 97 29-127 150-255 (466)
411 PF10366 Vps39_1: Vacuolar sor 68.6 30 0.00065 22.6 8.1 27 208-234 41-67 (108)
412 PF09454 Vps23_core: Vps23 cor 68.3 22 0.00047 20.8 5.1 52 167-219 4-55 (65)
413 KOG4521 Nuclear pore complex, 68.1 1.2E+02 0.0026 29.3 14.5 154 1-159 929-1125(1480)
414 PRK09462 fur ferric uptake reg 67.5 39 0.00084 23.5 8.1 64 160-224 6-70 (148)
415 PF13762 MNE1: Mitochondrial s 67.1 40 0.00087 23.5 11.9 95 55-149 28-128 (145)
416 PF07575 Nucleopor_Nup85: Nup8 67.1 26 0.00056 30.8 6.9 30 183-212 507-536 (566)
417 KOG1258 mRNA processing protei 67.0 88 0.0019 27.4 26.7 50 5-57 92-142 (577)
418 PF07064 RIC1: RIC1; InterPro 66.9 58 0.0013 25.3 15.1 155 30-199 83-248 (258)
419 KOG4567 GTPase-activating prot 66.7 43 0.00094 26.6 7.1 45 156-200 263-307 (370)
420 COG5159 RPN6 26S proteasome re 66.4 63 0.0014 25.5 17.5 161 34-194 8-188 (421)
421 COG2909 MalT ATP-dependent tra 66.2 1.1E+02 0.0024 28.3 18.1 197 39-235 425-647 (894)
422 KOG4642 Chaperone-dependent E3 66.1 58 0.0013 25.0 11.2 118 38-161 19-142 (284)
423 smart00777 Mad3_BUB1_I Mad3/BU 65.6 19 0.00041 24.3 4.6 75 8-89 49-124 (125)
424 KOG3807 Predicted membrane pro 65.4 72 0.0016 25.8 9.5 56 73-129 284-339 (556)
425 KOG0376 Serine-threonine phosp 65.3 23 0.00049 29.8 5.8 107 35-148 10-117 (476)
426 KOG1920 IkappaB kinase complex 65.2 1.3E+02 0.0029 28.9 20.3 190 30-234 791-1027(1265)
427 KOG2041 WD40 repeat protein [G 64.5 1.1E+02 0.0024 27.7 20.0 208 30-252 797-1068(1189)
428 KOG1114 Tripeptidyl peptidase 64.3 1.3E+02 0.0028 28.3 13.6 81 152-233 1212-1293(1304)
429 COG2178 Predicted RNA-binding 64.3 55 0.0012 24.1 9.2 17 218-234 133-149 (204)
430 KOG1586 Protein required for f 63.3 66 0.0014 24.7 18.2 87 115-201 128-225 (288)
431 KOG1839 Uncharacterized protei 62.8 1.5E+02 0.0033 28.7 11.3 133 25-157 969-1120(1236)
432 KOG1464 COP9 signalosome, subu 62.8 73 0.0016 25.0 13.9 123 42-164 40-173 (440)
433 PF10366 Vps39_1: Vacuolar sor 62.3 41 0.0009 22.0 8.2 27 103-129 41-67 (108)
434 PRK09857 putative transposase; 62.3 77 0.0017 25.2 8.1 66 174-240 209-274 (292)
435 KOG2396 HAT (Half-A-TPR) repea 62.2 1E+02 0.0022 26.5 19.0 96 134-232 457-556 (568)
436 KOG4814 Uncharacterized conser 62.0 75 0.0016 28.2 8.3 87 38-128 363-455 (872)
437 PF02847 MA3: MA3 domain; Int 61.2 43 0.00093 21.8 7.4 61 140-202 6-68 (113)
438 PF03745 DUF309: Domain of unk 61.0 30 0.00065 19.9 5.9 48 39-86 9-61 (62)
439 PF09670 Cas_Cas02710: CRISPR- 60.6 97 0.0021 25.7 10.8 57 36-93 138-198 (379)
440 KOG3636 Uncharacterized conser 59.9 1.1E+02 0.0023 25.9 10.1 89 57-148 176-272 (669)
441 KOG2659 LisH motif-containing 59.4 75 0.0016 24.0 9.8 95 28-126 25-128 (228)
442 KOG1308 Hsp70-interacting prot 59.1 9.1 0.0002 30.7 2.5 93 40-137 125-218 (377)
443 PF02847 MA3: MA3 domain; Int 58.7 48 0.001 21.6 6.2 24 105-128 6-29 (113)
444 PF14853 Fis1_TPR_C: Fis1 C-te 58.4 30 0.00066 19.2 5.3 30 35-66 7-36 (53)
445 cd07153 Fur_like Ferric uptake 57.8 43 0.00094 21.9 5.4 36 115-150 14-49 (116)
446 COG2178 Predicted RNA-binding 57.7 74 0.0016 23.4 8.1 99 100-199 28-149 (204)
447 KOG4567 GTPase-activating prot 57.3 59 0.0013 26.0 6.4 59 191-254 263-321 (370)
448 PF04090 RNA_pol_I_TF: RNA pol 57.3 77 0.0017 23.5 7.2 50 66-118 43-93 (199)
449 PRK11639 zinc uptake transcrip 57.0 70 0.0015 22.9 8.0 56 57-115 19-74 (169)
450 PF11838 ERAP1_C: ERAP1-like C 56.8 99 0.0021 24.6 18.2 96 152-252 146-246 (324)
451 PF02184 HAT: HAT (Half-A-TPR) 56.5 23 0.00051 17.3 3.2 21 117-139 3-23 (32)
452 PRK09857 putative transposase; 56.1 1E+02 0.0022 24.5 10.8 57 113-170 218-274 (292)
453 PF01475 FUR: Ferric uptake re 55.9 40 0.00086 22.4 4.9 44 107-150 13-56 (120)
454 PHA00425 DNA packaging protein 55.6 44 0.00094 20.3 4.3 54 7-74 14-67 (88)
455 COG5191 Uncharacterized conser 54.5 39 0.00086 27.0 5.1 78 25-106 103-181 (435)
456 smart00638 LPD_N Lipoprotein N 54.5 1.5E+02 0.0033 26.1 21.1 218 45-270 291-524 (574)
457 KOG3677 RNA polymerase I-assoc 54.3 92 0.002 26.1 7.3 62 67-128 238-299 (525)
458 PF14669 Asp_Glu_race_2: Putat 53.8 88 0.0019 23.1 13.3 56 176-231 137-206 (233)
459 PF09477 Type_III_YscG: Bacter 53.5 62 0.0013 21.3 8.6 81 42-131 19-99 (116)
460 PRK09687 putative lyase; Provi 53.2 1.1E+02 0.0024 24.1 25.8 206 28-253 67-279 (280)
461 COG4976 Predicted methyltransf 53.1 61 0.0013 24.7 5.7 53 3-58 6-58 (287)
462 PF10963 DUF2765: Protein of u 53.0 46 0.001 20.6 4.3 33 23-56 11-43 (83)
463 KOG0687 26S proteasome regulat 52.6 1.2E+02 0.0027 24.5 15.7 134 60-199 66-209 (393)
464 PF15297 CKAP2_C: Cytoskeleton 52.1 1.3E+02 0.0028 24.5 8.5 64 152-217 119-186 (353)
465 PF10475 DUF2450: Protein of u 52.1 1.2E+02 0.0026 24.1 9.2 112 105-227 102-218 (291)
466 cd08819 CARD_MDA5_2 Caspase ac 52.0 57 0.0012 20.4 6.8 11 117-127 52-62 (88)
467 COG2909 MalT ATP-dependent tra 51.9 2E+02 0.0044 26.7 17.1 222 4-231 427-684 (894)
468 KOG2297 Predicted translation 51.8 1.2E+02 0.0027 24.3 14.2 33 23-57 161-195 (412)
469 PF14929 TAF1_subA: TAF RNA Po 51.5 1.7E+02 0.0037 25.7 16.5 15 169-183 409-423 (547)
470 PF04910 Tcf25: Transcriptiona 51.4 1.4E+02 0.003 24.6 16.4 124 4-129 6-167 (360)
471 COG2256 MGS1 ATPase related to 51.1 1.5E+02 0.0032 24.9 13.6 151 46-199 192-352 (436)
472 PRK09462 fur ferric uptake reg 50.8 82 0.0018 21.9 7.8 15 80-94 33-47 (148)
473 TIGR02710 CRISPR-associated pr 50.8 1.4E+02 0.0031 24.7 8.6 123 2-129 140-274 (380)
474 PF08311 Mad3_BUB1_I: Mad3/BUB 50.0 78 0.0017 21.4 9.2 43 119-161 81-124 (126)
475 KOG2066 Vacuolar assembly/sort 49.7 2.1E+02 0.0046 26.3 11.7 168 36-234 363-533 (846)
476 PF02607 B12-binding_2: B12 bi 49.6 55 0.0012 19.6 4.6 38 218-255 13-50 (79)
477 PRK10941 hypothetical protein; 49.0 1.3E+02 0.0028 23.6 10.4 59 68-129 185-243 (269)
478 PRK10304 ferritin; Provisional 48.3 99 0.0021 22.1 7.6 106 151-265 50-157 (165)
479 PHA02798 ankyrin-like protein; 48.1 1.6E+02 0.0034 25.4 8.5 155 49-205 51-213 (489)
480 KOG3364 Membrane protein invol 47.9 92 0.002 21.6 9.7 68 98-165 29-100 (149)
481 cd08332 CARD_CASP2 Caspase act 46.6 68 0.0015 20.2 4.6 59 11-79 22-80 (90)
482 PF14649 Spatacsin_C: Spatacsi 46.3 1.5E+02 0.0032 23.7 7.3 82 155-236 4-89 (296)
483 PRK10941 hypothetical protein; 46.0 1.4E+02 0.0031 23.3 10.1 80 102-182 182-262 (269)
484 KOG0403 Neoplastic transformat 45.5 1.9E+02 0.004 24.7 7.8 95 139-238 512-614 (645)
485 PF04910 Tcf25: Transcriptiona 45.3 1.7E+02 0.0038 24.1 18.8 30 98-127 37-66 (360)
486 KOG2471 TPR repeat-containing 45.1 1.6E+02 0.0035 25.5 7.5 141 1-147 215-380 (696)
487 KOG1464 COP9 signalosome, subu 45.1 1.5E+02 0.0033 23.3 21.2 190 5-194 40-254 (440)
488 PF12796 Ank_2: Ankyrin repeat 45.0 70 0.0015 19.4 4.9 55 177-240 29-86 (89)
489 PF05944 Phage_term_smal: Phag 43.6 1.1E+02 0.0023 21.1 5.6 30 173-202 50-79 (132)
490 KOG3824 Huntingtin interacting 43.3 49 0.0011 26.4 4.1 51 4-57 128-178 (472)
491 PRK13341 recombination factor 43.1 2.7E+02 0.0059 25.6 16.7 30 60-91 193-222 (725)
492 PF04090 RNA_pol_I_TF: RNA pol 42.9 1.4E+02 0.003 22.2 7.3 61 101-162 41-102 (199)
493 KOG4521 Nuclear pore complex, 42.8 3.3E+02 0.0072 26.6 14.6 91 35-125 926-1045(1480)
494 COG2405 Predicted nucleic acid 41.9 81 0.0017 21.8 4.5 33 217-249 120-152 (157)
495 TIGR01987 HI0074 nucleotidyltr 41.5 1.1E+02 0.0024 20.6 9.4 80 6-91 3-85 (123)
496 cd08812 CARD_RIG-I_like Caspas 41.4 47 0.001 20.8 3.2 49 31-83 36-85 (88)
497 KOG3636 Uncharacterized conser 41.1 2.3E+02 0.0049 24.2 14.4 89 165-254 177-273 (669)
498 TIGR03581 EF_0839 conserved hy 40.9 1.3E+02 0.0029 22.6 5.8 35 44-78 136-177 (236)
499 PHA02874 ankyrin repeat protei 40.9 2.2E+02 0.0048 24.0 8.9 105 122-238 105-215 (434)
500 PRK08691 DNA polymerase III su 40.8 2.9E+02 0.0062 25.3 10.6 94 151-247 179-286 (709)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-49 Score=348.39 Aligned_cols=264 Identities=16% Similarity=0.150 Sum_probs=140.6
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|++.|++++|.++|++|.+. |+.| |..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+++
T Consensus 482 y~k~G~vd~A~~vf~eM~~~-Gv~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~d 559 (1060)
T PLN03218 482 CAKSGKVDAMFEVFHEMVNA-GVEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 45555555555555555553 5555 555555555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHh--cCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 048737 82 HTVQLWDIMVG--IGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFF 159 (274)
Q Consensus 82 ~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 159 (274)
+|.++|++|.. .| +.||..+|++++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|
T Consensus 560 eA~~lf~eM~~~~~g--i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf 637 (1060)
T PLN03218 560 RAFDVLAEMKAETHP--IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637 (1060)
T ss_pred HHHHHHHHHHHhcCC--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 55555555543 23 445555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhCC-----------------------------------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 048737 160 HEMIKNE-----------------------------------WQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILP 204 (274)
Q Consensus 160 ~~~~~~~-----------------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 204 (274)
++|.+.| +.||..+|++||.+|++.|++++|.++|++|.+.|+.|
T Consensus 638 ~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P 717 (1060)
T PLN03218 638 DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 5554444 44455555555555555555555555555555555555
Q ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHHh
Q 048737 205 LEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 205 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 269 (274)
|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|+. |.++|++|.+.+
T Consensus 718 dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 55555555555555555555555555555555555555555555555555544 555555554443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-49 Score=348.21 Aligned_cols=265 Identities=15% Similarity=0.226 Sum_probs=255.0
Q ss_pred CcccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh
Q 048737 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 80 (274)
Q Consensus 1 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (274)
+|++.|+++.|.++|++|.+. |+.| |..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~-Gl~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEA-GLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 578999999999999999995 9999 89999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHh--cCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 048737 81 THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF--HGAFPDSLTYNMIFECLIKNKKVHEVENF 158 (274)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 158 (274)
++|.++|++|.+.| +.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++
T Consensus 524 eeAl~lf~~M~~~G--v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 524 AKAFGAYGIMRSKN--VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred HHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999 999999999999999999999999999999976 67899999999999999999999999999
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 048737 159 FHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRIL 238 (274)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 238 (274)
|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcChh--HHHHHHHHHHHh
Q 048737 239 IYDVTMQKLKKAFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 269 (274)
||..+|++||.+|++.|+. |.++|++|.+.+
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999988 999999887643
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.8e-45 Score=315.51 Aligned_cols=251 Identities=17% Similarity=0.174 Sum_probs=234.4
Q ss_pred CcccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh
Q 048737 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 80 (274)
Q Consensus 1 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (274)
+|++.|++++|.++|++|..+ |+.+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 268 ~y~k~g~~~~A~~vf~~m~~~------~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 268 MYSKCGDIEDARCVFDGMPEK------TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCCC------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence 478999999999999999654 88999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 048737 81 THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFH 160 (274)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (274)
+.|.+++..|.+.| ++||..+|+.|+++|++.|++++|.++|++|.+ ||..+||.||.+|++.|+.++|.++|+
T Consensus 342 ~~a~~i~~~m~~~g--~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 342 EHAKQAHAGLIRTG--FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred HHHHHHHHHHHHhC--CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999 899999999999999999999999999999964 799999999999999999999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCcc
Q 048737 161 EMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILE-NGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILI 239 (274)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 239 (274)
+|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p 492 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKP 492 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCC
Confidence 999999999999999999999999999999999999986 699999999999999999999999999998765 5678
Q ss_pred CHHHHHHHHHHHHhcChh--HHHHHHHHH
Q 048737 240 YDVTMQKLKKAFYNESRS--MRDRFDSLE 266 (274)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~--a~~~~~~~~ 266 (274)
+..+|++|+.+|...|+. |+.+++++.
T Consensus 493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 493 TVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 999999999998888877 666666554
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-44 Score=311.62 Aligned_cols=251 Identities=16% Similarity=0.204 Sum_probs=208.0
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHH----------------
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK---------------- 65 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------- 65 (274)
|++.|++++|.++|++|.+ | |..+|+.++.+|++.|++++|+++|++|.+.|+.|+..
T Consensus 168 y~k~g~~~~A~~lf~~m~~-----~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE-----R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC-----C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 6677777777777777754 3 66777777777777777777777777776666555544
Q ss_pred -------------------HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHH
Q 048737 66 -------------------FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQ 126 (274)
Q Consensus 66 -------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 126 (274)
+|+.|+.+|++.|++++|.++|+.|. ++|..+||+++.+|++.|++++|.++|++
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP------EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC------CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45666777777888888888887773 46788888888888888888888888888
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccH
Q 048737 127 MVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLE 206 (274)
Q Consensus 127 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 206 (274)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888753 778
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHH
Q 048737 207 ASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLERR 268 (274)
Q Consensus 207 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 268 (274)
.+||.+|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.. |.++|+.|.+.
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999988 99999988764
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.2e-43 Score=308.02 Aligned_cols=257 Identities=13% Similarity=0.184 Sum_probs=215.2
Q ss_pred CcccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh
Q 048737 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 80 (274)
Q Consensus 1 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (274)
+|++.|++++|.++|++|..+ |..+||++|.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|++.|++
T Consensus 231 ~y~k~g~~~~A~~lf~~m~~~------d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 231 MYVKCGDVVSARLVFDRMPRR------DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHhcCCCHHHHHHHHhcCCCC------CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 478889999999999988654 77889999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 048737 81 THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFH 160 (274)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (274)
+.+.+++..+.+.| +.||..+||.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|+
T Consensus 305 ~~a~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 305 RLGREMHGYVVKTG--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred HHHHHHHHHHHHhC--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999988 88999999999999999999999999998885 3788889999999999999999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhC-----
Q 048737 161 EMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR----- 235 (274)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----- 235 (274)
+|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+.
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~ 458 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISW 458 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeH
Confidence 988888888888888888888888888888888888888888888888888888877777777777777766542
Q ss_pred -------------------------CCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHHh
Q 048737 236 -------------------------RILIYDVTMQKLKKAFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 236 -------------------------~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 269 (274)
++.||..||++++.+|++.|.. +++++..+++.+
T Consensus 459 ~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 459 TSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 3566666676666666666666 666666666554
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-42 Score=306.20 Aligned_cols=257 Identities=14% Similarity=0.079 Sum_probs=158.2
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|++.|++++|+++|++|... |+.| |..+|+.++.+|+..++++.+.+++..|.+.|+.||..+++.|+.+|++.|+++
T Consensus 162 ~~~~g~~~~A~~~f~~M~~~-g~~P-d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 239 (857)
T PLN03077 162 YAKAGYFDEALCLYHRMLWA-GVRP-DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHc-CCCC-ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHH
Confidence 34444444444444444442 4444 344444444443333333333333333333334444444455555555555555
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHE 161 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (274)
.|.++|++|. .||..+||+++.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+++.|.+++..
T Consensus 240 ~A~~lf~~m~------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 313 (857)
T PLN03077 240 SARLVFDRMP------RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313 (857)
T ss_pred HHHHHHhcCC------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 5555555553 3455666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCH
Q 048737 162 MIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYD 241 (274)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 241 (274)
|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.||.
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~ 389 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc
Confidence 6666666666666666677777777777777666664 256667777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 242 VTMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 242 ~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
.||++++.+|++.|+. |.++++.+.+.+.
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 420 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGL 420 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence 7777777777777776 7777777766643
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=2.4e-22 Score=163.88 Aligned_cols=256 Identities=13% Similarity=0.067 Sum_probs=155.9
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhCCCh
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT---LKFFSNALDILVKLNDS 80 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 80 (274)
..|++++|...|.++.+. .|++..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 47 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKV---DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred hcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 457777777777777654 666666777777777777777777777777766432221 24556667777777777
Q ss_pred hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCCHhHHH
Q 048737 81 THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS----LTYNMIFECLIKNKKVHEVE 156 (274)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~ 156 (274)
+.|..+|+++.+.. +++..+++.++.++.+.|++++|.+.++.+.+.+..++. ..+..+...+...|++++|.
T Consensus 124 ~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 124 DRAEELFLQLVDEG---DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHcCC---cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 77777777777653 445666777777777777777777777776654432211 13344555566666666666
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 048737 157 NFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 236 (274)
..++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......+++.+..+|...|++++|...++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 6666665532 22234555555666666666666666666665432222344555666666666666666666665554
Q ss_pred CccCHHHHHHHHHHHHhcChh--HHHHHHHHHHH
Q 048737 237 ILIYDVTMQKLKKAFYNESRS--MRDRFDSLERR 268 (274)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 268 (274)
.|+...+..+...+.+.|+. |..+++++++.
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 24444445555566666655 55555555443
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1e-20 Score=154.28 Aligned_cols=260 Identities=11% Similarity=0.044 Sum_probs=213.4
Q ss_pred cccccchHHHHHHHHHHHhccCCCCc--hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 79 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (274)
|.+.|++++|..+++.+... +..++ ....+..++..|.+.|++++|..+|+++.+.. +++..++..++..+.+.|+
T Consensus 79 ~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~ 156 (389)
T PRK11788 79 FRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKD 156 (389)
T ss_pred HHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhch
Confidence 46789999999999998774 22221 13568889999999999999999999998753 4567889999999999999
Q ss_pred hhhHHHHHHHHHhcCCccCcc----HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHH
Q 048737 80 STHTVQLWDIMVGIGFNLMPN----LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEV 155 (274)
Q Consensus 80 ~~~a~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 155 (274)
+++|.+.++.+.+.+ ..++ ...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|
T Consensus 157 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 233 (389)
T PRK11788 157 WQKAIDVAERLEKLG--GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAA 233 (389)
T ss_pred HHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999865 2221 2245677888999999999999999998753 23466888899999999999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 156 ENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
.++++++.+.+......++..++.+|...|++++|...++++.+.. |+...+..+...+.+.|++++|..+++++.+.
T Consensus 234 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 234 IEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999875422224568889999999999999999999998864 66667788999999999999999999999876
Q ss_pred CCccCHHHHHHHHHHHHh---cChh--HHHHHHHHHHHhh
Q 048737 236 RILIYDVTMQKLKKAFYN---ESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~---~g~~--a~~~~~~~~~~~~ 270 (274)
.|+..++..++..+.. .|+. +..++++++++.-
T Consensus 312 --~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 312 --HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred --CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 6899999988887774 3344 7788888887654
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=1.1e-19 Score=162.81 Aligned_cols=252 Identities=12% Similarity=0.088 Sum_probs=137.5
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhh
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (274)
.+.|++++|...|+++.+. .|.++..+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|+++.
T Consensus 612 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 687 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLAL---QPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTES 687 (899)
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3445555666665555443 44445555555555555555555555555555432 2234444444455555555555
Q ss_pred HHHHHHHHHhcCCccCccHHhHHH---------------------------------HHHHHHhcCChhhHHHHHHHHHh
Q 048737 83 TVQLWDIMVGIGFNLMPNLIMYNA---------------------------------VVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~---------------------------------l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
|.++++.+.+.. +++...+.. +..++.+.|++++|.+.++++.+
T Consensus 688 A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 688 AKKIAKSLQKQH---PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHhhC---cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555444443 333444444 44445555555555555554444
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHH
Q 048737 130 HGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASA 209 (274)
Q Consensus 130 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 209 (274)
.. +.+...+..+...|...|++++|...|+++.+.. +++...+..+...+...|+ .+|...+++..+... -+..++
T Consensus 765 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~ 840 (899)
T TIGR02917 765 TH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAIL 840 (899)
T ss_pred hC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHH
Confidence 32 2234455555555555555555555555555433 2344455555555555555 445555555554321 233445
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHH
Q 048737 210 NVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLE 266 (274)
Q Consensus 210 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~ 266 (274)
..+...+...|++++|..+++++.+.+.. +..++..+..++.+.|+. |.+++++++
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55666677777777777777777776543 677777777777777777 777776664
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=5.8e-19 Score=158.15 Aligned_cols=251 Identities=9% Similarity=0.060 Sum_probs=137.8
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhH
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (274)
+.|++++|.++++.+... .|.+...|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|
T Consensus 579 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 654 (899)
T TIGR02917 579 GKGQLKKALAILNEAADA---APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKA 654 (899)
T ss_pred HCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 445555555555555443 34445555555555555555555555555555432 23344555555555555666666
Q ss_pred HHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
..+|+++.+.. +.+..++..+...+...|++++|..+++.+...+ +++...+..+...+...|++++|...|+.+.
T Consensus 655 ~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 655 ITSLKRALELK---PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66665555543 3445555555666666666666666666555543 2344555556666666666666666666665
Q ss_pred hCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHH
Q 048737 164 KNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVT 243 (274)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 243 (274)
..+ |+..++..+..++.+.|++++|...++++.+.. +.+...+..+...|...|++++|..+|+++.+.. +++...
T Consensus 731 ~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 806 (899)
T TIGR02917 731 KRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVV 806 (899)
T ss_pred hhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHH
Confidence 532 444555555666666666666666666655543 2445555666666666666666666666665543 234445
Q ss_pred HHHHHHHHHhcChh-HHHHHHHHH
Q 048737 244 MQKLKKAFYNESRS-MRDRFDSLE 266 (274)
Q Consensus 244 ~~~l~~~~~~~g~~-a~~~~~~~~ 266 (274)
+..+...+...|+. |...+++++
T Consensus 807 ~~~l~~~~~~~~~~~A~~~~~~~~ 830 (899)
T TIGR02917 807 LNNLAWLYLELKDPRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHH
Confidence 55555555554443 444444433
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=4.4e-17 Score=140.06 Aligned_cols=253 Identities=10% Similarity=0.022 Sum_probs=132.0
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhH
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (274)
..|++++|++.|+++... .|++..++..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|
T Consensus 88 ~~g~~~~A~~~l~~~l~~---~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAV---NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred hcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHH
Confidence 456677777777766554 66666666666666667777777777776666531 23345555666666666666666
Q ss_pred HHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-----------------------------
Q 048737 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP----------------------------- 134 (274)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------------------- 134 (274)
...++.+.... +.+...+..+ ..+.+.|++++|...++.+.+....+
T Consensus 164 ~~~~~~~~~~~---P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al 239 (656)
T PRK15174 164 ISLARTQAQEV---PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL 239 (656)
T ss_pred HHHHHHHHHhC---CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666555433 1222222222 12444455555555544444332112
Q ss_pred -----ChhhHHHHHHHHHhcCCHhH----HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcc
Q 048737 135 -----DSLTYNMIFECLIKNKKVHE----VENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPL 205 (274)
Q Consensus 135 -----~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 205 (274)
+...+..+...+...|++++ |...+++..+.. +.+...+..+...+...|++++|...+++..+... .+
T Consensus 240 ~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~ 317 (656)
T PRK15174 240 ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DL 317 (656)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence 23344444445555555543 455555554422 12233455555555556666666666665555432 23
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCH-HHHHHHHHHHHhcChh--HHHHHHHHHHH
Q 048737 206 EASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYD-VTMQKLKKAFYNESRS--MRDRFDSLERR 268 (274)
Q Consensus 206 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 268 (274)
...+..+..++.+.|++++|...++.+.+. .|+. ..+..+..++...|+. |.+.++.+++.
T Consensus 318 ~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 318 PYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344455555666666666666666665554 2222 2222234455555655 66666555543
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=3.2e-16 Score=134.73 Aligned_cols=258 Identities=12% Similarity=0.032 Sum_probs=209.6
Q ss_pred cchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHH
Q 048737 6 GNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQ 85 (274)
Q Consensus 6 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 85 (274)
+++++|.+.|+...+.....|.....|+.+...+...|++++|+..|++..+.. +-+...|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 578999999999887423457677889999999999999999999999998753 3346688888999999999999999
Q ss_pred HHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 048737 86 LWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (274)
.|+++.+.. +.+..+|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++.++.
T Consensus 387 ~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 387 DFDKALKLN---SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999875 5668899999999999999999999999998863 235777888899999999999999999999875
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccH------HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCcc
Q 048737 166 EWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLE------ASANVLLVGLRNLGRLSDVRRFAEEMLNRRILI 239 (274)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 239 (274)
. +.+...++.+...+...|++++|...|++..+.....+. ..++.....+...|++++|..++++..+.. +.
T Consensus 463 ~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~ 540 (615)
T TIGR00990 463 F-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PE 540 (615)
T ss_pred C-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CC
Confidence 3 334678899999999999999999999998875422111 112222333445799999999999988764 23
Q ss_pred CHHHHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 240 YDVTMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
+...+..+...+.+.|+. |.+.++++.+..+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 455788899999999998 8888988876544
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=3.6e-16 Score=134.46 Aligned_cols=254 Identities=9% Similarity=-0.016 Sum_probs=183.6
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhh
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (274)
.+.|++++|+.+++..... .|.+...+..++.+....|++++|+..++++.+.. +.+...+..+...+...|+++.
T Consensus 53 ~~~g~~~~A~~l~~~~l~~---~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLT---AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HhcCCcchhHHHhHHHHHh---CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 4689999999999999877 88888889999999999999999999999999863 4557788888999999999999
Q ss_pred HHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 048737 83 TVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
|...++++.+.. +.+...+..+..++...|++++|...++++...... +...+..+ ..+...|++++|...++.+
T Consensus 129 Ai~~l~~Al~l~---P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 129 VADLAEQAWLAF---SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHhC---CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 999999999865 556788999999999999999999999988765332 23333333 3467788888888888887
Q ss_pred HhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcch----HHHHHHHHHhCCCc
Q 048737 163 IKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSD----VRRFAEEMLNRRIL 238 (274)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~m~~~~~~ 238 (274)
.+..-.++...+..+...+...|++++|...+++..+... .+...+..+...+...|++++ |...|++..+.. +
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P 281 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-S 281 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-C
Confidence 6653223333444445666667777777777777665442 334555556666666666664 566666665542 2
Q ss_pred cCHHHHHHHHHHHHhcChh--HHHHHHHHHH
Q 048737 239 IYDVTMQKLKKAFYNESRS--MRDRFDSLER 267 (274)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 267 (274)
.+...+..+...+...|+. |...++++++
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~ 312 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLA 312 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2444555556666666655 5555555443
No 14
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=1.8e-18 Score=134.53 Aligned_cols=258 Identities=11% Similarity=0.066 Sum_probs=114.8
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
+.+.|++++|+++++..... .-.|.++..|..+.......++++.|++.++++...+. -++..+..++.. ...++++
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~ 94 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPE 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccccc
Confidence 45789999999999765443 22466788888888888899999999999999998652 356677777777 7899999
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHG-AFPDSLTYNMIFECLIKNKKVHEVENFFH 160 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (274)
+|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|++++|++.++
T Consensus 95 ~A~~~~~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 95 EALKLAEKAYER----DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccc----ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999877654 3567778889999999999999999999987543 34577888999999999999999999999
Q ss_pred HHHhCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCcc
Q 048737 161 EMIKNEWQPT-PLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILI 239 (274)
Q Consensus 161 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 239 (274)
+..+. .|+ ......++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|..+|++..+.+ +.
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 99985 464 6778899999999999999999998888754 4566778899999999999999999999998763 44
Q ss_pred CHHHHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 240 YDVTMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
|+.+...+..++...|+. |.++..++.+..+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp -HHHHHHHHHHHT--------------------
T ss_pred ccccccccccccccccccccccccccccccccC
Confidence 788888999999999988 8888887776554
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=5.9e-15 Score=126.96 Aligned_cols=257 Identities=10% Similarity=-0.004 Sum_probs=175.7
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|.+.|++++|++.|++.... .| +...|..+..+|.+.|++++|++.++..++.+ +.+...+..+..++...|+++
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~---~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIEC---KP-DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhc---CC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34567777777777776443 56 45666667777777777777777777766542 223445555555555555555
Q ss_pred hHH-----------------------------------------------------------------------------
Q 048737 82 HTV----------------------------------------------------------------------------- 84 (274)
Q Consensus 82 ~a~----------------------------------------------------------------------------- 84 (274)
+|.
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG 291 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence 554
Q ss_pred -----------------------HHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHH
Q 048737 85 -----------------------QLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD-SLTYN 140 (274)
Q Consensus 85 -----------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 140 (274)
+.|+...+.+...+.....++.+...+...|++++|+..|++..+. .|+ ...|.
T Consensus 292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~ 369 (615)
T TIGR00990 292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYI 369 (615)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHH
Confidence 3333333322000123345666666777788888888888887764 344 55777
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 048737 141 MIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLG 220 (274)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 220 (274)
.+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+... .+...+..+...+.+.|
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCC
Confidence 77888888888888888888887653 33466778888888888888888888888887652 45666777788888888
Q ss_pred CcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHH
Q 048737 221 RLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLERR 268 (274)
Q Consensus 221 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 268 (274)
++++|+..|++..+.. +-+...+..+...+...|+. |.+.++++++.
T Consensus 448 ~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 448 SIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 9999998888887652 33567778888888888877 88887777654
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.72 E-value=3.1e-14 Score=130.24 Aligned_cols=256 Identities=9% Similarity=0.002 Sum_probs=175.0
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHH------------
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA------------ 70 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------ 70 (274)
.+.|++++|++.|+++.+. .|.+..++..+...+...|++++|++.|++..+.. +.+...+..+
T Consensus 362 ~~~g~~~eA~~~~~~Al~~---~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQV---DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHH
Confidence 4678999999999999776 78788889999999999999999999999988743 2233333222
Q ss_pred ------------------------------HHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhH
Q 048737 71 ------------------------------LDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNV 120 (274)
Q Consensus 71 ------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 120 (274)
...+...|++++|.+.|++..+.. +.+...+..+...|.+.|++++|
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHH
Confidence 233456789999999999998875 45677788888999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC-----------------------------------
Q 048737 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN----------------------------------- 165 (274)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----------------------------------- 165 (274)
...++++.+... .+...+..+...+...+++++|...++.+...
T Consensus 515 ~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 999999876432 12322222222223333333333333221100
Q ss_pred ----CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCH
Q 048737 166 ----EWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYD 241 (274)
Q Consensus 166 ----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 241 (274)
..+++...+..+...+.+.|++++|...|++..+... .+...+..+...|...|++++|.+.++...+.. +.+.
T Consensus 594 ~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~ 671 (1157)
T PRK11447 594 ALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSL 671 (1157)
T ss_pred HHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCCh
Confidence 1233445566677777788888888888888777542 456677777778888888888888888766542 2234
Q ss_pred HHHHHHHHHHHhcChh--HHHHHHHHHHH
Q 048737 242 VTMQKLKKAFYNESRS--MRDRFDSLERR 268 (274)
Q Consensus 242 ~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 268 (274)
.++..+..++...|+. |.++++.+++.
T Consensus 672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 672 NTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 4555666677777777 77777777654
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.71 E-value=5.7e-15 Score=119.47 Aligned_cols=217 Identities=11% Similarity=0.136 Sum_probs=145.4
Q ss_pred cchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChhhHH
Q 048737 6 GNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHTV 84 (274)
Q Consensus 6 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 84 (274)
+.+++|...|.+.... .|....+|..+...|-..|+++.|+..|++.++. .|+ +..|+.|..++-..|++.+|.
T Consensus 266 ~~~d~Avs~Y~rAl~l---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~ 340 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNL---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAV 340 (966)
T ss_pred hcchHHHHHHHHHHhc---CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHH
Confidence 3444444444444332 4444555555555555555666666666555543 333 556777777777777777777
Q ss_pred HHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 85 QLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD-SLTYNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
..|.+..... +......+.|...|...|.+++|..+|....+ +.|. ...++.|...|.+.|++++|+..|.+.+
T Consensus 341 ~cYnkaL~l~---p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 341 DCYNKALRLC---PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHhC---CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 7777777653 33456677777777777777777777777666 3444 5567777777888888888888887777
Q ss_pred hCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 164 KNEWQPT-PLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 164 ~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
+ +.|+ ...|+.+...|-..|+.+.|.+.+.+.+..+. .-...++.|...|-..|++.+|++-+++..+.
T Consensus 416 r--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP-t~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 416 R--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP-TFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred h--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc-HHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 6 4565 46777777888888888888888877776442 22466778888888888888888888887765
No 18
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=2.1e-13 Score=102.25 Aligned_cols=229 Identities=12% Similarity=0.101 Sum_probs=186.7
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhCCChh
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT---LKFFSNALDILVKLNDST 81 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 81 (274)
+++.++|.++|-+|.+. .|.+..+.-+|.+.|-+.|..|+|+++-..+.++.-.+. ....-.|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~---d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE---DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhc---CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 56789999999999876 777888888999999999999999999999887532121 234456677888999999
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCCHhHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD----SLTYNMIFECLIKNKKVHEVEN 157 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~ 157 (274)
.|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+. ...|..+...+....+.+.|..
T Consensus 125 RAE~~f~~L~de~---efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 125 RAEDIFNQLVDEG---EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred HHHHHHHHHhcch---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 9999999999866 44566788999999999999999999999988765544 2456677777777889999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 048737 158 FFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI 237 (274)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 237 (274)
.+.+..+.. +..+..-..+.+.....|++..|.+.|+...+.+..--..+...|..+|...|+.++...++..+.+...
T Consensus 202 ~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 999988754 2334445567788889999999999999999988766678889999999999999999999988877644
Q ss_pred ccC
Q 048737 238 LIY 240 (274)
Q Consensus 238 ~~~ 240 (274)
.++
T Consensus 281 g~~ 283 (389)
T COG2956 281 GAD 283 (389)
T ss_pred Ccc
Confidence 333
No 19
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=2e-14 Score=111.62 Aligned_cols=239 Identities=12% Similarity=0.166 Sum_probs=192.9
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhH
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMY 104 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (274)
.|.+..+|..+|.++++--..+.|.+++++..+...+.+..+||.+|.+-.-. ...++..+|.... +.||..|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqk--m~Pnl~Tf 276 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQK--MTPNLFTF 276 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhh--cCCchHhH
Confidence 45578899999999999999999999999999888899999999999876533 3388999999988 99999999
Q ss_pred HHHHHHHHhcCChhhH----HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhH-HHHHHHHHHh----CCCCC----Cc
Q 048737 105 NAVVGLLCNNNDVDNV----FRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHE-VENFFHEMIK----NEWQP----TP 171 (274)
Q Consensus 105 ~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~ 171 (274)
|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.+++.+ +..++..+.. +..+| |.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 9999999999988765 5667789999999999999999999999988765 4444444433 22233 34
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCccH---HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHH
Q 048737 172 LNCATAITMLLDADEPEFAIEIWNYILEN----GILPLE---ASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTM 244 (274)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 244 (274)
..|...|..|.+..+.+-|..+-.-+... -+.|+. .-|..+....++....+.....|+.|.-.-.-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 56778899999999999999887766532 133332 33566778888999999999999999999889999999
Q ss_pred HHHHHHHHhcChh--HHHHHHHHHHHh
Q 048737 245 QKLKKAFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 245 ~~l~~~~~~~g~~--a~~~~~~~~~~~ 269 (274)
..++++....|.+ ..++|..++.-+
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 9999999998887 555555555443
No 20
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.69 E-value=4.5e-13 Score=109.63 Aligned_cols=255 Identities=11% Similarity=0.012 Sum_probs=167.3
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhCCChh
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK--FFSNALDILVKLNDST 81 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 81 (274)
..|+++.|++.+.+..+. .|.....+-....+..+.|+++.|.+.+.+..+.. |+.. .-......+...|+++
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 357777777777666553 44233344444566666677777777777765432 3332 2233456666677777
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---------------------------
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP--------------------------- 134 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------------- 134 (274)
.|...++.+.+.. |.+..++..+...+.+.|+++.|.+.+..+.+.++.+
T Consensus 171 ~Al~~l~~l~~~~---P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 171 AARHGVDKLLEMA---PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 7777777777664 4455666677777777777777777666665543221
Q ss_pred --------------ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchH-HHHHHHH--HhcCChHHHHHHHHHH
Q 048737 135 --------------DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNC-ATAITML--LDADEPEFAIEIWNYI 197 (274)
Q Consensus 135 --------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~--~~~~~~~~a~~~~~~~ 197 (274)
+...+..+...+...|+.++|.+++++..+.. ||.... ..++..+ ...++.+.+.+.++..
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 34445556667777788888888888887753 444321 0122222 3346777787777777
Q ss_pred HHCCCCccH--HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHHh
Q 048737 198 LENGILPLE--ASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 198 ~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 269 (274)
.+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+. |.+++++.....
T Consensus 326 lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 326 AKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6643 1233 556688889999999999999999655544578999999999999999988 888888776543
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.69 E-value=1.5e-13 Score=121.63 Aligned_cols=248 Identities=10% Similarity=-0.032 Sum_probs=140.8
Q ss_pred hHHHHHHHHHHHhccCCCCc--hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHH
Q 048737 8 VVEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQ 85 (274)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 85 (274)
..++....+......+..|+ +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|..
T Consensus 454 ~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~ 530 (987)
T PRK09782 454 LPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALA 530 (987)
T ss_pred hhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 33333333333333344455 55666666666655 5666666666665543 2444333333444456677777777
Q ss_pred HHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 048737 86 LWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (274)
.|+++... +|+...+..+..++.+.|++++|...+++..+.. +++...+..+...+...|++++|...+++..+.
T Consensus 531 ~~rka~~~----~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l 605 (987)
T PRK09782 531 AWQKISLH----DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI 605 (987)
T ss_pred HHHHHhcc----CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 77665442 2333445555566666677777777776666543 112222223333334456777777777666653
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHH
Q 048737 166 EWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQ 245 (274)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 245 (274)
.|+...+..+..++.+.|++++|...+++..+... .+...++.+..++...|++++|+..+++..+.. +-+...+.
T Consensus 606 --~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~ 681 (987)
T PRK09782 606 --APSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIR 681 (987)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 35555666666666677777777777766666542 344555666666666677777777766666543 22445566
Q ss_pred HHHHHHHhcChh--HHHHHHHHHH
Q 048737 246 KLKKAFYNESRS--MRDRFDSLER 267 (274)
Q Consensus 246 ~l~~~~~~~g~~--a~~~~~~~~~ 267 (274)
.+..++...|+. |...++++++
T Consensus 682 nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 682 QLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh
Confidence 666666666666 6666666554
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.69 E-value=9e-14 Score=127.26 Aligned_cols=252 Identities=8% Similarity=0.013 Sum_probs=199.4
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhh
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (274)
...|++++|++.|++..+. .|+++..+..+...|.+.|++++|+..++++.+.. +.++..+..+...+...++.++
T Consensus 472 ~~~g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLAL---DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHH
Confidence 3579999999999999776 89888899999999999999999999999998743 3455555556666778899999
Q ss_pred HHHHHHHHHhcCCccCccH---------HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHh
Q 048737 83 TVQLWDIMVGIGFNLMPNL---------IMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVH 153 (274)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 153 (274)
|...++.+.... ..++. ..+..+...+...|+.++|.++++. .+++...+..+...+.+.|+++
T Consensus 548 Al~~l~~l~~~~--~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 548 ALAHLNTLPRAQ--WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred HHHHHHhCCchh--cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHH
Confidence 999998875433 12221 1233456778899999999999882 2456677888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 048737 154 EVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEML 233 (274)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 233 (274)
+|+..|++..+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+..++...|++++|.++++.+.
T Consensus 621 ~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 621 AARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999999999864 34577889999999999999999999998876532 345567778888999999999999999998
Q ss_pred hCCC--cc---CHHHHHHHHHHHHhcChh--HHHHHHHHHH
Q 048737 234 NRRI--LI---YDVTMQKLKKAFYNESRS--MRDRFDSLER 267 (274)
Q Consensus 234 ~~~~--~~---~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 267 (274)
.... .| +...+..+...+...|+. |.+.++.++.
T Consensus 699 ~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 699 PQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7532 22 234566667788888888 8888888764
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.69 E-value=1.2e-14 Score=117.64 Aligned_cols=248 Identities=11% Similarity=0.110 Sum_probs=154.0
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChhhH
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHT 83 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 83 (274)
+|++..|+.-|++... ++|.-..+|-.|...|...+.+++|+..|.+.... +|+ ...+..+...|...|.++.|
T Consensus 231 ~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlA 305 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLA 305 (966)
T ss_pred cchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHH
Confidence 4556666666665533 35655556666666666666666666666665542 333 44555555666666777777
Q ss_pred HHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
...|++.++.. +.=...|+.|..++...|++.+|+..|.+.+... +-...+.+.|...|...|.+++|..+|....
T Consensus 306 I~~Ykral~~~---P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al 381 (966)
T KOG4626|consen 306 IDTYKRALELQ---PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKAL 381 (966)
T ss_pred HHHHHHHHhcC---CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 77777766643 2225567777777777777777777777766542 1235566667777777777777777776666
Q ss_pred hCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCH
Q 048737 164 KNEWQPT-PLNCATAITMLLDADEPEFAIEIWNYILENGILPL-EASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYD 241 (274)
Q Consensus 164 ~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 241 (274)
+ +.|. ...++.|...|-..|++++|...|++... +.|+ ...|+.+-..|-..|+++.|.+.+.+.+.-+. .-.
T Consensus 382 ~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP-t~A 456 (966)
T KOG4626|consen 382 E--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP-TFA 456 (966)
T ss_pred h--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc-HHH
Confidence 5 3343 34566777777777777777777776665 3344 35666677777777777777777777665431 123
Q ss_pred HHHHHHHHHHHhcChh--HHHHHHHHH
Q 048737 242 VTMQKLKKAFYNESRS--MRDRFDSLE 266 (274)
Q Consensus 242 ~~~~~l~~~~~~~g~~--a~~~~~~~~ 266 (274)
..++.|...+..+|+. |..-++.++
T Consensus 457 eAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 457 EAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 5566677777777766 555555444
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=8.3e-13 Score=107.56 Aligned_cols=247 Identities=9% Similarity=-0.023 Sum_probs=179.4
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHH-HHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHH--HHHHHHHhCCChh
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETF-LITLIRGKQVDEALKFLRVMKGENCFPTLKFFS--NALDILVKLNDST 81 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 81 (274)
.|++++|++......+. .+ ++..+..+ .....+.|+++.|.+.+.++.+. .|+..... .....+...|+++
T Consensus 97 eGd~~~A~k~l~~~~~~---~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AE-QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHhc---cc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence 58888888777766553 21 23333333 44447888888888888888763 45543332 3356777888888
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---------------------------
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP--------------------------- 134 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------------- 134 (274)
.|...++++.+.. |.+......+...|.+.|++++|.+++..+.+.+..+
T Consensus 171 ~Al~~l~~~~~~~---P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 247 (398)
T PRK10747 171 AARHGVDKLLEVA---PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG 247 (398)
T ss_pred HHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 8888888888875 5567778888888888888888888887776554321
Q ss_pred --------------ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048737 135 --------------DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN 200 (274)
Q Consensus 135 --------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (274)
++.....+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+.
T Consensus 248 l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 248 LKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh
Confidence 2334445566777888999999999888773 344422 2334444568889999998888876
Q ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHH
Q 048737 201 GILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLER 267 (274)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 267 (274)
. +-|...+..+...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+. |.+.+.+.+.
T Consensus 324 ~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 H-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 355667888899999999999999999999886 68999999999999999988 8777776654
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=99.67 E-value=2e-13 Score=115.75 Aligned_cols=248 Identities=9% Similarity=0.008 Sum_probs=172.1
Q ss_pred cchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHh---------ccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048737 6 GNVVEANKTFGEMVERFEWNPEHVLAYETFLITLI---------RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 76 (274)
Q Consensus 6 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (274)
+.+++|.+.|++..+. .|++..+|..+..++. ..+++++|...+++..+.+ +-+...+..+...+..
T Consensus 275 ~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 4567888999988665 8878878877766554 2345789999999988764 4467778888888888
Q ss_pred CCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHhHH
Q 048737 77 LNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD-SLTYNMIFECLIKNKKVHEV 155 (274)
Q Consensus 77 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a 155 (274)
.|++++|...|+++.+.+ +.+...+..+..++...|++++|...+++..+.. |+ ...+..++..+...|++++|
T Consensus 351 ~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLS---PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred ccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHH
Confidence 999999999999999876 5567778888889999999999999999988853 43 22333444556678899999
Q ss_pred HHHHHHHHhCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 156 ENFFHEMIKNEWQPT-PLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 156 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
...+++..+.. .|+ +..+..+..++...|++++|...+.++..... .+....+.+...|...| ++|...++.+.+
T Consensus 426 ~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 426 IRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 99998887653 343 44567777888889999999999988765421 23344555556667777 477777777665
Q ss_pred C-CCccCHHHHHHHHHHHHhcChhHHHHHHHHHH
Q 048737 235 R-RILIYDVTMQKLKKAFYNESRSMRDRFDSLER 267 (274)
Q Consensus 235 ~-~~~~~~~~~~~l~~~~~~~g~~a~~~~~~~~~ 267 (274)
. ...|.......++.++....+. ..+++++.+
T Consensus 502 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~ 534 (553)
T PRK12370 502 SEQRIDNNPGLLPLVLVAHGEAIA-EKMWNKFKN 534 (553)
T ss_pred HhhHhhcCchHHHHHHHHHhhhHH-HHHHHHhhc
Confidence 3 2223333334444444333332 233354443
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=1.5e-15 Score=118.16 Aligned_cols=220 Identities=16% Similarity=0.165 Sum_probs=115.4
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhH
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (274)
..++++.|++.++++... .|.++..+..++.. ...+++++|.+++....+. .+++..+..++..+...++++.+
T Consensus 56 ~~~~~~~A~~ay~~l~~~---~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~ 129 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLAS---DKANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEA 129 (280)
T ss_dssp --------------------------------------------------------------------H-HHHTT-HHHH
T ss_pred cccccccccccccccccc---cccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHH
Confidence 467899999999999765 55567778888887 7999999999999887664 36677788899999999999999
Q ss_pred HHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 048737 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
..+++.+..... .+++...|..+...+.+.|+.++|++.+++..+. .| |....+.++..+...|+.+++..++...
T Consensus 130 ~~~l~~~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 130 EELLEKLEELPA-APDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp HHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 999999876431 3567888999999999999999999999999986 35 5778889999999999999999999888
Q ss_pred HhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 163 IKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
.+.. +.|+..+..+..++...|+.++|...+++..+.. +.|+.....+..++...|+.++|.++.++..+
T Consensus 207 ~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 207 LKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred HHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 7754 5667788999999999999999999999998865 35778888999999999999999999887643
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.65 E-value=4.2e-13 Score=101.38 Aligned_cols=200 Identities=10% Similarity=0.103 Sum_probs=122.1
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHH
Q 048737 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVV 108 (274)
Q Consensus 29 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 108 (274)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|.+.+++..+.. +.+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN---PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHH
Confidence 4556666667777777777777777666542 3345556666666667777777777777776654 34455666666
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCh
Q 048737 109 GLLCNNNDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEP 187 (274)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (274)
..+...|++++|.+.+++.......| ....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 66777777777777777666532111 23445555666666677777777776666542 22344555666666666777
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 188 EFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777666666654 223444555555666666666666666655543
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.65 E-value=1e-12 Score=116.48 Aligned_cols=218 Identities=9% Similarity=-0.028 Sum_probs=178.8
Q ss_pred cchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHH
Q 048737 6 GNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQ 85 (274)
Q Consensus 6 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 85 (274)
|+.++|...|.+.... .|+ ......+...+...|++++|+..|+++... +|+...+..+..++.+.|+++.|..
T Consensus 490 ~~~~eAi~a~~~Al~~---~Pd-~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~ 563 (987)
T PRK09782 490 TLPGVALYAWLQAEQR---QPD-AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDR 563 (987)
T ss_pred CCcHHHHHHHHHHHHh---CCc-hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHH
Confidence 6888999989888776 674 333444555567899999999999998654 4555666777888899999999999
Q ss_pred HHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 048737 86 LWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (274)
.+++..+.. +++...+..+.....+.|++++|...+++..+. .|+...|..+...+.+.|++++|+..+++..+.
T Consensus 564 ~l~qAL~l~---P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 564 WLQQAEQRG---LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL 638 (987)
T ss_pred HHHHHHhcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999865 344444444445555679999999999999885 567889999999999999999999999999886
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 048737 166 EWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 236 (274)
. +.+...++.+...+...|++++|...+++..+... -+...+..+..++...|++++|...+++..+..
T Consensus 639 ~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 639 E-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4 33456778888899999999999999999998653 566788999999999999999999999998763
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.63 E-value=1.6e-12 Score=114.25 Aligned_cols=258 Identities=12% Similarity=0.053 Sum_probs=156.1
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
+.+.|++++|.++|++..+. .|.++..+..++..+...|++++|+..+++..+. .+.+.. +..+..++...|+.+
T Consensus 59 ~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~ 133 (765)
T PRK10049 59 YRNLKQWQNSLTLWQKALSL---EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHW 133 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHH
Confidence 34567888888888887665 6767777777888888888888888888888765 244455 777777778888888
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHH------------------------------------
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFD------------------------------------ 125 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------------------------------------ 125 (274)
.|...++++.+.. +.+...+..+..++...++.+.|++.++
T Consensus 134 ~Al~~l~~al~~~---P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~ 210 (765)
T PRK10049 134 DELRAMTQALPRA---PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYA 210 (765)
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHH
Confidence 8888888888764 4445555555556555555554443333
Q ss_pred ----------HHHhc-CCCCChh-hHH----HHHHHHHhcCCHhHHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCChH
Q 048737 126 ----------QMVFH-GAFPDSL-TYN----MIFECLIKNKKVHEVENFFHEMIKNEWQ-PTPLNCATAITMLLDADEPE 188 (274)
Q Consensus 126 ----------~~~~~-~~~~~~~-~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 188 (274)
.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|+++
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e 289 (765)
T PRK10049 211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPE 289 (765)
T ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcH
Confidence 33221 0111111 111 1123345567777777777777765421 221 1222456777777788
Q ss_pred HHHHHHHHHHHCCCCc---cHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC-----------ccCH---HHHHHHHHHH
Q 048737 189 FAIEIWNYILENGILP---LEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI-----------LIYD---VTMQKLKKAF 251 (274)
Q Consensus 189 ~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-----------~~~~---~~~~~l~~~~ 251 (274)
+|+..|+++.+..... .......+..++...|++++|..+++.+.+... .|+. ..+..+...+
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 8877777766543111 123455556667777777777777777765421 1221 2344555666
Q ss_pred HhcChh--HHHHHHHHHHH
Q 048737 252 YNESRS--MRDRFDSLERR 268 (274)
Q Consensus 252 ~~~g~~--a~~~~~~~~~~ 268 (274)
...|+. |.++++++++.
T Consensus 370 ~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYN 388 (765)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 666766 77776666543
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=6e-14 Score=114.19 Aligned_cols=245 Identities=11% Similarity=0.061 Sum_probs=139.9
Q ss_pred CcccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHhCCC
Q 048737 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL-RVMKGENCFPTLKFFSNALDILVKLND 79 (274)
Q Consensus 1 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (274)
||...+++++|+++|+.+.+......++.+.|.+.+-.+-+.- ++..+ +.+... -+-.+.+|.++.++|.-.++
T Consensus 362 ayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkd 436 (638)
T KOG1126|consen 362 AYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSYLAQDLIDT-DPNSPESWCALGNCFSLQKD 436 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhH
Confidence 4677889999999999998873444445555555554332211 12222 222222 13345666777777766677
Q ss_pred hhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 048737 80 STHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFF 159 (274)
Q Consensus 80 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 159 (274)
.+.|.+.|++.++.+ +....+|+.+..-+.....+|+|...|+..+.... -+-.+|--+...|.+.++++.|+-.|
T Consensus 437 h~~Aik~f~RAiQld---p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~f 512 (638)
T KOG1126|consen 437 HDTAIKCFKRAIQLD---PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP-RHYNAWYGLGTVYLKQEKLEFAEFHF 512 (638)
T ss_pred HHHHHHHHHHhhccC---CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc-hhhHHHHhhhhheeccchhhHHHHHH
Confidence 777777777766644 33566666666666666667777776666654211 01223334555566666667776666
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCcc
Q 048737 160 HEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILI 239 (274)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 239 (274)
.+..+.+ +-+.+....+...+-+.|+.++|++++++....+. -|+..--.-...+...+++++|+..++++.+. ++-
T Consensus 513 qkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~ 589 (638)
T KOG1126|consen 513 QKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQ 589 (638)
T ss_pred HhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-Ccc
Confidence 6666533 22344555555666666666777777666665443 22222223344455566666677666666654 222
Q ss_pred CHHHHHHHHHHHHhcChh
Q 048737 240 YDVTMQKLKKAFYNESRS 257 (274)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~ 257 (274)
+...|..+.+.|.+.|+.
T Consensus 590 es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 590 ESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hHHHHHHHHHHHHHHccc
Confidence 344455566666666654
No 31
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=1.1e-13 Score=112.73 Aligned_cols=244 Identities=12% Similarity=0.087 Sum_probs=181.6
Q ss_pred chHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhCCChhhHH
Q 048737 7 NVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN--CFPTLKFFSNALDILVKLNDSTHTV 84 (274)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (274)
+..+|..+|..+... .+++......+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+--+-+ +.+.
T Consensus 334 ~~~~A~~~~~klp~h---~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH---HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHhhHHh---cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 457788888887665 56455566678888999999999999999887742 11245666666544322 1222
Q ss_pred HH-HHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 048737 85 QL-WDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 85 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
.. -+.+.... +..+.+|.++.++|.-.++.+.|++.|++..+. .| ...+|+.+..-+.....+|+|...|+..
T Consensus 407 s~Laq~Li~~~---~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 407 SYLAQDLIDTD---PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHhhC---CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 22 23444443 556889999999999999999999999999884 45 6889999999999999999999999988
Q ss_pred HhCCCCCCcchH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCcc
Q 048737 163 IKNEWQPTPLNC---ATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILI 239 (274)
Q Consensus 163 ~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 239 (274)
+. .|+..| .-+.-.|.+.++++.|+--|++..+.+. -+.+....+...+-+.|+.|+|+.++++.......
T Consensus 482 l~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k- 555 (638)
T KOG1126|consen 482 LG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK- 555 (638)
T ss_pred hc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-
Confidence 65 444444 4567789999999999999999988664 45666777788889999999999999999877544
Q ss_pred CHHHHHHHHHHHHhcChh--HHHHHHHHHHH
Q 048737 240 YDVTMQKLKKAFYNESRS--MRDRFDSLERR 268 (274)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 268 (274)
|+..-..-...+...++. |...++++.+.
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 444444445556666655 88888777653
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.62 E-value=3e-12 Score=111.51 Aligned_cols=254 Identities=8% Similarity=-0.004 Sum_probs=170.5
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhh
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (274)
.+.|+++.|++.|++..+. .|.+......++..+...|+.++|+..+++.... .+........+...+...|++++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~---~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKA---GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHhh---CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 5778899999999988765 7755322337778888888888888888888721 12333444444567778888888
Q ss_pred HHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 048737 83 TVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
|.++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+..++++
T Consensus 121 Aiely~kaL~~d---P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 121 ALALWQSSLKKD---PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHhhC---CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 888888888875 455667777778888888888888888888764 455555544433343455555577777777
Q ss_pred HhCCCCCC-cchHHHH----------------------------------------------------------------
Q 048737 163 IKNEWQPT-PLNCATA---------------------------------------------------------------- 177 (274)
Q Consensus 163 ~~~~~~~~-~~~~~~l---------------------------------------------------------------- 177 (274)
.+.. |+ ...+..+
T Consensus 196 l~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 196 VRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 6542 22 1111111
Q ss_pred -------------------------HHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 048737 178 -------------------------ITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEM 232 (274)
Q Consensus 178 -------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 232 (274)
+-++...+++.++++.|+.+...+.+....+-..+..+|...+++++|..+++.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3344556677777777777776664433456677788888888888888888887
Q ss_pred HhCC-----CccCHHHHHHHHHHHHhcChh--HHHHHHHHHH
Q 048737 233 LNRR-----ILIYDVTMQKLKKAFYNESRS--MRDRFDSLER 267 (274)
Q Consensus 233 ~~~~-----~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 267 (274)
.... ..++......|..++...++. |..+++.+.+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 6542 122333456778888888877 7777777765
No 33
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.62 E-value=5.5e-13 Score=100.76 Aligned_cols=192 Identities=10% Similarity=0.077 Sum_probs=161.3
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|...|++++|.+.|++..+. .|.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~ 116 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEH---DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYE 116 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHH
Confidence 45689999999999999775 68788899999999999999999999999998764 456678888899999999999
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHE 161 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (274)
+|.+.+++...... .+.....+..+..++...|++++|...+++..... +.+...+..+...+...|++++|...+++
T Consensus 117 ~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 117 QAMQQFEQAIEDPL-YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHHHHHHHhccc-cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999987531 12345677788899999999999999999988763 23567888899999999999999999999
Q ss_pred HHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048737 162 MIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN 200 (274)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (274)
..+. .+.+...+..+...+...|+.+.|..+++.+...
T Consensus 195 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 195 YQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9876 2445667777888888999999999988877653
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=4.5e-13 Score=109.08 Aligned_cols=217 Identities=16% Similarity=0.108 Sum_probs=139.2
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCH-------HHHHHHHHHHHhC
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-------KFFSNALDILVKL 77 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 77 (274)
.|+++.|.+.++++.+. .|+++..+..+...|.+.|+|++|.+++..+.+.+..++. .+|..++......
T Consensus 166 ~g~~~~Al~~l~~~~~~---~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 166 RNENHAARHGVDKLLEV---APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred CCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444333 3444444444444444444444444444444443322111 0111222222222
Q ss_pred CChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 048737 78 NDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVEN 157 (274)
Q Consensus 78 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 157 (274)
.+.+...++|+.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+... .++.+....++++++.+
T Consensus 243 ~~~~~l~~~w~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 243 QGSEGLKRWWKNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEK 315 (398)
T ss_pred cCHHHHHHHHHhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHH
Confidence 2333333333333222 2345666777888999999999999999999874 445422 23344456699999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 158 FFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
..+...+.. +-|+..+.++...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 316 ~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 316 VLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999998753 334566889999999999999999999999985 48888999999999999999999999998754
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=8.2e-13 Score=102.79 Aligned_cols=234 Identities=12% Similarity=0.113 Sum_probs=173.5
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HHhCCChhhH-HHHHHHHHhcC-------
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI--LVKLNDSTHT-VQLWDIMVGIG------- 94 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a-~~~~~~~~~~~------- 94 (274)
.|..+.+=|.|+.. ...|.+..+.-+|+.|.+.|++.++..-..|+.. |.+..++--+ ++.|-.|...|
T Consensus 112 ~~~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW 190 (625)
T KOG4422|consen 112 DPLQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW 190 (625)
T ss_pred CchhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc
Confidence 35455566666654 5578889999999999999988887766655543 3333332222 12222232222
Q ss_pred ----------CccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 95 ----------FNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 95 ----------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
...+.+..++.++|.+.++-...+.|.+++++......+.+..+||.+|.+-.-.. ..+++.+|..
T Consensus 191 K~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMis 266 (625)
T KOG4422|consen 191 KSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMIS 266 (625)
T ss_pred ccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHH
Confidence 01355778999999999999999999999999988888889999999998765443 3788999999
Q ss_pred CCCCCCcchHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcch-HHHHHHHHHh----C
Q 048737 165 NEWQPTPLNCATAITMLLDADEPEF----AIEIWNYILENGILPLEASANVLLVGLRNLGRLSD-VRRFAEEMLN----R 235 (274)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~----~ 235 (274)
..+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. +
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 9999999999999999999998876 56788899999999999999999999999888755 5555555544 2
Q ss_pred CCcc----CHHHHHHHHHHHHhcChh--HHHHHH
Q 048737 236 RILI----YDVTMQKLKKAFYNESRS--MRDRFD 263 (274)
Q Consensus 236 ~~~~----~~~~~~~l~~~~~~~g~~--a~~~~~ 263 (274)
.++| |..-|.+.+..|.+..+. |..+..
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ 380 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHG 380 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2222 345566777788877766 665554
No 36
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.61 E-value=7.2e-12 Score=110.23 Aligned_cols=256 Identities=10% Similarity=0.008 Sum_probs=188.0
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhh
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (274)
...|+.++|+++|.+.... .|.+...+..+...+.+.|++++|.+++++..+.. +.+...+..+..++...|++++
T Consensus 26 ~~~g~~~~A~~~~~~~~~~---~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVH---MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3478999999999998653 56567779999999999999999999999998753 4557778888899999999999
Q ss_pred HHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHH---
Q 048737 83 TVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFF--- 159 (274)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~--- 159 (274)
|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+. +...+..+...+...+..++|+..+
T Consensus 102 A~~~l~~~l~~~---P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 102 ALVKAKQLVSGA---PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHhC---CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 999999999875 55666 888999999999999999999999986322 4555556666666666655444333
Q ss_pred -------------------------------------------HHHHhC-CCCCCcc-hHHH----HHHHHHhcCChHHH
Q 048737 160 -------------------------------------------HEMIKN-EWQPTPL-NCAT----AITMLLDADEPEFA 190 (274)
Q Consensus 160 -------------------------------------------~~~~~~-~~~~~~~-~~~~----l~~~~~~~~~~~~a 190 (274)
+.+.+. ...|+.. .+.. .+..+...|++++|
T Consensus 177 ~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 177 NLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV 256 (765)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 333322 1122221 1111 12344577899999
Q ss_pred HHHHHHHHHCCCC-ccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCcc---CHHHHHHHHHHHHhcChh--HHHHHHH
Q 048737 191 IEIWNYILENGIL-PLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILI---YDVTMQKLKKAFYNESRS--MRDRFDS 264 (274)
Q Consensus 191 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~g~~--a~~~~~~ 264 (274)
+..|+++.+.+.. |+. .-..+..+|...|++++|...|+++.+..... .......+..++...|+. |.+.++.
T Consensus 257 ~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999999887532 332 22225678999999999999999987653211 134566677788888888 8888888
Q ss_pred HHHH
Q 048737 265 LERR 268 (274)
Q Consensus 265 ~~~~ 268 (274)
+.+.
T Consensus 336 ~~~~ 339 (765)
T PRK10049 336 TINN 339 (765)
T ss_pred Hhhc
Confidence 7764
No 37
>PRK12370 invasion protein regulator; Provisional
Probab=99.60 E-value=4.1e-12 Score=107.82 Aligned_cols=236 Identities=11% Similarity=0.004 Sum_probs=174.7
Q ss_pred CCchHhHHHHHHHHHhc-----cCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH---------hCCChhhHHHHHHHH
Q 048737 25 NPEHVLAYETFLITLIR-----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILV---------KLNDSTHTVQLWDIM 90 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~ 90 (274)
.|.+..+|...+.+... .+.+++|+.+|++..+.. +-+...|..+..++. ..+++++|...++++
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 44466667666666322 245789999999998753 223455655555443 234578999999999
Q ss_pred HhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 048737 91 VGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT 170 (274)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 170 (274)
.+.+ +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. |+
T Consensus 331 l~ld---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~ 404 (553)
T PRK12370 331 TELD---HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PT 404 (553)
T ss_pred HhcC---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC
Confidence 9976 5678889999999999999999999999999864 2246788889999999999999999999998854 54
Q ss_pred c-chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHH-HHHHHH
Q 048737 171 P-LNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDV-TMQKLK 248 (274)
Q Consensus 171 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~l~ 248 (274)
. ..+..++..+...|++++|...+++..+...+-+...+..+..++...|++++|...+.++... .|+.. ..+.+.
T Consensus 405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~ 482 (553)
T PRK12370 405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLY 482 (553)
T ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHH
Confidence 3 2334445556778999999999999887543224455777888889999999999999987655 34433 344555
Q ss_pred HHHHhcChhHHHHHHHHHHHh
Q 048737 249 KAFYNESRSMRDRFDSLERRW 269 (274)
Q Consensus 249 ~~~~~~g~~a~~~~~~~~~~~ 269 (274)
..+...|+.+...++.+.+..
T Consensus 483 ~~~~~~g~~a~~~l~~ll~~~ 503 (553)
T PRK12370 483 AEYCQNSERALPTIREFLESE 503 (553)
T ss_pred HHHhccHHHHHHHHHHHHHHh
Confidence 567777877777777766544
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=3.4e-11 Score=92.99 Aligned_cols=254 Identities=12% Similarity=0.043 Sum_probs=190.7
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHH
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTV 84 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (274)
.|+|.+|+++..+-.+. +-.| ...|..-+.+.-+.|+.+.+-.++.+..+..-.++...+-+........|+.+.|.
T Consensus 97 eG~~~qAEkl~~rnae~-~e~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH-GEQP--VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhc-Ccch--HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 69999999999997774 5555 44677777888899999999999999987533566667777788899999999999
Q ss_pred HHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCCHhHHHH
Q 048737 85 QLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS-------LTYNMIFECLIKNKKVHEVEN 157 (274)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~ 157 (274)
.-..++.+.+ +.+..+......+|.+.|+++....++.++.+.|.-.+. .+|..+++-....+..+.-..
T Consensus 174 ~~v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 174 ENVDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 9999999987 778899999999999999999999999999988865443 345555554444444444334
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC------------------------------CccHH
Q 048737 158 FFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI------------------------------LPLEA 207 (274)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------~~~~~ 207 (274)
.|+..... .+.++..-.+++.-+.+.|+.+.|.++..+..+.+. +-++.
T Consensus 251 ~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 251 WWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred HHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 44443322 233444445555555556666666555554443332 22347
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHH
Q 048737 208 SANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLER 267 (274)
Q Consensus 208 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 267 (274)
.+.+|-..|.+.+.+.+|.+.|+...+. .|+..+|..+.+++.+.|+. |.+..++.+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7888889999999999999999977765 78999999999999999998 8888777663
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=2e-12 Score=105.89 Aligned_cols=223 Identities=11% Similarity=0.005 Sum_probs=155.8
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHH---HhCCC
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS-NALDIL---VKLND 79 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~ 79 (274)
..|+++.|++.++.+.+. .|+++.++..+...+.+.|++++|.+.+..+.+.+.. +...+. .-..++ ...+.
T Consensus 165 ~~~~~~~Al~~l~~l~~~---~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEM---APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888776 6777778888888888888888888888888877543 332221 111111 22222
Q ss_pred hhhHHHHHHHHHhcCC-ccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh---HHHHHHHHHhcCCHhHH
Q 048737 80 STHTVQLWDIMVGIGF-NLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLT---YNMIFECLIKNKKVHEV 155 (274)
Q Consensus 80 ~~~a~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a 155 (274)
.+.+...+..+.+... ..+.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHH
Confidence 2222333333333220 012377888889999999999999999999999863 44332 12222223445788889
Q ss_pred HHHHHHHHhCCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 048737 156 ENFFHEMIKNEWQPTP---LNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEM 232 (274)
Q Consensus 156 ~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 232 (274)
.+.++...+. .|+. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 319 ~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 319 EKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999888765 3544 4566889999999999999999996555445688888999999999999999999999986
Q ss_pred Hh
Q 048737 233 LN 234 (274)
Q Consensus 233 ~~ 234 (274)
..
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 43
No 40
>PF13041 PPR_2: PPR repeat family
Probab=99.56 E-value=1.3e-14 Score=81.38 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=36.9
Q ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 048737 204 PLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYN 253 (274)
Q Consensus 204 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 253 (274)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 66777777777777777777777777777777777777777777777654
No 41
>PF13041 PPR_2: PPR repeat family
Probab=99.55 E-value=1.5e-14 Score=81.05 Aligned_cols=49 Identities=29% Similarity=0.673 Sum_probs=25.6
Q ss_pred ccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 048737 99 PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 147 (274)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 147 (274)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555543
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.55 E-value=3.3e-11 Score=105.09 Aligned_cols=259 Identities=12% Similarity=0.092 Sum_probs=182.7
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|...|++++|+++|+++.+. .|+++..+..++..+...++.++|++.++++... .|+...+..++..+...++..
T Consensus 112 y~~~gdyd~Aiely~kaL~~---dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKK---DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 34568999999999999777 8888888888888999999999999999998875 466555655555554566666
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHH-------------------------------------
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFF------------------------------------- 124 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------------------------------------- 124 (274)
+|.+.++++.+.. |.+...+..+..+..+.|-...|.++.
T Consensus 187 ~AL~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 187 DALQASSEAVRLA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 6999999998875 445555566666665555444443333
Q ss_pred -----------HHHHhc-CCCCCh-h----hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCh
Q 048737 125 -----------DQMVFH-GAFPDS-L----TYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEP 187 (274)
Q Consensus 125 -----------~~~~~~-~~~~~~-~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (274)
+.+... +..|.. . ...-.+-++...++..++++.|+.+...+.+....+-..+.++|...+.+
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 222221 111211 1 11234556777889999999999999887655556778899999999999
Q ss_pred HHHHHHHHHHHHCC-----CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC-----------cc--CH-HHHHHHH
Q 048737 188 EFAIEIWNYILENG-----ILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI-----------LI--YD-VTMQKLK 248 (274)
Q Consensus 188 ~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-----------~~--~~-~~~~~l~ 248 (274)
++|..+++.+.... ..++......|..+|...+++++|..+++.+.+... .| |- ..+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 99999999987643 123444457788999999999999999999987311 12 22 2334456
Q ss_pred HHHHhcChh--HHHHHHHHHHH
Q 048737 249 KAFYNESRS--MRDRFDSLERR 268 (274)
Q Consensus 249 ~~~~~~g~~--a~~~~~~~~~~ 268 (274)
..+.-.|+. |++.++.+...
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 677788888 88888888654
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.2e-11 Score=94.83 Aligned_cols=163 Identities=9% Similarity=0.003 Sum_probs=132.0
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048737 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 145 (274)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (274)
|...+.+-|.-.++.++|...|++..+.+ +.....|+.+.+-|....+...|++-++...+-. +.|-..|-.+.++
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN---p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN---PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC---cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 33344456667778899999999998876 5567788888888999999999999999888863 3477888899999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchH
Q 048737 146 LIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDV 225 (274)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 225 (274)
|.-.+.+.-|+-+|++..... +-|...|.+|.++|.+.+++++|+..|.+....|- .+...+..|...|-+.++..+|
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHH
Confidence 999998888999998887753 44678899999999999999999999988887653 4667888888999999999998
Q ss_pred HHHHHHHHh
Q 048737 226 RRFAEEMLN 234 (274)
Q Consensus 226 ~~~~~~m~~ 234 (274)
...|++.++
T Consensus 486 a~~yek~v~ 494 (559)
T KOG1155|consen 486 AQYYEKYVE 494 (559)
T ss_pred HHHHHHHHH
Confidence 888877655
No 44
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=6.2e-13 Score=100.06 Aligned_cols=224 Identities=8% Similarity=0.034 Sum_probs=108.5
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHH
Q 048737 33 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLC 112 (274)
Q Consensus 33 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (274)
+.+..+|.+.|.+.+|.+.|+..... .|-+.||..|-.+|.+..+++.|+.++.+-.+. .+-|+....-+.+.+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHHH
Confidence 34555555555555555555554442 344445555555555555555555555555443 1223322333444555
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHH
Q 048737 113 NNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIE 192 (274)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 192 (274)
..++.++|.++|+...+.. +.++....++...|.-.++++-|+.+|+++++.|+ -++..|..+.-+|...+++|.+..
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 5555555555555555432 22444444455555555555555555555555553 344455555555555555555555
Q ss_pred HHHHHHHCCCCcc--HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHH
Q 048737 193 IWNYILENGILPL--EASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDS 264 (274)
Q Consensus 193 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~ 264 (274)
-|.+....--.|+ ..+|-.+-......||+..|.+.|+-....+-. +...++.|.-.-.+.|+. |+.++..
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 5555444322222 234444444444555555555555554444322 334444444444455554 4444443
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=6.8e-11 Score=93.05 Aligned_cols=218 Identities=11% Similarity=0.089 Sum_probs=151.4
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHH-------------------------------HhccCcHHHHHHHHH
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLIT-------------------------------LIRGKQVDEALKFLR 53 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~-------------------------------~~~~~~~~~a~~~~~ 53 (274)
..++++|+.+|+++.+.....-+|..+|..++-. |+-.++.++|+..|+
T Consensus 275 ~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFk 354 (559)
T KOG1155|consen 275 QRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFK 354 (559)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHH
Confidence 4578888888888877644444566676554322 333366778888888
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 048737 54 VMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAF 133 (274)
Q Consensus 54 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 133 (274)
+..+.+ +-....|+.+.+-|....+...|..-|+++++.. |.|-..|-.|..+|.-.+.+.-|+-.|++..... +
T Consensus 355 RALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~---p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-P 429 (559)
T KOG1155|consen 355 RALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN---PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-P 429 (559)
T ss_pred HHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC---chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-C
Confidence 877754 3345677777888888888888888888888875 6778888888888888888888888888877742 2
Q ss_pred CChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-Cc-cHH
Q 048737 134 PDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN----GI-LP-LEA 207 (274)
Q Consensus 134 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~ 207 (274)
-|...|.+|..+|.+.++.++|++.|......| ..+...+..|.+.|-+.++.++|...|.+.++. |. .| ...
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k 508 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK 508 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 257788888888888888888888888877765 335567778888888888888888777766542 22 22 122
Q ss_pred HHHHHHHHHHhcCCcchHHHH
Q 048737 208 SANVLLVGLRNLGRLSDVRRF 228 (274)
Q Consensus 208 ~~~~l~~~~~~~g~~~~a~~~ 228 (274)
.--.|..-+.+.+++++|...
T Consensus 509 a~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 509 ARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred HHHHHHHHHHhhcchHHHHHH
Confidence 223344555666666666543
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.50 E-value=1.7e-10 Score=97.43 Aligned_cols=256 Identities=13% Similarity=0.130 Sum_probs=184.1
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHH
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTV 84 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (274)
.|++++|.+++.++... .|.+..+|.+|...|-+.|+.+++...+-..-.. .+-|...|-.+.....+.|+++.|.
T Consensus 152 rg~~eeA~~i~~EvIkq---dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQ---DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred hCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHH
Confidence 39999999999999877 8889999999999999999999998877555443 3567788999999999999999999
Q ss_pred HHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCCHhHHHHHHH
Q 048737 85 QLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS----LTYNMIFECLIKNKKVHEVENFFH 160 (274)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~ 160 (274)
-.|.++++.. +++....-.-+..|-+.|+...|...|.++.....+.|. ...-.+++.+...++-+.|.+.++
T Consensus 228 ~cy~rAI~~~---p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 228 YCYSRAIQAN---PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHhcC---CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999986 677777777788899999999999999998876331121 122334555666666677777776
Q ss_pred HHHhCC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH----------------------------------------
Q 048737 161 EMIKNE-WQPTPLNCATAITMLLDADEPEFAIEIWNYILE---------------------------------------- 199 (274)
Q Consensus 161 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------------------------------- 199 (274)
.....+ -..+...++.++..+.+...++.|......+..
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 665521 123344555555555555555555444443332
Q ss_pred ---------------------CC--CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCh
Q 048737 200 ---------------------NG--ILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256 (274)
Q Consensus 200 ---------------------~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 256 (274)
.. +.-+...|.-+..+|.+.|++.+|+.+|..+...-..-+...|..+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 22 1112355677778888888888888888888776544456677777778877776
Q ss_pred h--HHHHHHHHHH
Q 048737 257 S--MRDRFDSLER 267 (274)
Q Consensus 257 ~--a~~~~~~~~~ 267 (274)
. |.+.++.++.
T Consensus 465 ~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 465 YEEAIEFYEKVLI 477 (895)
T ss_pred HHHHHHHHHHHHh
Confidence 6 7777777664
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.49 E-value=1.4e-10 Score=90.78 Aligned_cols=231 Identities=6% Similarity=-0.105 Sum_probs=165.7
Q ss_pred ccchHHHHHHHHHHHhccCCCCch-HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhH
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (274)
.+..+.++.-+.++..+....|.+ ...|..+...+...|++++|...|++..+.. +.+...|+.+...+...|+++.|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 356677888888887643334433 5678888999999999999999999998864 44688999999999999999999
Q ss_pred HHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
...|++..+.. +.+..+|..+..++...|++++|.+.|++..+. .|+..........+...+++++|...+.+..
T Consensus 118 ~~~~~~Al~l~---P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLELD---PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999999865 445778888999999999999999999999875 3443322222233455678999999997765
Q ss_pred hCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC---CC---CccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 048737 164 KNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN---GI---LPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI 237 (274)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 237 (274)
... .|+...+ . ......|+...+ ..+..+.+. .+ +.....|..+...+.+.|++++|...|++..+.+
T Consensus 193 ~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~- 266 (296)
T PRK11189 193 EKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN- 266 (296)
T ss_pred hhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 432 3332222 2 223345666554 344444431 11 1123578889999999999999999999999775
Q ss_pred ccCHHHHHHH
Q 048737 238 LIYDVTMQKL 247 (274)
Q Consensus 238 ~~~~~~~~~l 247 (274)
+||..-+...
T Consensus 267 ~~~~~e~~~~ 276 (296)
T PRK11189 267 VYNFVEHRYA 276 (296)
T ss_pred CchHHHHHHH
Confidence 3355544443
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=3.4e-10 Score=85.34 Aligned_cols=248 Identities=10% Similarity=0.078 Sum_probs=186.0
Q ss_pred cccccchHHHHHHHHHHHhccCCCCc-hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 80 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (274)
|-+.|.+++|+++-..+.++.+..-. -..+...|..-|...|-+|.|..+|..+.+.+ ..-......|+..|....+|
T Consensus 79 fRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW 157 (389)
T COG2956 79 FRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREW 157 (389)
T ss_pred HHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHH
Confidence 45679999999999998875222110 12245567888999999999999999998865 33466788899999999999
Q ss_pred hhHHHHHHHHHhcCCccCcc----HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHH
Q 048737 81 THTVQLWDIMVGIGFNLMPN----LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVE 156 (274)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 156 (274)
++|..+-+++.+.+ -.+. ...|.-|...+....+.+.|..++.+..+... ..+..--.+.+.....|++++|.
T Consensus 158 ~KAId~A~~L~k~~--~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV 234 (389)
T COG2956 158 EKAIDVAERLVKLG--GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAV 234 (389)
T ss_pred HHHHHHHHHHHHcC--CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHH
Confidence 99999999998876 2332 23467777778888999999999999988632 24555556678889999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 048737 157 NFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 236 (274)
+.++...+.+..--+.+...|..+|...|++++....+.++.+....+ ..-..+...-....-.+.|...+.+-...
T Consensus 235 ~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r- 311 (389)
T COG2956 235 EALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA--DAELMLADLIELQEGIDAAQAYLTRQLRR- 311 (389)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--cHHHHHHHHHHHhhChHHHHHHHHHHHhh-
Confidence 999999987644445678899999999999999999999988854333 33344444334444456666666655555
Q ss_pred CccCHHHHHHHHHHHHhcChh
Q 048737 237 ILIYDVTMQKLKKAFYNESRS 257 (274)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~g~~ 257 (274)
+|+...+..+++.-....+.
T Consensus 312 -~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 312 -KPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred -CCcHHHHHHHHHhhhccccc
Confidence 69999999999877655433
No 49
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=8.6e-11 Score=92.55 Aligned_cols=219 Identities=11% Similarity=0.062 Sum_probs=155.2
Q ss_pred CcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHH
Q 048737 43 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFR 122 (274)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 122 (274)
|++++|.+.|.+............|+ +.-.+-..|++++|+..|-.+... +..+..+.-.+...|-...++..|++
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i---l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI---LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 67777777777776654333233333 233445677788888777776654 34566677777777888888888888
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048737 123 FFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI 202 (274)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 202 (274)
++-+.... ++.|+...+.|...|-+.|+-..|.+.+-.--+- .+-+..+...|...|....-+++++..|++..- +
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 87776654 4456777788888888888877777665433221 344667777777788888888888888877544 6
Q ss_pred CccHHHHHHHHHHH-HhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh-HHHHHHHHHHHhh
Q 048737 203 LPLEASANVLLVGL-RNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS-MRDRFDSLERRWK 270 (274)
Q Consensus 203 ~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~-a~~~~~~~~~~~~ 270 (274)
+|+..-|..++.+| .+.|++.+|+++++....+ ++-|.....-|++.+...|-. +.++-+++.+.-|
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d~key~~klek~ek 724 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKDAKEYADKLEKAEK 724 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 79999999988655 6779999999999998765 666888888899999888866 6666666654433
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=1.3e-10 Score=89.88 Aligned_cols=224 Identities=15% Similarity=0.080 Sum_probs=178.7
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCH-------HHHHHHHHHHHh
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-------KFFSNALDILVK 76 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~ 76 (274)
..|+++.|..-.+++.+. .|.++........+|.+.|+|..+..++..+.+.|.-.++ .+|..+++-...
T Consensus 165 ~~~d~~aA~~~v~~ll~~---~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 165 NRRDYPAARENVDQLLEM---TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred hCCCchhHHHHHHHHHHh---CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 467888888888888665 7878888999999999999999999999999988865554 367777777766
Q ss_pred CCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHH
Q 048737 77 LNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVE 156 (274)
Q Consensus 77 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 156 (274)
.+..+.-...|++.... ...++..-..++.-+.++|+.++|.++..+..+.+..|+ -...-.+.+.++...-+
T Consensus 242 ~~~~~gL~~~W~~~pr~---lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~ 314 (400)
T COG3071 242 DNGSEGLKTWWKNQPRK---LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLI 314 (400)
T ss_pred cccchHHHHHHHhccHH---hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHH
Confidence 67777766777777655 466777888889999999999999999999988876665 22333456777777777
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 048737 157 NFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 236 (274)
+..+.-.+. .+-++..+.+|...|.+.+.|.+|...|+...+ ..|+..+|+.+..+|.+.|+..+|.++.++....-
T Consensus 315 k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 315 KAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 777766554 234457889999999999999999999997766 45999999999999999999999999999876544
Q ss_pred CccC
Q 048737 237 ILIY 240 (274)
Q Consensus 237 ~~~~ 240 (274)
.+|+
T Consensus 392 ~~~~ 395 (400)
T COG3071 392 RQPN 395 (400)
T ss_pred cCCC
Confidence 4443
No 51
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=7.8e-10 Score=91.69 Aligned_cols=261 Identities=14% Similarity=0.131 Sum_probs=182.5
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-h-----
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV-K----- 76 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~----- 76 (274)
...|++++|++.++.-... -++...........+.+.|+.++|..++..+++++ |+...|...+..+. .
T Consensus 15 ~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 4578999999998876554 55466777888889999999999999999999875 55555544443333 1
Q ss_pred CCChhhHHHHHHHHHhcCCc----------cCc-------------------cHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 048737 77 LNDSTHTVQLWDIMVGIGFN----------LMP-------------------NLIMYNAVVGLLCNNNDVDNVFRFFDQM 127 (274)
Q Consensus 77 ~~~~~~a~~~~~~~~~~~~~----------~~~-------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (274)
..+.+....+|+++...-.. +.+ =+.+|+.|-..|....+.+-..+++...
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 12455566666666543200 000 1124455555555444444444555544
Q ss_pred Hhc----C----------CCCCh--hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCChHHH
Q 048737 128 VFH----G----------AFPDS--LTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT-PLNCATAITMLLDADEPEFA 190 (274)
Q Consensus 128 ~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 190 (274)
... + -+|+. .++..+.+.|...|++++|++++++.++. .|+ +..|..-.+.+-+.|++.+|
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 322 1 13344 34566788899999999999999999985 466 56788889999999999999
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHH--------HHHHHHHHhcChh--HHH
Q 048737 191 IEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTM--------QKLKKAFYNESRS--MRD 260 (274)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--------~~l~~~~~~~g~~--a~~ 260 (274)
.+.++.....+. -|...-+-.+..+.++|++++|.+++....+.+..|-...+ .....+|.+.|+. |.+
T Consensus 248 a~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 248 AEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999998775 56677777888899999999999999999877654433221 3355688888888 888
Q ss_pred HHHHHHHHhhh
Q 048737 261 RFDSLERRWKT 271 (274)
Q Consensus 261 ~~~~~~~~~~~ 271 (274)
.|..+.+.+..
T Consensus 327 ~~~~v~k~f~~ 337 (517)
T PF12569_consen 327 RFHAVLKHFDD 337 (517)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=7.5e-12 Score=105.30 Aligned_cols=224 Identities=13% Similarity=0.105 Sum_probs=158.1
Q ss_pred HHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhc
Q 048737 14 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGI 93 (274)
Q Consensus 14 ~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 93 (274)
++..+.. .|+.| +..+|..+|.-|+..|+++.|- +|..|.-...+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~-~gi~P-nRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 12 FLALHEI-SGILP-NRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred HHHHHHH-hcCCC-chhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 4556666 49999 8899999999999999999988 9999988777777778888888877777776664
Q ss_pred CCccCccHHhHHHHHHHHHhcCChhh---HHHHHHHH----HhcCC-----------------CCChhh----------H
Q 048737 94 GFNLMPNLIMYNAVVGLLCNNNDVDN---VFRFFDQM----VFHGA-----------------FPDSLT----------Y 139 (274)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~----~~~~~-----------------~~~~~~----------~ 139 (274)
.|...+|..|..+|...||... +.+.+... ...|+ -||..+ |
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLW 155 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHH
Confidence 3566688888888888877544 22211111 11111 112111 1
Q ss_pred HHHHHHHH---------------hcC--CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048737 140 NMIFECLI---------------KNK--KVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI 202 (274)
Q Consensus 140 ~~li~~~~---------------~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 202 (274)
..+++... +.. +..-.+++........-.|++.+|..++++-...|+.+.|..++.+|.+.|+
T Consensus 156 aqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 11111110 000 1111222222222221158999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCh
Q 048737 203 LPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR 256 (274)
Q Consensus 203 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 256 (274)
+.+..-|-.|+-+ .++..-+..+++-|.+.|+.|+..|+.-.+-.+.+.|.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888777777655 88888999999999999999999999998888877554
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.43 E-value=3.2e-10 Score=93.09 Aligned_cols=246 Identities=11% Similarity=0.099 Sum_probs=180.2
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcC-----C-CCCCHH-HHHHHHHHHHhCCChhhHHHHHHHHHhc----
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-----N-CFPTLK-FFSNALDILVKLNDSTHTVQLWDIMVGI---- 93 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 93 (274)
.|.-..+...+...|...|+++.|+.++.+..+. | ..|... ..+.+...|...+++++|..+|+++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3444556667999999999999999999987764 2 123332 3345777888999999999999998742
Q ss_pred -CCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-----C-CCCCh-hhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 048737 94 -GFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH-----G-AFPDS-LTYNMIFECLIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 94 -~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (274)
|.+.+.-..+++.|..+|.+.|++++|...+++..+- | ..|.+ ..++.+...|+..+++++|..++....+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3222334667888899999999999998888765431 1 12222 34667778899999999999999876542
Q ss_pred ---CCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHC-----C--CCccHHHHHHHHHHHHhcCCcchHHHHHHH
Q 048737 166 ---EWQPT----PLNCATAITMLLDADEPEFAIEIWNYILEN-----G--ILPLEASANVLLVGLRNLGRLSDVRRFAEE 231 (274)
Q Consensus 166 ---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 231 (274)
-..++ ..+++.|...|...|++++|.+++++.... | ..-....++.+...|.+.+++.+|.++|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 11222 357899999999999999999999987742 1 112245678888999999999999999888
Q ss_pred HHh----CCC--ccCHHHHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 232 MLN----RRI--LIYDVTMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 232 m~~----~~~--~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
... .|. +-...+|..|...|.+.|+. |.++.+.+.+.++
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 543 222 22346789999999999999 8888888876554
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=4.6e-11 Score=90.17 Aligned_cols=224 Identities=13% Similarity=0.127 Sum_probs=186.4
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|.+.|.+.+|.+-|+.-... .| -+.+|..|..+|.+-.++..|+.++.+-.+. ++.|........+.+-..++.+
T Consensus 233 ylrLgm~r~AekqlqssL~q---~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQ---FP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHhcChhhhHHHHHHHhhc---CC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHH
Confidence 55778899999999887765 66 6789999999999999999999999887764 4445555566778888889999
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHE 161 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (274)
+|.++|+...+.. +.++.....+...|.-.++++-|+.+|+++++.|+. +...|+.+.-+|...++++-++.-|.+
T Consensus 308 ~a~~lYk~vlk~~---~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 308 DALQLYKLVLKLH---PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHhcC---CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 9999999999875 667788888888888889999999999999999875 788899888889999999999999998
Q ss_pred HHhCCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 162 MIKNEWQPT--PLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 162 ~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
....-..|+ ...|-.+-......||+..|.+.|+-....+. -+...+|.|.-.-.+.|++++|..++......
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 887654454 35788888888889999999999998887664 56678888888888999999999999877654
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.40 E-value=1.5e-09 Score=78.23 Aligned_cols=191 Identities=13% Similarity=0.109 Sum_probs=88.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHH
Q 048737 32 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLL 111 (274)
Q Consensus 32 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (274)
...|.-.|.+.|+...|.+-+++.++.+ +-+..++..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~---p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA---PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---CCccchhhhhhHHH
Confidence 3344444555555555555555555432 2233444445555555555555555555555443 33444455555555
Q ss_pred HhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHH
Q 048737 112 CNNNDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFA 190 (274)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 190 (274)
|..|++++|...|++....-.-| -..+|..+.-+..+.|+++.|...|++.++.. +-...+...+.+...+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 55555555555555544331111 12344444444444555555555555544432 11233444444444555555555
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHH
Q 048737 191 IEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRF 228 (274)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 228 (274)
...++.....+. ++..+.-..|+.-...|+-+.+-+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 555544444433 4444444444444444444444443
No 56
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=5.2e-10 Score=80.52 Aligned_cols=201 Identities=9% Similarity=-0.007 Sum_probs=169.2
Q ss_pred CcccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh
Q 048737 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 80 (274)
Q Consensus 1 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (274)
+|.+.|+...|.+-+++..+. .|.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....+|..|.+
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~---DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEH---DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCCh
Confidence 477899999999999999776 89899999999999999999999999999998853 44567889999999999999
Q ss_pred hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 048737 81 THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFH 160 (274)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (274)
++|...|++....-. +..-..+|..+.-+..+.|+.+.|...|++.++... -...+.-.+.......|++..|..+++
T Consensus 120 ~eA~q~F~~Al~~P~-Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 120 EEAMQQFERALADPA-YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHHHHHHHHHHhCCC-CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHHH
Confidence 999999999987531 333467899999999999999999999999988642 246778888999999999999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHH
Q 048737 161 EMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASAN 210 (274)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 210 (274)
.....+. ++..+.-..|+.-...|+-+.+-+.=..+... + |...-|.
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~-f-P~s~e~q 244 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL-F-PYSEEYQ 244 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-C-CCcHHHH
Confidence 9988764 88888888889889999999888766666553 3 5444443
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=2.6e-10 Score=90.45 Aligned_cols=219 Identities=11% Similarity=0.125 Sum_probs=176.5
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhH
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (274)
-.|+.-.|.+-|+..... .|.+...|--+...|+...+.++....|+.....+ +-++.+|..-.....-.++++.|
T Consensus 338 L~g~~~~a~~d~~~~I~l---~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKL---DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hcCCchhhhhhHHHHHhc---CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 357888899999988665 66556568888899999999999999999988764 45677888888888888999999
Q ss_pred HHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
..=|+..+... +.+...|-.+.-+..+.++++++...|++..++ ++--+..|+.....+...+++++|.+.|+..+
T Consensus 414 ~aDF~Kai~L~---pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 414 IADFQKAISLD---PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHhhcC---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 99999999876 556778888888888999999999999999876 55558899999999999999999999999988
Q ss_pred hCCCCCC-------cchH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 164 KNEWQPT-------PLNC--ATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 164 ~~~~~~~-------~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
+. .|+ ...+ -.++.. .=.+++..|..++++..+.+. -....|..|...-.+.|+.++|+++|++-..
T Consensus 490 ~L--E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 490 EL--EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hh--ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 74 233 1111 111111 123899999999999988764 3457889999999999999999999998654
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=9.1e-10 Score=86.23 Aligned_cols=196 Identities=12% Similarity=-0.017 Sum_probs=142.6
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|.+.|+.++|...|++..+. .|+++.+|+.+...+...|++++|+..|++..+.. +-+..++..+..++...|+++
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~ 149 (296)
T PRK11189 74 YDSLGLRALARNDFSQALAL---RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYE 149 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 45679999999999999765 89899999999999999999999999999998753 334678888899999999999
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHE 161 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (274)
+|.+.|++..+.. |+..............++.++|...|.+.... ..|+...+ .......|+...+ ..+..
T Consensus 150 eA~~~~~~al~~~----P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~---~~~~~~lg~~~~~-~~~~~ 220 (296)
T PRK11189 150 LAQDDLLAFYQDD----PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW---NIVEFYLGKISEE-TLMER 220 (296)
T ss_pred HHHHHHHHHHHhC----CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH---HHHHHHccCCCHH-HHHHH
Confidence 9999999999865 43222222233345567899999999775543 22332222 2233345666554 35555
Q ss_pred HHhCC-----CCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHH
Q 048737 162 MIKNE-----WQP-TPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANV 211 (274)
Q Consensus 162 ~~~~~-----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 211 (274)
+.+.. ..| ....|..+...+.+.|++++|...|++..+.++ |+..-+..
T Consensus 221 ~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~~~ 275 (296)
T PRK11189 221 LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEHRY 275 (296)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHHHH
Confidence 54321 111 235788999999999999999999999998764 45444443
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.34 E-value=5.8e-10 Score=91.59 Aligned_cols=231 Identities=13% Similarity=0.087 Sum_probs=171.5
Q ss_pred cccccchHHHHHHHHHHHhc----cCCCCchHh-HHHHHHHHHhccCcHHHHHHHHHHHhcC---CCCCC----HHHHHH
Q 048737 2 WEKEGNVVEANKTFGEMVER----FEWNPEHVL-AYETFLITLIRGKQVDEALKFLRVMKGE---NCFPT----LKFFSN 69 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~----~~~~p~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~ 69 (274)
|+..|+++.|+.++++..+. .|.....+. ..+.+...|...+++++|..+|+++... ..-++ ..+++.
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n 288 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN 288 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 67889999999999876542 232222333 3445788899999999999999998752 11122 456777
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhc-----CCccCccH-HhHHHHHHHHHhcCChhhHHHHHHHHHhc---CCCCC----h
Q 048737 70 ALDILVKLNDSTHTVQLWDIMVGI-----GFNLMPNL-IMYNAVVGLLCNNNDVDNVFRFFDQMVFH---GAFPD----S 136 (274)
Q Consensus 70 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~ 136 (274)
|..+|.+.|++++|...++++.+. +. ..|.+ ..++.+...+...+++++|..+++...+. -+.++ .
T Consensus 289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a 367 (508)
T KOG1840|consen 289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLA 367 (508)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHH
Confidence 888899999999999888887642 10 12333 34677778899999999999999876542 12222 4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhC----CC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHH----CCC--C
Q 048737 137 LTYNMIFECLIKNKKVHEVENFFHEMIKN----EW--QP-TPLNCATAITMLLDADEPEFAIEIWNYILE----NGI--L 203 (274)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~--~ 203 (274)
.+++.|...|...|++++|.+++++.+.. +- .+ ....++.+...|.+.+.++.|.++|.+... .|. +
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 67899999999999999999999998653 11 12 234678888999999999999999887553 232 2
Q ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 048737 204 PLEASANVLLVGLRNLGRLSDVRRFAEEML 233 (274)
Q Consensus 204 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 233 (274)
-...+|..|...|...|++++|.++.+...
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 235779999999999999999999988875
No 60
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.32 E-value=8.9e-09 Score=87.38 Aligned_cols=247 Identities=12% Similarity=0.054 Sum_probs=136.3
Q ss_pred cchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHH----HHHHHHHHhCCChh
Q 048737 6 GNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF----SNALDILVKLNDST 81 (274)
Q Consensus 6 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~ 81 (274)
|.+++|.-.|.+..+. .|.+...+-.-+..|-+.|+...|.+-|.++.+..-+.|..-+ ...++.+...++-+
T Consensus 221 ~~i~qA~~cy~rAI~~---~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQA---NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred ccHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 4444555555544433 4444444444444555555555555555555443211111111 12234444444455
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---------------------------
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP--------------------------- 134 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------------- 134 (274)
.|.+.++.....+. -..+...+++++..|.+..+++.|......+......+
T Consensus 298 ~a~~~le~~~s~~~-~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 298 RAAKALEGALSKEK-DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHhhcc-ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 55555555544211 13344556667777777777777766665554311111
Q ss_pred ------------------------------------ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHH
Q 048737 135 ------------------------------------DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAI 178 (274)
Q Consensus 135 ------------------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 178 (274)
+...|.-+..+|...|++.+|+.+|..+......-+...|-.+.
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 11233455566777777777777777777654444556777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHh--------CCCccCHHHHHHHHHH
Q 048737 179 TMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN--------RRILIYDVTMQKLKKA 250 (274)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--------~~~~~~~~~~~~l~~~ 250 (274)
.+|...|..+.|.+.|...+.... .+...--.|...+.+.|+.++|.+++..+.. .+..|+..........
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 777777777777777777776542 3445555566667777888877777777542 2345555555555566
Q ss_pred HHhcChh
Q 048737 251 FYNESRS 257 (274)
Q Consensus 251 ~~~~g~~ 257 (274)
+.+.|+.
T Consensus 536 l~~~gk~ 542 (895)
T KOG2076|consen 536 LFQVGKR 542 (895)
T ss_pred HHHhhhH
Confidence 6666654
No 61
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.32 E-value=1.1e-08 Score=82.53 Aligned_cols=260 Identities=9% Similarity=-0.019 Sum_probs=158.7
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHH---HHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYET---FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 79 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (274)
...|++++|.+.+++..+. .|++...+.. ........+..+.+.+.+... ....+........+...+...|+
T Consensus 54 ~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 54 WIAGDLPKALALLEQLLDD---YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHcCCHHHHHHHHHHHHHH---CCCcHHHHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCC
Confidence 4568899999999988776 7767666552 222223345555666665541 11122233444566677888999
Q ss_pred hhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCCh--hhHHHHHHHHHhcCCHhHHH
Q 048737 80 STHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGA-FPDS--LTYNMIFECLIKNKKVHEVE 156 (274)
Q Consensus 80 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~ 156 (274)
++.|...+++..+.. +.+...+..+..++...|++++|...+++...... .|+. ..|..+...+...|++++|.
T Consensus 130 ~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 130 YDRAEEAARRALELN---PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred HHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999875 55677788888999999999999999998876532 1222 34556788889999999999
Q ss_pred HHHHHHHhCCC-CCCcchH-H--HHHHHHHhcCChHHHHHH--H-HHHHHCCC-CccHHHHHHHHHHHHhcCCcchHHHH
Q 048737 157 NFFHEMIKNEW-QPTPLNC-A--TAITMLLDADEPEFAIEI--W-NYILENGI-LPLEASANVLLVGLRNLGRLSDVRRF 228 (274)
Q Consensus 157 ~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~ 228 (274)
.++++...... .+..... + .++..+...|..+.+.++ + ........ ............++...|+.++|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 99998864321 1111111 1 233334444544433333 1 11111100 11112222466677888999999999
Q ss_pred HHHHHhCCCc------cCHHHHHHHHH--HHHhcChh--HHHHHHHHHHHh
Q 048737 229 AEEMLNRRIL------IYDVTMQKLKK--AFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 229 ~~~m~~~~~~------~~~~~~~~l~~--~~~~~g~~--a~~~~~~~~~~~ 269 (274)
++.+...... ....+-..++. ++...|+. |.+.+..++...
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9888663222 11122222333 33466766 888887777655
No 62
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.28 E-value=1.6e-09 Score=92.54 Aligned_cols=236 Identities=9% Similarity=0.051 Sum_probs=186.5
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHH
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTV 84 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (274)
.++++.|.+.|..+... .|.-+..|-.+.......+...+|..+++.....+ ..++..+..+...+.+...+..|.
T Consensus 509 l~~~~~A~e~Yk~Ilke---hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 509 LHDTEVAEEMYKSILKE---HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred hhhhhHHHHHHHHHHHH---CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccc
Confidence 46788999999999887 88667777777755566688999999999988753 556677777888999999999999
Q ss_pred HHHHHHHhcCCccCccHHhHHHHHHHHHh------------cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 048737 85 QLWDIMVGIGFNLMPNLIMYNAVVGLLCN------------NNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKV 152 (274)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 152 (274)
+-|+.+.+.-. ..+|..+.-.|.+.|.+ .+..++|+++|.+.++..+ .|..+-|-+...+...|++
T Consensus 585 k~f~~i~~~~~-~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 585 KKFETILKKTS-TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred cHHHHHHhhhc-cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCc
Confidence 98888776542 23566666666665553 2456889999999988743 4788888898999999999
Q ss_pred hHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHhcCCcchHHHHHHH
Q 048737 153 HEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN-GILPLEASANVLLVGLRNLGRLSDVRRFAEE 231 (274)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 231 (274)
.+|..+|.+.++... -+..+|..+.++|...|++..|++.|+...+. ...-+..+.+.|.+++.+.|++.+|.+.+..
T Consensus 663 ~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 663 SEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred hHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999998753 35668899999999999999999999987764 4455678889999999999999999999888
Q ss_pred HHhCCCccCHHHHHHH
Q 048737 232 MLNRRILIYDVTMQKL 247 (274)
Q Consensus 232 m~~~~~~~~~~~~~~l 247 (274)
.......-....|+..
T Consensus 742 a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 742 ARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHhCCccchHHhHHH
Confidence 7776544444445543
No 63
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.26 E-value=3.9e-08 Score=81.14 Aligned_cols=255 Identities=10% Similarity=-0.036 Sum_probs=194.7
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|.+.+.++-|..+|....+- .|.+...|...+..--..|..++...+|++.... ++-....|......+-..|++.
T Consensus 526 ~~k~~~~~carAVya~alqv---fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~ 601 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQV---FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVP 601 (913)
T ss_pred HHhcchHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcH
Confidence 44566777788888877554 7777778888877777788888888888888875 4445556666667777789999
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHE 161 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (274)
.|..++.++.+.. +.+...|..-+..-....+++.|..+|.+.... .|+...|.--+..-...++.++|.+++++
T Consensus 602 ~ar~il~~af~~~---pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 602 AARVILDQAFEAN---PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred HHHHHHHHHHHhC---CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 9999999998875 557788888899999999999999999988764 57777887777777777888999999988
Q ss_pred HHhCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccC
Q 048737 162 MIKNEWQPT-PLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240 (274)
Q Consensus 162 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 240 (274)
.++. -|+ ...|..+.+.+-+.++++.|...|..-.+. .+-.+..|-.+...--+.|..-.|..+++...-++.. +
T Consensus 677 ~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~ 752 (913)
T KOG0495|consen 677 ALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-N 752 (913)
T ss_pred HHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-c
Confidence 8774 355 346777778888888888888887654432 3334566777777777888888999999888776533 6
Q ss_pred HHHHHHHHHHHHhcChh--HHHHHHHHHHHh
Q 048737 241 DVTMQKLKKAFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 241 ~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 269 (274)
...|...|+.=.+.|.. |+.+..++++..
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77888888888888877 777777666554
No 64
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.26 E-value=1.3e-08 Score=90.12 Aligned_cols=232 Identities=10% Similarity=0.108 Sum_probs=188.5
Q ss_pred HHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHHhCCChhhHHHHHH
Q 048737 14 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-----LKFFSNALDILVKLNDSTHTVQLWD 88 (274)
Q Consensus 14 ~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~ 88 (274)
=|+++... .|++...|-..+....+.++.++|.+++++.+.. +.+. ...|.++++.-..-|.-+...++|+
T Consensus 1446 Dferlvrs---sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1446 DFERLVRS---SPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred HHHHHHhc---CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 34454444 7878889999999999999999999999999864 3332 3467778887777788899999999
Q ss_pred HHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 048737 89 IMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQ 168 (274)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 168 (274)
++.+.. ....+|..|...|.+.++.++|.++++.|.+. +.-....|...+..+.+..+-++|..++.+.++. -
T Consensus 1522 RAcqyc----d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--l 1594 (1710)
T KOG1070|consen 1522 RACQYC----DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--L 1594 (1710)
T ss_pred HHHHhc----chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--c
Confidence 999854 34567899999999999999999999999886 4457889999999999999999999999998874 3
Q ss_pred CC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCH--HH
Q 048737 169 PT---PLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYD--VT 243 (274)
Q Consensus 169 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~ 243 (274)
|. .......+..-.+.|+.+.+..+|+......+ --...|+.++..-.++|+.+.+..+|++.+..++.|-. ..
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKff 1673 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFF 1673 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHH
Confidence 43 33445556666789999999999999887643 45679999999999999999999999999999887754 44
Q ss_pred HHHHHHHHHhcChh
Q 048737 244 MQKLKKAFYNESRS 257 (274)
Q Consensus 244 ~~~l~~~~~~~g~~ 257 (274)
|...+.-=.+.|+.
T Consensus 1674 fKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1674 FKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHHHHHHHHhcCch
Confidence 55666655566665
No 65
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.24 E-value=4.3e-08 Score=80.91 Aligned_cols=252 Identities=10% Similarity=0.045 Sum_probs=183.3
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhh
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (274)
...|++..|..++.+..+. .|.+...|..-+.....+.++++|..+|.+... ..|+...|.--++.---.++.++
T Consensus 595 w~agdv~~ar~il~~af~~---~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEA---NPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HhcCCcHHHHHHHHHHHHh---CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHH
Confidence 3568888888888888554 787888888888888999999999999988776 45777777777777777788888
Q ss_pred HHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 048737 83 TVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
|.+++++.++.- +.-.-.|-.+...+-+.++.+.|.+.|..-.+. ++-.+..|..+...=.+.|.+-.|..++++.
T Consensus 670 A~rllEe~lk~f---p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 670 ALRLLEEALKSF---PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHhC---CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 888888888763 333556777778888888888888888776554 3334666777777777778888888888887
Q ss_pred HhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-------------------------CccHHHHHHHH
Q 048737 163 IKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN----GI-------------------------LPLEASANVLL 213 (274)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-------------------------~~~~~~~~~l~ 213 (274)
+-.+ +-+...|-..|+.-.+.|+.+.|..+..+..+. |+ .-|..+.-.+.
T Consensus 746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia 824 (913)
T KOG0495|consen 746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIA 824 (913)
T ss_pred HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHH
Confidence 7654 456778888888888888888888776665432 11 22345555666
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHH
Q 048737 214 VGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSL 265 (274)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~ 265 (274)
..|-...++++|.+.|.+..+.+-. +-.+|..+..-..+.|.. -.+++...
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6677778888888888888776422 446777777777777743 44444443
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=6.4e-09 Score=84.06 Aligned_cols=222 Identities=10% Similarity=-0.001 Sum_probs=144.3
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhH
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMY 104 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (274)
.|..+.+|-++.-.|...|+.++|.+.|.+...-+ +.=...|....+.++..+..++|...|..+.+.- +-....+
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~---~G~hlP~ 383 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM---PGCHLPS 383 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc---cCCcchH
Confidence 45555666666666666666666666666554322 1112345566666666666666666666655431 1111122
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC--CC---C-CCcchHHHHH
Q 048737 105 NAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN--EW---Q-PTPLNCATAI 178 (274)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~---~-~~~~~~~~l~ 178 (274)
--+.--|.+.++.+.|.++|.+.... .+-|+...+.+.-.....+.+.+|..+|...+.. .+ + .-..+++.|.
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLG 462 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLG 462 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHH
Confidence 22333466677777888888777664 2335677777766666777888888888877621 01 1 1234678888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhc
Q 048737 179 TMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNE 254 (274)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 254 (274)
.+|.+.+.+++|+..+++..... +.+..++.++.-.|...|+++.|.+.|.+..- +.|+..+...++..+...
T Consensus 463 H~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 463 HAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHHh
Confidence 88889999999999888888764 36777888888888888999999998887664 477777777777665544
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=9.8e-09 Score=83.02 Aligned_cols=253 Identities=11% Similarity=0.030 Sum_probs=196.9
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhH
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (274)
..+++.+..++++.+.+. .|.....+..-|..+...|+..+...+=.++.+. .|-.+.+|-++.--|.-.|...+|
T Consensus 256 ~~c~f~~c~kit~~lle~---dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEK---DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HcChHHHHHHHhHHHHhh---CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHH
Confidence 457889999999998776 5556667777778888889888888887888775 355678899998888888999999
Q ss_pred HHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
++.|.+....+ +.=...|-.+..+|.-.+.-|.|...+...-+. ++-...-+--+.--|.+.++.+-|.++|....
T Consensus 332 Rry~SKat~lD---~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 332 RRYFSKATTLD---PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHhhcC---ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999998765 233568999999999999999999998877653 22222223334456888999999999999887
Q ss_pred hCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC----C--CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 048737 164 KNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN----G--ILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI 237 (274)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 237 (274)
... +.|+...+-+.-.....+.+.+|..+|+..+.. + ..--..+++.|-.+|.+.+.+++|+..+++.+...
T Consensus 408 ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~- 485 (611)
T KOG1173|consen 408 AIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS- 485 (611)
T ss_pred hcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-
Confidence 642 345677777777777789999999999887631 1 11244678899999999999999999999988774
Q ss_pred ccCHHHHHHHHHHHHhcChh--HHHHHHHHH
Q 048737 238 LIYDVTMQKLKKAFYNESRS--MRDRFDSLE 266 (274)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~ 266 (274)
+-+..+|.++.-.+...|+. |.+.|.+.+
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44888999998888888887 777666554
No 68
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=3.9e-09 Score=83.45 Aligned_cols=207 Identities=14% Similarity=0.124 Sum_probs=165.4
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhH
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (274)
..|++++|.+.|.+.... ....+.+...+.-.+-..|+.++|++.|-++..- +.-+...+..+.+.|-...+...|
T Consensus 502 ~ngd~dka~~~ykeal~n---dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNN---DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred ecCcHHHHHHHHHHHHcC---chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHH
Confidence 368999999999998775 2223334444555677889999999999887653 334677778888899999999999
Q ss_pred HHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
.+++-+.... ++.|+.+.+.|...|-+.|+...|...+-+--.- ++-+..+..-|...|....-+++++.+|++..
T Consensus 578 ie~~~q~~sl---ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 578 IELLMQANSL---IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHhccc---CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999888765 5778999999999999999999999876554433 45577888888888888888999999999876
Q ss_pred hCCCCCCcchHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 048737 164 KNEWQPTPLNCATAITMLL-DADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGR 221 (274)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 221 (274)
- +.|+..-|..++..|. +.|++.+|.++|+..... ++-|......|++.+...|.
T Consensus 654 l--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 654 L--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred h--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 5 6799999998876664 579999999999988764 66788888889888877764
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=3.2e-08 Score=82.28 Aligned_cols=227 Identities=17% Similarity=0.148 Sum_probs=161.0
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhcc-----CcHHHHHHHHHHHhcCC---CCC-----------
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRG-----KQVDEALKFLRVMKGEN---CFP----------- 62 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~---~~~----------- 62 (274)
|.+.|+.++|..+|..+.++ .|+|...|..+..+..-. .+.+...++|+++...- ..|
T Consensus 48 l~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~ 124 (517)
T PF12569_consen 48 LLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGD 124 (517)
T ss_pred HHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHH
Confidence 45789999999999999888 998888888888777332 35677778887775431 001
Q ss_pred -----------------CHHHHHHHHHHHHhCCChhhHHHHHHHHHhc----CC--------ccCccHH--hHHHHHHHH
Q 048737 63 -----------------TLKFFSNALDILVKLNDSTHTVQLWDIMVGI----GF--------NLMPNLI--MYNAVVGLL 111 (274)
Q Consensus 63 -----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--------~~~~~~~--~~~~l~~~~ 111 (274)
-+.+|..|-..|......+-..+++...... +. .-+|+.. ++.-+...|
T Consensus 125 ~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy 204 (517)
T PF12569_consen 125 EFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY 204 (517)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH
Confidence 1123334444444333444444555544322 10 1234443 446667889
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHH
Q 048737 112 CNNNDVDNVFRFFDQMVFHGAFPD-SLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFA 190 (274)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 190 (274)
...|++++|++++++..+. .|+ +..|..-...+-+.|++.+|.+.++..++.. .-|...-+-.+..+.+.|++++|
T Consensus 205 d~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A 281 (517)
T PF12569_consen 205 DYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEA 281 (517)
T ss_pred HHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999886 455 7788899999999999999999999998865 35666777788899999999999
Q ss_pred HHHHHHHHHCCCCccH--------HHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 191 IEIWNYILENGILPLE--------ASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 191 ~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
..++......+..|.. ........+|.+.|++..|+.-|..+.+
T Consensus 282 ~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 282 EKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999988876643332 1224456788999999988877666544
No 70
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=7.6e-08 Score=76.66 Aligned_cols=251 Identities=10% Similarity=0.098 Sum_probs=189.8
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChhhH
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHT 83 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 83 (274)
.+++..|..+|++.... ...+...|..-+..-.+++++..|..++++.... -|. ...|--.+..=-..|++..|
T Consensus 86 q~e~~RARSv~ERALdv---d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDV---DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHHHHHHHHHHHHHHhc---ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHH
Confidence 46788999999998664 4557888999999999999999999999998864 343 33455556666678999999
Q ss_pred HHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
.++|++..+ ..|+...|++.++.=.+-...+.|..+|++..- +.|++.+|......=.+.|+...+..+|+..+
T Consensus 161 RqiferW~~----w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 161 RQIFERWME----WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHc----CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999998 469999999999999999999999999999987 46999999999999999999999999999987
Q ss_pred hC-CC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcc--HHHHHHHHHHHHhcCCcchHHHH--------HHH
Q 048737 164 KN-EW-QPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPL--EASANVLLVGLRNLGRLSDVRRF--------AEE 231 (274)
Q Consensus 164 ~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~--------~~~ 231 (274)
+. |- .-+...+.++..-=..+..++.|..+|+..++.-. .+ ...|..+...--+.|+.....+. ++.
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~p-k~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIP-KGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 64 21 11223444444444566788899999988887532 22 34555555554555665544443 444
Q ss_pred HHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHH
Q 048737 232 MLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLERR 268 (274)
Q Consensus 232 m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 268 (274)
+.+.+ +.|..+|--.++.-...|+. .+++++.++..
T Consensus 314 ~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 314 EVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred HHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 44443 45777777788877777776 78888877754
No 71
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.17 E-value=9.7e-08 Score=81.98 Aligned_cols=259 Identities=11% Similarity=0.013 Sum_probs=164.3
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccC---cHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK---QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 79 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (274)
.+.|+.+.|+..|.+..+- .|.++.++..|.-.-.... .+..+..++...-..+ +-++...+.|.+.|.-.|+
T Consensus 210 ~kl~~~~~a~~a~~ralqL---dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 210 WKLGMSEKALLAFERALQL---DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKD 285 (1018)
T ss_pred HhccchhhHHHHHHHHHhc---ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhccc
Confidence 3556666666666666443 5555555444443333222 3344444444444322 3456667777788888888
Q ss_pred hhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 048737 80 STHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFF 159 (274)
Q Consensus 80 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 159 (274)
+..+..+...+.....+-..-...|-.+.++|-..|++++|...|.+..+....--+..+.-+.+.|.+.|+++.+...|
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHH
Confidence 88888888877765311112244577788888888888888888888776532211344556778888888888888888
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHH---
Q 048737 160 HEMIKNEWQPTPLNCATAITMLLDAD----EPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEM--- 232 (274)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m--- 232 (274)
+...+.. +.+..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+...+-...- ..++.+|...
T Consensus 366 Ekv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~ 442 (1018)
T KOG2002|consen 366 EKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDI 442 (1018)
T ss_pred HHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHH
Confidence 8887753 334566666766666664 4566777776666644 3556667666666554433 3336655544
Q ss_pred -HhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHH
Q 048737 233 -LNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLERR 268 (274)
Q Consensus 233 -~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 268 (274)
...+-.+.+...+.+.......|.+ |...|......
T Consensus 443 L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 443 LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 3455567778888888888888887 77777777665
No 72
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.15 E-value=8.5e-09 Score=79.91 Aligned_cols=243 Identities=14% Similarity=0.103 Sum_probs=160.2
Q ss_pred ccchHHHHHHHHHHHhccCCCC-chHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhH
Q 048737 5 EGNVVEANKTFGEMVERFEWNP-EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (274)
.|.+..++.-.+ .... .| .+.....-+.+++...|+++.++ .+..... .|.......+...+...++-+.+
T Consensus 14 ~G~Y~~~i~e~~-~~~~---~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKSF---SPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp TT-HHHHCHHHH-CHTS---TCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred hhhHHHHHHHhh-ccCC---CchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 577888876655 3221 22 24455667788899999887554 4443333 66666666565555444555555
Q ss_pred HHHHHHHHhcCCccC-ccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 048737 84 VQLWDIMVGIGFNLM-PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 84 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
..-++...... .. .+..........+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|
T Consensus 86 l~~l~~~~~~~--~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 86 LEELKELLADQ--AGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp HHHHHHCCCTS-----CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhc--cccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555444333 22 23333333445677889999999988653 36677788899999999999999999999
Q ss_pred HhCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 048737 163 IKNEWQPTPLNCATAITMLLD----ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRIL 238 (274)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 238 (274)
.+.. +..+...+..++.. .+.+..|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+.
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~- 232 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP- 232 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-
Confidence 8742 34455555555543 34689999999998664 567888999999999999999999999999877653
Q ss_pred cCHHHHHHHHHHHHhcChh---HHHHHHHHHHH
Q 048737 239 IYDVTMQKLKKAFYNESRS---MRDRFDSLERR 268 (274)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~---a~~~~~~~~~~ 268 (274)
-++.|...++-+....|+. +.+.+.++.+.
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3566777777777777766 66666665544
No 73
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=2.7e-07 Score=73.62 Aligned_cols=257 Identities=14% Similarity=0.121 Sum_probs=155.1
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHH
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTV 84 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (274)
.|++..|.++|++..+ ..| +..+|++.|+.-.+-+.++.|..++++..- +.|+..+|.-....=.+.|+...+.
T Consensus 154 LgNi~gaRqiferW~~---w~P-~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME---WEP-DEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred hcccHHHHHHHHHHHc---CCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 4788999999998854 489 899999999999999999999999998875 4588777766655555555555555
Q ss_pred HHHHHHHhcC----------------------------------------------------------------------
Q 048737 85 QLWDIMVGIG---------------------------------------------------------------------- 94 (274)
Q Consensus 85 ~~~~~~~~~~---------------------------------------------------------------------- 94 (274)
.+|+.+++.-
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 5555444320
Q ss_pred --------CccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh--hhHHHH--------HHHHHhcCCHhHHH
Q 048737 95 --------FNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS--LTYNMI--------FECLIKNKKVHEVE 156 (274)
Q Consensus 95 --------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l--------i~~~~~~~~~~~a~ 156 (274)
..-+.|-.+|--.++.-...|+.+...++|++.... ++|-. ..|... +-.=....+++.+.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 011234556666666666778888888888887654 44421 111111 11112344555555
Q ss_pred HHHHHHHh------------------------------------CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048737 157 NFFHEMIK------------------------------------NEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN 200 (274)
Q Consensus 157 ~~~~~~~~------------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (274)
++|...++ .|..|-..+|...|..=.+.+++|.+..++.+.++.
T Consensus 387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 55554443 133444445555555555566666666666666665
Q ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC-CccCHHHHHHHHHHHHhcChh--HHHHHHHHHHHh
Q 048737 201 GILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR-ILIYDVTMQKLKKAFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 269 (274)
++ -|-.+|......-...|+.|.|..+|+-.+.+. .......+.+.|+-=...|.. |+.+++.++++-
T Consensus 467 ~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 467 SP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred Ch-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 53 344556666555566666777766666665542 112223344444444455555 666666666543
No 74
>PLN02789 farnesyltranstransferase
Probab=99.14 E-value=1.3e-07 Score=74.38 Aligned_cols=205 Identities=10% Similarity=0.076 Sum_probs=136.5
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccC-cHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh--
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK-QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS-- 80 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 80 (274)
..++.++|+.+.+++.+. .|.+..+|+....++...| .+++++..++++.+.+ +-+..+|+...-.+.+.+..
T Consensus 49 ~~e~serAL~lt~~aI~l---nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 49 SDERSPRALDLTADVIRL---NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred cCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 456777888888877655 7777778877777777776 5788888888887753 33455566554445555542
Q ss_pred hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---CCH----h
Q 048737 81 THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN---KKV----H 153 (274)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~----~ 153 (274)
+.+..+++.+++.. +-|..+|+....++.+.|+++++++.++++++.++. |..+|+.....+.+. |.. +
T Consensus 125 ~~el~~~~kal~~d---pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 125 NKELEFTRKILSLD---AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred HHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 56777887888765 567788888888888888888888888888876543 566676665555443 222 3
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 048737 154 EVENFFHEMIKNEWQPTPLNCATAITMLLDA----DEPEFAIEIWNYILENGILPLEASANVLLVGLRN 218 (274)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (274)
+...+..+++... +-|...|+.+...+... +...+|...+.+....++ .+......|+..|+.
T Consensus 201 ~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 5666666666543 34566777777777663 334557777776665442 455667777777765
No 75
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=5.3e-08 Score=77.70 Aligned_cols=226 Identities=10% Similarity=0.044 Sum_probs=178.3
Q ss_pred HHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCC
Q 048737 37 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNND 116 (274)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 116 (274)
..+.-.|+.-.|..-|+..+...- .+...|.-+...|...++.++..+.|+...+.+ +.|+.+|..-...+.-.++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld---p~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD---PENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC---CCCCchhHhHHHHHHHHHH
Confidence 344556888899999999887642 233347788889999999999999999999987 6678889988999999999
Q ss_pred hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048737 117 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNY 196 (274)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (274)
+++|..=|++.....+ -+...|..+..+..+.++++++...|++.++. .+..+..|+.....+...++++.|.+.|+.
T Consensus 410 ~e~A~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 9999999999988532 25778888888888999999999999999875 344578999999999999999999999999
Q ss_pred HHHCCCC-------ccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHH
Q 048737 197 ILENGIL-------PLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLER 267 (274)
Q Consensus 197 ~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 267 (274)
.++.... +.+.+.-.++..- =.+++..|..++++.++.... ....|.+|.+.-.+.|+. |.++|++...
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8864321 1122222232222 238999999999999987644 446789999999999988 9999998765
Q ss_pred Hhh
Q 048737 268 RWK 270 (274)
Q Consensus 268 ~~~ 270 (274)
.-+
T Consensus 566 lAr 568 (606)
T KOG0547|consen 566 LAR 568 (606)
T ss_pred HHH
Confidence 544
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.13 E-value=3.1e-07 Score=74.19 Aligned_cols=92 Identities=12% Similarity=0.006 Sum_probs=41.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCc--chHHHHHHHHH
Q 048737 106 AVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEW-QPTP--LNCATAITMLL 182 (274)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~ 182 (274)
.+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..++.+.....- .|+. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 33444455555555555555554432 12233444444555555555555555554443211 1111 12223444455
Q ss_pred hcCChHHHHHHHHHHH
Q 048737 183 DADEPEFAIEIWNYIL 198 (274)
Q Consensus 183 ~~~~~~~a~~~~~~~~ 198 (274)
..|++++|..++++..
T Consensus 198 ~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 198 ERGDYEAALAIYDTHI 213 (355)
T ss_pred HCCCHHHHHHHHHHHh
Confidence 5555555555555543
No 77
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.09 E-value=6.6e-08 Score=71.23 Aligned_cols=160 Identities=11% Similarity=0.004 Sum_probs=94.1
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 048737 68 SNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 147 (274)
Q Consensus 68 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 147 (274)
..+-..+...|+-+....+........ +.|....+.++....+.|++..|+..+.+.... -++|..+|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~---~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY---PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC---cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHH
Confidence 444455555666666666655544332 344555555666666666666666666666554 2345666666666666
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHH
Q 048737 148 KNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRR 227 (274)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 227 (274)
+.|++++|..-|.+..+.. .-++..++.+.-.+.-.|+++.|..++......+. -|..+-..+..+....|++++|.+
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHh
Confidence 6666666666666666532 12344556666666666666666666666655432 344555556666666666666666
Q ss_pred HHHHHH
Q 048737 228 FAEEML 233 (274)
Q Consensus 228 ~~~~m~ 233 (274)
+...-.
T Consensus 224 i~~~e~ 229 (257)
T COG5010 224 IAVQEL 229 (257)
T ss_pred hccccc
Confidence 655433
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.7e-07 Score=73.48 Aligned_cols=252 Identities=12% Similarity=0.010 Sum_probs=136.1
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhCCCh---
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK-FFSNALDILVKLNDS--- 80 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~--- 80 (274)
.++...|..++-.+... ..-|+|+.....+...+...|+.++|+..|++.... .|+.. ......-.+...|+.
T Consensus 209 ~~~hs~a~~t~l~le~~-~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDN-TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred hcccchhhhHHHHHHhh-ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence 34445555555544443 446778888888888888888888888888877653 23221 111111222233444
Q ss_pred -------------------------------hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 81 -------------------------------THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 81 -------------------------------~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
+.|..+-++.++.. +.+...+-.-..++...++++.|.-.|+....
T Consensus 286 ~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~---~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 286 SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE---PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC---cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 44444444444433 22333333333445555666666666655544
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHH-HHHH-hcCChHHHHHHHHHHHHCCCCcc-H
Q 048737 130 HGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAI-TMLL-DADEPEFAIEIWNYILENGILPL-E 206 (274)
Q Consensus 130 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~ 206 (274)
.. +-+..+|.-|+.+|...|++.+|.-.-+...+. +..+..+.+.+. ..|. ....-++|..++++-... .|+ .
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~ 438 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYT 438 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccH
Confidence 31 124556666666666666666655444333221 112233333221 1111 112234455555444332 232 3
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHH
Q 048737 207 ASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLERR 268 (274)
Q Consensus 207 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 268 (274)
...+.+...+...|..+++..+++..... .||....+.|.+.+...+.. |.+.|..+++.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 44566667777888888888888877654 67877788887777776665 66666655543
No 79
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.08 E-value=5.6e-09 Score=88.52 Aligned_cols=187 Identities=14% Similarity=0.119 Sum_probs=136.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 50 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
.++..+...|+.|+..||..+|.-|+..|+++.|- +|..|.-.. .+.+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks--Lpv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS--LPVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc--ccccchhHHHHHhcccccccccCCC--------
Confidence 35667778899999999999999999999999999 999998887 7888999999999999999988876
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHhH---HHHHHHHHHh----CCC-----------------CCCcch----------HH
Q 048737 130 HGAFPDSLTYNMIFECLIKNKKVHE---VENFFHEMIK----NEW-----------------QPTPLN----------CA 175 (274)
Q Consensus 130 ~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~----~~~-----------------~~~~~~----------~~ 175 (274)
.|...||..|..+|...||... +.+.+..... .|+ -||..+ |.
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 5889999999999999998654 3332222221 121 122211 11
Q ss_pred HHHHHHHhc------C-----------ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 048737 176 TAITMLLDA------D-----------EPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRIL 238 (274)
Q Consensus 176 ~l~~~~~~~------~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 238 (274)
.++...... + +..-.+++........-.|+..+|..++..-...|+++.|..++.+|.+.|++
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 222222110 1 11112233332222111588999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHH
Q 048737 239 IYDVTMQKLKKA 250 (274)
Q Consensus 239 ~~~~~~~~l~~~ 250 (274)
.+..-|..|+-+
T Consensus 237 ir~HyFwpLl~g 248 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG 248 (1088)
T ss_pred cccccchhhhhc
Confidence 998888887766
No 80
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.1e-07 Score=77.32 Aligned_cols=246 Identities=16% Similarity=0.121 Sum_probs=179.1
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
+.+.|++.+|.-.|+....+ .|.+..+|.-|.......++-..|+..+.+..+.. +-+...+..|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkq---dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQ---DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhh---ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 35789999999999999888 99999999999999999999999999999998854 445778888888899999999
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHH-------HHHHhcCChhhHHHHHHHHH-hcCCCCChhhHHHHHHHHHhcCCHh
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVV-------GLLCNNNDVDNVFRFFDQMV-FHGAFPDSLTYNMIFECLIKNKKVH 153 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~ 153 (274)
.|.+.++..+... +|-...-..-. ..+..........++|-++. ..+..+|......|.-.|--.|+++
T Consensus 371 ~Al~~L~~Wi~~~---p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 371 QALKMLDKWIRNK---PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHhC---ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999888887653 11100000000 11222223444555555543 4444578888888888889999999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCCcchHHHHHHHH
Q 048737 154 EVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPL-EASANVLLVGLRNLGRLSDVRRFAEEM 232 (274)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m 232 (274)
+|.+.|+..+... +-|..+||.|.-.++...+..+|+..|++.++.. |+ +.+.-.|.-+|.+.|.+++|...|-..
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999998743 3357789999999999999999999999998853 44 345555667799999999999887765
Q ss_pred Hh---C------CCccCHHHHHHHHHHHHhcChh
Q 048737 233 LN---R------RILIYDVTMQKLKKAFYNESRS 257 (274)
Q Consensus 233 ~~---~------~~~~~~~~~~~l~~~~~~~g~~ 257 (274)
+. . +..++...|..|=.++.-.++.
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 43 1 1223345555555555555543
No 81
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.07 E-value=2.4e-08 Score=73.21 Aligned_cols=127 Identities=9% Similarity=0.079 Sum_probs=92.2
Q ss_pred cCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHH-HHhcCC--hh
Q 048737 42 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGL-LCNNND--VD 118 (274)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~ 118 (274)
.++.++++..++...+.+ +.|...|..+...|...|+++.|...|++..+.. +.+...+..+..+ +...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~---P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR---GENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCCCcH
Confidence 566677777777776653 5667788888888888888888888888888765 5567777777775 356666 47
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchH
Q 048737 119 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNC 174 (274)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 174 (274)
+|.+++++..+.+.. +..++..+...+...|++++|...|+++.+.. +|+..-+
T Consensus 128 ~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 128 QTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 888888888776432 56777777788888888888888888887654 4444443
No 82
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.02 E-value=2.6e-08 Score=73.34 Aligned_cols=170 Identities=11% Similarity=0.017 Sum_probs=143.4
Q ss_pred CCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHH
Q 048737 23 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLI 102 (274)
Q Consensus 23 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 102 (274)
...|.|... ..+...+...|+-+....+....... -+.|.......+....+.|++..|...+++..... ++|..
T Consensus 61 ~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~---p~d~~ 135 (257)
T COG5010 61 LRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA---PTDWE 135 (257)
T ss_pred hcCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC---CCChh
Confidence 447877777 77888888999999988888876543 34566677779999999999999999999999886 88999
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLL 182 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (274)
+|+.+.-+|.+.|+.+.|..-|.+..+... -+...+|.+...+.-.|+.+.|..++......+ .-|...-..+.....
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~ 213 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVG 213 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHh
Confidence 999999999999999999999999988632 356778889899999999999999999988765 346778888999999
Q ss_pred hcCChHHHHHHHHHHHH
Q 048737 183 DADEPEFAIEIWNYILE 199 (274)
Q Consensus 183 ~~~~~~~a~~~~~~~~~ 199 (274)
..|+++.|.++-..-..
T Consensus 214 ~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 214 LQGDFREAEDIAVQELL 230 (257)
T ss_pred hcCChHHHHhhcccccc
Confidence 99999999998765443
No 83
>PF12854 PPR_1: PPR repeat
Probab=99.02 E-value=5e-10 Score=56.59 Aligned_cols=31 Identities=35% Similarity=0.569 Sum_probs=13.6
Q ss_pred CCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 048737 132 AFPDSLTYNMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 132 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
+.||..||++||.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 84
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.01 E-value=2.1e-07 Score=70.69 Aligned_cols=184 Identities=12% Similarity=0.042 Sum_probs=121.1
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccH---
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL---KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNL--- 101 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--- 101 (274)
.+..+..++..+...|++++|...|+++.... +.++ .++..+..++.+.|+++.|...++++.+.. +.+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH---PNHPDAD 107 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCCchH
Confidence 56677778888888888888888888887642 2222 456677788888888888888888888764 2122
Q ss_pred HhHHHHHHHHHhc--------CChhhHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcc
Q 048737 102 IMYNAVVGLLCNN--------NDVDNVFRFFDQMVFHGAFPDS-LTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPL 172 (274)
Q Consensus 102 ~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 172 (274)
.++..+..++.+. |++++|.+.|+++... .|+. ..+..+.... . ... ... .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~~------~~~--------~ 167 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LRN------RLA--------G 167 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HHH------HHH--------H
Confidence 2455555555544 6778888888887764 2332 2222221110 0 000 000 0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CccHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 173 NCATAITMLLDADEPEFAIEIWNYILENGI--LPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
....+...+.+.|+++.|...+....+... +.....+..+..++...|++++|...++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 112456678889999999999998887532 223567888889999999999999988887765
No 85
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.01 E-value=2.9e-07 Score=80.51 Aligned_cols=220 Identities=10% Similarity=0.056 Sum_probs=150.7
Q ss_pred cCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCChhhHHHH--------------
Q 048737 22 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-KFFSNALDILVKLNDSTHTVQL-------------- 86 (274)
Q Consensus 22 ~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~-------------- 86 (274)
..+.|.+..+|..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+.+..+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ 101 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAI 101 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhH
Confidence 3678889999999999999999999999999977664 3442 3333333355555555444443
Q ss_pred ----HHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 048737 87 ----WDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 87 ----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
...+... .-+...+..+..+|-+.|+.++|..+|+++++.. +-|+.+.|.+...|... +.++|..++.+.
T Consensus 102 ve~~~~~i~~~----~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 102 VEHICDKILLY----GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHhh----hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 3333332 2234677888899999999999999999999986 34789999999999999 999999999988
Q ss_pred HhCCCCCCcchHHHHHH---HHH--hcCChHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 048737 163 IKNEWQPTPLNCATAIT---MLL--DADEPEFAIEIWNYILEN-GILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 163 ~~~~~~~~~~~~~~l~~---~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 236 (274)
...-+ +..-|+.+.. -++ ...+++.-..+.+.+... |..--+.++-.+...|...++++++..+++.+.+..
T Consensus 176 V~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 176 IYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred HHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 76411 1111222211 111 122344444444444432 333344566667788888899999999999999875
Q ss_pred CccCHHHHHHHHHHHH
Q 048737 237 ILIYDVTMQKLKKAFY 252 (274)
Q Consensus 237 ~~~~~~~~~~l~~~~~ 252 (274)
-. |.....-++.+|.
T Consensus 254 ~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 254 NK-NNKAREELIRFYK 268 (906)
T ss_pred Cc-chhhHHHHHHHHH
Confidence 33 6666777777777
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.00 E-value=2.4e-07 Score=70.29 Aligned_cols=185 Identities=9% Similarity=0.001 Sum_probs=125.8
Q ss_pred CCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCcc---HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh--
Q 048737 62 PTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPN---LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS-- 136 (274)
Q Consensus 62 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 136 (274)
.....+..+...+...|+++.|...|+++.... +.+ ..++..+..++.+.|++++|...++++.+.......
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY---PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 345677788888899999999999999998764 222 246778888999999999999999999875321111
Q ss_pred hhHHHHHHHHHhc--------CCHhHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHH
Q 048737 137 LTYNMIFECLIKN--------KKVHEVENFFHEMIKNEWQPTPL-NCATAITMLLDADEPEFAIEIWNYILENGILPLEA 207 (274)
Q Consensus 137 ~~~~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 207 (274)
.++..+..++... |++++|.+.++.+.+. .|+.. .+..+..... ... .. ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~--------~~ 167 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL--------AG 167 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH--------HH
Confidence 1455555555544 6788888888888764 34432 2222211100 000 00 01
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhCCC--ccCHHHHHHHHHHHHhcChh--HHHHHHHHHHHh
Q 048737 208 SANVLLVGLRNLGRLSDVRRFAEEMLNRRI--LIYDVTMQKLKKAFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 208 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 269 (274)
....+...|.+.|++++|...+++..+... +.....+..+..++.+.|+. |...++.+..+.
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 112456678999999999999999987632 22457888999999999998 777777776543
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.98 E-value=4.6e-08 Score=75.89 Aligned_cols=212 Identities=17% Similarity=0.149 Sum_probs=141.4
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHHhCCChhhH
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS-NALDILVKLNDSTHT 83 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a 83 (274)
.|+++. +..++... . .| ...+...+...+...++-+.++.-+++....+..++..++. .....+...|+++.|
T Consensus 48 lg~~~~---vl~ei~~~-~-~~-~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~A 121 (290)
T PF04733_consen 48 LGQYDS---VLSEIKKS-S-SP-ELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEA 121 (290)
T ss_dssp TT-HHH---HHHHS-TT-S-SC-CCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHH
T ss_pred cCChhH---HHHHhccC-C-Ch-hHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHH
Confidence 444443 34455443 2 45 66677767666666566677777777666554343333333 333556678999999
Q ss_pred HHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHhHHHHHH
Q 048737 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK----NKKVHEVENFF 159 (274)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~ 159 (274)
.+++... .+.......+.+|.+.++++.|.+.++.|.+. . +..+...+..++.. .+.+.+|..+|
T Consensus 122 L~~l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 122 LKLLHKG--------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D-EDSILTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp HCCCTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 8877542 25667777889999999999999999999875 2 33444445554433 34689999999
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCc-chHHHHHHHHHhC
Q 048737 160 HEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRL-SDVRRFAEEMLNR 235 (274)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 235 (274)
+++.+. ..+++.+.+.+..++...|++++|..++.+....+. -+..+...++.+....|+. +.+.+.+.++...
T Consensus 191 ~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 191 EELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 998764 457888889999999999999999999999877653 4566777777777778887 6677788887765
No 88
>PF12854 PPR_1: PPR repeat
Probab=98.98 E-value=7.1e-10 Score=56.02 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=15.7
Q ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 048737 201 GILPLEASANVLLVGLRNLGRLSDVRRFAEEM 232 (274)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 232 (274)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34445555555555555555555555554444
No 89
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.97 E-value=1.1e-07 Score=66.16 Aligned_cols=108 Identities=6% Similarity=-0.052 Sum_probs=75.3
Q ss_pred HHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHh
Q 048737 13 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVG 92 (274)
Q Consensus 13 ~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 92 (274)
.+|++..+. .|. .+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|++...
T Consensus 14 ~~~~~al~~---~p~---~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLSV---DPE---TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHc---CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 355555444 442 34456677777777777777777777653 44667777777777777777777777777777
Q ss_pred cCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 93 IGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
.. +.+...+..+..++.+.|++++|...|+...+.
T Consensus 87 l~---p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 87 LD---ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred cC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 65 556777777777777777777777777777664
No 90
>PLN02789 farnesyltranstransferase
Probab=98.97 E-value=3.3e-06 Score=66.52 Aligned_cols=219 Identities=9% Similarity=-0.004 Sum_probs=161.2
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-ChhhHHHHHHHHHhcCCccCccHHhHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN-DSTHTVQLWDIMVGIGFNLMPNLIMYNA 106 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (274)
-..++..+-..+...+..++|+.+..++++.. +-+..+|+..-.++...| +++++...++++.+.. +.+..+|+.
T Consensus 36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n---pknyqaW~~ 111 (320)
T PLN02789 36 FREAMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN---PKNYQIWHH 111 (320)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC---CcchHHhHH
Confidence 44566667777788889999999999999753 334556666666666777 6799999999999876 667778887
Q ss_pred HHHHHHhcCCh--hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 048737 107 VVGLLCNNNDV--DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDA 184 (274)
Q Consensus 107 l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (274)
...++.+.++. +++..+++++.+... -|..+|+...-.+...|+++++++.++++++.+ .-|...|+.....+.+.
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhc
Confidence 76666677763 678899989987654 378899999999999999999999999999876 34556676665555444
Q ss_pred ---CCh----HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc----CCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 048737 185 ---DEP----EFAIEIWNYILENGILPLEASANVLLVGLRNL----GRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYN 253 (274)
Q Consensus 185 ---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 253 (274)
|.. +.+.....+++...+ -|...|+-+...+... +...+|.+++.+....+ ..+......|++.|+.
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 222 456666666666543 5667888887777763 44567888888877654 3356677888888876
Q ss_pred c
Q 048737 254 E 254 (274)
Q Consensus 254 ~ 254 (274)
.
T Consensus 268 ~ 268 (320)
T PLN02789 268 G 268 (320)
T ss_pred h
Confidence 3
No 91
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=3.3e-06 Score=62.20 Aligned_cols=190 Identities=11% Similarity=0.114 Sum_probs=135.3
Q ss_pred cchHHHHHHHHHHHhc--cC-CCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhh
Q 048737 6 GNVVEANKTFGEMVER--FE-WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82 (274)
Q Consensus 6 g~~~~a~~~~~~~~~~--~~-~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (274)
.+.++..+++.++... .| ..|+--..|..++-+....|+.+.|...++++..+ ++-+...-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 4567777888777543 23 34433445677777888889999999999988775 33333332222233446688999
Q ss_pred HHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 048737 83 TVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
|.++|+.+.+.+ |.|.+++..=+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++
T Consensus 105 A~e~y~~lL~dd---pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 105 AIEYYESLLEDD---PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred HHHHHHHHhccC---cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999886 677788877777777778888888888877776 5668899999999999999999999999998
Q ss_pred HhCCCCCCcchHHHHHHHHHhcC---ChHHHHHHHHHHHHCC
Q 048737 163 IKNEWQPTPLNCATAITMLLDAD---EPEFAIEIWNYILENG 201 (274)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 201 (274)
+-.. +.++..+..+.+.+.-.| +...+...|.+..+..
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 7643 334455556665554444 5566788888777754
No 92
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.91 E-value=1.2e-07 Score=65.39 Aligned_cols=102 Identities=11% Similarity=0.159 Sum_probs=70.5
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhH
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMY 104 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (274)
.|.+......+...+...|++++|.+.|+.....+ +.+...+..+..++...|+++.|...+++..+.+ +.+..++
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~ 88 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD---PDDPRPY 88 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCChHHH
Confidence 66566666667777777777777777777776643 3456666677777777777777777777776654 4556666
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 105 NAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
..+..+|...|++++|...|+...+.
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66677777777777777777776664
No 93
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.90 E-value=2.7e-07 Score=67.73 Aligned_cols=161 Identities=10% Similarity=0.099 Sum_probs=123.5
Q ss_pred HHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcC
Q 048737 36 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNN 115 (274)
Q Consensus 36 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (274)
+..|...|+++.+......+.. |. ..+...++.+++...++...+.. +.|...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~---P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCC
Confidence 4568888999887655433321 11 01223667788888888888876 778999999999999999
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCC--HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHH
Q 048737 116 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECL-IKNKK--VHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIE 192 (274)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 192 (274)
++++|...|++..+... .+...+..+..++ ...|+ .++|..++++..+.. +-+...+..+...+.+.|++++|..
T Consensus 88 ~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 88 DYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998643 3678888888764 67777 599999999999865 3466788899999999999999999
Q ss_pred HHHHHHHCCCCccHHHHHHHHHH
Q 048737 193 IWNYILENGILPLEASANVLLVG 215 (274)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~ 215 (274)
.|+++.+... |+..-+..+ .+
T Consensus 166 ~~~~aL~l~~-~~~~r~~~i-~~ 186 (198)
T PRK10370 166 LWQKVLDLNS-PRVNRTQLV-ES 186 (198)
T ss_pred HHHHHHhhCC-CCccHHHHH-HH
Confidence 9999998653 555444433 54
No 94
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.88 E-value=2.8e-06 Score=76.02 Aligned_cols=217 Identities=10% Similarity=0.072 Sum_probs=170.2
Q ss_pred cccchHHHHHHHHHHHhccCCCCc--hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
+.++.++|++++++......+... -...|.++++.-..-|.-+...++|+++.+.- . ....|..|...|.+.+.++
T Consensus 1470 elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V~~~L~~iy~k~ek~~ 1547 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTVHLKLLGIYEKSEKND 1547 (1710)
T ss_pred hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHHHHHHHHHHHHhhcch
Confidence 457899999999998775333221 23468888888888898899999999998752 2 2567889999999999999
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCCHhHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD---SLTYNMIFECLIKNKKVHEVENF 158 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~ 158 (274)
.|-++++.|.+. +.....+|...+..+.+.++-+.|.+++.+.++. -|. .....-.++.-.+.|+.+.+..+
T Consensus 1548 ~A~ell~~m~KK---F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtl 1622 (1710)
T KOG1070|consen 1548 EADELLRLMLKK---FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTL 1622 (1710)
T ss_pred hHHHHHHHHHHH---hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHH
Confidence 999999999987 3567889999999999999999999999998875 233 33444555556688999999999
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccH--HHHHHHHHHHHhcCCcchHHHH
Q 048737 159 FHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLE--ASANVLLVGLRNLGRLSDVRRF 228 (274)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~ 228 (274)
|+.....- +--...|+..++.-.+.|+.+.++.+|++....++.|.- ..|...+..--+.|+-..+..+
T Consensus 1623 fEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1623 FEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 99988753 334679999999999999999999999999998876643 4455555555555665544443
No 95
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.8e-06 Score=67.88 Aligned_cols=223 Identities=12% Similarity=0.094 Sum_probs=157.7
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHH--------------------------
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM-------------------------- 55 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------------- 55 (274)
|...|+..+|+..|++.+.. .|.++.......-.+.+.|+.+....+...+
T Consensus 242 ~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~r 318 (564)
T KOG1174|consen 242 LYYNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFER 318 (564)
T ss_pred hhhhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHH
Confidence 45678888888888887554 6655444433334444555554444444333
Q ss_pred --------hcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 048737 56 --------KGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQM 127 (274)
Q Consensus 56 --------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (274)
++.+ +-+...|..-...+...++++.|.-.|+...... |.+...|.-|+.+|...|++.+|.-+-...
T Consensus 319 AL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 319 ALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA---PYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred HHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 3321 1122233333467778899999999999998865 668899999999999999999998877765
Q ss_pred HhcCCCCChhhHHHHH-HHHHhc-CCHhHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 048737 128 VFHGAFPDSLTYNMIF-ECLIKN-KKVHEVENFFHEMIKNEWQPTP-LNCATAITMLLDADEPEFAIEIWNYILENGILP 204 (274)
Q Consensus 128 ~~~~~~~~~~~~~~li-~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 204 (274)
.+. +..+..+...+. ..|.-. .--++|.+++++-.. +.|+. ...+.+...|...|..+.+..++++... ..|
T Consensus 395 ~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~ 469 (564)
T KOG1174|consen 395 IRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFP 469 (564)
T ss_pred HHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hcc
Confidence 443 334566665553 333322 234789999988776 45663 4677888899999999999999998877 358
Q ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 048737 205 LEASANVLLVGLRNLGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 205 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 236 (274)
|....+.|...+...+.+.+|++.|......+
T Consensus 470 D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 470 DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 88999999999999999999999998887663
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.83 E-value=8.2e-07 Score=76.78 Aligned_cols=135 Identities=11% Similarity=0.034 Sum_probs=109.8
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHh
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIM 103 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 103 (274)
.|.++.++-.|.....+.|..++|..+++...+. .|+ ......+...+.+.+++++|....++..... +-+...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~---p~~~~~ 156 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG---SSSARE 156 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC---CCCHHH
Confidence 5657888888888889999999999999888874 454 5566777888888999999999999998876 556777
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 048737 104 YNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (274)
.+.+..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|++..+.
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888888888999999999999988743 224788888888888899999999999888764
No 97
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=2.7e-07 Score=77.07 Aligned_cols=205 Identities=12% Similarity=0.062 Sum_probs=139.4
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhH
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (274)
..|-...|..+|+++ ..|..+|-+|...|+..+|..+..+..+ -+||+..|..+.+......-+++|
T Consensus 410 slGitksAl~I~Erl-----------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEka 476 (777)
T KOG1128|consen 410 SLGITKSALVIFERL-----------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKA 476 (777)
T ss_pred HcchHHHHHHHHHhH-----------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHH
Confidence 456666666666654 3456677788888888888888877776 367888888777766665556666
Q ss_pred HHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
.++.+..... .-..+.....+.++++++.+.|+.-.+.. +.-..+|-.+..+..+.++++.|.+.|....
T Consensus 477 wElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 477 WELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 6666554322 11111222233567777777777655532 2245677777777777788888888887777
Q ss_pred hCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 164 KNEWQPT-PLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 164 ~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
.. .|| ...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.++..
T Consensus 547 tL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 TL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 63 354 4678888888888888888888888887766 35556777777777888888888888777754
No 98
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=7.3e-07 Score=71.41 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=107.8
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
....+.-....+...|++++|+..++.+... .+-|+.........+.+.++.++|.+.++.+.... +.....+-.+
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~---P~~~~l~~~~ 380 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD---PNSPLLQLNL 380 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCccHHHHHH
Confidence 3445555666677788888888888887764 34455555666777888888888888888888754 2336667777
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCh
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEP 187 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (274)
..++.+.|++++|+.+++...... +-|+..|..|.++|...|+..++..-.-+.. ...|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~------------------~~~G~~ 441 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY------------------ALAGRL 441 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH------------------HhCCCH
Confidence 788888888888888888877663 4478888888888888888887777666553 235677
Q ss_pred HHHHHHHHHHHHC
Q 048737 188 EFAIEIWNYILEN 200 (274)
Q Consensus 188 ~~a~~~~~~~~~~ 200 (274)
+.|...+....+.
T Consensus 442 ~~A~~~l~~A~~~ 454 (484)
T COG4783 442 EQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777666653
No 99
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.81 E-value=6.2e-06 Score=68.36 Aligned_cols=237 Identities=13% Similarity=0.054 Sum_probs=173.4
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHH
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTV 84 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (274)
.+++...+++.+.+.++ .|....+.....-.+...|+-++|.+....-.+.+ .-+...|..+.-.+-...++++|.
T Consensus 20 ~kQYkkgLK~~~~iL~k---~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK---FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHhHHHHHHHHHHh---CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHH
Confidence 45667777777888777 55555666666667788899999999988877654 345678888888888889999999
Q ss_pred HHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 85 QLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
+.|..+...+ +.|...|.-+.-.-++.++++.......++.+.. +.....|.....++--.|+...|..+++...+
T Consensus 96 Kcy~nAl~~~---~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 96 KCYRNALKIE---KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHhcC---CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 6778888888888888899999888888887752 22467788888888889999999999999887
Q ss_pred CC-CCCCcchHHHHH------HHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 048737 165 NE-WQPTPLNCATAI------TMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI 237 (274)
Q Consensus 165 ~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 237 (274)
.. ..|+...|.... ....+.|.++.|.+.+..-... +.-....-..-...+.+.+++++|..++..++..
T Consensus 172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r-- 248 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER-- 248 (700)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--
Confidence 64 256665554332 3345677777777766554332 2122233344556678889999999999999887
Q ss_pred ccCHHHHHHHHHHHH
Q 048737 238 LIYDVTMQKLKKAFY 252 (274)
Q Consensus 238 ~~~~~~~~~l~~~~~ 252 (274)
.||...|...+..+.
T Consensus 249 nPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 249 NPDNLDYYEGLEKAL 263 (700)
T ss_pred CchhHHHHHHHHHHH
Confidence 466666666555444
No 100
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=2.1e-05 Score=63.33 Aligned_cols=136 Identities=13% Similarity=0.122 Sum_probs=86.0
Q ss_pred hCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHhH
Q 048737 76 KLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD-SLTYNMIFECLIKNKKVHE 154 (274)
Q Consensus 76 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~ 154 (274)
..|+++.|+..++.++..- |-|+..+....+.+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++.+
T Consensus 318 ~~~~~d~A~~~l~~L~~~~---P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ---PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HhcccchHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 5567777777777766653 445555556666777777777777777777664 344 4455566666777777777
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 155 VENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 155 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
|+.++....... +-|+..|..|.++|...|+..++.....+ .|...|++++|...+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 777776665543 45566777777777777776666544322 34445666666666666555
Q ss_pred C
Q 048737 235 R 235 (274)
Q Consensus 235 ~ 235 (274)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.79 E-value=5.1e-07 Score=62.76 Aligned_cols=92 Identities=12% Similarity=0.010 Sum_probs=49.4
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 048737 69 NALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148 (274)
Q Consensus 69 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 148 (274)
.+...+...|++++|...|+++.... +.+...|..+..++.+.|++++|...|++..... +.+...+..+..++..
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ---PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 34445555555555555555555543 3445555555555555555555555555555432 1244555555555555
Q ss_pred cCCHhHHHHHHHHHHh
Q 048737 149 NKKVHEVENFFHEMIK 164 (274)
Q Consensus 149 ~~~~~~a~~~~~~~~~ 164 (274)
.|++++|...|+...+
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555554
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.78 E-value=3.8e-06 Score=72.79 Aligned_cols=148 Identities=7% Similarity=-0.078 Sum_probs=119.9
Q ss_pred CCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH
Q 048737 60 CFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTY 139 (274)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (274)
.+.+...+..|.......|.+++|+.+++.+.+.. |-+......+...+.+.+++++|+..+++...... -+....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHH
Confidence 34567888888999999999999999999999864 44567788888999999999999999999988643 256777
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHH
Q 048737 140 NMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLL 213 (274)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 213 (274)
..+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.. .|...-|+.++
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 888888999999999999999998733 3346788899999999999999999999988742 24445555443
No 103
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.74 E-value=2.5e-05 Score=64.93 Aligned_cols=133 Identities=11% Similarity=0.083 Sum_probs=96.6
Q ss_pred CCChhhH--HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHH
Q 048737 133 FPDSLTY--NMIFECLIKNKKVHEVENFFHEMIKNEWQPTP-LNCATAITMLLDADEPEFAIEIWNYILENGILPLEASA 209 (274)
Q Consensus 133 ~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 209 (274)
+|+...| -.++..+-..|+++.|+..++..+.. .|+. ..|..=.+.+...|+++.|..++.+..+.+. ||...-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHH
Confidence 4555444 46778899999999999999998763 5653 3455556888999999999999999998774 776665
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHH----------HHHHHhcChh--HHHHHHHHHHHhh
Q 048737 210 NVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKL----------KKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 210 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l----------~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
.--..-..++++.++|..+....-+.|. +...+..- ..+|.+.|++ |.+-|..+.+..+
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~ 513 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYK 513 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5677778899999999999999888764 33222222 2355566666 6666666655554
No 104
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.74 E-value=1.5e-06 Score=59.77 Aligned_cols=96 Identities=9% Similarity=0.054 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 048737 65 KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 144 (274)
Q Consensus 65 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 144 (274)
.....+...+...|++++|...++.+...+ +.+...+..+..++.+.|++++|...+++..+.+ +.+...+..+..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD---PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 344455555566666666666666666544 4455566666666666666666666666655542 224455555555
Q ss_pred HHHhcCCHhHHHHHHHHHHh
Q 048737 145 CLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~ 164 (274)
.|...|++++|...|+...+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666555
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=5.6e-07 Score=75.26 Aligned_cols=181 Identities=14% Similarity=0.092 Sum_probs=150.7
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|...|+-.+|..+..+..++ +| ++..|..+........-+++|.++.+....+ .-..+.....+.++++
T Consensus 434 Y~~lg~~~kaeei~~q~lek---~~-d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs 502 (777)
T KOG1128|consen 434 YLLLGQHGKAEEINRQELEK---DP-DPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFS 502 (777)
T ss_pred HHHhcccchHHHHHHHHhcC---CC-cchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHH
Confidence 56778888888888877665 55 8999999999999999999999999876543 1122223334578999
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD-SLTYNMIFECLIKNKKVHEVENFFH 160 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~ 160 (274)
++.+.|+.-.+.. +....+|-.+.-+..+.++++.|.+.|..-... .|| ...||.+-.+|.+.++-.+|...+.
T Consensus 503 ~~~~hle~sl~~n---plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 503 EADKHLERSLEIN---PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred HHHHHHHHHhhcC---ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 9999999998875 667889999999999999999999999998874 454 7899999999999999999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048737 161 EMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (274)
+..+.+ .-+...|-..+....+.|.++.|.+.+.++.+
T Consensus 578 EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 578 EALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999877 56677888888888999999999999998876
No 106
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=4.4e-05 Score=62.87 Aligned_cols=263 Identities=13% Similarity=0.133 Sum_probs=159.4
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcC------------------------
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE------------------------ 58 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------------------ 58 (274)
.+.|++++|.+...++... .|++..++..-+-++++.+++++|+++.+.-...
T Consensus 23 ~~~~e~e~a~k~~~Kil~~---~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSI---VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred ccchHHHHHHHHHHHHHhc---CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHH
Confidence 4678999999999999654 6888888888888999999999998766543210
Q ss_pred ----CCCC-CHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCc---------------------------cHHhHHH
Q 048737 59 ----NCFP-TLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMP---------------------------NLIMYNA 106 (274)
Q Consensus 59 ----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------------------~~~~~~~ 106 (274)
|..+ +..+...-...+.+.+++++|..+|+.+.+.+ .+. ...+|..
T Consensus 100 k~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~--~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel 177 (652)
T KOG2376|consen 100 KTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN--SDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYEL 177 (652)
T ss_pred HHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHH
Confidence 0111 11122233456778899999999999998877 110 0112222
Q ss_pred ---HHHHHHhcCChhhHHHHHHHHHhcC-------CC------CCh-hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 048737 107 ---VVGLLCNNNDVDNVFRFFDQMVFHG-------AF------PDS-LTYNMIFECLIKNKKVHEVENFFHEMIKNEWQP 169 (274)
Q Consensus 107 ---l~~~~~~~~~~~~a~~~~~~~~~~~-------~~------~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 169 (274)
..-.++..|++.+|+++++...+.+ -. -.. ..-..+.-.+...|+.++|..++...++.. ++
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~ 256 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PA 256 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CC
Confidence 2334566799999999999883211 00 000 122345566778899999999888887654 33
Q ss_pred CcchH----HHH-----------------------------------------------HHHHH----------------
Q 048737 170 TPLNC----ATA-----------------------------------------------ITMLL---------------- 182 (274)
Q Consensus 170 ~~~~~----~~l-----------------------------------------------~~~~~---------------- 182 (274)
|.... |.| +..|.
T Consensus 257 D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~ 336 (652)
T KOG2376|consen 257 DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGM 336 (652)
T ss_pred CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc
Confidence 33211 100 00000
Q ss_pred ----------------hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHH--------HHHhCCCc
Q 048737 183 ----------------DADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAE--------EMLNRRIL 238 (274)
Q Consensus 183 ----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--------~m~~~~~~ 238 (274)
+.....++..++....+....-...+--..+......|+++.|.+++. .+.+.+..
T Consensus 337 ~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~ 416 (652)
T KOG2376|consen 337 SPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL 416 (652)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC
Confidence 001122333333333332211123445555666778899999999999 66666666
Q ss_pred cCHHHHHHHHHHHHhcChh--HHHHHHHHHHHhhhhC
Q 048737 239 IYDVTMQKLKKAFYNESRS--MRDRFDSLERRWKTSQ 273 (274)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~~~~ 273 (274)
|-.+ ..+...+.+.++. |..+++.+++.|+..+
T Consensus 417 P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 417 PGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred hhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 6544 4555555555544 8999999999887643
No 107
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1.2e-05 Score=60.90 Aligned_cols=247 Identities=11% Similarity=0.040 Sum_probs=143.6
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHhCCChh
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA-LDILVKLNDST 81 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~ 81 (274)
.+..++++|++++..-.++ .|.+......|..+|-...++..|-+.++++-.. .|...-|... ...+.+.+.+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er---~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELER---SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHhhHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccH
Confidence 3556888899988888777 7777888888888888999999999999888653 4544444321 12233444444
Q ss_pred hHHHHHHHHHhcC-----------------C---------c---cCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 048737 82 HTVQLWDIMVGIG-----------------F---------N---LMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGA 132 (274)
Q Consensus 82 ~a~~~~~~~~~~~-----------------~---------~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 132 (274)
.|.++...|.... . + -..+..+.+...-...+.|+++.|.+-|+...+-+-
T Consensus 96 DALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 96 DALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 4444443333210 0 0 011233333344445577888899888888777544
Q ss_pred CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcc---------------------hHHHHHHH-------HHhc
Q 048737 133 FPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPL---------------------NCATAITM-------LLDA 184 (274)
Q Consensus 133 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------------~~~~l~~~-------~~~~ 184 (274)
-.....||..+..| +.++++.|++...++++.|++..+. .-..++.+ +.+.
T Consensus 176 yqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 176 YQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred CCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 44567787776655 5578888998888888776532211 01222322 3456
Q ss_pred CChHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh
Q 048737 185 DEPEFAIEIWNYILEN-GILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS 257 (274)
Q Consensus 185 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 257 (274)
++++.|.+.+-.|.-+ ....|+.|...+.-.= ..+++-+..+-+.-+...+. ....||..++-.||+..-+
T Consensus 255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred ccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 7777777777666432 2233445544433221 22344444444444454433 3446666666666666433
No 108
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.70 E-value=5.7e-05 Score=65.12 Aligned_cols=223 Identities=13% Similarity=0.123 Sum_probs=154.0
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHH--HhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLIT--LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
..+++.+|+...+++.++ .| +. .|...+.+ +.+.|..++|..+++.....+.. |..|...+-.+|...++.+
T Consensus 21 d~~qfkkal~~~~kllkk---~P-n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK---HP-NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhHHHHHHHHHHHHHHHH---CC-Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 467889999999999888 77 33 34444444 57889999999888887765433 8889999999999999999
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-C---------
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK-K--------- 151 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~--------- 151 (274)
+|..+|++..... |+......+..+|.|.+++.+-.++--++-+. .+-+...+-.+++...+.- .
T Consensus 95 ~~~~~Ye~~~~~~----P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 95 EAVHLYERANQKY----PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred HHHHHHHHHHhhC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchh
Confidence 9999999999864 67788888888999988877655555444443 3334555555555544322 1
Q ss_pred HhHHHHHHHHHHhCC-CCCCcchHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHH
Q 048737 152 VHEVENFFHEMIKNE-WQPTPLNCATAITMLLDADEPEFAIEIWN-YILENGILPLEASANVLLVGLRNLGRLSDVRRFA 229 (274)
Q Consensus 152 ~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 229 (274)
..-|.+.++.+.+.+ -.-+..-...-...+...|.+++|.+++. ..-+.-...+...-+.-+..+...+++.+..++-
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 123555666666543 11122222333445567889999999984 4444333344455556677788889999999998
Q ss_pred HHHHhCCC
Q 048737 230 EEMLNRRI 237 (274)
Q Consensus 230 ~~m~~~~~ 237 (274)
.++...|.
T Consensus 250 ~~Ll~k~~ 257 (932)
T KOG2053|consen 250 SRLLEKGN 257 (932)
T ss_pred HHHHHhCC
Confidence 88888753
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=1.1e-05 Score=66.03 Aligned_cols=221 Identities=10% Similarity=-0.011 Sum_probs=160.9
Q ss_pred HHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcC
Q 048737 36 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNN 115 (274)
Q Consensus 36 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (274)
..-+.+.|++.+|.-.|+...+.+ +-+...|..|.......++-..|+..+++..+.. +-|..+.-.|.-.|...|
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD---PTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---CccHHHHHHHHHHHhhhh
Confidence 345678899999999999988764 5567899999999999999999999999999976 667888889999999999
Q ss_pred ChhhHHHHHHHHHhcCCCC--------ChhhHHHHHHHHHhcCCHhHHHHHHHHH-HhCCCCCCcchHHHHHHHHHhcCC
Q 048737 116 DVDNVFRFFDQMVFHGAFP--------DSLTYNMIFECLIKNKKVHEVENFFHEM-IKNEWQPTPLNCATAITMLLDADE 186 (274)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 186 (274)
.-..|+..++.-....++- +...-.. ..+.......+..++|-.+ ...+..+|+.....|.-.|--.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 9999999998765432110 0000000 1111112233444444444 455656888899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCH-HHHHHHHHHHHhcChh--HHHHHH
Q 048737 187 PEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYD-VTMQKLKKAFYNESRS--MRDRFD 263 (274)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~--a~~~~~ 263 (274)
+++|.+.|+..+...+ -|...||.|-..++...+.++|+..|.+.++. +|+. +....|.-+|...|.+ |.+.|=
T Consensus 446 fdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 9999999999988653 56788999999999999999999999999876 4443 2233344556666655 444443
Q ss_pred HH
Q 048737 264 SL 265 (274)
Q Consensus 264 ~~ 265 (274)
.+
T Consensus 523 ~A 524 (579)
T KOG1125|consen 523 EA 524 (579)
T ss_pred HH
Confidence 33
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.69 E-value=7.8e-06 Score=71.90 Aligned_cols=202 Identities=12% Similarity=0.111 Sum_probs=139.7
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCH------------------
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL------------------ 64 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------ 64 (274)
-..|++++|.++.+...+. .|.....|..+...+.+.++...+..+ .+... ++.+.
T Consensus 42 ~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~~~~i~~~~~~ 115 (906)
T PRK14720 42 KSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHICDKILLYGEN 115 (906)
T ss_pred HhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHHHHHHHHhhhhh
Confidence 3678999999999977665 787777777777788888877777666 33332 22232
Q ss_pred -HHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 048737 65 -KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIF 143 (274)
Q Consensus 65 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 143 (274)
..+..+..+|-+.|+.+++..+|+++.+.. +-|+.+.|.+...|... +.++|.+++.+....-+ +..-|+.+.
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~ 189 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIE 189 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHH
Confidence 566778888999999999999999999987 67899999999999999 99999999998876411 111122211
Q ss_pred HH---HH--hcCCHhHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 048737 144 EC---LI--KNKKVHEVENFFHEMIKN-EWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLR 217 (274)
Q Consensus 144 ~~---~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (274)
.. ++ ...+++.-..+.+.+... |..--..++--+-..|-...+++++..+++.+.+... -|.....-++.+|.
T Consensus 190 e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 190 EIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 11 11 112233333333333332 2222234455566788888999999999999998764 46667777887776
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=4e-05 Score=69.90 Aligned_cols=268 Identities=9% Similarity=0.027 Sum_probs=170.2
Q ss_pred ccccchHHHHHHHHHHHhccCCCCc--hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCC--C-CC--CHHHHHHHHHHHH
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGEN--C-FP--TLKFFSNALDILV 75 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~ 75 (274)
...|++++|...+++.......... ...+.+.+...+...|++++|...+.+..... . .+ ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 3578999999999887652111110 12345666777888999999999998876421 1 11 1234556667788
Q ss_pred hCCChhhHHHHHHHHHhc----CCc-cCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCC--ChhhHHHHHHHH
Q 048737 76 KLNDSTHTVQLWDIMVGI----GFN-LMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHG--AFP--DSLTYNMIFECL 146 (274)
Q Consensus 76 ~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~ 146 (274)
..|+++.|...+++.... +.. .......+..+...+...|++++|...+++..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998887653 200 01123345556667778899999999998875431 112 234455566778
Q ss_pred HhcCCHhHHHHHHHHHHhCCCC-CCcchH-----HHHHHHHHhcCChHHHHHHHHHHHHCCCCcc---HHHHHHHHHHHH
Q 048737 147 IKNKKVHEVENFFHEMIKNEWQ-PTPLNC-----ATAITMLLDADEPEFAIEIWNYILENGILPL---EASANVLLVGLR 217 (274)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 217 (274)
...|++++|...+......... .....+ ...+..+...|+.+.|..++........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999999887542111 111111 1122444567899999888766543221111 111345667788
Q ss_pred hcCCcchHHHHHHHHHhC----CCccC-HHHHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 218 NLGRLSDVRRFAEEMLNR----RILIY-DVTMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 218 ~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
..|++++|...+++.... |..++ ..+...+..++...|+. |.+.+.++++...
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 899999999999887653 32222 24556666777888887 8888888776543
No 112
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=8.4e-05 Score=55.40 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=91.5
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 048737 102 IMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITML 181 (274)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (274)
.....-...|++.+++++|++...... +......=...+.+..+++-|.+.+++|.+- -+..|.+.|..++
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~aw 179 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAW 179 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHH
Confidence 333334456777788888887776622 2333333344556667777888888888763 3455666666665
Q ss_pred Hhc----CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh
Q 048737 182 LDA----DEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS 257 (274)
Q Consensus 182 ~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 257 (274)
.+. +.+..|.-+|++|.+. ..|+..+.+-...++...|++++|..++++...+... ++.|...++-+-...|+.
T Consensus 180 v~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 542 4577777788777653 3477777777777777888888888888887766433 455555555544444533
No 113
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.61 E-value=1.1e-06 Score=70.96 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=64.7
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHH
Q 048737 135 DSLTYNMIFECLIKNKKVHEVENFFHEMIKN--EWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVL 212 (274)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (274)
+......++..+....+++.+..++.+.+.. ....-+.|.+++++.|.+.|..+.+..+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444555555555555555555555555543 11112234445556666666556555555555555555666666666
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhc
Q 048737 213 LVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNE 254 (274)
Q Consensus 213 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 254 (274)
|..+.+.|++..|.++..+|..++...+..|+..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666555555555555555555555555444
No 114
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.61 E-value=1.3e-06 Score=70.20 Aligned_cols=124 Identities=15% Similarity=0.190 Sum_probs=99.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHH
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGL 110 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (274)
.-..|+..+...++++.|+.+|+++.+.. |+. ...+...+...++-.+|.+++++.++.. +.+......-...
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~---p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN---PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 34556777777889999999999988764 543 4457777777888888999988888764 5677777777888
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 111 LCNNNDVDNVFRFFDQMVFHGAFPD-SLTYNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
+.+.++++.|+.+.+++... .|+ -.+|..|..+|...|+++.|+..++.+-
T Consensus 244 Ll~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88999999999999998885 454 5689999999999999999998888764
No 115
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.59 E-value=0.00013 Score=60.86 Aligned_cols=133 Identities=10% Similarity=0.029 Sum_probs=79.6
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC---------
Q 048737 101 LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD---SLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQ--------- 168 (274)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------- 168 (274)
...|..+.+.|-..|+.+.|..+|++..+...+.- ..+|......=.+..+++.|.++++.....--.
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 34678888889999999999999999877533211 345555555556677888888887776432111
Q ss_pred -C-------CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 169 -P-------TPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 169 -~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
| +...|...++.--..|-++....+|+++.+..+ .++...-.....+-.+..++++++++++-+.
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 1 112344555555666788888888888877654 2222222222223344445555555554433
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=1.7e-05 Score=58.93 Aligned_cols=194 Identities=16% Similarity=0.086 Sum_probs=117.3
Q ss_pred HhHHHHHHHHHhccCcHHHHHH-HHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 29 VLAYETFLITLIRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 29 ~~~~~~li~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
..+...+...+...++.++-+. +.+.+.......+......-...|...+++++|.+...... +....-.=
T Consensus 72 lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--------~lE~~Al~ 143 (299)
T KOG3081|consen 72 LQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--------NLEAAALN 143 (299)
T ss_pred HHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--------hHHHHHHH
Confidence 3444444444444555444443 34444433333333333334456778888888887776521 22233333
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK----NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (274)
+..+.+..+.+-|...+++|.+- -+..|.+.|.+++.+ .+.+.+|.-+|++|-++ ..|++.+.+-...++..
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~ 219 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQ 219 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHH
Confidence 45566677788888888888763 356677767776654 34577888888888653 46788888888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCc-chHHHHHHHHHhC
Q 048737 184 ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRL-SDVRRFAEEMLNR 235 (274)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 235 (274)
.|++++|..+++....... -++.+...++..-...|.. +-..+.+.++...
T Consensus 220 ~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 220 LGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred hcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 8888888888888887654 3344444444444444444 4445556665544
No 117
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.57 E-value=8.5e-06 Score=56.81 Aligned_cols=19 Identities=5% Similarity=0.001 Sum_probs=7.7
Q ss_pred HHhCCChhhHHHHHHHHHh
Q 048737 74 LVKLNDSTHTVQLWDIMVG 92 (274)
Q Consensus 74 ~~~~~~~~~a~~~~~~~~~ 92 (274)
+...|++++|...|+.+..
T Consensus 58 ~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 58 AYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHCCCHHHHHHHHHHHHh
Confidence 3333444444444444433
No 118
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.57 E-value=1.6e-07 Score=47.97 Aligned_cols=31 Identities=32% Similarity=0.613 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 048737 139 YNMIFECLIKNKKVHEVENFFHEMIKNEWQP 169 (274)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 169 (274)
|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 4444444444444444444444444444433
No 119
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.57 E-value=0.0002 Score=60.88 Aligned_cols=253 Identities=14% Similarity=0.046 Sum_probs=171.1
Q ss_pred chHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHH
Q 048737 7 NVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQL 86 (274)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 86 (274)
...++++.+++..+. .|.|+.+...+.--|+..++++.|.+...+..+-+-.-+...|..|.-.+...+++..|+.+
T Consensus 459 ~h~kslqale~av~~---d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQF---DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 345677888888665 55566555556667888999999999999999876667888999999999999999999999
Q ss_pred HHHHHhcCCccCcc--------------------HHhHHHHHHHHHh-----------------------cCChhhHHHH
Q 048737 87 WDIMVGIGFNLMPN--------------------LIMYNAVVGLLCN-----------------------NNDVDNVFRF 123 (274)
Q Consensus 87 ~~~~~~~~~~~~~~--------------------~~~~~~l~~~~~~-----------------------~~~~~~a~~~ 123 (274)
.+.....- +.| ..|+..++...-. .++..+|.+.
T Consensus 536 vd~al~E~---~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~ 612 (799)
T KOG4162|consen 536 VDAALEEF---GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST 612 (799)
T ss_pred HHHHHHHh---hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh
Confidence 98877542 111 2222233222220 0111112111
Q ss_pred HHHH--------HhcC---------CCC--C------hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHH
Q 048737 124 FDQM--------VFHG---------AFP--D------SLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAI 178 (274)
Q Consensus 124 ~~~~--------~~~~---------~~~--~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 178 (274)
...+ ...| +.| + ...|......+.+.++.++|...+.+..... +-....|....
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G 691 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRG 691 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhh
Confidence 1111 0000 011 1 1234455566777777888877777765532 23344566666
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHH--HHHHHHhCCCccCHHHHHHHHHHHHhcCh
Q 048737 179 TMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRR--FAEEMLNRRILIYDVTMQKLKKAFYNESR 256 (274)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 256 (274)
..+...|.+.+|.+.|......++ -++.+..++...+.+.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~ldP-~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALALDP-DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccc
Confidence 777788899999999988877552 456778889999999998887777 999998876 4478899999999999998
Q ss_pred h--HHHHHHHHHHH
Q 048737 257 S--MRDRFDSLERR 268 (274)
Q Consensus 257 ~--a~~~~~~~~~~ 268 (274)
. |-+-|+...+.
T Consensus 770 ~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 770 SKQAAECFQAALQL 783 (799)
T ss_pred hHHHHHHHHHHHhh
Confidence 8 77777766553
No 120
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.56 E-value=0.00017 Score=55.94 Aligned_cols=225 Identities=14% Similarity=0.066 Sum_probs=167.6
Q ss_pred cccccchHHHHHHHHHHHhccCCCCch---HhHH------------HHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHH
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEH---VLAY------------ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 66 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 66 (274)
+.+.|.+++|..=|+.+.+. .|.+ ..++ ...+..+...|+...|+.....+++. .+-|...
T Consensus 116 llK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l 191 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASL 191 (504)
T ss_pred hhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHH
Confidence 35789999999999999776 4421 1122 12344566779999999999999885 3457778
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh----HHH-
Q 048737 67 FSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLT----YNM- 141 (274)
Q Consensus 67 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~- 141 (274)
+..-..+|...|++..|..=+....+.. ..+..++.-+...+...|+.+.++...++.++. .||... |-.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs---~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS---QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHH
Confidence 8888899999999999999998888875 567788888889999999999999999998874 566422 111
Q ss_pred ------H--HHHHHhcCCHhHHHHHHHHHHhCCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHH
Q 048737 142 ------I--FECLIKNKKVHEVENFFHEMIKNEWQPTPL---NCATAITMLLDADEPEFAIEIWNYILENGILPLEASAN 210 (274)
Q Consensus 142 ------l--i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 210 (274)
+ +......++|.++++-.+...+..-..... .+..+-.++...+++.+|++...+..+.. +.|+.++.
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~ 345 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHH
Confidence 1 223455678888888888877754221222 34456677778899999999999998754 24478888
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCC
Q 048737 211 VLLVGLRNLGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 211 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 236 (274)
.-..+|.-...+|.|+.-|+...+.+
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 88888988888999999888877653
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=0.00012 Score=54.19 Aligned_cols=190 Identities=10% Similarity=0.031 Sum_probs=140.4
Q ss_pred ccCcHHHHHHHHHHHhc---CC-CCCCHH-HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcC
Q 048737 41 RGKQVDEALKFLRVMKG---EN-CFPTLK-FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNN 115 (274)
Q Consensus 41 ~~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (274)
...+.++.++++.++.. .| ..++.. .|..++-+....|+.+.|...++++... ++-+..+-..-.-.+-..|
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~---fp~S~RV~~lkam~lEa~~ 100 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR---FPGSKRVGKLKAMLLEATG 100 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHhh
Confidence 34567788888877764 23 445544 4556666777889999999999999876 3334333333333455679
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 048737 116 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWN 195 (274)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (274)
++++|.++++.++... +.|..++-.=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++
T Consensus 101 ~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred chhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 9999999999999875 446788877777777888888898888888765 46789999999999999999999999999
Q ss_pred HHHHCCCCccHHHHHHHHHHHHhcC---CcchHHHHHHHHHhCC
Q 048737 196 YILENGILPLEASANVLLVGLRNLG---RLSDVRRFAEEMLNRR 236 (274)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~ 236 (274)
++.-..+ .+...+..+...+.-.| +.+-+.+.|.+..+.+
T Consensus 179 E~ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 179 ELLLIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9987542 34445555666554443 5667888888887764
No 122
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.56 E-value=0.00029 Score=58.93 Aligned_cols=260 Identities=12% Similarity=0.061 Sum_probs=162.8
Q ss_pred ccchHHHHHHHHHHHhccCCCCch-----HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHh
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT---LKFFSNALDILVK 76 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 76 (274)
.|+..+-..+|.+...+ +.|.- ...|..+...|-..|+++.|..+|++..+...+.- ..+|..-...=.+
T Consensus 360 e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred cCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 45566667777776553 33311 23688889999999999999999998877543322 3445555555556
Q ss_pred CCChhhHHHHHHHHHhcCC---------ccCc------cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHH
Q 048737 77 LNDSTHTVQLWDIMVGIGF---------NLMP------NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNM 141 (274)
Q Consensus 77 ~~~~~~a~~~~~~~~~~~~---------~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (274)
..+++.|.++.+.+...-. ..++ +...|...++.--..|-++....+|+++.+..+- ++...-.
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~N 516 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIIN 516 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 7788888888877764210 0111 3445666777777778889999999998886543 3333222
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCc-chHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCccHHHH--HHHHHH
Q 048737 142 IFECLIKNKKVHEVENFFHEMIKNEWQPTP-LNCATAITMLLD---ADEPEFAIEIWNYILENGILPLEASA--NVLLVG 215 (274)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~ 215 (274)
....+..+.-++++.++|++-+..=-.|+. ..|++.+.-+.+ ...++.|.++|++..+ |.+|...-+ -.....
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 333344556678888888876654334443 356655554443 2378899999999998 665543222 222222
Q ss_pred HHhcCCcchHHHHHHHHHhCCCccCH--HHHHHHHHHHHh-cChh-HHHHHHHHHHHh
Q 048737 216 LRNLGRLSDVRRFAEEMLNRRILIYD--VTMQKLKKAFYN-ESRS-MRDRFDSLERRW 269 (274)
Q Consensus 216 ~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~-~g~~-a~~~~~~~~~~~ 269 (274)
--+.|-...|++++++.... +.+.. ..|+..|.--.. -|-. .+++++++++..
T Consensus 596 EEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L 652 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL 652 (835)
T ss_pred HHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC
Confidence 24558888899999886543 33332 456666654433 3433 788888888764
No 123
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.55 E-value=1.3e-07 Score=48.32 Aligned_cols=34 Identities=29% Similarity=0.638 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS 136 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 136 (274)
+||+++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6788888888888888888888888888887763
No 124
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.54 E-value=5.3e-06 Score=66.81 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 048737 63 TLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMI 142 (274)
Q Consensus 63 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (274)
+......|+..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++++..+.. +-+......-
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~----pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Q 240 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD----PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQ 240 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC----Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34555677888888899999999999998864 54 44557888888999999999999988752 3366777777
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHH
Q 048737 143 FECLIKNKKVHEVENFFHEMIKNEWQPTP-LNCATAITMLLDADEPEFAIEIWNYIL 198 (274)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (274)
...|...++++.|+.+.+++.+. .|+. .+|..|..+|...|+++.|...++.+.
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 78899999999999999999885 4665 599999999999999999999988765
No 125
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.53 E-value=1.7e-06 Score=55.56 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=60.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHhcC--------CcchHHHHHHHHHhCCCccCHHHHHH
Q 048737 176 TAITMLLDADEPEFAIEIWNYILENGI-LPLEASANVLLVGLRNLG--------RLSDVRRFAEEMLNRRILIYDVTMQK 246 (274)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~m~~~~~~~~~~~~~~ 246 (274)
.-|.-|...+++...-.+|+.++..|+ .|+..+|+.++.+..+.. ++-+.+.+|+.|+..+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 445555666888888888888888887 788888888887776553 24456778888888889999999999
Q ss_pred HHHHHHhc
Q 048737 247 LKKAFYNE 254 (274)
Q Consensus 247 l~~~~~~~ 254 (274)
++.++.+.
T Consensus 110 vl~~Llkg 117 (120)
T PF08579_consen 110 VLGSLLKG 117 (120)
T ss_pred HHHHHHHh
Confidence 88887654
No 126
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=9.1e-06 Score=62.92 Aligned_cols=213 Identities=10% Similarity=0.065 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-----HHhCCChhhH
Q 048737 9 VEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI-----LVKLNDSTHT 83 (274)
Q Consensus 9 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a 83 (274)
+.|++++-.+... -| .+-..|+-.|.+.+++.+|..+..++.- ..|-....-.+..+ ......+.-|
T Consensus 271 EgALqVLP~L~~~---IP---EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 271 EGALQVLPSLMKH---IP---EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred ccHHHhchHHHhh---Ch---HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 4455555555333 33 3556677788889999999888876532 22322222222211 1122235556
Q ss_pred HHHHHHHHhcCCccCcc-HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 048737 84 VQLWDIMVGIGFNLMPN-LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 84 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
.+.|+..-+++ ...| ..--.++...+.-..++++.+-.+..+..- +.-|....-.+.++++..|++.+|+++|-..
T Consensus 343 qqffqlVG~Sa--~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 343 QQFFQLVGESA--LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHhcccc--cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 66666555555 3333 223445556666666777777777776654 2223333334667788888888888888666
Q ss_pred HhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHH-HHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 163 IKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASA-NVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
....++.+..-...|.++|.+++.++.|++++-++. .+.+..+. ..+..-|.+.+.+--|.+.|+++...
T Consensus 420 s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 420 SGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred cChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 544433333333456677788888888877654432 22222333 33345666777777777777766654
No 127
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.52 E-value=3.4e-06 Score=68.27 Aligned_cols=125 Identities=13% Similarity=0.087 Sum_probs=72.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 048737 59 NCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLT 138 (274)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 138 (274)
+.+.+...+..+++.+....+++.+..++-+..........-..|..++++.|.+.|..+.++++++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34455555566666666666666666666665543100112233445666666666666666666666666666666666
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 048737 139 YNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183 (274)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (274)
+|.+|..+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 666666666666666666666666655555555555444444433
No 128
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.51 E-value=5.7e-06 Score=57.70 Aligned_cols=117 Identities=12% Similarity=0.069 Sum_probs=90.2
Q ss_pred cccchHHHHHHHHHHHhccCCCCch---HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhCC
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEH---VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT--LKFFSNALDILVKLN 78 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~ 78 (274)
..++...+.+.++.+... .|++ ..+.-.+...+...|++++|...|+........|+ ......|...+...|
T Consensus 23 ~~~~~~~~~~~~~~l~~~---~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~ 99 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD---YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG 99 (145)
T ss_pred HCCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC
Confidence 367888888899999887 5534 34455577888999999999999999998652222 224445678888999
Q ss_pred ChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 048737 79 DSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQM 127 (274)
Q Consensus 79 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (274)
++++|...++..... ......+....++|.+.|++++|...|+..
T Consensus 100 ~~d~Al~~L~~~~~~----~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 100 QYDEALATLQQIPDE----AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CHHHHHHHHHhccCc----chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 999999999775433 345567778889999999999999999864
No 129
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.50 E-value=0.00039 Score=63.58 Aligned_cols=266 Identities=9% Similarity=-0.016 Sum_probs=165.0
Q ss_pred cccchHHHHHHHHHHHhccCCC----Cch--HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCH----HHHHHHHHH
Q 048737 4 KEGNVVEANKTFGEMVERFEWN----PEH--VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL----KFFSNALDI 73 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~----p~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~ 73 (274)
..|++++|...+........-. +.. ......+...+...|++++|...+++..+.--..+. ...+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 4678889888888765421110 101 122233345567889999999999988763111121 234556667
Q ss_pred HHhCCChhhHHHHHHHHHhcCCcc-Cc--cHHhHHHHHHHHHhcCChhhHHHHHHHHHhc----CCC--C-ChhhHHHHH
Q 048737 74 LVKLNDSTHTVQLWDIMVGIGFNL-MP--NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH----GAF--P-DSLTYNMIF 143 (274)
Q Consensus 74 ~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li 143 (274)
+...|+++.|...+++........ .+ ...++..+...+...|+++.|...+++.... +.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 788999999999998887532000 11 2345566677888999999999998876542 211 1 223345556
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCC--CCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCccHH--HH--HHHH
Q 048737 144 ECLIKNKKVHEVENFFHEMIKNE--WQPT--PLNCATAITMLLDADEPEFAIEIWNYILEN--GILPLEA--SA--NVLL 213 (274)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~--~~--~~l~ 213 (274)
..+...|++++|...+.+..... ..+. ...+..+...+...|+++.|.+.+...... ....... .. ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 66778899999999998876531 1121 234445666778899999999999887542 1111110 11 1122
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCccCH---HHHHHHHHHHHhcChh--HHHHHHHHHHHh
Q 048737 214 VGLRNLGRLSDVRRFAEEMLNRRILIYD---VTMQKLKKAFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 269 (274)
..+...|+.+.|..++............ ..+..+..++...|+. |...++.+....
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4455689999999998776543221111 1134566677777876 888888877653
No 130
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.49 E-value=2.4e-07 Score=46.98 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP 134 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 134 (274)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
No 131
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00015 Score=56.48 Aligned_cols=89 Identities=13% Similarity=-0.008 Sum_probs=62.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHH-HHHHHHhcCCcchHHHHHHHHHhCCCccCHHHH-HHHHHHHHh
Q 048737 176 TAITMLLDADEPEFAIEIWNYILENGILPLEASANV-LLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTM-QKLKKAFYN 253 (274)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~l~~~~~~ 253 (274)
.+.++++..|++.+|+++|-++..-.+ .|..+|.+ |.++|.+.+.++.|++++-.+.. +.+..+. ..+.+-|.+
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYK 473 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHH
Confidence 467788888999999999987765555 34456654 66888999999999887765543 2233333 335567888
Q ss_pred cChh--HHHHHHHHHHH
Q 048737 254 ESRS--MRDRFDSLERR 268 (274)
Q Consensus 254 ~g~~--a~~~~~~~~~~ 268 (274)
++++ |-+.|+.+...
T Consensus 474 ~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHHHHHhhhHHHcc
Confidence 8887 77777776543
No 132
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.46 E-value=3.9e-07 Score=46.14 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 048737 138 TYNMIFECLIKNKKVHEVENFFHEMIKNEWQP 169 (274)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 169 (274)
+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44555555555555555555555555444443
No 133
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.41 E-value=0.00044 Score=53.69 Aligned_cols=156 Identities=11% Similarity=0.026 Sum_probs=85.9
Q ss_pred HHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHh
Q 048737 74 LVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVH 153 (274)
Q Consensus 74 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 153 (274)
+...|+...|+.....+++.. +=|...+..-..+|...|++..|+.=+....+.. .-+..++-.+-..+...|+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~---~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ---PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC---cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHH
Confidence 334455555555555555532 2244445555556666666666665555544431 123444555555556666666
Q ss_pred HHHHHHHHHHhCCCCCCcch----HHHH---------HHHHHhcCChHHHHHHHHHHHHCCCCccH---HHHHHHHHHHH
Q 048737 154 EVENFFHEMIKNEWQPTPLN----CATA---------ITMLLDADEPEFAIEIWNYILENGILPLE---ASANVLLVGLR 217 (274)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~----~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 217 (274)
.++..+++.++. .||... |-.| +....+.++|.++....+...+....... ..+..+-.++.
T Consensus 241 ~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 241 NSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence 666666666553 344322 1111 22334556777777777776665433122 33444556667
Q ss_pred hcCCcchHHHHHHHHHhC
Q 048737 218 NLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 218 ~~g~~~~a~~~~~~m~~~ 235 (274)
..|++-+|+....+..+.
T Consensus 319 ~d~~~~eAiqqC~evL~~ 336 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDI 336 (504)
T ss_pred ccCCHHHHHHHHHHHHhc
Confidence 778888888888887764
No 134
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00019 Score=59.32 Aligned_cols=195 Identities=13% Similarity=0.073 Sum_probs=124.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHH
Q 048737 33 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLC 112 (274)
Q Consensus 33 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (274)
-+=++.+...+++++|.+...++...+ +-+...+..-+-+..+.+.+++|..+.+.-... ..+.+-+..=.-+..
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~----~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL----LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh----hhcchhhHHHHHHHH
Confidence 345677888999999999999999865 556777888888889999999998655433221 111111122233445
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-----------------------
Q 048737 113 NNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQP----------------------- 169 (274)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----------------------- 169 (274)
+.+..|+|+..++-... .|..+...-.+.+.+.|++++|.++|..+.+.+.+-
T Consensus 91 rlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 78899999999983322 234466677778889999999999999886543110
Q ss_pred ----CcchHHHHH---HHHHhcCChHHHHHHHHHHHHC-------C------CCccHH-HHHHHHHHHHhcCCcchHHHH
Q 048737 170 ----TPLNCATAI---TMLLDADEPEFAIEIWNYILEN-------G------ILPLEA-SANVLLVGLRNLGRLSDVRRF 228 (274)
Q Consensus 170 ----~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~-------~------~~~~~~-~~~~l~~~~~~~g~~~~a~~~ 228 (274)
...+|..+. ..+...|++.+|++++....+. + +.-... .--.+.-.+...|+.++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 011333322 2344567888888887776211 0 111111 122344455677888888888
Q ss_pred HHHHHhCC
Q 048737 229 AEEMLNRR 236 (274)
Q Consensus 229 ~~~m~~~~ 236 (274)
+...+..+
T Consensus 247 y~~~i~~~ 254 (652)
T KOG2376|consen 247 YVDIIKRN 254 (652)
T ss_pred HHHHHHhc
Confidence 87777764
No 135
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.36 E-value=1.2e-05 Score=51.06 Aligned_cols=92 Identities=10% Similarity=0.074 Sum_probs=44.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHH
Q 048737 33 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLC 112 (274)
Q Consensus 33 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (274)
..+...+...|++++|...+++..+.. +.+...+..+...+...++++.|.+.++...... +.+..++..+...+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~ 79 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD---PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcchhHHHHHHHHHH
Confidence 334444555555555555555554431 2223344444445555555555555555554443 223344444445555
Q ss_pred hcCChhhHHHHHHHHH
Q 048737 113 NNNDVDNVFRFFDQMV 128 (274)
Q Consensus 113 ~~~~~~~a~~~~~~~~ 128 (274)
..|+++.|...+....
T Consensus 80 ~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 80 KLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 5555555555554443
No 136
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.36 E-value=9.7e-06 Score=52.13 Aligned_cols=78 Identities=18% Similarity=0.423 Sum_probs=47.5
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCcc-CccHHhHHHHHHHHHhcC--------ChhhHHHHHHHHHhcCCCCChhhH
Q 048737 69 NALDILVKLNDSTHTVQLWDIMVGIGFNL-MPNLIMYNAVVGLLCNNN--------DVDNVFRFFDQMVFHGAFPDSLTY 139 (274)
Q Consensus 69 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 139 (274)
..|..|...+++...-.+|+.+++.| + .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~--i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNG--ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcC--CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34444555566666666666666666 5 666666666666655542 123445566666666666777777
Q ss_pred HHHHHHHHh
Q 048737 140 NMIFECLIK 148 (274)
Q Consensus 140 ~~li~~~~~ 148 (274)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 666666543
No 137
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.35 E-value=3.7e-05 Score=51.40 Aligned_cols=22 Identities=5% Similarity=0.220 Sum_probs=9.1
Q ss_pred HHHHHhccCcHHHHHHHHHHHh
Q 048737 35 FLITLIRGKQVDEALKFLRVMK 56 (274)
Q Consensus 35 li~~~~~~~~~~~a~~~~~~~~ 56 (274)
++..+.+.|++++|.+.|..+.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~ 29 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFL 29 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333444444444444444443
No 138
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.35 E-value=5.3e-05 Score=54.50 Aligned_cols=96 Identities=8% Similarity=0.002 Sum_probs=69.6
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHH
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT--LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLI 102 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 102 (274)
.|.....+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|+++.|...+++..+.. +.+..
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~ 107 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PKQPS 107 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHH
Confidence 334555677888888888999999999998876432222 3577788888888999999999998888864 44566
Q ss_pred hHHHHHHHHHhcCChhhHHHH
Q 048737 103 MYNAVVGLLCNNNDVDNVFRF 123 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~ 123 (274)
.+..+..++...|+...+..-
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhC
Confidence 677777777777765544433
No 139
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=5.4e-05 Score=57.45 Aligned_cols=195 Identities=13% Similarity=0.142 Sum_probs=144.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHH-HHH
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNA-VVG 109 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-l~~ 109 (274)
-+++.+..+.+..++..|++++..-.++. +-+......|..+|....++..|-..|+++... -|...-|.. -..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql----~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL----HPELEQYRLYQAQ 86 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----ChHHHHHHHHHHH
Confidence 36777888889999999999998877763 336777888999999999999999999999885 366555543 246
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCh
Q 048737 110 LLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC--LIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEP 187 (274)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (274)
.+.+.+.+.+|+++...|.+. |+...-..-+++ ....+++..+..+.++.... .+..+.+.......+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccH
Confidence 677889999999999998763 332222222222 34567888888888876532 2444555555556789999
Q ss_pred HHHHHHHHHHHH-CCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 048737 188 EFAIEIWNYILE-NGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRIL 238 (274)
Q Consensus 188 ~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 238 (274)
+.|.+-|+...+ .|..|- ..||..+ +..+.|+++.|++...+++++|+.
T Consensus 161 EaAvqkFqaAlqvsGyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHHHhhcCCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 999999999887 566554 5676554 456779999999999999987753
No 140
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.32 E-value=0.00032 Score=57.55 Aligned_cols=185 Identities=11% Similarity=0.109 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH---hCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHH
Q 048737 45 VDEALKFLRVMKGENCFPTLKFFSNALDILV---KLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVF 121 (274)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 121 (274)
.+++.++++.....-..-+..+|..+...-- ..+..+.....++++...- ...-..+|..+++.-.+..-...|.
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~--~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE--DIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh--ccCCceehhHHHHHHHHhhhHHHHH
Confidence 4566666666654322333444443332211 1123666777777777653 2223467888888888888899999
Q ss_pred HHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048737 122 RFFDQMVFHGAFP-DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT-PLNCATAITMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 122 ~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (274)
.+|.+..+.+..+ ++..+++++.-||. ++.+-|.++|+.-.+. -+| +.-....++.+...++-..+..+|++...
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 9999999887666 67788888887765 6788999999876653 234 34446778888889999999999999998
Q ss_pred CCCCcc--HHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 200 NGILPL--EASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 200 ~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
.++.|+ ...|..++..-+..|+...+.++-+++..
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 865544 47899999988999999999888777654
No 141
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.32 E-value=0.00031 Score=59.82 Aligned_cols=228 Identities=14% Similarity=0.115 Sum_probs=158.2
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcC-CCC---C-----------C---
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCF---P-----------T--- 63 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~---~-----------~--- 63 (274)
|+..++++.|.+...+..+- +-. +++..|..|+-.+.-.+++.+|+.+.+..... |.. . |
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l-~~~-~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALAL-NRG-DSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHh-cCC-ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHH
Confidence 45567888999888887663 222 37789999999999999999999999877653 110 0 0
Q ss_pred -HHHHHHHHHHHHh-----------------------CCChhhHHHHHHHHH--------hcC-------CccCc--c--
Q 048737 64 -LKFFSNALDILVK-----------------------LNDSTHTVQLWDIMV--------GIG-------FNLMP--N-- 100 (274)
Q Consensus 64 -~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~--------~~~-------~~~~~--~-- 100 (274)
..|...++..+-. ..+..++.+....+. ..+ +.+.| +
T Consensus 566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~ 645 (799)
T KOG4162|consen 566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSL 645 (799)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCch
Confidence 1122222221110 001111111111111 001 00111 1
Q ss_pred ----HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-cchHH
Q 048737 101 ----LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT-PLNCA 175 (274)
Q Consensus 101 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 175 (274)
...|......+.+.+..++|...+.+..+. .+.....|......+...|.+++|.+.|...... .|+ +...+
T Consensus 646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~ 722 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMT 722 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHH
Confidence 234666777888899999999888887765 2345677777778888899999999999988774 454 56889
Q ss_pred HHHHHHHhcCChHHHHH--HHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 176 TAITMLLDADEPEFAIE--IWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 176 ~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
++..++.+.|+...|.. ++..+.+.+. .+...|-.+-..+-+.|+.++|-+.|....+.
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999999999888888 9999998874 67889999999999999999999999987654
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.32 E-value=0.00045 Score=59.87 Aligned_cols=192 Identities=11% Similarity=0.060 Sum_probs=139.2
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhh
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (274)
.|.|+.++|..+++.... ..|+|..+...+-.+|-+.++.++|..+|++..+. -|+......+..+|.+.+++.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~---~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYG---LKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHhcCchhHHHHHhhhcc---CCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 578999999999988844 47778889999999999999999999999999874 5778888899999999998877
Q ss_pred HHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCC----------hhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCC
Q 048737 83 TVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNND----------VDNVFRFFDQMVFHG-AFPDSLTYNMIFECLIKNKK 151 (274)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~ 151 (274)
-.++--++-+. ++.+...+-++++.+.+.-. ..-|...++.+.+.+ ..-+..-...-...+...|+
T Consensus 129 qQkaa~~LyK~---~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k 205 (932)
T KOG2053|consen 129 QQKAALQLYKN---FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGK 205 (932)
T ss_pred HHHHHHHHHHh---CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhccc
Confidence 66665555553 45666777777776665422 223556666666543 22222223333445567889
Q ss_pred HhHHHHHH-HHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048737 152 VHEVENFF-HEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI 202 (274)
Q Consensus 152 ~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 202 (274)
+++|++++ ....+.-..-+...-+.-+..+...+++.+..++..++...|.
T Consensus 206 ~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 206 YQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 99999999 4444433333444555677888889999999999999888773
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.31 E-value=4.4e-05 Score=51.06 Aligned_cols=102 Identities=9% Similarity=-0.035 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CChhhHHHH
Q 048737 65 KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAF--PDSLTYNMI 142 (274)
Q Consensus 65 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 142 (274)
.++..+...+.+.|++++|.+.|+.+.+...+.+.....+..+..++.+.|+++.|...|+.+...... ....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 455667777788888888888888888754111222456677888888888888888888888764321 124567777
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCC
Q 048737 143 FECLIKNKKVHEVENFFHEMIKNE 166 (274)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~~ 166 (274)
..++...|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 778888888888888888887753
No 144
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=0.0012 Score=54.04 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=49.0
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChh
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDST 81 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 81 (274)
+.+|+++.|..+|.+.. .+.|.|...|..-..+|+..|++++|++=-.+.++ +.|+ +..|.....++.-.|+++
T Consensus 13 ~s~~d~~~ai~~~t~ai---~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAI---MLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred cccccHHHHHHHHHHHH---ccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 45677777777777763 33666666666666666666666666555544443 2333 345555555555555555
Q ss_pred hHHHHHHHHH
Q 048737 82 HTVQLWDIMV 91 (274)
Q Consensus 82 ~a~~~~~~~~ 91 (274)
+|..-|.+-+
T Consensus 88 eA~~ay~~GL 97 (539)
T KOG0548|consen 88 EAILAYSEGL 97 (539)
T ss_pred HHHHHHHHHh
Confidence 5555554443
No 145
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.28 E-value=7.5e-05 Score=58.09 Aligned_cols=145 Identities=10% Similarity=0.107 Sum_probs=105.2
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-CCChhhHHHHHHHHHhcCCccCccHHhHHHHH
Q 048737 30 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK-LNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVV 108 (274)
Q Consensus 30 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 108 (274)
.+|-.+++..-+.+..+.|..+|.+.++.+ ..+...|......-.. .++.+.|.++|+...+. ++.+...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCCHHHHHHHH
Confidence 368888888888888999999999998643 3345555555444233 56777799999999886 577888899999
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 048737 109 GLLCNNNDVDNVFRFFDQMVFHGAFPDS---LTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITML 181 (274)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (274)
+.+.+.++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++..++.+. .|+...+..+++-|
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 9999999999999999998765 33222 48888888888889999999999888773 45545555554443
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.28 E-value=2.6e-05 Score=49.42 Aligned_cols=92 Identities=11% Similarity=0.127 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 048737 68 SNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 147 (274)
Q Consensus 68 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 147 (274)
..+...+...|+++.|...++++.+.. +.+...+..+..++...+++++|.+.++...+.. +.+..++..+...+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD---PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 334445555566666666666655543 2333445555555555566666666665555432 122344555555555
Q ss_pred hcCCHhHHHHHHHHHH
Q 048737 148 KNKKVHEVENFFHEMI 163 (274)
Q Consensus 148 ~~~~~~~a~~~~~~~~ 163 (274)
..|++++|...+....
T Consensus 80 ~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 80 KLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 5555555555555544
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.28 E-value=2.2e-05 Score=63.25 Aligned_cols=88 Identities=10% Similarity=0.037 Sum_probs=76.3
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhh
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (274)
...|++++|++.|++..+. .|.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|+++.
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 4678999999999999776 88888899999999999999999999999998753 4467788888899999999999
Q ss_pred HHHHHHHHHhcC
Q 048737 83 TVQLWDIMVGIG 94 (274)
Q Consensus 83 a~~~~~~~~~~~ 94 (274)
|...|++.++..
T Consensus 89 A~~~~~~al~l~ 100 (356)
T PLN03088 89 AKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHhC
Confidence 999999999865
No 148
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.28 E-value=3.4e-05 Score=53.34 Aligned_cols=91 Identities=5% Similarity=0.017 Sum_probs=44.9
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 048737 70 ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 149 (274)
Q Consensus 70 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 149 (274)
+...+...|++++|+++|+.+...+ +-+..-|-.|.-++-..|++++|+..|.......+ -|...+-.+..++...
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 3344445555555555555555543 23334444455555555555555555555544432 2344455555555555
Q ss_pred CCHhHHHHHHHHHHh
Q 048737 150 KKVHEVENFFHEMIK 164 (274)
Q Consensus 150 ~~~~~a~~~~~~~~~ 164 (274)
|+.+.|.+.|+..+.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555554443
No 149
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.27 E-value=3.2e-05 Score=60.12 Aligned_cols=131 Identities=11% Similarity=0.050 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHH-HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 048737 65 KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGL-LCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIF 143 (274)
Q Consensus 65 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 143 (274)
.+|..+++..-+.+.++.|..+|.++.+.+ ..+..+|-..... |...++.+.|.++|+...+. ...+...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~---~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK---RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHH
Confidence 467888888888888999999999998654 3344455555544 33356777799999998876 556788889999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048737 144 ECLIKNKKVHEVENFFHEMIKNEWQPTP---LNCATAITMLLDADEPEFAIEIWNYILEN 200 (274)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (274)
..+...++.+.|..+|++.... +.++. ..|...++.=.+.|+++.+..+.+++.+.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998865 32322 47888888888899999999999888874
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.25 E-value=1.5e-06 Score=42.91 Aligned_cols=28 Identities=21% Similarity=0.514 Sum_probs=12.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
+|++++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444433
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.24 E-value=6.4e-05 Score=60.61 Aligned_cols=104 Identities=7% Similarity=-0.002 Sum_probs=87.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhc
Q 048737 35 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNN 114 (274)
Q Consensus 35 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (274)
-...+...|++++|++.|++.++.. +-+...|..+..++...|+++.|...++++++.. +.+...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~---P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD---PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHh
Confidence 4566778899999999999999864 4567888899999999999999999999999976 55788899999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 048737 115 NDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 144 (274)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 144 (274)
|++++|...|++..+. .|+.......+.
T Consensus 84 g~~~eA~~~~~~al~l--~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASL--APGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 9999999999999885 455444444443
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.22 E-value=2e-06 Score=42.41 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 048737 138 TYNMIFECLIKNKKVHEVENFFHEMIKNE 166 (274)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (274)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 153
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.21 E-value=2.4e-05 Score=56.65 Aligned_cols=106 Identities=12% Similarity=0.028 Sum_probs=64.8
Q ss_pred CCChhhHHHHHHHHHhc-----CCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHH
Q 048737 133 FPDSLTYNMIFECLIKN-----KKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEA 207 (274)
Q Consensus 133 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 207 (274)
..|..+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+- |..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-
Confidence 34777788888777654 4555566667777777777778888888777654 2221 110
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh
Q 048737 208 SANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS 257 (274)
Q Consensus 208 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 257 (274)
.+.++..-| -.+.+-|++++++|...|+.||..|+..|++.+.+.+..
T Consensus 107 ~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 107 FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 111111101 123445677777777777777777777777777766655
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.20 E-value=5.8e-06 Score=51.69 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHHHhccCCCCc--hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhh
Q 048737 5 EGNVVEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (274)
.|+++.|+.+|+++.+. .|. +...+..+..++.+.|++++|+.++++ .+.+ +.+....-.+..++.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~---~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL---DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHH---HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHH---CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHH
Confidence 46677777777777665 331 334455567777777777777777766 2221 1122333344666667777777
Q ss_pred HHHHHHH
Q 048737 83 TVQLWDI 89 (274)
Q Consensus 83 a~~~~~~ 89 (274)
|.+++++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7776654
No 155
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.19 E-value=9.6e-05 Score=52.93 Aligned_cols=81 Identities=11% Similarity=-0.064 Sum_probs=41.5
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHH
Q 048737 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFP--TLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNA 106 (274)
Q Consensus 29 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (274)
...|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|...+++..... +....++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~---~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN---PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHH
Confidence 4445555555556666666666666655432111 12345555555666666666666666655532 223334444
Q ss_pred HHHHHH
Q 048737 107 VVGLLC 112 (274)
Q Consensus 107 l~~~~~ 112 (274)
+...+.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 444444
No 156
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.19 E-value=2.7e-05 Score=53.77 Aligned_cols=101 Identities=7% Similarity=0.030 Sum_probs=85.3
Q ss_pred CchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHH
Q 048737 26 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYN 105 (274)
Q Consensus 26 p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (274)
+++......+...+...|++++|.++|+.+...+ +-+..-|-.|.-++-..|++++|...|....... +.|+..+-
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~---~ddp~~~~ 107 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK---IDAPQAPW 107 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCchHHH
Confidence 4467777778888899999999999999988754 3356667788888889999999999999999876 56788899
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 106 AVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
.+..++...|+.+.|.+.|+.....
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987765
No 157
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=0.00047 Score=59.52 Aligned_cols=197 Identities=12% Similarity=0.040 Sum_probs=120.1
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhc-CC--------CCCCHHHHHHHHH
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-EN--------CFPTLKFFSNALD 72 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~--------~~~~~~~~~~l~~ 72 (274)
|...|+.+.|.+-.+.++. ...|..+.+.|.+..+.+-|.-.+-.|.. +| ..|+ .+-....-
T Consensus 738 yvtiG~MD~AfksI~~IkS--------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKS--------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred EEEeccHHHHHHHHHHHhh--------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 5567889999888777654 34799999999999998888777766643 22 1122 22222333
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 048737 73 ILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKV 152 (274)
Q Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 152 (274)
.....|.+++|+.+|.+-.+.+ .|=+.|-..|.+++|.++-+.--.-. -..||.....-+...+|.
T Consensus 809 LAieLgMlEeA~~lYr~ckR~D-----------LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRYD-----------LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH-----------HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccH
Confidence 4457788899999988876543 33355666788888888765432211 235666666666677777
Q ss_pred hHHHHHHHHHH----------hCC---------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHH
Q 048737 153 HEVENFFHEMI----------KNE---------WQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLL 213 (274)
Q Consensus 153 ~~a~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 213 (274)
+.|++.|++.. ... -..|...|.-.....-..|+.+.|+.+|....+ |-+++
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~V 945 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMV 945 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhe
Confidence 77777776431 110 122334444555555567777777777766543 23334
Q ss_pred HHHHhcCCcchHHHHHH
Q 048737 214 VGLRNLGRLSDVRRFAE 230 (274)
Q Consensus 214 ~~~~~~g~~~~a~~~~~ 230 (274)
+..|-.|+.++|-++-+
T Consensus 946 rI~C~qGk~~kAa~iA~ 962 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAE 962 (1416)
T ss_pred eeEeeccCchHHHHHHH
Confidence 44444455555544433
No 158
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.18 E-value=5.8e-06 Score=49.35 Aligned_cols=63 Identities=22% Similarity=0.243 Sum_probs=47.7
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 70 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 70 (274)
.+.|++++|+++|+++... .|++...+..++.+|.+.|++++|.++++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 3578888888888888776 7878888888888888888888888888888774 3564444444
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.17 E-value=4.2e-06 Score=52.33 Aligned_cols=82 Identities=9% Similarity=0.196 Sum_probs=41.9
Q ss_pred CCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHH
Q 048737 77 LNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVE 156 (274)
Q Consensus 77 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 156 (274)
.|+++.|..+++++.+.... .++...+..+..+|.+.|++++|..++++ .+.+. .+......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 35566666666666654300 11334444456666666666666666665 22211 12233334456666666666666
Q ss_pred HHHHH
Q 048737 157 NFFHE 161 (274)
Q Consensus 157 ~~~~~ 161 (274)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.16 E-value=0.00055 Score=52.03 Aligned_cols=184 Identities=11% Similarity=0.040 Sum_probs=105.2
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHH---HHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF---FSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMY 104 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (274)
++..+......+.+.|++++|++.|+++...- +-+... .-.+..++.+.++++.|...+++.++...+. | ...+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~-~-~~~~ 107 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH-P-NIDY 107 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC-C-chHH
Confidence 34445556777788999999999999998753 222222 2456788899999999999999999875211 1 2223
Q ss_pred HHHHHHHH--hcC---------------C---hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 105 NAVVGLLC--NNN---------------D---VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 105 ~~l~~~~~--~~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
-..+.+.+ ..+ | ..+|+..|+++.+. -|+.. -..+|...+..+..
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~-------------ya~~A~~rl~~l~~ 172 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQ-------------YTTDATKRLVFLKD 172 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCCh-------------hHHHHHHHHHHHHH
Confidence 33333322 111 2 23466667776664 34432 12233322222221
Q ss_pred CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 048737 165 NEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN--GILPLEASANVLLVGLRNLGRLSDVRRFAEEML 233 (274)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 233 (274)
. .-... -.+.+.|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++...+.
T Consensus 173 ~---la~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 173 R---LAKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred H---HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 00001 13455566667777777777776653 233344555566677777777777776665543
No 161
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.13 E-value=0.0013 Score=54.15 Aligned_cols=183 Identities=11% Similarity=0.095 Sum_probs=131.0
Q ss_pred hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcC---ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 048737 81 THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNN---DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVEN 157 (274)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 157 (274)
+++..++++.+..- ...+..+|..+.+---..- +.+...+.+++++..-..--..+|...+..-.+..-++.|..
T Consensus 310 ~e~~~~yEr~I~~l--~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 310 DEAASIYERAIEGL--LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHH
Confidence 45556666666543 3344555555544322222 366777788887765333335678888888888888999999
Q ss_pred HHHHHHhCCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 048737 158 FFHEMIKNEWQP-TPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 158 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 236 (274)
+|.++.+.+..+ +....++++..+| .++..-|.++|+--.+. ..-++.--...+..+...|+-..+..+|++....+
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 999999988777 6777888998887 56888899999865553 22333455678888899999999999999999986
Q ss_pred CccCH--HHHHHHHHHHHhcChh--HHHHHHHHHH
Q 048737 237 ILIYD--VTMQKLKKAFYNESRS--MRDRFDSLER 267 (274)
Q Consensus 237 ~~~~~--~~~~~l~~~~~~~g~~--a~~~~~~~~~ 267 (274)
+.|+. ..|..+|.-=+.-|+. +.++-++...
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66554 7899999988888988 4444444433
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.12 E-value=0.00016 Score=51.78 Aligned_cols=83 Identities=5% Similarity=-0.080 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 048737 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIF 143 (274)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 143 (274)
...+..+...+...|++++|...|++......+......++..+..++...|++++|...+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 34445555566666777777777766665430000123456666666666666666666666665531 11233444444
Q ss_pred HHHH
Q 048737 144 ECLI 147 (274)
Q Consensus 144 ~~~~ 147 (274)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 163
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.0032 Score=51.76 Aligned_cols=213 Identities=11% Similarity=0.083 Sum_probs=129.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH----
Q 048737 32 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV---- 107 (274)
Q Consensus 32 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l---- 107 (274)
...+.+..-+..+++.|++.+....+.. -+..-++..-.++...|.+......-+..++.| .-...-|+.+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g---re~rad~klIak~~ 301 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG---RELRADYKLIAKAL 301 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh---HHHHHHHHHHHHHH
Confidence 3445566666666666666666666543 344444555556666666665555555555544 1112222222
Q ss_pred ---HHHHHhcCChhhHHHHHHHHHhcCCCCChhh-------------------------HHHHHHHHHhcCCHhHHHHHH
Q 048737 108 ---VGLLCNNNDVDNVFRFFDQMVFHGAFPDSLT-------------------------YNMIFECLIKNKKVHEVENFF 159 (274)
Q Consensus 108 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~li~~~~~~~~~~~a~~~~ 159 (274)
..+|.+.++++.|+..|++.+.....|+..+ .-.-...+.+.|++..|...|
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 2234445566666666666544333333211 111244567789999999999
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCcc
Q 048737 160 HEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILI 239 (274)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 239 (274)
.+++... +-|...|..-.-+|.+.|.+..|..-.+...+.+. +....|..=..++....++++|.+.|.+..+.+ |
T Consensus 382 teAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p 457 (539)
T KOG0548|consen 382 TEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALELD--P 457 (539)
T ss_pred HHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--c
Confidence 9988875 55678899999999999999999888877777642 444555555566666678899999998888764 5
Q ss_pred CHHHHHHHHHHHHh
Q 048737 240 YDVTMQKLKKAFYN 253 (274)
Q Consensus 240 ~~~~~~~l~~~~~~ 253 (274)
+..-+.--+.-|..
T Consensus 458 ~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 458 SNAEAIDGYRRCVE 471 (539)
T ss_pred hhHHHHHHHHHHHH
Confidence 54444444444443
No 164
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.00025 Score=54.06 Aligned_cols=102 Identities=9% Similarity=0.019 Sum_probs=57.2
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC---CChhhHHHHHHHHHhcCCccCccH
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL---NDSTHTVQLWDIMVGIGFNLMPNL 101 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~ 101 (274)
+|.|+..|-.|...|...|+.+.|..-|.+..+. -++++..+..+..++... ..-.++..+|+++...+ +.|+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D---~~~i 227 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD---PANI 227 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC---CccH
Confidence 5666666666666666666666666666666553 133444444444443322 12345556666666654 4445
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 102 IMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
.+...|...+...|++.+|...|+.|.+.
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55555555666666666666666666654
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.08 E-value=0.0029 Score=49.44 Aligned_cols=198 Identities=12% Similarity=0.076 Sum_probs=122.1
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHhcC----CCCC-CHHHHHHHHHHHHhCCChhhHHHHHHHHHh----cCCccCc
Q 048737 29 VLAYETFLITLIRGKQVDEALKFLRVMKGE----NCFP-TLKFFSNALDILVKLNDSTHTVQLWDIMVG----IGFNLMP 99 (274)
Q Consensus 29 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 99 (274)
...|......|...|++++|.+.|.+.... +-+. -...|.....+|.+ .+++.|...+++... .| .|
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G---~~ 110 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG---RF 110 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT----H
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC---cH
Confidence 345777788888889999999988876432 1111 12344555555544 488899888888764 34 33
Q ss_pred c--HHhHHHHHHHHHhc-CChhhHHHHHHHHHhc----CCCCC--hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 048737 100 N--LIMYNAVVGLLCNN-NDVDNVFRFFDQMVFH----GAFPD--SLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT 170 (274)
Q Consensus 100 ~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 170 (274)
+ ...+..+...|... |++++|.+.|++..+. | .+. ..++..+...+.+.|++++|.++|++....-...+
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence 3 44677788888888 8999999999886542 2 111 34566778888999999999999998876532221
Q ss_pred -----cc-hHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCcc--HHHHHHHHHHHHhcCCcchHHHHHHHH
Q 048737 171 -----PL-NCATAITMLLDADEPEFAIEIWNYILENG--ILPL--EASANVLLVGLRNLGRLSDVRRFAEEM 232 (274)
Q Consensus 171 -----~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m 232 (274)
.. .|-..+-++...||+..|...+++..... +..+ ......|+.+| ..|+.+...+.+.+.
T Consensus 190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEY 260 (282)
T ss_dssp TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHH
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 11 23334446667889999999999887642 2212 33445555554 445555555444444
No 166
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.07 E-value=0.00099 Score=58.63 Aligned_cols=180 Identities=8% Similarity=-0.028 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHH
Q 048737 8 VVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLW 87 (274)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 87 (274)
...|+..|-+.. .+.|.-...|..|...|....+...|.+.|+...+.+ ..+......+...|+...+++.|..+.
T Consensus 474 ~~~al~ali~al---rld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 474 SALALHALIRAL---RLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHH---hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 344444443332 2355445577777777777777777777777776643 334556666777777777777777774
Q ss_pred HHHHhcCCccCcc--HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 048737 88 DIMVGIGFNLMPN--LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 88 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (274)
-..-+.. +.- ...|....-.|...++..+|+.-|+......+ .|...|..+..+|-+.|++..|.++|.+....
T Consensus 550 l~~~qka---~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 550 LRAAQKA---PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHhhhc---hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 3333322 111 12233333446666777777777777766532 36677777888888888888888888776652
Q ss_pred CCCCCcchHHHH--HHHHHhcCChHHHHHHHHHHH
Q 048737 166 EWQPTPLNCATA--ITMLLDADEPEFAIEIWNYIL 198 (274)
Q Consensus 166 ~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~ 198 (274)
.|+. +|... .-.-+..|.+.+|...+....
T Consensus 626 --rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 626 --RPLS-KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred --CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3432 22222 222345677777777766654
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=7.7e-05 Score=56.59 Aligned_cols=87 Identities=11% Similarity=0.097 Sum_probs=42.9
Q ss_pred HhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChh
Q 048737 39 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVD 118 (274)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (274)
+.+.+++.+|+..|.+.++.. +-|..-|..-..+|.+.|.++.|.+--+..+..+ +....+|..|-.+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD---p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID---PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHccCcHH
Confidence 344455555555555555431 2334444444555555555555555555554433 223445555555555555555
Q ss_pred hHHHHHHHHHh
Q 048737 119 NVFRFFDQMVF 129 (274)
Q Consensus 119 ~a~~~~~~~~~ 129 (274)
+|++.|++.++
T Consensus 167 ~A~~aykKaLe 177 (304)
T KOG0553|consen 167 EAIEAYKKALE 177 (304)
T ss_pred HHHHHHHhhhc
Confidence 55555555544
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.05 E-value=0.0002 Score=60.39 Aligned_cols=144 Identities=10% Similarity=0.033 Sum_probs=102.9
Q ss_pred CCchHhHHHHHHHHHh-----ccCcHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhC--------CChhhHHHHHHHH
Q 048737 25 NPEHVLAYETFLITLI-----RGKQVDEALKFLRVMKGENCFPT-LKFFSNALDILVKL--------NDSTHTVQLWDIM 90 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~-----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~ 90 (274)
.|.+..+|...+.+.. ..++...|..+|++..+.. |+ ...+..+..++... .++..+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4558888888887753 3588999999999999853 55 44444443333221 1234445555554
Q ss_pred HhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 048737 91 VGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT 170 (274)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 170 (274)
..... .+.+...|.++.-.....|++++|...+++.... .|+...|..+...+...|+.++|.+.+++.... .|.
T Consensus 411 ~al~~-~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 411 VALPE-LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hhccc-CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 44210 2445677888877777789999999999999986 478889999999999999999999999998874 466
Q ss_pred cchHH
Q 048737 171 PLNCA 175 (274)
Q Consensus 171 ~~~~~ 175 (274)
..+|.
T Consensus 486 ~pt~~ 490 (517)
T PRK10153 486 ENTLY 490 (517)
T ss_pred CchHH
Confidence 66654
No 169
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.0024 Score=56.61 Aligned_cols=158 Identities=12% Similarity=0.076 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048737 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 145 (274)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (274)
.|..+..+-.+.|.+.+|.+-|-+. .|+..|..+++...+.|.|++-.+++....+..-+|.+ =+.+|-+
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~A 1175 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFA 1175 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHH
Confidence 4444444444444444444333211 13344555555555555555555555444443322222 2344445
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchH
Q 048737 146 LIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDV 225 (274)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 225 (274)
|.+.++..+.++++ .-||......+.+-|...+.++.|.-+|.. +.-|..|...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 55555544433332 124444444445555555555544444432 23445555555556665555
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 048737 226 RRFAEEMLNRRILIYDVTMQKLKKAFYNES 255 (274)
Q Consensus 226 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 255 (274)
.+.-++.. +..||..+-.+|...+
T Consensus 1240 VD~aRKAn------s~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1240 VDAARKAN------STKTWKEVCFACVDKE 1263 (1666)
T ss_pred HHHhhhcc------chhHHHHHHHHHhchh
Confidence 54433321 3344554444554443
No 170
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.04 E-value=0.00064 Score=45.31 Aligned_cols=106 Identities=9% Similarity=-0.006 Sum_probs=62.1
Q ss_pred HHHHHHhccCcHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCc---cHHhHHHHH
Q 048737 34 TFLITLIRGKQVDEALKFLRVMKGENCFPT--LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMP---NLIMYNAVV 108 (274)
Q Consensus 34 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~ 108 (274)
.+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++...... +. +......+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHH
Confidence 355566667777777777777777665443 2345556666777777777777777776642 11 222223333
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048737 109 GLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 146 (274)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 146 (274)
.++...|+.++|++.+-.... ++...|..-|..|
T Consensus 83 l~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 456666777777776655543 2333444444444
No 171
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.03 E-value=0.00088 Score=58.93 Aligned_cols=183 Identities=10% Similarity=0.024 Sum_probs=129.7
Q ss_pred cHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHH
Q 048737 44 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123 (274)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 123 (274)
+...|+..|-+..+.... =...|..|...|...-+...|.+.|+.+.+.+ ..+...+....+.|++..+++.|..+
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD---atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD---ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chhhhhHHHHHHHhhccccHHHHHHH
Confidence 355666666555543211 13467788888887778889999999998876 56778888999999999999999988
Q ss_pred HHHHHhcC-CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048737 124 FDQMVFHG-AFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI 202 (274)
Q Consensus 124 ~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 202 (274)
.-..-+.. ...-...|....-.|...++..++..-|....+.. +.|...|..+..+|.+.|++..|.++|.+.....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr- 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR- 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-
Confidence 43332221 01112233444445677888888888888877654 4467789999999999999999999999887744
Q ss_pred CccHHHHHHH--HHHHHhcCCcchHHHHHHHHHh
Q 048737 203 LPLEASANVL--LVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 203 ~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
|+. .|... ....+..|.+.++.+.+...+.
T Consensus 627 -P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 -PLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 442 33332 2335678999999998888764
No 172
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0035 Score=55.66 Aligned_cols=219 Identities=10% Similarity=0.071 Sum_probs=131.9
Q ss_pred cchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHH
Q 048737 6 GNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQ 85 (274)
Q Consensus 6 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 85 (274)
+.+++|.+.-++.. .+..|..+..+-.+.|.+.+|++-|-+. -|+..|..++....+.|.+++-.+
T Consensus 1089 ~~ldRA~efAe~~n--------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred hhHHHHHHHHHhhC--------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 56667766555442 3468999999999999999998877332 367889999999999999999999
Q ss_pred HHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHh-
Q 048737 86 LWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK- 164 (274)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 164 (274)
++....+.. -.|. +=+.|+-+|++.++..+.++++. -||......+..-|...+.++.|.-+|.....
T Consensus 1155 yL~MaRkk~--~E~~--id~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~ 1223 (1666)
T KOG0985|consen 1155 YLLMARKKV--REPY--IDSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNF 1223 (1666)
T ss_pred HHHHHHHhh--cCcc--chHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhH
Confidence 988887765 3444 44678888998888777655441 24444444444444444444444333322110
Q ss_pred ------------------C-CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchH
Q 048737 165 ------------------N-EWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDV 225 (274)
Q Consensus 165 ------------------~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 225 (274)
. .-..+..||..+-.+|...+.+.-|. |-..++.....-..-++..|...|-+++.
T Consensus 1224 a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1224 AKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHH
Confidence 0 00123445555555555555444332 22233344455666777888888888887
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 048737 226 RRFAEEMLNRRILIYDVTMQKLKKAFYNES 255 (274)
Q Consensus 226 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 255 (274)
+.+++.-.... ....-.|+-|.-.|++-.
T Consensus 1299 Isl~Ea~LGLE-RAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1299 ISLLEAGLGLE-RAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred HHHHHhhhchh-HHHHHHHHHHHHHHHhcC
Confidence 77776543221 112234444444454443
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.02 E-value=1.5e-05 Score=47.07 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=27.1
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhc
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 57 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 57 (274)
+.|++++|++.|+++.+. .|.+..+|..+..++...|++++|...|+++.+
T Consensus 9 ~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HCTHHHHHHHHHHHHHCC---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555444 455555555555555555555555555555543
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.00 E-value=0.00099 Score=47.90 Aligned_cols=90 Identities=9% Similarity=0.048 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCc--cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHH
Q 048737 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMP--NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNM 141 (274)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (274)
...+..+...+...|++++|...|++..+.. ..+ ....+..+..++.+.|++++|...+++...... -+...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLE--EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHH
Confidence 4456777788888899999999999888754 122 246788888888999999999999988877532 24566666
Q ss_pred HHHHHHhcCCHhHHH
Q 048737 142 IFECLIKNKKVHEVE 156 (274)
Q Consensus 142 li~~~~~~~~~~~a~ 156 (274)
+...+...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 777777777654443
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.98 E-value=0.0015 Score=55.31 Aligned_cols=138 Identities=9% Similarity=-0.063 Sum_probs=81.0
Q ss_pred CCCCCHHHHHHHHHHHHhC-----CChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcC--------ChhhHHHHHH
Q 048737 59 NCFPTLKFFSNALDILVKL-----NDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNN--------DVDNVFRFFD 125 (274)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~ 125 (274)
+.+.+...|...+.+.... ++...|..+|+++++.. |-....|..+..++.... +...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld---P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE---PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456677777777765432 23667888888888864 333444554444333221 1223333333
Q ss_pred HHHhc-CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048737 126 QMVFH-GAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENG 201 (274)
Q Consensus 126 ~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (274)
+.... ....+...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++....+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 32221 122344556666555556677777777777777654 566677777777777777777777777766643
No 176
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.96 E-value=0.00014 Score=52.87 Aligned_cols=103 Identities=14% Similarity=0.177 Sum_probs=71.2
Q ss_pred hHhHHHHHHHHHhcc-----CcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHH
Q 048737 28 HVLAYETFLITLIRG-----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLI 102 (274)
Q Consensus 28 ~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 102 (274)
+-.+|..++..+.+. |..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+--.
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h--------- 114 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH--------- 114 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc---------
Confidence 667777777777544 6677777777888888888888888888887654 3321 22222222211
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKK 151 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 151 (274)
| -.+-+-|++++++|+..|+-||..++..+++.+++.+.
T Consensus 115 --------y--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 --------Y--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred --------C--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1 12356678899999999999999999999999887764
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00023 Score=54.12 Aligned_cols=103 Identities=12% Similarity=0.171 Sum_probs=87.1
Q ss_pred HHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcC
Q 048737 72 DILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD-SLTYNMIFECLIKNK 150 (274)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~ 150 (274)
+-+.+.+++.+|...|.++++.. +.|.+-|..-..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~---P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD---PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccC
Confidence 45667899999999999999975 667888889999999999999999999888774 344 789999999999999
Q ss_pred CHhHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 048737 151 KVHEVENFFHEMIKNEWQPTPLNCATAITML 181 (274)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (274)
++++|++.|.+.++ +.|+..+|-.=+...
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 99999999999887 578887776555443
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.93 E-value=0.0047 Score=47.00 Aligned_cols=179 Identities=7% Similarity=-0.012 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhH---HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH
Q 048737 63 TLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMY---NAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTY 139 (274)
Q Consensus 63 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (274)
+...+-.....+...|+++.|.+.|+.+.... +-+...- -.+..++.+.++++.|...+++..+..+.-...-|
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y---P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY---PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 33334345555667899999999999999864 3233332 45667889999999999999999886432223344
Q ss_pred HHHHHHHHh--cC---------------CH---hHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048737 140 NMIFECLIK--NK---------------KV---HEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 140 ~~li~~~~~--~~---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (274)
...+.+.+. .+ |. .+|...|+.++ +-|-...-..+|..-+..+..
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~ 172 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKD 172 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHH
Confidence 444444331 11 11 22333444443 333333344455544444433
Q ss_pred CCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCccCHHHHHHHHHHHHhcChh--HHHHHH
Q 048737 200 NGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR--RILIYDVTMQKLKKAFYNESRS--MRDRFD 263 (274)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~--a~~~~~ 263 (274)
. + - ..--.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|.. |.....
T Consensus 173 ~-l--a-~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 173 R-L--A-KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred H-H--H-HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 1 0 0 11124567789999999999999999875 4455667788899999999877 544443
No 179
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.90 E-value=0.002 Score=55.23 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=53.1
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048737 112 CNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAI 191 (274)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 191 (274)
.+..+|.+|+.+++.+.+.. .-..-|..+...|...|+++.|+++|-+.- .++-.|..|.+.|+|..|.
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence 34445555555555554431 123334555555666666666665553321 2334555566666666665
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHH
Q 048737 192 EIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAE 230 (274)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 230 (274)
++-.+. .|.......|-+-..-+-.+|++.+|.++|-
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 554332 2333344445444445555566666655544
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.86 E-value=8e-05 Score=44.34 Aligned_cols=51 Identities=10% Similarity=0.086 Sum_probs=23.9
Q ss_pred hCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 76 KLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 76 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
+.|++++|.++|+.+.... |-+...+..+..+|.+.|++++|..+++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555554443 33444444445555555555555555554444
No 181
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.86 E-value=0.0019 Score=55.32 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=72.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhc
Q 048737 35 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNN 114 (274)
Q Consensus 35 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (274)
-+.+....++|.+|+.+++.+..+. .-..-|..+..-|...|+++.|+++|-+. ..++-.|.+|.+.
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~-----------~~~~dai~my~k~ 804 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA-----------DLFKDAIDMYGKA 804 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc-----------chhHHHHHHHhcc
Confidence 4556667778888888888776653 22344666777788888888888777543 1345567778888
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 048737 115 NDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFH 160 (274)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (274)
|+|++|.++-.+.. |.......|..-..-+-..|++.+|+++|-
T Consensus 805 ~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred ccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 88888887766553 334445556555555666666666666553
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.85 E-value=0.0045 Score=44.02 Aligned_cols=128 Identities=13% Similarity=0.071 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCChhhH
Q 048737 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGA-FPDSLTY 139 (274)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 139 (274)
.|+...--.|..+....|+..+|...|++...-- +--|....-.+.++....+++..|...++++-+... .-++.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~--fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGI--FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc--cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3444444555556666666666666666655433 344555555555566666666666666665544320 0012334
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHH
Q 048737 140 NMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIE 192 (274)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 192 (274)
-.+.+.+...|.+..|+.-|+...+. -|+...-......+.+.|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 44455555566666666666655552 3444433333444445555444443
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.83 E-value=0.00013 Score=42.91 Aligned_cols=50 Identities=8% Similarity=0.194 Sum_probs=19.1
Q ss_pred HhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 048737 75 VKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQM 127 (274)
Q Consensus 75 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (274)
.+.|++++|...|+++++.. +-+...+..+..++.+.|++++|...|+++
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQD---PDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444444444332 223333333334444444444444444433
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.80 E-value=0.00018 Score=42.94 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=9.1
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHh
Q 048737 69 NALDILVKLNDSTHTVQLWDIMVG 92 (274)
Q Consensus 69 ~l~~~~~~~~~~~~a~~~~~~~~~ 92 (274)
.+...+...|++++|+..|++.++
T Consensus 8 ~~g~~~~~~~~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 8 NLGQIYFQQGDYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.80 E-value=0.0022 Score=47.45 Aligned_cols=63 Identities=10% Similarity=0.059 Sum_probs=35.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhc
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKGEN--CFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGI 93 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 93 (274)
.+-.....+...|++.+|++.|+.+...- -+--....-.++.++.+.|+++.|...+++.++.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445556666677777777777666531 1111334445566666777777777777776664
No 186
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.78 E-value=0.0012 Score=46.10 Aligned_cols=70 Identities=13% Similarity=0.252 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCCCCcch
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK-----NEWQPTPLN 173 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 173 (274)
+...++..+...|+++.|..+.+.+.... +.|...|..+|.+|...|+...|.+.|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44555556666666666666666666543 23566666666666666666666666666532 366665544
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0046 Score=47.39 Aligned_cols=102 Identities=5% Similarity=-0.011 Sum_probs=77.3
Q ss_pred CccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---CHhHHHHHHHHHHhCCCCCCcchH
Q 048737 98 MPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK---KVHEVENFFHEMIKNEWQPTPLNC 174 (274)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 174 (274)
+-|...|-.|...|...|+.+.|...|.+..+.. .+|...+..+..++.... ...++..+|+++.... +.|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 6678889999999999999999999998887752 345666666666655433 3457888888888754 3455666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048737 175 ATAITMLLDADEPEFAIEIWNYILENG 201 (274)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (274)
..|...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 677778888899999999999888865
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.77 E-value=0.0044 Score=41.35 Aligned_cols=53 Identities=8% Similarity=0.049 Sum_probs=21.5
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 111 LCNNNDVDNVFRFFDQMVFHGAFPD--SLTYNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
+-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444333222 2233333344444444444444444443
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.70 E-value=0.0047 Score=48.30 Aligned_cols=193 Identities=10% Similarity=0.076 Sum_probs=115.3
Q ss_pred cHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCc--cC-ccHHhHHHHHHHHHhcCChhhH
Q 048737 44 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFN--LM-PNLIMYNAVVGLLCNNNDVDNV 120 (274)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~a 120 (274)
++++|..+|++. ...|-..+++++|...|.+....... -+ .-...|.....+|.+. ++++|
T Consensus 30 ~~e~Aa~~y~~A---------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~A 93 (282)
T PF14938_consen 30 DYEEAADLYEKA---------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEA 93 (282)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHH
T ss_pred CHHHHHHHHHHH---------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHH
Confidence 666666666543 45555667777777666665432100 01 1123344444444444 77777
Q ss_pred HHHHHHHHh----cCCCCC--hhhHHHHHHHHHhc-CCHhHHHHHHHHHHhC----CCCCC--cchHHHHHHHHHhcCCh
Q 048737 121 FRFFDQMVF----HGAFPD--SLTYNMIFECLIKN-KKVHEVENFFHEMIKN----EWQPT--PLNCATAITMLLDADEP 187 (274)
Q Consensus 121 ~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~ 187 (274)
...+++... .| .|+ ...+..+...|... |++++|.+.|.+..+. + .+. ...+..+...+.+.|++
T Consensus 94 i~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 94 IECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCH
Confidence 777776543 22 222 34566677778787 8999999999987643 3 111 23566778889999999
Q ss_pred HHHHHHHHHHHHCCC-----CccHH-HHHHHHHHHHhcCCcchHHHHHHHHHhC--CCccC--HHHHHHHHHHHHhc
Q 048737 188 EFAIEIWNYILENGI-----LPLEA-SANVLLVGLRNLGRLSDVRRFAEEMLNR--RILIY--DVTMQKLKKAFYNE 254 (274)
Q Consensus 188 ~~a~~~~~~~~~~~~-----~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~--~~~~~~l~~~~~~~ 254 (274)
++|.++|++....-. +.+.. .+-..+-++...||...|...+++.... ++..+ ......|+.++-..
T Consensus 172 ~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 999999999876432 22232 2334445667789999999999998765 33322 34556677777543
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.69 E-value=0.00021 Score=42.64 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=55.0
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-ChhhHHHHHHHHHhc
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN-DSTHTVQLWDIMVGI 93 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 93 (274)
++..|..+...+...|++++|+..|++..+.. +-+...|..+..++...| ++++|.+.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56788899999999999999999999998864 446778888888899998 799999999988774
No 191
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.67 E-value=0.002 Score=44.88 Aligned_cols=71 Identities=21% Similarity=0.112 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHh-----CCCccCHHHH
Q 048737 173 NCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN-----RRILIYDVTM 244 (274)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~ 244 (274)
....++..+...|+++.|..+.+.+....+ .+...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 344566777788899999998888888663 6778888899999999999999888888743 4888887653
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.004 Score=46.81 Aligned_cols=132 Identities=10% Similarity=0.148 Sum_probs=85.4
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH--
Q 048737 67 FSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFE-- 144 (274)
Q Consensus 67 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-- 144 (274)
.+.++.++.-.+.+.-....+...++.. .+.++.....|.+.-.+.||.+.|...|++..+..-+.|..+++.++.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~--~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYY--PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhC--CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3455666666777777777787777765 455677777788888888888888888887766544444444444332
Q ss_pred ---HHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048737 145 ---CLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENG 201 (274)
Q Consensus 145 ---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (274)
.|.-.+++..|...+.+..... ..|+...|.=.-+..-.|+...|.+....|....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3444566777777777776543 2344444444444445677777888777777654
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.0054 Score=46.12 Aligned_cols=141 Identities=12% Similarity=0.109 Sum_probs=107.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHH--
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVV-- 108 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~-- 108 (274)
.-+.++..+...|.+.-...++.+.++..-+.++.....|++.-.+.|+.+.|...|++..+.. -..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~--~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT--QKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH--hhhhccchhHHHHh
Confidence 3466788888889999999999999998767788888999999999999999999999887654 344544444443
Q ss_pred ---HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHH
Q 048737 109 ---GLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCAT 176 (274)
Q Consensus 109 ---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 176 (274)
..|...+++..|...+++....+. .|+...|.=.-+....|+...|.+.++.|... .|...+-++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 446667889999999998887643 35555565555556678999999999999874 465554443
No 194
>PRK11906 transcriptional regulator; Provisional
Probab=97.61 E-value=0.0079 Score=49.14 Aligned_cols=148 Identities=9% Similarity=0.039 Sum_probs=83.2
Q ss_pred chHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhcc---------CcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 048737 7 NVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRG---------KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 77 (274)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (274)
..+.|+.+|.+......+.|....+|..+..++... ....+|.++.++..+.+ +-|+.....+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 345677777777633355676666666555444322 23345556666666554 44566666666666666
Q ss_pred CChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCCHhH
Q 048737 78 NDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS---LTYNMIFECLIKNKKVHE 154 (274)
Q Consensus 78 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~ 154 (274)
++++.|...|++....+ |....+|........-.|+.++|.+.+++..+. .|.. ...-..+..|+.++ .+.
T Consensus 352 ~~~~~a~~~f~rA~~L~---Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~ 425 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS---TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKN 425 (458)
T ss_pred cchhhHHHHHHHHhhcC---CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhh
Confidence 66777777777777654 333444555555555567777777777775543 2332 22223333554443 566
Q ss_pred HHHHHHH
Q 048737 155 VENFFHE 161 (274)
Q Consensus 155 a~~~~~~ 161 (274)
|.++|-+
T Consensus 426 ~~~~~~~ 432 (458)
T PRK11906 426 NIKLYYK 432 (458)
T ss_pred hHHHHhh
Confidence 6666543
No 195
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.016 Score=50.56 Aligned_cols=28 Identities=4% Similarity=0.195 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 243 TMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 243 ~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
....+...|.+.|.+ |-+-|.++-.+.+
T Consensus 1147 vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~ 1176 (1416)
T KOG3617|consen 1147 VLEQVAELCLQQGAYHAATKKFTQAGDKLS 1176 (1416)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhhhhHHH
Confidence 344556677788887 7777766655543
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.60 E-value=0.0026 Score=48.87 Aligned_cols=101 Identities=9% Similarity=0.036 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CCChhhHHHH
Q 048737 65 KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGA--FPDSLTYNMI 142 (274)
Q Consensus 65 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 142 (274)
..|...+....+.|++++|...|+.+++...+..-....+..+..+|...|++++|...|+.+.+.-. +.....+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34444444445556777777777777665310000124555666666777777777777777665311 1113344445
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhC
Q 048737 143 FECLIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~ 165 (274)
...+...|+.++|..+|+.+++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55566667777777777766653
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=97.60 E-value=0.0037 Score=43.68 Aligned_cols=103 Identities=8% Similarity=-0.015 Sum_probs=68.3
Q ss_pred CCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHH
Q 048737 23 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLI 102 (274)
Q Consensus 23 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 102 (274)
|+.++..........-+-..|++++|..+|..+...+ .-+..-+..|..++-..+++++|...|......+ ..|+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~---~~dp~ 106 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL---KNDYR 106 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---cCCCC
Confidence 4444444445555566667778888888777776643 2344555666666777777788877777776654 34555
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
.+-....+|...|+.+.|...|+....
T Consensus 107 p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 107 PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 566667777777777777777777665
No 198
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.56 E-value=0.028 Score=45.19 Aligned_cols=172 Identities=13% Similarity=0.085 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHhcC-CccCccHHhHHHHHHHHHh---cCChhhHHHHHHHHHhcCCCCChhh
Q 048737 63 TLKFFSNALDILVKLNDSTHTVQLWDIMVGIG-FNLMPNLIMYNAVVGLLCN---NNDVDNVFRFFDQMVFHGAFPDSLT 138 (274)
Q Consensus 63 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 138 (274)
+..+...++-+|....+++...++.+.+...- .++..+..+-....-++.+ .|+.++|+.++..+......++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34455567777889999999999999998752 0012233334455566677 8999999999999766667788899
Q ss_pred HHHHHHHHHhc---------CCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC-hH---HHHHHH---HH-HHHCC
Q 048737 139 YNMIFECLIKN---------KKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADE-PE---FAIEIW---NY-ILENG 201 (274)
Q Consensus 139 ~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~---~~-~~~~~ 201 (274)
|..+...|-.. ...++|+..|.+.-+. .||..+=..+...+...|. .+ +..++- .. +.+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 99888876542 2356777777766553 3554432222222333332 11 222222 22 21233
Q ss_pred ---CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 048737 202 ---ILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 202 ---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 236 (274)
-..+-..+.+++.+..-.|+.++|.+..++|.+..
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 33566778889999999999999999999999774
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.54 E-value=0.0005 Score=41.50 Aligned_cols=54 Identities=17% Similarity=0.120 Sum_probs=33.5
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcC
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 58 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 58 (274)
|.+.+++++|.++++.+... .|+++..|......+.+.|++++|.+.|+...+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALEL---DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHh---CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34556666666666666444 5656666666666666666666666666666653
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.51 E-value=0.017 Score=41.24 Aligned_cols=132 Identities=9% Similarity=0.003 Sum_probs=82.6
Q ss_pred CccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCcchHHH
Q 048737 98 MPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEW-QPTPLNCAT 176 (274)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 176 (274)
-|++.---.|..+..+.|+..+|...|++...--.--|....-.+.++....+++..|...++++.+... .-++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4666666667777777788888888887776543444566667777777777777777777777766431 012334455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHH
Q 048737 177 AITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEE 231 (274)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 231 (274)
+.+.+...|.+..|+..|+...+.- |+...-.-.-..+.+.|+.+++..-+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 6677777777777777777777643 3333333333445566665555443333
No 201
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.02 Score=45.91 Aligned_cols=222 Identities=14% Similarity=0.021 Sum_probs=125.0
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhh
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (274)
-+..++..|+..+....+. -|+++..|..-+..+...+++++|+--.++-.+.. +..+......-.++...++..+
T Consensus 60 yk~k~Y~nal~~yt~Ai~~---~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDM---CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred HHHhhHHHHHHHHHHHHHh---CccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHH
Confidence 3456778888888887665 77788888888888888888888887766655421 0111122222222222233222
Q ss_pred HHHHH---------------HHHHhcCCccCccHHhHHHHH-HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH-
Q 048737 83 TVQLW---------------DIMVGIGFNLMPNLIMYNAVV-GLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC- 145 (274)
Q Consensus 83 a~~~~---------------~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~- 145 (274)
|.+.+ +......+ -+|...+|-.+- .++.-.+++++|...--..++.. ....+...+++
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s-~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~ 211 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHS-REPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL 211 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhccccccc-CCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence 22222 22222221 123334444333 44556788888877776666542 12233333333
Q ss_pred -HHhcCCHhHHHHHHHHHHhCCCCCCcchHH-------------HHHHHHHhcCChHHHHHHHHHHHHC---CCCccHHH
Q 048737 146 -LIKNKKVHEVENFFHEMIKNEWQPTPLNCA-------------TAITMLLDADEPEFAIEIWNYILEN---GILPLEAS 208 (274)
Q Consensus 146 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~ 208 (274)
+...++.+.+...|.+.+..+ |+...-- .=.+-..+.|++..|.+.|.+.+.. +..|+...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 334566777777777766543 4432211 1123345667777888877777653 34556666
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 209 ANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 209 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
|.....+..+.|+.++|+.-.++..+
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhh
Confidence 66666677777777777777666554
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.46 E-value=0.0057 Score=47.04 Aligned_cols=86 Identities=14% Similarity=0.205 Sum_probs=36.6
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCCHhHHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcC
Q 048737 112 CNNNDVDNVFRFFDQMVFHGAFPDS----LTYNMIFECLIKNKKVHEVENFFHEMIKNE--WQPTPLNCATAITMLLDAD 185 (274)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 185 (274)
.+.|++++|...|+.+.+. .|+. ..+--+...|...|++++|...|..+.+.- .+.....+-.+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 3345555555555555443 1221 234444444455555555555555544321 0011122223333444445
Q ss_pred ChHHHHHHHHHHHH
Q 048737 186 EPEFAIEIWNYILE 199 (274)
Q Consensus 186 ~~~~a~~~~~~~~~ 199 (274)
+.+.|..+|+.+.+
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555544444
No 203
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.45 E-value=0.0042 Score=41.86 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=21.6
Q ss_pred cCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCCChhhHHHHHHH
Q 048737 97 LMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH-GAFPDSLTYNMIFEC 145 (274)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~ 145 (274)
..|+..+..+++.+|+..+++..|.++.+.+.+. +++.+..+|..|++-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444444444444444444444444444443322 333334444444443
No 204
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.44 E-value=0.0036 Score=42.16 Aligned_cols=50 Identities=8% Similarity=-0.003 Sum_probs=23.9
Q ss_pred CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCcchHHHHHHHH
Q 048737 132 AFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN-EWQPTPLNCATAITML 181 (274)
Q Consensus 132 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 181 (274)
..|+..+..+++.+|+..+++..|.++++...+. +++.+..+|..|++-+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3444555555555555555555555555544433 3444444444444433
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.39 E-value=0.0016 Score=39.20 Aligned_cols=52 Identities=4% Similarity=0.084 Sum_probs=21.2
Q ss_pred HhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 75 VKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 75 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
.+.++++.|.++++.++..+ |.+...|.....++.+.|++++|.+.|++..+
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD---PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC---cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444444444444432 22333333344444444444444444444433
No 206
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.32 E-value=0.00078 Score=41.26 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=34.2
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcC--CCCCC----HHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGE--NCFPT----LKFFSNALDILVKLNDSTHTVQLWDIMV 91 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 91 (274)
...+|+.+...|...|++++|++.|++..+. ...++ ..++..+..++...|++++|.+.+++..
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456666666666667776666666665532 01111 2344455555555555555555555544
No 207
>PRK15331 chaperone protein SicA; Provisional
Probab=97.31 E-value=0.018 Score=40.29 Aligned_cols=87 Identities=6% Similarity=0.014 Sum_probs=50.3
Q ss_pred HHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHh
Q 048737 74 LVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVH 153 (274)
Q Consensus 74 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 153 (274)
+...|++++|+.+|+-+...+ +-+..-|..|..++-..+++++|...|......+. -|...+--...+|...|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 345667777777776666654 23344455555556666666666666665444322 23444444555666666666
Q ss_pred HHHHHHHHHHh
Q 048737 154 EVENFFHEMIK 164 (274)
Q Consensus 154 ~a~~~~~~~~~ 164 (274)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 66666666555
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.30 E-value=0.01 Score=48.38 Aligned_cols=68 Identities=9% Similarity=-0.009 Sum_probs=60.1
Q ss_pred CCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhCCChhhHHHHHHHHHhc
Q 048737 24 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL----KFFSNALDILVKLNDSTHTVQLWDIMVGI 93 (274)
Q Consensus 24 ~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 93 (274)
..|++...|+.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|...++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46778999999999999999999999999998874 4663 35899999999999999999999999885
No 209
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.29 E-value=0.04 Score=40.79 Aligned_cols=172 Identities=8% Similarity=0.006 Sum_probs=96.4
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048737 67 FSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 146 (274)
Q Consensus 67 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 146 (274)
+-.....+...|++++|.+.|+.+.......+--....-.++.++.+.|+++.|...++++.+.-+.-....+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33445566788999999999999998642122334556677888999999999999999988753221222233333332
Q ss_pred HhcCC-------------HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHH
Q 048737 147 IKNKK-------------VHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLL 213 (274)
Q Consensus 147 ~~~~~-------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 213 (274)
+.-.. ..+|... +..++.-|-...-...|...+..+.+.- - ..--.+.
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~l---a-~~e~~ia 148 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNRL---A-EHELYIA 148 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHHH---H-HHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHHH---H-HHHHHHH
Confidence 22111 1223333 3344444444555555555554443310 0 1112245
Q ss_pred HHHHhcCCcchHHHHHHHHHhC--CCccCHHHHHHHHHHHHhcChh
Q 048737 214 VGLRNLGRLSDVRRFAEEMLNR--RILIYDVTMQKLKKAFYNESRS 257 (274)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~ 257 (274)
..|.+.|.+..|..-++.+++. +..........++.++.+.|..
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence 6678888888888888888775 2222234556677777777765
No 210
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.24 E-value=0.063 Score=41.93 Aligned_cols=225 Identities=11% Similarity=0.119 Sum_probs=124.1
Q ss_pred ccccchHHHHHHHHHHHhcc-CCCCchHh-----HHHHHHHHHhccC-cHHHHHHHHHHHhcC--------CCCCCH---
Q 048737 3 EKEGNVVEANKTFGEMVERF-EWNPEHVL-----AYETFLITLIRGK-QVDEALKFLRVMKGE--------NCFPTL--- 64 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~-~~~p~~~~-----~~~~li~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 64 (274)
.+.|+++.|...+.+..... ...|+... .|+ +.......+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn-~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYN-IGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHH-HHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46899999999999887642 33442222 233 233334445 888888777765432 123332
Q ss_pred --HHHHHHHHHHHhCCChh---hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH
Q 048737 65 --KFFSNALDILVKLNDST---HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTY 139 (274)
Q Consensus 65 --~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (274)
.++..++.++...+..+ +|.++.+.+.... +..+.++..-+..+.+.++.+.+.+.+.+|... +.-....+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~---~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~ 158 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY---GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchH
Confidence 35667778887777655 4555555664443 333556666677777788899999999999876 22234555
Q ss_pred HHHHHHHHh--cCCHhHHHHHHHHHHhCCCCCCcc-hHHH-HHH---HHHhcCC------hHHHHHHHHHHHH-CCCCcc
Q 048737 140 NMIFECLIK--NKKVHEVENFFHEMIKNEWQPTPL-NCAT-AIT---MLLDADE------PEFAIEIWNYILE-NGILPL 205 (274)
Q Consensus 140 ~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-l~~---~~~~~~~------~~~a~~~~~~~~~-~~~~~~ 205 (274)
..++..+.. ......+...+..+....+.|... .... ++. .....++ ++....++....+ .+.+.+
T Consensus 159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 555555422 223456667776666555555543 1111 111 1112111 3444444553332 222233
Q ss_pred HHHHHHH---H----HHHHhcCCcchHHHHHHHH
Q 048737 206 EASANVL---L----VGLRNLGRLSDVRRFAEEM 232 (274)
Q Consensus 206 ~~~~~~l---~----~~~~~~g~~~~a~~~~~~m 232 (274)
..+-.++ + ..+.+.++++.|..+|+-.
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3332222 2 2245678888888887743
No 211
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.20 E-value=0.076 Score=42.20 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=82.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLL 182 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (274)
+.+.-+.-+...|+...|.++-.+.. .|+..-|-..+.+++..++|++-.++-.. +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555666777888888888877764 37888999999999999999887765432 234678899999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHH
Q 048737 183 DADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEE 231 (274)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 231 (274)
+.|+..+|..+..+ + .+..-+..|.+.|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998887766 2 225567788889999988876544
No 212
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.18 E-value=0.11 Score=43.76 Aligned_cols=164 Identities=13% Similarity=0.104 Sum_probs=110.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhcCC-CCCCH-----HHHHHHHHHHHh----CCChhhHHHHHHHHHhcCCccCcc
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKGEN-CFPTL-----KFFSNALDILVK----LNDSTHTVQLWDIMVGIGFNLMPN 100 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 100 (274)
....++....-.|+-+.+++.+.+..+.+ +.... -.|...+..++. ..+.+.+.++++.+.+.- |+
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y----P~ 265 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY----PN 265 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC----CC
Confidence 45678888888999999999999877632 22211 133333333332 456788999999999864 66
Q ss_pred HHhHHHH-HHHHHhcCChhhHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHH
Q 048737 101 LIMYNAV-VGLLCNNNDVDNVFRFFDQMVFHG---AFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCAT 176 (274)
Q Consensus 101 ~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 176 (274)
...|... .+.+...|+.++|++.|++..... .......+-.+.-.+....+|++|...|..+.+.. .-+..+|.-
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y 344 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAY 344 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHH
Confidence 6665544 366778899999999999765321 11233445566667888899999999999998754 233344443
Q ss_pred HHH-HHHhcCCh-------HHHHHHHHHHHH
Q 048737 177 AIT-MLLDADEP-------EFAIEIWNYILE 199 (274)
Q Consensus 177 l~~-~~~~~~~~-------~~a~~~~~~~~~ 199 (274)
+.- ++...|+. ++|.+++.+...
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 333 33456777 888888877653
No 213
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.18 E-value=0.01 Score=39.66 Aligned_cols=90 Identities=19% Similarity=0.137 Sum_probs=55.1
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhCC
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL---KFFSNALDILVKLN 78 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~ 78 (274)
.+..|+++.|++.|.+...- -|..+.+||.-..++--.|+.++|++=+++..+..-.-+. ..|..-...|...|
T Consensus 53 laE~g~Ld~AlE~F~qal~l---~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL---APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHHh---cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34567777777777766443 5556667777777777777777777777766653211111 22333344555667
Q ss_pred ChhhHHHHHHHHHhcC
Q 048737 79 DSTHTVQLWDIMVGIG 94 (274)
Q Consensus 79 ~~~~a~~~~~~~~~~~ 94 (274)
+.+.|..=|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777766666
No 214
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.12 E-value=0.01 Score=45.19 Aligned_cols=111 Identities=8% Similarity=-0.006 Sum_probs=68.7
Q ss_pred CCChhhHHHHHHHHHhc-----CCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHH
Q 048737 133 FPDSLTYNMIFECLIKN-----KKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEA 207 (274)
Q Consensus 133 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 207 (274)
+-|..+|-..+..+... ++++=....++.|.+-|+.-|..+|+.|++.+-+.. +.|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-H
Confidence 34667777777776543 445555566677777788888888888777654321 2222 1
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChhHHHHH
Q 048737 208 SANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRSMRDRF 262 (274)
Q Consensus 208 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~a~~~~ 262 (274)
.+.....-|-+ +-+=+++++++|...|+.||..+-..|++++.+.+-..++++
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~ 179 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVK 179 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHH
Confidence 22222222322 223367788888888888888888888888877775533433
No 215
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.078 Score=40.82 Aligned_cols=154 Identities=9% Similarity=0.001 Sum_probs=100.5
Q ss_pred HHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhc
Q 048737 35 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNN 114 (274)
Q Consensus 35 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (274)
-.......|++.+|...|....+.. +-+...-..+..+|...|+.+.|..++..+.... -.........-+..+.+.
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~--~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA--QDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc--hhhHHHHHHHHHHHHHHH
Confidence 4456677888888888888887753 2335566677888888888888888888876543 122222233445566666
Q ss_pred CChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCChHHHHH
Q 048737 115 NDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEW-QPTPLNCATAITMLLDADEPEFAIE 192 (274)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 192 (274)
....+...+-.+.-.. | |...-..+...+...|+.+.|.+.+-.+.+... .-|...-..|+..+.-.|.-+.+.-
T Consensus 217 a~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 217 AATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred hcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence 6666655555555542 4 566667777888888888888877776665422 3455667778888777774444333
Q ss_pred HH
Q 048737 193 IW 194 (274)
Q Consensus 193 ~~ 194 (274)
.+
T Consensus 294 ~~ 295 (304)
T COG3118 294 AY 295 (304)
T ss_pred HH
Confidence 33
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.11 E-value=0.0036 Score=38.22 Aligned_cols=64 Identities=11% Similarity=0.251 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHhcCCcc---Ccc-HHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048737 65 KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNL---MPN-LIMYNAVVGLLCNNNDVDNVFRFFDQMV 128 (274)
Q Consensus 65 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (274)
.+++.+...|...|++++|...|++..+..... .|+ ..+++.+..+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666666777777777777776665321001 122 4456666666666677777666666654
No 217
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.11 E-value=0.047 Score=46.93 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=35.1
Q ss_pred cchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhCCChh
Q 048737 6 GNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT----LKFFSNALDILVKLNDST 81 (274)
Q Consensus 6 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 81 (274)
|++++|+++|-.+.++ |. -|..+.+.|+|-.+.++++. .|-..| ...++.+...++....++
T Consensus 748 g~feeaek~yld~drr------DL-----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRR------DL-----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred cchhHhhhhhhccchh------hh-----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666655544 32 34455555666555555432 111111 235555555565555566
Q ss_pred hHHHHHH
Q 048737 82 HTVQLWD 88 (274)
Q Consensus 82 ~a~~~~~ 88 (274)
+|.+.|.
T Consensus 814 ~A~~yY~ 820 (1189)
T KOG2041|consen 814 EAAKYYS 820 (1189)
T ss_pred HHHHHHH
Confidence 6555554
No 218
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.014 Score=46.66 Aligned_cols=123 Identities=14% Similarity=0.135 Sum_probs=62.3
Q ss_pred cccccchHHHHHHHHHHHhccC----CCCc--------hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHH
Q 048737 2 WEKEGNVVEANKTFGEMVERFE----WNPE--------HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 69 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~----~~p~--------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 69 (274)
|.+.|++..|..-|++...-.. ..+. -..+++.+..++.+.+.+.+|+...++.+..+ ++|...+-.
T Consensus 218 ~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyR 296 (397)
T KOG0543|consen 218 LFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYR 296 (397)
T ss_pred HHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHH
Confidence 5677888888888777543211 1110 12244455555566666666666666555543 444555555
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChh-hHHHHHHHHH
Q 048737 70 ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVD-NVFRFFDQMV 128 (274)
Q Consensus 70 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~ 128 (274)
-..++...|+++.|+..|+++.+.. |.|-.+-+.|+.+-.+..... +..++|..|.
T Consensus 297 rG~A~l~~~e~~~A~~df~ka~k~~---P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 297 RGQALLALGEYDLARDDFQKALKLE---PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555556666666666666665543 233333333444333333222 2244455443
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.06 E-value=0.046 Score=44.78 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCcc-H---HhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 63 TLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPN-L---IMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 63 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
+...++.+..+|...|++++|...|++.++.. |+ . .+|..+..+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56788999999999999999999999999865 54 3 45999999999999999999999998874
No 220
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.00 E-value=0.13 Score=41.44 Aligned_cols=165 Identities=11% Similarity=0.018 Sum_probs=106.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHh---CCChhhHHHHHHHHHhcCCccCccHHhHHH
Q 048737 33 ETFLITLIRGKQVDEALKFLRVMKGEN---CFPTLKFFSNALDILVK---LNDSTHTVQLWDIMVGIGFNLMPNLIMYNA 106 (274)
Q Consensus 33 ~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (274)
..++-.|-...+++..+++++.+.... +.-.+..--...-++.+ .|+.++|++++..+.... -.++..+|..
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~--~~~~~d~~gL 222 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD--ENPDPDTLGL 222 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc--CCCChHHHHH
Confidence 345557899999999999999998742 11122222233344556 899999999999966555 4788889988
Q ss_pred HHHHHHhc---------CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH----hHHHHHH----HHHHhCCC--
Q 048737 107 VVGLLCNN---------NDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKV----HEVENFF----HEMIKNEW-- 167 (274)
Q Consensus 107 l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~----~~~~~~~~-- 167 (274)
+...|-.. ...++|...|.+.-+. .||..+=-.+...+...|.. .+..++- ..+.+.|.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 88877542 2367788888876653 35543322222233333321 1222322 12223332
Q ss_pred -CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048737 168 -QPTPLNCATAITMLLDADEPEFAIEIWNYILENG 201 (274)
Q Consensus 168 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (274)
..+--.+.+++.++.-.|+.++|.+..++|.+..
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2344466899999999999999999999999864
No 221
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.96 E-value=0.042 Score=45.67 Aligned_cols=56 Identities=0% Similarity=-0.025 Sum_probs=24.3
Q ss_pred cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 100 NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
+...|..|.+...+.|+.+-|++.|++..+ |..|+-.|.-.|+.++..++.+....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 334455555555555555555554444321 33333344444444444444444333
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.93 E-value=0.15 Score=40.95 Aligned_cols=213 Identities=12% Similarity=0.044 Sum_probs=103.8
Q ss_pred ccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHh--HHHHHHHHH---hcC
Q 048737 41 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIM--YNAVVGLLC---NNN 115 (274)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~---~~~ 115 (274)
+.|..+.|..+-++.-..- +--.......+...+..|+++.|+++.+.-..... +.++..- --.|+.+-. -..
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-ie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV-IEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHHHhcC
Confidence 3344444444444443321 11233445555566666666666666655543321 2222211 111111111 112
Q ss_pred ChhhHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 048737 116 DVDNVFRFFDQMVFHGAFPDS-LTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIW 194 (274)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 194 (274)
+...|...-.+..+ ..||. ..-..-..++.+.|+..++-.+++.+-+.. |.+..+. +..+.+.|+. +.+-+
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gdt--a~dRl 315 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGDT--ALDRL 315 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCCc--HHHHH
Confidence 33444444333333 35553 233444567888888888888888887754 4433332 2223344443 33333
Q ss_pred HHHHH-CCCCcc-HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhc-Chh--HHHHHHHH
Q 048737 195 NYILE-NGILPL-EASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNE-SRS--MRDRFDSL 265 (274)
Q Consensus 195 ~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g~~--a~~~~~~~ 265 (274)
++..+ ..++|| ..+-..+..+-...|++..|..--+..... .|....|..|.+.-.-. |+. ++..+.+.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 33332 123333 345555666677777777776655554443 56666666666654433 555 44444443
No 223
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.91 E-value=0.11 Score=39.14 Aligned_cols=64 Identities=9% Similarity=0.041 Sum_probs=48.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcC
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKGEN--CFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIG 94 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 94 (274)
.+..=+..-.+.|++++|.+.|+.+..+- -+-...+...++.++.+.++++.|....++..+.-
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 34445556678899999999999998642 12235566777888889999999999999998864
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.89 E-value=0.13 Score=42.06 Aligned_cols=129 Identities=12% Similarity=0.131 Sum_probs=62.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHH
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKGEN-CFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVG 109 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (274)
+|..+++...+..-.+.|..+|-+..+.| +.++...+++.+..++ .|+..-|.++|+.-...- +.+..--+..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYLL 474 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHHH
Confidence 34444555555555555555665555555 3445555555555442 355555555555444321 222222334445
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 110 LLCNNNDVDNVFRFFDQMVFHGAFPD--SLTYNMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
.+.+.++-..|..+|+....+ +..+ ...|..+|.--..-|+...+..+=++|.+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 555555555555555533322 1112 34455555555555555555555555544
No 225
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.076 Score=41.67 Aligned_cols=153 Identities=11% Similarity=-0.048 Sum_probs=101.8
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhCCChh
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE---NCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
.|++.+|-..++++.+. .|.|..+++-.=.+|.-.|+.+.-...+++.... +++.....-..+.-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d---~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD---YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh---CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 56777788888888777 7778888887778888888888888888777653 22222222233334455778888
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHhHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP---DSLTYNMIFECLIKNKKVHEVENF 158 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~ 158 (274)
+|++.-++..+.+ +.|...-.++...+--.++..++.++..+-...--.. -..-|--..-.+...+.++.|+.+
T Consensus 193 dAEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 8888888888776 6677777777888888888888888877654321100 011122222334555788888888
Q ss_pred HHHHH
Q 048737 159 FHEMI 163 (274)
Q Consensus 159 ~~~~~ 163 (274)
|+.-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 87643
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.69 E-value=0.031 Score=42.40 Aligned_cols=99 Identities=12% Similarity=-0.009 Sum_probs=75.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHH
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKGEN--CFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVV 108 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 108 (274)
.|+.-+ .+.+.|++..|...|...++.. -.-.+..+-.|..++...|+++.|..+|..+.+.-...+--+..+--|.
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566544 5566777999999999888753 1112345566899999999999999999999886532233457788888
Q ss_pred HHHHhcCChhhHHHHHHHHHhc
Q 048737 109 GLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8899999999999999999886
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.62 E-value=0.058 Score=41.00 Aligned_cols=101 Identities=18% Similarity=0.128 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CC-ChhhHHH
Q 048737 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGA-FP-DSLTYNM 141 (274)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~ 141 (274)
...|+.-+..+ +.|++..|...|...++...+-.-....+--|..++...|++++|..+|..+.+.-. .| -+.++--
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 44677766655 778899999999999988633333455677789999999999999999999887521 11 2467788
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhC
Q 048737 142 IFECLIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~~ 165 (274)
|..+..+.|+.++|..+|++..+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888899999999999999999875
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.50 E-value=0.37 Score=39.62 Aligned_cols=145 Identities=10% Similarity=0.147 Sum_probs=107.5
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchH-HHHH
Q 048737 101 LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHG-AFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNC-ATAI 178 (274)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 178 (274)
..+|..+++.-.+..-.+.|..+|-+..+.| +.+++..+++++..++. |++.-|.++|+.-... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3567788888888888999999999999988 67788999999987754 7788899999876543 3555444 5667
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcc--HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 048737 179 TMLLDADEPEFAIEIWNYILENGILPL--EASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAF 251 (274)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 251 (274)
..+...++-..|..+|+....+ +..+ ...|..+|..-...|+...+..+=+.|.+. .|...+......-|
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 7778889999999999855442 1111 368999999889999998888887777664 44444444444333
No 229
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.46 E-value=0.33 Score=38.64 Aligned_cols=109 Identities=14% Similarity=0.209 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048737 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 145 (274)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (274)
+.+..+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+... +-++.-|-..+.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk------v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK------VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 45556777788899888888866662 58899999999999999999987775432 2356889999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048737 146 LIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNY 196 (274)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (274)
|...|+..+|..++.++ .+..-+..|.+.|++.+|.+.-.+
T Consensus 247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999988772 236678888999999998776433
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.17 Score=39.88 Aligned_cols=155 Identities=13% Similarity=0.006 Sum_probs=90.9
Q ss_pred ccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhc-CCccCccHHhHHHHHHHHHhcCChhh
Q 048737 41 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGI-GFNLMPNLIMYNAVVGLLCNNNDVDN 119 (274)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (274)
..|+..+|-..++++.+. .|.|...+...-.+|...|+.+.....++++... +.++|....+-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 345555665666666653 4556666666667777778777777777777654 21122233334444555667788888
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC---CCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048737 120 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN---EWQPTPLNCATAITMLLDADEPEFAIEIWNY 196 (274)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (274)
|++.-++..+.+ +.|.-.-......+...|+.+++.++..+-... +.-.-.+.|=...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 888877776643 235556666777777778888887776543321 0000011122223334555778888887765
Q ss_pred H
Q 048737 197 I 197 (274)
Q Consensus 197 ~ 197 (274)
-
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
No 231
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.40 E-value=0.0037 Score=31.26 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=26.0
Q ss_pred HHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHH
Q 048737 15 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 49 (274)
Q Consensus 15 ~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~ 49 (274)
|++..+. .|+++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~---~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL---NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH---CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 8989999999999999999999886
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.12 Score=41.59 Aligned_cols=125 Identities=9% Similarity=0.043 Sum_probs=69.8
Q ss_pred HHHHhCCChhhHHHHHHHHHhcC---CccC---------ccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH
Q 048737 72 DILVKLNDSTHTVQLWDIMVGIG---FNLM---------PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTY 139 (274)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~---~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (274)
+.+.+.|++..|..-|++++..= ...+ .-..+++.+.-+|.+.+++..|++.-.+.+..+ ++|+...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 56778888888888887765421 0011 123345666666666666766666666666653 3456666
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHH-HHHHHHHhcCCh-HHHHHHHHHHHH
Q 048737 140 NMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCA-TAITMLLDADEP-EFAIEIWNYILE 199 (274)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~-~~a~~~~~~~~~ 199 (274)
-.-..+|...|+++.|...|.++++. .|+..... .|+.+-.+.... +...++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666666777777777666663 34443333 333333333322 223455555553
No 233
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.38 E-value=0.41 Score=39.85 Aligned_cols=61 Identities=7% Similarity=0.064 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 104 YNAVVGLLCNNNDVDNVFRFFDQMVFHGAF-PDSLTYNMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
-..+..+..+.|+.++|++.|.+|.+.... -+......|+.++...+.+.++..++.+.-+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 344556666778888888888887654221 1234566777888888888888888877644
No 234
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.38 E-value=0.14 Score=41.38 Aligned_cols=265 Identities=12% Similarity=-0.007 Sum_probs=148.4
Q ss_pred cccccchHHHHHHHHHHHhccCCCCc--hHhHHHHHHHHHhccCcHHHHHHHHHH--HhcC--C-CCCCHHHHHHHHHHH
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRV--MKGE--N-CFPTLKFFSNALDIL 74 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~--~~~~--~-~~~~~~~~~~l~~~~ 74 (274)
+++.|+...-..+|+...+. |..-- -...|..|.++|.-.+++++|+++-.. ...+ | .......-..|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qv-GTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQV-GTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHh-cchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 46788999999999988774 53210 123467777778888888888876431 1110 1 001111222334444
Q ss_pred HhCCChhhHHHHHH----HHHhcCCccCccHHhHHHHHHHHHhcCC--------------------hhhHHHHHHHH---
Q 048737 75 VKLNDSTHTVQLWD----IMVGIGFNLMPNLIMYNAVVGLLCNNND--------------------VDNVFRFFDQM--- 127 (274)
Q Consensus 75 ~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~--- 127 (274)
--.|.+++|...-. ...+.|-. ......+..+...|...|+ ++.|.++|..=
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDr-v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDR-VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHH-HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 44555665543322 22222210 1123445556666655443 23344444331
Q ss_pred -HhcCCC-CChhhHHHHHHHHHhcCCHhHHHHHHHHHH----hCCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHH-
Q 048737 128 -VFHGAF-PDSLTYNMIFECLIKNKKVHEVENFFHEMI----KNEWQ-PTPLNCATAITMLLDADEPEFAIEIWNYILE- 199 (274)
Q Consensus 128 -~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 199 (274)
.+.|-. .-...|..|...|.-.|+++.|+...+.-+ +-|-. .....+..+.+++.-.|+++.|.+.|+.-..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 122211 112456667777777888998887665432 22322 2235677888999999999999988876543
Q ss_pred ---CCC-CccHHHHHHHHHHHHhcCCcchHHHHHHHHHh----C-CCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHH
Q 048737 200 ---NGI-LPLEASANVLLVGLRNLGRLSDVRRFAEEMLN----R-RILIYDVTMQKLKKAFYNESRS--MRDRFDSLERR 268 (274)
Q Consensus 200 ---~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~-~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 268 (274)
.|- .....+.-+|...|.-..++++|++.+.+=.. . ...-....+.+|-.++...|.. |....+..++.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 221 23345556677778777888888887665322 1 1122456788888888887765 55555444443
No 235
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.35 E-value=0.036 Score=42.32 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=63.8
Q ss_pred hHhHHHHHHHHHhcc-----CcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC----------------ChhhHHHH
Q 048737 28 HVLAYETFLITLIRG-----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN----------------DSTHTVQL 86 (274)
Q Consensus 28 ~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~~ 86 (274)
|-.+|-+.+..+... +.++-....++.|.+.|+.-|..+|..|++.+-+.. +-+-+.++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 666787777777544 567777777888999999999999999988764432 22346677
Q ss_pred HHHHHhcCCccCccHHhHHHHHHHHHhcCC
Q 048737 87 WDIMVGIGFNLMPNLIMYNAVVGLLCNNND 116 (274)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 116 (274)
+++|...| +.||..+-..|++++.+.+-
T Consensus 146 LeqME~hG--VmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 146 LEQMEWHG--VMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHcC--CCCchHHHHHHHHHhccccc
Confidence 77777777 77777777777777776654
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.35 E-value=0.12 Score=43.51 Aligned_cols=131 Identities=12% Similarity=0.154 Sum_probs=80.0
Q ss_pred HHHHHHHHHhc----cCcHHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHhCCChhhHHHHHHHHHhcCCc-cCccHHhH
Q 048737 31 AYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNA-LDILVKLNDSTHTVQLWDIMVGIGFN-LMPNLIMY 104 (274)
Q Consensus 31 ~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 104 (274)
.|+..+..++. ....+.|.+++..+.++ -|+...|... .+.+...|+++.|.+.|+........ -+.....+
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 44444444333 45677888888888774 4665555433 35566778888888888876542100 12234455
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCH-------hHHHHHHHHHHh
Q 048737 105 NAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC-LIKNKKV-------HEVENFFHEMIK 164 (274)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~-------~~a~~~~~~~~~ 164 (274)
--+.-.+.-.++|++|...|..+.+..- =+..+|.-+..+ +...++. ++|.++|.+...
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 5666777778888888888888887532 234444433333 3456666 788888877643
No 237
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.34 E-value=0.37 Score=37.94 Aligned_cols=131 Identities=11% Similarity=0.204 Sum_probs=85.1
Q ss_pred hhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHh--cC----ChhhHHHHHHHHHhcCC---CCChhhHHHHHHHHHhcC
Q 048737 80 STHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCN--NN----DVDNVFRFFDQMVFHGA---FPDSLTYNMIFECLIKNK 150 (274)
Q Consensus 80 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~ 150 (274)
++....+++.+.+.| +..+..+|-+..-.... .. ...+|.++|+.|.+... .++...+..++.. ...
T Consensus 78 ~~~~~~~y~~L~~~g--Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~ 153 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAG--FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSE 153 (297)
T ss_pred HHHHHHHHHHHHHhc--cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccc
Confidence 456678899999999 67776666653333333 22 35678999999998753 3455666666654 333
Q ss_pred C----HhHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 048737 151 K----VHEVENFFHEMIKNEWQPTPL--NCATAITMLLDADE--PEFAIEIWNYILENGILPLEASANVLLV 214 (274)
Q Consensus 151 ~----~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 214 (274)
+ .+.++.+|+.+.+.|...+.. ....++..+..... ..++.++++.+.+.|+++....|..+.-
T Consensus 154 ~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 154 DVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3 356788888888877755433 33333333322222 4478889999999999888777766543
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.34 E-value=0.086 Score=36.12 Aligned_cols=62 Identities=11% Similarity=0.046 Sum_probs=41.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHhCCChhhHHHHHHHHHhcC
Q 048737 32 YETFLITLIRGKQVDEALKFLRVMKGENCFP---TLKFFSNALDILVKLNDSTHTVQLWDIMVGIG 94 (274)
Q Consensus 32 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 94 (274)
+..-.....+.|++++|.+.|+.+..+ .+. ....-..|+.++.+.++++.|...+++.++..
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 334555666777788888888777764 222 23455667777778888888888888877765
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.33 E-value=0.2 Score=41.86 Aligned_cols=158 Identities=12% Similarity=0.134 Sum_probs=104.4
Q ss_pred HHHHhccCcHHHHHHHHH--HHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHh
Q 048737 36 LITLIRGKQVDEALKFLR--VMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCN 113 (274)
Q Consensus 36 i~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (274)
.....-.++++++.++.. ++.. .+ +....+.++..+.+.|-.+.|+++-.. |+ .-.....+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~-----~rFeLAl~ 330 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD-----HRFELALQ 330 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH-----HHHHHHHH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH-----HHhHHHHh
Confidence 344566788888777775 2221 12 255678888888899999888776432 21 22445667
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 048737 114 NNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEI 193 (274)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 193 (274)
.|+.+.|.++.++. ++...|..|.......|+++-|++.|.+.. -|..|+-.|.-.|+.+.-.++
T Consensus 331 lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 331 LGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp CT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred cCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHH
Confidence 89999998876554 377899999999999999999999998754 356777888889999888888
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHH
Q 048737 194 WNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEE 231 (274)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 231 (274)
.+.....|- ++....++...|+.++..+++.+
T Consensus 396 ~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 396 AKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 877777662 44455556667888888877654
No 240
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.31 E-value=0.23 Score=35.22 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=23.2
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 113 NNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
..|.+++.....+.+...+-+.....-..|.-+-.+.|++.+|.+.|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3455555555544444332222222233343444455555555555555544
No 241
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.29 E-value=0.4 Score=37.75 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh--C----CChhhHHHHHHHHHhcCCc-cCccHHhHHHHHHHHHhcCC-
Q 048737 45 VDEALKFLRVMKGENCFPTLKFFSNALDILVK--L----NDSTHTVQLWDIMVGIGFN-LMPNLIMYNAVVGLLCNNND- 116 (274)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~- 116 (274)
+++.+.+++.|.+.|++-+..+|-+..-.... . .....|..+|+.|++..+- ..++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788999999988887776654333332 2 2356789999999986411 13455666666554 3333
Q ss_pred ---hhhHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCC--HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 048737 117 ---VDNVFRFFDQMVFHGAFPDS--LTYNMIFECLIKNKK--VHEVENFFHEMIKNEWQPTPLNCATAITMLLDAD 185 (274)
Q Consensus 117 ---~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (274)
.+.++.+|+.+.+.|+..+- ...+.++..+....+ ...+.++++.+.+.|+++....|..+.-...-.+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~ 231 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLED 231 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCC
Confidence 36678888889888876542 334444443333322 3478899999999999988888776655443333
No 242
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.26 E-value=0.21 Score=34.36 Aligned_cols=125 Identities=12% Similarity=0.092 Sum_probs=64.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 048737 105 NAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDA 184 (274)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (274)
..++..+...+.+.....+++.+...+. .+...++.++..|++.+ ..+...++.. .++......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3445555555666666666666665542 45556666666666543 2333333332 12334445566666666
Q ss_pred CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc-CCcchHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 048737 185 DEPEFAIEIWNYILENGILPLEASANVLLVGLRNL-GRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFY 252 (274)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 252 (274)
+-++.+..++.++.. +...+..+... ++++.|.+++.+ .-+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 666666666655421 11122223333 566666666554 114445555555544
No 243
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.51 Score=38.28 Aligned_cols=155 Identities=11% Similarity=0.033 Sum_probs=92.0
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHH-------------
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA------------- 70 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------- 70 (274)
-.|+.++|...--.+.+. .+.+......-..++--.++.+.|+..|++.+..+ |+...-...
T Consensus 181 ~~~~~~~a~~ea~~ilkl---d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKL---DATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hcccchhHHHHHHHHHhc---ccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhh
Confidence 346666666666555443 44343333333334445577778888887776643 543322211
Q ss_pred HHHHHhCCChhhHHHHHHHHHhcC-CccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHh
Q 048737 71 LDILVKLNDSTHTVQLWDIMVGIG-FNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD-SLTYNMIFECLIK 148 (274)
Q Consensus 71 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 148 (274)
.+-..+.|.+..|.+.|.+.+... .+..|+...|........+.|+.++|+.--+..... .|. ...|..-..++.-
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHH
Confidence 233457788888888888887644 113445556666777777888888888877777653 211 2233333445556
Q ss_pred cCCHhHHHHHHHHHHhC
Q 048737 149 NKKVHEVENFFHEMIKN 165 (274)
Q Consensus 149 ~~~~~~a~~~~~~~~~~ 165 (274)
.++|++|.+-+++..+.
T Consensus 334 le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 67788888877777654
No 244
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.19 E-value=0.29 Score=39.02 Aligned_cols=228 Identities=11% Similarity=-0.003 Sum_probs=137.0
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhc--CCCCC---CHHHHHHHHHHHHhCC
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG--ENCFP---TLKFFSNALDILVKLN 78 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~---~~~~~~~l~~~~~~~~ 78 (274)
.+.+.++|+..|.+-..+..-.-+-...|..+..+.++.|.+++++..--.-.+ ..... --..|..+-+++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677787777766554111111233566677788888888887754321111 00111 1234555556666666
Q ss_pred ChhhHHHHHHHHHhcCCccCc---cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcC
Q 048737 79 DSTHTVQLWDIMVGIGFNLMP---NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHG-----AFPDSLTYNMIFECLIKNK 150 (274)
Q Consensus 79 ~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~ 150 (274)
++.+++.+-..-..... ..| ......++..++...+.++++++.|+...+-. ......++..+...|.+..
T Consensus 98 ~f~kt~~y~k~~l~lpg-t~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPG-TRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HhhhHHHHHHHHhcCCC-CCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 66666666555443210 111 12344557778888889999999998875431 1122467888999999999
Q ss_pred CHhHHHHHHHHHHhC----CCCCCcchHH-----HHHHHHHhcCChHHHHHHHHHHHH----CCCCc-cHHHHHHHHHHH
Q 048737 151 KVHEVENFFHEMIKN----EWQPTPLNCA-----TAITMLLDADEPEFAIEIWNYILE----NGILP-LEASANVLLVGL 216 (274)
Q Consensus 151 ~~~~a~~~~~~~~~~----~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~ 216 (274)
|+++|.-+..+..+. ++.--..-|. .+.-++-..|....|.+..++..+ .|-+| .......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 999998887766432 2211111222 334456677888888888777654 34332 234455677888
Q ss_pred HhcCCcchHHHHHHHH
Q 048737 217 RNLGRLSDVRRFAEEM 232 (274)
Q Consensus 217 ~~~g~~~~a~~~~~~m 232 (274)
...|+.|.|+.-|+..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 9999999988877764
No 245
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.16 E-value=0.0059 Score=32.59 Aligned_cols=40 Identities=20% Similarity=0.087 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 048737 30 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 70 (274)
Q Consensus 30 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 70 (274)
.+|..+...|.+.|++++|.++|++..+.. +-|...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 367778888888888888888888888753 3344444443
No 246
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.11 E-value=0.57 Score=37.83 Aligned_cols=236 Identities=10% Similarity=-0.006 Sum_probs=142.7
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHH--HHHhccCcHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhCCCh
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFL--ITLIRGKQVDEALKFLRVMKGENCFPTLK--FFSNALDILVKLNDS 80 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~ 80 (274)
.|+-..|.++-.+-... +.. |....-.|+ ++-.-.|+++.|.+-|+-|... |... -+..|.-.-.+.|+.
T Consensus 97 AGda~lARkmt~~~~~l--lss-DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL--LSS-DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh--hhc-cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccH
Confidence 46667777666554321 111 333333333 2334569999999999999852 2221 223334444577888
Q ss_pred hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCChhh--HHHHHHHHH---hcCCHhH
Q 048737 81 THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHG-AFPDSLT--YNMIFECLI---KNKKVHE 154 (274)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~li~~~~---~~~~~~~ 154 (274)
+.|.++-+..-... +.-...+...+...+..|+|+.|+++++.-.... +.++..- -..|+.+-. -..+...
T Consensus 171 eaAr~yAe~Aa~~A---p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 171 EAARHYAERAAEKA---PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred HHHHHHHHHHHhhc---cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 88988888887764 4446788899999999999999999998765543 4444321 122332211 1234555
Q ss_pred HHHHHHHHHhCCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 048737 155 VENFFHEMIKNEWQPTPL-NCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEML 233 (274)
Q Consensus 155 a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 233 (274)
|...-.+..+ +.||-. .-..-..++.+.|+..++-.+++.+=+....|+ .+. .|.+..--|.+..-++...
T Consensus 248 Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~----lY~~ar~gdta~dRlkRa~ 319 (531)
T COG3898 248 ARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL----LYVRARSGDTALDRLKRAK 319 (531)
T ss_pred HHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH----HHHHhcCCCcHHHHHHHHH
Confidence 6555544443 566644 333456788999999999999999888654444 433 3433444444554444443
Q ss_pred hC-CCcc-CHHHHHHHHHHHHhcChh
Q 048737 234 NR-RILI-YDVTMQKLKKAFYNESRS 257 (274)
Q Consensus 234 ~~-~~~~-~~~~~~~l~~~~~~~g~~ 257 (274)
+. .++| +..+...+..+-...|++
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccch
Confidence 21 1233 445666677777778877
No 247
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.11 E-value=0.11 Score=40.18 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=58.6
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCCCCcchHH
Q 048737 101 LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK-----NEWQPTPLNCA 175 (274)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 175 (274)
..++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4567777788888888888888888877764 34777888888888888888888888877654 47777777666
Q ss_pred HHHHH
Q 048737 176 TAITM 180 (274)
Q Consensus 176 ~l~~~ 180 (274)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66555
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.09 E-value=0.27 Score=33.88 Aligned_cols=44 Identities=9% Similarity=0.150 Sum_probs=23.8
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 048737 33 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 77 (274)
Q Consensus 33 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (274)
..++..+.+.+.+..+..+++.+...+ +.++...+.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 345555555555666666666555554 24455555555555543
No 249
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.08 E-value=0.68 Score=39.93 Aligned_cols=119 Identities=9% Similarity=0.029 Sum_probs=72.4
Q ss_pred HHHHHHhcCChhhHHHHHHH------HHhcCC---CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHH
Q 048737 107 VVGLLCNNNDVDNVFRFFDQ------MVFHGA---FPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATA 177 (274)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 177 (274)
....+...|+.++|..+.-+ +.+-+- ..+..+...+..-+.+...+.-|-++|.+|-+. ..+
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksi 779 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSL 779 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHH
Confidence 34455566777666655321 111111 123344555555555666677777777776432 356
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCccH-----------HHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 048737 178 ITMLLDADEPEFAIEIWNYILENGILPLE-----------ASANVLLVGLRNLGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 236 (274)
++.....++|++|..+-++..+. .|++ .-|...-.+|-+.|+-.+|..+++++....
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 77788889999998887765542 2332 224444567888899999999988886543
No 250
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.05 E-value=0.022 Score=30.33 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=13.3
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhc
Q 048737 67 FSNALDILVKLNDSTHTVQLWDIMVGI 93 (274)
Q Consensus 67 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 93 (274)
+..+...|...|++++|+++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444455555555555555555544
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.01 E-value=0.41 Score=35.33 Aligned_cols=201 Identities=14% Similarity=0.061 Sum_probs=94.2
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHH
Q 048737 30 LAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVV 108 (274)
Q Consensus 30 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 108 (274)
..+......+...+.+..+...+...... ........+......+...+++..+...+....... ..+ ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~ 136 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD--PDP-DLAEALLA 136 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC--CCc-chHHHHHH
Confidence 34455555555556666665555555431 122334444445555555555666666666555533 111 11222222
Q ss_pred H-HHHhcCChhhHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhc
Q 048737 109 G-LLCNNNDVDNVFRFFDQMVFHGA--FPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQP-TPLNCATAITMLLDA 184 (274)
Q Consensus 109 ~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 184 (274)
. .+...|+++.|...+.+...... ......+......+...++.+.+...+....... .. ....+..+...+...
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHc
Confidence 2 45556666666666665533211 0122223333333445555666666666555432 11 234455555555555
Q ss_pred CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 185 DEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
++++.+...+......... ....+..+...+...+..+.+...+......
T Consensus 216 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5566666665555543211 1222333333333444555555555555443
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.98 E-value=0.48 Score=35.88 Aligned_cols=170 Identities=12% Similarity=0.123 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHH
Q 048737 62 PTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNM 141 (274)
Q Consensus 62 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (274)
|-...|+.-+.. .+.|++++|.+.|+.+.....--+-...+.-.++-++.+.++++.|+..+++....-+.-.-..|..
T Consensus 33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 334445554444 4789999999999999976411122345566677788899999999999999887633223344555
Q ss_pred HHHHHHhc-------CCHhHHH---HHHHHHHhCCCCCCcc------hH------------HHHHHHHHhcCChHHHHHH
Q 048737 142 IFECLIKN-------KKVHEVE---NFFHEMIKNEWQPTPL------NC------------ATAITMLLDADEPEFAIEI 193 (274)
Q Consensus 142 li~~~~~~-------~~~~~a~---~~~~~~~~~~~~~~~~------~~------------~~l~~~~~~~~~~~~a~~~ 193 (274)
-|.+++.- .|...+. .-|..++.. -||+. .- ..+.+.|.+.|.+-.|..-
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR 189 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINR 189 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 55555432 2333344 444444432 24332 11 1345678888999888888
Q ss_pred HHHHHHCCCCc---cHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 194 WNYILENGILP---LEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 194 ~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
+++|.+. .+- .....-.+..+|...|-.++|.+.-.-+...
T Consensus 190 ~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 190 FEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 8888875 222 2344556677888889888888876655544
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.92 E-value=0.83 Score=38.13 Aligned_cols=220 Identities=10% Similarity=0.022 Sum_probs=122.6
Q ss_pred HHHHHHhccCcHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHH
Q 048737 34 TFLITLIRGKQVDEALKFLRVMKGENCFPTL-KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLC 112 (274)
Q Consensus 34 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (274)
.++.-..+..++..-++.-.+..+ +.||- ..|.. -+--....+.+++++|++..+.| +.. .--....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYIL--LAEEeA~Ti~Eae~l~rqAvkAg---E~~-lg~s~~~---- 240 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYIL--LAEEEASTIVEAEELLRQAVKAG---EAS-LGKSQFL---- 240 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhh--cccccccCHHHHHHHHHHHHHHH---HHh-hchhhhh----
Confidence 455666667777777777776665 33443 22222 12223456788999999988765 111 1000011
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCCcchHHHHHHHHHhcCChHHHH
Q 048737 113 NNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNE-WQPTPLNCATAITMLLDADEPEFAI 191 (274)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~ 191 (274)
+..-..++....+...|-..+=..+..++.+.|+.++|.+.+++|.+.. ...+......|+.++...+.+.++.
T Consensus 241 -----~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 241 -----QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred -----hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 1111112222222222223333457777789999999999999998643 1112346778999999999999999
Q ss_pred HHHHHHHHCCC-CccHHHHHHHHHHHHhcCCc---------------chHHHHHHHHHhCCCccCHHHHHH----H---H
Q 048737 192 EIWNYILENGI-LPLEASANVLLVGLRNLGRL---------------SDVRRFAEEMLNRRILIYDVTMQK----L---K 248 (274)
Q Consensus 192 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~---------------~~a~~~~~~m~~~~~~~~~~~~~~----l---~ 248 (274)
.++.+.-+... +.-...|+..+--+...++- ..|.+.+.+..+.+... .-|.. | -
T Consensus 316 ~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV--p~YLLe~K~LilPP 393 (539)
T PF04184_consen 316 ALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV--PKYLLEMKSLILPP 393 (539)
T ss_pred HHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC--chhhhccCCCCCCh
Confidence 99998765433 23345677765444433331 12334455554443211 11110 0 1
Q ss_pred HHHHhcChh-HHHHHHHHHHHhhhh
Q 048737 249 KAFYNESRS-MRDRFDSLERRWKTS 272 (274)
Q Consensus 249 ~~~~~~g~~-a~~~~~~~~~~~~~~ 272 (274)
..+.+.|+. |..+--.-++.||..
T Consensus 394 ehilkrGDSEAiaYAf~hL~hWk~v 418 (539)
T PF04184_consen 394 EHILKRGDSEAIAYAFFHLQHWKRV 418 (539)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 245667766 666666667777654
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=95.82 E-value=0.89 Score=37.68 Aligned_cols=130 Identities=11% Similarity=0.100 Sum_probs=71.3
Q ss_pred hHH--HHHHHHHhcc-----CcHHHHHHHHHHHhc-CCCCCC-HHHHHHHHHHHH---------hCCChhhHHHHHHHHH
Q 048737 30 LAY--ETFLITLIRG-----KQVDEALKFLRVMKG-ENCFPT-LKFFSNALDILV---------KLNDSTHTVQLWDIMV 91 (274)
Q Consensus 30 ~~~--~~li~~~~~~-----~~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 91 (274)
.+| ...+.+.... ...+.|+.+|.+... ..+.|+ ...|..+..++. ...+..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 5555444431 234567777777762 123343 333333322221 1223445566666666
Q ss_pred hcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 92 GIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD-SLTYNMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
+.+ +.|......+..+..-.++++.|...|++.... .|| ..+|....-.+.-.|+.++|.+.+++..+
T Consensus 332 eld---~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 332 DIT---TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hcC---CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 665 556666666666666666677777777776663 344 44455555555566777777777776554
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.81 Score=40.57 Aligned_cols=176 Identities=17% Similarity=0.226 Sum_probs=110.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHH----HHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHH
Q 048737 33 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL----DILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVV 108 (274)
Q Consensus 33 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 108 (274)
..-+..+.+...++-|+.+-+. .+ .+..+...+. +-+.+.|++++|...|-+-+.. +.|+. ++
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~---le~s~-----Vi 404 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF---LEPSE-----VI 404 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc---CChHH-----HH
Confidence 3455666677777777766543 22 3344444443 4456789999998888777654 34443 34
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChH
Q 048737 109 GLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPE 188 (274)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (274)
.-|....+...-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+..- .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 4556666677777888888888764 67777888999999999888777665544 2221 112455666677777777
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 048737 189 FAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEML 233 (274)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 233 (274)
+|..+-.+... +......+ +-..|++++|++.+..+.
T Consensus 481 ~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 77665444322 22333333 335677888877766553
No 256
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.81 E-value=0.091 Score=42.45 Aligned_cols=229 Identities=11% Similarity=-0.028 Sum_probs=127.3
Q ss_pred HHHhccCcHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHhCCChhhHHHHHHHH--Hhc--CCccCccHHhHHHHHH
Q 048737 37 ITLIRGKQVDEALKFLRVMKGENCF---PTLKFFSNALDILVKLNDSTHTVQLWDIM--VGI--GFNLMPNLIMYNAVVG 109 (274)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~~~~~~~~~~~~l~~ 109 (274)
.-+++.|+....+.+|+..++.|.. .=..+|..|.++|.-.+++++|.++...= ... |- -.-..-....|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd-klGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD-KLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc-hhccccccccccc
Confidence 3478999999999999999987722 12346777778888888999998875321 111 10 0001222334444
Q ss_pred HHHhcCChhhHHHHHHH----HHhcCCC-CChhhHHHHHHHHHhcCC--------------------HhHHHHHHHHHH-
Q 048737 110 LLCNNNDVDNVFRFFDQ----MVFHGAF-PDSLTYNMIFECLIKNKK--------------------VHEVENFFHEMI- 163 (274)
Q Consensus 110 ~~~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~~~- 163 (274)
.+--.|.+++|.-.-.+ ..+.|-+ .....+..+...|-..|+ ++.|.++|..=+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 55555667766543222 1222211 123344455566655443 233444443321
Q ss_pred ---hCCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHH----HCCC-CccHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 164 ---KNEW-QPTPLNCATAITMLLDADEPEFAIEIWNYIL----ENGI-LPLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 164 ---~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
+.|- -.-...|..|.+.|.-.|+++.|+...+.-. +.|- ......+..+..++.-.|+++.|.+.|+.-..
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1111 1122356666777777889999987655432 2222 12346678888899999999999998887543
Q ss_pred C----C-CccCHHHHHHHHHHHHhcChh--HHHHHHHHH
Q 048737 235 R----R-ILIYDVTMQKLKKAFYNESRS--MRDRFDSLE 266 (274)
Q Consensus 235 ~----~-~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~ 266 (274)
. | -.....+..+|-..|.-..++ |..++.+-+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 2 2 122334444555555444443 555554433
No 257
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.81 E-value=0.46 Score=34.29 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=39.1
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhCCChhhHHHHHHHHHh
Q 048737 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT--LKFFSNALDILVKLNDSTHTVQLWDIMVG 92 (274)
Q Consensus 29 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 92 (274)
...+..+...|.+.|+.+.|++.|.++.+....+. ...+-.+|......+++..+.....++..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566667777777777777777777666433332 23445556666666677666666665554
No 258
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.79 E-value=0.23 Score=35.80 Aligned_cols=62 Identities=10% Similarity=0.119 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD--SLTYNMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
.+..+...|.+.|+.+.|.+.|.++.+....|. ...+-.+|......+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455555666666666666666666655433322 23344555555566666666665555543
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.79 E-value=0.33 Score=32.71 Aligned_cols=91 Identities=10% Similarity=0.015 Sum_probs=54.8
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCCC--hhhHHHHHHHHHhc
Q 048737 73 ILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH-GAFPD--SLTYNMIFECLIKN 149 (274)
Q Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~--~~~~~~li~~~~~~ 149 (274)
+....|+++.|.+.|.+.+..- +.....||.-..++.-.|+.++|+.=+++..+. |.+.. ...|..-...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~---P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA---PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc---ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4556677777777777777653 556667777777777777777777766665543 22111 12333334445556
Q ss_pred CCHhHHHHHHHHHHhCC
Q 048737 150 KKVHEVENFFHEMIKNE 166 (274)
Q Consensus 150 ~~~~~a~~~~~~~~~~~ 166 (274)
|+-+.|..=|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 66666666666665554
No 260
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.71 E-value=0.21 Score=38.61 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048737 138 TYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYIL 198 (274)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (274)
++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 33444444445555555555555554432 3344455555555555555555555555443
No 261
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.25 E-value=0.57 Score=31.68 Aligned_cols=67 Identities=9% Similarity=0.088 Sum_probs=39.2
Q ss_pred cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 048737 100 NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEW 167 (274)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 167 (274)
+..-....++.....|+.+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3445556666677777777777777776542 345666667777777777777777777777766664
No 262
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.15 E-value=0.049 Score=27.49 Aligned_cols=23 Identities=4% Similarity=0.105 Sum_probs=12.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHH
Q 048737 32 YETFLITLIRGKQVDEALKFLRV 54 (274)
Q Consensus 32 ~~~li~~~~~~~~~~~a~~~~~~ 54 (274)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555566666666655555
No 263
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.08 E-value=0.81 Score=32.52 Aligned_cols=100 Identities=16% Similarity=0.267 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC-
Q 048737 122 RFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN- 200 (274)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 200 (274)
++++.+.+.+++|+...+..++..+.+.|++.. +..++..++-+|.......+-.+.. ....+.++--.|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh
Confidence 334444445555555566666666666555433 3333444444554444433322221 112222222222221
Q ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 048737 201 GILPLEASANVLLVGLRNLGRLSDVRRFAEEM 232 (274)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 232 (274)
+ ..+..++..+...|++-+|.++.+..
T Consensus 89 ~-----~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 89 G-----TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred h-----hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 1 13334445555556666665555543
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.08 E-value=0.059 Score=27.19 Aligned_cols=23 Identities=13% Similarity=0.401 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH
Q 048737 104 YNAVVGLLCNNNDVDNVFRFFDQ 126 (274)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~ 126 (274)
|+.|..+|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=1.2 Score=34.50 Aligned_cols=51 Identities=12% Similarity=0.063 Sum_probs=26.5
Q ss_pred HhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048737 75 VKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMV 128 (274)
Q Consensus 75 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (274)
...|++..|...|....... +-+...--.+..+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555555543 3334444455555555555555555555543
No 266
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.97 E-value=1.1 Score=33.33 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=15.8
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhc
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 57 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 57 (274)
.|+-+..||-|.-.+...|+++.|.+.|+...+
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 444444444444444444555555554444444
No 267
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.97 E-value=1.9 Score=36.29 Aligned_cols=180 Identities=9% Similarity=0.040 Sum_probs=116.8
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhH
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMY 104 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (274)
.|-|-....+++..+.++..+.-+..+..+|...| -+...|..++.+|... ..+.-..+|+++.+.. -.|++.-
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d---fnDvv~~ 135 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD---FNDVVIG 135 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc---chhHHHH
Confidence 44455567778888888888888888888888754 5677888888888777 6677888888888865 2345555
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCC------hhhHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCcchHHHH
Q 048737 105 NAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD------SLTYNMIFECLIKNKKVHEVENFFHEMIKN-EWQPTPLNCATA 177 (274)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l 177 (274)
..|..-|-+ ++.+.+..+|.+...+= -|. ...|..+... -..+.+....+..++... |...-...+.-+
T Consensus 136 ReLa~~yEk-ik~sk~a~~f~Ka~yrf-I~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 136 RELADKYEK-IKKSKAAEFFGKALYRF-IPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHHHH-hchhhHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 555555555 78888888888776552 221 1244444432 124556666666665543 333344555566
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 048737 178 ITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVG 215 (274)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 215 (274)
-.-|....++++|.+++..+.+.+- .|...-..++.-
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~ 248 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHDE-KDVWARKEIIEN 248 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHH
Confidence 6777788888888888887766542 344444444443
No 268
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.97 E-value=0.83 Score=32.09 Aligned_cols=113 Identities=17% Similarity=0.179 Sum_probs=59.8
Q ss_pred HHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHH-HHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHh
Q 048737 35 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFF-SNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCN 113 (274)
Q Consensus 35 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (274)
++..-.+.++.+++..++.-+.- +.|..... ..-...+...|++.+|..+|+.+.... |.......|+..|..
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~----~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA----PGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC----CCChHHHHHHHHHHH
Confidence 34445667788888888887765 34443222 222344567888888888888887654 333334444444333
Q ss_pred c-CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 048737 114 N-NDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVEN 157 (274)
Q Consensus 114 ~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 157 (274)
. |+.+ =...-+++.+.+..|+.. .++..+....+...|..
T Consensus 90 ~~~D~~-Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 90 ALGDPS-WRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred HcCChH-HHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 3 3332 233344455554333332 23444444444444433
No 269
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.86 E-value=2.4 Score=36.85 Aligned_cols=182 Identities=13% Similarity=0.136 Sum_probs=111.7
Q ss_pred chHHHHHHHHHHHhccCCCCchHhHHHHHHHH-----HhccCcHHHHHHHHHHHhc-------CCCCCCHHHHHHHHHHH
Q 048737 7 NVVEANKTFGEMVERFEWNPEHVLAYETFLIT-----LIRGKQVDEALKFLRVMKG-------ENCFPTLKFFSNALDIL 74 (274)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~ 74 (274)
+...|.+.++..... | +..+-..+... +....+.+.|+.+|+.+.+ .| ++.....+..+|
T Consensus 227 ~~~~a~~~~~~~a~~-g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL-G----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLY 298 (552)
T ss_pred hhhHHHHHHHHHHhh-c----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHH
Confidence 356788888877765 3 33333333332 3466889999999998876 44 333556677777
Q ss_pred HhCC-----ChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHh-cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH-
Q 048737 75 VKLN-----DSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCN-NNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI- 147 (274)
Q Consensus 75 ~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~- 147 (274)
.+.. +.+.|..+|....+.| .|+....-..+..... ..+...|.++|...-+.|.. ...-+..++....
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGL 374 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCC
Confidence 6643 5677999999999988 5555444333333333 35678999999999887742 2222222222221
Q ss_pred -hcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048737 148 -KNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI 202 (274)
Q Consensus 148 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 202 (274)
-..+...|..++.+..+.| .|...--...+..+.. +.++.+.-.+..+.+.|.
T Consensus 375 gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 2347888999999988887 3433333333444444 677777666666665553
No 270
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.85 E-value=0.83 Score=35.79 Aligned_cols=103 Identities=9% Similarity=0.105 Sum_probs=67.3
Q ss_pred cCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcch
Q 048737 97 LMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHG---AFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLN 173 (274)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 173 (274)
.+....+...++..-....++++++..+-++..+- ..|+. +-..+++-| -.-++++++.++..=+.-|+-||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 34455566666666666777888888877776541 11121 112223322 33456777777777777788888888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048737 174 CATAITMLLDADEPEFAIEIWNYILENG 201 (274)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (274)
+..+|+.+.+.+++..|..+.-.|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888887777766543
No 271
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.83 E-value=0.036 Score=27.62 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=13.9
Q ss_pred CccHHhHHHHHHHHHhcCChhhHH
Q 048737 98 MPNLIMYNAVVGLLCNNNDVDNVF 121 (274)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~ 121 (274)
|-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445555666666666666665554
No 272
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.79 E-value=0.98 Score=32.09 Aligned_cols=135 Identities=14% Similarity=0.238 Sum_probs=70.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048737 49 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMV 128 (274)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (274)
.++++.+.+.+++|++..+..++..+.+.|++..-.++ +..+ +-+|.......+-.+. +....+.++--+|.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~--Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYH--VIPDSKPLACQLLSLG--NQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----Hhhc--ccCCcHHHHHHHHHhH--ccChHHHHHHHHHH
Confidence 34555555667777777777777777777765444333 3333 3344333332222222 22333444444444
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048737 129 FHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 129 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (274)
++ =...+..++..+...|++-+|.++.+.... .+......++.+..+.+|...--.+++...+
T Consensus 86 kR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 86 KR----LGTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 111455566677777777777777765422 1222334566666666666555555555444
No 273
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=1.3 Score=33.46 Aligned_cols=195 Identities=14% Similarity=0.116 Sum_probs=95.9
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHH------HHHHHHHHHHhCCChhhHHHHHHHHH----hcCCccC
Q 048737 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK------FFSNALDILVKLNDSTHTVQLWDIMV----GIGFNLM 98 (274)
Q Consensus 29 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~ 98 (274)
...|..-..+|-..+++++|...+.+..+. ...+.. .|...+-..-....+.++..++++.. +.| .
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G---s 106 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG---S 106 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---C
Confidence 345677777888889999998888776631 112222 23333333334444555555555543 233 3
Q ss_pred ccHHhHHHHHHH--HHhcCChhhHHHHHHHHHhc---CC--CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC----CC
Q 048737 99 PNLIMYNAVVGL--LCNNNDVDNVFRFFDQMVFH---GA--FPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN----EW 167 (274)
Q Consensus 99 ~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~ 167 (274)
|+...-. |-++ ....-++++|+.+|++.... +- .--...+..+-..+.+...+++|-..+.+-... .-
T Consensus 107 pdtAAma-leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~ 185 (308)
T KOG1585|consen 107 PDTAAMA-LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA 185 (308)
T ss_pred cchHHHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence 3322211 1111 22334556666666554321 00 001223444455555666666555444332211 11
Q ss_pred CCCc-chHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHhcCCcchHHHHH
Q 048737 168 QPTP-LNCATAITMLLDADEPEFAIEIWNYILENG---ILPLEASANVLLVGLRNLGRLSDVRRFA 229 (274)
Q Consensus 168 ~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 229 (274)
-++. ..|...|-.+.-..++..|...++.--+.+ -.-+..+...|+.+| ..|+.+++..++
T Consensus 186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 1111 234455555666677888888877644321 123456677777766 456777666553
No 274
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=1.8 Score=38.58 Aligned_cols=143 Identities=16% Similarity=0.131 Sum_probs=93.5
Q ss_pred HHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhc
Q 048737 35 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNN 114 (274)
Q Consensus 35 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (274)
-...+.+.|++++|...|-+.+.. +.| ..++.-|.....+..-..+++.+.+.| -.+...-+.|+.+|.+.
T Consensus 374 Ygd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~g---la~~dhttlLLncYiKl 444 (933)
T KOG2114|consen 374 YGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKG---LANSDHTTLLLNCYIKL 444 (933)
T ss_pred HHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcc---cccchhHHHHHHHHHHh
Confidence 344556779999999988776643 333 335666677777778888899999988 34556667889999999
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 048737 115 NDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIW 194 (274)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 194 (274)
++.++-.++.+... .|.. ..-....+..|.+.+-.++|..+-.+... +......+ +-..+++++|.+.+
T Consensus 445 kd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi 513 (933)
T KOG2114|consen 445 KDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYI 513 (933)
T ss_pred cchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHH
Confidence 99998888777654 2221 11234556666666666666655444322 22233333 33567888888777
Q ss_pred HHH
Q 048737 195 NYI 197 (274)
Q Consensus 195 ~~~ 197 (274)
..+
T Consensus 514 ~sl 516 (933)
T KOG2114|consen 514 SSL 516 (933)
T ss_pred hcC
Confidence 654
No 275
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.72 E-value=0.85 Score=31.53 Aligned_cols=52 Identities=13% Similarity=0.251 Sum_probs=33.2
Q ss_pred HhccCcHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhCCChhhHHHHHHHHHhcC
Q 048737 39 LIRGKQVDEALKFLRVMKGENCFPT---LKFFSNALDILVKLNDSTHTVQLWDIMVGIG 94 (274)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 94 (274)
-...++++++..++.-|.- +.|+ ..++.. -.+...|++++|.++|+.+.+.+
T Consensus 20 aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRV--LRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHhcCCHHHHHHHHHHHHH--hCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence 3446777777777777764 3343 333333 34457788888888888887755
No 276
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.71 E-value=0.9 Score=31.25 Aligned_cols=77 Identities=5% Similarity=-0.049 Sum_probs=48.5
Q ss_pred HHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 048737 72 DILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148 (274)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 148 (274)
....+.|+++.|.+.|+.+...-.--+-...+--.++.+|.+.++++.|...++++.+..+.-.-.-|...+.+++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 33446788888888888887653101123445566777788888888888888888775433223455555555544
No 277
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.64 E-value=1.6 Score=33.87 Aligned_cols=137 Identities=9% Similarity=0.150 Sum_probs=93.0
Q ss_pred CChhhHHHHHHHHHh-cCCCCChhhHHHHHHHHHhcC--CHhHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChHHH
Q 048737 115 NDVDNVFRFFDQMVF-HGAFPDSLTYNMIFECLIKNK--KVHEVENFFHEMIKN-EWQPTPLNCATAITMLLDADEPEFA 190 (274)
Q Consensus 115 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a 190 (274)
....+|+.+|+.... ..+--|..+...+++...... ....-.++.+-+... +-.++..+...++..+++.+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345677777773322 224457788888888776622 223333444444433 4578888899999999999999999
Q ss_pred HHHHHHHHHC-CCCccHHHHHHHHHHHHhcCCcchHHHHHHH-----HHhCCCccCHHHHHHHHHHH
Q 048737 191 IEIWNYILEN-GILPLEASANVLLVGLRNLGRLSDVRRFAEE-----MLNRRILIYDVTMQKLKKAF 251 (274)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----m~~~~~~~~~~~~~~l~~~~ 251 (274)
.++|...... +..-|...|..++......|+..-...+..+ +.+.++..+...-..+-..+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 9999887765 6667888999999999999998766666554 23445666655544444333
No 278
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.81 Score=35.84 Aligned_cols=131 Identities=11% Similarity=0.125 Sum_probs=91.1
Q ss_pred HHHHHHhccCcHHHHHHHHHHHh----------cCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcC-CccCccHH
Q 048737 34 TFLITLIRGKQVDEALKFLRVMK----------GENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIG-FNLMPNLI 102 (274)
Q Consensus 34 ~li~~~~~~~~~~~a~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 102 (274)
.|.++|.....|+.-....-.+- ..|.+....+...++..-....+++.+...+-.+...- -...|+.
T Consensus 24 ~LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~- 102 (418)
T KOG4570|consen 24 LLSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW- 102 (418)
T ss_pred hhHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-
Confidence 37788888888875544442322 23445555666677777777788999998887776531 0012221
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNE 166 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (274)
+-.+.++.+. .-++++++.++..=..-|+-||..+++.+|..+.+.+++.+|.++.-.|....
T Consensus 103 ~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 103 TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 1122233333 35688999999999999999999999999999999999999999888776553
No 279
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.27 E-value=1.8 Score=32.80 Aligned_cols=82 Identities=5% Similarity=-0.088 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCccH-HHHHHHHHHHHhcCCcchHHHHHHHHHhC---CCccCHHHHH
Q 048737 174 CATAITMLLDADEPEFAIEIWNYILEN----GILPLE-ASANVLLVGLRNLGRLSDVRRFAEEMLNR---RILIYDVTMQ 245 (274)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~ 245 (274)
+...-+.+.+...+++|-..+.+-... .--|+. ..|-..|-.|....++..|...++.-... .-.-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 344455566666777665555433211 111221 33555566677778999999999884433 2334567788
Q ss_pred HHHHHHHhcC
Q 048737 246 KLKKAFYNES 255 (274)
Q Consensus 246 ~l~~~~~~~g 255 (274)
.|+.+|-...
T Consensus 233 nLL~ayd~gD 242 (308)
T KOG1585|consen 233 NLLTAYDEGD 242 (308)
T ss_pred HHHHHhccCC
Confidence 8888885543
No 280
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.98 E-value=1.3 Score=30.07 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=43.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 048737 172 LNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRIL 238 (274)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 238 (274)
..+...+......|.-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++-+++.+..+.|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 344555666777788888888887776533 466677777888888888888888888888888764
No 281
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.93 E-value=0.86 Score=33.30 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=60.9
Q ss_pred HhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCcc-CccHHhHHHHHHHHHhcCCh
Q 048737 39 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNL-MPNLIMYNAVVGLLCNNNDV 117 (274)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 117 (274)
+.....-+.|.+.|-.+...+.--++.....|...| ...+.+++.+++.+..+....- .+|+..+..|+..|.+.+++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344434567888888888877555555555555544 5788999999998888653223 78999999999999999999
Q ss_pred hhHH
Q 048737 118 DNVF 121 (274)
Q Consensus 118 ~~a~ 121 (274)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 282
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.86 E-value=0.69 Score=29.27 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 048737 47 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMV 91 (274)
Q Consensus 47 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 91 (274)
++.+-++.+...++.|++....+.+++|-+.+++..|.++++-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555566666666666666666666666666666555
No 283
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.83 E-value=1.4 Score=37.80 Aligned_cols=98 Identities=8% Similarity=-0.033 Sum_probs=51.5
Q ss_pred HhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhH
Q 048737 75 VKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHE 154 (274)
Q Consensus 75 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 154 (274)
.+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|.+..+ |..|+-.+...|+-+.
T Consensus 648 l~lgrl~iA~~la~e~--------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhcCcHHHHHHHHHhh--------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence 3555666555544332 2345566666666666666666666655443 3445555555565554
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 048737 155 VENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWN 195 (274)
Q Consensus 155 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (274)
...+-....+.|. .|...-+|...|+++++.+++.
T Consensus 711 l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 711 LAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHH
Confidence 4444444444441 1222334445566666666553
No 284
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.79 E-value=4.2 Score=35.40 Aligned_cols=184 Identities=11% Similarity=0.042 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHH--HH-HHhCCChhhHHHHHHHHHh-------cCCccCccHHhHHHHHHHHHhc
Q 048737 45 VDEALKFLRVMKGENCFPTLKFFSNAL--DI-LVKLNDSTHTVQLWDIMVG-------IGFNLMPNLIMYNAVVGLLCNN 114 (274)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~ 114 (274)
...|.++++.....|.. .......++ .+ +....+.+.|..+++.+.+ .| +.....-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~-----~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG-----LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc-----CCccccHHHHHHhcC
Confidence 46788888888776622 122222222 22 4466799999999999877 44 333566667777764
Q ss_pred C-----ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHH--hcCC
Q 048737 115 N-----DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK-NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLL--DADE 186 (274)
Q Consensus 115 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 186 (274)
. +.+.|..++.+.-+.|. |+....-..+.-... ..+...|.++|......|. +....+..++.... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCC
Confidence 3 66779999999888764 454443333332222 2467899999999998883 33333333332222 3347
Q ss_pred hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 048737 187 PEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRIL 238 (274)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 238 (274)
...|..++.+.-+.|. |....-...+..+.. ++++.+.-.+..+.+.|..
T Consensus 380 ~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 8889999999988883 433333333344444 7788877777777766543
No 285
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.73 E-value=0.68 Score=29.30 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMV 128 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (274)
++.+-++.+...+ +.|++.+..+.+++|.|.+|+..|.++|+-.+
T Consensus 25 e~rr~mN~l~~~D--lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYD--LVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccc--cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4445555555555 56666666666666666666666666666554
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.63 E-value=1.9 Score=30.85 Aligned_cols=138 Identities=13% Similarity=0.074 Sum_probs=69.6
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcc-hHHHH-
Q 048737 101 LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD-SLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPL-NCATA- 177 (274)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l- 177 (274)
...|..-++ ..+.+..++|+.-|..+.+.|...= +..--.+.......|+...|...|++.-...-.|-.. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 334444443 3345666777777777766543211 1111122233455667777777777765543223221 11112
Q ss_pred -HHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCcc
Q 048737 178 -ITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILI 239 (274)
Q Consensus 178 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 239 (274)
...+...|.++....-.+-+...+-+.-...-..|--+-.+.|++.+|.+.|..+.+....|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 12234566666666655555443332223334445555567777777777777776543333
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.59 E-value=0.22 Score=24.46 Aligned_cols=26 Identities=8% Similarity=0.266 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 104 YNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
|..+..+|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444433
No 288
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.43 E-value=0.82 Score=33.86 Aligned_cols=77 Identities=8% Similarity=0.058 Sum_probs=43.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHH
Q 048737 33 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGL 110 (274)
Q Consensus 33 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (274)
+..++.+.+.++..+++...++-.+.. +.|..+-..++..++-.|++++|..-++-.-....+..+...+|..++.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 334555666666777776666655542 34445555666677777777777666555554332233445556555553
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.41 E-value=3.5 Score=33.28 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=46.0
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc---cHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 170 TPLNCATAITMLLDADEPEFAIEIWNYILENGILP---LEASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
...++..+.+.+.+.|.++.|...+.++...+..+ .+...-..+..+-..|+.++|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567788888888888888888888877643111 234444556666777888888888887776
No 290
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.38 E-value=2.2 Score=31.31 Aligned_cols=78 Identities=8% Similarity=0.049 Sum_probs=59.7
Q ss_pred HhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCC
Q 048737 75 VKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH---GAFPDSLTYNMIFECLIKNKK 151 (274)
Q Consensus 75 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~ 151 (274)
.+.|+ +.|.+.|-++...+ .-.++.....|...|. ..+.+++..++.+..+. +-.+|+..+..|+..+.+.|+
T Consensus 118 sr~~d-~~A~~~fL~~E~~~--~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTP--ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hccCc-HHHHHHHHHHcCCC--CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 34344 68889998898887 4455666666665555 68899999999887653 336789999999999999999
Q ss_pred HhHHH
Q 048737 152 VHEVE 156 (274)
Q Consensus 152 ~~~a~ 156 (274)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 98874
No 291
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.36 E-value=0.76 Score=29.41 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhc
Q 048737 48 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGI 93 (274)
Q Consensus 48 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 93 (274)
..+-++.+...++.|++....+.+++|.+.+++..|.++++-++..
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4444455555555555555555556665555665555555555543
No 292
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.34 E-value=1.2 Score=31.86 Aligned_cols=109 Identities=14% Similarity=0.104 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhcc---Cc-------HHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHh
Q 048737 8 VVEANKTFGEMVERFEWNPEHVLAYETFLITLIRG---KQ-------VDEALKFLRVMKGENCFPT-LKFFSNALDILVK 76 (274)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~---~~-------~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 76 (274)
++.|.+.++.-..+ +|.|+..++.-..++... .+ +++|+.-|++.+. +.|+ ..++..+..++..
T Consensus 7 FE~ark~aea~y~~---nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAK---NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHH
Confidence 45666666665444 677777666555544333 33 3344444444444 4455 3566666666554
Q ss_pred CC-----------ChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 048737 77 LN-----------DSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHG 131 (274)
Q Consensus 77 ~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 131 (274)
.+ .+++|...|++... ..|+..+|+.-+.... +|-++..++.+.+
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~----~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVD----EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHH----H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHh----cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 32 24455555555555 3477777776666542 3455555554443
No 293
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.32 E-value=5.1 Score=34.96 Aligned_cols=211 Identities=15% Similarity=0.059 Sum_probs=113.0
Q ss_pred HHHHHhccCc--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHH-----H
Q 048737 35 FLITLIRGKQ--VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNA-----V 107 (274)
Q Consensus 35 li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----l 107 (274)
.=.+|.+-.+ +-+.+.-+++++++|-.|+... +...|+-.|.+.+|-++|.+--..+ .-...|+- +
T Consensus 604 ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en----RAlEmyTDlRMFD~ 676 (1081)
T KOG1538|consen 604 ARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN----RALEMYTDLRMFDY 676 (1081)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh----hHHHHHHHHHHHHH
Confidence 3345544433 4455556677788887787654 4455666788888888875432111 01111111 1
Q ss_pred HHHHHhcCChhhHHHHHHHHHh--cCCCCChhhHHHHHHHHHhcCCHhHHHHHHH------HHHhCCC---CCCcchHHH
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVF--HGAFPDSLTYNMIFECLIKNKKVHEVENFFH------EMIKNEW---QPTPLNCAT 176 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~------~~~~~~~---~~~~~~~~~ 176 (274)
..-|...|+.++-..+.++-.+ ..++-. .+....+...|+.++|..+.- .+.+-+. ..+..+...
T Consensus 677 aQE~~~~g~~~eKKmL~RKRA~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~ 752 (1081)
T KOG1538|consen 677 AQEFLGSGDPKEKKMLIRKRADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLL 752 (1081)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHH
Confidence 2223333333333222222110 001101 122334455666666655432 1122121 223445555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCH-----------HHHH
Q 048737 177 AITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYD-----------VTMQ 245 (274)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----------~~~~ 245 (274)
+...+.+...+.-|.++|.+|-+. ..++......+++++|+.+-+...+. .||. .-|.
T Consensus 753 ~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFe 821 (1081)
T KOG1538|consen 753 CATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFE 821 (1081)
T ss_pred HHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHH
Confidence 666666778888899999877542 24677788899999999998876653 2221 2344
Q ss_pred HHHHHHHhcChh--HHHHHHHHHH
Q 048737 246 KLKKAFYNESRS--MRDRFDSLER 267 (274)
Q Consensus 246 ~l~~~~~~~g~~--a~~~~~~~~~ 267 (274)
-.-++|.+.|+. |..+++++-.
T Consensus 822 EAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 822 EAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHhcchHHHHHHHHHhhh
Confidence 455678888877 7777766543
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.30 E-value=0.2 Score=24.63 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=14.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhc
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKG 57 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 57 (274)
+|..+...+...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555544
No 295
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.21 E-value=0.052 Score=37.58 Aligned_cols=82 Identities=11% Similarity=0.194 Sum_probs=43.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCh
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEP 187 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (274)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++. .+..-...+++.|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcchH
Confidence 445555566666666666666554444566666666666666655555555541 1112223455555555555
Q ss_pred HHHHHHHHH
Q 048737 188 EFAIEIWNY 196 (274)
Q Consensus 188 ~~a~~~~~~ 196 (274)
+.+..++.+
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555555544
No 296
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.18 E-value=0.5 Score=37.45 Aligned_cols=87 Identities=11% Similarity=0.116 Sum_probs=41.6
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|.+.|++++|++.|..-.. +.|.|++.+..-..+|.+...+..|..=.+.....+ ..-...|..-+.+--..|...
T Consensus 107 yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 4555666666666655432 255555555555666666665555554444443321 011222333333333344455
Q ss_pred hHHHHHHHHHh
Q 048737 82 HTVQLWDIMVG 92 (274)
Q Consensus 82 ~a~~~~~~~~~ 92 (274)
+|.+=++..++
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 55555555544
No 297
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.94 E-value=3.6 Score=32.17 Aligned_cols=166 Identities=15% Similarity=0.144 Sum_probs=101.6
Q ss_pred HhccCcHHHHHHHHHHHhcCCCCCCHHHHHHH-------HHHHHhCC-ChhhHHHHHHHHHhc----C--CccCcc----
Q 048737 39 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNA-------LDILVKLN-DSTHTVQLWDIMVGI----G--FNLMPN---- 100 (274)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~-~~~~a~~~~~~~~~~----~--~~~~~~---- 100 (274)
..+.|+.+.|..++.+........++.....| .....+.+ +++.|...+++..+. + ....|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999988763212222222222 22333556 888888887776543 1 002233
Q ss_pred -HHhHHHHHHHHHhcCChh---hHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHH
Q 048737 101 -LIMYNAVVGLLCNNNDVD---NVFRFFDQMVFHGAFPD-SLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCA 175 (274)
Q Consensus 101 -~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 175 (274)
..+...++.+|...+..+ +|.++++.+.... |+ ...+..-+..+.+.++.+.+.+.+.+|+..- ......+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~ 159 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHH
Confidence 346777888888877654 4566666665442 34 5566667777777899999999999999762 22344555
Q ss_pred HHHHHHHh--cCChHHHHHHHHHHHHCCCCccHH
Q 048737 176 TAITMLLD--ADEPEFAIEIWNYILENGILPLEA 207 (274)
Q Consensus 176 ~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~ 207 (274)
.++..+.. ......|...+..+....+.|...
T Consensus 160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 160 SILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 55555522 233455666676666554445543
No 298
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.90 E-value=1.6 Score=27.99 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 144 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 144 (274)
+..+-++.+...+ +.|++.+..+.+++|.|.+++..|.++|+-.+.. +.+....|..+++
T Consensus 28 e~rrglN~l~~~D--lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYD--LVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSS--B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccc--cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 4455555555555 6666666777777777777777777777666543 2222224554444
No 299
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.64 E-value=3.6 Score=34.45 Aligned_cols=117 Identities=10% Similarity=0.138 Sum_probs=72.4
Q ss_pred cchHHH-HHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHH
Q 048737 6 GNVVEA-NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTV 84 (274)
Q Consensus 6 g~~~~a-~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (274)
|++-.| .++|+-++.. .-.| ..-......+...|.++.+...+...... +.....+...+++...+.|+++.|.
T Consensus 303 gd~~aas~~~~~~lr~~-~~~p---~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 303 GDIIAASQQLFAALRNQ-QQDP---VLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred cCHHHHHHHHHHHHHhC-CCCc---hhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 444433 4455555442 3344 22233334456678888888877665542 3455667788888888888888888
Q ss_pred HHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 85 QLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
.+-.-|.... -.+..+........-..|-++++.-.|+++...
T Consensus 378 s~a~~~l~~e---ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 378 STAEMMLSNE---IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHhccc---cCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 8888777654 233444444444444556778888888887654
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.54 E-value=0.38 Score=23.42 Aligned_cols=24 Identities=4% Similarity=0.195 Sum_probs=9.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHH
Q 048737 105 NAVVGLLCNNNDVDNVFRFFDQMV 128 (274)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~ 128 (274)
..+..++.+.|++++|++.|++..
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333444444444444444444443
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.49 E-value=0.3 Score=23.83 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=14.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhc
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKG 57 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 57 (274)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555555555555555544
No 302
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.32 E-value=4.4 Score=31.59 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=82.4
Q ss_pred cCccHHhHHHHHHHHHhcCC--hhhHHHHHHHHH-hcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCcc
Q 048737 97 LMPNLIMYNAVVGLLCNNND--VDNVFRFFDQMV-FHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN-EWQPTPL 172 (274)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~ 172 (274)
+-.|..+...+++......+ ...--++.+-+. ..|-.++..+...++..++..++|.+-.++++..... +...|..
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~r 239 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPR 239 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCc
Confidence 44567777778877766222 222223333333 2245678889999999999999999999999988766 5567889
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHH-----HHHCCCCccHHHHHHHHHHH
Q 048737 173 NCATAITMLLDADEPEFAIEIWNY-----ILENGILPLEASANVLLVGL 216 (274)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 216 (274)
.|..+|+...+.|+..-...+..+ ++..++..+...-..+-..+
T Consensus 240 pW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 240 PWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred hHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999999999999998877776654 22334555554444444333
No 303
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.22 E-value=2.9 Score=30.74 Aligned_cols=87 Identities=11% Similarity=0.060 Sum_probs=43.4
Q ss_pred HHhCCChhhHHHHHHHHHhcCCccCcc-----HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 048737 74 LVKLNDSTHTVQLWDIMVGIGFNLMPN-----LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148 (274)
Q Consensus 74 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 148 (274)
+.+.|++++|..-|..++..- ++. ...|..-..++.+.+.++.|+.--.+..+.+.. .......-..+|.+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c---p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC---PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC---ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 335556666666665555542 221 223444444555556666665555555554321 12233333445555
Q ss_pred cCCHhHHHHHHHHHHh
Q 048737 149 NKKVHEVENFFHEMIK 164 (274)
Q Consensus 149 ~~~~~~a~~~~~~~~~ 164 (274)
...+++|+.=|.++.+
T Consensus 181 ~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILE 196 (271)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5566666666666555
No 304
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=92.17 E-value=2.7 Score=32.44 Aligned_cols=89 Identities=10% Similarity=0.008 Sum_probs=62.1
Q ss_pred HHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHh
Q 048737 34 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCN 113 (274)
Q Consensus 34 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (274)
.=|++++..++|.+++...-+.-+..-+..+.....-|-.|.+.+++..+.++-....+.- -..+..-|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p--~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDP--SNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCc--ccCCchhhHHHHHHHHH
Confidence 3478888999999998887666553333334555666777889999988888887777643 12234447777766655
Q ss_pred -----cCChhhHHHHH
Q 048737 114 -----NNDVDNVFRFF 124 (274)
Q Consensus 114 -----~~~~~~a~~~~ 124 (274)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 58888888887
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.12 E-value=0.36 Score=24.82 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHHh
Q 048737 30 LAYETFLITLIRGKQVDEALKFLRVMK 56 (274)
Q Consensus 30 ~~~~~li~~~~~~~~~~~a~~~~~~~~ 56 (274)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 355666666666666666666666554
No 306
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.12 E-value=6.4 Score=33.08 Aligned_cols=123 Identities=12% Similarity=0.012 Sum_probs=80.9
Q ss_pred HHhCCChhhHHH-HHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 048737 74 LVKLNDSTHTVQ-LWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKV 152 (274)
Q Consensus 74 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 152 (274)
-...|++-.|-+ ++..+.... -.|+.. ......+...|+++.+...+...... +.....+..++++..-..|++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~--~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQ--QDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCC--CCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 345566666554 444444322 234433 33344567789999999888776543 344667888899999999999
Q ss_pred hHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048737 153 HEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI 202 (274)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 202 (274)
++|...-.-|....+. ++.......-..-..|-++++...|+++...+.
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 9999999888877653 222333333333456788999999988876553
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.09 E-value=3.1 Score=29.32 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=60.7
Q ss_pred HhHHHHHHH---HHhcCChhhHHHHHHHHHhcCCCCChhhHHH-HHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHH
Q 048737 102 IMYNAVVGL---LCNNNDVDNVFRFFDQMVFHGAFPDSLTYNM-IFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATA 177 (274)
Q Consensus 102 ~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 177 (274)
.+.+.|+.. -.+.++.+++..+++.+.-. +|....... -...+...|+|.+|..+|+.+.+.. |....-..|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence 344444443 34567888888888887763 455333322 2234567788888888888876543 333333444
Q ss_pred HHHHHhc-CChHHHHHH-HHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHH
Q 048737 178 ITMLLDA-DEPEFAIEI-WNYILENGILPLEASANVLLVGLRNLGRLSDVRR 227 (274)
Q Consensus 178 ~~~~~~~-~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 227 (274)
+..|... |+. .++. -+++.+.+..|+. ..++..+....+...|..
T Consensus 84 lA~CL~~~~D~--~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 84 LALCLYALGDP--SWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHcCCh--HHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 4444332 232 2222 2334444433332 334555555555544443
No 308
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.95 E-value=4.1 Score=30.41 Aligned_cols=182 Identities=9% Similarity=-0.007 Sum_probs=95.2
Q ss_pred CcHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHH
Q 048737 43 KQVDEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVF 121 (274)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 121 (274)
|-+..|.-=|.+... +.|+ +..||-|.--+...|+++.|.+.|+...+.+ ..-+-...|.-|. +.-.|++.-|.
T Consensus 79 GL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~-~YY~gR~~LAq 153 (297)
T COG4785 79 GLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIA-LYYGGRYKLAQ 153 (297)
T ss_pred hHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhcccee-eeecCchHhhH
Confidence 444444444444443 4454 5677777777778888888888888888765 1222222333222 33357788777
Q ss_pred HHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048737 122 RFFDQMVFHGA-FPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN 200 (274)
Q Consensus 122 ~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (274)
+-+.+.-+.+. .|=...|--+.. +.-++.+|..-+.+--+ ..|..-|...|-.|. .|.+. ...+++++...
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~ 225 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFY-LGKIS-EETLMERLKAD 225 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhh
Confidence 77666655421 111223332222 33455555443322211 233333433332221 12211 12233333321
Q ss_pred CC------CccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 048737 201 GI------LPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI 237 (274)
Q Consensus 201 ~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 237 (274)
.- ..-..+|--+.+-+...|+.++|..+|+-.+..++
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 10 11136777788888999999999999998877654
No 309
>PRK09687 putative lyase; Provisional
Probab=91.81 E-value=5.2 Score=31.37 Aligned_cols=215 Identities=10% Similarity=-0.019 Sum_probs=96.8
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh----hhHHHHHHHHHhcCCccCccHHh
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS----THTVQLWDIMVGIGFNLMPNLIM 103 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~ 103 (274)
|.......+..+...|.. ++...+..+... +|+..=...+.++...|+. +.+...+..+... .++..+
T Consensus 36 d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~----D~d~~V 107 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE----DKSACV 107 (280)
T ss_pred CHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc----CCCHHH
Confidence 444555566666655543 333334444332 3444444455555555543 3455555544332 244444
Q ss_pred HHHHHHHHHhcCCh-----hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHH
Q 048737 104 YNAVVGLLCNNNDV-----DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAI 178 (274)
Q Consensus 104 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 178 (274)
-...+.++...+.. ..+...+..... .++..+=...+.++.+.++ ..+...+-.+.+ .+|...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHH
Confidence 44444444443321 123333333322 1344444455555555554 344444444444 23444444444
Q ss_pred HHHHhcC-ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh
Q 048737 179 TMLLDAD-EPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS 257 (274)
Q Consensus 179 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 257 (274)
.++++.+ +...+...+..+.. .++..+-...+.++.+.|+ ..+...+-+..+.+. .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH
Confidence 4444432 12334444444442 2344455555666666655 334444444443321 123455555555554
Q ss_pred -HHHHHHHHH
Q 048737 258 -MRDRFDSLE 266 (274)
Q Consensus 258 -a~~~~~~~~ 266 (274)
|...+..+.
T Consensus 252 ~a~p~L~~l~ 261 (280)
T PRK09687 252 TLLPVLDTLL 261 (280)
T ss_pred hHHHHHHHHH
Confidence 444444443
No 310
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=5.5 Score=31.60 Aligned_cols=16 Identities=6% Similarity=0.023 Sum_probs=8.8
Q ss_pred ChhhHHHHHHHHHhcC
Q 048737 79 DSTHTVQLWDIMVGIG 94 (274)
Q Consensus 79 ~~~~a~~~~~~~~~~~ 94 (274)
+.+....++..+...+
T Consensus 37 ~~~~~e~l~~~Ird~~ 52 (393)
T KOG0687|consen 37 KAAAREKLLAAIRDED 52 (393)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 4445555566665555
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.74 E-value=0.51 Score=24.22 Aligned_cols=25 Identities=4% Similarity=0.201 Sum_probs=12.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHH
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQM 127 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (274)
+++.|...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4444555555555555555555444
No 312
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.63 E-value=9.3 Score=33.93 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLL 182 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (274)
+.+--+.-+...|+-.+|.++-.++. -||...|-.=+.++...++|++-+++-..+. ++.-|.-++.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 44444555666788888888877775 3788888888888888888877655544332 2556777888888
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHH
Q 048737 183 DADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAE 230 (274)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 230 (274)
+.|+.++|...+.+... +.-.+.+|.+.|++.+|.++--
T Consensus 756 ~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHH
Confidence 88888888877654321 1146777888888888776543
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.58 E-value=0.099 Score=36.16 Aligned_cols=53 Identities=9% Similarity=0.189 Sum_probs=23.4
Q ss_pred HHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHH
Q 048737 71 LDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFD 125 (274)
Q Consensus 71 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 125 (274)
+..+.+.+.++....+++.+...+ ...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKEN--KENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTS--TC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcc--cccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 334444444444444555554433 22334444555555555544444444444
No 314
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.95 E-value=11 Score=33.51 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=37.4
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHHHhCCChhhHHHHHHHHHh
Q 048737 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFP----TLKFFSNALDILVKLNDSTHTVQLWDIMVG 92 (274)
Q Consensus 29 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 92 (274)
..+|..+++.....|+.+.|..+++.=...+... +..-+...+.-+.+.|+.+-...++-.+..
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 4577888888888888888888876433322110 112233445555666666666655555443
No 315
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.88 E-value=4.9 Score=29.35 Aligned_cols=89 Identities=12% Similarity=0.162 Sum_probs=54.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhH-----HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTY-----NMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLL 182 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (274)
...+..++++++|..-++..... |....+ -.|.+.....|.+++|+..++.....+. .......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 35577777777777777766643 222222 2344556667777777777776655432 2223344456677
Q ss_pred hcCChHHHHHHHHHHHHCC
Q 048737 183 DADEPEFAIEIWNYILENG 201 (274)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~ 201 (274)
..|+-++|+.-|.+....+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777777664
No 316
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.77 E-value=8.8 Score=32.05 Aligned_cols=141 Identities=13% Similarity=0.104 Sum_probs=88.3
Q ss_pred ccccchHHHHHHHHHHHhccCCCCc---hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HHhC
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPE---HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI--LVKL 77 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ 77 (274)
.+.+++++|.++|.++-++..-.|. ....-+.++++|... +.+.....+....+. .| ...|-.+..+ +.+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 4678999999999999775221120 012234566666544 466666666666553 23 3334444443 4578
Q ss_pred CChhhHHHHHHHHHhc--CCccC-----------ccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC----CCChhhHH
Q 048737 78 NDSTHTVQLWDIMVGI--GFNLM-----------PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGA----FPDSLTYN 140 (274)
Q Consensus 78 ~~~~~a~~~~~~~~~~--~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~ 140 (274)
+++.+|.+.+...... +. .+ +|...=++.++++...|++.+++.+++++...=. .-+..+|+
T Consensus 93 k~~~kal~~ls~w~~~~~~~-~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGT-ESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhHHHHHHHHHHHHhhhccc-ccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 8999998887766654 21 11 2333446778889999999999999998865422 24778888
Q ss_pred HHHHHHHh
Q 048737 141 MIFECLIK 148 (274)
Q Consensus 141 ~li~~~~~ 148 (274)
.++-.+++
T Consensus 172 ~~vlmlsr 179 (549)
T PF07079_consen 172 RAVLMLSR 179 (549)
T ss_pred HHHHHHhH
Confidence 75555444
No 317
>PHA02875 ankyrin repeat protein; Provisional
Probab=90.65 E-value=5.2 Score=33.28 Aligned_cols=202 Identities=11% Similarity=0.100 Sum_probs=95.5
Q ss_pred HHHHHHHHhccCCCCchHhH--HHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhCCChhhHHHHH
Q 048737 12 NKTFGEMVERFEWNPEHVLA--YETFLITLIRGKQVDEALKFLRVMKGENCFPTLK--FFSNALDILVKLNDSTHTVQLW 87 (274)
Q Consensus 12 ~~~~~~~~~~~~~~p~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~ 87 (274)
.++++.+.+. |..| +... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|+.+.+..++
T Consensus 15 ~~iv~~Ll~~-g~~~-n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 15 LDIARRLLDI-GINP-NFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHHHHC-CCCC-CccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 3456666664 7776 3321 2334455566677653 33444555544422 1123455556777776655544
Q ss_pred HHHHhcCCccCccH---HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH--HHHHHHHHhcCCHhHHHHHHHHH
Q 048737 88 DIMVGIGFNLMPNL---IMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTY--NMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 88 ~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
+ .| ...+. ..-.+.+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+-+.. +
T Consensus 89 ~----~~--~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~----L 154 (413)
T PHA02875 89 D----LG--KFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL----L 154 (413)
T ss_pred H----cC--CcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----H
Confidence 3 33 11110 0112233344455554 344455555655543221 223344456676654433 3
Q ss_pred HhCCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHH---HHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 048737 163 IKNEWQPTP---LNCATAITMLLDADEPEFAIEIWNYILENGILPLEAS---ANVLLVGLRNLGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 163 ~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 236 (274)
.+.|..++. .-. +.+...+..|+.+-+ +.+.+.|..|+... ..+.+...+..|+. ++.+-+.+.|
T Consensus 155 l~~g~~~~~~d~~g~-TpL~~A~~~g~~eiv----~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~g 225 (413)
T PHA02875 155 IDHKACLDIEDCCGC-TPLIIAMAKGDIAIC----KMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRG 225 (413)
T ss_pred HhcCCCCCCCCCCCC-CHHHHHHHcCCHHHH----HHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCC
Confidence 444443332 222 233444556665543 34455665554322 12344434455554 3556666777
Q ss_pred CccCHH
Q 048737 237 ILIYDV 242 (274)
Q Consensus 237 ~~~~~~ 242 (274)
..++..
T Consensus 226 ad~n~~ 231 (413)
T PHA02875 226 ADCNIM 231 (413)
T ss_pred cCcchH
Confidence 777653
No 318
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.51 E-value=0.78 Score=24.38 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=11.8
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhC
Q 048737 212 LLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 212 l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344455555555555555554433
No 319
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.30 E-value=4.5 Score=34.90 Aligned_cols=101 Identities=8% Similarity=0.060 Sum_probs=71.0
Q ss_pred HHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCCh
Q 048737 38 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDV 117 (274)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (274)
...+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|.+.... ..|+-.+...|+-
T Consensus 646 lal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~-----------~~LlLl~t~~g~~ 708 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARDL-----------GSLLLLYTSSGNA 708 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcch-----------hhhhhhhhhcCCh
Confidence 4467788888888776543 4667888999999999999998888776543 3456667777777
Q ss_pred hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 048737 118 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHE 161 (274)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (274)
+....+-....+.|. .|...-+|...|+++++.+++..
T Consensus 709 ~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 709 EGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 766666666666653 23334466677888888777644
No 320
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.17 E-value=5.7 Score=28.99 Aligned_cols=220 Identities=13% Similarity=0.040 Sum_probs=154.2
Q ss_pred cCcHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhCCChhhHHHHHHHHHhc-CCccCccHHhHHHHHHHHHhcCChhh
Q 048737 42 GKQVDEALKFLRVMKGENCF-PTLKFFSNALDILVKLNDSTHTVQLWDIMVGI-GFNLMPNLIMYNAVVGLLCNNNDVDN 119 (274)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (274)
.+....+...+......... .....+......+...+.+..+...+...... . .......+......+...++++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELEL--LPNLAEALLNLGLLLEALGKYEE 113 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh--ccchHHHHHHHHHHHHHHhhHHH
Confidence 46667777777777664322 13577788888889999999999999888762 2 35667778888888889999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHH-HHHhcCCHhHHHHHHHHHHhCCCCC----CcchHHHHHHHHHhcCChHHHHHHH
Q 048737 120 VFRFFDQMVFHGAFPDSLTYNMIFE-CLIKNKKVHEVENFFHEMIKNEWQP----TPLNCATAITMLLDADEPEFAIEIW 194 (274)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 194 (274)
+.+.+.........+ ......... .+...|+++.+...+.+.... .| ....+......+...++.+.+...+
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 190 (291)
T COG0457 114 ALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELL 190 (291)
T ss_pred HHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence 999999988754333 222333333 788999999999999998652 33 2334444445567789999999999
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHH
Q 048737 195 NYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLER 267 (274)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 267 (274)
..............+..+...+...++++.+...+......... ....+..+...+...+.. +...+....+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 191 EKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99887543214677888888899999999999999998876322 234444444444444433 5555554443
No 321
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.97 E-value=3.4 Score=33.02 Aligned_cols=93 Identities=9% Similarity=0.045 Sum_probs=57.7
Q ss_pred HHHHhccCcHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhc
Q 048737 36 LITLIRGKQVDEALKFLRVMKGENCFP-TLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNN 114 (274)
Q Consensus 36 i~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (274)
.+-|.+.|.+++|++.|...... .| ++.++..-..+|.+...+..|+.=-+.++..+ ..-.-.|+.-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd---~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD---KLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh---HHHHHHHHHHHHHHHHH
Confidence 34577788888888888776653 45 77777777888888887777766666665543 12223344444444444
Q ss_pred CChhhHHHHHHHHHhcCCCCC
Q 048737 115 NDVDNVFRFFDQMVFHGAFPD 135 (274)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~ 135 (274)
|...+|.+-++..+. +.|+
T Consensus 179 g~~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLA--LEPK 197 (536)
T ss_pred hhHHHHHHhHHHHHh--hCcc
Confidence 555566655555555 3454
No 322
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.71 E-value=6.2 Score=29.49 Aligned_cols=76 Identities=9% Similarity=-0.001 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCC--CCCCcchHHHHHHH
Q 048737 104 YNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNE--WQPTPLNCATAITM 180 (274)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 180 (274)
.+.-+..+.+.++.++|+...++-.+.. +.|..+-..+++.+|-.|+|++|..-++..-... ..+-..+|..+|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3444566677777888888777766653 2355666677788888888888877776655421 12223455555553
No 323
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.50 E-value=9.6 Score=30.59 Aligned_cols=139 Identities=12% Similarity=0.166 Sum_probs=92.0
Q ss_pred CCchHhHHHHHHHHHhcc------------CcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHh
Q 048737 25 NPEHVLAYETFLITLIRG------------KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVG 92 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 92 (274)
.|.|+.+|-.++..--.. .-.+.-+.++++.++.+ +-+......++..+.+.-+.+...+-|+++..
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 788999999988653322 12456678888888773 45667777888888888888888899999988
Q ss_pred cCCccCccHHhHHHHHHHHHh---cCChhhHHHHHHHHHhc------CC------CCC-----hhhHHHHHHHHHhcCCH
Q 048737 93 IGFNLMPNLIMYNAVVGLLCN---NNDVDNVFRFFDQMVFH------GA------FPD-----SLTYNMIFECLIKNKKV 152 (274)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~------~~------~~~-----~~~~~~li~~~~~~~~~ 152 (274)
.. +-+...|...++.... .-.++....+|.+.... +. .++ ...+..+...+...|..
T Consensus 94 ~~---~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~ 170 (321)
T PF08424_consen 94 KN---PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYT 170 (321)
T ss_pred HC---CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCch
Confidence 75 4567788887776554 23455666666554321 11 001 12233344445567888
Q ss_pred hHHHHHHHHHHhCCC
Q 048737 153 HEVENFFHEMIKNEW 167 (274)
Q Consensus 153 ~~a~~~~~~~~~~~~ 167 (274)
+.|..++..+.+.++
T Consensus 171 E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 171 ERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHc
Confidence 888888888887654
No 324
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.28 E-value=12 Score=31.34 Aligned_cols=206 Identities=12% Similarity=0.149 Sum_probs=121.2
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHH-------HHHHHH-hCC---ChhhHHHHHHHHHhcCCc
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN-------ALDILV-KLN---DSTHTVQLWDIMVGIGFN 96 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~-~~~---~~~~a~~~~~~~~~~~~~ 96 (274)
-+.++..++....+.++..+|...+.-+.. +.|+...-.- +-+..+ ... +...-..+|+.....+
T Consensus 297 li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D-- 372 (549)
T PF07079_consen 297 LIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD-- 372 (549)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--
Confidence 455777788888888888888888776654 2344332211 122222 111 2233345555555443
Q ss_pred cCccHHhHHHHH---HHHHhcCC-hhhHHHHHHHHHhcCCCC-ChhhHHHHH----HHHHh---cCCHhHHHHHHHHHHh
Q 048737 97 LMPNLIMYNAVV---GLLCNNND-VDNVFRFFDQMVFHGAFP-DSLTYNMIF----ECLIK---NKKVHEVENFFHEMIK 164 (274)
Q Consensus 97 ~~~~~~~~~~l~---~~~~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~~~li----~~~~~---~~~~~~a~~~~~~~~~ 164 (274)
+.. ......|+ .-+.+.|. -++|+++++...+- .| |..+-|.+. ..|.+ ...+..-..+-+-+.+
T Consensus 373 iDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e 449 (549)
T PF07079_consen 373 IDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITE 449 (549)
T ss_pred ccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 211 12222333 23555666 78899999988774 23 333333322 22322 1234444555555566
Q ss_pred CCCCCCcch----HHHHHH--HHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 048737 165 NEWQPTPLN----CATAIT--MLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRIL 238 (274)
Q Consensus 165 ~~~~~~~~~----~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 238 (274)
.|++|-... -|.|.+ .+...|++.++.-.-..+.+ +.|++.+|..+--++....++++|+.++..+ +
T Consensus 450 ~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P 522 (549)
T PF07079_consen 450 VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----P 522 (549)
T ss_pred cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----C
Confidence 787775433 333332 34567899888766555555 6789999999999999999999999999875 5
Q ss_pred cCHHHHHHH
Q 048737 239 IYDVTMQKL 247 (274)
Q Consensus 239 ~~~~~~~~l 247 (274)
|+..++.+=
T Consensus 523 ~n~~~~dsk 531 (549)
T PF07079_consen 523 PNERMRDSK 531 (549)
T ss_pred CchhhHHHH
Confidence 666666553
No 325
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.06 E-value=1.4 Score=21.41 Aligned_cols=27 Identities=11% Similarity=0.297 Sum_probs=14.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555566666555555543
No 326
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.68 E-value=5.9 Score=28.54 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcC----C-------HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 048737 118 DNVFRFFDQMVFHGAFPD-SLTYNMIFECLIKNK----K-------VHEVENFFHEMIKNEWQPTPLNCATAITMLLDAD 185 (274)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (274)
++|++-|++.+. +.|+ ..++..+..+|...+ + +++|...|.+..+ ..|+..+|..-+....
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~--- 124 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA--- 124 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH---
Confidence 334444444444 3455 345555555554432 2 3344444444444 4577777777766653
Q ss_pred ChHHHHHHHHHHHHCC
Q 048737 186 EPEFAIEIWNYILENG 201 (274)
Q Consensus 186 ~~~~a~~~~~~~~~~~ 201 (274)
+|-++..++.+.+
T Consensus 125 ---kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 ---KAPELHMEIHKQG 137 (186)
T ss_dssp ---THHHHHHHHHHSS
T ss_pred ---hhHHHHHHHHHHH
Confidence 3555555555544
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.67 E-value=1.2 Score=21.58 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=15.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhc
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKG 57 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 57 (274)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555556666666666666655543
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.60 E-value=0.73 Score=21.11 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=13.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHH
Q 048737 32 YETFLITLIRGKQVDEALKFLR 53 (274)
Q Consensus 32 ~~~li~~~~~~~~~~~a~~~~~ 53 (274)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445566666666666666554
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.54 E-value=6.5 Score=27.36 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=36.5
Q ss_pred HHhHHHHHHHH---HhcCChhhHHHHHHHHHhcCCCCChhhHH-HHHHHHHhcCCHhHHHHHHHHHHhCC
Q 048737 101 LIMYNAVVGLL---CNNNDVDNVFRFFDQMVFHGAFPDSLTYN-MIFECLIKNKKVHEVENFFHEMIKNE 166 (274)
Q Consensus 101 ~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (274)
..+.+.|++.. ...++.+++..+++.|.-. .|+..-.. .-...+...|+|.+|..+|+...+.+
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 33444444432 3467777777777777653 44432221 12223467777888888887776653
No 330
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.51 E-value=12 Score=30.39 Aligned_cols=231 Identities=11% Similarity=0.079 Sum_probs=137.3
Q ss_pred HhccCcHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCcc---CccHHhHHHHHHHHHh
Q 048737 39 LIRGKQVDEALKFLRVMKGE--NCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNL---MPNLIMYNAVVGLLCN 113 (274)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~ 113 (274)
+....+.++|+..+.+-..+ +....-.+|..+..+.++.|.++++...--.-++...+. ..-...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777666555432 111123456667777788888777664422211110001 1224566777777777
Q ss_pred cCChhhHHHHHHHHHhc-CCCCC---hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC---C--CcchHHHHHHHHHhc
Q 048737 114 NNDVDNVFRFFDQMVFH-GAFPD---SLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQ---P--TPLNCATAITMLLDA 184 (274)
Q Consensus 114 ~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~ 184 (274)
..++.+++.+-..-... |..|. -....++..++...+.++++++.|+...+-... | ....+..|-..|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 77777777776654432 22231 133445667777778899999999887653211 1 235788999999999
Q ss_pred CChHHHHHHHHHHHH----CCCCccH-----HHHHHHHHHHHhcCCcchHHHHHHHHHh----CCCcc-CHHHHHHHHHH
Q 048737 185 DEPEFAIEIWNYILE----NGILPLE-----ASANVLLVGLRNLGRLSDVRRFAEEMLN----RRILI-YDVTMQKLKKA 250 (274)
Q Consensus 185 ~~~~~a~~~~~~~~~----~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~~-~~~~~~~l~~~ 250 (274)
.|+++|.....+..+ .++..-. .+.-.+.-++...|..-.|.+..++..+ .|-.| -......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999998877766544 2221111 1222344567788998888888887644 34333 23455667778
Q ss_pred HHhcChh--HHHHHHHHHHHh
Q 048737 251 FYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 251 ~~~~g~~--a~~~~~~~~~~~ 269 (274)
|...|+. |..-++.+...+
T Consensus 256 yR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHhcccHhHHHHHHHHHHHHH
Confidence 8888877 666666555443
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.39 E-value=0.93 Score=21.73 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=10.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHh
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
..++.+.|++++|.+.|+++.+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3444444555555555554444
No 332
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.11 E-value=2.2 Score=22.68 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=13.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 048737 177 AITMLLDADEPEFAIEIWNYILEN 200 (274)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~ 200 (274)
|..+|...|+.+.|..+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445556666666666666665543
No 333
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.09 E-value=11 Score=29.51 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 048737 136 SLTYNMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
...+..+..-|++.++.+.+.+..++.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 345555666666666666665555443
No 334
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.04 E-value=2.2 Score=25.94 Aligned_cols=46 Identities=9% Similarity=0.121 Sum_probs=22.1
Q ss_pred hcCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHhHHHHH
Q 048737 113 NNNDVDNVFRFFDQMVFHGAFPD--SLTYNMIFECLIKNKKVHEVENF 158 (274)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~ 158 (274)
..++-++|+..|...++.-..|. -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544322211 13445555555555555555444
No 335
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.97 E-value=8.6 Score=28.14 Aligned_cols=134 Identities=7% Similarity=0.063 Sum_probs=84.0
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHH--HHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHH
Q 048737 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS--NALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNA 106 (274)
Q Consensus 29 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (274)
...|..++.... .+.+ +.....+++....-.....++. .+...+...++++.|+.-+++......+-.....+--.
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 345666766654 3334 5556666666543122222222 23466788899999999999887542000111223334
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 048737 107 VVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNE 166 (274)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (274)
|.+.....|.+|+|+.+++.....+. .......-...+...|+-++|..-|...++.+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 55667788999999999988765422 22334445567889999999999999988865
No 336
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=87.81 E-value=2.3 Score=24.59 Aligned_cols=47 Identities=11% Similarity=0.203 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhc
Q 048737 7 NVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 57 (274)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 57 (274)
.++...++.+.++.. .. |-.-.-.+|.++...|++++|.++++++.+
T Consensus 5 ~~~~~~~~~~~lR~~---RH-D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ---RH-DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455566666666553 33 444555678888888888888888877654
No 337
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.53 E-value=9.3 Score=29.71 Aligned_cols=91 Identities=10% Similarity=-0.045 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 048737 104 YNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD 183 (274)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (274)
+-.=|.+++..++|.+++...-+--+.--+........-|-.|.+.+.+..+.++-+.-....-.-+...|.+++..|..
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 34446888888999888776555433222223445555566778999998888888777664222334457777666654
Q ss_pred -----cCChHHHHHHH
Q 048737 184 -----ADEPEFAIEIW 194 (274)
Q Consensus 184 -----~~~~~~a~~~~ 194 (274)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 58999998876
No 338
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.32 E-value=24 Score=32.52 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=22.6
Q ss_pred HHhcCCcchHHHHHHHHHh-------------CCCccCHHHHHHHHHHHHhc
Q 048737 216 LRNLGRLSDVRRFAEEMLN-------------RRILIYDVTMQKLKKAFYNE 254 (274)
Q Consensus 216 ~~~~g~~~~a~~~~~~m~~-------------~~~~~~~~~~~~l~~~~~~~ 254 (274)
+.+.|+.++|+.++-.... ....++...|..+++.+...
T Consensus 694 l~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 694 LGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred HhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 3466666666666555443 12334666777777776655
No 339
>PHA02875 ankyrin repeat protein; Provisional
Probab=87.23 E-value=15 Score=30.50 Aligned_cols=26 Identities=8% Similarity=0.194 Sum_probs=11.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcc
Q 048737 176 TAITMLLDADEPEFAIEIWNYILENGILPL 205 (274)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 205 (274)
+++...+..|+.+-+ +.+.+.|..++
T Consensus 204 t~l~~A~~~~~~~iv----~~Ll~~gad~n 229 (413)
T PHA02875 204 AALCYAIENNKIDIV----RLFIKRGADCN 229 (413)
T ss_pred hHHHHHHHcCCHHHH----HHHHHCCcCcc
Confidence 344434445554432 33334555444
No 340
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.01 E-value=28 Score=32.97 Aligned_cols=174 Identities=14% Similarity=0.094 Sum_probs=95.2
Q ss_pred HHHHhccCcHHHHHHHHHHHhcC-----CCCCCH--HHHHHHHHHHHhCC--ChhhHHHHHH------HHHhcCCccCcc
Q 048737 36 LITLIRGKQVDEALKFLRVMKGE-----NCFPTL--KFFSNALDILVKLN--DSTHTVQLWD------IMVGIGFNLMPN 100 (274)
Q Consensus 36 i~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~--~~~~~l~~~~~~~~--~~~~a~~~~~------~~~~~~~~~~~~ 100 (274)
+-+-..+.++.+=+-+++++... .++.|. .-|...+.-+..+| -+++...+.+ ..... +.|+
T Consensus 858 ~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~l---y~~~ 934 (1265)
T KOG1920|consen 858 LVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALAL---YKPD 934 (1265)
T ss_pred HHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhhe---eccC
Confidence 33445567788888888777632 112221 12334444444444 3344433322 22222 2455
Q ss_pred HHhHHHHH----HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcc--hH
Q 048737 101 LIMYNAVV----GLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPL--NC 174 (274)
Q Consensus 101 ~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~ 174 (274)
...+.... +.+.....+++|--.|+..-+ ....+.+|...|+|.+|..+..++... -+.. +-
T Consensus 935 ~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a 1002 (1265)
T KOG1920|consen 935 SEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILA 1002 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHH
Confidence 55544444 444556777777777765432 123566788888888888887766431 1221 12
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 048737 175 ATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEM 232 (274)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 232 (274)
..|+.-+...+++-+|-++..+.... | ...+..|++...+++|..+...-
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 45667777778887777776655432 1 22344556666777777665543
No 341
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=86.98 E-value=1.8 Score=33.86 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=30.0
Q ss_pred CCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHH
Q 048737 24 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 68 (274)
Q Consensus 24 ~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 68 (274)
+.|++...|+.-|....+.|++++|+.++++..+.|+.--..+|-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 345455556677777777777777777777777777554444443
No 342
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.64 E-value=15 Score=29.57 Aligned_cols=65 Identities=14% Similarity=0.040 Sum_probs=42.4
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048737 135 DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQP---TPLNCATAITMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (274)
...+|..+...+.+.|+++.|...+..+...+..+ ++.....-.+..-..|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667777777888888888888887776543111 233444445556667777777777766665
No 343
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.59 E-value=2.1 Score=26.03 Aligned_cols=46 Identities=7% Similarity=0.077 Sum_probs=28.0
Q ss_pred ccCcHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhCCChhhHHHH
Q 048737 41 RGKQVDEALKFLRVMKGENCFPT--LKFFSNALDILVKLNDSTHTVQL 86 (274)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 86 (274)
..++.++|+..+....+.-..+. -.++..|+.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777666432222 23455666777777777666654
No 344
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=86.37 E-value=2.4 Score=20.03 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=19.8
Q ss_pred cchHHHHHHHHHHHhccCCCCchHhHHHHHHH
Q 048737 6 GNVVEANKTFGEMVERFEWNPEHVLAYETFLI 37 (274)
Q Consensus 6 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~ 37 (274)
|+.+.|..+|+++... .|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~---~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEK---FPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHH---CCCChHHHHHHHH
Confidence 4677788888887766 4556667766554
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.56 E-value=16 Score=28.75 Aligned_cols=59 Identities=8% Similarity=0.083 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 048737 138 TYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYI 197 (274)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (274)
+++.....|..+|.+.+|.++.++.+... +.+...+-.|+..+...|+--.|..-++++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445566667777777777776666543 445566666777777777655555554444
No 346
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=85.45 E-value=9 Score=25.82 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 83 TVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
..+-++.+...+ +.|++.+...-++++.+.+|+..|.++|+-.+..
T Consensus 68 vrkglN~l~~yD--lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYD--LVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccc--cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 444555555555 6666666666666666666666666666666543
No 347
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=84.23 E-value=12 Score=26.09 Aligned_cols=59 Identities=24% Similarity=0.199 Sum_probs=24.5
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 048737 161 EMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLG 220 (274)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 220 (274)
.+.+.|++++.. -..+++.+...++.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334444443322 22344444444444445555555555444333333333333333333
No 348
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.20 E-value=16 Score=27.78 Aligned_cols=120 Identities=10% Similarity=-0.035 Sum_probs=70.7
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhCCChh
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF-FSNALDILVKLNDST 81 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 81 (274)
....+++.|...|.+.... .|..+..|+.-+-.+.+..+|+.+..=-.+.++ +.|+..- .-.+.........++
T Consensus 21 f~~k~y~~ai~~y~raI~~---nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICI---NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cchhhhchHHHHHHHHHhc---CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 3445677777766666443 774456667777777777888777766666555 3455432 333445556667777
Q ss_pred hHHHHHHHHHhcC--CccCccHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 048737 82 HTVQLWDIMVGIG--FNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQM 127 (274)
Q Consensus 82 ~a~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (274)
.|...+.+....+ .++++-...++.|..+--+.-...+..++.+..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 7877777764322 113444556666666655544455555555443
No 349
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.43 E-value=9.3 Score=25.75 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048737 154 EVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (274)
+..+-+..+..-.+.|++.....-+++|-+.+|+..|.++|+-++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555555555555543
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.35 E-value=9.7 Score=24.51 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=20.2
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 048737 111 LCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (274)
+...|++++|..+.+.+ ..||...|-.+.. .+.|--++...-+.+|..+
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 44444454444444433 2344444444432 2333333333333344333
No 351
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=83.19 E-value=13 Score=25.83 Aligned_cols=93 Identities=12% Similarity=0.070 Sum_probs=54.9
Q ss_pred HHhcCCCCCh--hhHHHHHHHHHhcCCHhHHHHHHHHHHhCC-----CCCCcchHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 048737 127 MVFHGAFPDS--LTYNMIFECLIKNKKVHEVENFFHEMIKNE-----WQPTPLNCATAITMLLDADE-PEFAIEIWNYIL 198 (274)
Q Consensus 127 ~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 198 (274)
|.+.+..++. ...++++.-....+++.....+++.+.... -..+...|.+++.+.+...- ---+..+|..++
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3433444443 334666666666667777777666663210 02345567777777755444 334566677777
Q ss_pred HCCCCccHHHHHHHHHHHHhc
Q 048737 199 ENGILPLEASANVLLVGLRNL 219 (274)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~ 219 (274)
+.+.+++..-|..++.++.+.
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 666777777777777766554
No 352
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.06 E-value=21 Score=28.07 Aligned_cols=126 Identities=13% Similarity=0.106 Sum_probs=64.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH-------HHHHHHHHhcCCHhHHHHHHHHHHh----CCCCCCcchHH
Q 048737 107 VVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTY-------NMIFECLIKNKKVHEVENFFHEMIK----NEWQPTPLNCA 175 (274)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 175 (274)
+.+-..+.+++++|+..+.+++..|+..|..+. ..+...|...|+...--++.....+ -..+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 344455677888888888888887777665443 3456667777766654444433221 11111223344
Q ss_pred HHHHHHHh-cCChHHHHHHHHHHHHCCCCccH-----HHHHHHHHHHHhcCCcchHHHHHHHH
Q 048737 176 TAITMLLD-ADEPEFAIEIWNYILENGILPLE-----ASANVLLVGLRNLGRLSDVRRFAEEM 232 (274)
Q Consensus 176 ~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m 232 (274)
+|+..+.. ...++....+.....+...+-+. ..=.-++..+.+.|++.+|+.+...+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44444433 23455555555555443222211 11223445555666666665554433
No 353
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=83.03 E-value=2 Score=29.13 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=18.0
Q ss_pred hcCCcchHHHHHHHHHhCCCccCHHHHHHHHHH
Q 048737 218 NLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKA 250 (274)
Q Consensus 218 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 250 (274)
..|.-.+|..+|+.|++.|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34555566666666666666665 34555544
No 354
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=82.86 E-value=16 Score=26.56 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=10.8
Q ss_pred HHHhccCcHHHHHHHHHHHhc
Q 048737 37 ITLIRGKQVDEALKFLRVMKG 57 (274)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~ 57 (274)
..|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345555555555555555543
No 355
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=82.75 E-value=5.4 Score=21.60 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=20.7
Q ss_pred HhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048737 39 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 72 (274)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 72 (274)
..+.|-.+++..++++|.+.|+..++..+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666666666666666666666666655543
No 356
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=82.52 E-value=5.9 Score=21.44 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=16.5
Q ss_pred hcCCcchHHHHHHHHHhCCCccCHHHHHHHH
Q 048737 218 NLGRLSDVRRFAEEMLNRRILIYDVTMQKLK 248 (274)
Q Consensus 218 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 248 (274)
+.|-.+++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4445555555555555555555555554444
No 357
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.32 E-value=31 Score=29.58 Aligned_cols=180 Identities=8% Similarity=0.060 Sum_probs=127.9
Q ss_pred CCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH
Q 048737 60 CFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTY 139 (274)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (274)
.+.|.....+++..+...-.+.-++.+-.++...| .+-..+..++.+|... ..++-..+|+++.+..+ |....
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~----e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~ 134 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG----ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVI 134 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHH
Confidence 34567777888999988888888999999999866 6778899999999998 67788999999988644 44455
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCC--C---cchHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCccHHHHHHHH
Q 048737 140 NMIFECLIKNKKVHEVENFFHEMIKNEWQP--T---PLNCATAITMLLDADEPEFAIEIWNYILE-NGILPLEASANVLL 213 (274)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~ 213 (274)
..-+..+...++..++..+|.+....=++. + ...|..|...- ..+.+....+...+.. .|...-...+.-+-
T Consensus 135 ~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 135 GRELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 544444555588899999999887543211 1 12455554431 3577777777777765 35445556777777
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHH
Q 048737 214 VGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKK 249 (274)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 249 (274)
.-|....++++|++++..+.+..-. |...-..++.
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 8899999999999999988776422 3333333443
No 358
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.21 E-value=39 Score=30.01 Aligned_cols=150 Identities=11% Similarity=0.020 Sum_probs=70.9
Q ss_pred HhHHHHHHHHH-hcCChhhHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC----CCc
Q 048737 102 IMYNAVVGLLC-NNNDVDNVFRFFDQMVFHGAFPDS-----LTYNMIFECLIKNKKVHEVENFFHEMIKNEWQ----PTP 171 (274)
Q Consensus 102 ~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~ 171 (274)
.++-.+...+. ...+.+.|+..+.+....--+++- ..-..++..+.+.+... |...+++.++.--. +-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34444455444 456677777777655432211221 11234445555555433 66666665543111 111
Q ss_pred chHHHH-HHHHHhcCChHHHHHHHHHHHHC---CCCccHHHHHHHHHHHH--hcCCcchHHHHHHHHHhCCC--------
Q 048737 172 LNCATA-ITMLLDADEPEFAIEIWNYILEN---GILPLEASANVLLVGLR--NLGRLSDVRRFAEEMLNRRI-------- 237 (274)
Q Consensus 172 ~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~~~~-------- 237 (274)
..|..+ +..+...+++..|.+.++.+... ...|...++..++.+.. +.+..+++.+.++++.....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 122222 22222236777777777666542 12344455555554443 33445666666665533211
Q ss_pred -ccCHHHHHHHHHHHH
Q 048737 238 -LIYDVTMQKLKKAFY 252 (274)
Q Consensus 238 -~~~~~~~~~l~~~~~ 252 (274)
.|-..+|..+++.++
T Consensus 219 ~~~qL~~~~lll~l~~ 234 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCC 234 (608)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 234456666666554
No 359
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.54 E-value=3.1 Score=18.92 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=16.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhc
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKG 57 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 57 (274)
+|..+...+...++++.|...+....+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455566666666666666666666554
No 360
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.09 E-value=22 Score=26.39 Aligned_cols=55 Identities=15% Similarity=0.086 Sum_probs=23.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 180 MLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
++.+.+.++.|+.-..+.++.+. ........-..+|.+...+++|++=|+.+.+.
T Consensus 143 a~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 143 ALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 34444555555544444444332 01111111123344445555555555555544
No 361
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.00 E-value=43 Score=29.75 Aligned_cols=189 Identities=11% Similarity=0.089 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhccCCCCc-hHhHHHHHHHHHh-ccCcHHHHHHHHHHHhcCCCCCCHH-----HHHHHHHHHHhCCChh
Q 048737 9 VEANKTFGEMVERFEWNPE-HVLAYETFLITLI-RGKQVDEALKFLRVMKGENCFPTLK-----FFSNALDILVKLNDST 81 (274)
Q Consensus 9 ~~a~~~~~~~~~~~~~~p~-~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~ 81 (274)
..|++.++-+.+.....|. ...++-.++..+. ...+++.|...+++.....-+++-. .-..++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 3456666666543444441 1234555666665 6688999999998775432223221 1234456666666555
Q ss_pred hHHHHHHHHHhcCCc--cCccHHhHHHH-HHHHHhcCChhhHHHHHHHHHhcC---CCCChhhHHHHHHHHH--hcCCHh
Q 048737 82 HTVQLWDIMVGIGFN--LMPNLIMYNAV-VGLLCNNNDVDNVFRFFDQMVFHG---AFPDSLTYNMIFECLI--KNKKVH 153 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~--~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~~~~~ 153 (274)
|.+..++.++.-.+ ..+-...|.-+ +..+...+++..|.+.++.+...- ..|-..++..++.+.. +.+.++
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888887764310 11223333333 233333478999999988876532 2233444555555543 445566
Q ss_pred HHHHHHHHHHhCCC---------CCCcchHHHHHHHHH--hcCChHHHHHHHHHHH
Q 048737 154 EVENFFHEMIKNEW---------QPTPLNCATAITMLL--DADEPEFAIEIWNYIL 198 (274)
Q Consensus 154 ~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 198 (274)
++.+.+..+..... .|-..+|..+++.++ ..|+++.+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777766633211 223445666666554 4677667666655543
No 362
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.94 E-value=11 Score=27.56 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=14.6
Q ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 048737 204 PLEASANVLLVGLRNLGRLSDVRRFAEEML 233 (274)
Q Consensus 204 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 233 (274)
|+..+|..++.++...|+.++|.++..++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444445555555544444443
No 363
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=79.68 E-value=29 Score=27.88 Aligned_cols=70 Identities=11% Similarity=0.237 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhc---CCCCChhhHH--HHHHHHHhcCCHhHHHHHHHHHHh-----CCCCCCcc
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFH---GAFPDSLTYN--MIFECLIKNKKVHEVENFFHEMIK-----NEWQPTPL 172 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 172 (274)
....++...-+.++.++|+++++++.+. --.|+.+.|. .+...+...||.+++.+.++...+ .+++|+.+
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3445556666677888888888887543 2345655554 445556677888888888887776 46666543
No 364
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=79.58 E-value=18 Score=25.14 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=17.7
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcC
Q 048737 55 MKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIG 94 (274)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 94 (274)
+.+.|.++++.- ..++..+...++.-.|..+|+++.+.+
T Consensus 12 lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 12 LKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 334444443332 233444444444455555555555544
No 365
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.15 E-value=84 Score=32.58 Aligned_cols=153 Identities=9% Similarity=0.036 Sum_probs=87.3
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 048737 69 NALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148 (274)
Q Consensus 69 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 148 (274)
.+..+-.+++.+..|...+++-.....+.......+..+...|...+++|....+...-.. +...+. -|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHh
Confidence 3445666788888888888873111100112344556666688888998888887774221 222333 3344567
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHH-HHHHHhcCCcchHHH
Q 048737 149 NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVL-LVGLRNLGRLSDVRR 227 (274)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~ 227 (274)
.|++..|...|+.+.+.+ ++...+++-++..-...|.+..+....+-..... .+....++.+ +.+--+.+++|....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 788989999999888764 3336667766666666666666655444333321 2222223222 233355566665555
Q ss_pred HH
Q 048737 228 FA 229 (274)
Q Consensus 228 ~~ 229 (274)
..
T Consensus 1540 ~l 1541 (2382)
T KOG0890|consen 1540 YL 1541 (2382)
T ss_pred hh
Confidence 43
No 366
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=79.13 E-value=15 Score=23.97 Aligned_cols=13 Identities=8% Similarity=-0.046 Sum_probs=5.4
Q ss_pred hhHHHHHHHHHhc
Q 048737 81 THTVQLWDIMVGI 93 (274)
Q Consensus 81 ~~a~~~~~~~~~~ 93 (274)
++|..+.+.+...
T Consensus 23 ~EA~tIa~wL~~~ 35 (116)
T PF09477_consen 23 QEANTIADWLEQE 35 (116)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 3444444444433
No 367
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=78.87 E-value=43 Score=29.11 Aligned_cols=187 Identities=12% Similarity=-0.021 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 048737 63 TLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMI 142 (274)
Q Consensus 63 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (274)
+..+|+.-+..-...|+.+.+.-+|++..-- +..=...|-..+.-....|+.+-|..++....+-.++..+.+--.-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~---cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP---CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH---HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 3457777777778888888888888887642 2233455666666666668888888777766554333222222222
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhcCChHHHH---HHHHHHHHCCCCcc--HHHHHHHHH-H
Q 048737 143 FECLIKNKKVHEVENFFHEMIKNEWQPTPL-NCATAITMLLDADEPEFAI---EIWNYILENGILPL--EASANVLLV-G 215 (274)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~--~~~~~~l~~-~ 215 (274)
....-..|++..|..+++...+.- |+.. .-..-+....+.|+.+.+. .++....+....+. ...+....+ .
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 223345678888888888887653 4432 2223344455677777766 33333332111111 111111221 2
Q ss_pred HHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 048737 216 LRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNES 255 (274)
Q Consensus 216 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 255 (274)
+.-.++.+.|..++.++.+. ++++...|..++.-+...+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 34457788888888888765 4666677777777666555
No 368
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.83 E-value=32 Score=27.63 Aligned_cols=138 Identities=9% Similarity=0.128 Sum_probs=90.8
Q ss_pred CCCHHHHHHHHHHHHhCC------------ChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048737 61 FPTLKFFSNALDILVKLN------------DSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMV 128 (274)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (274)
+-|..+|..++..--..- -.+.-..+++++++.. +.+...+..++..+.+..+.+...+-|+++.
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n---p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l 92 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN---PDSERLLLGYLEEGEKVWDSEKLAKKWEELL 92 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456777777665432221 1355667888888875 5678888889999999999999999999998
Q ss_pred hcCCCCChhhHHHHHHHHHh---cCCHhHHHHHHHHHHhC------CC----CCCcc-------hHHHHHHHHHhcCChH
Q 048737 129 FHGAFPDSLTYNMIFECLIK---NKKVHEVENFFHEMIKN------EW----QPTPL-------NCATAITMLLDADEPE 188 (274)
Q Consensus 129 ~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~------~~----~~~~~-------~~~~l~~~~~~~~~~~ 188 (274)
.... -+...|...+..... .-.++....+|.+.++. +. .+-.. .+..+.......|..+
T Consensus 93 ~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E 171 (321)
T PF08424_consen 93 FKNP-GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTE 171 (321)
T ss_pred HHCC-CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchH
Confidence 8632 257778777776554 22466666666655431 11 01111 1223333445779999
Q ss_pred HHHHHHHHHHHCCC
Q 048737 189 FAIEIWNYILENGI 202 (274)
Q Consensus 189 ~a~~~~~~~~~~~~ 202 (274)
.|..+++.+.+.++
T Consensus 172 ~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 172 RAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999888654
No 369
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=78.51 E-value=14 Score=23.23 Aligned_cols=55 Identities=22% Similarity=0.129 Sum_probs=35.9
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhCCC
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-TLKFFSNALDILVKLND 79 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 79 (274)
.|+|..+...+...+...|++++|++.+-.+.+..-.. +...=..++..+.-.|.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 68788888899999999999999999998888764322 23333444444444333
No 370
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=78.51 E-value=11 Score=25.37 Aligned_cols=44 Identities=7% Similarity=0.178 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChhhHHHHHHHH
Q 048737 47 EALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHTVQLWDIM 90 (274)
Q Consensus 47 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 90 (274)
.+.++|..|...|+... +..|..-...+...|++++|.++|+.-
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 88999999998876554 567788888899999999999999864
No 371
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.18 E-value=1.7 Score=34.48 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=41.4
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhCCChhhH
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK-FFSNALDILVKLNDSTHT 83 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a 83 (274)
.|.++.|++.|...... .|+....|..-.+++.+.+.+..|++=+...... .||.. -|-.--.+....|++++|
T Consensus 127 ~G~~~~ai~~~t~ai~l---np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIEL---NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred Ccchhhhhccccccccc---CCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 34555555555555333 4545555555555555555555555555554442 23321 122222333344555555
Q ss_pred HHHHHHHHhcC
Q 048737 84 VQLWDIMVGIG 94 (274)
Q Consensus 84 ~~~~~~~~~~~ 94 (274)
.+.+....+.+
T Consensus 202 a~dl~~a~kld 212 (377)
T KOG1308|consen 202 AHDLALACKLD 212 (377)
T ss_pred HHHHHHHHhcc
Confidence 55555555554
No 372
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=78.12 E-value=3.6 Score=27.94 Aligned_cols=32 Identities=16% Similarity=0.382 Sum_probs=22.8
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048737 112 CNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 145 (274)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (274)
...|.-.+|-.+|.+|+++|-+|| .|+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 344667778888888888887776 46666654
No 373
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=77.81 E-value=10 Score=21.81 Aligned_cols=22 Identities=9% Similarity=0.150 Sum_probs=9.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHH
Q 048737 106 AVVGLLCNNNDVDNVFRFFDQM 127 (274)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~ 127 (274)
.++.++...|++++|.++.+++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444443
No 374
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.65 E-value=13 Score=27.14 Aligned_cols=33 Identities=18% Similarity=0.065 Sum_probs=23.1
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048737 167 WQPTPLNCATAITMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (274)
..|++.+|..++.++...|+.++|.++..++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357777777777777777777777777666655
No 375
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.60 E-value=40 Score=29.50 Aligned_cols=87 Identities=11% Similarity=0.118 Sum_probs=45.8
Q ss_pred hCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHH
Q 048737 76 KLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEV 155 (274)
Q Consensus 76 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 155 (274)
..|+...|.+.+..+.... .....+..-.|.....+.|...+|..++.+.+... ...+.++..+.+++....++++|
T Consensus 619 ~~gn~~~a~~cl~~a~~~~--p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLA--PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhccC--hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 3455566666555554432 11122333344455555556666666665554432 22344555566666666666666
Q ss_pred HHHHHHHHhC
Q 048737 156 ENFFHEMIKN 165 (274)
Q Consensus 156 ~~~~~~~~~~ 165 (274)
++.|+...+.
T Consensus 696 ~~~~~~a~~~ 705 (886)
T KOG4507|consen 696 LEAFRQALKL 705 (886)
T ss_pred HHHHHHHHhc
Confidence 6666665553
No 376
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.33 E-value=40 Score=27.93 Aligned_cols=177 Identities=10% Similarity=0.076 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc---------CCCCC
Q 048737 65 KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH---------GAFPD 135 (274)
Q Consensus 65 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 135 (274)
..+..+..-|..+|+++.|.+.|.+....-.+.......|-.+|..-.-.|+|.....+..+.... .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 356677788899999999999999976643222344566777787778888888887777766553 12223
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCC------CCCCcchHHHHHHHHHhcCChHHHHH-----HHHHHHHCCCCc
Q 048737 136 SLTYNMIFECLIKNKKVHEVENFFHEMIKNE------WQPTPLNCATAITMLLDADEPEFAIE-----IWNYILENGILP 204 (274)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~-----~~~~~~~~~~~~ 204 (274)
...+..+...+ .++++.|.+.|-...... +.|...+....+.+.+-.++-+--.. .|+.+.+ ..|
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle--l~P 306 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE--LEP 306 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh--cCh
Confidence 33444443333 336666666554332211 12322222223333332222222111 1222222 223
Q ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHhC-----CCccCHHHHHHHHH
Q 048737 205 LEASANVLLVGLRNLGRLSDVRRFAEEMLNR-----RILIYDVTMQKLKK 249 (274)
Q Consensus 205 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~l~~ 249 (274)
..+..+..-| .+++...+++++++... -+.|...+...+|+
T Consensus 307 --qlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 307 --QLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred --HHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 3444444433 35677777777776543 23455555555444
No 377
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=77.05 E-value=11 Score=22.43 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccC
Q 048737 7 NVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 43 (274)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~ 43 (274)
+.+.|..++..++.. .-+++..||++...+.+++
T Consensus 12 DtEmA~~mL~DLr~d---ekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLRDD---EKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhcch---hhcChHHHHHHHHHHHHcc
Confidence 456677777777654 3347788998887776653
No 378
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.86 E-value=17 Score=23.43 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=22.0
Q ss_pred HHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcC
Q 048737 38 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIG 94 (274)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 94 (274)
.+...|++++|+.+.+.+ ..||...|..|-. .+.|-.+....-+.++..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344455555555444333 2344444433322 23444444444444444444
No 379
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=76.79 E-value=26 Score=25.48 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=12.0
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 048737 179 TMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~ 199 (274)
-.|.+.|.+++|.+++++..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345556666666666655554
No 380
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=76.76 E-value=5.5 Score=31.25 Aligned_cols=42 Identities=12% Similarity=-0.031 Sum_probs=26.5
Q ss_pred ccHHH-HHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHH
Q 048737 204 PLEAS-ANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQ 245 (274)
Q Consensus 204 ~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 245 (274)
|+... |+.-|..-.+.||+++|+.++++.++.|+.--..+|-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 44333 4567777777777777777777777777654444443
No 381
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.44 E-value=56 Score=29.12 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=38.4
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-------hhhHHHHHHHHHhc
Q 048737 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND-------STHTVQLWDIMVGI 93 (274)
Q Consensus 29 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 93 (274)
...|. +|-.|.|.|++++|.++..+.... .......+...+..+....+ -+....-|++..+.
T Consensus 112 ~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 112 DPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 33565 777889999999999998655543 44445566677777765422 23445555555544
No 382
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=76.16 E-value=21 Score=24.10 Aligned_cols=44 Identities=11% Similarity=0.230 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhcCCccCcc-HHhHHHHHHHHHhcCChhhHHHHHHH
Q 048737 81 THTVQLWDIMVGIGFNLMPN-LIMYNAVVGLLCNNNDVDNVFRFFDQ 126 (274)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 126 (274)
+....+|..|...| +-.. ...|-.....+-..|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~--IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKG--IGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCC--cchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 44677888888877 4443 44567777788888999999888863
No 383
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=76.05 E-value=33 Score=30.49 Aligned_cols=75 Identities=8% Similarity=0.037 Sum_probs=45.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhCCChh------hHHHHHHHHHhcCCccCccHHhHH
Q 048737 34 TFLITLIRGKQVDEALKFLRVMKGEN--CFPTLKFFSNALDILVKLNDST------HTVQLWDIMVGIGFNLMPNLIMYN 105 (274)
Q Consensus 34 ~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~~ 105 (274)
+|..+|..+|++.++..+++.....+ -+.-...+|..|+...+.|.++ .+.+.+++..- .-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l-----n~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL-----NGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc-----CCcchHHH
Confidence 57777777788877777777776532 2222345666677777777653 34444444442 23666777
Q ss_pred HHHHHHHh
Q 048737 106 AVVGLLCN 113 (274)
Q Consensus 106 ~l~~~~~~ 113 (274)
.|+.+...
T Consensus 108 ll~~~sln 115 (1117)
T COG5108 108 LLCQASLN 115 (1117)
T ss_pred HHHHhhcC
Confidence 66665544
No 384
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=75.68 E-value=49 Score=29.01 Aligned_cols=148 Identities=11% Similarity=0.087 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHhC--CChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHh-cCChhhHHHHHHHHHhcCCCCChh
Q 048737 61 FPTLKFFSNALDILVKL--NDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCN-NNDVDNVFRFFDQMVFHGAFPDSL 137 (274)
Q Consensus 61 ~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~ 137 (274)
-|+..+.-+++.-.... ...+.+-.++-.|..- .-|--...| +...|.+ .|+...|.+.+.........-..+
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~---~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINKP---NAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC---CCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 35555555554433322 1223344444444332 123222223 2333444 688999999888776543333345
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 048737 138 TYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLV 214 (274)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 214 (274)
....|.+...+.|....|..++.+.+... ...+.++..+.+++....++++|++.|+...+... -+...-+.|..
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~-~~~~~~~~l~~ 718 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT-KCPECENSLKL 718 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC-CChhhHHHHHH
Confidence 56667777777787888988888877654 45567888899999999999999999998887643 33344444443
No 385
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=75.33 E-value=42 Score=27.09 Aligned_cols=93 Identities=11% Similarity=0.218 Sum_probs=59.6
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcC-CccCccHHhHH--HHHHHHHhcCChhhHHHHHHHHHh-----cCCCCChh-hH
Q 048737 69 NALDILVKLNDSTHTVQLWDIMVGIG-FNLMPNLIMYN--AVVGLLCNNNDVDNVFRFFDQMVF-----HGAFPDSL-TY 139 (274)
Q Consensus 69 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~-~~ 139 (274)
.++...-+.++.++|.++++++.+.- ..-.|+.+.|. ...+++...||.+++.+.+++..+ .+++|++. .|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 34455566789999999999998631 00246666654 455667788999999999998877 57777654 34
Q ss_pred HHHHHHHH-hcCCHhHHHHHHHHHHh
Q 048737 140 NMIFECLI-KNKKVHEVENFFHEMIK 164 (274)
Q Consensus 140 ~~li~~~~-~~~~~~~a~~~~~~~~~ 164 (274)
..+-.-|. ..|++. .+|.....
T Consensus 160 Y~lssqYyk~~~d~a---~yYr~~L~ 182 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFA---SYYRHALL 182 (380)
T ss_pred HHHHHHHHHHHHhHH---HHHHHHHH
Confidence 44444443 334433 34444443
No 386
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.18 E-value=38 Score=26.56 Aligned_cols=85 Identities=11% Similarity=-0.026 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC---------
Q 048737 154 EVENFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLG--------- 220 (274)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------- 220 (274)
.|...+.+.-..+ +......+...|.. ..++.+|...|...-+.|. +. ..|+ +- .+...|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~-a~~~-~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-GA-ACYN-LG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HH-HHHH-HH-HHHhcCCCchhhhhc
Confidence 5666666655544 22233333333322 2355666666666666554 11 1111 11 222222
Q ss_pred ------CcchHHHHHHHHHhCCCccCHHHHH
Q 048737 221 ------RLSDVRRFAEEMLNRRILIYDVTMQ 245 (274)
Q Consensus 221 ------~~~~a~~~~~~m~~~~~~~~~~~~~ 245 (274)
+...|...+......+.........
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 6667777777777777666555555
No 387
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.05 E-value=38 Score=26.54 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=8.3
Q ss_pred ChhhHHHHHHHHHhcC
Q 048737 79 DSTHTVQLWDIMVGIG 94 (274)
Q Consensus 79 ~~~~a~~~~~~~~~~~ 94 (274)
+..+|..+|+.+.+.|
T Consensus 128 d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 128 DLVKALKYYEKAAKLG 143 (292)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 4455555555555554
No 388
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=74.79 E-value=41 Score=26.79 Aligned_cols=112 Identities=9% Similarity=0.017 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHHhcCCc--cCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 048737 80 STHTVQLWDIMVGIGFN--LMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVEN 157 (274)
Q Consensus 80 ~~~a~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 157 (274)
.+.|.+.|+.....+.+ ...+......+.....+.|+.+.-..+++..... ++...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 46677778877765311 0234445566666677777766655666555543 467777888888888888888888
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCCh--HHHHHHHH
Q 048737 158 FFHEMIKNEWQPTPLNCATAITMLLDADEP--EFAIEIWN 195 (274)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~ 195 (274)
+++.....+..++.. ...++.++...+.. +.+...+.
T Consensus 223 ~l~~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHHH
Confidence 888887754223333 34444444433333 55555543
No 389
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=74.46 E-value=28 Score=30.84 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChH
Q 048737 141 MIFECLIKNKKVHEVENFFHEMIKN--EWQPTPLNCATAITMLLDADEPE 188 (274)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 188 (274)
+++.+|..+|++..+.++++.+... |-+.-...||..++...+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 6677777777777777777776653 21222345666666666666554
No 390
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=73.96 E-value=26 Score=30.73 Aligned_cols=32 Identities=13% Similarity=0.064 Sum_probs=0.0
Q ss_pred hcCCcchHHHHHHHHHhCCCccCHHHHHHHHH
Q 048737 218 NLGRLSDVRRFAEEMLNRRILIYDVTMQKLKK 249 (274)
Q Consensus 218 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 249 (274)
+.|++.+|.+.+-.+.+.+..|...-...|.+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 34777778777777777777776654444444
No 391
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.93 E-value=50 Score=30.58 Aligned_cols=118 Identities=8% Similarity=0.067 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhCC---CCCCcchHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCccHHHHH-
Q 048737 137 LTYNMIFECLIKNKKVHEVENFFHEMIKNE---WQPTPLNCATAITMLLDADEP--EFAIEIWNYILENGILPLEASAN- 210 (274)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~- 210 (274)
.-|..|+..|...|+.++|+++|.+..+.. -..-...+..+++...+.+.. +-+++.-+...+.........+.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 358889999999999999999999987632 111112344466666666554 44544444443322111111111
Q ss_pred -----------HHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhc
Q 048737 211 -----------VLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNE 254 (274)
Q Consensus 211 -----------~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 254 (274)
.-+-.|......+-+...++.+....-.++..-.+.++.-|...
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 12334566778888889999998877777888888888877754
No 392
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=73.71 E-value=19 Score=22.46 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=6.5
Q ss_pred CChHHHHHHHHHHH
Q 048737 185 DEPEFAIEIWNYIL 198 (274)
Q Consensus 185 ~~~~~a~~~~~~~~ 198 (274)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 393
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=72.79 E-value=8.4 Score=32.24 Aligned_cols=102 Identities=13% Similarity=0.097 Sum_probs=71.5
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChh
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDST 81 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 81 (274)
...+.++.|..++.+..+. .|+++..|..-..++.+.+++..|+.=+...++.. |+ ...|..-..++.+.+.+.
T Consensus 15 l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred cccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHH
Confidence 4567889999999998776 88677777777788899999998888777777653 33 333444445566667777
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHh
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCN 113 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (274)
+|...|+.... +.|+..-....++-|-+
T Consensus 90 ~A~~~l~~~~~----l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 90 KALLDLEKVKK----LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHhhh----cCcCcHHHHHHHHHHHH
Confidence 88888877776 45766666655554443
No 394
>PRK14700 recombination factor protein RarA; Provisional
Probab=72.71 E-value=46 Score=26.40 Aligned_cols=90 Identities=11% Similarity=0.060 Sum_probs=56.3
Q ss_pred HHHHHHH---hCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCC-----hhhHHHHHHHHHhcCCCCChhhHH
Q 048737 69 NALDILV---KLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNND-----VDNVFRFFDQMVFHGAFPDSLTYN 140 (274)
Q Consensus 69 ~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~ 140 (274)
.+++++. +-.+.+.|.-++-+|++.| -.|....-..++-++-..|. ...|...++....-|.+--.....
T Consensus 128 d~iSAf~KSiRGSDpDAAlYyLArml~~G--EDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La 205 (300)
T PRK14700 128 EQLSAFHKSVRGTDPDAAIFWLSVMLDNG--VDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLA 205 (300)
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 3445544 4468888999999999988 67777777777777777774 345677777777777643334444
Q ss_pred HHHHHHHhcCCHhHHHHHHH
Q 048737 141 MIFECLIKNKKVHEVENFFH 160 (274)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~~ 160 (274)
...-.++..-+...+...+.
T Consensus 206 ~aviyLA~aPKSNs~y~A~~ 225 (300)
T PRK14700 206 QAAIYLAVAPKSNACYKALA 225 (300)
T ss_pred HHHHHHHcCCCchHHHHHHH
Confidence 44444444444444433333
No 395
>PHA03100 ankyrin repeat protein; Provisional
Probab=72.23 E-value=61 Score=27.60 Aligned_cols=12 Identities=8% Similarity=0.099 Sum_probs=5.0
Q ss_pred HHHHHHhcCCCC
Q 048737 123 FFDQMVFHGAFP 134 (274)
Q Consensus 123 ~~~~~~~~~~~~ 134 (274)
+.+.+.+.|..+
T Consensus 158 iv~~Ll~~g~di 169 (480)
T PHA03100 158 ILKLLIDKGVDI 169 (480)
T ss_pred HHHHHHHCCCCc
Confidence 333444444443
No 396
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=71.97 E-value=47 Score=26.25 Aligned_cols=87 Identities=8% Similarity=0.055 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC-----CCCCCcchHHHH
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN-----EWQPTPLNCATA 177 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l 177 (274)
.-...+......|++..|++++.+..+. .. +-..|+++=.. ..++++.....+.+.+. -...|+..|..+
T Consensus 129 ~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L---~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v 203 (291)
T PF10475_consen 129 QTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHL---SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKV 203 (291)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3344455666778888888877766542 10 11111111111 11223333333333221 115677788888
Q ss_pred HHHHHhcCChHHHHHHH
Q 048737 178 ITMLLDADEPEFAIEIW 194 (274)
Q Consensus 178 ~~~~~~~~~~~~a~~~~ 194 (274)
+.+|...|+...+.+-+
T Consensus 204 ~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 204 QEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHhhhHHHHHHH
Confidence 88888888766655433
No 397
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=71.78 E-value=34 Score=24.51 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=43.4
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchH
Q 048737 161 EMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDV 225 (274)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 225 (274)
.+.+.|++++..-. .++..+...++.-.|.++++.+.+.+..++..|.-.-+..+...|-+.+.
T Consensus 16 ~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 16 LCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 34556766655433 45555555566667899999998887777777766677778888876554
No 398
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.51 E-value=49 Score=26.20 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHH-------Hh-------------------cCCCC
Q 048737 81 THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQM-------VF-------------------HGAFP 134 (274)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~-------------------~~~~~ 134 (274)
.+|.++|.-++... --.++-+.++.++....+..+|...+... +. .+++-
T Consensus 150 ~KA~ELFayLv~hk----gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~ 225 (361)
T COG3947 150 RKALELFAYLVEHK----GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKY 225 (361)
T ss_pred hHHHHHHHHHHHhc----CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccc
Confidence 56788888777643 22345556677777777777776655432 11 11233
Q ss_pred ChhhHHHHHHHHHh-cCCHhHHHHHHHHHHhCCCCCCcc-----------------hHHHHHHHHHhcCChHHHHHHHHH
Q 048737 135 DSLTYNMIFECLIK-NKKVHEVENFFHEMIKNEWQPTPL-----------------NCATAITMLLDADEPEFAIEIWNY 196 (274)
Q Consensus 135 ~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~a~~~~~~ 196 (274)
|..-|-..+..... +-.++++.++...... +.-|+.. +++.....|..+|.+.+|.++.++
T Consensus 226 Dv~e~es~~rqi~~inltide~kelv~~ykg-dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr 304 (361)
T COG3947 226 DVQEYESLARQIEAINLTIDELKELVGQYKG-DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQR 304 (361)
T ss_pred cHHHHHHHhhhhhccccCHHHHHHHHHHhcC-CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44444444443322 2234455555444322 1112111 223345667777777777777777
Q ss_pred HHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 048737 197 ILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEML 233 (274)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 233 (274)
....+ +.+...+-.++..+...|+--.+.+-++.+.
T Consensus 305 ~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 305 ALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 76654 2566667777777777777666666666653
No 399
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.50 E-value=21 Score=22.49 Aligned_cols=23 Identities=22% Similarity=0.026 Sum_probs=14.1
Q ss_pred HHHHHhccCcHHHHHHHHHHHhc
Q 048737 35 FLITLIRGKQVDEALKFLRVMKG 57 (274)
Q Consensus 35 li~~~~~~~~~~~a~~~~~~~~~ 57 (274)
+.......|++++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455566677777766666554
No 400
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=71.07 E-value=21 Score=23.48 Aligned_cols=49 Identities=22% Similarity=0.213 Sum_probs=32.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcch
Q 048737 176 TAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSD 224 (274)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 224 (274)
.++..+...+..-.|.++++.+.+.+..++..|.-..+..+...|-..+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3455555556666688888888777666666666666677777776554
No 401
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=70.87 E-value=18 Score=24.06 Aligned_cols=45 Identities=9% Similarity=0.022 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 048737 211 VLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNES 255 (274)
Q Consensus 211 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 255 (274)
.++..+...+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344445555556666666666666665556555555555555554
No 402
>PRK11619 lytic murein transglycosylase; Provisional
Probab=70.71 E-value=80 Score=28.37 Aligned_cols=181 Identities=8% Similarity=-0.013 Sum_probs=93.1
Q ss_pred chHHHHHHHHHHHhccCCCCch-HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHH
Q 048737 7 NVVEANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQ 85 (274)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~p~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 85 (274)
+.+.|..++..+....++.+.. ...+..++...+..+..++|...+....... .+......-+......++++.+..
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHH
Confidence 3466666666654432332211 1223334333334332445555555443321 234444555555557788888877
Q ss_pred HHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHh------------cCCCCC------hh--------hH
Q 048737 86 LWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF------------HGAFPD------SL--------TY 139 (274)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~~~~~------~~--------~~ 139 (274)
.+..|.... .....-.-=+.+++...|+.++|...|+++.. .|.+++ .. .-
T Consensus 334 ~i~~L~~~~---~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 410 (644)
T PRK11619 334 WLARLPMEA---KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPE 410 (644)
T ss_pred HHHhcCHhh---ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChH
Confidence 777775543 22333344456666667888888888877632 111100 00 00
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 048737 140 NMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWN 195 (274)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (274)
..-+..+...|+...|...+..+... .+......+.....+.|..+.+.....
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 11233445556666777777666653 233444555555556666666655443
No 403
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=70.64 E-value=16 Score=21.39 Aligned_cols=46 Identities=17% Similarity=0.092 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 048737 207 ASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYN 253 (274)
Q Consensus 207 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 253 (274)
..++.++..++.-.-.++++..+.+..+.|. .+..+|..-++.+++
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443 233344443343333
No 404
>PHA03100 ankyrin repeat protein; Provisional
Probab=70.40 E-value=67 Score=27.36 Aligned_cols=144 Identities=9% Similarity=0.032 Sum_probs=64.1
Q ss_pred HHHHHhccCcHHHHHHHHHHHhcCCCCCCHHH--HHHHHHH-----HHhCCChhhHHHHHHHHHhcCCccCcc---HHhH
Q 048737 35 FLITLIRGKQVDEALKFLRVMKGENCFPTLKF--FSNALDI-----LVKLNDSTHTVQLWDIMVGIGFNLMPN---LIMY 104 (274)
Q Consensus 35 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ 104 (274)
.+...++.|+.+-+.. +.+.|..|+... ....+.. ....++. ++.+.+.+.| ..++ ....
T Consensus 38 ~L~~A~~~~~~~ivk~----Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~----~iv~~Ll~~g--a~i~~~d~~g~ 107 (480)
T PHA03100 38 PLYLAKEARNIDVVKI----LLDNGADINSSTKNNSTPLHYLSNIKYNLTDVK----EIVKLLLEYG--ANVNAPDNNGI 107 (480)
T ss_pred hhhhhhccCCHHHHHH----HHHcCCCCCCccccCcCHHHHHHHHHHHhhchH----HHHHHHHHCC--CCCCCCCCCCC
Confidence 4445566777654444 445565554321 1123333 4444544 3445555555 3322 2223
Q ss_pred HHHHHHHH-hcCChhhHHHHHHHHHhcCCCCChhh--HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcch--HHHHHH
Q 048737 105 NAVVGLLC-NNNDVDNVFRFFDQMVFHGAFPDSLT--YNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLN--CATAIT 179 (274)
Q Consensus 105 ~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~ 179 (274)
+.|..+.. ..|+.+- ++.+.+.|..++... -...+...+..|. .-.++.+.+.+.|..++... -.+.+.
T Consensus 108 tpL~~A~~~~~~~~~i----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~ 181 (480)
T PHA03100 108 TPLLYAISKKSNSYSI----VEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLH 181 (480)
T ss_pred chhhHHHhcccChHHH----HHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHH
Confidence 33333332 5555444 444445555443221 1233444455551 12234455556665544321 123445
Q ss_pred HHHhcCChHHHHHHH
Q 048737 180 MLLDADEPEFAIEIW 194 (274)
Q Consensus 180 ~~~~~~~~~~a~~~~ 194 (274)
..+..|+.+-+..++
T Consensus 182 ~A~~~~~~~iv~~Ll 196 (480)
T PHA03100 182 IAVEKGNIDVIKFLL 196 (480)
T ss_pred HHHHhCCHHHHHHHH
Confidence 555666655444443
No 405
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.05 E-value=25 Score=22.18 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=13.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHh
Q 048737 142 IFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
+.......|++++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33445556666666666666543
No 406
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.83 E-value=41 Score=25.85 Aligned_cols=60 Identities=5% Similarity=-0.086 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHh----CCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 048737 138 TYNMIFECLIKNKKVHEVENFFHEMIK----NEW-QPTPLNCATAITMLLDADEPEFAIEIWNYI 197 (274)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (274)
....+...|...|++++|.++|+.+.. .|. .+...+...+..++...|+.+....+.-++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334566677778888888888877642 222 334455666777777788877776655444
No 407
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=69.42 E-value=64 Score=26.72 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=31.9
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChh--hHHHHHHHHHh--cCCHhHHHHHHHHHHh
Q 048737 111 LCNNNDVDNVFRFFDQMVFHGAFPDSL--TYNMIFECLIK--NKKVHEVENFFHEMIK 164 (274)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~~~~~~a~~~~~~~~~ 164 (274)
+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44667777777777777765 444443 34444455443 3456677777776554
No 408
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.09 E-value=45 Score=25.61 Aligned_cols=79 Identities=9% Similarity=0.024 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHh----cCCccCccHHhHHHHHHHHHhcCChhhHHH
Q 048737 47 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVG----IGFNLMPNLIMYNAVVGLLCNNNDVDNVFR 122 (274)
Q Consensus 47 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 122 (274)
.|.+.|..... .+......-.+...|...|++++|.++|+.+.. .|. ..+...+...+..++.+.|+.+..+.
T Consensus 163 ~A~~~f~~~~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW-~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 163 KAYEQFKKYGQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGW-WSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHhcc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45555554443 233444455677788888888888888888752 232 45667778888888888888888777
Q ss_pred HHHHHH
Q 048737 123 FFDQMV 128 (274)
Q Consensus 123 ~~~~~~ 128 (274)
+--++.
T Consensus 240 ~~leLl 245 (247)
T PF11817_consen 240 TSLELL 245 (247)
T ss_pred HHHHHh
Confidence 655543
No 409
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=69.07 E-value=90 Score=28.30 Aligned_cols=246 Identities=13% Similarity=0.029 Sum_probs=0.0
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHh-cCCCCCC-HHHHHHHHHHHHhCCC
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK-GENCFPT-LKFFSNALDILVKLND 79 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~-~~~~~~l~~~~~~~~~ 79 (274)
|...|.+++|++.--.....+.+.+ +...+.+++.-|...- .+.+.+.+..-. ..++.+. ......++..|...++
T Consensus 69 yy~Lgeye~Al~yAL~ag~~F~Vd~-~S~y~etivak~id~y-i~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e 146 (929)
T KOG2062|consen 69 YYYLGEYEDALEYALRAGDDFDVDE-NSDYVETIVAKCIDMY-IETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNE 146 (929)
T ss_pred HHHHHHHHHHHHHHHcCCccccccC-ccchhhHHHHHHHHHH-HHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhH
Q ss_pred hhhHHHHHHHHHhcC------CccCccHHhHHHHHHHHHhcCC-hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 048737 80 STHTVQLWDIMVGIG------FNLMPNLIMYNAVVGLLCNNND-VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKV 152 (274)
Q Consensus 80 ~~~a~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 152 (274)
+..|..+--+..+.+ .+...+....+.++..+....+ .+--.++++.+.+.=.+-...-|..+.++|....+.
T Consensus 147 ~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~ 226 (929)
T KOG2062|consen 147 YKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDA 226 (929)
T ss_pred HHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCH
Q ss_pred hHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH-------------CCCCccHHHHHHHHHHHHhc
Q 048737 153 HEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILE-------------NGILPLEASANVLLVGLRNL 219 (274)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~ 219 (274)
+.+.++++++.+ -|......=|.-.....-..+-+....+... .++-....+.......+.++
T Consensus 227 ~~va~ll~kL~~----e~~~llayQIAFDL~esasQefL~~v~~~l~~d~~~de~p~~kii~ILSGe~tik~~l~FL~~~ 302 (929)
T KOG2062|consen 227 EAVADLLEKLVK----EDDLLLAYQIAFDLYESASQEFLDSVLDRLPADDARDEKPMEKIISILSGEETIKLYLQFLLRH 302 (929)
T ss_pred HHHHHHHHHHHh----cchhhhHHHHHHHHhhccCHHHHHHHHHHcccccccccChHHHHHHHhcCchHHHHHHHHHHHc
Q ss_pred CCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 048737 220 GRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNES 255 (274)
Q Consensus 220 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 255 (274)
+..+ +.+++...+.--..-..+-..+.+++.+.|
T Consensus 303 N~tD--~~iL~~iK~s~r~sv~H~A~~iAN~fMh~G 336 (929)
T KOG2062|consen 303 NNTD--LLILEEIKESVRNSVCHTATLIANAFMHAG 336 (929)
T ss_pred CCch--HHHHHHHHHHHHHhhhhHHHHHHHHHHhcC
No 410
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.05 E-value=66 Score=26.75 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=63.1
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcC-------CccCc
Q 048737 29 VLAYETFLITLIRGKQVDEALKFLRVMKGE--NCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIG-------FNLMP 99 (274)
Q Consensus 29 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~ 99 (274)
...+.-+...|...|+++.|++.|.+.+.. ..+-....|..+|....-.|+|.....+..+..+.- -.+++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 456788899999999999999999986553 112234556677777788899988888887776541 00223
Q ss_pred cHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 048737 100 NLIMYNAVVGLLCNNNDVDNVFRFFDQM 127 (274)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (274)
-...+..+.....+ ++..|...|-..
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 33344444444333 666666665443
No 411
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.61 E-value=30 Score=22.63 Aligned_cols=27 Identities=7% Similarity=0.041 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 208 SANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 208 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
-|..++..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466777777777777777777777766
No 412
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=68.26 E-value=22 Score=20.82 Aligned_cols=52 Identities=10% Similarity=-0.088 Sum_probs=41.8
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 048737 167 WQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNL 219 (274)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (274)
+.|+...++.++..+++..-.+.++..+.+....|. .+..+|---++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 357778899999999999999999999999999885 6677777777776653
No 413
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.12 E-value=1.2e+02 Score=29.26 Aligned_cols=154 Identities=10% Similarity=0.067 Sum_probs=88.9
Q ss_pred CcccccchHHHHHHHHHHHhccC----------------------CCC--ch--HhHHHHHHHHHhccCcHHHHHHHHHH
Q 048737 1 GWEKEGNVVEANKTFGEMVERFE----------------------WNP--EH--VLAYETFLITLIRGKQVDEALKFLRV 54 (274)
Q Consensus 1 a~~~~g~~~~a~~~~~~~~~~~~----------------------~~p--~~--~~~~~~li~~~~~~~~~~~a~~~~~~ 54 (274)
+|...|...+|+..|.+.....| -.| .. ...|...++.+-+.+..+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 37778899999999987654311 111 12 34567778888888888888887777
Q ss_pred HhcCCCCCC----HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhh-----------
Q 048737 55 MKGENCFPT----LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDN----------- 119 (274)
Q Consensus 55 ~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------- 119 (274)
.++. ++++ ..+++.+.+-....|.+-+|...+-+-... ..-......++-..+.+|.++.
T Consensus 1009 AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds----errrdcLRqlvivLfecg~l~~L~~fpfigl~~ 1083 (1480)
T KOG4521|consen 1009 AIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS----ERRRDCLRQLVIVLFECGELEALATFPFIGLEQ 1083 (1480)
T ss_pred HHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH----HHHHHHHHHHHHHHHhccchHHHhhCCccchHH
Confidence 6653 3333 346677788888888887776554322111 1122345556666667766543
Q ss_pred -HHH-HHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 048737 120 -VFR-FFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFF 159 (274)
Q Consensus 120 -a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 159 (274)
... +++..-.....-...-|..|-..+...+++.+|-.++
T Consensus 1084 eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1084 EVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 233 2222222211112334555555567778887765543
No 414
>PRK09462 fur ferric uptake regulator; Provisional
Probab=67.48 E-value=39 Score=23.49 Aligned_cols=64 Identities=13% Similarity=0.122 Sum_probs=39.0
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcch
Q 048737 160 HEMIKNEWQPTPLNCATAITMLLDA-DEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSD 224 (274)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 224 (274)
+.+.+.|.+++..- ..++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-+.+
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~ 70 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 34555666554433 3344444443 4566788888888877766666666666667777776543
No 415
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.12 E-value=40 Score=23.48 Aligned_cols=95 Identities=12% Similarity=0.135 Sum_probs=56.0
Q ss_pred HhcCCCCCCH--HHHHHHHHHHHhCCChhhHHHHHHHHHhcCC---ccCccHHhHHHHHHHHHhcCC-hhhHHHHHHHHH
Q 048737 55 MKGENCFPTL--KFFSNALDILVKLNDSTHTVQLWDIMVGIGF---NLMPNLIMYNAVVGLLCNNND-VDNVFRFFDQMV 128 (274)
Q Consensus 55 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 128 (274)
|.+.+..++. ...+.++.-....+++.....+++.+..... .-..+...|++++.+..+..- .--+..+|.-+.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3434444443 2345666666666777777777766643210 002244567777777765554 444566777777
Q ss_pred hcCCCCChhhHHHHHHHHHhc
Q 048737 129 FHGAFPDSLTYNMIFECLIKN 149 (274)
Q Consensus 129 ~~~~~~~~~~~~~li~~~~~~ 149 (274)
+.+.+++..-|..+|.++.+-
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 666777777777777776553
No 416
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=67.11 E-value=26 Score=30.80 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=0.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHH
Q 048737 183 DADEPEFAIEIWNYILENGILPLEASANVL 212 (274)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (274)
+.+++.+|.+.+-.+...++.|...-...|
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL 536 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLL 536 (566)
T ss_dssp ------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHH
Confidence 347777777777777776666664333333
No 417
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=66.97 E-value=88 Score=27.37 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=26.4
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHh-ccCcHHHHHHHHHHHhc
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLI-RGKQVDEALKFLRVMKG 57 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~ 57 (274)
.|..+.+.++|++-... -|.++..|......+. ..|+.+...+.|+....
T Consensus 92 lg~~~~s~~Vfergv~a---ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~ 142 (577)
T KOG1258|consen 92 LGNAENSVKVFERGVQA---IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKS 142 (577)
T ss_pred hhhHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 45566666666665543 3335555555544433 33555555555555544
No 418
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=66.94 E-value=58 Score=25.29 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=74.2
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh-----hhHHHHHHHHHhcCCccCccHHhH
Q 048737 30 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS-----THTVQLWDIMVGIGFNLMPNLIMY 104 (274)
Q Consensus 30 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~ 104 (274)
...+.++..+.+.+....|..+.+.+... +-=.+....|++........ ......+.+..+. +..... |
T Consensus 83 l~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~l---l~~f~~-~ 156 (258)
T PF07064_consen 83 LFLHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISL---LQEFPE-Y 156 (258)
T ss_pred echHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHH---HHcCcc-h
Confidence 35567888888888888888888887642 22344555555543332211 1222333333321 111111 2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCC-----CcchHHHHH
Q 048737 105 NAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNE-WQP-----TPLNCATAI 178 (274)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~-----~~~~~~~l~ 178 (274)
..++-.|.|.-+...=..+|+.. | ++ ..++.-|.+.|+++.|-.++--+...+ ... +...-..++
T Consensus 157 l~Ivv~C~RKtE~~~W~~LF~~l---g---~P---~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL 227 (258)
T PF07064_consen 157 LEIVVNCARKTEVRYWPYLFDYL---G---SP---RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLL 227 (258)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhc---C---CH---HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Confidence 22222333322222222223221 1 11 145566666777776666665554332 111 122233455
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 048737 179 TMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~ 199 (274)
......++++-+.++.+-+..
T Consensus 228 ~~a~~~~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 228 VMALESGDWDLCFELVRFLKA 248 (258)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 556666667766666666654
No 419
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=66.67 E-value=43 Score=26.64 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048737 156 ENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN 200 (274)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (274)
.++|+.+.+.++.|.-..|.-+.-.+.+.=.+..+..+|+.+...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD 307 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD 307 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC
Confidence 356666667777777777766666666666777777777777653
No 420
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.44 E-value=63 Score=25.54 Aligned_cols=161 Identities=6% Similarity=0.020 Sum_probs=91.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHH-------HHHHHHHHHhCCChhhHHHHHHHHHhc--CCccCccHHhH
Q 048737 34 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKF-------FSNALDILVKLNDSTHTVQLWDIMVGI--GFNLMPNLIMY 104 (274)
Q Consensus 34 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 104 (274)
.+.+-..+.+++++|+..+.+....|+..|..+ ...+...|...|+...-.+......+. .+.-+...-..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 466677888899999999999998887776544 456778888888776555444333221 00012234455
Q ss_pred HHHHHHHHhc-CChhhHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCCHhHHHHHHHHH----HhCCCCCCcchH
Q 048737 105 NAVVGLLCNN-NDVDNVFRFFDQMVFHGAFPD-----SLTYNMIFECLIKNKKVHEVENFFHEM----IKNEWQPTPLNC 174 (274)
Q Consensus 105 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~ 174 (274)
.+|+.-+-.. ..++.-+.+.....+-..+-. ...=.-++..+.+.|.+.+|+.+...+ .+..-+|+..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 5666555443 335555555554433211111 112245777888999999988776554 333445665544
Q ss_pred HHH-HHHHHhcCChHHHHHHH
Q 048737 175 ATA-ITMLLDADEPEFAIEIW 194 (274)
Q Consensus 175 ~~l-~~~~~~~~~~~~a~~~~ 194 (274)
..+ -..|-...++.++..-+
T Consensus 168 hllESKvyh~irnv~KskaSL 188 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASL 188 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHH
Confidence 333 23344444444444333
No 421
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=66.23 E-value=1.1e+02 Score=28.29 Aligned_cols=197 Identities=13% Similarity=0.005 Sum_probs=107.9
Q ss_pred HhccCcHHHHHHHHHHHhcCCCCCCHH-------HHHHHHH-HHHhCCChhhHHHHHHHHHhcC--CccCccHHhHHHHH
Q 048737 39 LIRGKQVDEALKFLRVMKGENCFPTLK-------FFSNALD-ILVKLNDSTHTVQLWDIMVGIG--FNLMPNLIMYNAVV 108 (274)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~l~ 108 (274)
.....++++|..++.++...-..|+.. .++.|-. .....|+++.+.++-+.....= ....+....+.++.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345688999999888876542222211 2333322 2335688899988888777541 00234566777888
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChh---hHHHHH--HHHHhcCCH--hHHHHHHHHHHhC--CCC----CCcchHH
Q 048737 109 GLLCNNNDVDNVFRFFDQMVFHGAFPDSL---TYNMIF--ECLIKNKKV--HEVENFFHEMIKN--EWQ----PTPLNCA 175 (274)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li--~~~~~~~~~--~~a~~~~~~~~~~--~~~----~~~~~~~ 175 (274)
.+..-.|++++|..+..+..+..-.-+.. .|..+. ..+...|+. .+.+..+...... +-+ +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999999988766542222333 233332 335566633 2333333333221 111 1223455
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHHCCCCccHHHH--HHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 176 TAITMLLDA-DEPEFAIEIWNYILENGILPLEASA--NVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 176 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
.+..++.+. +...++..-+.--......|-..-+ ..|+......|+.++|...++++...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 555555552 1222222222222222222222222 36778888999999999999988764
No 422
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.12 E-value=58 Score=25.00 Aligned_cols=118 Identities=15% Similarity=0.100 Sum_probs=73.1
Q ss_pred HHhccCcHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHH-HHHHHHHhcC
Q 048737 38 TLIRGKQVDEALKFLRVMKGENCFPTL-KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYN-AVVGLLCNNN 115 (274)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~ 115 (274)
.|.....++.|+..|.+.+. +.|+. .-|+.-+.++.+..+++.+..--.+.++ +.||.+--. -+..+.....
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq----l~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ----LDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh----cChHHHHHHHHHHHHHHhhc
Confidence 45566778888887777665 44665 4456667777788888888877777776 346654433 3445566777
Q ss_pred ChhhHHHHHHHHHh----cCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 048737 116 DVDNVFRFFDQMVF----HGAFPDSLTYNMIFECLIKNKKVHEVENFFHE 161 (274)
Q Consensus 116 ~~~~a~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (274)
.++.|+..+++... ..+.|-......|..+--..-...+..++...
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 78888888877632 22444455566665554444444444444443
No 423
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=65.65 E-value=19 Score=24.31 Aligned_cols=75 Identities=8% Similarity=0.181 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChhhHHHH
Q 048737 8 VVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHTVQL 86 (274)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 86 (274)
++++.+.|..... +.-.|+-...|-..+..+ ++..++|..|.+.|+... ...|......+-..|++.+|.++
T Consensus 49 Lerc~~~f~~~~~-YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~i 121 (125)
T smart00777 49 LERCIRYFEDDER-YKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEV 121 (125)
T ss_pred HHHHHHHhhhhhh-hcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3445555544433 233343344455555443 336778999999887655 44566777778889999999999
Q ss_pred HHH
Q 048737 87 WDI 89 (274)
Q Consensus 87 ~~~ 89 (274)
|+.
T Consensus 122 y~~ 124 (125)
T smart00777 122 YQL 124 (125)
T ss_pred HHc
Confidence 863
No 424
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=65.37 E-value=72 Score=25.80 Aligned_cols=56 Identities=13% Similarity=0.013 Sum_probs=30.3
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 73 ILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
+..+.|+..+|.+.++.+.+.-. +..-..+...|+.++....-+.+...++.+.-+
T Consensus 284 CARklGrlrEA~K~~RDL~ke~p-l~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKEFP-LLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33456777777777777765420 111122334566666666555555555555443
No 425
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.30 E-value=23 Score=29.84 Aligned_cols=107 Identities=9% Similarity=0.001 Sum_probs=60.5
Q ss_pred HHHHHhccCcHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHh
Q 048737 35 FLITLIRGKQVDEALKFLRVMKGENCFPTLK-FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCN 113 (274)
Q Consensus 35 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (274)
-++-+...+.++.|+.++.+.++. .||-. .|..--.++.+.+++..|..=...+++.. +.-...|-.=..++.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d---P~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD---PTYIKAYVRRGTAVMA 84 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC---chhhheeeeccHHHHh
Confidence 344556667777777777777763 35433 33333466677777777777666666643 1112223333334444
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 048737 114 NNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148 (274)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 148 (274)
.+.+.+|+..|+.... +.|+..-....+.-|-.
T Consensus 85 l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 4556666666665554 45666666666655544
No 426
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=65.18 E-value=1.3e+02 Score=28.87 Aligned_cols=190 Identities=14% Similarity=0.123 Sum_probs=102.7
Q ss_pred hHHHHHHHHHhccC--cHHHHHHHHHHHhcCCCCCC--------------HHHHHHHHH----------HHHhCCChhhH
Q 048737 30 LAYETFLITLIRGK--QVDEALKFLRVMKGENCFPT--------------LKFFSNALD----------ILVKLNDSTHT 83 (274)
Q Consensus 30 ~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~----------~~~~~~~~~~a 83 (274)
.....+|..|.+.+ .++.|+....+.......++ ...|+..+. +-....++.+-
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~SqkDPkEy 870 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALGTYDLDLALLVAQKSQKDPKEY 870 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhcccchHHHHHHHHHhccChHHH
Confidence 45567888898887 77788877777764221121 122322222 22334555666
Q ss_pred HHHHHHHHhcCCccCccH---------HhHHHHHHHHHhcC--ChhhHHHHHHH------HHhcCCCCChhhHH----HH
Q 048737 84 VQLWDIMVGIGFNLMPNL---------IMYNAVVGLLCNNN--DVDNVFRFFDQ------MVFHGAFPDSLTYN----MI 142 (274)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~--~~~~a~~~~~~------~~~~~~~~~~~~~~----~l 142 (274)
+.+++++.+. +++. .-|...+....++| -++++..+.++ .+.. .+|+...+. +.
T Consensus 871 LP~L~el~~m----~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~l-y~~~~e~~k~i~~~y 945 (1265)
T KOG1920|consen 871 LPFLNELKKM----ETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALAL-YKPDSEKQKVIYEAY 945 (1265)
T ss_pred HHHHHHHhhc----hhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhhe-eccCHHHHHHHHHHH
Confidence 6666666532 1221 12333333333344 34444443322 1111 244544443 33
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCc
Q 048737 143 FECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRL 222 (274)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 222 (274)
...+...+.+++|.-.|+..-+ ..-.+.+|...|+|.+|..+-.++....- --..+-..|+.-+...+++
T Consensus 946 a~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~d-e~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 946 ADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKD-ELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHH-HHHHHHHHHHHHHHHcccc
Confidence 4444556667777666655422 12457788888899988888776653211 1112235677788888888
Q ss_pred chHHHHHHHHHh
Q 048737 223 SDVRRFAEEMLN 234 (274)
Q Consensus 223 ~~a~~~~~~m~~ 234 (274)
-+|-++..+...
T Consensus 1016 ~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1016 YEAAKILLEYLS 1027 (1265)
T ss_pred hhHHHHHHHHhc
Confidence 888888777654
No 427
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=64.46 E-value=1.1e+02 Score=27.66 Aligned_cols=208 Identities=13% Similarity=0.043 Sum_probs=101.2
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHHhc---------------------CCCCCCHHHHHHHHHHHHhCCChhhHHHHHH
Q 048737 30 LAYETFLITLIRGKQVDEALKFLRVMKG---------------------ENCFPTLKFFSNALDILVKLNDSTHTVQLWD 88 (274)
Q Consensus 30 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 88 (274)
.+|+.+...++....|++|.+.|..-.. +.++-+....-.+..++.+.|.-++|.+.|-
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 4677777777777777777777754321 1122233334444455555555555544443
Q ss_pred HHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH--------------HHHHHHHHhcCCHhH
Q 048737 89 IMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTY--------------NMIFECLIKNKKVHE 154 (274)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~li~~~~~~~~~~~ 154 (274)
+. + .|. ..+..|...++|.+|.++-++..- |.+.+. -.-|..+.+.|+.-.
T Consensus 877 r~---s---~pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~d 941 (1189)
T KOG2041|consen 877 RR---S---LPK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLD 941 (1189)
T ss_pred hc---c---CcH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchh
Confidence 22 1 121 223445555566666666554321 222221 122344556666666
Q ss_pred HHHHHHHHHhC----CCCCCcc----hHHHH-HHHH----------HhcCChHHHHHHHHHHHHC-------CCCccHHH
Q 048737 155 VENFFHEMIKN----EWQPTPL----NCATA-ITML----------LDADEPEFAIEIWNYILEN-------GILPLEAS 208 (274)
Q Consensus 155 a~~~~~~~~~~----~~~~~~~----~~~~l-~~~~----------~~~~~~~~a~~~~~~~~~~-------~~~~~~~~ 208 (274)
|.+++.+|.+. +.+|-.. ...++ +.-+ -+.|..++|..+++.-.-. +.--....
T Consensus 942 aarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEA 1021 (1189)
T KOG2041|consen 942 AARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEA 1021 (1189)
T ss_pred HHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHH
Confidence 77777777543 3222211 11111 1111 1235555565544332210 01112345
Q ss_pred HHHHHHH--HHhcCCcchHHHHHHHHHhC-CCccCHHHHHHHHHHHH
Q 048737 209 ANVLLVG--LRNLGRLSDVRRFAEEMLNR-RILIYDVTMQKLKKAFY 252 (274)
Q Consensus 209 ~~~l~~~--~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~ 252 (274)
|..+|.+ ....|.++.|...--.+.+. .+-|....|+.+.-+-+
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaac 1068 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAAC 1068 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHh
Confidence 5555544 45568888888765555442 45666777776554433
No 428
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=64.32 E-value=1.3e+02 Score=28.34 Aligned_cols=81 Identities=17% Similarity=0.122 Sum_probs=50.3
Q ss_pred HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHhcCCcchHHHHHH
Q 048737 152 VHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILE-NGILPLEASANVLLVGLRNLGRLSDVRRFAE 230 (274)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 230 (274)
.+.-.+.|.++..---..|..++..-...+...|++..+.+++.++.+ .|-.++...|-.++..+...|-- ....+++
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~ 1290 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVK 1290 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHh
Confidence 344455555554321134556666666667778888888888888776 45567777777777777666644 4444455
Q ss_pred HHH
Q 048737 231 EML 233 (274)
Q Consensus 231 ~m~ 233 (274)
.+.
T Consensus 1291 ~~~ 1293 (1304)
T KOG1114|consen 1291 NWM 1293 (1304)
T ss_pred hhe
Confidence 444
No 429
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=64.32 E-value=55 Score=24.09 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=10.9
Q ss_pred hcCCcchHHHHHHHHHh
Q 048737 218 NLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 218 ~~g~~~~a~~~~~~m~~ 234 (274)
+.|+++.|.++++-|.+
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45667777776666654
No 430
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.32 E-value=66 Score=24.65 Aligned_cols=87 Identities=9% Similarity=0.078 Sum_probs=41.5
Q ss_pred CChhhHHHHHHHHHhc--CCCCChhhHHHHH---HHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHH----HHHHHH--h
Q 048737 115 NDVDNVFRFFDQMVFH--GAFPDSLTYNMIF---ECLIKNKKVHEVENFFHEMIKNEWQPTPLNCAT----AITMLL--D 183 (274)
Q Consensus 115 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~--~ 183 (274)
.++++|+..|++.-+- |-..+...--+++ .--...+++.+|+++|++.....+..+..-|.. +-.++| -
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4555566666554321 1122222222233 223456778889999988876544333332221 111112 2
Q ss_pred cCChHHHHHHHHHHHHCC
Q 048737 184 ADEPEFAIEIWNYILENG 201 (274)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~ 201 (274)
..+.-.+...+++..+..
T Consensus 208 ~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELD 225 (288)
T ss_pred cccHHHHHHHHHHHHhcC
Confidence 244444555566655543
No 431
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=62.79 E-value=1.5e+02 Score=28.73 Aligned_cols=133 Identities=15% Similarity=0.201 Sum_probs=81.7
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHh-------cCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhc----
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMK-------GENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGI---- 93 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 93 (274)
.|+....|..|...+-+.++.++|+..-.... ..+-+-+...|..+...+...++...|...+.+....
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 56677888889999999999998887655432 1111123445556655566666777787777776542
Q ss_pred -CCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-----CC--CCChhhHHHHHHHHHhcCCHhHHHH
Q 048737 94 -GFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH-----GA--FPDSLTYNMIFECLIKNKKVHEVEN 157 (274)
Q Consensus 94 -~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~li~~~~~~~~~~~a~~ 157 (274)
|...||...+++.+-..+...++.+.|.++.+...+. |. -++..++..+.+.+...+++..|..
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALE 1120 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 2223445555565555556667888888888876542 11 1234556666666655555554433
No 432
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.77 E-value=73 Score=24.97 Aligned_cols=123 Identities=8% Similarity=0.126 Sum_probs=55.9
Q ss_pred cCcHHHHHHHHHHHhcC-CCCCC--HHHHHHHHHHHHhCCChhhHHHHHHHHHhc---CCccCccHHhHHHHHHHHHhcC
Q 048737 42 GKQVDEALKFLRVMKGE-NCFPT--LKFFSNALDILVKLNDSTHTVQLWDIMVGI---GFNLMPNLIMYNAVVGLLCNNN 115 (274)
Q Consensus 42 ~~~~~~a~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~ 115 (274)
...+++|+.-|.+..+. |-+.+ -..+-.++....+.+++++....|.++... ...-.-+.-..|++++--....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34666666666666552 22221 123344556666666666666666666431 1000112223455555444444
Q ss_pred ChhhHHHHHHHHHhc-CCCCChh----hHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 116 DVDNVFRFFDQMVFH-GAFPDSL----TYNMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 116 ~~~~a~~~~~~~~~~-~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
+.+--.++|+.-++. .-..|.. |-.-+...|...+.+.+..++++++..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 444444444432211 0001111 223444555555555555555555543
No 433
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.31 E-value=41 Score=21.99 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 455555555566666666666655544
No 434
>PRK09857 putative transposase; Provisional
Probab=62.28 E-value=77 Score=25.15 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccC
Q 048737 174 CATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240 (274)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 240 (274)
+..+++.....++.++..++++.+.+. .++.....-++..-+.+.|..+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 556666666777777777777777654 223333444566666777777788888899988888765
No 435
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=62.20 E-value=1e+02 Score=26.51 Aligned_cols=96 Identities=10% Similarity=0.012 Sum_probs=46.1
Q ss_pred CChhhH-HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHH--hcCChHHHHHHHHHHHH-CCCCccHHHH
Q 048737 134 PDSLTY-NMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLL--DADEPEFAIEIWNYILE-NGILPLEASA 209 (274)
Q Consensus 134 ~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~-~~~~~~~~~~ 209 (274)
|+..++ +.++..+.+.|-.++|...+..+.... +|+...|..+++.=. ..-+...+..+|+.+.. -| .++..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 444333 345555555566666666666655432 334444444443221 11224555555555554 24 344455
Q ss_pred HHHHHHHHhcCCcchHHHHHHHH
Q 048737 210 NVLLVGLRNLGRLSDVRRFAEEM 232 (274)
Q Consensus 210 ~~l~~~~~~~g~~~~a~~~~~~m 232 (274)
-..+.--...|..+.+-.++.+.
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHH
Confidence 55554444555555555544443
No 436
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.04 E-value=75 Score=28.25 Aligned_cols=87 Identities=7% Similarity=0.140 Sum_probs=63.0
Q ss_pred HHhccCcHHHHHHHHHHHhcCCCCCC------HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHH
Q 048737 38 TLIRGKQVDEALKFLRVMKGENCFPT------LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLL 111 (274)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (274)
...+..++..++++|..-... ++.| ......+--+|.+..++|.|.++++++.+.. +.++.+-..+..+.
T Consensus 363 ~~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d---~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 363 KLFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD---RQSPLCQLLMLQSF 438 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc---cccHHHHHHHHHHH
Confidence 345567788888888765542 2333 2245566778888999999999999999865 45566666667778
Q ss_pred HhcCChhhHHHHHHHHH
Q 048737 112 CNNNDVDNVFRFFDQMV 128 (274)
Q Consensus 112 ~~~~~~~~a~~~~~~~~ 128 (274)
...+..++|+......+
T Consensus 439 ~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHhcchHHHHHHHHHHH
Confidence 88899999988877654
No 437
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=61.20 E-value=43 Score=21.78 Aligned_cols=61 Identities=10% Similarity=0.107 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC--hHHHHHHHHHHHHCCC
Q 048737 140 NMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADE--PEFAIEIWNYILENGI 202 (274)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 202 (274)
..++..|...++.++|...+.++... .-.......++..+...++ -+.+..++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 44556677777888877777664221 0111233344444444422 2234455555555554
No 438
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=60.97 E-value=30 Score=19.95 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=25.7
Q ss_pred HhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-----HhCCChhhHHHH
Q 048737 39 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL-----VKLNDSTHTVQL 86 (274)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~ 86 (274)
+...|++=+|.++++.+-...-.+....+..+|... .+.|+.+.|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 445667777777777766533233445555555443 345666655554
No 439
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.63 E-value=97 Score=25.70 Aligned_cols=57 Identities=7% Similarity=0.000 Sum_probs=41.3
Q ss_pred HHHHhccCcHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHH--hCCChhhHHHHHHHHHhc
Q 048737 36 LITLIRGKQVDEALKFLRVMKGENCFPTLK--FFSNALDILV--KLNDSTHTVQLWDIMVGI 93 (274)
Q Consensus 36 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 93 (274)
+..+.+.+++..|.++|+.+..+ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44566889999999999999987 666554 3444444443 467788899888887764
No 440
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=59.89 E-value=1.1e+02 Score=25.93 Aligned_cols=89 Identities=12% Similarity=0.242 Sum_probs=62.1
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHH--------HHhcCChhhHHHHHHHHH
Q 048737 57 GENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGL--------LCNNNDVDNVFRFFDQMV 128 (274)
Q Consensus 57 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~ 128 (274)
...+.||..+.+-+...++..-..+....+|+-..+.+ .|=.+-+..++-. -.+....++++++++.|.
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa---DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp 252 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA---DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMP 252 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCc
Confidence 34588999999999888888888999999999999887 4544444433321 123456788999998886
Q ss_pred hcCCCCChhhHHHHHHHHHh
Q 048737 129 FHGAFPDSLTYNMIFECLIK 148 (274)
Q Consensus 129 ~~~~~~~~~~~~~li~~~~~ 148 (274)
..=-.-|+.-+-.|.+.|+.
T Consensus 253 ~~L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 253 AQLSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred hhcccccchhHHHHHHHHhh
Confidence 54222356666677766654
No 441
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=59.45 E-value=75 Score=24.05 Aligned_cols=95 Identities=8% Similarity=0.045 Sum_probs=51.0
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCC---CHHHH--HHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP---TLKFF--SNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLI 102 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 102 (274)
...-+|.|+--|.-...+.+|-+.|.. ..|+.| |..++ ..-|......|+++.|....+++...- +..|..
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pei--Ld~n~~ 100 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEI--LDTNRE 100 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHH--Hccchh
Confidence 344456666555555555556565543 344444 33333 344566678888888888777765433 333332
Q ss_pred hHHHHHH----HHHhcCChhhHHHHHHH
Q 048737 103 MYNAVVG----LLCNNNDVDNVFRFFDQ 126 (274)
Q Consensus 103 ~~~~l~~----~~~~~~~~~~a~~~~~~ 126 (274)
.+-.|.. -..+.|..++|+++.+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3222221 14455666666666654
No 442
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.12 E-value=9.1 Score=30.67 Aligned_cols=93 Identities=11% Similarity=0.072 Sum_probs=57.8
Q ss_pred hccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccH-HhHHHHHHHHHhcCChh
Q 048737 40 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNL-IMYNAVVGLLCNNNDVD 118 (274)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 118 (274)
...|.++.|++.|...+..+ ++....|..--+++.+.+....|++=++...+.. ||. .-|-.--.+....|+|+
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein----~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN----PDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC----cccccccchhhHHHHHhhchH
Confidence 44567777777777777653 4445555566667777777777777777777643 332 22333233444457777
Q ss_pred hHHHHHHHHHhcCCCCChh
Q 048737 119 NVFRFFDQMVFHGAFPDSL 137 (274)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~ 137 (274)
+|...|....+.+..+...
T Consensus 200 ~aa~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHHHHHhccccHHHH
Confidence 7777777777766544433
No 443
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=58.72 E-value=48 Score=21.55 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHH
Q 048737 105 NAVVGLLCNNNDVDNVFRFFDQMV 128 (274)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~ 128 (274)
..++..|...++.++|...+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 455667777788888888887763
No 444
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.38 E-value=30 Score=19.19 Aligned_cols=30 Identities=10% Similarity=0.099 Sum_probs=15.7
Q ss_pred HHHHHhccCcHHHHHHHHHHHhcCCCCCCHHH
Q 048737 35 FLITLIRGKQVDEALKFLRVMKGENCFPTLKF 66 (274)
Q Consensus 35 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 66 (274)
+.-++.+.|++++|.+..+.+.+ +.|+...
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHH
Confidence 44455666666666666666655 2354433
No 445
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=57.80 E-value=43 Score=21.91 Aligned_cols=36 Identities=11% Similarity=0.034 Sum_probs=16.3
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048737 115 NDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 150 (274)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 150 (274)
+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 334444555555544444444444444444444444
No 446
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=57.71 E-value=74 Score=23.44 Aligned_cols=99 Identities=10% Similarity=0.074 Sum_probs=54.0
Q ss_pred cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCCChhhHHHHHH-HHHhcC--CHhHHHHHHHHHHhCCCCCCcc--
Q 048737 100 NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHG--AFPDSLTYNMIFE-CLIKNK--KVHEVENFFHEMIKNEWQPTPL-- 172 (274)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~-~~~~~~--~~~~a~~~~~~~~~~~~~~~~~-- 172 (274)
+.+.++..+-.....|++++|..-++++.+.= ++.-...|..+.. +++.++ .+-+|.-++.-+.... .|+..
T Consensus 28 ei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~-~ps~~EL 106 (204)
T COG2178 28 EIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGR-LPSPEEL 106 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCC-CCCHHHc
Confidence 44445555555667788888888877764320 1112334555554 455554 3556666666554433 34332
Q ss_pred --hHHHHHHH--------------HHhcCChHHHHHHHHHHHH
Q 048737 173 --NCATAITM--------------LLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 173 --~~~~l~~~--------------~~~~~~~~~a~~~~~~~~~ 199 (274)
.+...+.+ ..+.|+++.|.+.++-|.+
T Consensus 107 ~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 107 GVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 12222222 2356788888888877765
No 447
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=57.30 E-value=59 Score=25.96 Aligned_cols=59 Identities=20% Similarity=0.169 Sum_probs=49.5
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhc
Q 048737 191 IEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNE 254 (274)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 254 (274)
.++|+.+.+.++.|...++..+.-.+.+.=.+.+++.+|+.+... +.-|..|+..|+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsm 321 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSM 321 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHH
Confidence 578888999999999999999888899999999999999998753 34478888888764
No 448
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=57.28 E-value=77 Score=23.49 Aligned_cols=50 Identities=6% Similarity=0.204 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHH-hHHHHHHHHHhcCChh
Q 048737 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLI-MYNAVVGLLCNNNDVD 118 (274)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 118 (274)
..+.+++.|...|+++.|.+.|.-+++.. +.|.. .|..=+..+.+.+...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~---~VDiR~~W~iG~eIL~~~~~~~ 93 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP---EVDIRSLWGIGAEILMRRGEQN 93 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC---CCChHhcchHHHHHHHcCCCcc
Confidence 45667777777888888888887777653 33432 2444444444444333
No 449
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=57.04 E-value=70 Score=22.92 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=23.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcC
Q 048737 57 GENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNN 115 (274)
Q Consensus 57 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (274)
+.|++++..-. .++..+...++.-.|.++++.+.+.+ ...+..|...-++.+...|
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~--~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAE--PQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhC--CCCCcchHHHHHHHHHHCC
Confidence 34444443332 23333333344445555555555554 3334333333344444433
No 450
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=56.82 E-value=99 Score=24.60 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=54.6
Q ss_pred HhHHHHHHHHHHhCCC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHH
Q 048737 152 VHEVENFFHEMIKNEW----QPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRR 227 (274)
Q Consensus 152 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 227 (274)
.+.|.+.|+.....+. ..++.....+.....+.|+.+.-..+++..... ++......++.+++-..+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567777777776422 234445556666666777766555555554432 345667777888877888887788
Q ss_pred HHHHHHhCC-CccCHHHHHHHHHHHH
Q 048737 228 FAEEMLNRR-ILIYDVTMQKLKKAFY 252 (274)
Q Consensus 228 ~~~~m~~~~-~~~~~~~~~~l~~~~~ 252 (274)
+++.....+ +.+. . ...++.++.
T Consensus 223 ~l~~~l~~~~v~~~-d-~~~~~~~~~ 246 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQ-D-IRYVLAGLA 246 (324)
T ss_dssp HHHHHHCTSTS-TT-T-HHHHHHHHH
T ss_pred HHHHHcCCcccccH-H-HHHHHHHHh
Confidence 888877754 4433 3 344444554
No 451
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=56.53 E-value=23 Score=17.30 Aligned_cols=21 Identities=14% Similarity=0.458 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHhcCCCCChhhH
Q 048737 117 VDNVFRFFDQMVFHGAFPDSLTY 139 (274)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~ 139 (274)
++.|..+|++.... .|++.+|
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHH
Confidence 34455555554442 3444444
No 452
>PRK09857 putative transposase; Provisional
Probab=56.11 E-value=1e+02 Score=24.50 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=27.1
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 048737 113 NNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT 170 (274)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 170 (274)
+.++.++..++++.+.+. .++.....-++..-+.+.|.-+++.++..+|...|+.++
T Consensus 218 ~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344444445555444433 222222333444444444544556666666666665443
No 453
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=55.88 E-value=40 Score=22.35 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=20.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048737 107 VVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 150 (274)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 150 (274)
++......+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 34444444445555555555555544444444444444444444
No 454
>PHA00425 DNA packaging protein, small subunit
Probab=55.62 E-value=44 Score=20.30 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 048737 7 NVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 74 (274)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (274)
+.+.|..++..+... .-+++..||++-..+.+++- .-..+.||..+...|..++
T Consensus 14 DTE~a~~mL~DL~dd---ekRtPQLYnAIgKlL~RHkF-----------~isKl~pD~~iLg~la~~l 67 (88)
T PHA00425 14 DTEMAQRMLADLKDD---EKRTPQLYNAIGKLLDRHKF-----------QISKLQPDENILGGLAAAL 67 (88)
T ss_pred hHHHHHHHHHHhcCc---cccChHHHHHHHHHHHHhcc-----------cccccCCcHHHHHHHHHHH
Confidence 345666666666553 33367889987776655431 1133678888776655544
No 455
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=54.52 E-value=39 Score=26.96 Aligned_cols=78 Identities=5% Similarity=-0.005 Sum_probs=57.0
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHH-HHHHHHhCCChhhHHHHHHHHHhcCCccCccHHh
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN-ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIM 103 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 103 (274)
.|.|+..|...+....+.|.+.+...+|.+.... .|.|...|.. .-.-+...++++.+..+|....+.+ +.++..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k-hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N---~~~p~i 178 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK-HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN---SRSPRI 178 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC---CCCchH
Confidence 4668889999888888889999999999998875 3445555533 2334556789999999999998876 444555
Q ss_pred HHH
Q 048737 104 YNA 106 (274)
Q Consensus 104 ~~~ 106 (274)
|-.
T Consensus 179 w~e 181 (435)
T COG5191 179 WIE 181 (435)
T ss_pred HHH
Confidence 543
No 456
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=54.48 E-value=1.5e+02 Score=26.09 Aligned_cols=218 Identities=11% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHH
Q 048737 45 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFF 124 (274)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 124 (274)
.+...++.+.....--.+....+..|++.+ +.=+.+.-.++++++.. . . ...+..++++....|......-+.
T Consensus 291 ~~~l~~L~~~~~~~~~~~~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~--~---~~~r~~~~Dal~~~GT~~a~~~i~ 363 (574)
T smart00638 291 VEVLKHLVQDIASDVQEPAAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-K--K---KKARRIFLDAVAQAGTPPALKFIK 363 (574)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-C--C---HHHHHHHHHHHHhcCCHHHHHHHH
Q ss_pred HHHHhcCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCc-------chHHHHHHHHHhcCC-------hHH
Q 048737 125 DQMVFHGAFP-DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTP-------LNCATAITMLLDADE-------PEF 189 (274)
Q Consensus 125 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~-------~~~ 189 (274)
+.+....+.+ .....-..+-.....-..+-...+++-+......+.. .+|.++++-+|.... -+-
T Consensus 364 ~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~ 443 (574)
T smart00638 364 QWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEEL 443 (574)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHH
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh-HHHHHHHHHHH
Q 048737 190 AIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS-MRDRFDSLERR 268 (274)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~-a~~~~~~~~~~ 268 (274)
...+.+.+.+.--.-+..--...+.++.+.|. ..+...+..........+...-...+.++.+..+. ...+-+.+...
T Consensus 444 ~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i 522 (574)
T smart00638 444 LKYLHELLQQAVSKGDEEEIQLYLKALGNAGH-PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPI 522 (574)
T ss_pred HHHHHHHHHHHHhcCCchheeeHHHhhhccCC-hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Q ss_pred hh
Q 048737 269 WK 270 (274)
Q Consensus 269 ~~ 270 (274)
..
T Consensus 523 ~~ 524 (574)
T smart00638 523 YL 524 (574)
T ss_pred Hc
No 457
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=54.34 E-value=92 Score=26.08 Aligned_cols=62 Identities=19% Similarity=0.142 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048737 67 FSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMV 128 (274)
Q Consensus 67 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (274)
+..|++.+.-.|+.....+..+.+.+.-.+..|...+---+.-+|.-.+++.+|.+.|-..+
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788887777777777765432233433222445667777788999988887654
No 458
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=53.81 E-value=88 Score=23.13 Aligned_cols=56 Identities=9% Similarity=-0.043 Sum_probs=40.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC--------------CccHHHHHHHHHHHHhcCCcchHHHHHHH
Q 048737 176 TAITMLLDADEPEFAIEIWNYILENGI--------------LPLEASANVLLVGLRNLGRLSDVRRFAEE 231 (274)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 231 (274)
+++..|-+.-++.++.++++.|.+..+ .+--...|.....|.+.|..|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 556667777778888888777765433 22235677778889999999999999884
No 459
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.51 E-value=62 Score=21.26 Aligned_cols=81 Identities=12% Similarity=-0.006 Sum_probs=38.3
Q ss_pred cCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHH
Q 048737 42 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVF 121 (274)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 121 (274)
....++|..+.+.+...+. .....-.+-+..+.+.|+++.| +..-... ..||...|-+|. -.+.|--+++.
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~---~~pdL~p~~AL~--a~klGL~~~~e 89 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCH---CYPDLEPWAALC--AWKLGLASALE 89 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS-----GGGHHHHHHH--HHHCT-HHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccC---CCccHHHHHHHH--HHhhccHHHHH
Confidence 3445666666666665542 2222223334445566666666 2222222 256666655543 34556666666
Q ss_pred HHHHHHHhcC
Q 048737 122 RFFDQMVFHG 131 (274)
Q Consensus 122 ~~~~~~~~~~ 131 (274)
..+.++..+|
T Consensus 90 ~~l~rla~~g 99 (116)
T PF09477_consen 90 SRLTRLASSG 99 (116)
T ss_dssp HHHHHHCT-S
T ss_pred HHHHHHHhCC
Confidence 6666665554
No 460
>PRK09687 putative lyase; Provisional
Probab=53.19 E-value=1.1e+02 Score=24.08 Aligned_cols=206 Identities=13% Similarity=0.067 Sum_probs=126.3
Q ss_pred hHhHHHHHHHHHhccCcH----HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh--hHHHHHHHHHhcCCccCccH
Q 048737 28 HVLAYETFLITLIRGKQV----DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST--HTVQLWDIMVGIGFNLMPNL 101 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~ 101 (274)
|+..-...+.++.+.|.. +++...+..+... .++...-...+.++...+.-. .-......+...- ..++.
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~--~D~~~ 142 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITA--FDKST 142 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHh--hCCCH
Confidence 445555566666666653 4566777666432 355555555666655543221 1122333332221 23466
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 048737 102 IMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK-KVHEVENFFHEMIKNEWQPTPLNCATAITM 180 (274)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (274)
.+-...+.++.+.++ +.+...+-.+.+. +|...-...+.++.+.+ +...+...+..+.. .++...-...+.+
T Consensus 143 ~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~a 215 (280)
T PRK09687 143 NVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIG 215 (280)
T ss_pred HHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHH
Confidence 676777888888776 5677777777653 45555566666666653 24466666766664 4677888888999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 048737 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYN 253 (274)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 253 (274)
+++.++.. |...+-+..+.+. .....+.++...|.. +|...+..+.+. .||...-...+.+|.+
T Consensus 216 Lg~~~~~~-av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 216 LALRKDKR-VLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHccCChh-HHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 99998854 5555555555432 234677888888885 688888888765 4577776666666643
No 461
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=53.09 E-value=61 Score=24.74 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=46.4
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcC
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 58 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 58 (274)
.+.|+.+.|.+++.+... ..|.....|..+...--+.|+++.|.+.+++..+.
T Consensus 6 ~~~~D~~aaaely~qal~---lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESGDAEAAAELYNQALE---LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccCChHHHHHHHHHHhh---cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 467889999999999855 48888999999999999999999999999998875
No 462
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=53.03 E-value=46 Score=20.59 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=23.7
Q ss_pred CCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHh
Q 048737 23 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 56 (274)
Q Consensus 23 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 56 (274)
.+.| +...||.+++...+.+...-|..++.+..
T Consensus 11 ~F~p-t~~~yn~yiN~~~~~nkVaPa~n~L~r~V 43 (83)
T PF10963_consen 11 TFNP-TPTAYNKYINEMAMDNKVAPAHNYLMRIV 43 (83)
T ss_pred Eecc-CHHHHHHHHHHhccCCCchHHHHHHHHHc
Confidence 4566 77788888888777777777776666554
No 463
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=52.59 E-value=1.2e+02 Score=24.47 Aligned_cols=134 Identities=8% Similarity=-0.023 Sum_probs=74.2
Q ss_pred CCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhc-CCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHH----hcCCCC
Q 048737 60 CFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGI-GFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMV----FHGAFP 134 (274)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~ 134 (274)
+..|...++.+... +...+++-.+..+...+. | -.--...+-....-|++.||.+.|++.+.+.. ..|.+.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~ki 141 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKI 141 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccch
Confidence 45566666655543 222333333444444432 2 12224566677788999999999998887654 346666
Q ss_pred ChhhHHHHHHH-HHhcCCHhHHHHHHHHHHhCCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048737 135 DSLTYNMIFEC-LIKNKKVHEVENFFHEMIKNEWQPTP----LNCATAITMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 135 ~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (274)
|+..+.+-+.. |....-+.+-++..+.+.+.|-..+. .+|..+ .|....++.+|-.+|-....
T Consensus 142 DVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 142 DVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 76666554443 33333344555555566666543332 133322 23345688888888776654
No 464
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=52.11 E-value=1.3e+02 Score=24.54 Aligned_cols=64 Identities=22% Similarity=0.236 Sum_probs=42.8
Q ss_pred HhHHHHHHHHHHhCCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 048737 152 VHEVENFFHEMIKNEWQPTP----LNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLR 217 (274)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (274)
.+++..+++.++.. .|+. ..|.++++.....|.++.++.+|++.+..|..|-...-..++..+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34666666666653 3443 3566777777777777778888888887777777666666666554
No 465
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=52.09 E-value=1.2e+02 Score=24.06 Aligned_cols=112 Identities=7% Similarity=0.022 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 048737 105 NAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDA 184 (274)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (274)
-.++..+.+.++.......+..+. ....-...++.+...|++.+|++++.+..+.- -+..-|+++=+.-.
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c~~~L~~-- 171 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSCVRHLSS-- 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchHHHHHhH--
Confidence 344555666666666666666654 34445566777889999999999998876531 11112222222111
Q ss_pred CChHHHHHHHHHHHHCC-----CCccHHHHHHHHHHHHhcCCcchHHH
Q 048737 185 DEPEFAIEIWNYILENG-----ILPLEASANVLLVGLRNLGRLSDVRR 227 (274)
Q Consensus 185 ~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~ 227 (274)
++++-.....++.+.. ..-|+..|..++.+|.-.|+...+.+
T Consensus 172 -~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 172 -QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 2222222222222210 13567899999999999997766553
No 466
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.96 E-value=57 Score=20.42 Aligned_cols=11 Identities=0% Similarity=0.147 Sum_probs=4.0
Q ss_pred hhhHHHHHHHH
Q 048737 117 VDNVFRFFDQM 127 (274)
Q Consensus 117 ~~~a~~~~~~~ 127 (274)
.+.|.+++..+
T Consensus 52 ~~~ar~LL~~L 62 (88)
T cd08819 52 ESGARELLKRI 62 (88)
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 467
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=51.89 E-value=2e+02 Score=26.75 Aligned_cols=222 Identities=9% Similarity=0.021 Sum_probs=120.5
Q ss_pred cccchHHHHHHHHHHHhccCCCCc---hH---hHHHHHH-HHHhccCcHHHHHHHHHHHhcC----CCCCCHHHHHHHHH
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPE---HV---LAYETFL-ITLIRGKQVDEALKFLRVMKGE----NCFPTLKFFSNALD 72 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~---~~---~~~~~li-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 72 (274)
-.+++++|..+..++....+ .|. .. ..|+.|- ......|++++|.++.+..... -..+....+..+..
T Consensus 427 s~~r~~ea~~li~~l~~~l~-~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLK-APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HccChHHHHHHHHHHHHHhC-cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 35688899999888766411 110 11 1344433 2345668899999988877653 12234556667778
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCccCcc---HHhHHHHH--HHHHhcCCh--hhHHHHHHHHHhcC--CC----CChhhH
Q 048737 73 ILVKLNDSTHTVQLWDIMVGIGFNLMPN---LIMYNAVV--GLLCNNNDV--DNVFRFFDQMVFHG--AF----PDSLTY 139 (274)
Q Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~--~~~~~~~~~--~~a~~~~~~~~~~~--~~----~~~~~~ 139 (274)
+..-.|++++|..+..+..+.. -.-+ ...|..+. ..+...|+. .+.+..|....... -+ +-..++
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a--~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMA--RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHH--HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 8888899999999888777652 1222 23333333 335556633 33333333332210 01 123445
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCC--CCCCc--ch--HHHHHHHHHhcCChHHHHHHHHHHHHCCC----CccHHHH
Q 048737 140 NMIFECLIKNKKVHEVENFFHEMIKNE--WQPTP--LN--CATAITMLLDADEPEFAIEIWNYILENGI----LPLEASA 209 (274)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~--~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ 209 (274)
..+..++.+ .+.+..-...-.+-| ..|.. .. +..|+......|+.++|...+.++..... .++...-
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 555555555 333332222222211 12222 12 23677888889999999999988876422 2222222
Q ss_pred HHHHHH--HHhcCCcchHHHHHHH
Q 048737 210 NVLLVG--LRNLGRLSDVRRFAEE 231 (274)
Q Consensus 210 ~~l~~~--~~~~g~~~~a~~~~~~ 231 (274)
...+.. -...|+.+++.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 223322 2456777777776655
No 468
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=51.82 E-value=1.2e+02 Score=24.25 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=14.4
Q ss_pred CCCCchHhHHHHHHHH-HhccCc-HHHHHHHHHHHhc
Q 048737 23 EWNPEHVLAYETFLIT-LIRGKQ-VDEALKFLRVMKG 57 (274)
Q Consensus 23 ~~~p~~~~~~~~li~~-~~~~~~-~~~a~~~~~~~~~ 57 (274)
|..| +..+++|.+- +.+.|= ..-|.++|.....
T Consensus 161 Gt~~--~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~ 195 (412)
T KOG2297|consen 161 GTLP--ATVLQSLLNDNLVKEGIALSFAVKLFKEWLV 195 (412)
T ss_pred CCCC--HHHHHHHHHhhHHHHhHHHHHHHHHHHHHHh
Confidence 5444 3344544432 233332 2235566665543
No 469
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=51.47 E-value=1.7e+02 Score=25.73 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=7.0
Q ss_pred CCcchHHHHHHHHHh
Q 048737 169 PTPLNCATAITMLLD 183 (274)
Q Consensus 169 ~~~~~~~~l~~~~~~ 183 (274)
|...+|--+..++.+
T Consensus 409 ~s~~iwle~~~~~l~ 423 (547)
T PF14929_consen 409 PSHPIWLEFVSCFLK 423 (547)
T ss_pred CCchHHHHHHHHHHh
Confidence 444444444444444
No 470
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=51.43 E-value=1.4e+02 Score=24.63 Aligned_cols=124 Identities=10% Similarity=0.077 Sum_probs=79.1
Q ss_pred cccchHHHHHHHHHHHhc---------cCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhc-------CCC-----C-
Q 048737 4 KEGNVVEANKTFGEMVER---------FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-------ENC-----F- 61 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~---------~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~-----~- 61 (274)
....+.++...|...... ....|-.+.++..+...+.+.|+.+.|.+++++..- ..+ .
T Consensus 6 hs~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~ 85 (360)
T PF04910_consen 6 HSKAYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNL 85 (360)
T ss_pred CCHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 344566666666655442 011454566777788888999999888888776531 111 0
Q ss_pred ------------CCHHHHHHH---HHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHH-hcCChhhHHHHHH
Q 048737 62 ------------PTLKFFSNA---LDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLC-NNNDVDNVFRFFD 125 (274)
Q Consensus 62 ------------~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~ 125 (274)
-|...|.++ +..+.+.|.+..|.++-+-+...+ ..-|+.....+|+.|+ +.++++--+++.+
T Consensus 86 ~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLd--p~~DP~g~ll~ID~~ALrs~~y~~Li~~~~ 163 (360)
T PF04910_consen 86 TSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLD--PDEDPLGVLLFIDYYALRSRQYQWLIDFSE 163 (360)
T ss_pred ccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CCCCcchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 123333333 566778888888988888888876 2336666666676654 5677777777777
Q ss_pred HHHh
Q 048737 126 QMVF 129 (274)
Q Consensus 126 ~~~~ 129 (274)
....
T Consensus 164 ~~~~ 167 (360)
T PF04910_consen 164 SPLA 167 (360)
T ss_pred hHhh
Confidence 6554
No 471
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=51.12 E-value=1.5e+02 Score=24.90 Aligned_cols=151 Identities=12% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC--ChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhc---CChhhH
Q 048737 46 DEALKFLRVMKGENCFPTLKFFSNALDILVKLN--DSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNN---NDVDNV 120 (274)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a 120 (274)
++|.+++-.+..-+.+--..+........-... ..+...+++++-.... ..+...+.-+++++.++ .+++.|
T Consensus 192 ~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~---Dk~gD~hYdliSA~hKSvRGSD~dAA 268 (436)
T COG2256 192 EEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARF---DKDGDAHYDLISALHKSVRGSDPDAA 268 (436)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhcc---CCCcchHHHHHHHHHHhhccCCcCHH
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-----HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 048737 121 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKK-----VHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWN 195 (274)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (274)
+-.+-+|.+.|-.|.-..-..++-++..-|. ..-|...++.....|.+-........+-.++-.-.-..+...|+
T Consensus 269 LyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE~~i~LAqavvyLA~aPKSNavY~A~~ 348 (436)
T COG2256 269 LYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSPEARIALAQAVVYLALAPKSNAVYTAIN 348 (436)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCccHHHHHHHH
Q ss_pred HHHH
Q 048737 196 YILE 199 (274)
Q Consensus 196 ~~~~ 199 (274)
....
T Consensus 349 ~A~~ 352 (436)
T COG2256 349 AALA 352 (436)
T ss_pred HHHH
No 472
>PRK09462 fur ferric uptake regulator; Provisional
Probab=50.84 E-value=82 Score=21.87 Aligned_cols=15 Identities=13% Similarity=0.457 Sum_probs=7.0
Q ss_pred hhhHHHHHHHHHhcC
Q 048737 80 STHTVQLWDIMVGIG 94 (274)
Q Consensus 80 ~~~a~~~~~~~~~~~ 94 (274)
.-.|.++++.+.+.+
T Consensus 33 h~sa~eI~~~l~~~~ 47 (148)
T PRK09462 33 HVSAEDLYKRLIDMG 47 (148)
T ss_pred CCCHHHHHHHHHhhC
Confidence 444444444444443
No 473
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=50.78 E-value=1.4e+02 Score=24.71 Aligned_cols=123 Identities=15% Similarity=0.021 Sum_probs=0.0
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhcc------CcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRG------KQVDEALKFLRVMKGENCFPTLKFFSNALDILV 75 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (274)
+.+.+++..|.++|+++.++ ...| ....+...+..+++. -++++|.+.++.+.......-..+.+.-.....
T Consensus 140 l~n~~dy~aA~~~~~~L~~r-~l~~-~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~~~l~ 217 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRR-LLSA-VNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDELEDVI 217 (380)
T ss_pred HHHhcChHHHHHHHHHHHhc-ccCh-hhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHHHHHH
Q ss_pred hCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhc------CChhhHHHHHHHHHh
Q 048737 76 KLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNN------NDVDNVFRFFDQMVF 129 (274)
Q Consensus 76 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~ 129 (274)
+....-.+...-.+..... .-...++..+.+.+... |+++.|...+-+..+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e 274 (380)
T TIGR02710 218 KRNASILPEIIGSRNGRRE---AKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALE 274 (380)
T ss_pred HhHHhhcchhhhccchhhh---hcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 474
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.00 E-value=78 Score=21.36 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHH
Q 048737 119 NVFRFFDQMVFHGAFPD-SLTYNMIFECLIKNKKVHEVENFFHE 161 (274)
Q Consensus 119 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (274)
.+.++|..|...|+--. +..|......+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666554333 44455555566666666666666654
No 475
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.72 E-value=2.1e+02 Score=26.27 Aligned_cols=168 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHhccCcHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHH
Q 048737 36 LITLIRGKQVDEALKFLRVMKGENCFP---TLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLC 112 (274)
Q Consensus 36 i~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (274)
|.-+.+.+.+++|+++.+.... ..| -.......|..+...|+++.|-...-.| +..+..-|--.+..+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m------~gn~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKM------LGNNAAEWELWVFKFA 434 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHH------hcchHHHHHHHHHHhc
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHH
Q 048737 113 NNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIE 192 (274)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 192 (274)
..++......++=.-..+ .+...|..++..+.. .....+++...+ .+++...-.+++++--..=+-.....
T Consensus 435 e~~~l~~Ia~~lPt~~~r---L~p~vYemvLve~L~----~~~~~F~e~i~~--Wp~~Lys~l~iisa~~~q~~q~Se~~ 505 (846)
T KOG2066|consen 435 ELDQLTDIAPYLPTGPPR---LKPLVYEMVLVEFLA----SDVKGFLELIKE--WPGHLYSVLTIISATEPQIKQNSEST 505 (846)
T ss_pred cccccchhhccCCCCCcc---cCchHHHHHHHHHHH----HHHHHHHHHHHh--CChhhhhhhHHHhhcchHHHhhccch
Q ss_pred HHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 193 IWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
.+.+. |+..|...+++++|+.++-...+
T Consensus 506 ~L~e~--------------La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 506 ALLEV--------------LAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred hHHHH--------------HHHHHHHccChHHHHHHHHhccC
No 476
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=49.60 E-value=55 Score=19.56 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=23.1
Q ss_pred hcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 048737 218 NLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNES 255 (274)
Q Consensus 218 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 255 (274)
..|+.+.+.+++++..+.|..|.......+.-+...-|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45667777777777776666666655555555555544
No 477
>PRK10941 hypothetical protein; Provisional
Probab=49.02 E-value=1.3e+02 Score=23.61 Aligned_cols=59 Identities=3% Similarity=-0.085 Sum_probs=33.1
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 68 SNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 68 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
+.+-.+|.+.++++.|.++.+.+.... |.+..-+.--.-.|.+.|.+..|..=++...+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~---P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD---PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344455566666666666666666543 33444444445556666666666665555544
No 478
>PRK10304 ferritin; Provisional
Probab=48.34 E-value=99 Score=22.09 Aligned_cols=106 Identities=8% Similarity=0.018 Sum_probs=58.0
Q ss_pred CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHH
Q 048737 151 KVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAE 230 (274)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 230 (274)
..+.|.++++.+...|..|....... -...+....++|+...+.-. -....++.++..+...+|+... .+++
T Consensus 50 E~~HA~kl~~~i~~rgg~~~~~~i~~------p~~~~~s~~e~~~~~l~~E~-~vt~~i~~l~~~A~~~~D~~t~-~fl~ 121 (165)
T PRK10304 50 EMTHMQRLFDYLTDTGNLPRINTVES------PFAEYSSLDELFQETYKHEQ-LITQKINELAHAAMTNQDYPTF-NFLQ 121 (165)
T ss_pred HHHHHHHHHHHHHHcCCCeeeCCCCC------CccccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCHhHH-HHHH
Confidence 34668888888888776665332110 01234445555655554322 2346778888888888777643 3455
Q ss_pred HHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHH
Q 048737 231 EMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSL 265 (274)
Q Consensus 231 ~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~ 265 (274)
.+++..+. .......++.-....|+. +.-.+++-
T Consensus 122 ~fl~EQve-Ee~~~~~l~~~l~~~~~~g~~~y~~D~~ 157 (165)
T PRK10304 122 WYVSEQHE-EEKLFKSIIDKLSLAGKSGEGLYFIDKE 157 (165)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhCCCcchHHHHhHH
Confidence 55544322 334455566655555543 44444443
No 479
>PHA02798 ankyrin-like protein; Provisional
Probab=48.10 E-value=1.6e+02 Score=25.40 Aligned_cols=155 Identities=11% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCC---HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHH
Q 048737 49 LKFLRVMKGENCFPT---LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFD 125 (274)
Q Consensus 49 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 125 (274)
.++++.+.+.|..++ ..-.+.|..++.....+....++.+.+.+.|.++......-.+.+...+..+.. .-.++.+
T Consensus 51 ~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~-~~~~iv~ 129 (489)
T PHA02798 51 TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYI-NNLEILL 129 (489)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCc-ChHHHHH
Q ss_pred HHHhcCCCCChhhH--HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048737 126 QMVFHGAFPDSLTY--NMIFECLIKNKKVHEVENFFHEMIKNEWQPTPL---NCATAITMLLDADEPEFAIEIWNYILEN 200 (274)
Q Consensus 126 ~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (274)
.+.+.|..++.... .+.+..+.+.+. ..-.++.+.+.+.|..++.. ...+.+..+.+.+-...-.++++.+.+.
T Consensus 130 ~Ll~~Gadvn~~d~~g~tpL~~a~~~~~-~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~ 208 (489)
T PHA02798 130 FMIENGADTTLLDKDGFTMLQVYLQSNH-HIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDN 208 (489)
T ss_pred HHHHcCCCccccCCCCCcHHHHHHHcCC-cchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHC
Q ss_pred CCCcc
Q 048737 201 GILPL 205 (274)
Q Consensus 201 ~~~~~ 205 (274)
|..++
T Consensus 209 Ga~i~ 213 (489)
T PHA02798 209 GFIIN 213 (489)
T ss_pred CCCcc
No 480
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=47.86 E-value=92 Score=21.57 Aligned_cols=68 Identities=6% Similarity=-0.007 Sum_probs=41.3
Q ss_pred CccHHhHHHHHHHHHhcCC---hhhHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 048737 98 MPNLIMYNAVVGLLCNNND---VDNVFRFFDQMVFHGA-FPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (274)
.++..+--.+..++.+..+ ..+.+.+++.+.+... .-......-|.-++.+.++++++.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4555666666666666554 4556677777775221 112233334445677888888888888887764
No 481
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=46.61 E-value=68 Score=20.17 Aligned_cols=59 Identities=7% Similarity=0.119 Sum_probs=38.3
Q ss_pred HHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Q 048737 11 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 79 (274)
Q Consensus 11 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (274)
...+++.+.++ |+-- -...-...+...+.+++.++++.+..+| +.+|..+..++...+.
T Consensus 22 ~~~v~~~L~~~-gvlt-----~~~~~~I~~~~t~~~k~~~Lld~L~~RG----~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 22 LDELLIHLLQK-DILT-----DSMAESIMAKPTSFSQNVALLNLLPKRG----PRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHc-CCCC-----HHHHHHHHcCCCcHHHHHHHHHHHHHhC----hhHHHHHHHHHHhcCh
Confidence 34577777776 5432 2223333345567888999999998887 4567777777765554
No 482
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=46.32 E-value=1.5e+02 Score=23.67 Aligned_cols=82 Identities=10% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHH---HHHHhcCChHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHhcCCcchHHHHHH
Q 048737 155 VENFFHEMIKNEWQPTPLNCATAI---TMLLDADEPEFAIEIWNYILE-NGILPLEASANVLLVGLRNLGRLSDVRRFAE 230 (274)
Q Consensus 155 a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 230 (274)
+..+++.+....-.|.......|| .+|......|....+++.... ...-.....|..+++.....|++.+..-+|+
T Consensus 4 G~~Ll~~~~~~~~~~~~~~VELLI~AH~cf~~~c~meGi~~vl~~~~~~~~~l~~~~~~~llvRLltGi~ry~em~yifd 83 (296)
T PF14649_consen 4 GHKLLELADSSHKSQLSCIVELLIRAHDCFTLSCSMEGIAVVLQAAKSLVNHLAAEGDWSLLVRLLTGIGRYREMTYIFD 83 (296)
T ss_pred HHHHHHHHhccCCCCccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHccCcHHHHHHHHH
Q ss_pred HHHhCC
Q 048737 231 EMLNRR 236 (274)
Q Consensus 231 ~m~~~~ 236 (274)
-+.+.+
T Consensus 84 ~L~~n~ 89 (296)
T PF14649_consen 84 ILIEND 89 (296)
T ss_pred HHHHcC
No 483
>PRK10941 hypothetical protein; Provisional
Probab=46.02 E-value=1.4e+02 Score=23.34 Aligned_cols=80 Identities=8% Similarity=-0.000 Sum_probs=58.3
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCcchHHHHHHH
Q 048737 102 IMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN-EWQPTPLNCATAITM 180 (274)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 180 (274)
...+.+-.+|.+.++++.|+++.+.+.... +.+..-+.--.-.|.+.|.+..|..=++..++. .-.|+.......+..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 346677788999999999999999999853 224555666777799999999999988888764 224444455555544
Q ss_pred HH
Q 048737 181 LL 182 (274)
Q Consensus 181 ~~ 182 (274)
..
T Consensus 261 l~ 262 (269)
T PRK10941 261 IE 262 (269)
T ss_pred Hh
Confidence 43
No 484
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=45.53 E-value=1.9e+02 Score=24.74 Aligned_cols=95 Identities=8% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 048737 139 YNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRN 218 (274)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (274)
...|+.-|...|++.+|...++++- .-.--....+.+++.+.-+.|+-...+.+++..-+.|. .|-+.+-.+|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLg-mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELG-MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhC-CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Q ss_pred cC--------CcchHHHHHHHHHhCCCc
Q 048737 219 LG--------RLSDVRRFAEEMLNRRIL 238 (274)
Q Consensus 219 ~g--------~~~~a~~~~~~m~~~~~~ 238 (274)
.. ++..|.+.|+...+.+..
T Consensus 587 V~dsl~DlsLDvPna~ekf~~~Ve~~~~ 614 (645)
T KOG0403|consen 587 VYDSLPDLSLDVPNAYEKFERYVEECFQ 614 (645)
T ss_pred hhccCcccccCCCcHHHHHHHHHHHHHH
No 485
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=45.34 E-value=1.7e+02 Score=24.06 Aligned_cols=30 Identities=3% Similarity=-0.002 Sum_probs=19.1
Q ss_pred CccHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 048737 98 MPNLIMYNAVVGLLCNNNDVDNVFRFFDQM 127 (274)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (274)
|-.+.++-.+...+.+.|+.+.|.+++++.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345556666666677777776666666654
No 486
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.11 E-value=1.6e+02 Score=25.46 Aligned_cols=141 Identities=15% Similarity=0.034 Sum_probs=0.0
Q ss_pred CcccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHH--------HHHHHH
Q 048737 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF--------FSNALD 72 (274)
Q Consensus 1 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~ 72 (274)
+|.+..++..+.+-.+..... .-+++.+...--+.+--.|++.+|.+++...--...+.-..| +|.|.-
T Consensus 215 ~llq~~~Lk~~krevK~vmn~---a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 215 FLLQTRNLKLAKREVKHVMNI---AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHHHHhhhhhhhh---cCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Q ss_pred HHHhCCChhhHHHHHHHHHh-------cCCccCc----------cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 048737 73 ILVKLNDSTHTVQLWDIMVG-------IGFNLMP----------NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD 135 (274)
Q Consensus 73 ~~~~~~~~~~a~~~~~~~~~-------~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 135 (274)
.+.+.|.+..+..+|....+ .| ++| .........-.|...|++-.|.+.|.+..+. +..+
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g--~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~n 368 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNG--LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRN 368 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhcc--CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcC
Q ss_pred hhhHHHHHHHHH
Q 048737 136 SLTYNMIFECLI 147 (274)
Q Consensus 136 ~~~~~~li~~~~ 147 (274)
+..|-.|..+|.
T Consensus 369 PrlWLRlAEcCi 380 (696)
T KOG2471|consen 369 PRLWLRLAECCI 380 (696)
T ss_pred cHHHHHHHHHHH
No 487
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.10 E-value=1.5e+02 Score=23.32 Aligned_cols=190 Identities=13% Similarity=0.088 Sum_probs=120.3
Q ss_pred ccchHHHHHHHHHHHhccCCCCc-hHhHHHHHHHHHhccCcHHHHHHHHHHHhcC---CCC--CCHHHHHHHHHHHHhCC
Q 048737 5 EGNVVEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGE---NCF--PTLKFFSNALDILVKLN 78 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~--~~~~~~~~l~~~~~~~~ 78 (274)
....++|+.-|.+..+--|-+.. .-.+...+|....+.+++++....+.++... .+. -+....|+++.......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 45788999999988764232221 1235667899999999999999999888642 111 23456778888777777
Q ss_pred ChhhHHHHHHHHHhc---CCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-----------ChhhHHHHHH
Q 048737 79 DSTHTVQLWDIMVGI---GFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP-----------DSLTYNMIFE 144 (274)
Q Consensus 79 ~~~~a~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~ 144 (274)
+.+.-..+|+.-.+. ..+-..---|-..|...|...+.+.+..+++.++..+--.- -...|..=|+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 776666666543321 10001111233567788888889999999988886541111 1356788888
Q ss_pred HHHhcCCHhHHHHHHHHHHhC-CCCCCcchHHHHHH----HHHhcCChHHHHHHH
Q 048737 145 CLIKNKKVHEVENFFHEMIKN-EWQPTPLNCATAIT----MLLDADEPEFAIEIW 194 (274)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~ 194 (274)
.|....+-.+...++++.+.. .--|.+.....+-. ...+.|.+++|-.-|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHH
Confidence 898888888888888877543 22455544443322 234668888775433
No 488
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=44.97 E-value=70 Score=19.41 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=23.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCccHH---HHHHHHHHHHhcCCcchHHHHHHHHHhCCCccC
Q 048737 177 AITMLLDADEPEFAIEIWNYILENGILPLEA---SANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240 (274)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 240 (274)
.+...+..|+.+-+. .+.+.|..++.. .++.+.. .+..|+ .++++.+.+.|..++
T Consensus 29 ~l~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~----~~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 29 ALHYAAENGNLEIVK----LLLENGADINSQDKNGNTALHY-AAENGN----LEIVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHTTTHHHHH----HHHHTTTCTT-BSTTSSBHHHH-HHHTTH----HHHHHHHHHTTT-TT
T ss_pred HHHHHHHcCCHHHHH----HHHHhcccccccCCCCCCHHHH-HHHcCC----HHHHHHHHHcCCCCC
Confidence 444445566644333 333455444432 2233332 233343 334455555555544
No 489
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=43.64 E-value=1.1e+02 Score=21.05 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048737 173 NCATAITMLLDADEPEFAIEIWNYILENGI 202 (274)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 202 (274)
.+..++-.+...|+++.|.++.....+.|.
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 444455555666666666666666666654
No 490
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=43.26 E-value=49 Score=26.43 Aligned_cols=51 Identities=14% Similarity=0.023 Sum_probs=38.9
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhc
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 57 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 57 (274)
+.|+.++|..+|+....- .|+++.....+....-..+++-+|-.+|-+...
T Consensus 128 ~~Gk~ekA~~lfeHAlal---aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALAL---APTNPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred hccchHHHHHHHHHHHhc---CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 568889999999888554 787887777777776677777788887776654
No 491
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=43.07 E-value=2.7e+02 Score=25.64 Aligned_cols=30 Identities=10% Similarity=0.053 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 048737 60 CFPTLKFFSNALDILVKLNDSTHTVQLWDIMV 91 (274)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 91 (274)
+..+......++... .|+...+..+++.+.
T Consensus 193 v~I~deaL~~La~~s--~GD~R~lln~Le~a~ 222 (725)
T PRK13341 193 VDLEPEAEKHLVDVA--NGDARSLLNALELAV 222 (725)
T ss_pred cCCCHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 445555555555433 566666666666554
No 492
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=42.92 E-value=1.4e+02 Score=22.21 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=40.1
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHhHHHHHHHHH
Q 048737 101 LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS-LTYNMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
....+.++..+...|+++.|-++|--+.... ..|. ..|..=+..+.+.+.-....++++.|
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 4567888999999999999999999888753 2342 24555555555555444443444444
No 493
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.79 E-value=3.3e+02 Score=26.58 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=47.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHhcC-----------------------CCCCC-----HHHHHHHHHHHHhCCChhhHHHH
Q 048737 35 FLITLIRGKQVDEALKFLRVMKGE-----------------------NCFPT-----LKFFSNALDILVKLNDSTHTVQL 86 (274)
Q Consensus 35 li~~~~~~~~~~~a~~~~~~~~~~-----------------------~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~ 86 (274)
+..+|...|...+|+..|.+.... |-.|. .+-|..+++.+-+.+..+.+.++
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344577778888888888776532 11111 12244455555555666666555
Q ss_pred HHHHHhcCCccCcc-HHhHHHHHHHHHhcCChhhHHHHHH
Q 048737 87 WDIMVGIGFNLMPN-LIMYNAVVGLLCNNNDVDNVFRFFD 125 (274)
Q Consensus 87 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 125 (274)
-..+++.-.+-.|+ ..+++++.+.....|.+.+|...+-
T Consensus 1006 A~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~ 1045 (1480)
T KOG4521|consen 1006 AVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL 1045 (1480)
T ss_pred HHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH
Confidence 55554431000111 3345555555566666655555443
No 494
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=41.87 E-value=81 Score=21.81 Aligned_cols=33 Identities=12% Similarity=0.332 Sum_probs=19.1
Q ss_pred HhcCCcchHHHHHHHHHhCCCccCHHHHHHHHH
Q 048737 217 RNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKK 249 (274)
Q Consensus 217 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 249 (274)
.+.|-+.+...++++|.+.|+..+..+|+.++.
T Consensus 120 k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 120 KSKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HHcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 344556666666666666666666555555443
No 495
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=41.45 E-value=1.1e+02 Score=20.64 Aligned_cols=80 Identities=10% Similarity=0.012 Sum_probs=40.4
Q ss_pred cchHHHHHHHHHHHhccCCCCchHh-HHHHHHHHHhccCcHHHHHHHHHHHhc-CCCCC-CHHHHHHHHHHHHhCCChhh
Q 048737 6 GNVVEANKTFGEMVERFEWNPEHVL-AYETFLITLIRGKQVDEALKFLRVMKG-ENCFP-TLKFFSNALDILVKLNDSTH 82 (274)
Q Consensus 6 g~~~~a~~~~~~~~~~~~~~p~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~ 82 (274)
.++.+|...+++.... +|.+.. ....+|..+. =.++.+.++++...+ .|+.- +..+-..+++...+.|-++.
T Consensus 3 ~nf~kAl~~L~~a~~~---~~~~~~~~~~g~IqrFE--~t~ELaWK~lK~~L~~~G~~~~~~~spr~~ir~A~~~glI~d 77 (123)
T TIGR01987 3 ESFEQALMQLSDANWF---DLTNDITIIDGAIQKFE--FTFELAWKLMKRYLAQEGINDIGAYSPKDVLKEAFRAGLIGD 77 (123)
T ss_pred HHHHHHHHHHHHHHhc---CccchHHHHHHHHHHhh--hHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHcCCcCC
Confidence 3566666666666543 332322 3444444443 234556666666554 34421 23445666666666666665
Q ss_pred HHHHHHHHH
Q 048737 83 TVQLWDIMV 91 (274)
Q Consensus 83 a~~~~~~~~ 91 (274)
.. .|-.|.
T Consensus 78 ~~-~W~~ml 85 (123)
T TIGR01987 78 ES-LWIAML 85 (123)
T ss_pred HH-HHHHHH
Confidence 44 333333
No 496
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=41.38 E-value=47 Score=20.77 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=32.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhCCChhhH
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKG-ENCFPTLKFFSNALDILVKLNDSTHT 83 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (274)
....+.......|+.+.|..+++.+.+ ++ |+ .+..++.++-..|.-..|
T Consensus 36 ~~e~I~a~~~~~g~~~aa~~Ll~~L~~~r~--~~--wf~~Fl~AL~~~g~~~la 85 (88)
T cd08812 36 DKEQILAEERNKGNIAAAEELLDRLERCDK--PG--WFQAFLDALRRTGNDDLA 85 (88)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHhcc--CC--cHHHHHHHHHHcCCccHH
Confidence 344455555555888889999988886 43 33 356777777777765444
No 497
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=41.11 E-value=2.3e+02 Score=24.16 Aligned_cols=89 Identities=10% Similarity=0.130 Sum_probs=53.3
Q ss_pred CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHH--------HHhcCCcchHHHHHHHHHhCC
Q 048737 165 NEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVG--------LRNLGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~m~~~~ 236 (274)
..+.||..+.+-+...++..-..+-...+|+-..+.+- |=...+-+++-. -.+...-+++.++++.|...-
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD-PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD-PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 45778888777777777777777777777777766542 333333332211 123344667778888776553
Q ss_pred CccCHHHHHHHHHHHHhc
Q 048737 237 ILIYDVTMQKLKKAFYNE 254 (274)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~ 254 (274)
-.-|..-+-+|.+-|+..
T Consensus 256 ~~eDvpDffsLAqyY~~K 273 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYSDK 273 (669)
T ss_pred ccccchhHHHHHHHHhhc
Confidence 333555666666666543
No 498
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=40.90 E-value=1.3e+02 Score=22.61 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHHHhCC
Q 048737 44 QVDEALKFLRVMKGENCF-------PTLKFFSNALDILVKLN 78 (274)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~ 78 (274)
..+.|+.++.+|--..++ -...-|..+..+|.+.|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g 177 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHG 177 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcC
Confidence 356677777776543321 12344555666666655
No 499
>PHA02874 ankyrin repeat protein; Provisional
Probab=40.87 E-value=2.2e+02 Score=23.96 Aligned_cols=105 Identities=10% Similarity=0.103 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCCCChhh--HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHH
Q 048737 122 RFFDQMVFHGAFPDSLT--YNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPL--NCATAITMLLDADEPEFAIEIWNYI 197 (274)
Q Consensus 122 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (274)
++++.+.+.|..++... -.+.+...+..|+.+-+. .+.+.|..++.. .-.+.+...+..|.++-+ +.+
T Consensus 105 ~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~----~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv----~~L 176 (434)
T PHA02874 105 DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIK----MLFEYGADVNIEDDNGCYPIHIAIKHNFFDII----KLL 176 (434)
T ss_pred HHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHH----HHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHH----HHH
Confidence 34555566665554321 123344445667765443 344455444332 112344555667776543 344
Q ss_pred HHCCCCccHHH--HHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 048737 198 LENGILPLEAS--ANVLLVGLRNLGRLSDVRRFAEEMLNRRIL 238 (274)
Q Consensus 198 ~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 238 (274)
.+.|..++... -.+.+...+..|+.+ +++.+.+.|..
T Consensus 177 l~~g~~~n~~~~~g~tpL~~A~~~g~~~----iv~~Ll~~g~~ 215 (434)
T PHA02874 177 LEKGAYANVKDNNGESPLHNAAEYGDYA----CIKLLIDHGNH 215 (434)
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCC
Confidence 45554333211 112333445556644 44555555543
No 500
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=40.84 E-value=2.9e+02 Score=25.31 Aligned_cols=94 Identities=13% Similarity=0.035 Sum_probs=0.0
Q ss_pred CHhHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-------------CCccHHHHHHHHHHH
Q 048737 151 KVHEVENFFHEMIKN-EWQPTPLNCATAITMLLDADEPEFAIEIWNYILENG-------------ILPLEASANVLLVGL 216 (274)
Q Consensus 151 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~~~~l~~~~ 216 (274)
..++....+....+. |+..+......+++.. .|++..+..+++++...| -.++......++.++
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Q ss_pred HhcCCcchHHHHHHHHHhCCCccCHHHHHHH
Q 048737 217 RNLGRLSDVRRFAEEMLNRRILIYDVTMQKL 247 (274)
Q Consensus 217 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 247 (274)
.. ++...++.+++++...|+.+....-..+
T Consensus 257 ~~-~d~~~al~~l~~L~~~G~d~~~~l~~L~ 286 (709)
T PRK08691 257 IN-QDGAALLAKAQEMAACAVGFDNALGELA 286 (709)
T ss_pred Hc-CCHHHHHHHHHHHHHhCCCHHHHHHHHH
Done!