Query 048737
Match_columns 274
No_of_seqs 424 out of 1162
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 22:02:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.2E-38 7.4E-43 262.5 23.4 214 11-253 9-222 (501)
2 4g26_A Pentatricopeptide repea 100.0 4.1E-38 1.4E-42 260.9 24.2 180 1-184 35-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.1E-27 3.9E-32 204.0 28.7 255 4-268 317-579 (597)
4 2xpi_A Anaphase-promoting comp 100.0 1.9E-27 6.5E-32 202.7 27.6 258 1-269 281-546 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 8.3E-23 2.9E-27 165.2 28.7 234 26-267 132-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.2E-22 4E-27 164.4 27.1 256 4-267 45-333 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.1E-21 3.8E-26 161.5 28.9 189 2-199 36-239 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 2.5E-21 8.6E-26 159.4 28.2 255 2-268 70-358 (450)
9 4eqf_A PEX5-related protein; a 99.9 1.8E-21 6.3E-26 156.0 22.6 247 2-257 75-343 (365)
10 3hym_B Cell division cycle pro 99.9 7.8E-21 2.7E-25 149.9 24.9 255 3-267 33-298 (330)
11 1fch_A Peroxisomal targeting s 99.9 5.1E-21 1.8E-25 153.4 23.8 260 2-270 74-361 (368)
12 3cv0_A Peroxisome targeting si 99.9 4.4E-21 1.5E-25 151.1 21.8 259 2-270 31-317 (327)
13 3spa_A Mtrpol, DNA-directed RN 99.9 5.3E-23 1.8E-27 176.9 9.2 152 99-255 125-286 (1134)
14 3ieg_A DNAJ homolog subfamily 99.9 7.1E-19 2.4E-23 140.1 30.0 188 3-199 14-216 (359)
15 3spa_A Mtrpol, DNA-directed RN 99.9 3.8E-22 1.3E-26 171.7 9.8 151 28-185 126-286 (1134)
16 3ieg_A DNAJ homolog subfamily 99.9 1.3E-18 4.6E-23 138.5 29.1 255 2-269 47-336 (359)
17 3hym_B Cell division cycle pro 99.9 5E-19 1.7E-23 139.5 26.0 246 2-257 66-321 (330)
18 1fch_A Peroxisomal targeting s 99.9 3.5E-19 1.2E-23 142.7 23.9 258 3-270 36-316 (368)
19 2gw1_A Mitochondrial precursor 99.8 1.4E-18 4.7E-23 145.2 26.5 88 2-94 16-103 (514)
20 3mkr_A Coatomer subunit epsilo 99.8 2.2E-18 7.4E-23 133.9 24.6 246 4-268 11-264 (291)
21 4eqf_A PEX5-related protein; a 99.8 7.5E-19 2.6E-23 140.8 21.5 235 28-270 64-312 (365)
22 2gw1_A Mitochondrial precursor 99.8 2.2E-18 7.6E-23 143.9 25.2 259 3-269 200-479 (514)
23 3fp2_A TPR repeat-containing p 99.8 5.1E-18 1.7E-22 142.6 25.0 257 2-270 35-409 (537)
24 2pl2_A Hypothetical conserved 99.8 2.7E-18 9.2E-23 127.7 20.4 200 26-233 2-212 (217)
25 2vq2_A PILW, putative fimbrial 99.8 3.4E-17 1.2E-21 121.8 24.1 215 25-246 4-220 (225)
26 3fp2_A TPR repeat-containing p 99.8 4.6E-17 1.6E-21 136.8 26.8 253 6-269 216-492 (537)
27 2ho1_A Type 4 fimbrial biogene 99.8 4E-17 1.4E-21 123.9 23.1 205 25-235 32-238 (252)
28 3cv0_A Peroxisome targeting si 99.8 5.3E-18 1.8E-22 133.4 18.7 223 2-233 65-313 (327)
29 3uq3_A Heat shock protein STI1 99.8 3.1E-17 1.1E-21 124.6 22.3 226 29-268 5-236 (258)
30 3u4t_A TPR repeat-containing p 99.8 6.2E-17 2.1E-21 124.2 22.7 227 2-236 13-251 (272)
31 3mkr_A Coatomer subunit epsilo 99.8 1.4E-16 4.8E-21 123.7 24.3 216 2-235 44-264 (291)
32 1xnf_A Lipoprotein NLPI; TPR, 99.8 8E-17 2.7E-21 123.7 22.8 243 3-257 16-262 (275)
33 2pl2_A Hypothetical conserved 99.8 1.2E-17 4E-22 124.2 17.1 187 2-198 15-212 (217)
34 3uq3_A Heat shock protein STI1 99.8 3.9E-17 1.3E-21 124.1 20.0 216 2-235 15-236 (258)
35 1ouv_A Conserved hypothetical 99.8 2.8E-15 9.4E-20 115.3 30.4 221 28-268 5-251 (273)
36 2h6f_A Protein farnesyltransfe 99.8 2.6E-16 9E-21 126.3 24.1 222 3-235 108-348 (382)
37 2ho1_A Type 4 fimbrial biogene 99.8 2.7E-16 9.2E-21 119.3 23.0 193 2-201 47-239 (252)
38 1b89_A Protein (clathrin heavy 99.8 1.4E-18 4.9E-23 138.9 10.4 217 4-265 15-233 (449)
39 2q7f_A YRRB protein; TPR, prot 99.8 6.7E-17 2.3E-21 121.8 19.1 202 28-236 22-223 (243)
40 2q7f_A YRRB protein; TPR, prot 99.8 1.2E-16 4.2E-21 120.4 20.3 191 2-201 33-223 (243)
41 1ouv_A Conserved hypothetical 99.8 3.1E-15 1.1E-19 115.0 28.1 213 2-236 16-252 (273)
42 2h6f_A Protein farnesyltransfe 99.8 7.4E-16 2.5E-20 123.7 24.1 234 23-265 91-344 (382)
43 2vq2_A PILW, putative fimbrial 99.8 8.9E-16 3E-20 114.1 22.5 194 2-201 18-212 (225)
44 3u4t_A TPR repeat-containing p 99.7 2.3E-15 7.9E-20 115.4 24.3 237 29-269 3-251 (272)
45 2ond_A Cleavage stimulation fa 99.7 4.4E-15 1.5E-19 116.3 25.2 219 9-235 33-270 (308)
46 1b89_A Protein (clathrin heavy 99.7 8.3E-17 2.8E-21 128.8 15.0 217 1-257 41-257 (449)
47 4a1s_A PINS, partner of inscut 99.7 2E-16 6.8E-21 128.6 15.2 267 2-271 58-375 (411)
48 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.1E-15 1.4E-19 114.1 20.6 223 38-268 14-244 (275)
49 4abn_A Tetratricopeptide repea 99.7 1.2E-15 4.2E-20 126.4 18.2 212 8-230 84-316 (474)
50 3sf4_A G-protein-signaling mod 99.7 1.3E-15 4.5E-20 123.3 16.8 266 2-270 19-338 (406)
51 2ond_A Cleavage stimulation fa 99.7 1.8E-13 6E-18 107.1 27.9 235 28-270 7-272 (308)
52 3ro2_A PINS homolog, G-protein 99.7 6.5E-16 2.2E-20 121.6 13.7 267 2-271 15-335 (338)
53 3vtx_A MAMA; tetratricopeptide 99.7 2.9E-14 1E-18 102.8 20.4 167 28-200 4-170 (184)
54 3nf1_A KLC 1, kinesin light ch 99.7 6.7E-15 2.3E-19 114.8 17.9 245 25-270 23-309 (311)
55 3vtx_A MAMA; tetratricopeptide 99.7 4.8E-14 1.6E-18 101.7 20.8 168 62-235 3-170 (184)
56 2xm6_A Protein corresponding t 99.6 6.3E-12 2.2E-16 104.6 32.6 240 5-269 164-433 (490)
57 4g1t_A Interferon-induced prot 99.6 2.3E-13 7.9E-18 112.6 23.5 257 5-270 151-461 (472)
58 4abn_A Tetratricopeptide repea 99.6 3.8E-14 1.3E-18 117.5 18.5 206 44-257 83-308 (474)
59 2xm6_A Protein corresponding t 99.6 8.5E-12 2.9E-16 103.9 32.6 209 5-235 56-288 (490)
60 4gyw_A UDP-N-acetylglucosamine 99.6 6.4E-14 2.2E-18 121.0 19.7 170 23-199 3-173 (723)
61 3as5_A MAMA; tetratricopeptide 99.6 2.5E-13 8.6E-18 97.5 19.5 167 28-200 7-173 (186)
62 3ulq_A Response regulator aspa 99.6 1.7E-13 5.8E-18 110.5 20.3 234 35-271 109-371 (383)
63 3edt_B KLC 2, kinesin light ch 99.6 7.7E-14 2.6E-18 107.1 16.7 232 3-235 12-281 (283)
64 2ooe_A Cleavage stimulation fa 99.6 1.5E-12 5.1E-17 109.5 25.2 219 9-235 255-492 (530)
65 3ulq_A Response regulator aspa 99.6 1.6E-13 5.6E-18 110.6 18.3 230 2-234 113-367 (383)
66 2ooe_A Cleavage stimulation fa 99.6 1.1E-11 3.6E-16 104.3 29.3 77 4-85 24-101 (530)
67 3nf1_A KLC 1, kinesin light ch 99.6 1.5E-13 5.1E-18 107.1 16.9 171 63-235 26-224 (311)
68 3as5_A MAMA; tetratricopeptide 99.6 6.6E-13 2.3E-17 95.3 18.2 166 64-235 8-173 (186)
69 4i17_A Hypothetical protein; T 99.6 1.3E-12 4.5E-17 97.5 20.0 197 26-236 4-210 (228)
70 4a1s_A PINS, partner of inscut 99.5 3.2E-13 1.1E-17 109.7 17.5 242 28-270 47-334 (411)
71 4gyw_A UDP-N-acetylglucosamine 99.5 1.1E-12 3.7E-17 113.3 20.5 166 63-234 8-173 (723)
72 3sf4_A G-protein-signaling mod 99.5 1.3E-13 4.3E-18 111.6 13.9 256 2-257 57-363 (406)
73 1hz4_A MALT regulatory protein 99.5 8.5E-12 2.9E-16 100.1 24.3 266 3-270 25-324 (373)
74 3q15_A PSP28, response regulat 99.5 2.2E-12 7.5E-17 103.8 19.8 238 28-269 100-366 (378)
75 4g1t_A Interferon-induced prot 99.5 1E-11 3.6E-16 102.6 23.8 261 3-268 62-401 (472)
76 3ro2_A PINS homolog, G-protein 99.5 2E-12 6.7E-17 101.6 17.6 242 28-270 4-294 (338)
77 4i17_A Hypothetical protein; T 99.5 7.9E-12 2.7E-16 93.2 20.0 193 61-268 4-209 (228)
78 1xi4_A Clathrin heavy chain; a 99.5 3.9E-11 1.3E-15 107.5 26.1 201 28-255 1104-1328(1630)
79 3edt_B KLC 2, kinesin light ch 99.5 1.3E-12 4.5E-17 100.2 14.5 229 40-269 12-282 (283)
80 3q15_A PSP28, response regulat 99.4 3.1E-11 1.1E-15 97.1 21.0 228 3-234 112-364 (378)
81 3urz_A Uncharacterized protein 99.4 5.9E-12 2E-16 92.7 14.7 154 2-164 14-185 (208)
82 3qky_A Outer membrane assembly 99.4 3E-11 1E-15 92.1 18.6 106 24-130 10-126 (261)
83 1qqe_A Vesicular transport pro 99.4 2.1E-11 7.3E-16 94.5 17.8 201 31-233 39-267 (292)
84 4ga2_A E3 SUMO-protein ligase 99.4 1E-11 3.5E-16 86.4 13.4 142 2-151 7-149 (150)
85 2fo7_A Synthetic consensus TPR 99.4 3.8E-11 1.3E-15 81.2 15.8 129 31-164 3-131 (136)
86 2pzi_A Probable serine/threoni 99.4 4.9E-12 1.7E-16 109.4 13.6 175 4-186 403-583 (681)
87 2pzi_A Probable serine/threoni 99.4 1.3E-11 4.5E-16 106.6 16.2 188 23-221 388-583 (681)
88 2r5s_A Uncharacterized protein 99.4 8.9E-12 3E-16 89.2 12.5 163 31-199 8-172 (176)
89 1xi4_A Clathrin heavy chain; a 99.4 3E-10 1E-14 102.0 24.2 189 2-232 1059-1247(1630)
90 2vsy_A XCC0866; transferase, g 99.4 3.2E-11 1.1E-15 102.2 17.7 154 5-166 2-158 (568)
91 2fo7_A Synthetic consensus TPR 99.4 7.9E-11 2.7E-15 79.6 16.0 127 67-198 4-130 (136)
92 1hz4_A MALT regulatory protein 99.4 5.4E-10 1.9E-14 89.5 23.3 239 31-269 16-283 (373)
93 3urz_A Uncharacterized protein 99.4 1.2E-10 4.1E-15 85.6 17.8 130 107-242 60-191 (208)
94 3qky_A Outer membrane assembly 99.4 2.5E-10 8.4E-15 86.9 20.0 169 62-235 13-224 (261)
95 3rjv_A Putative SEL1 repeat pr 99.4 3.4E-10 1.2E-14 83.5 19.8 178 9-202 3-199 (212)
96 1qqe_A Vesicular transport pro 99.3 4.2E-11 1.4E-15 92.9 15.6 196 2-199 47-268 (292)
97 3mv2_B Coatomer subunit epsilo 99.3 8.3E-10 2.8E-14 84.9 22.1 180 48-235 85-282 (310)
98 3mv2_B Coatomer subunit epsilo 99.3 2.7E-10 9.2E-15 87.6 18.7 239 5-269 26-283 (310)
99 3rjv_A Putative SEL1 repeat pr 99.3 3.9E-10 1.3E-14 83.1 18.9 179 46-238 3-200 (212)
100 3dra_A Protein farnesyltransfe 99.3 2.8E-09 9.7E-14 82.5 23.8 220 7-235 48-287 (306)
101 3e4b_A ALGK; tetratricopeptide 99.3 3E-11 1E-15 99.5 13.1 241 3-266 14-314 (452)
102 2r5s_A Uncharacterized protein 99.3 8.3E-11 2.8E-15 84.1 13.3 160 68-233 10-171 (176)
103 3qou_A Protein YBBN; thioredox 99.3 4.1E-10 1.4E-14 87.0 18.1 166 62-233 115-282 (287)
104 2ifu_A Gamma-SNAP; membrane fu 99.3 4.2E-10 1.4E-14 87.9 18.0 221 4-227 3-253 (307)
105 3e4b_A ALGK; tetratricopeptide 99.3 4.6E-09 1.6E-13 86.4 24.2 193 28-238 175-390 (452)
106 3qou_A Protein YBBN; thioredox 99.3 3.5E-10 1.2E-14 87.5 16.4 167 98-268 114-284 (287)
107 4ga2_A E3 SUMO-protein ligase 99.3 6.3E-11 2.1E-15 82.4 10.9 144 35-185 3-148 (150)
108 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.7E-09 9.3E-14 79.3 20.3 186 28-236 3-214 (225)
109 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.2E-09 7.6E-14 79.8 19.8 175 2-201 14-214 (225)
110 2vsy_A XCC0866; transferase, g 99.2 4.5E-10 1.5E-14 95.2 16.8 155 42-202 2-159 (568)
111 4e6h_A MRNA 3'-END-processing 99.2 2E-09 6.8E-14 92.3 20.7 237 9-252 326-585 (679)
112 4gco_A Protein STI-1; structur 99.2 6.4E-10 2.2E-14 74.8 13.1 104 23-130 7-110 (126)
113 2e2e_A Formate-dependent nitri 99.2 3.5E-10 1.2E-14 80.7 12.2 122 2-130 20-144 (177)
114 1hh8_A P67PHOX, NCF-2, neutrop 99.2 5.1E-09 1.7E-13 76.9 18.6 132 28-166 5-151 (213)
115 2ifu_A Gamma-SNAP; membrane fu 99.2 4.8E-09 1.7E-13 81.8 19.3 213 42-257 4-248 (307)
116 4f3v_A ESX-1 secretion system 99.2 1.1E-09 3.6E-14 83.2 14.0 188 4-201 18-238 (282)
117 3gyz_A Chaperone protein IPGC; 99.2 6.1E-10 2.1E-14 77.3 11.7 105 22-130 29-133 (151)
118 3gw4_A Uncharacterized protein 99.1 1.8E-09 6.2E-14 78.5 13.7 160 2-164 2-175 (203)
119 1p5q_A FKBP52, FK506-binding p 99.1 2.7E-10 9.1E-15 90.1 9.6 148 6-162 127-291 (336)
120 3u3w_A Transcriptional activat 99.1 4.2E-09 1.4E-13 81.5 16.2 171 28-199 74-265 (293)
121 3q7a_A Farnesyltransferase alp 99.1 5.7E-08 2E-12 76.2 22.4 221 6-235 68-331 (349)
122 3dra_A Protein farnesyltransfe 99.1 1.4E-07 4.9E-12 73.0 24.4 224 38-268 42-287 (306)
123 2vgx_A Chaperone SYCD; alterna 99.1 7.4E-10 2.5E-14 76.7 10.4 111 13-130 8-118 (148)
124 1hh8_A P67PHOX, NCF-2, neutrop 99.1 3.6E-08 1.2E-12 72.3 19.3 129 66-202 8-152 (213)
125 2c2l_A CHIP, carboxy terminus 99.1 8.3E-10 2.8E-14 85.1 10.8 196 26-234 1-198 (281)
126 1na0_A Designed protein CTPR3; 99.1 8.7E-09 3E-13 68.4 14.3 113 29-146 9-121 (125)
127 2lni_A Stress-induced-phosphop 99.1 1E-08 3.4E-13 69.0 14.7 121 25-150 12-132 (133)
128 1a17_A Serine/threonine protei 99.1 9.5E-09 3.3E-13 72.1 14.9 131 28-163 12-144 (166)
129 3u3w_A Transcriptional activat 99.1 1E-07 3.5E-12 73.7 21.6 163 108-270 82-268 (293)
130 2vyi_A SGTA protein; chaperone 99.1 8.7E-09 3E-13 69.0 13.5 123 25-152 8-130 (131)
131 2qfc_A PLCR protein; TPR, HTH, 99.0 1.4E-08 4.9E-13 78.6 16.4 170 64-234 75-265 (293)
132 4gco_A Protein STI-1; structur 99.0 3.6E-09 1.2E-13 71.1 11.0 101 2-109 23-123 (126)
133 3gw4_A Uncharacterized protein 99.0 7.8E-09 2.7E-13 75.1 13.7 159 40-199 3-175 (203)
134 4e6h_A MRNA 3'-END-processing 99.0 1.6E-07 5.4E-12 80.6 23.4 235 30-269 303-571 (679)
135 1a17_A Serine/threonine protei 99.0 2.3E-08 7.9E-13 70.1 15.0 127 66-197 15-143 (166)
136 2e2e_A Formate-dependent nitri 99.0 6.1E-09 2.1E-13 74.2 11.6 122 39-165 20-144 (177)
137 2fbn_A 70 kDa peptidylprolyl i 99.0 1.5E-09 5.2E-14 79.0 8.5 142 6-155 18-175 (198)
138 2qfc_A PLCR protein; TPR, HTH, 99.0 8.4E-08 2.9E-12 74.2 18.9 173 99-271 73-269 (293)
139 2xcb_A PCRH, regulatory protei 99.0 9.4E-09 3.2E-13 70.5 12.0 104 23-130 12-115 (142)
140 2kck_A TPR repeat; tetratricop 99.0 1.1E-08 3.7E-13 66.6 11.4 103 25-131 2-107 (112)
141 1na0_A Designed protein CTPR3; 99.0 4E-08 1.4E-12 65.1 14.3 95 66-164 11-105 (125)
142 2c2l_A CHIP, carboxy terminus 99.0 1.6E-09 5.5E-14 83.4 7.9 182 2-199 14-198 (281)
143 2vyi_A SGTA protein; chaperone 99.0 4E-08 1.4E-12 65.7 14.0 120 100-222 11-130 (131)
144 3gyz_A Chaperone protein IPGC; 99.0 3.1E-08 1.1E-12 68.6 13.6 95 66-164 38-132 (151)
145 1p5q_A FKBP52, FK506-binding p 99.0 2.1E-09 7.1E-14 85.0 8.6 151 78-233 127-292 (336)
146 2lni_A Stress-induced-phosphop 99.0 3.6E-08 1.2E-12 66.2 13.8 97 64-164 16-112 (133)
147 3upv_A Heat shock protein STI1 99.0 3.6E-08 1.2E-12 65.9 13.5 99 28-130 3-101 (126)
148 2vgx_A Chaperone SYCD; alterna 98.9 3.3E-08 1.1E-12 68.3 12.7 98 100-199 20-117 (148)
149 1elr_A TPR2A-domain of HOP; HO 98.9 2.4E-08 8.3E-13 66.8 10.5 114 28-144 3-120 (131)
150 4f3v_A ESX-1 secretion system 98.9 2.6E-07 9E-12 70.2 16.9 194 38-242 16-242 (282)
151 3q7a_A Farnesyltransferase alp 98.9 1.9E-06 6.4E-11 67.7 22.1 233 29-268 54-331 (349)
152 1elw_A TPR1-domain of HOP; HOP 98.9 2E-07 7E-12 60.9 14.1 99 28-130 3-101 (118)
153 3sz7_A HSC70 cochaperone (SGT) 98.9 1.4E-07 4.8E-12 66.2 14.0 102 25-130 7-108 (164)
154 2fbn_A 70 kDa peptidylprolyl i 98.8 1E-08 3.4E-13 74.6 8.1 124 101-226 38-176 (198)
155 4gcn_A Protein STI-1; structur 98.8 9.9E-08 3.4E-12 64.0 12.4 63 29-92 8-70 (127)
156 4gcn_A Protein STI-1; structur 98.8 7.7E-08 2.6E-12 64.6 11.6 108 65-177 9-122 (127)
157 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 9.6E-09 3.3E-13 84.7 8.2 140 7-154 249-403 (457)
158 3q49_B STIP1 homology and U bo 98.8 1.3E-07 4.4E-12 64.0 12.4 100 26-129 6-105 (137)
159 2dba_A Smooth muscle cell asso 98.8 3.4E-07 1.2E-11 62.6 14.6 101 25-130 24-128 (148)
160 3dss_A Geranylgeranyl transfer 98.8 4.5E-06 1.5E-10 65.1 22.3 219 5-235 42-304 (331)
161 3upv_A Heat shock protein STI1 98.8 1.8E-07 6E-12 62.5 12.7 95 66-164 6-100 (126)
162 1elw_A TPR1-domain of HOP; HOP 98.8 3.8E-07 1.3E-11 59.6 14.1 96 65-164 5-100 (118)
163 1wao_1 Serine/threonine protei 98.8 3E-08 1E-12 82.1 10.2 117 2-125 16-134 (477)
164 2xcb_A PCRH, regulatory protei 98.8 2E-07 6.7E-12 63.8 12.4 95 66-164 20-114 (142)
165 3q49_B STIP1 homology and U bo 98.7 4.8E-07 1.6E-11 61.1 13.5 98 63-164 8-105 (137)
166 1elr_A TPR2A-domain of HOP; HO 98.7 1.7E-07 5.9E-12 62.5 11.1 97 65-164 5-107 (131)
167 4b4t_Q 26S proteasome regulato 98.7 6.3E-07 2.2E-11 73.0 16.4 198 2-199 14-244 (434)
168 2kck_A TPR repeat; tetratricop 98.7 1.9E-07 6.5E-12 60.5 10.8 94 67-164 9-105 (112)
169 3sz7_A HSC70 cochaperone (SGT) 98.7 5.9E-07 2E-11 63.0 13.3 99 63-165 10-108 (164)
170 1wao_1 Serine/threonine protei 98.7 2.3E-08 8E-13 82.7 6.1 128 28-160 5-134 (477)
171 1hxi_A PEX5, peroxisome target 98.7 9.2E-08 3.1E-12 63.6 7.8 96 31-130 19-114 (121)
172 1hxi_A PEX5, peroxisome target 98.7 2.7E-07 9.3E-12 61.3 10.1 96 66-165 19-114 (121)
173 4b4t_Q 26S proteasome regulato 98.7 2.1E-06 7E-11 70.0 17.1 201 34-234 9-244 (434)
174 2dba_A Smooth muscle cell asso 98.7 1.7E-06 5.7E-11 59.1 14.1 98 63-164 27-127 (148)
175 3ro3_A PINS homolog, G-protein 98.6 3.5E-07 1.2E-11 63.4 10.7 135 29-163 9-156 (164)
176 2uy1_A Cleavage stimulation fa 98.6 3E-05 1E-09 64.4 23.5 247 9-270 65-415 (493)
177 2xev_A YBGF; tetratricopeptide 98.6 8.8E-07 3E-11 59.1 11.7 95 32-130 5-105 (129)
178 3k9i_A BH0479 protein; putativ 98.6 1.9E-07 6.5E-12 61.6 8.0 90 4-94 2-91 (117)
179 3ro3_A PINS homolog, G-protein 98.6 7.1E-07 2.4E-11 61.8 10.8 133 102-234 10-157 (164)
180 2xev_A YBGF; tetratricopeptide 98.6 2.1E-06 7E-11 57.3 12.4 94 68-165 6-105 (129)
181 2uy1_A Cleavage stimulation fa 98.6 1.3E-05 4.5E-10 66.6 19.5 206 8-234 195-412 (493)
182 3dss_A Geranylgeranyl transfer 98.6 3.8E-05 1.3E-09 60.0 20.9 183 8-201 90-305 (331)
183 3rkv_A Putative peptidylprolyl 98.5 2.7E-06 9.3E-11 59.4 12.8 63 101-164 63-125 (162)
184 1ihg_A Cyclophilin 40; ppiase 98.5 9.2E-07 3.2E-11 70.7 11.4 116 2-121 233-361 (370)
185 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 2.8E-06 9.7E-11 69.9 14.4 130 64-198 268-413 (457)
186 3rkv_A Putative peptidylprolyl 98.5 1.6E-06 5.4E-11 60.6 11.2 104 28-136 10-130 (162)
187 2if4_A ATFKBP42; FKBP-like, al 98.5 5.5E-07 1.9E-11 71.1 9.3 149 28-200 178-328 (338)
188 1ihg_A Cyclophilin 40; ppiase 98.5 2.7E-06 9.2E-11 68.0 13.1 122 66-190 225-360 (370)
189 3k9i_A BH0479 protein; putativ 98.5 4.3E-07 1.5E-11 59.8 6.8 86 78-164 4-89 (117)
190 1dce_A Protein (RAB geranylger 98.5 9.1E-06 3.1E-10 68.7 16.2 173 7-188 44-243 (567)
191 2if4_A ATFKBP42; FKBP-like, al 98.5 7.1E-07 2.4E-11 70.5 8.8 138 2-165 189-328 (338)
192 1klx_A Cysteine rich protein B 98.4 1.4E-05 4.9E-10 54.2 13.9 112 5-131 8-127 (138)
193 3n71_A Histone lysine methyltr 98.4 1.4E-06 4.7E-11 72.1 9.9 125 41-165 321-464 (490)
194 1klx_A Cysteine rich protein B 98.4 2.4E-05 8.1E-10 53.1 13.7 111 43-166 9-127 (138)
195 2hr2_A Hypothetical protein; a 98.4 7.9E-06 2.7E-10 56.3 11.0 28 30-57 12-39 (159)
196 1zu2_A Mitochondrial import re 98.3 1.5E-06 5.2E-11 59.8 7.0 87 3-93 13-120 (158)
197 1dce_A Protein (RAB geranylger 98.3 6.1E-05 2.1E-09 63.6 17.8 177 41-224 41-244 (567)
198 2kat_A Uncharacterized protein 98.3 4.7E-06 1.6E-10 54.5 8.4 81 9-93 2-82 (115)
199 3n71_A Histone lysine methyltr 98.3 1.5E-05 5.1E-10 65.9 13.1 127 74-200 319-464 (490)
200 2l6j_A TPR repeat-containing p 98.3 1.3E-06 4.3E-11 56.6 5.5 94 28-125 3-102 (111)
201 1na3_A Designed protein CTPR2; 98.3 1.4E-05 4.8E-10 49.4 10.0 82 28-113 8-89 (91)
202 2hr2_A Hypothetical protein; a 98.3 2.1E-05 7.2E-10 54.2 11.3 95 66-164 13-130 (159)
203 2l6j_A TPR repeat-containing p 98.2 1E-05 3.6E-10 52.1 8.5 64 64-130 4-67 (111)
204 2kat_A Uncharacterized protein 98.1 3.4E-05 1.2E-09 50.3 10.2 77 83-163 4-80 (115)
205 3ma5_A Tetratricopeptide repea 98.1 1.6E-05 5.4E-10 50.6 7.3 68 25-93 3-70 (100)
206 1na3_A Designed protein CTPR2; 98.1 6.6E-05 2.2E-09 46.3 10.0 61 66-129 11-71 (91)
207 1zu2_A Mitochondrial import re 98.0 2E-05 7E-10 54.2 7.7 92 78-175 16-128 (158)
208 3ma5_A Tetratricopeptide repea 97.9 6E-05 2.1E-09 47.8 8.2 64 63-129 6-69 (100)
209 3ly7_A Transcriptional activat 97.8 0.00077 2.6E-08 53.1 13.6 64 135-200 276-339 (372)
210 3ly7_A Transcriptional activat 97.8 0.00067 2.3E-08 53.4 13.0 74 98-175 274-347 (372)
211 3qww_A SET and MYND domain-con 97.6 0.00047 1.6E-08 56.1 10.7 61 102-162 341-408 (433)
212 3qww_A SET and MYND domain-con 97.6 0.00019 6.5E-09 58.4 8.1 87 43-129 312-410 (433)
213 3qwp_A SET and MYND domain-con 97.6 0.0013 4.5E-08 53.5 12.3 93 71-163 294-398 (429)
214 3u64_A Protein TP_0956; tetrat 97.5 0.016 5.3E-07 44.0 16.9 92 117-212 179-283 (301)
215 3mkq_A Coatomer beta'-subunit; 97.5 0.001 3.5E-08 58.6 11.4 46 111-162 662-707 (814)
216 3qwp_A SET and MYND domain-con 97.5 0.0018 6.1E-08 52.7 11.7 92 108-199 294-399 (429)
217 3bee_A Putative YFRE protein; 97.4 0.0027 9.4E-08 39.5 9.9 65 28-93 5-72 (93)
218 2kc7_A BFR218_protein; tetratr 97.4 0.00052 1.8E-08 43.0 6.6 54 73-129 9-63 (99)
219 2kc7_A BFR218_protein; tetratr 97.4 0.00095 3.3E-08 41.7 7.3 53 3-58 11-64 (99)
220 3bee_A Putative YFRE protein; 97.3 0.006 2.1E-07 37.9 10.6 66 62-130 4-72 (93)
221 4h7y_A Dual specificity protei 97.2 0.0056 1.9E-07 41.2 10.1 105 25-133 9-126 (161)
222 1pc2_A Mitochondria fission pr 97.2 0.0047 1.6E-07 42.0 9.9 81 80-164 14-99 (152)
223 3u64_A Protein TP_0956; tetrat 97.1 0.0088 3E-07 45.4 11.4 96 41-142 175-283 (301)
224 3mkq_A Coatomer beta'-subunit; 97.1 0.014 4.7E-07 51.4 14.3 129 33-196 633-761 (814)
225 3mkq_B Coatomer subunit alpha; 97.0 0.042 1.4E-06 38.4 14.7 98 39-159 15-112 (177)
226 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0073 2.5E-07 38.3 8.5 66 29-94 5-76 (104)
227 1pc2_A Mitochondria fission pr 97.0 0.012 4.2E-07 40.0 9.8 84 6-93 12-100 (152)
228 4h7y_A Dual specificity protei 96.9 0.022 7.6E-07 38.4 10.5 107 98-206 10-129 (161)
229 2v5f_A Prolyl 4-hydroxylase su 96.9 0.01 3.5E-07 37.6 8.7 67 63-129 4-74 (104)
230 3mkq_B Coatomer subunit alpha; 96.8 0.067 2.3E-06 37.3 13.6 131 70-232 11-141 (177)
231 1nzn_A CGI-135 protein, fissio 96.6 0.021 7E-07 37.4 8.3 83 78-164 15-102 (126)
232 1wy6_A Hypothetical protein ST 95.6 0.27 9.1E-06 32.6 12.7 67 100-167 90-156 (172)
233 1nzn_A CGI-135 protein, fissio 95.5 0.25 8.6E-06 32.3 9.5 65 62-129 33-102 (126)
234 3lvg_A Clathrin heavy chain 1; 95.1 0.00012 4.1E-09 59.3 -8.5 205 28-255 53-277 (624)
235 4gns_B Protein CSD3, chitin bi 95.1 0.25 8.5E-06 43.0 11.0 124 33-162 252-397 (754)
236 4gns_B Protein CSD3, chitin bi 95.0 0.66 2.2E-05 40.5 13.4 117 6-128 262-398 (754)
237 4fhn_B Nucleoporin NUP120; pro 94.9 2.3 7.8E-05 39.3 17.5 190 70-269 818-1051(1139)
238 2ff4_A Probable regulatory pro 94.9 0.17 5.8E-06 40.5 9.1 72 103-175 173-249 (388)
239 1wy6_A Hypothetical protein ST 94.9 0.5 1.7E-05 31.4 15.3 141 74-238 17-157 (172)
240 4fhn_B Nucleoporin NUP120; pro 94.8 1.8 6.3E-05 40.0 16.7 150 103-254 901-1079(1139)
241 4b4t_P 26S proteasome regulato 94.7 1.4 4.8E-05 35.9 20.3 247 5-254 29-306 (445)
242 2ff4_A Probable regulatory pro 94.5 0.2 6.8E-06 40.1 8.6 70 175-245 175-249 (388)
243 1v54_E Cytochrome C oxidase po 93.9 0.65 2.2E-05 28.9 8.9 31 97-127 41-71 (109)
244 3o48_A Mitochondria fission 1 92.9 0.99 3.4E-05 29.7 8.1 67 98-164 37-106 (134)
245 4b4t_P 26S proteasome regulato 92.7 3.5 0.00012 33.6 19.1 191 43-234 30-246 (445)
246 4b4t_R RPN7, 26S proteasome re 92.7 2.1 7.1E-05 34.7 11.8 98 102-199 132-236 (429)
247 1v54_E Cytochrome C oxidase po 92.7 1.1 3.8E-05 27.9 9.8 63 116-179 25-87 (109)
248 2y69_E Cytochrome C oxidase su 92.6 1.5 5E-05 29.0 8.9 44 120-163 72-115 (152)
249 3ffl_A Anaphase-promoting comp 92.4 0.51 1.7E-05 32.4 6.6 69 23-92 13-91 (167)
250 3lvg_A Clathrin heavy chain 1; 92.4 0.0057 1.9E-07 49.9 -3.5 177 25-218 79-275 (624)
251 4ady_A RPN2, 26S proteasome re 92.2 6.4 0.00022 35.4 19.1 122 109-235 498-623 (963)
252 1zbp_A Hypothetical protein VP 92.0 0.3 1E-05 36.5 5.4 52 3-57 8-59 (273)
253 1zbp_A Hypothetical protein VP 91.9 1.1 3.6E-05 33.6 8.3 117 37-164 5-128 (273)
254 4b4t_R RPN7, 26S proteasome re 91.2 3.1 0.00011 33.7 11.2 100 66-165 133-237 (429)
255 2y69_E Cytochrome C oxidase su 90.9 2.4 8E-05 28.0 9.8 44 83-128 72-115 (152)
256 4ady_A RPN2, 26S proteasome re 90.6 9.4 0.00032 34.4 19.1 181 46-234 471-657 (963)
257 3txn_A 26S proteasome regulato 89.6 6.9 0.00024 31.3 20.7 166 30-198 20-208 (394)
258 3o48_A Mitochondria fission 1 88.5 3.8 0.00013 27.0 9.5 68 61-130 37-107 (134)
259 2ion_A PDCD4, programmed cell 88.3 4.4 0.00015 27.4 8.8 62 138-203 11-77 (152)
260 3esl_A Checkpoint serine/threo 87.7 5.9 0.0002 28.2 8.9 57 77-135 92-149 (202)
261 1k1a_A B-cell lymphoma 3-encod 87.1 3 0.0001 30.2 7.7 186 35-240 12-210 (241)
262 3ffl_A Anaphase-promoting comp 87.0 5.7 0.0002 27.3 8.4 119 104-235 23-151 (167)
263 3kea_A K1L; tropism, ANK repea 86.8 2.8 9.7E-05 31.6 7.6 209 5-242 9-224 (285)
264 2nsz_A Programmed cell death p 86.6 5 0.00017 26.3 10.1 61 138-202 9-74 (129)
265 1wdy_A 2-5A-dependent ribonucl 86.3 4.6 0.00016 29.9 8.6 83 181-269 189-276 (285)
266 3lpz_A GET4 (YOR164C homolog); 86.1 10 0.00036 29.4 18.6 141 111-269 65-217 (336)
267 3esl_A Checkpoint serine/threo 85.5 7.9 0.00027 27.6 9.3 55 115-169 93-148 (202)
268 3txn_A 26S proteasome regulato 84.5 14 0.00048 29.5 18.6 227 2-232 29-281 (394)
269 4a1g_A Mitotic checkpoint seri 84.4 2.6 8.9E-05 28.5 5.5 53 48-102 84-137 (152)
270 1k1a_A B-cell lymphoma 3-encod 84.3 6.3 0.00021 28.4 8.3 16 5-20 19-34 (241)
271 3eiq_C Programmed cell death p 84.1 14 0.00047 29.1 15.3 97 174-271 220-324 (358)
272 2wvi_A Mitotic checkpoint seri 83.5 3.2 0.00011 28.5 5.7 55 47-103 78-133 (164)
273 2uwj_G Type III export protein 82.9 6.5 0.00022 24.4 7.5 8 114-121 52-59 (115)
274 2p58_C Putative type III secre 81.8 7.2 0.00025 24.2 8.3 11 113-123 52-62 (116)
275 2uwj_G Type III export protein 81.5 7.4 0.00025 24.2 7.7 49 74-130 49-97 (115)
276 2zu6_B Programmed cell death p 81.5 16 0.00055 28.0 14.8 97 174-271 169-273 (307)
277 2p58_C Putative type III secre 80.7 8 0.00027 24.0 8.3 78 44-131 22-99 (116)
278 3jxi_A Vanilloid receptor-rela 79.8 2.5 8.4E-05 31.2 4.6 22 73-94 11-32 (260)
279 1y8m_A FIS1; mitochondria, unk 79.7 11 0.00038 25.1 11.6 20 145-164 86-105 (144)
280 3aji_A 26S proteasome non-ATPa 78.5 11 0.00039 26.8 7.9 179 36-240 10-199 (231)
281 3hra_A Ankyrin repeat family p 77.9 3.9 0.00013 28.5 5.1 15 226-240 158-172 (201)
282 1y8m_A FIS1; mitochondria, unk 77.2 14 0.00046 24.7 11.8 67 61-129 36-105 (144)
283 3lxu_X Tripeptidyl-peptidase 2 77.1 50 0.0017 31.2 12.7 79 117-199 1265-1344(1354)
284 4a1g_A Mitotic checkpoint seri 75.5 16 0.00055 24.7 9.2 50 120-169 84-134 (152)
285 4aez_C MAD3, mitotic spindle c 75.4 5.4 0.00018 28.9 5.0 55 46-102 131-186 (223)
286 3eyy_A Putative iron uptake re 74.5 16 0.00056 24.3 7.1 34 222-255 33-66 (145)
287 3hra_A Ankyrin repeat family p 72.7 16 0.00055 25.3 7.2 155 38-205 11-172 (201)
288 1wdy_A 2-5A-dependent ribonucl 72.7 20 0.00068 26.3 8.1 208 34-267 7-240 (285)
289 2xig_A Ferric uptake regulatio 72.6 19 0.00064 24.2 8.4 44 212-255 32-75 (150)
290 2etb_A Transient receptor pote 72.5 8.5 0.00029 28.1 5.9 23 72-94 7-29 (256)
291 2wvi_A Mitotic checkpoint seri 72.3 21 0.0007 24.5 8.9 50 120-169 79-129 (164)
292 2fe3_A Peroxide operon regulat 71.9 19 0.00065 23.9 8.7 43 213-255 28-70 (145)
293 3eu9_A Huntingtin-interacting 71.8 13 0.00045 26.5 6.7 203 38-269 15-233 (240)
294 1mzb_A Ferric uptake regulatio 71.1 19 0.00065 23.6 7.7 61 162-223 9-70 (136)
295 3jxi_A Vanilloid receptor-rela 71.0 4.1 0.00014 29.9 3.8 56 36-91 9-73 (260)
296 2w57_A Ferric uptake regulatio 70.7 21 0.00072 23.9 7.4 38 186-223 32-69 (150)
297 4ets_A Ferric uptake regulatio 70.5 12 0.00041 25.5 5.8 60 56-118 25-86 (162)
298 3eu9_A Huntingtin-interacting 70.4 12 0.00041 26.7 6.2 174 35-231 45-232 (240)
299 4aez_C MAD3, mitotic spindle c 70.2 9.6 0.00033 27.6 5.3 55 80-136 130-185 (223)
300 2wpv_A GET4, UPF0363 protein Y 68.5 38 0.0013 26.0 16.9 70 124-193 80-156 (312)
301 2fu4_A Ferric uptake regulatio 68.0 15 0.00053 21.4 7.2 58 197-255 8-66 (83)
302 3bu8_A Telomeric repeat-bindin 68.0 31 0.0011 24.8 7.4 21 37-57 122-142 (235)
303 2d2s_A Exocyst complex compone 67.4 34 0.0012 25.0 8.7 91 106-199 23-119 (235)
304 3aji_A 26S proteasome non-ATPa 67.0 30 0.001 24.5 7.7 149 71-239 10-165 (231)
305 2pnn_A Transient receptor pote 66.3 14 0.00047 27.3 5.9 20 75-94 21-40 (273)
306 1wgl_A TOLL-interacting protei 65.9 11 0.00037 20.8 3.8 24 40-63 34-57 (59)
307 3ygs_P Procaspase 9; apoptosis 65.3 12 0.00042 22.9 4.5 38 43-84 51-88 (97)
308 2r9g_A AAA ATPase, central reg 64.9 35 0.0012 24.3 8.5 30 32-62 14-46 (204)
309 4ets_A Ferric uptake regulatio 64.8 30 0.001 23.5 7.8 48 176-223 37-86 (162)
310 3bge_A Predicted ATPase; struc 64.7 35 0.0012 24.2 9.1 63 32-94 7-77 (201)
311 2o03_A Probable zinc uptake re 64.3 24 0.00081 23.0 6.0 44 178-221 17-60 (131)
312 2rfa_A Transient receptor pote 62.6 38 0.0013 24.0 7.8 20 217-236 162-181 (232)
313 3ctd_A Putative ATPase, AAA fa 61.9 41 0.0014 24.1 8.6 33 31-63 34-69 (213)
314 1ug3_A EIF4GI, eukaryotic prot 61.5 55 0.0019 25.4 10.4 19 2-20 21-39 (339)
315 3mwm_A ZUR, putative metal upt 61.1 21 0.00073 23.5 5.4 42 214-255 21-62 (139)
316 3eiq_C Programmed cell death p 60.9 59 0.002 25.6 12.1 76 138-214 219-296 (358)
317 2wpv_A GET4, UPF0363 protein Y 60.9 55 0.0019 25.2 17.6 18 181-198 198-215 (312)
318 3eyy_A Putative iron uptake re 60.4 34 0.0012 22.7 7.0 15 80-94 33-47 (145)
319 2b7e_A PRE-mRNA processing pro 60.2 11 0.00037 20.8 3.0 29 118-146 3-31 (59)
320 2dod_A Transcription elongatio 59.8 13 0.00044 22.1 3.6 37 7-45 15-51 (82)
321 2fe3_A Peroxide operon regulat 58.7 37 0.0013 22.5 8.0 38 56-94 14-51 (145)
322 3kea_A K1L; tropism, ANK repea 58.2 55 0.0019 24.3 8.6 154 35-208 65-225 (285)
323 1qsa_A Protein (soluble lytic 57.4 92 0.0031 26.7 22.8 117 7-128 229-346 (618)
324 3kae_A CDC27, possible protein 56.6 47 0.0016 23.1 7.1 53 145-197 71-140 (242)
325 2d2s_A Exocyst complex compone 56.3 56 0.0019 23.9 8.7 22 35-56 24-45 (235)
326 1mzb_A Ferric uptake regulatio 56.1 39 0.0013 22.0 7.2 38 56-94 10-48 (136)
327 3t8k_A Uncharacterized protein 56.0 47 0.0016 22.9 9.5 64 70-135 41-108 (186)
328 1uzc_A Hypothetical protein FL 55.9 17 0.00057 20.9 3.6 36 7-44 13-48 (71)
329 2w57_A Ferric uptake regulatio 55.6 43 0.0015 22.3 7.0 14 80-93 33-46 (150)
330 2ijq_A Hypothetical protein; s 55.3 47 0.0016 22.7 7.8 60 32-92 36-103 (161)
331 2rg8_A Programmed cell death p 55.3 47 0.0016 22.7 6.9 62 138-202 12-75 (165)
332 2f6m_A Suppressor protein STP2 54.0 27 0.00094 19.6 4.7 56 208-264 4-59 (65)
333 3l6a_A Eukaryotic translation 53.1 82 0.0028 24.8 8.4 75 137-215 13-92 (364)
334 1qsa_A Protein (soluble lytic 50.1 1.2E+02 0.0042 25.9 21.8 112 151-266 229-346 (618)
335 2ijq_A Hypothetical protein; s 49.7 59 0.002 22.2 8.0 50 115-164 46-103 (161)
336 3kae_A CDC27, possible protein 49.5 64 0.0022 22.5 8.4 86 38-129 42-142 (242)
337 1bd8_A P19INK4D CDK4/6 inhibit 49.4 23 0.00078 23.2 4.2 17 38-54 8-24 (156)
338 4gq2_M Nucleoporin NUP120; bet 49.3 1.5E+02 0.0053 26.9 10.6 108 142-255 816-950 (950)
339 4b4t_S RPN3, 26S proteasome re 49.2 1.2E+02 0.004 25.4 10.8 66 64-130 231-299 (523)
340 1ug3_A EIF4GI, eukaryotic prot 48.8 23 0.00079 27.6 4.5 128 138-269 13-151 (339)
341 2p1h_A APAF-1, apoptotic prote 48.2 42 0.0014 20.2 4.8 63 11-83 24-86 (94)
342 3t8k_A Uncharacterized protein 48.1 65 0.0022 22.2 8.6 64 108-171 42-109 (186)
343 3b7b_A Euchromatic histone-lys 47.7 27 0.00094 24.8 4.7 14 178-191 148-161 (237)
344 2r9g_A AAA ATPase, central reg 47.6 73 0.0025 22.6 9.1 54 113-167 26-84 (204)
345 3pvs_A Replication-associated 47.3 1.1E+02 0.0039 24.8 13.1 29 62-92 192-220 (447)
346 2o03_A Probable zinc uptake re 47.0 47 0.0016 21.5 5.3 41 110-150 19-59 (131)
347 3twr_A Tankyrase-2; ankyrin re 46.9 59 0.002 21.4 6.2 7 182-188 116-122 (165)
348 4g8k_A 2-5A-dependent ribonucl 46.7 93 0.0032 23.6 8.4 143 110-269 174-324 (337)
349 3ljn_A Hypothetical protein; a 46.6 43 0.0015 25.9 5.9 216 28-268 17-266 (364)
350 3mwm_A ZUR, putative metal upt 46.5 46 0.0016 21.9 5.2 44 107-150 19-62 (139)
351 1bpo_A Protein (clathrin); cla 46.0 1.2E+02 0.0043 24.9 10.6 109 43-158 343-451 (494)
352 3ltm_A Alpha-REP4; protein eng 45.8 73 0.0025 22.1 18.0 171 62-254 31-201 (211)
353 3bu8_A Telomeric repeat-bindin 44.3 87 0.003 22.6 7.3 49 152-200 88-143 (235)
354 2keb_A DNA polymerase subunit 43.5 56 0.0019 20.1 7.3 56 190-247 28-88 (101)
355 2rfa_A Transient receptor pote 42.5 87 0.003 22.0 8.9 56 145-204 127-184 (232)
356 2xig_A Ferric uptake regulatio 41.5 76 0.0026 21.1 8.0 38 113-150 38-75 (150)
357 4b4t_S RPN3, 26S proteasome re 40.8 1.6E+02 0.0055 24.6 12.8 65 136-200 231-299 (523)
358 2zu6_B Programmed cell death p 40.2 1.2E+02 0.0042 23.2 11.2 92 138-233 168-268 (307)
359 4gq2_M Nucleoporin NUP120; bet 38.5 2.3E+02 0.0078 25.8 12.6 131 70-220 816-950 (950)
360 2qq8_A TBC1 domain family memb 38.2 60 0.002 25.1 5.4 44 158-201 215-258 (334)
361 2fu4_A Ferric uptake regulatio 37.9 58 0.002 18.7 6.9 11 82-92 35-45 (83)
362 3qil_A Clathrin heavy chain 1; 37.4 48 0.0016 21.4 3.8 51 32-85 35-85 (125)
363 3lpz_A GET4 (YOR164C homolog); 36.5 1.5E+02 0.0051 23.1 25.5 24 30-53 36-59 (336)
364 2ion_A PDCD4, programmed cell 35.8 98 0.0034 20.7 9.0 22 69-90 14-35 (152)
365 3f3f_C Nucleoporin NUP85; stru 35.8 1.8E+02 0.0062 24.5 8.0 51 103-155 518-568 (570)
366 2rg8_A Programmed cell death p 35.5 24 0.00082 24.2 2.5 27 103-129 12-38 (165)
367 3d9h_A CDNA FLJ77766, highly s 35.2 27 0.00092 26.0 3.0 7 182-188 198-204 (285)
368 3ljn_A Hypothetical protein; a 35.0 1.4E+02 0.0047 22.9 7.2 96 62-170 16-115 (364)
369 3t5v_B Nuclear mRNA export pro 34.5 1.5E+02 0.005 24.3 7.2 63 102-164 177-248 (455)
370 2f8y_A Notch homolog 1, transl 34.4 1.2E+02 0.0039 21.1 7.8 12 36-47 29-40 (223)
371 3f3f_C Nucleoporin NUP85; stru 34.4 1E+02 0.0035 26.0 6.3 88 30-121 480-569 (570)
372 4f52_E Glomulin; cullin-ring E 34.3 2.2E+02 0.0074 24.3 9.3 32 23-54 22-53 (596)
373 1oai_A Nuclear RNA export fact 34.2 42 0.0014 18.4 2.8 15 7-21 35-49 (59)
374 2p22_A Suppressor protein STP2 33.9 92 0.0031 21.5 5.1 47 207-254 112-158 (174)
375 1krq_A Ferritin; H-chain like 33.7 1.1E+02 0.0038 20.7 5.7 107 152-267 51-159 (167)
376 3bge_A Predicted ATPase; struc 32.5 1.3E+02 0.0046 21.3 9.2 38 76-115 19-56 (201)
377 2etb_A Transient receptor pote 32.1 1.2E+02 0.0041 21.7 6.1 87 107-195 5-111 (256)
378 2cwy_A Hypothetical protein TT 31.7 88 0.003 19.0 5.6 47 185-233 15-66 (94)
379 1ya0_A SMG-7 transcript varian 31.5 2.2E+02 0.0076 23.5 8.4 66 7-76 167-232 (497)
380 4g8k_A 2-5A-dependent ribonucl 31.1 1.7E+02 0.0058 22.1 9.9 50 181-241 280-329 (337)
381 1wty_A Hypothetical protein TT 30.9 1E+02 0.0035 19.5 6.9 76 117-199 4-80 (119)
382 2nsz_A Programmed cell death p 29.6 1.2E+02 0.0039 19.7 10.3 22 69-90 12-33 (129)
383 3qil_A Clathrin heavy chain 1; 29.4 85 0.0029 20.2 4.0 52 67-123 35-86 (125)
384 1ixm_A SPO0B, protein (sporula 29.3 1.1E+02 0.0036 21.6 5.0 26 32-57 35-60 (192)
385 3pvs_A Replication-associated 29.0 2.3E+02 0.0079 23.0 15.3 55 183-237 267-326 (447)
386 1n11_A Ankyrin; clathrin, BAND 28.9 86 0.0029 24.9 5.1 10 179-188 184-193 (437)
387 2xdt_A Endoplasmic reticulum a 27.4 3.5E+02 0.012 24.4 13.6 125 100-231 679-810 (897)
388 2dzn_A Probable 26S proteasome 26.0 82 0.0028 22.0 4.2 17 38-54 8-24 (228)
389 4fke_A Aminopeptidase N; zinc 25.9 3.7E+02 0.013 24.3 20.0 159 69-235 691-860 (909)
390 3e3v_A Regulatory protein RECX 25.5 1.7E+02 0.0057 20.2 9.4 49 82-133 51-99 (177)
391 2cih_A Ferritin heavy chain; a 25.3 1.7E+02 0.0057 20.3 5.4 12 30-41 33-44 (183)
392 2vxx_A Starvation induced DNA 25.3 1.7E+02 0.0059 20.3 5.6 19 153-171 75-93 (192)
393 3hzj_A Rabgap1L, RAB GTPase-ac 25.0 2.3E+02 0.0077 21.5 7.3 73 158-230 176-251 (310)
394 2crb_A Nuclear receptor bindin 24.8 1.2E+02 0.0042 18.4 3.8 26 30-55 16-41 (97)
395 1eum_A Ferritin 1; ECFTNA, met 24.6 1.6E+02 0.0056 19.7 6.6 107 152-267 51-159 (165)
396 3ltm_A Alpha-REP4; protein eng 24.2 1.8E+02 0.0061 20.0 19.4 170 28-219 32-201 (211)
397 1q2z_A ATP-dependent DNA helic 24.2 26 0.00088 22.5 1.0 51 41-94 39-93 (120)
398 4b4t_O 26S proteasome regulato 24.0 2.7E+02 0.0092 22.1 8.7 59 106-164 81-155 (393)
399 4hbd_A KN motif and ankyrin re 24.0 1.4E+02 0.0047 22.0 5.2 113 73-194 117-236 (276)
400 1jog_A Hypothetical protein HI 23.7 1.6E+02 0.0056 19.5 7.6 47 152-199 54-104 (146)
401 1ya0_A SMG-7 transcript varian 23.4 3.2E+02 0.011 22.6 10.5 73 72-148 160-232 (497)
402 2p22_A Suppressor protein STP2 23.3 95 0.0032 21.5 3.6 50 99-149 109-158 (174)
403 2keb_A DNA polymerase subunit 23.2 1.4E+02 0.0047 18.4 5.0 34 222-255 25-58 (101)
404 2dzn_A Probable 26S proteasome 22.8 46 0.0016 23.4 2.3 172 71-266 6-194 (228)
405 2yru_A Steroid receptor RNA ac 22.6 1.6E+02 0.0054 18.8 6.0 41 194-234 49-89 (118)
406 2ko4_A Mediator of RNA polymer 22.5 97 0.0033 18.1 3.0 31 97-127 32-62 (81)
407 3mv2_A Coatomer subunit alpha; 22.4 2.7E+02 0.0094 21.5 11.6 29 103-131 209-237 (325)
408 3rjo_A Endoplasmic reticulum a 22.3 3E+02 0.01 21.9 20.2 155 68-233 201-367 (419)
409 2v2p_A Ferritin light chain; m 22.1 1.9E+02 0.0064 19.7 5.1 13 29-41 27-39 (174)
410 2pnn_A Transient receptor pote 21.4 2E+02 0.0068 20.8 5.6 87 108-195 17-122 (273)
411 1ji5_A DLP-1; dodecamer, four- 21.2 1.6E+02 0.0054 19.0 4.5 25 242-266 102-127 (142)
412 3ka8_A Ferritin, middle subuni 20.7 2.1E+02 0.0072 19.6 6.1 10 9-18 11-20 (176)
413 3bvf_A Ferritin; iron storage, 20.6 2.1E+02 0.0073 19.6 6.3 107 152-267 65-173 (181)
414 1s3q_A Ferritin; ferroxidase, 20.4 2.1E+02 0.0072 19.5 7.1 15 29-43 23-37 (173)
415 3r88_A Anthranilate phosphorib 20.3 3.3E+02 0.011 21.6 7.6 65 136-201 23-89 (377)
416 3t5v_B Nuclear mRNA export pro 20.2 2.4E+02 0.0081 23.1 6.0 63 138-200 178-249 (455)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.2e-38 Score=262.54 Aligned_cols=214 Identities=13% Similarity=0.116 Sum_probs=114.8
Q ss_pred HHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHH
Q 048737 11 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIM 90 (274)
Q Consensus 11 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 90 (274)
+..+++++.++ +..+.....++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+....+
T Consensus 9 ~e~L~~~~~~k-~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 9 SENLSRKAKKK-AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred HHHHHHHHHHh-cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 33444444443 4333122345555666666666666666666666666666666666666666554432110
Q ss_pred HhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 048737 91 VGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT 170 (274)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 170 (274)
.+.++.++|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 81 ---------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd 139 (501)
T 4g26_A 81 ---------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR 139 (501)
T ss_dssp ---------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred ---------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Confidence 00112455555666666666666666666666666666666666666666666666666
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHH
Q 048737 171 PLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKA 250 (274)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 250 (274)
..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..
T Consensus 140 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 140 LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666555
Q ss_pred HHh
Q 048737 251 FYN 253 (274)
Q Consensus 251 ~~~ 253 (274)
|+.
T Consensus 220 F~s 222 (501)
T 4g26_A 220 FKS 222 (501)
T ss_dssp HHS
T ss_pred Hhc
Confidence 554
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.1e-38 Score=260.88 Aligned_cols=180 Identities=16% Similarity=0.236 Sum_probs=159.9
Q ss_pred CcccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCc---------HHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 048737 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ---------VDEALKFLRVMKGENCFPTLKFFSNAL 71 (274)
Q Consensus 1 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~~~l~ 71 (274)
+|++.|++++|+++|++|.+. |+.| |..+|++||.+|++.+. +++|.++|++|.+.|+.||..||++||
T Consensus 35 ~c~k~G~~~~A~~lf~~M~~~-Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 35 MCSKKGDVLEALRLYDEARRN-GVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HTTTSCCHHHHHHHHHHHHHH-TCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 489999999999999999996 9999 89999999999987654 678888888888888888888888888
Q ss_pred HHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 048737 72 DILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKK 151 (274)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 151 (274)
.+|++.|++++|.++|++|.+.| +.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|+
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g--~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFG--IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHHHHHcC--CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence 88888888888888888888888 8888888888888888888888888888888888888888888888888888888
Q ss_pred HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 048737 152 VHEVENFFHEMIKNEWQPTPLNCATAITMLLDA 184 (274)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (274)
+++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 191 ~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 191 ADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888764
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.1e-27 Score=204.03 Aligned_cols=255 Identities=8% Similarity=-0.030 Sum_probs=161.7
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhH
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (274)
+.|++++|+++|+++.+. .|.+..+|+.++.++.+.|++++|.++++++.+. .+.+..++..++..|.+.|++++|
T Consensus 317 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEI---DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHH
Confidence 344444444444444433 3334444444444444444444444444444432 234566666777777777777777
Q ss_pred HHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.
T Consensus 393 ~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 393 RRYFSKSSTMD---PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777776654 4456677777777777777777777777776653 2356677777777777777777777777776
Q ss_pred hCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCcc--HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 048737 164 KNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN----GILPL--EASANVLLVGLRNLGRLSDVRRFAEEMLNRRI 237 (274)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 237 (274)
+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.++|+++.+.+
T Consensus 469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 546 (597)
T 2xpi_A 469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS- 546 (597)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 543 335666777777777777777777777777654 44565 5677777777777777777777777776654
Q ss_pred ccCHHHHHHHHHHHHhcChh--HHHHHHHHHHH
Q 048737 238 LIYDVTMQKLKKAFYNESRS--MRDRFDSLERR 268 (274)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 268 (274)
+.+..+|..+..+|.+.|+. |.+.++++++.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 33667777777777777766 77777666654
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.9e-27 Score=202.67 Aligned_cols=258 Identities=11% Similarity=-0.069 Sum_probs=232.5
Q ss_pred CcccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh
Q 048737 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 80 (274)
Q Consensus 1 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (274)
+|.+.|++++|.++|+++.+. |+++.+|+.++..|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++
T Consensus 281 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 281 KTSHEDELRRAEDYLSSINGL----EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp TTTTHHHHHHHHHHHHTSTTG----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCH
T ss_pred HHcCcchHHHHHHHHHHhhcC----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCH
Confidence 367889999999999999763 4489999999999999999999999999999764 44778899999999999999
Q ss_pred hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 048737 81 THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFH 160 (274)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (274)
++|..+++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+
T Consensus 356 ~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 356 NKLYLISNDLVDRH---PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp HHHHHHHHHHHHHC---TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999765 6678999999999999999999999999998753 3368899999999999999999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhC----C
Q 048737 161 EMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR----R 236 (274)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~ 236 (274)
++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+... .+..+|+.++..|.+.|++++|.++|+++.+. +
T Consensus 432 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 432 TAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp HHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence 999864 45788999999999999999999999999998653 57889999999999999999999999999876 6
Q ss_pred CccC--HHHHHHHHHHHHhcChh--HHHHHHHHHHHh
Q 048737 237 ILIY--DVTMQKLKKAFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 237 ~~~~--~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 269 (274)
..|+ ..+|..+..+|.+.|+. |.+.++++++..
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 6787 78999999999999998 999999988754
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=8.3e-23 Score=165.23 Aligned_cols=234 Identities=11% Similarity=0.020 Sum_probs=151.4
Q ss_pred CchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHH
Q 048737 26 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYN 105 (274)
Q Consensus 26 p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (274)
|++...+..+...+...|++++|++.|+++.+.. +.+..+|..+...+...|+++.|...|+++.+.+ +.+...|.
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~ 207 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYI 207 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHH
Confidence 3333334444444444444444444444444321 2234445555555555555555555555555543 33344555
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 048737 106 AVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDAD 185 (274)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (274)
.+...+...|++++|...|++..... +.+..++..+...|...|++++|...++++.+.. +.+..++..+...+.+.|
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC
Confidence 55555555566666666665555432 1246677778888888888888888888887753 234567888888888888
Q ss_pred ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHH
Q 048737 186 EPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFD 263 (274)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~ 263 (274)
++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..++.+.|+. |.+.++
T Consensus 286 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 286 SVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888888764 3567788888888888888888888888887653 34567788888888888877 888887
Q ss_pred HHHH
Q 048737 264 SLER 267 (274)
Q Consensus 264 ~~~~ 267 (274)
++++
T Consensus 364 ~a~~ 367 (388)
T 1w3b_A 364 EAIR 367 (388)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=1.2e-22 Score=164.36 Aligned_cols=256 Identities=10% Similarity=0.045 Sum_probs=136.6
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhH
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (274)
+.|++++|...++..... .|.+..+|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++.+.|++++|
T Consensus 45 ~~~~~~~a~~~~~~a~~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 120 (388)
T 1w3b_A 45 QCRRLDRSAHFSTLAIKQ---NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGA 120 (388)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHH
T ss_pred HcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHH
Confidence 345555555555555443 44455555555555555555555555555555431 22334455555555555555555
Q ss_pred HHHHHHHHhcCCc-------------------------------cCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 048737 84 VQLWDIMVGIGFN-------------------------------LMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGA 132 (274)
Q Consensus 84 ~~~~~~~~~~~~~-------------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 132 (274)
.+.|+++.+...+ .+.+..+|..+..++.+.|++++|...|+++.+..+
T Consensus 121 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 200 (388)
T 1w3b_A 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200 (388)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 5555555543300 022334444444444444444444444444444321
Q ss_pred CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHH
Q 048737 133 FPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVL 212 (274)
Q Consensus 133 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (274)
.+...|..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|...++++.+.+. .+..+|..+
T Consensus 201 -~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 277 (388)
T 1w3b_A 201 -NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNL 277 (388)
T ss_dssp -TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHH
Confidence 123444444444445555555555555444421 12245566666666667777777777766666442 334566666
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHH
Q 048737 213 LVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLER 267 (274)
Q Consensus 213 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 267 (274)
...+.+.|++++|...|+++.+.. +.+..++..+...+.+.|+. |.+.++++++
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 667777777777777777766552 34566666666777776666 6666665543
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.1e-21 Score=161.45 Aligned_cols=189 Identities=13% Similarity=0.095 Sum_probs=109.7
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|.+.|++++|+.+|+++.+. .|.+..+|..++.++...|++++|+..|+++.+.+ +.+...+..+..++.+.|+++
T Consensus 36 ~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLD 111 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence 34567777777777777654 56566677777777777777777777777776643 334666666777777777777
Q ss_pred hHHHHHHHHHhcCCccCccH---HhHHHHH------------HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNL---IMYNAVV------------GLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 146 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 146 (274)
+|...|+++.+.. +.+. ..+..+. ..+.+.|++++|...|+++.+.. +.+..++..+...|
T Consensus 112 ~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 187 (450)
T 2y4t_A 112 EAEDDFKKVLKSN---PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECF 187 (450)
T ss_dssp HHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 7777777776654 2233 3443332 22555566666666665555432 22445555555555
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048737 147 IKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (274)
...|++++|...|+++.+.. +.+..++..+..+|...|++++|...++++.+
T Consensus 188 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 188 IKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555554432 22344455555555555555555555555544
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2.5e-21 Score=159.36 Aligned_cols=255 Identities=10% Similarity=0.012 Sum_probs=216.3
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC-H---HHHHHH-------
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-L---KFFSNA------- 70 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l------- 70 (274)
|.+.|++++|+..|+++.+. .|.+..+|..++..|.+.|++++|++.|+++.+.. |+ . ..+..+
T Consensus 70 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~ 144 (450)
T 2y4t_A 70 FLAMGKSKAALPDLTKVIQL---KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ 144 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH
Confidence 56789999999999999876 78789999999999999999999999999999753 44 3 555555
Q ss_pred -----HHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048737 71 -----LDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 145 (274)
Q Consensus 71 -----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (274)
...+...|+++.|...|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+.. +.+..+|..+...
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVC---VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTL 220 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444889999999999999999875 6678899999999999999999999999998763 3468999999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCc-chHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCC-cc--HHHH
Q 048737 146 LIKNKKVHEVENFFHEMIKNEWQPTP-LNCATA------------ITMLLDADEPEFAIEIWNYILENGIL-PL--EASA 209 (274)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~ 209 (274)
|...|++++|...|+++.+. .|+. ..+..+ ...+...|++++|...|+++.+.... |. ...+
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 298 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSK 298 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 99999999999999999874 4554 344444 78899999999999999999885422 11 4578
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHH
Q 048737 210 NVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLERR 268 (274)
Q Consensus 210 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 268 (274)
..+...+.+.|++++|...++++.+.. +.+...+..+..+|...|+. |.+.++++++.
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 889999999999999999999998763 34678999999999999988 88888888753
No 9
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=1.8e-21 Score=156.02 Aligned_cols=247 Identities=12% Similarity=0.017 Sum_probs=203.9
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|.+.|++++|++.|+++.+. .|.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 75 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 150 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAILQ---DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQ 150 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHH
Confidence 45789999999999999876 78889999999999999999999999999998853 456889999999999999999
Q ss_pred hHHHHHHHHHhcCCccCccHHhH----------HHHHHHHHhcCChhhHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcC
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMY----------NAVVGLLCNNNDVDNVFRFFDQMVFHGAF-PDSLTYNMIFECLIKNK 150 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~ 150 (274)
+|...++++.+.. +.+...+ ..+...+.+.|++++|...|+++.+.... ++..++..+...|...|
T Consensus 151 ~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 151 DACEALKNWIKQN---PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp HHHHHHHHHHHHC---HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC---ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence 9999999999865 2333333 34578899999999999999999886432 15889999999999999
Q ss_pred CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHH
Q 048737 151 KVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAE 230 (274)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 230 (274)
++++|...+++..+.. +.+..++..+..+|...|++++|...+++..+... .+..++..+..+|...|++++|...|+
T Consensus 228 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 228 EFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREAVSNFL 305 (365)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998753 34577899999999999999999999999998652 457889999999999999999999999
Q ss_pred HHHhCCCc-----------cCHHHHHHHHHHHHhcChh
Q 048737 231 EMLNRRIL-----------IYDVTMQKLKKAFYNESRS 257 (274)
Q Consensus 231 ~m~~~~~~-----------~~~~~~~~l~~~~~~~g~~ 257 (274)
+..+.... .+...|..+..++...|+.
T Consensus 306 ~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 306 TALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 98764211 1357788899999888887
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=7.8e-21 Score=149.89 Aligned_cols=255 Identities=11% Similarity=-0.012 Sum_probs=210.1
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-Chh
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN-DST 81 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 81 (274)
...|++++|+++|+++.+. .|.+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...| +++
T Consensus 33 ~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 108 (330)
T 3hym_B 33 YYNCDFKMCYKLTSVVMEK---DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNE 108 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHH
T ss_pred HHcCCHHHHHHHHHHHHHc---CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHH
Confidence 4568999999999999776 77777788888899999999999999999988753 446778888889999999 899
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHE 161 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (274)
.|...|+++.+.. +.+...|..+..++...|++++|...|++..+... .+...+..+...|...|++++|...+++
T Consensus 109 ~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 109 HARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp HHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999998875 55677889999999999999999999999887632 3467777788899999999999999999
Q ss_pred HHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 048737 162 MIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENG--------ILPLEASANVLLVGLRNLGRLSDVRRFAEEML 233 (274)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 233 (274)
..+.. +.+...+..+...+...|++++|...+++..+.. .+.+..++..+...|...|++++|...+++..
T Consensus 185 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 185 ALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88754 3456788888999999999999999998887632 13345688889999999999999999999988
Q ss_pred hCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHH
Q 048737 234 NRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLER 267 (274)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 267 (274)
+.. +.+...+..+...+...|+. |.+.++++++
T Consensus 264 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 264 VLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred hhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 764 33567888888899998887 7777776554
No 11
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=5.1e-21 Score=153.39 Aligned_cols=260 Identities=14% Similarity=0.025 Sum_probs=210.7
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|.+.|++++|+..|+++.+. .|.+..+|..+...+...|++++|++.|+++.+.. +.+..++..+..++...|+++
T Consensus 74 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 149 (368)
T 1fch_A 74 RLQEGDLPNAVLLFEAAVQQ---DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQR 149 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 45678999999999999776 78788899999999999999999999999988764 457888999999999999999
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHH---------------HHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNA---------------VVGLLCNNNDVDNVFRFFDQMVFHGAFP-DSLTYNMIFEC 145 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~ 145 (274)
+|...++++.... +.+...+.. .+..+...|++++|...|+++.+..... +..++..+...
T Consensus 150 ~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~ 226 (368)
T 1fch_A 150 QACEILRDWLRYT---PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 226 (368)
T ss_dssp HHHHHHHHHHHTS---TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH
Confidence 9999999998865 333333321 1333448899999999999988764221 47889999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchH
Q 048737 146 LIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDV 225 (274)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 225 (274)
|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+..+|...|++++|
T Consensus 227 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 227 FNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998753 33567899999999999999999999999988653 5678899999999999999999
Q ss_pred HHHHHHHHhCCCcc----------CHHHHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 226 RRFAEEMLNRRILI----------YDVTMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 226 ~~~~~~m~~~~~~~----------~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
...|++..+..... ...+|..+..++...|+. |..++.+.++.++
T Consensus 305 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 305 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 99999987642111 267899999999999987 7777776665544
No 12
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=4.4e-21 Score=151.11 Aligned_cols=259 Identities=8% Similarity=0.003 Sum_probs=215.5
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
+.+.|++++|..+|+++.+. .|.+..+|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|+++
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQA---APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 106 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHH
Confidence 45679999999999999876 78788999999999999999999999999998863 457888999999999999999
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHH--------------HH-HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAV--------------VG-LLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 146 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 146 (274)
+|...++++.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+..++..+...|
T Consensus 107 ~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 107 AALASLRAWLLSQ---PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLY 182 (327)
T ss_dssp HHHHHHHHHHHTS---TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 9999999999865 3344444444 33 4778899999999999998864 33688999999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHH
Q 048737 147 IKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVR 226 (274)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 226 (274)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...|...|++++|.
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999998754 34567889999999999999999999999988653 46778999999999999999999
Q ss_pred HHHHHHHhCCCcc-----------CHHHHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 227 RFAEEMLNRRILI-----------YDVTMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 227 ~~~~~m~~~~~~~-----------~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
..+++..+..... +...+..+..++...|+. |.+++++.++...
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 9999987753221 477889999999999988 7777766555443
No 13
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.88 E-value=5.3e-23 Score=176.89 Aligned_cols=152 Identities=11% Similarity=0.042 Sum_probs=122.9
Q ss_pred ccHHhHHHHHHHHHhcCChhhHHHHHHHHH---hcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHH
Q 048737 99 PNLIMYNAVVGLLCNNNDVDNVFRFFDQMV---FHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCA 175 (274)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 175 (274)
.-..|||+||++|++.|++++|.++|++|. ..|+.||+.|||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 346789999999999999999999998875 45789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccC------HHHHHHHH
Q 048737 176 TAITMLLDADEP-EFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY------DVTMQKLK 248 (274)
Q Consensus 176 ~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~~l~ 248 (274)
++|+++++.|+. +.|.++|++|.+.|+.||..+|++++.++.+. .+++.++++ ..+..|+ ..|...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999874 78899999999999999999999988765554 233333333 3344443 34455566
Q ss_pred HHHHhcC
Q 048737 249 KAFYNES 255 (274)
Q Consensus 249 ~~~~~~g 255 (274)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666555
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=7.1e-19 Score=140.08 Aligned_cols=188 Identities=13% Similarity=0.091 Sum_probs=110.6
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhh
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (274)
.+.|++++|+..|+++.+. .|.++.+|..+...+...|++++|+..++++.+.. +.+...+..+..++...|++++
T Consensus 14 ~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 14 LAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHH
Confidence 4566777777777776654 56566677777777777777777777777766542 2345666666666666777777
Q ss_pred HHHHHHHHHhcCCccC---ccHHhHHHH------------HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 048737 83 TVQLWDIMVGIGFNLM---PNLIMYNAV------------VGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 147 (274)
Q Consensus 83 a~~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 147 (274)
|...++++.+.. + .+...+..+ ...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 90 A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 90 AEDDFKKVLKSN---PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFI 165 (359)
T ss_dssp HHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC---CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 777777666643 2 233334333 355556666666666666655542 224555555555666
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048737 148 KNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (274)
..|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+
T Consensus 166 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666666666555432 22344555555555555555555555555544
No 15
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=3.8e-22 Score=171.67 Aligned_cols=151 Identities=15% Similarity=0.161 Sum_probs=126.4
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKG---ENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMY 104 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (274)
...+|++||.+|++.|++++|.++|.+|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.| +.||.+||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G--~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG--LTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCcHHHH
Confidence 345899999999999999999999988764 5789999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCCh-hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC------cchHHHH
Q 048737 105 NAVVGLLCNNNDV-DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT------PLNCATA 177 (274)
Q Consensus 105 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l 177 (274)
|++|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ ..+..|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999985 78999999999999999999999999877663 444555544 3344444 4455566
Q ss_pred HHHHHhcC
Q 048737 178 ITMLLDAD 185 (274)
Q Consensus 178 ~~~~~~~~ 185 (274)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 66666554
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.3e-18 Score=138.48 Aligned_cols=255 Identities=9% Similarity=0.006 Sum_probs=213.1
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCC----CHHHHHHH-------
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP----TLKFFSNA------- 70 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l------- 70 (274)
|...|++++|+..|+++.+. .|.+..+|..+...+...|++++|+..|+++.+. .| +...+..+
T Consensus 47 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 121 (359)
T 3ieg_A 47 FLAMGKSKAALPDLTKVIAL---KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQ 121 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh---CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHH
Confidence 45679999999999999876 7878899999999999999999999999999875 34 34444444
Q ss_pred -----HHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048737 71 -----LDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 145 (274)
Q Consensus 71 -----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (274)
...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+...
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 197 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVC---VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTL 197 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 578889999999999999999875 6678899999999999999999999999998863 3468899999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCc-chHH------------HHHHHHHhcCChHHHHHHHHHHHHCCCCccH----HH
Q 048737 146 LIKNKKVHEVENFFHEMIKNEWQPTP-LNCA------------TAITMLLDADEPEFAIEIWNYILENGILPLE----AS 208 (274)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 208 (274)
+...|++++|...+++..+.. |+. ..+. .+...+.+.|++++|...+++..+.... +. ..
T Consensus 198 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 274 (359)
T 3ieg_A 198 YYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRS 274 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHH
Confidence 999999999999999998753 443 3332 2366788999999999999999886532 22 33
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHHh
Q 048737 209 ANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 209 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 269 (274)
+..+...+...|++++|...+++..+.. +.+..++..+...+...|+. |.+.++++++..
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5567788999999999999999998863 33778899999999999988 888888877543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=5e-19 Score=139.49 Aligned_cols=246 Identities=9% Similarity=-0.042 Sum_probs=210.3
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccC-cHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK-QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 80 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (274)
+.+.|++++|...|+++.+. .|.++.+|..+...+...| ++++|+..|++..+.. +.+...+..+...+...|++
T Consensus 66 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 66 LVELNKANELFYLSHKLVDL---YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHH---CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCH
T ss_pred HHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCH
Confidence 34679999999999999876 7878899999999999999 9999999999999864 44678899999999999999
Q ss_pred hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 048737 81 THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFH 160 (274)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (274)
++|...++++.+.. +.+...+..+...|...|++++|...+++..+.. +.+..++..+...+...|++++|...++
T Consensus 142 ~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 142 DQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp HHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 99999999999875 4567778889999999999999999999998864 3467889999999999999999999999
Q ss_pred HHHhCC--------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 048737 161 EMIKNE--------WQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEM 232 (274)
Q Consensus 161 ~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 232 (274)
+..+.. .+.+..++..+..++...|++++|...+++..+... .+...+..+...|...|++++|...+++.
T Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 987631 133456899999999999999999999999998653 46678999999999999999999999998
Q ss_pred HhCCCccCHHHHHHHHHHH-HhcChh
Q 048737 233 LNRRILIYDVTMQKLKKAF-YNESRS 257 (274)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~-~~~g~~ 257 (274)
.+.. +.+...+..+..++ ...|+.
T Consensus 297 l~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 297 LGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HccC-CCchHHHHHHHHHHHHHhCch
Confidence 8764 33667777777777 455554
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=3.5e-19 Score=142.71 Aligned_cols=258 Identities=9% Similarity=-0.023 Sum_probs=204.9
Q ss_pred ccccchHHHHH-HHHHHHhccCCCCch----HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 048737 3 EKEGNVVEANK-TFGEMVERFEWNPEH----VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 77 (274)
Q Consensus 3 ~~~g~~~~a~~-~~~~~~~~~~~~p~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (274)
...|++++|.+ .|++... +.|.+ ...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...
T Consensus 36 ~~~~~~~~a~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQ---FEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp ----------CHHHHCCCC---CCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhHHHh---cCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 34567778877 7776533 24433 4568889999999999999999999999864 55788999999999999
Q ss_pred CChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHH---------------H
Q 048737 78 NDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNM---------------I 142 (274)
Q Consensus 78 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l 142 (274)
|+++.|...|+++.+.. +.+..++..+..+|...|++++|.+.++++...... +...+.. .
T Consensus 112 g~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 112 EQELLAISALRRCLELK---PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp TCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CT
T ss_pred cCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHH
Confidence 99999999999999976 667889999999999999999999999999886432 2222221 2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 048737 143 FECLIKNKKVHEVENFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGR 221 (274)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 221 (274)
+..+...|++++|...++++.+.... ++..++..+...+...|++++|...++++.+... .+..++..+...+...|+
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCC
Confidence 34444889999999999999875311 1467889999999999999999999999988653 457889999999999999
Q ss_pred cchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 222 LSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 222 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
+++|...|+++.+.. +.+...+..+..++.+.|+. |.+.++++++...
T Consensus 267 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 267 SEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999999999998764 34678899999999999988 9999998887643
No 19
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.4e-18 Score=145.20 Aligned_cols=88 Identities=8% Similarity=0.001 Sum_probs=65.0
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|.+.|++++|+..|+++... .| ++.+|..++.++.+.|++++|+..++++.+.+ +.+..++..+..++...|+++
T Consensus 16 ~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALEL---KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHH---CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHHHHhc---Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHH
Confidence 45667888888888888765 56 67778888888888888888888888777653 445667777777777777777
Q ss_pred hHHHHHHHHHhcC
Q 048737 82 HTVQLWDIMVGIG 94 (274)
Q Consensus 82 ~a~~~~~~~~~~~ 94 (274)
+|...|+++...+
T Consensus 91 ~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 91 DAMFDLSVLSLNG 103 (514)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhcC
Confidence 7777777776543
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=2.2e-18 Score=133.86 Aligned_cols=246 Identities=12% Similarity=0.070 Sum_probs=199.1
Q ss_pred cccchHHHHHHHHHHHhccCCCCch-HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhh
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 82 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (274)
..|+++.|+..++.+... .|++ ......+..+|...|+++.|+..++. .-+|+..++..+...+...++.+.
T Consensus 11 ~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 468999999998887443 6644 34667788999999999999986644 245677888889999999999999
Q ss_pred HHHHHHHHHhcCCccCc-cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 048737 83 TVQLWDIMVGIGFNLMP-NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHE 161 (274)
Q Consensus 83 a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (274)
|.+.++++...+ ..| +...+..+..++.+.|++++|++.+++ +.+...+..++..+.+.|++++|.+.+++
T Consensus 84 A~~~l~~ll~~~--~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 84 IVAELDREMSRS--VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHSC--CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998765 334 566677778999999999999999987 35788999999999999999999999999
Q ss_pred HHhCCCCCCcchH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 048737 162 MIKNEWQPTPLNC---ATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRIL 238 (274)
Q Consensus 162 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 238 (274)
+.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++..+.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 98853 664322 123344455689999999999999874 4678899999999999999999999999998764 3
Q ss_pred cCHHHHHHHHHHHHhcChh---HHHHHHHHHHH
Q 048737 239 IYDVTMQKLKKAFYNESRS---MRDRFDSLERR 268 (274)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~---a~~~~~~~~~~ 268 (274)
-+..++..++..+...|+. +.++++++++.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3778888999999988876 45677776654
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=7.5e-19 Score=140.82 Aligned_cols=235 Identities=10% Similarity=-0.024 Sum_probs=195.8
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHH
Confidence 34458899999999999999999999999863 5578899999999999999999999999999975 5678899999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCC-hh----------hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-CCcchHH
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFPD-SL----------TYNMIFECLIKNKKVHEVENFFHEMIKNEWQ-PTPLNCA 175 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~----------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 175 (274)
..+|...|++++|...|+++.+.. |+ .. .+..+...+...|++++|..+++++.+..-. ++..++.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 999999999999999999998753 32 22 2334578899999999999999999886411 1577899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 048737 176 TAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNES 255 (274)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 255 (274)
.+...+...|++++|...+++..+... .+..+|..+..+|...|++++|...|++..+.. +.+..++..+..+|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 999999999999999999999998653 567899999999999999999999999998863 335788999999999999
Q ss_pred hh--HHHHHHHHHHHhh
Q 048737 256 RS--MRDRFDSLERRWK 270 (274)
Q Consensus 256 ~~--a~~~~~~~~~~~~ 270 (274)
+. |.+.++++++...
T Consensus 296 ~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQR 312 (365)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88 9999999887653
No 22
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.2e-18 Score=143.93 Aligned_cols=259 Identities=12% Similarity=0.038 Sum_probs=219.9
Q ss_pred ccccchHHHHHHHHHHHh-----c--cCC----CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 048737 3 EKEGNVVEANKTFGEMVE-----R--FEW----NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 71 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~-----~--~~~----~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 71 (274)
.+.|++++|+..|+++.. . ..- .|.+..+|..+...+...|++++|+..|+++.+.. |+...+..+.
T Consensus 200 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~ 277 (514)
T 2gw1_A 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMA 277 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHH
Confidence 358999999999999876 1 000 15567889999999999999999999999998854 4488899999
Q ss_pred HHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 048737 72 DILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKK 151 (274)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 151 (274)
.++...|+++.|...++++.+.. +.+..++..+..++...|++++|...|++..+... .+..++..+...+...|+
T Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 353 (514)
T 2gw1_A 278 LIMADRNDSTEYYNYFDKALKLD---SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENK 353 (514)
T ss_dssp HHHHTSSCCTTGGGHHHHHHTTC---TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTC
T ss_pred HHHHHCCCHHHHHHHHHHHhhcC---cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCC
Confidence 99999999999999999999875 56788899999999999999999999999988643 367889999999999999
Q ss_pred HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-cc----HHHHHHHHHHHHh---cCCcc
Q 048737 152 VHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGIL-PL----EASANVLLVGLRN---LGRLS 223 (274)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~ 223 (274)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... ++ ...+..+...+.. .|+++
T Consensus 354 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 432 (514)
T 2gw1_A 354 FDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432 (514)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred HHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence 999999999998753 345678899999999999999999999998874311 21 3488899999999 99999
Q ss_pred hHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHHh
Q 048737 224 DVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 224 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 269 (274)
+|...+++..+.. +.+..++..+...+...|+. |.+.++++++..
T Consensus 433 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 433 EATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9999999998764 34677888999999999988 999998887754
No 23
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=5.1e-18 Score=142.63 Aligned_cols=257 Identities=12% Similarity=0.065 Sum_probs=198.3
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|.+.|++++|++.|+++... .|.++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++...|+++
T Consensus 35 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIEL---DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhccHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHH
Confidence 45678888888888888765 67788888888888888888888888888887753 445777777888888888887
Q ss_pred hHHHHHHHH-----------------------------------------------------------------------
Q 048737 82 HTVQLWDIM----------------------------------------------------------------------- 90 (274)
Q Consensus 82 ~a~~~~~~~----------------------------------------------------------------------- 90 (274)
+|...|+.+
T Consensus 111 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 111 DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 777766422
Q ss_pred --------------------------------------HhcCCccCcc-------HHhHHHHHHHHHhcCChhhHHHHHH
Q 048737 91 --------------------------------------VGIGFNLMPN-------LIMYNAVVGLLCNNNDVDNVFRFFD 125 (274)
Q Consensus 91 --------------------------------------~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~ 125 (274)
.+.. +.+ ..++..+...+...|++++|...|+
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN---TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC---CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2211 111 2245566677778888999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcc
Q 048737 126 QMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPL 205 (274)
Q Consensus 126 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 205 (274)
+..+. .|+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+... .+
T Consensus 268 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~ 343 (537)
T 3fp2_A 268 ESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-EN 343 (537)
T ss_dssp HHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CC
Confidence 88875 4567788888888889999999999999888754 34567888888999999999999999999887653 34
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 206 EASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 206 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
...+..+...|...|++++|...++++.+.. +.+...+..+...+...|+. |.+.++++++...
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 5778888899999999999999999988764 33566788888899999988 8888888877653
No 24
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.82 E-value=2.7e-18 Score=127.69 Aligned_cols=200 Identities=12% Similarity=-0.050 Sum_probs=161.2
Q ss_pred CchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHH
Q 048737 26 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYN 105 (274)
Q Consensus 26 p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (274)
|+++..+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. |.+...+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~ 77 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART---PRYLGGYM 77 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHH
Confidence 4477889999999999999999999999998864 5568889999999999999999999999999976 56788899
Q ss_pred HHHHHHHhc-----------CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchH
Q 048737 106 AVVGLLCNN-----------NDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNC 174 (274)
Q Consensus 106 ~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 174 (274)
.+..++.+. |++++|+..|++..+..+ -+...|..+...+...|++++|+..|++..+.. .+...+
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 999999999 999999999999988632 257888899999999999999999999998876 677888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 048737 175 ATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEML 233 (274)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 233 (274)
..+..++...|++++|...|++..+... .+...+..+...+...|++++|...+++..
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999988653 456788888999999999999999888764
No 25
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=3.4e-17 Score=121.82 Aligned_cols=215 Identities=11% Similarity=0.075 Sum_probs=181.8
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhH
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMY 104 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (274)
.|.++..|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~ 79 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK---PDSAEIN 79 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCChHHH
Confidence 56688899999999999999999999999998753 4568889999999999999999999999999875 5678889
Q ss_pred HHHHHHHHhc-CChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 048737 105 NAVVGLLCNN-NDVDNVFRFFDQMVFHGAFPD-SLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLL 182 (274)
Q Consensus 105 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (274)
..+...+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKM 158 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHH
Confidence 9999999999 999999999999988333333 6788899999999999999999999998753 334678889999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHH
Q 048737 183 DADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQK 246 (274)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 246 (274)
..|++++|...+++..+.....+...+..+...+...|+.+++..+++.+.+. .|+......
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~ 220 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQT 220 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 99999999999999988653246677788888889999999999999998765 344444433
No 26
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=4.6e-17 Score=136.80 Aligned_cols=253 Identities=12% Similarity=0.006 Sum_probs=209.8
Q ss_pred cchHHHHHHHHHHHhccCCCCchHh-------HHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 048737 6 GNVVEANKTFGEMVERFEWNPEHVL-------AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 78 (274)
Q Consensus 6 g~~~~a~~~~~~~~~~~~~~p~~~~-------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (274)
|++++|..+|+++.+. .|++.. +|..+...+...|++++|+..|++..+. .|+...+..+...+...|
T Consensus 216 ~~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 290 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSA---NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKE 290 (537)
T ss_dssp HHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHHHHH---CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhc
Confidence 5899999999999765 675543 5667778888999999999999999885 466888999999999999
Q ss_pred ChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 048737 79 DSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENF 158 (274)
Q Consensus 79 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 158 (274)
+++.|...++++.+.. +.+..++..+..++...|++++|...|++..+... .+...|..+...+...|++++|...
T Consensus 291 ~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 291 NSQEFFKFFQKAVDLN---PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp CCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999875 56788899999999999999999999999988642 3578899999999999999999999
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CccHHHHHHHHHHHHhc----------CCcc
Q 048737 159 FHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI-----LPLEASANVLLVGLRNL----------GRLS 223 (274)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~ 223 (274)
++++.+.. +.+...+..+...+...|++++|...++++.+... ......+......+... |+++
T Consensus 367 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 445 (537)
T 3fp2_A 367 FNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFN 445 (537)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHH
Confidence 99998764 34567889999999999999999999999876431 11122244455667777 9999
Q ss_pred hHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHHh
Q 048737 224 DVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 224 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 269 (274)
+|...|++..+.. +.+...+..+...+...|+. |.+.++++++..
T Consensus 446 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 446 AAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999999998864 34678899999999999988 999998887754
No 27
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=4e-17 Score=123.86 Aligned_cols=205 Identities=10% Similarity=0.080 Sum_probs=175.9
Q ss_pred CCch-HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHh
Q 048737 25 NPEH-VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIM 103 (274)
Q Consensus 25 ~p~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 103 (274)
.|.+ +..|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~ 107 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD---SRNARV 107 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHH
Confidence 4544 6788999999999999999999999998753 4567888999999999999999999999999875 557888
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 048737 104 YNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLL 182 (274)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (274)
+..+...|...|++++|.+.++++.+.+..| +...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHH
Confidence 9999999999999999999999998733344 46778888999999999999999999988754 335678889999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 183 DADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
..|++++|...++++.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 187 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999887543 56677888889999999999999999999876
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=5.3e-18 Score=133.41 Aligned_cols=223 Identities=10% Similarity=-0.004 Sum_probs=186.1
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHH-----------
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA----------- 70 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------- 70 (274)
|.+.|++++|.+.|+++.+. .|.+..++..+...+...|++++|++.++++.+.. +.+...+..+
T Consensus 65 ~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 140 (327)
T 3cv0_A 65 QAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLN 140 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHhc---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHH
Confidence 45789999999999999876 78788999999999999999999999999998753 2223333332
Q ss_pred ---HH-HHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048737 71 ---LD-ILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 146 (274)
Q Consensus 71 ---~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 146 (274)
.. .+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++..+...+
T Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 216 (327)
T 3cv0_A 141 VQSEDFFFAAPNEYRECRTLLHAALEMN---PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATL 216 (327)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHcccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 22 3677889999999999999875 5678899999999999999999999999998763 33578899999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-----------cHHHHHHHHHH
Q 048737 147 IKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILP-----------LEASANVLLVG 215 (274)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~ 215 (274)
...|++++|...++++.+.. +.+...+..+..++...|++++|...+++..+..... +...|..+..+
T Consensus 217 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 217 ANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 99999999999999998753 3456788999999999999999999999998754322 57889999999
Q ss_pred HHhcCCcchHHHHHHHHH
Q 048737 216 LRNLGRLSDVRRFAEEML 233 (274)
Q Consensus 216 ~~~~g~~~~a~~~~~~m~ 233 (274)
+...|++++|..++++..
T Consensus 296 ~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHTTCHHHHHHHTTCCS
T ss_pred HHhcCCHHHHHHHHHHHH
Confidence 999999999999887543
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.1e-17 Score=124.64 Aligned_cols=226 Identities=7% Similarity=0.035 Sum_probs=103.1
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCcc----HHhH
Q 048737 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPN----LIMY 104 (274)
Q Consensus 29 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 104 (274)
...|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...++++.+...+..++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3444455555555555555555555554443 444455555555555555555555555554432000000 3444
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 048737 105 NAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDA 184 (274)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (274)
..+..++...|++++|...|++..+. .|+. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 55555555555555555555555442 2221 22333344455555555444421 11233444444444555
Q ss_pred CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHH
Q 048737 185 DEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRF 262 (274)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~ 262 (274)
|++++|...+++..+... .+..++..+...|...|++++|...+++..+.. +.+...+..+..++...|+. |.+.+
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 555555555555444321 233444444455555555555555555544432 12344444444455555444 44444
Q ss_pred HHHHHH
Q 048737 263 DSLERR 268 (274)
Q Consensus 263 ~~~~~~ 268 (274)
+++++.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444433
No 30
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=6.2e-17 Score=124.21 Aligned_cols=227 Identities=12% Similarity=0.068 Sum_probs=184.0
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhCCC
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP--TLKFFSNALDILVKLND 79 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 79 (274)
|.+.|++++|++.|++..+. .|.+..+|..+...+...|++++|++.+++..+.+..| ....|..+...+...|+
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAK---KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHT---TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 45789999999999999776 78778899999999999999999999999998843222 23458889999999999
Q ss_pred hhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 048737 80 STHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFF 159 (274)
Q Consensus 80 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 159 (274)
+++|...|+++.+.. +.+..++..+..+|...|++++|...|++..+.. +.+...|..+...+...+++++|...+
T Consensus 90 ~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp HHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999875 5567889999999999999999999999998762 335677777773444556999999999
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCcc------HHHHHHHHHHHHhcCCcchHHHHH
Q 048737 160 HEMIKNEWQPTPLNCATAITMLLDADE---PEFAIEIWNYILENG-ILPL------EASANVLLVGLRNLGRLSDVRRFA 229 (274)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~~~ 229 (274)
++..+.. +.+...+..+..++...|+ ++.|...+++..+.. -.|+ ..+|..+...|...|++++|...|
T Consensus 166 ~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 166 VKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9998753 2335677778888888888 888999988887632 1233 257788888999999999999999
Q ss_pred HHHHhCC
Q 048737 230 EEMLNRR 236 (274)
Q Consensus 230 ~~m~~~~ 236 (274)
++..+..
T Consensus 245 ~~al~~~ 251 (272)
T 3u4t_A 245 KNILALD 251 (272)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998764
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=1.4e-16 Score=123.66 Aligned_cols=216 Identities=13% Similarity=0.081 Sum_probs=177.6
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhCCCh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-TLKFFSNALDILVKLNDS 80 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 80 (274)
|...|+++.|+..++. . .|++..++..+...+...++.++|++.++++...+..| +...+..+...+...|++
T Consensus 44 yi~~g~~~~al~~~~~---~---~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 44 YLAQRKYGVVLDEIKP---S---SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117 (291)
T ss_dssp HHHTTCHHHHHHHSCT---T---SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHhcc---c---CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH
Confidence 5667888888876643 1 44488899999999999999999999999998876545 566677777999999999
Q ss_pred hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH---HHHHHHHHhcCCHhHHHH
Q 048737 81 THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTY---NMIFECLIKNKKVHEVEN 157 (274)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~ 157 (274)
++|.+.+++ +.+...+..+..++.+.|++++|.+.|+++.+.. |+.... ...+..+...|++++|..
T Consensus 118 ~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 118 DAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp HHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence 999999987 2467789999999999999999999999998863 553222 123344445689999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcch-HHHHHHHHHhC
Q 048737 158 FFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSD-VRRFAEEMLNR 235 (274)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 235 (274)
+|+++.+.. +.+...++.+..++.+.|++++|...+++..+... -+..++..++..+...|+.++ +.++++++.+.
T Consensus 188 ~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 188 IFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999863 56778899999999999999999999999998653 567789999999999999976 57899998876
No 32
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.79 E-value=8e-17 Score=123.66 Aligned_cols=243 Identities=7% Similarity=-0.084 Sum_probs=193.2
Q ss_pred ccccchHHHHHHHHHHHhccCC-CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 3 EKEGNVVEANKTFGEMVERFEW-NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
...|++++|++.|+++.+.... .|.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 4568999999999999874111 24568889999999999999999999999998863 456889999999999999999
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHE 161 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (274)
+|...|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+.+
T Consensus 95 ~A~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 95 AAYEAFDSVLELD---PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999975 557889999999999999999999999999885 45555555555666778999999999988
Q ss_pred HHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc---cHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 048737 162 MIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILP---LEASANVLLVGLRNLGRLSDVRRFAEEMLNRRIL 238 (274)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 238 (274)
..... +++... ..++..+...++.++|...+.+..+..... +..++..+...|...|++++|...|++..+..
T Consensus 170 ~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 245 (275)
T 1xnf_A 170 HFEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-- 245 (275)
T ss_dssp HHHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--
Confidence 87653 334444 447777888889999999998887643211 25788889999999999999999999998864
Q ss_pred cCHHHHHHHHHHHHhcChh
Q 048737 239 IYDVTMQKLKKAFYNESRS 257 (274)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~ 257 (274)
|+. +.....++...|+.
T Consensus 246 p~~--~~~~~~~~~~l~~~ 262 (275)
T 1xnf_A 246 VHN--FVEHRYALLELSLL 262 (275)
T ss_dssp CTT--CHHHHHHHHHHHHH
T ss_pred chh--HHHHHHHHHHHHHH
Confidence 422 22224455555555
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=1.2e-17 Score=124.25 Aligned_cols=187 Identities=11% Similarity=-0.032 Sum_probs=154.5
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC----
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL---- 77 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 77 (274)
+.+.|++++|+..|++..+. .|+++.+|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...
T Consensus 15 ~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~ 90 (217)
T 2pl2_A 15 LYALGRYDAALTLFERALKE---NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQA 90 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHTT---SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhh
Confidence 45789999999999999765 89899999999999999999999999999998864 45678889999999999
Q ss_pred -------CChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048737 78 -------NDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 150 (274)
Q Consensus 78 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 150 (274)
|++++|...+++..+.. |.+...+..+..++...|++++|+..|++..+.. .+...+..+..+|...|
T Consensus 91 ~~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g 165 (217)
T 2pl2_A 91 EDRERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMG 165 (217)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHT
T ss_pred hhhcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcC
Confidence 99999999999999975 5568889999999999999999999999999876 68899999999999999
Q ss_pred CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048737 151 KVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYIL 198 (274)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (274)
++++|...|++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 166 ~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 166 RLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999998853 3356788889999999999999999987654
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.9e-17 Score=124.08 Aligned_cols=216 Identities=10% Similarity=0.026 Sum_probs=184.7
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCC--CCCC----HHHHHHHHHHHH
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN--CFPT----LKFFSNALDILV 75 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~l~~~~~ 75 (274)
|.+.|++++|++.|++..+. . + ++.+|..+...+...|++++|++.+++..+.. ..++ ..++..+...+.
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~-~--~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWEL-H--K-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH 90 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-S--C-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh-h--c-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH
Confidence 45689999999999999886 4 3 78899999999999999999999999988742 1122 578889999999
Q ss_pred hCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHH
Q 048737 76 KLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEV 155 (274)
Q Consensus 76 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 155 (274)
..|++++|...|+++.+.. |+. ..+.+.|++++|...++++.... +.+...+..+...+...|++++|
T Consensus 91 ~~~~~~~A~~~~~~a~~~~----~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 91 KLGDLKKTIEYYQKSLTEH----RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC----CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcccHHHHHHHHHHHHhcC----chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999854 553 35667788999999999998853 23567888999999999999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 156 ENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
...+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.
T Consensus 159 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 159 VKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999998754 34577899999999999999999999999998653 45788999999999999999999999998765
No 35
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=2.8e-15 Score=115.25 Aligned_cols=221 Identities=5% Similarity=-0.028 Sum_probs=111.2
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCChhhHHHHHHHHHhcCCccCccHHh
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK----LNDSTHTVQLWDIMVGIGFNLMPNLIM 103 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 103 (274)
++.++..+...+...|++++|++.|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHH
Confidence 4445555555555555555555555555542 233444455555555 555555555555555443 3444
Q ss_pred HHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCcchHH
Q 048737 104 YNAVVGLLCN----NNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK----NKKVHEVENFFHEMIKNEWQPTPLNCA 175 (274)
Q Consensus 104 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 175 (274)
+..+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 5555555555 555555555555555432 44455555555555 555555555555555433 333444
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCcchHHHHHHHHHhCCCccCHHHHHHH
Q 048737 176 TAITMLLD----ADEPEFAIEIWNYILENGILPLEASANVLLVGLRN----LGRLSDVRRFAEEMLNRRILIYDVTMQKL 247 (274)
Q Consensus 176 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 247 (274)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+. ...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHH
Confidence 44455544 555555555555555443 12344444555555 5555555555555554431 3344444
Q ss_pred HHHHHh----cChh--HHHHHHHHHHH
Q 048737 248 KKAFYN----ESRS--MRDRFDSLERR 268 (274)
Q Consensus 248 ~~~~~~----~g~~--a~~~~~~~~~~ 268 (274)
...+.. .++. |.+.+++..+.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 444444 4443 55555554443
No 36
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.77 E-value=2.6e-16 Score=126.30 Aligned_cols=222 Identities=11% Similarity=0.092 Sum_probs=151.4
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCc-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ-VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
.+.|++++|++.|++.... .|.+..+|+.+..++...|+ +++|+..|++.++.. +-+...|..+..++...|+++
T Consensus 108 ~~~g~~~~Al~~~~~al~l---~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~ 183 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAIEL---NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPS 183 (382)
T ss_dssp HHTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCT
T ss_pred HHCCChHHHHHHHHHHHHh---CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHH
Confidence 3457777777777777665 77777777777777777775 777777777777643 335667777777777777777
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHhHH-----
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK-NKKVHEV----- 155 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a----- 155 (274)
+|...|+++++.. +.+...|..+..++.+.|++++|+..|+++++... -+...|+.+..++.. .|..++|
T Consensus 184 eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 184 QELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp THHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 7877777777765 55677777777777777777777777777777532 256777777777777 4554666
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC---------Ccch
Q 048737 156 ENFFHEMIKNEWQPTPLNCATAITMLLDAD--EPEFAIEIWNYILENGILPLEASANVLLVGLRNLG---------RLSD 224 (274)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~ 224 (274)
+..+++.++.. +-+...|..+...+...| ++++|.+.+.++ +.. +.+...+..+...|.+.| ..++
T Consensus 260 l~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~ 336 (382)
T 2h6f_A 260 VQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNK 336 (382)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 46676666632 223456666676677666 577777777766 322 344566667777776653 2467
Q ss_pred HHHHHHHH-HhC
Q 048737 225 VRRFAEEM-LNR 235 (274)
Q Consensus 225 a~~~~~~m-~~~ 235 (274)
|.++|+++ .+.
T Consensus 337 A~~~~~~l~~~~ 348 (382)
T 2h6f_A 337 ALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 77777777 443
No 37
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.77 E-value=2.7e-16 Score=119.30 Aligned_cols=193 Identities=8% Similarity=0.002 Sum_probs=168.1
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|...|++++|.+.|+++.+. .|.+..+|..+...+...|++++|++.++++.+.. +.+...+..+...+...|+++
T Consensus 47 ~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 122 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEI---DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYE 122 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHH
Confidence 45679999999999999876 67788899999999999999999999999998753 456888999999999999999
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHE 161 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (274)
+|..+++++.+.+ ..+.+...+..+..++...|++++|...|++..+.. +.+...+..+...+...|++++|...+++
T Consensus 123 ~A~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 123 EAYQRLLEASQDT-LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHHHHTTCT-TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999998832 024467889999999999999999999999998864 23588899999999999999999999999
Q ss_pred HHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048737 162 MIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENG 201 (274)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (274)
+.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 201 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 201 FAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 98753 3456778888999999999999999999998864
No 38
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.4e-18 Score=138.95 Aligned_cols=217 Identities=8% Similarity=0.044 Sum_probs=67.3
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhH
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (274)
+.|++++|.+.++++. ++.+|..|+.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|
T Consensus 15 ~~~~ld~A~~fae~~~--------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN--------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHH
Confidence 4567788888887772 224788888888888888888888854 25677888888888888888888
Q ss_pred HHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 84 VQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
.++++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 81 i~yl~~ark~----~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 81 VKYLQMARKK----ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp --------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-
T ss_pred HHHHHHHHHh----CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 8877766653 3446677777788888888777776664 256667777777777777777777777755
Q ss_pred hCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHH
Q 048737 164 KNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVT 243 (274)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 243 (274)
..|..++.++.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.-
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~ 209 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADE 209 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhh
Confidence 36777777777777777777777766 2456777777777777777776443332 2222233
Q ss_pred HHHHHHHHHhcChh--HHHHHHHH
Q 048737 244 MQKLKKAFYNESRS--MRDRFDSL 265 (274)
Q Consensus 244 ~~~l~~~~~~~g~~--a~~~~~~~ 265 (274)
...++..|.+.|.. +..+++..
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44566666666665 44444443
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.77 E-value=6.7e-17 Score=121.79 Aligned_cols=202 Identities=8% Similarity=0.033 Sum_probs=159.0
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
.+..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l 97 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD---SSAATAYYGA 97 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CcchHHHHHH
Confidence 56678889999999999999999999998753 5568888999999999999999999999999875 5678889999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCh
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEP 187 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (274)
...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998764 3467889999999999999999999999988753 34567888899999999999
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 048737 188 EFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 236 (274)
++|...+++..+... .+..++..+...|...|++++|...++++.+..
T Consensus 176 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 176 DEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999988653 457788999999999999999999999998764
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.77 E-value=1.2e-16 Score=120.37 Aligned_cols=191 Identities=15% Similarity=0.148 Sum_probs=145.1
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
+.+.|++++|...|+++.+. .|.+..++..+...+...|++++|++.++++.+.. +.+...+..+...+...|+++
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 108 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEE---NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYK 108 (243)
T ss_dssp ---------CCTTHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHH
Confidence 45678888888888888665 67778888888888888888888888888887653 446777888888888888888
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHE 161 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (274)
+|...++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 109 ~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 109 EAKDMFEKALRAG---MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp HHHHHHHHHHHHT---CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888765 5567778888888888888888888888887653 23577788888888888888888888888
Q ss_pred HHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048737 162 MIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENG 201 (274)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (274)
+.+.. +.+..++..+..++...|++++|...++++.+..
T Consensus 185 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 185 VTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 87653 3346677888888888888888888888887754
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.76 E-value=3.1e-15 Score=114.99 Aligned_cols=213 Identities=10% Similarity=0.022 Sum_probs=188.0
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhc----cCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK- 76 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 76 (274)
|.+.|++++|++.|++..+. .++.++..+...+.. .+++++|++.|++..+.+ +...+..+...+..
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g 87 (273)
T 1ouv_A 16 SYKEKDFTQAKKYFEKACDL-----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSG 87 (273)
T ss_dssp HHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred HHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCC
Confidence 45678999999999998763 356788889999999 999999999999999875 78889999999999
Q ss_pred ---CCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh-
Q 048737 77 ---LNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCN----NNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK- 148 (274)
Q Consensus 77 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~- 148 (274)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 88 ~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 88 QGVSQNTNKALQYYSKACDLK-----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAG 159 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHHcC-----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcC
Confidence 999999999999999875 67788999999999 999999999999999865 66778888888888
Q ss_pred ---cCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh---
Q 048737 149 ---NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEFAIEIWNYILENGILPLEASANVLLVGLRN--- 218 (274)
Q Consensus 149 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 218 (274)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+. ...+..+...|..
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSS
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCC
Confidence 999999999999998864 45778889999999 9999999999999998753 5677888888988
Q ss_pred -cCCcchHHHHHHHHHhCC
Q 048737 219 -LGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 219 -~g~~~~a~~~~~~m~~~~ 236 (274)
.+++++|...|++..+.|
T Consensus 234 ~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHcC
Confidence 999999999999998875
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.76 E-value=7.4e-16 Score=123.70 Aligned_cols=234 Identities=11% Similarity=0.053 Sum_probs=197.2
Q ss_pred CCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-hhhHHHHHHHHHhcCCccCccH
Q 048737 23 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND-STHTVQLWDIMVGIGFNLMPNL 101 (274)
Q Consensus 23 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 101 (274)
.+.|.+..+|..+...+...|++++|++.+++.++.. +-+...|..+..++...|+ +++|...|+++++.. +.+.
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~---P~~~ 166 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---PKNY 166 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTCH
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---CCCH
Confidence 4567788899999999999999999999999999853 4467889999999999997 999999999999976 6678
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 048737 102 IMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITML 181 (274)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (274)
..|+.+..++.+.|++++|+..|+++++... -+...|..+..++...|++++|+..++++++.. +-+...|+.+..++
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 9999999999999999999999999998643 368899999999999999999999999999864 33567899999999
Q ss_pred Hh-cCChHHH-----HHHHHHHHHCCCCccHHHHHHHHHHHHhcC--CcchHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 048737 182 LD-ADEPEFA-----IEIWNYILENGILPLEASANVLLVGLRNLG--RLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYN 253 (274)
Q Consensus 182 ~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 253 (274)
.. .|..++| +..+++..+... -+...|+.+...+...| ++++|++.+.++ +. ...+...+..+...+.+
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHH
Confidence 99 6665777 488888887653 45678888888888888 689999999988 33 34567788888888888
Q ss_pred cC--------h-h--HHHHHHHH
Q 048737 254 ES--------R-S--MRDRFDSL 265 (274)
Q Consensus 254 ~g--------~-~--a~~~~~~~ 265 (274)
.| + . |.++++++
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHH
Confidence 64 2 2 77777776
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.75 E-value=8.9e-16 Score=114.11 Aligned_cols=194 Identities=9% Similarity=-0.008 Sum_probs=166.6
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC-CCh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL-NDS 80 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 80 (274)
|...|++++|.+.|+++.+. .|.+..+|..+...+...|++++|.+.++++.+.. +.+..++..+...+... |++
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 93 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKS---DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRP 93 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHhhHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcH
Confidence 45689999999999999876 77788899999999999999999999999998753 45688899999999999 999
Q ss_pred hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 048737 81 THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFH 160 (274)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (274)
++|...++++.+.+ ..+.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 94 ~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (225)
T 2vq2_A 94 AESMAYFDKALADP-TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFK 171 (225)
T ss_dssp HHHHHHHHHHHTST-TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999832 124457889999999999999999999999998863 2358889999999999999999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048737 161 EMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENG 201 (274)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (274)
+..+.....+...+..+...+...|+.+.|...++.+.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 172 KYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99875411456677888888899999999999999988654
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.74 E-value=2.3e-15 Score=115.38 Aligned_cols=237 Identities=6% Similarity=-0.060 Sum_probs=188.7
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHH
Q 048737 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVV 108 (274)
Q Consensus 29 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 108 (274)
+..+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++++.+...+.......|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3456678889999999999999999998863 345568888999999999999999999999984311111234589999
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChH
Q 048737 109 GLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPE 188 (274)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (274)
.++...|++++|...|++..+... .+..+|..+...|...|++++|...+++..+.. +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988642 367899999999999999999999999988752 334566677773455566999
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC---cchHHHHHHHHHhCC-CccC------HHHHHHHHHHHHhcChh-
Q 048737 189 FAIEIWNYILENGILPLEASANVLLVGLRNLGR---LSDVRRFAEEMLNRR-ILIY------DVTMQKLKKAFYNESRS- 257 (274)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~-~~~~------~~~~~~l~~~~~~~g~~- 257 (274)
+|...+++..+... .+...+..+...+...|+ +++|...+++..+.. -.|+ ...|..+...+...|+.
T Consensus 160 ~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999998653 446777888888888888 888999999987642 1233 25778888899999988
Q ss_pred -HHHHHHHHHHHh
Q 048737 258 -MRDRFDSLERRW 269 (274)
Q Consensus 258 -a~~~~~~~~~~~ 269 (274)
|.+.++++++..
T Consensus 239 ~A~~~~~~al~~~ 251 (272)
T 3u4t_A 239 KADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 999999888654
No 45
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=4.4e-15 Score=116.27 Aligned_cols=219 Identities=11% Similarity=0.049 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHhccCCCCchHhHHHHHHHHHhc-------cCcH-------HHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 048737 9 VEANKTFGEMVERFEWNPEHVLAYETFLITLIR-------GKQV-------DEALKFLRVMKGENCFPTLKFFSNALDIL 74 (274)
Q Consensus 9 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (274)
++|..+|++.... .|.++..|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+
T Consensus 33 ~~a~~~~~~al~~---~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 7888999999776 78889999999988864 4775 89999999999741233566899999999
Q ss_pred HhCCChhhHHHHHHHHHhcCCccCccHH-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCCH
Q 048737 75 VKLNDSTHTVQLWDIMVGIGFNLMPNLI-MYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI-KNKKV 152 (274)
Q Consensus 75 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~ 152 (274)
.+.|+++.|..+|+++++.. +.+.. +|..+...+.+.|++++|..+|++..+... ++...|........ ..|++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIE---DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSS---SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCH
T ss_pred HhcCCHHHHHHHHHHHHhcc---ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999854 22344 899999999999999999999999998642 34555554433322 36999
Q ss_pred hHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCc--cHHHHHHHHHHHHhcCCcchHHHHH
Q 048737 153 HEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENG-ILP--LEASANVLLVGLRNLGRLSDVRRFA 229 (274)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~ 229 (274)
++|..+|++.++.. +-+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+...|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998752 3356788899999999999999999999999863 445 4678899999999999999999999
Q ss_pred HHHHhC
Q 048737 230 EEMLNR 235 (274)
Q Consensus 230 ~~m~~~ 235 (274)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 46
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=8.3e-17 Score=128.84 Aligned_cols=217 Identities=12% Similarity=0.056 Sum_probs=109.8
Q ss_pred CcccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh
Q 048737 1 GWEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 80 (274)
Q Consensus 1 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (274)
++.+.|++++|++.|.+. + |...|..++..+...|++++|+++++..++. .+++.+.+.++.+|.+.|++
T Consensus 41 A~l~~g~~~eAIdsfika-------~-D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l 110 (449)
T 1b89_A 41 AQLQKGMVKEAIDSYIKA-------D-DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRL 110 (449)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred HHHHcCCHHHHHHHHHcC-------C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCH
Confidence 467889999999999642 2 6779999999999999999999987776663 45678899999999999999
Q ss_pred hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 048737 81 THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFH 160 (274)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (274)
+++.++++ .|+..+|+.+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+.
T Consensus 111 ~e~e~f~~---------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 111 AELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp HHHTTTTT---------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHc---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 99887773 367789999999999999999999999977 489999999999999999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccC
Q 048737 161 EMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240 (274)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 240 (274)
++ .++.+|..++.+|...|+++.|...... +..++.....++..|.+.|++++|..+++...... .-.
T Consensus 173 KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah 240 (449)
T 1b89_A 173 KA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAH 240 (449)
T ss_dssp HH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCC
T ss_pred Hc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHH
Confidence 88 3778999999999999999999665443 22333345578899999999999999999988765 456
Q ss_pred HHHHHHHHHHHHhcChh
Q 048737 241 DVTMQKLKKAFYNESRS 257 (274)
Q Consensus 241 ~~~~~~l~~~~~~~g~~ 257 (274)
...|+-|--++++-.-.
T Consensus 241 ~~~ftel~il~~ky~p~ 257 (449)
T 1b89_A 241 MGMFTELAILYSKFKPQ 257 (449)
T ss_dssp HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCHH
Confidence 67788887777776543
No 47
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=2e-16 Score=128.60 Aligned_cols=267 Identities=8% Similarity=-0.048 Sum_probs=205.5
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchH----hHHHHHHHHHhccCcHHHHHHHHHHHhcC----C-CCCCHHHHHHHHH
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHV----LAYETFLITLIRGKQVDEALKFLRVMKGE----N-CFPTLKFFSNALD 72 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~ 72 (274)
+...|++++|+..|++..+. .|.+. .+|..+...+...|++++|+..+++..+. + .+.....+..+..
T Consensus 58 ~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 58 LCNAGDCRAGVAFFQAAIQA---GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh---cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 45679999999999999876 56454 47888999999999999999999987653 1 1223467788889
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCc---cCccHHhHHHHHHHHHhcCC-----------------hhhHHHHHHHHHhc--
Q 048737 73 ILVKLNDSTHTVQLWDIMVGIGFN---LMPNLIMYNAVVGLLCNNND-----------------VDNVFRFFDQMVFH-- 130 (274)
Q Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~-- 130 (274)
.+...|++++|...++++.+.... .+....++..+...|...|+ +++|...+++..+.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998764100 12235678889999999999 99999999886542
Q ss_pred --CCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHCC-
Q 048737 131 --GAFP-DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEW-QPT----PLNCATAITMLLDADEPEFAIEIWNYILENG- 201 (274)
Q Consensus 131 --~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 201 (274)
+..+ ...++..+...|...|++++|...+++..+... .++ ...+..+...|...|++++|...+++..+..
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 1111 245788889999999999999999998875311 011 2377888999999999999999999887532
Q ss_pred ---C-CccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC-----CccCHHHHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 202 ---I-LPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR-----ILIYDVTMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 202 ---~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
. .....++..+...|...|++++|...+++..+.. ......++..+...+...|+. |.+.++++++..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 1 1124678888999999999999999999986531 112245788888999999988 9999998887654
Q ss_pred h
Q 048737 271 T 271 (274)
Q Consensus 271 ~ 271 (274)
.
T Consensus 375 ~ 375 (411)
T 4a1s_A 375 X 375 (411)
T ss_dssp H
T ss_pred h
Confidence 3
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.70 E-value=4.1e-15 Score=114.08 Aligned_cols=223 Identities=9% Similarity=-0.052 Sum_probs=182.3
Q ss_pred HHhccCcHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhc
Q 048737 38 TLIRGKQVDEALKFLRVMKGENCF---PTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNN 114 (274)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (274)
.+...|++++|++.|+++.+.... .+..++..+...+...|++++|...|+++.+.. +.+..+|..+..+|...
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHT
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHc
Confidence 445678999999999999986321 246678889999999999999999999999976 56788999999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 048737 115 NDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIW 194 (274)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 194 (274)
|++++|...|++..+.. +.+..++..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+
T Consensus 91 ~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999998863 236889999999999999999999999999884 466666666666667789999999999
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCcc---CHHHHHHHHHHHHhcChh--HHHHHHHHHHH
Q 048737 195 NYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILI---YDVTMQKLKKAFYNESRS--MRDRFDSLERR 268 (274)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 268 (274)
.+...... ++...+ .++..+...++.++|...+++..+..... +...+..+...+...|+. |.+.++++++.
T Consensus 168 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 168 KQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 88877542 344444 46777888888999999999987653221 257788899999999988 88888887754
No 49
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.70 E-value=1.2e-15 Score=126.37 Aligned_cols=212 Identities=12% Similarity=-0.007 Sum_probs=150.9
Q ss_pred hHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcH-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHH
Q 048737 8 VVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV-DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQL 86 (274)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 86 (274)
+++++..+++.... .|.+...|..+...+...|++ ++|++.|++..+.. +-+...|..+..+|...|++++|...
T Consensus 84 ~~~al~~l~~~~~~---~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGS---AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTT---CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhcc---CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55566666655443 566677777788888888888 88888888777643 33467777777888888888888888
Q ss_pred HHHHHhcCCccCccHHhHHHHHHHHHhc---------CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------
Q 048737 87 WDIMVGIGFNLMPNLIMYNAVVGLLCNN---------NDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN-------- 149 (274)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 149 (274)
|+++.+.. |+...+..+..++... |++++|+..|++..+.. +.+...|..+..+|...
T Consensus 160 ~~~al~~~----p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 160 FSGALTHC----KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHTTC----CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHhhC----CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcccc
Confidence 88887754 5567777777777777 78888888888777653 22467777777777777
Q ss_pred CCHhHHHHHHHHHHhCCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHH
Q 048737 150 KKVHEVENFFHEMIKNEWQ---PTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVR 226 (274)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 226 (274)
|++++|+..|++..+.. + .+...|..+..+|...|++++|...|++..+... .+...+..+...+...|++++|.
T Consensus 235 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 235 KISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888777642 1 2556777777778888888888888887776542 34556677777777777777777
Q ss_pred HHHH
Q 048737 227 RFAE 230 (274)
Q Consensus 227 ~~~~ 230 (274)
..+.
T Consensus 313 ~~~~ 316 (474)
T 4abn_A 313 ESKG 316 (474)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 6543
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.69 E-value=1.3e-15 Score=123.26 Aligned_cols=266 Identities=10% Similarity=-0.052 Sum_probs=203.0
Q ss_pred cccccchHHHHHHHHHHHhccCCCCch----HhHHHHHHHHHhccCcHHHHHHHHHHHhcC----CCCC-CHHHHHHHHH
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEH----VLAYETFLITLIRGKQVDEALKFLRVMKGE----NCFP-TLKFFSNALD 72 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 72 (274)
+.+.|++++|...|++..+. .|.+ ..+|..+...+...|++++|+..+++.... +-.| ...++..+..
T Consensus 19 ~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 95 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 95 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 45679999999999999875 5544 357888999999999999999999987542 2112 2457788889
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCc---cCccHHhHHHHHHHHHhcCC--------------------hhhHHHHHHHHHh
Q 048737 73 ILVKLNDSTHTVQLWDIMVGIGFN---LMPNLIMYNAVVGLLCNNND--------------------VDNVFRFFDQMVF 129 (274)
Q Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~ 129 (274)
.+...|+++.|...+++..+.... ......++..+...|...|+ +++|...+++...
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 175 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS 175 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999988764200 01124578889999999999 9999999987654
Q ss_pred c----CCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048737 130 H----GAFP-DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEW-QPT----PLNCATAITMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 130 ~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (274)
. +..| ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+
T Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 255 (406)
T 3sf4_A 176 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 255 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2 1111 245788889999999999999999998875311 112 23788889999999999999999998875
Q ss_pred C----CCCc-cHHHHHHHHHHHHhcCCcchHHHHHHHHHhC----CCc-cCHHHHHHHHHHHHhcChh--HHHHHHHHHH
Q 048737 200 N----GILP-LEASANVLLVGLRNLGRLSDVRRFAEEMLNR----RIL-IYDVTMQKLKKAFYNESRS--MRDRFDSLER 267 (274)
Q Consensus 200 ~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 267 (274)
. +..+ ...++..+...|...|++++|...+++..+. +.. ....++..+...+...|+. |.+.++++++
T Consensus 256 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 2111 1567888899999999999999999998653 111 1256778888899999988 9999988877
Q ss_pred Hhh
Q 048737 268 RWK 270 (274)
Q Consensus 268 ~~~ 270 (274)
..+
T Consensus 336 ~~~ 338 (406)
T 3sf4_A 336 ISR 338 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 51
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=1.8e-13 Score=107.13 Aligned_cols=235 Identities=9% Similarity=0.042 Sum_probs=185.1
Q ss_pred hHhHHHHHHHHHhcc----CcH----HHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-------hCCCh-------hhHHH
Q 048737 28 HVLAYETFLITLIRG----KQV----DEALKFLRVMKGENCFPTLKFFSNALDILV-------KLNDS-------THTVQ 85 (274)
Q Consensus 28 ~~~~~~~li~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~ 85 (274)
+...|...+....+. ++. ++|...|++.... .+-++..|..+...+. +.|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 455666666655443 233 7889999999875 3556788888887775 45886 89999
Q ss_pred HHHHHHhc-CCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hh-hHHHHHHHHHhcCCHhHHHHHHHHH
Q 048737 86 LWDIMVGI-GFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD-SL-TYNMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 86 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
+|++.++. . +.+...|..++..+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++.
T Consensus 86 ~~~rAl~~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 86 IYERAISTLL---KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHTTTT---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHhC---cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999984 4 446778999999999999999999999999984 454 33 8999999999999999999999999
Q ss_pred HhCCCCCCcchHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC-Ccc-
Q 048737 163 IKNEWQPTPLNCATAITMLL-DADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR-ILI- 239 (274)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~- 239 (274)
.+.. +++...|........ ..|+++.|..+|++..+... -+...|..++..+.+.|++++|..+|++..+.. +.|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 9854 334445544433322 36999999999999988542 467889999999999999999999999999873 455
Q ss_pred -CHHHHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 240 -YDVTMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 240 -~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
....|..++....+.|+. |..+++++++...
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 466788888888889987 8888888877654
No 52
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.68 E-value=6.5e-16 Score=121.62 Aligned_cols=267 Identities=10% Similarity=-0.039 Sum_probs=201.2
Q ss_pred cccccchHHHHHHHHHHHhccCCCCch----HhHHHHHHHHHhccCcHHHHHHHHHHHhcC----CCCC-CHHHHHHHHH
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEH----VLAYETFLITLIRGKQVDEALKFLRVMKGE----NCFP-TLKFFSNALD 72 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 72 (274)
+...|++++|...|++..+. .|.+ ...+..+...+...|++++|++.+++..+. +-.| ...++..+..
T Consensus 15 ~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 45689999999999999875 5545 467888999999999999999999987642 1111 2457788889
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCcc---CccHHhHHHHHHHHHhcCC--------------------hhhHHHHHHHHHh
Q 048737 73 ILVKLNDSTHTVQLWDIMVGIGFNL---MPNLIMYNAVVGLLCNNND--------------------VDNVFRFFDQMVF 129 (274)
Q Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~ 129 (274)
.+...|++++|...+++..+..... .....++..+...|...|+ +++|...+++...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987642000 1124478889999999999 9999999987654
Q ss_pred c----CCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048737 130 H----GAFP-DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEW-QPT----PLNCATAITMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 130 ~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (274)
. +..| ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 1111 245788888999999999999999998865310 111 23778888999999999999999998775
Q ss_pred C----CCCc-cHHHHHHHHHHHHhcCCcchHHHHHHHHHhC----C-CccCHHHHHHHHHHHHhcChh--HHHHHHHHHH
Q 048737 200 N----GILP-LEASANVLLVGLRNLGRLSDVRRFAEEMLNR----R-ILIYDVTMQKLKKAFYNESRS--MRDRFDSLER 267 (274)
Q Consensus 200 ~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~-~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 267 (274)
. +..+ ...++..+...|...|++++|...+++..+. + ......++..+...+...|+. |.+.++++++
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3 1111 1467788889999999999999999988653 1 112245777888999999988 9999998887
Q ss_pred Hhhh
Q 048737 268 RWKT 271 (274)
Q Consensus 268 ~~~~ 271 (274)
..+.
T Consensus 332 ~~~~ 335 (338)
T 3ro2_A 332 ISRE 335 (338)
T ss_dssp C---
T ss_pred HHHh
Confidence 6543
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=2.9e-14 Score=102.84 Aligned_cols=167 Identities=6% Similarity=-0.040 Sum_probs=115.6
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
++..|..+...+...|++++|++.|++..+.. +-+..++..+..++.+.|+++.|...+....... +.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---TTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---chhHHHHHHH
Confidence 45667777777777777777777777777643 3356677777777777777777777777777654 4456666666
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCh
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEP 187 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (274)
...+...++++.|...+.+..... +.+...+..+...|...|++++|++.|++..+.. +.+...+..+..+|.+.|++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 777777777777777777766642 2246667777777777777777777777776643 23455667777777777777
Q ss_pred HHHHHHHHHHHHC
Q 048737 188 EFAIEIWNYILEN 200 (274)
Q Consensus 188 ~~a~~~~~~~~~~ 200 (274)
++|...|++..+.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 7777777776664
No 54
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=6.7e-15 Score=114.81 Aligned_cols=245 Identities=9% Similarity=0.049 Sum_probs=175.4
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcC-------CCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcC---
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-------NCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIG--- 94 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 94 (274)
.|.+..++..+...+...|++++|+.+++++.+. ..+.....+..+...+...|++++|...++++....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4667888999999999999999999999998863 223345678888999999999999999999988641
Q ss_pred --CccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc------CCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 048737 95 --FNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH------GAFP-DSLTYNMIFECLIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 95 --~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (274)
.+.+....++..+...|...|++++|...+++..+. +..| ...++..+...+...|++++|..+++++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 001345678889999999999999999999988764 2222 3567888899999999999999999998764
Q ss_pred ------CCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHCC-------CCcc-------HHHHHHHHHHHHhcCCcch
Q 048737 166 ------EWQPT-PLNCATAITMLLDADEPEFAIEIWNYILENG-------ILPL-------EASANVLLVGLRNLGRLSD 224 (274)
Q Consensus 166 ------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~~g~~~~ 224 (274)
+..|+ ..++..+..++...|++++|...++++.+.. ..+. ...+..+...+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 11222 3467888999999999999999999887631 1111 2233333444556677777
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 225 VRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 225 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
+...++...... +.+..++..+..+|...|+. |.+.++++++..+
T Consensus 263 a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 263 YGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 777777776542 34567788899999999988 8899888877643
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.66 E-value=4.8e-14 Score=101.71 Aligned_cols=168 Identities=8% Similarity=0.024 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHH
Q 048737 62 PTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNM 141 (274)
Q Consensus 62 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (274)
-++..|..+...+...|++++|...|++.++.. |-+..++..+..+|.+.|++++|...+........ .+...+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 78 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD---PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYI 78 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHH
Confidence 367889999999999999999999999999976 56788999999999999999999999999887632 35778888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 048737 142 IFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGR 221 (274)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 221 (274)
+...+...++++.+...+.+..+.. +.+...+..+..++.+.|++++|...|++..+... .+..+|..+..+|.+.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCC
Confidence 8889999999999999999988753 34567888999999999999999999999998753 567889999999999999
Q ss_pred cchHHHHHHHHHhC
Q 048737 222 LSDVRRFAEEMLNR 235 (274)
Q Consensus 222 ~~~a~~~~~~m~~~ 235 (274)
+++|...|++.++.
T Consensus 157 ~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 157 RDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999876
No 56
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.63 E-value=6.3e-12 Score=104.64 Aligned_cols=240 Identities=13% Similarity=0.086 Sum_probs=145.8
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhc----cCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK---- 76 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 76 (274)
.+++++|.+.|++..+. | ++.++..+...|.. .+++++|+++|++..+.| ++..+..+...+..
T Consensus 164 ~~d~~~A~~~~~~a~~~-~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~ 235 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQ-G----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGV 235 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 34555555555555442 1 34455555555554 555666666665555443 34445555555554
Q ss_pred CCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---
Q 048737 77 LNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCN----NNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN--- 149 (274)
Q Consensus 77 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 149 (274)
.+++++|..+|++..+.+ +...+..+...|.. .+++++|...|++..+.| +...+..+...|...
T Consensus 236 ~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAEQG-----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp CCCHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTT
T ss_pred CCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCC
Confidence 556666666666665544 23344555555555 566666777666666543 344555566666655
Q ss_pred --CCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cC
Q 048737 150 --KKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDAD---EPEFAIEIWNYILENGILPLEASANVLLVGLRN----LG 220 (274)
Q Consensus 150 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 220 (274)
+++++|...|++..+.+ +...+..+...|...| ++++|...|++..+.+ +...+..+...|.. .+
T Consensus 308 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 381 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKK 381 (490)
T ss_dssp BCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 67777777777766654 3345556666666545 6677777777777653 34566677777777 67
Q ss_pred CcchHHHHHHHHHhCCCccCHHHHHHHHHHHHh----cChh--HHHHHHHHHHHh
Q 048737 221 RLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYN----ESRS--MRDRFDSLERRW 269 (274)
Q Consensus 221 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~--a~~~~~~~~~~~ 269 (274)
++++|...|++..+.+ +...+..|...|.. .++. |.+.++++.+..
T Consensus 382 ~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 382 DEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8888888888887765 45566667777766 5555 777777777655
No 57
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=2.3e-13 Score=112.55 Aligned_cols=257 Identities=9% Similarity=-0.044 Sum_probs=178.8
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHh---ccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----C
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLI---RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK----L 77 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 77 (274)
.+++++|++.|++..+. .|+++..+..+..++. ..++.++|++.+++..+.. +.+..++..+...+.. .
T Consensus 151 ~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~ 226 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEG 226 (472)
T ss_dssp TTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC---
T ss_pred cccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhh
Confidence 35789999999999775 8888888877776643 4567788999998888753 3456666666555544 4
Q ss_pred CChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------
Q 048737 78 NDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN-------- 149 (274)
Q Consensus 78 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 149 (274)
++++.|.+.+++..... +.+..++..+...|...|++++|...+++..+..+ -+..++..+...|...
T Consensus 227 ~~~~~a~~~~~~al~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~ 302 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKA---PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQVMNLR 302 (472)
T ss_dssp ---CHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHH
Confidence 67889999999998875 66788899999999999999999999999988632 2466676666655432
Q ss_pred -----------CCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHH--HHHHHHH-H
Q 048737 150 -----------KKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEA--SANVLLV-G 215 (274)
Q Consensus 150 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~ 215 (274)
+.++.|...+++..+.. +.+...+..+...+...|++++|...|++..+....|... .+..+.. .
T Consensus 303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~ 381 (472)
T 4g1t_A 303 ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381 (472)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 23567778888777653 4456788999999999999999999999999876544321 2233332 2
Q ss_pred HHhcCCcchHHHHHHHHHhCC-----------------------CccCHHHHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 216 LRNLGRLSDVRRFAEEMLNRR-----------------------ILIYDVTMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 216 ~~~~g~~~~a~~~~~~m~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
+...|++++|+..|++..+.. -+.+..+|..+...+...|+. |.+.++++++...
T Consensus 382 ~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 382 LYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 457799999999988876542 133456788888899999988 9999999887654
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.62 E-value=3.8e-14 Score=117.48 Aligned_cols=206 Identities=9% Similarity=-0.027 Sum_probs=175.3
Q ss_pred cHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh-hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHH
Q 048737 44 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS-THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFR 122 (274)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 122 (274)
.+++++..+++.... .+.+...+..+...+...|++ ++|...|+++.+.. +.+...|..+..+|.+.|++++|..
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 366777788776654 245788899999999999999 99999999999976 5568899999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhc---------CCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc--------C
Q 048737 123 FFDQMVFHGAFPDSLTYNMIFECLIKN---------KKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDA--------D 185 (274)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~ 185 (274)
.|++..+. .|+...+..+...|... |++++|+..+++..+.. +.+...|..+..+|... |
T Consensus 159 ~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 99999985 47788899999999999 99999999999998854 33567889999999988 9
Q ss_pred ChHHHHHHHHHHHHCCCC--ccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh
Q 048737 186 EPEFAIEIWNYILENGIL--PLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS 257 (274)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 257 (274)
++++|...|++..+.... -+...|..+..+|...|++++|...|++..+.. +-+...+..+...+...|+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 999999999999986421 367889999999999999999999999998764 23556777787888877766
No 59
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.62 E-value=8.5e-12 Score=103.86 Aligned_cols=209 Identities=9% Similarity=0.028 Sum_probs=120.9
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhc----cCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK---- 76 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 76 (274)
.+++++|...|++..+. | ++.++..|...|.. .+++++|+++|++..+.| ++..+..|...|..
T Consensus 56 ~~~~~~A~~~~~~a~~~-~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ-G----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CcCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 46677777777766553 2 44566666666666 667777777777766544 45555556666665
Q ss_pred CCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----
Q 048737 77 LNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCN----NNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK---- 148 (274)
Q Consensus 77 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 148 (274)
.+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|..
T Consensus 128 ~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 199 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG-----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGV 199 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCC
Confidence 566777777777766655 34455555566655 556666666666666542 45555566666655
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cC
Q 048737 149 NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEFAIEIWNYILENGILPLEASANVLLVGLRN----LG 220 (274)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 220 (274)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+. ...+..+...|.. .+
T Consensus 200 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN---SIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTTTSSC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHCCCCCCC
Confidence 566666666666665543 33444455555544 4555555555555554432 2333344444444 45
Q ss_pred CcchHHHHHHHHHhC
Q 048737 221 RLSDVRRFAEEMLNR 235 (274)
Q Consensus 221 ~~~~a~~~~~~m~~~ 235 (274)
++++|...|++..+.
T Consensus 274 d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQ 288 (490)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHc
Confidence 555555555555444
No 60
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.61 E-value=6.4e-14 Score=120.95 Aligned_cols=170 Identities=11% Similarity=0.040 Sum_probs=149.1
Q ss_pred CCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHH
Q 048737 23 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLI 102 (274)
Q Consensus 23 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 102 (274)
|-.|+++.+|+.|...+.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...|+++++.. +-+..
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~~~~ 78 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFAD 78 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH
Confidence 4578889999999999999999999999999998853 3457899999999999999999999999999975 55688
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-cchHHHHHHHH
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT-PLNCATAITML 181 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 181 (274)
.|..+..+|.+.|++++|++.|++..+... -+...|+.+...|...|++++|+..|++.++. .|+ ...+..+..++
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHH
Confidence 999999999999999999999999988632 25789999999999999999999999999885 354 67889999999
Q ss_pred HhcCChHHHHHHHHHHHH
Q 048737 182 LDADEPEFAIEIWNYILE 199 (274)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~ 199 (274)
...|++++|.+.+++..+
T Consensus 156 ~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHTTCCTTHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 999999999998888764
No 61
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.61 E-value=2.5e-13 Score=97.52 Aligned_cols=167 Identities=9% Similarity=-0.066 Sum_probs=127.9
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
....|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++.|...++++.+.. +.+..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ 82 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---PDNVKVATVL 82 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHH
Confidence 35567778888888888999988888887653 4467778888888888888888888888888764 5567778888
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCh
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEP 187 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (274)
...+...|++++|...++++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCH
Confidence 888888888888888888877653 3356777777788888888888888888877653 33456677777777778888
Q ss_pred HHHHHHHHHHHHC
Q 048737 188 EFAIEIWNYILEN 200 (274)
Q Consensus 188 ~~a~~~~~~~~~~ 200 (274)
++|...+++..+.
T Consensus 161 ~~A~~~~~~~~~~ 173 (186)
T 3as5_A 161 EEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 8888877777653
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=1.7e-13 Score=110.49 Aligned_cols=234 Identities=10% Similarity=0.030 Sum_probs=177.5
Q ss_pred HHHHHhccCcHHHHHHHHHHHhcCC-CCCC----HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCcc----CccHHhHH
Q 048737 35 FLITLIRGKQVDEALKFLRVMKGEN-CFPT----LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNL----MPNLIMYN 105 (274)
Q Consensus 35 li~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~ 105 (274)
....+...|++++|+..|++..+.- ..++ ..++..+...+...|+++.|...+++..+..... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 6677889999999999999997631 1122 4578888999999999999999999988642101 11245788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCCHhHHHHHHHHHHhC----CC-CCCcchHH
Q 048737 106 AVVGLLCNNNDVDNVFRFFDQMVFHGAF-PD----SLTYNMIFECLIKNKKVHEVENFFHEMIKN----EW-QPTPLNCA 175 (274)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 175 (274)
.+..+|...|++++|...|++..+.... ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999987653111 11 247888999999999999999999998762 22 23356788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----CCCccHHHHHHHHHHHHhcCC---cchHHHHHHHHHhCCCcc-CHHHHHHH
Q 048737 176 TAITMLLDADEPEFAIEIWNYILEN----GILPLEASANVLLVGLRNLGR---LSDVRRFAEEMLNRRILI-YDVTMQKL 247 (274)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~~-~~~~~~~l 247 (274)
.+...+.+.|++++|...+++..+. +-+.....+..+...|...|+ +++|+.++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 9999999999999999999988753 222223345667788888898 77777777765 3333 34567778
Q ss_pred HHHHHhcChh--HHHHHHHHHHHhhh
Q 048737 248 KKAFYNESRS--MRDRFDSLERRWKT 271 (274)
Q Consensus 248 ~~~~~~~g~~--a~~~~~~~~~~~~~ 271 (274)
...|...|+. |.+.++++++..+.
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 8999999988 99999988876553
No 63
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.59 E-value=7.7e-14 Score=107.11 Aligned_cols=232 Identities=12% Similarity=0.027 Sum_probs=160.9
Q ss_pred ccccchHHHHHHHHHHHhc----cC-CCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcC------CC-CCCHHHHHHH
Q 048737 3 EKEGNVVEANKTFGEMVER----FE-WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE------NC-FPTLKFFSNA 70 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~----~~-~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 70 (274)
...|++++|+..|++..+. .+ -.|....++..+...+...|++++|+..+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3457777777777766542 11 23657888999999999999999999999988753 21 2235678889
Q ss_pred HHHHHhCCChhhHHHHHHHHHhcC-----CccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc------CCCC-Chhh
Q 048737 71 LDILVKLNDSTHTVQLWDIMVGIG-----FNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH------GAFP-DSLT 138 (274)
Q Consensus 71 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 138 (274)
...+...|++++|...++++.+.. .+.+....++..+...|...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999988651 001345778889999999999999999999988764 1123 3567
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhC-------CCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHHH----C--CCCc
Q 048737 139 YNMIFECLIKNKKVHEVENFFHEMIKN-------EWQPTP-LNCATAITMLLDADEPEFAIEIWNYILE----N--GILP 204 (274)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~--~~~~ 204 (274)
+..+...|...|++++|..++++..+. ...+.. ..+..+...+...+....+.. +..... . ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence 888999999999999999999988753 123333 334444444433333322222 211111 1 1123
Q ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 205 LEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 205 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
...++..+...|...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3466788888999999999999999887653
No 64
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=1.5e-12 Score=109.51 Aligned_cols=219 Identities=11% Similarity=0.044 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHhccCCCCchHhHHHHHHHHHhc-------cCcHH-------HHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 048737 9 VEANKTFGEMVERFEWNPEHVLAYETFLITLIR-------GKQVD-------EALKFLRVMKGENCFPTLKFFSNALDIL 74 (274)
Q Consensus 9 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (274)
.+|..+|++.... .|.++..|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+
T Consensus 255 ~~a~~~y~~al~~---~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~ 331 (530)
T 2ooe_A 255 KRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 331 (530)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3677888888776 78788999999998876 68887 8999999998632344688899999999
Q ss_pred HhCCChhhHHHHHHHHHhcCCccCcc-HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCH
Q 048737 75 VKLNDSTHTVQLWDIMVGIGFNLMPN-LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC-LIKNKKV 152 (274)
Q Consensus 75 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~ 152 (274)
.+.|+++.|..+|+++.+.. +.+ ...|..++..+.+.|++++|.++|++..+.. +.+...|...... +...|++
T Consensus 332 ~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~ 407 (530)
T 2ooe_A 332 ESRMKYEKVHSIYNRLLAIE---DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDK 407 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHSS---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCH
T ss_pred HhcCCHHHHHHHHHHHhCcc---ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCCh
Confidence 99999999999999999854 223 3589999999999999999999999998752 2233333332222 3468999
Q ss_pred hHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-Ccc--HHHHHHHHHHHHhcCCcchHHHHH
Q 048737 153 HEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI-LPL--EASANVLLVGLRNLGRLSDVRRFA 229 (274)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 229 (274)
++|..+|+..++.. +.+...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+..++
T Consensus 408 ~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 408 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988753 23567888999999999999999999999998642 232 457888888888999999999999
Q ss_pred HHHHhC
Q 048737 230 EEMLNR 235 (274)
Q Consensus 230 ~~m~~~ 235 (274)
.++.+.
T Consensus 487 ~r~~~~ 492 (530)
T 2ooe_A 487 KRRFTA 492 (530)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.58 E-value=1.6e-13 Score=110.56 Aligned_cols=230 Identities=8% Similarity=-0.030 Sum_probs=173.5
Q ss_pred cccccchHHHHHHHHHHHhccCC---CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCC-CCC-----CHHHHHHHHH
Q 048737 2 WEKEGNVVEANKTFGEMVERFEW---NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN-CFP-----TLKFFSNALD 72 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~-----~~~~~~~l~~ 72 (274)
+...|++++|.+.|++......- .|....+|..+...+...|++++|+..+.+..+.- -.+ ...+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34679999999999998653111 22245789999999999999999999999887521 111 1357888889
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCc---cCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc----CC-CCChhhHHHHHH
Q 048737 73 ILVKLNDSTHTVQLWDIMVGIGFN---LMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH----GA-FPDSLTYNMIFE 144 (274)
Q Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~ 144 (274)
.|...|++++|...+++..+.... .+....++..+..+|...|++++|...+++..+. +. +....++..+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 999999999999999998864200 0112357889999999999999999999998762 22 334678899999
Q ss_pred HHHhcCCHhHHHHHHHHHHhC----CCCCCcchHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCcc-HHHHHHHHHHH
Q 048737 145 CLIKNKKVHEVENFFHEMIKN----EWQPTPLNCATAITMLLDADE---PEFAIEIWNYILENGILPL-EASANVLLVGL 216 (274)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 216 (274)
.|...|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++. +..|+ ...+..+...|
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHH
Confidence 999999999999999988753 111112335677788888898 66666666654 33333 45677888999
Q ss_pred HhcCCcchHHHHHHHHHh
Q 048737 217 RNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 217 ~~~g~~~~a~~~~~~m~~ 234 (274)
...|++++|...+++..+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999998865
No 66
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=1.1e-11 Score=104.29 Aligned_cols=77 Identities=13% Similarity=0.184 Sum_probs=59.8
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-HhCCChhh
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL-VKLNDSTH 82 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 82 (274)
+.|++++|..+|+++.+. .|.+...|..++..+.+.|++++|..+|+++... .|+...|...+... ...|+.+.
T Consensus 24 ~~~~~~~a~~~~e~al~~---~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~ 98 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVAQ---FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPS 98 (530)
T ss_dssp HSSCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTT
T ss_pred HhCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhh
Confidence 468999999999999776 8888999999999999999999999999999875 36766666555322 23445544
Q ss_pred HHH
Q 048737 83 TVQ 85 (274)
Q Consensus 83 a~~ 85 (274)
|.+
T Consensus 99 a~~ 101 (530)
T 2ooe_A 99 YKE 101 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=1.5e-13 Score=107.09 Aligned_cols=171 Identities=14% Similarity=0.077 Sum_probs=139.5
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHhc-------CCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-----
Q 048737 63 TLKFFSNALDILVKLNDSTHTVQLWDIMVGI-------GFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH----- 130 (274)
Q Consensus 63 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 130 (274)
+..++..+...+...|++++|..+++++.+. . .+....++..+...|...|++++|...+++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD--HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS--SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 3567888899999999999999999999873 2 2445778899999999999999999999988764
Q ss_pred -CC-CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHC-
Q 048737 131 -GA-FPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN------EWQP-TPLNCATAITMLLDADEPEFAIEIWNYILEN- 200 (274)
Q Consensus 131 -~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 200 (274)
+- +....++..+...|...|++++|...+++..+. +..| ....+..+...+...|++++|...+++..+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 21 223677889999999999999999999998764 2122 3456788899999999999999999998764
Q ss_pred -----CCCc-cHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 201 -----GILP-LEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 201 -----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
+..| ...++..+...|...|++++|...++++.+.
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2123 3467888999999999999999999998763
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.56 E-value=6.6e-13 Score=95.28 Aligned_cols=166 Identities=7% Similarity=-0.031 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 048737 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIF 143 (274)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 143 (274)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 83 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD---AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 3456777888889999999999999988765 5577888899999999999999999999988763 34678888888
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcc
Q 048737 144 ECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLS 223 (274)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 223 (274)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999988753 3456778888889999999999999999988765 345678888899999999999
Q ss_pred hHHHHHHHHHhC
Q 048737 224 DVRRFAEEMLNR 235 (274)
Q Consensus 224 ~a~~~~~~m~~~ 235 (274)
+|...+++..+.
T Consensus 162 ~A~~~~~~~~~~ 173 (186)
T 3as5_A 162 EALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999988764
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.56 E-value=1.3e-12 Score=97.49 Aligned_cols=197 Identities=5% Similarity=-0.072 Sum_probs=154.5
Q ss_pred CchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHH
Q 048737 26 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYN 105 (274)
Q Consensus 26 p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (274)
|.++..|......+...|++++|+..|++..+..-+++...+..+..++...|++++|...+++..+.. +.+..+|.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~ 80 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN---YNLANAYI 80 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CSHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC---cchHHHHH
Confidence 446788999999999999999999999999986533788888889999999999999999999999876 55788899
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC---cchHH
Q 048737 106 AVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS-------LTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT---PLNCA 175 (274)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 175 (274)
.+..+|...|++++|...|++..+... .+. ..|..+...+...|++++|+..|++.++. .|+ ...+.
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~ 157 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALY 157 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHH
Confidence 999999999999999999999988532 234 45888888899999999999999999875 454 45666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 048737 176 TAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 236 (274)
.+..+|...| ..+++++...+. .+...|.... ....+.+++|...+++..+..
T Consensus 158 ~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 158 SLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 7777775543 444555555432 3334444433 334567899999999998763
No 70
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=3.2e-13 Score=109.66 Aligned_cols=242 Identities=10% Similarity=0.004 Sum_probs=185.6
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhCCChhhHHHHHHHHHhcCC---ccCcc
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL----KFFSNALDILVKLNDSTHTVQLWDIMVGIGF---NLMPN 100 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ 100 (274)
....+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...+++..+... +.+..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 44556677888999999999999999998853 2233 4788888999999999999999999876410 01334
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcC----CC-CChhhHHHHHHHHHhcCC-----------------HhHHHHH
Q 048737 101 LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHG----AF-PDSLTYNMIFECLIKNKK-----------------VHEVENF 158 (274)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~~~-----------------~~~a~~~ 158 (274)
..++..+...|...|++++|...+++..+.. -. ....++..+...|...|+ +++|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 6778899999999999999999999876531 11 235578889999999999 9999999
Q ss_pred HHHHHhC----CCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CccHHHHHHHHHHHHhcCCcchHHHH
Q 048737 159 FHEMIKN----EWQP-TPLNCATAITMLLDADEPEFAIEIWNYILENGI-----LPLEASANVLLVGLRNLGRLSDVRRF 228 (274)
Q Consensus 159 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~ 228 (274)
+.+..+. +..+ ...++..+...+...|++++|...+++..+... .....++..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9887542 1111 234778888999999999999999998876321 11123788889999999999999999
Q ss_pred HHHHHhCCC-----ccCHHHHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 229 AEEMLNRRI-----LIYDVTMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 229 ~~~m~~~~~-----~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
+++..+... .....++..+...+...|+. |.+.++++++...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 998865311 11256788888999999988 8888888877644
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.54 E-value=1.1e-12 Score=113.32 Aligned_cols=166 Identities=10% Similarity=0.064 Sum_probs=147.2
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 048737 63 TLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMI 142 (274)
Q Consensus 63 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (274)
+...|+.|...+.+.|++++|.+.|++.++.. +-+..+|+.+..+|.+.|++++|++.|++..+... -+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~---P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 46789999999999999999999999999975 55688999999999999999999999999988632 257899999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCc
Q 048737 143 FECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRL 222 (274)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 222 (274)
..+|...|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..|++..+... -+...+..+..+|...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccH
Confidence 999999999999999999998853 23467899999999999999999999999998653 4567899999999999999
Q ss_pred chHHHHHHHHHh
Q 048737 223 SDVRRFAEEMLN 234 (274)
Q Consensus 223 ~~a~~~~~~m~~ 234 (274)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888764
No 72
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=1.3e-13 Score=111.59 Aligned_cols=256 Identities=11% Similarity=-0.029 Sum_probs=189.5
Q ss_pred cccccchHHHHHHHHHHHhc---cCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCC-CCC----HHHHHHHHHH
Q 048737 2 WEKEGNVVEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC-FPT----LKFFSNALDI 73 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~ 73 (274)
|...|++++|...|++.... .+-.|....++..+...+...|++++|+..+++..+... .++ ..++..+...
T Consensus 57 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 57 YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 136 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 45679999999999876432 233444577889999999999999999999998875310 112 4477888889
Q ss_pred HHhCCC--------------------hhhHHHHHHHHHhcCC---ccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 74 LVKLND--------------------STHTVQLWDIMVGIGF---NLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 74 ~~~~~~--------------------~~~a~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
+...|+ ++.|...+++...... +.+....++..+...|...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999 9999999988765310 01223457888999999999999999999987653
Q ss_pred CC-CCC----hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048737 131 GA-FPD----SLTYNMIFECLIKNKKVHEVENFFHEMIKNEW-QPT----PLNCATAITMLLDADEPEFAIEIWNYILEN 200 (274)
Q Consensus 131 ~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (274)
.. .++ ..++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 11 112 34788899999999999999999998865310 111 457788899999999999999999988753
Q ss_pred ----CCCc-cHHHHHHHHHHHHhcCCcchHHHHHHHHHhC----CC-ccCHHHHHHHHHHHHhcChh
Q 048737 201 ----GILP-LEASANVLLVGLRNLGRLSDVRRFAEEMLNR----RI-LIYDVTMQKLKKAFYNESRS 257 (274)
Q Consensus 201 ----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~~ 257 (274)
+..+ ...++..+...|...|++++|...+++..+. +. .....++..+...+...|+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 1111 1457788889999999999999999987653 22 22345666677777776654
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.53 E-value=8.5e-12 Score=100.06 Aligned_cols=266 Identities=11% Similarity=0.044 Sum_probs=188.8
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchH----hHHHHHHHHHhccCcHHHHHHHHHHHhcCC-CCCCH----HHHHHHHHH
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHV----LAYETFLITLIRGKQVDEALKFLRVMKGEN-CFPTL----KFFSNALDI 73 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~l~~~ 73 (274)
...|++++|...+++..... .+.+. .+++.+...+...|++++|...+++..+.. -.++. .++..+...
T Consensus 25 ~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 45799999999999987642 12122 256677788899999999999999876521 01222 335667788
Q ss_pred HHhCCChhhHHHHHHHHHhcCCc--cC--c-cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--C--ChhhHHHHHH
Q 048737 74 LVKLNDSTHTVQLWDIMVGIGFN--LM--P-NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAF--P--DSLTYNMIFE 144 (274)
Q Consensus 74 ~~~~~~~~~a~~~~~~~~~~~~~--~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~li~ 144 (274)
+...|+++.|...+++..+.... .+ | ....+..+...+...|++++|...+++....... + ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 89999999999999988764200 11 2 3456677888999999999999999988764221 1 2356778888
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCc-chHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCc---cHHHHHHHHHH
Q 048737 145 CLIKNKKVHEVENFFHEMIKNEWQPTP-LNCA-----TAITMLLDADEPEFAIEIWNYILENGILP---LEASANVLLVG 215 (274)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~ 215 (274)
.+...|++++|...+++.......++. ..+. ..+..+...|+++.|...+++.......+ ....+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 899999999999999998754212221 1222 23344778999999999998877643211 12356677888
Q ss_pred HHhcCCcchHHHHHHHHHhC----CCccCH-HHHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 216 LRNLGRLSDVRRFAEEMLNR----RILIYD-VTMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 216 ~~~~g~~~~a~~~~~~m~~~----~~~~~~-~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
+...|++++|...+++.... |..++. ..+..+..++...|+. |...++..++...
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999999999999987543 322233 3666677788888887 8888888776543
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.52 E-value=2.2e-12 Score=103.81 Aligned_cols=238 Identities=9% Similarity=0.003 Sum_probs=138.0
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCC-CCCC----HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCc---cCc
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGEN-CFPT----LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFN---LMP 99 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~ 99 (274)
....|......+...|++++|+..|++..+.. ..++ ..++..+...+...|+++.|...+++..+.... ..+
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 44455566667777777777777777765531 1122 345666667777777777777777666543100 011
Q ss_pred -cHHhHHHHHHHHHhcCChhhHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCC
Q 048737 100 -NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH----GAFP-DSLTYNMIFECLIKNKKVHEVENFFHEMIK-----NEWQ 168 (274)
Q Consensus 100 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~ 168 (274)
...+++.+..+|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|...+++..+ .. +
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~ 258 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-D 258 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-G
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-h
Confidence 2445666777777777777777777665432 2111 234566677777777777777777776655 22 2
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCccHHHHHHHHHHHHhcCC---cchHHHHHHHHHhCCCcc-C
Q 048737 169 PTPLNCATAITMLLDADEPEFAIEIWNYILENG----ILPLEASANVLLVGLRNLGR---LSDVRRFAEEMLNRRILI-Y 240 (274)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~~-~ 240 (274)
....++..+...+.+.|++++|...+++..+.. -+.....+..+...|...++ +++|+..+++ .+..| .
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~ 335 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYI 335 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHH
Confidence 224556666777777777777777777666531 11223344445555555666 5555555554 22222 2
Q ss_pred HHHHHHHHHHHHhcChh--HHHHHHHHHHHh
Q 048737 241 DVTMQKLKKAFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 241 ~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 269 (274)
...+..+...|...|+. |.+.++++++..
T Consensus 336 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 23455566667777766 666666665543
No 75
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=1e-11 Score=102.59 Aligned_cols=261 Identities=11% Similarity=0.028 Sum_probs=156.4
Q ss_pred ccccchHHHHHHHHHHHhc------cCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcC-----C-CC-CCHHHHHH
Q 048737 3 EKEGNVVEANKTFGEMVER------FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-----N-CF-PTLKFFSN 69 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~------~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~-~~~~~~~~ 69 (274)
...|++++|++.|++..+- ....|....+|+.+..+|...|++++|...+++..+. + .. ....++..
T Consensus 62 ~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~ 141 (472)
T 4g1t_A 62 HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHH
Confidence 4578999999999875431 1124556778999999999999999999999877541 1 11 23456666
Q ss_pred HHHHHHh--CCChhhHHHHHHHHHhcCCccCccHHhHHHHHHH---HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 048737 70 ALDILVK--LNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGL---LCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 144 (274)
Q Consensus 70 l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 144 (274)
+..++.. .+++++|...|++..+.. |.+...+..+..+ +...++.++|++.+++..+... .+..++..+..
T Consensus 142 ~g~~~~~~~~~~y~~A~~~~~kal~~~---p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~ 217 (472)
T 4g1t_A 142 EGWTRLKCGGNQNERAKVCFEKALEKK---PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLAL 217 (472)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHH
Confidence 5555544 356889999999988865 3344555544444 3344666777777776665421 23444444444
Q ss_pred HHHh----cCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC------------------
Q 048737 145 CLIK----NKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI------------------ 202 (274)
Q Consensus 145 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------ 202 (274)
.+.. .+++++|.+.+++..... +.+...+..+...|...|++++|...+.+..+...
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 218 KLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp HHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 3333 345566666666665532 23344566666666666666666666666554321
Q ss_pred ----------------------------------CccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHH--HHHH
Q 048737 203 ----------------------------------LPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDV--TMQK 246 (274)
Q Consensus 203 ----------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~ 246 (274)
+.+..++..+...|...|++++|...|++..+....|... .+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~ 376 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 1222345556667777888888888888887764433221 1222
Q ss_pred HHH-HHHhcChh--HHHHHHHHHHH
Q 048737 247 LKK-AFYNESRS--MRDRFDSLERR 268 (274)
Q Consensus 247 l~~-~~~~~g~~--a~~~~~~~~~~ 268 (274)
+.. .....|+. |...+.++++.
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 222 22345555 77777776654
No 76
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=2e-12 Score=101.58 Aligned_cols=242 Identities=8% Similarity=-0.045 Sum_probs=182.9
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCC---ccCcc
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT----LKFFSNALDILVKLNDSTHTVQLWDIMVGIGF---NLMPN 100 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ 100 (274)
+...+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|...+++...... +.+..
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 34456677888999999999999999998853 223 36778889999999999999999998765310 01223
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHhcCC--------------------HhHH
Q 048737 101 LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGA-FPD----SLTYNMIFECLIKNKK--------------------VHEV 155 (274)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~--------------------~~~a 155 (274)
..++..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 66788899999999999999999998765311 112 3478888899999999 9999
Q ss_pred HHHHHHHHhC----CCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CccHHHHHHHHHHHHhcCCcchH
Q 048737 156 ENFFHEMIKN----EWQP-TPLNCATAITMLLDADEPEFAIEIWNYILEN----GI-LPLEASANVLLVGLRNLGRLSDV 225 (274)
Q Consensus 156 ~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a 225 (274)
...+++..+. +..+ ....+..+...+...|++++|...+++..+. +. .....++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999887542 1111 1346778889999999999999999988753 11 11234788888999999999999
Q ss_pred HHHHHHHHhC----CCcc-CHHHHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 226 RRFAEEMLNR----RILI-YDVTMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 226 ~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
...+++..+. +..+ ...++..+...+...|+. |.+.++++++...
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9999987653 1111 156777888899999988 8888888876644
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.50 E-value=7.9e-12 Score=93.20 Aligned_cols=193 Identities=11% Similarity=-0.045 Sum_probs=145.5
Q ss_pred CCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHH
Q 048737 61 FPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYN 140 (274)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (274)
+.|+..+......+...|++++|...|++..+.. .+++...+..+..++.+.|++++|+..|++..+... .+...|.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 80 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYI 80 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHH
Confidence 3567888899999999999999999999999976 227788888899999999999999999999988632 2577899
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-c-------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcc---HHHH
Q 048737 141 MIFECLIKNKKVHEVENFFHEMIKNEWQPT-P-------LNCATAITMLLDADEPEFAIEIWNYILENGILPL---EASA 209 (274)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 209 (274)
.+...|...|++++|...+++..+.. |+ . ..|..+...+...|++++|...|++..+.. |+ ...+
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 156 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDAL 156 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHH
Confidence 99999999999999999999998753 44 3 357778888999999999999999998864 44 5677
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHH
Q 048737 210 NVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLERR 268 (274)
Q Consensus 210 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 268 (274)
..+..+|...|+ .+++++...+ ..+...|....... .+.. |...++++++.
T Consensus 157 ~~l~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~~~~--~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 157 YSLGVLFYNNGA-----DVLRKATPLA-SSNKEKYASEKAKA--DAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHHHHH--HHHHHHHHHHHHHHhhc
Confidence 777777765543 3445554443 22344444433222 2222 66666666543
No 78
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.48 E-value=3.9e-11 Score=107.54 Aligned_cols=201 Identities=9% Similarity=0.052 Sum_probs=147.3
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
++.+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.+++....+.. ++....+.+
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~----~e~~Idt~L 1173 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETEL 1173 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ccccccHHH
Confidence 5668888999999999999999998653 467788889999999999999999998877753 343344458
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCh
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEP 187 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (274)
+.+|++.+++++...+. . .|+...|..+...|...|++++|..+|... ..|..+..++.+.|++
T Consensus 1174 afaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~ 1237 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEY 1237 (1630)
T ss_pred HHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCH
Confidence 88888888877533332 2 356667777888888888888888888874 3788888888888888
Q ss_pred HHHHHHHHHHHHC------------------------CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHH
Q 048737 188 EFAIEIWNYILEN------------------------GILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVT 243 (274)
Q Consensus 188 ~~a~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 243 (274)
+.|.+.+++.... ++..+...+..++..|.+.|.+++|+.+++...... .-....
T Consensus 1238 q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A 1238 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence 8888877654321 112244566778888889999999999998776554 334455
Q ss_pred HHHHHHHHHhcC
Q 048737 244 MQKLKKAFYNES 255 (274)
Q Consensus 244 ~~~l~~~~~~~g 255 (274)
|+-+...+++..
T Consensus 1317 ftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1317 FTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHHHHhCC
Confidence 666666666654
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.47 E-value=1.3e-12 Score=100.19 Aligned_cols=229 Identities=10% Similarity=-0.007 Sum_probs=157.6
Q ss_pred hccCcHHHHHHHHHHHhc-------CCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcC-----CccCccHHhHHHH
Q 048737 40 IRGKQVDEALKFLRVMKG-------ENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIG-----FNLMPNLIMYNAV 107 (274)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~l 107 (274)
...|++++|+.++++..+ ...+....++..+...+...|++++|...++++.+.. .+.+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 445666666666665544 2223346678889999999999999999999998651 0013456789999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhc------CC-CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCCC-Ccch
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFH------GA-FPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN------EWQP-TPLN 173 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 173 (274)
..+|...|++++|...|++.... .. +....++..+...|...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11 223678889999999999999999999998764 1122 2457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCcc-HHHHHHHHHHHHhcCCcchHHHHHHHHHh------CCCcc
Q 048737 174 CATAITMLLDADEPEFAIEIWNYILEN-------GILPL-EASANVLLVGLRNLGRLSDVRRFAEEMLN------RRILI 239 (274)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~------~~~~~ 239 (274)
+..+...+...|++++|...+++..+. ...+. ...+..+...+...+....+..+ ..... ...+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcCCCCHH
Confidence 888999999999999999999988763 11222 23344444444444444333332 22211 11233
Q ss_pred CHHHHHHHHHHHHhcChh--HHHHHHHHHHHh
Q 048737 240 YDVTMQKLKKAFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 269 (274)
...++..+...+...|+. |.+.++++++..
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 446788899999999988 999998887653
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=3.1e-11 Score=97.07 Aligned_cols=228 Identities=9% Similarity=-0.024 Sum_probs=171.7
Q ss_pred ccccchHHHHHHHHHHHhcc---CCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCC-CCC-----CHHHHHHHHHH
Q 048737 3 EKEGNVVEANKTFGEMVERF---EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN-CFP-----TLKFFSNALDI 73 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~-----~~~~~~~l~~~ 73 (274)
...|++++|+..|++..... +-.|....++..+...|...|++++|+..+++..+.. -.+ ...+++.+..+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 46799999999999986531 1123346688899999999999999999999887521 111 14577888999
Q ss_pred HHhCCChhhHHHHHHHHHhcCCc---cCccHHhHHHHHHHHHhcCChhhHHHHHHHHHh-----cCCCCChhhHHHHHHH
Q 048737 74 LVKLNDSTHTVQLWDIMVGIGFN---LMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF-----HGAFPDSLTYNMIFEC 145 (274)
Q Consensus 74 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~ 145 (274)
|...|+++.|...|++..+.... ......+++.+..+|...|++++|...|++..+ .. +....++..+...
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~ 270 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWT 270 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHH
Confidence 99999999999999999874200 112345788899999999999999999999876 32 2237788899999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCC-CC---cchHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHH
Q 048737 146 LIKNKKVHEVENFFHEMIKNEWQ-PT---PLNCATAITMLLDADE---PEFAIEIWNYILENGILPL-EASANVLLVGLR 217 (274)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 217 (274)
|.+.|++++|...+++..+.... ++ ...+..+...+...++ +.+|...+++ .+..|+ ...+..+...|.
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHH
Confidence 99999999999999998764211 12 2345556666677788 6666666655 333333 356677889999
Q ss_pred hcCCcchHHHHHHHHHh
Q 048737 218 NLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 218 ~~g~~~~a~~~~~~m~~ 234 (274)
..|++++|...|++..+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999998765
No 81
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.43 E-value=5.9e-12 Score=92.67 Aligned_cols=154 Identities=8% Similarity=0.075 Sum_probs=78.8
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHH----------------HHHHHhccCcHHHHHHHHHHHhcCCCCCCHH
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYET----------------FLITLIRGKQVDEALKFLRVMKGENCFPTLK 65 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 65 (274)
+.+.|++++|+..|++..+. .|+++.+|.. +..++.+.|++++|+..|++..+.. +-+..
T Consensus 14 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 89 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVD 89 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHH
Confidence 34678999999999998776 7877777766 5555555555555555555555432 22344
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCC--hhhHHHHHHHHHhcCCCCChhhHHHHH
Q 048737 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNND--VDNVFRFFDQMVFHGAFPDSLTYNMIF 143 (274)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li 143 (274)
.+..+..++...|++++|...|+++++.. |.+..+|..+..+|...|+ .+.+...++.... ..|....+....
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g 164 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQLE---ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence 55555555555555555555555555543 3344445555544443332 2223333333321 111122222233
Q ss_pred HHHHhcCCHhHHHHHHHHHHh
Q 048737 144 ECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~ 164 (274)
.++...|++++|...|++.++
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 334444555555555555544
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.42 E-value=3e-11 Score=92.06 Aligned_cols=106 Identities=5% Similarity=-0.090 Sum_probs=84.5
Q ss_pred CCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCcc
Q 048737 24 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT---LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPN 100 (274)
Q Consensus 24 ~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 100 (274)
..|.++..+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|+++.|...|+++++...+.+..
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 356677888889999999999999999999998753 223 5778888899999999999999999999864111223
Q ss_pred HHhHHHHHHHHHh--------cCChhhHHHHHHHHHhc
Q 048737 101 LIMYNAVVGLLCN--------NNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 101 ~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~ 130 (274)
...+..+..++.. .|++++|...|+++.+.
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 5667778888888 89999999999998875
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.42 E-value=2.1e-11 Score=94.52 Aligned_cols=201 Identities=10% Similarity=-0.031 Sum_probs=133.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhcC----CCCCC-HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCcc-Cc--cHH
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKGE----NCFPT-LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNL-MP--NLI 102 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~ 102 (274)
.|......|...|++++|++.|.+..+. |-+++ ..+|+.+..+|...|++++|...|++..+..... .+ -..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4666677778888888888888877652 21111 4577888888888888888888888887632000 11 145
Q ss_pred hHHHHHHHHHhc-CChhhHHHHHHHHHhcCCCC-C----hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcc----
Q 048737 103 MYNAVVGLLCNN-NDVDNVFRFFDQMVFHGAFP-D----SLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPL---- 172 (274)
Q Consensus 103 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 172 (274)
+++.+..+|... |++++|+..|++..+..... + ..++..+...+...|++++|+..|++..+........
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 778888888885 88888888888876532110 1 3467788888888888888888888888753222211
Q ss_pred --hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccH------HHHHHHHHHHH--hcCCcchHHHHHHHHH
Q 048737 173 --NCATAITMLLDADEPEFAIEIWNYILENGILPLE------ASANVLLVGLR--NLGRLSDVRRFAEEML 233 (274)
Q Consensus 173 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~m~ 233 (274)
.|..+..++...|+++.|...|++..+.. |+. ..+..++.+|. ..+++++|...|+.+.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 45667778888888888888888876532 221 12344555553 3455666666665544
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.40 E-value=1e-11 Score=86.40 Aligned_cols=142 Identities=11% Similarity=0.031 Sum_probs=101.0
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
+...|++++|++.+...... .|.++..+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++...|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 34567888888888777443 67667777778888888888888888888887753 345777888888888888888
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHH-HHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF-FDQMVFHGAFPDSLTYNMIFECLIKNKK 151 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~ 151 (274)
+|...|++.++.. +.+..+|..+..+|.+.|++++|.+. +++..+.. +-+..+|......+...|+
T Consensus 83 ~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN---PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 8888888888765 44577788888888888887766554 46666642 1245666666666655553
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.39 E-value=3.8e-11 Score=81.19 Aligned_cols=129 Identities=9% Similarity=0.140 Sum_probs=81.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHH
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGL 110 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (274)
+|..+...+...|++++|.++++++.+.+ +.+...+..+...+...|+++.|...++++...+ +.+...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---CCchHHHHHHHHH
Confidence 45566666667777777777777666542 3345566666666666677777777777766654 3445566666666
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 111 LCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666677777777766666542 22455566666666666666666666666654
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.39 E-value=4.9e-12 Score=109.36 Aligned_cols=175 Identities=9% Similarity=-0.084 Sum_probs=140.2
Q ss_pred cccchHHHHHHHHHHHh-----ccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 048737 4 KEGNVVEANKTFGEMVE-----RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 78 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~-----~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (274)
..|++++|++.|++... .....|++...|..+...+.+.|++++|++.|++..+.+ +-+...+..+..++...|
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcC
Confidence 56889999999999871 002368788899999999999999999999999998753 446788888999999999
Q ss_pred ChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 048737 79 DSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENF 158 (274)
Q Consensus 79 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 158 (274)
++++|...|+++.+.. +.+...|..+..++.+.|++++ .+.|++..+... .+...|..+..++.+.|++++|...
T Consensus 482 ~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTF---PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp CHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999875 5567888999999999999999 999999887632 3577889999999999999999999
Q ss_pred HHHHHhCCCCCC-cchHHHHHHHHHhcCC
Q 048737 159 FHEMIKNEWQPT-PLNCATAITMLLDADE 186 (274)
Q Consensus 159 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 186 (274)
|++..+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9988764 354 4566667777655444
No 87
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.38 E-value=1.3e-11 Score=106.65 Aligned_cols=188 Identities=10% Similarity=-0.035 Sum_probs=151.0
Q ss_pred CCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHh--------cCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcC
Q 048737 23 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK--------GENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIG 94 (274)
Q Consensus 23 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 94 (274)
...|.++..+.... ...|++++|++.+++.. +. .+.+...+..+..++...|++++|...|+++.+..
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 463 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV 463 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Confidence 44565555444322 78899999999999998 32 24467788899999999999999999999999875
Q ss_pred CccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchH
Q 048737 95 FNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNC 174 (274)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 174 (274)
+.+...|..+..++...|++++|.+.|++..+... -+...|..+..+|.+.|++++ +..|++..+.. +.+...|
T Consensus 464 ---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~ 537 (681)
T 2pzi_A 464 ---GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAA 537 (681)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHH
T ss_pred ---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHH
Confidence 56788999999999999999999999999988632 257889999999999999999 99999998754 3356788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 048737 175 ATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGR 221 (274)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 221 (274)
..+..++.+.|++++|...|++..+.+. -+...+..+..++...++
T Consensus 538 ~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 538 FGLARARSAEGDRVGAVRTLDEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCTTST-THHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 9999999999999999999998877542 345677777777766554
No 88
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.38 E-value=8.9e-12 Score=89.16 Aligned_cols=163 Identities=9% Similarity=-0.010 Sum_probs=92.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHH
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGL 110 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (274)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++.... |+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~----p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY----QDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc----CChHHHHHHHHH
Confidence 44555666666677777777776665432 3345566666666666777777777766665543 233322222211
Q ss_pred -HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhcCChH
Q 048737 111 -LCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQP-TPLNCATAITMLLDADEPE 188 (274)
Q Consensus 111 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 188 (274)
+.+.++...|...+++..+..+ -+...+..+...+...|++++|...|+++.+..-.+ +...+..+...+...|+.+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 1122233345666666665421 245666666667777777777777777666543111 2345666667777777777
Q ss_pred HHHHHHHHHHH
Q 048737 189 FAIEIWNYILE 199 (274)
Q Consensus 189 ~a~~~~~~~~~ 199 (274)
+|...|++...
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 77766665543
No 89
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.38 E-value=3e-10 Score=101.98 Aligned_cols=189 Identities=14% Similarity=0.120 Sum_probs=151.0
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
+...|.+++|..+|++... ...+.+.++. ..+++++|.++.++. -++.+|..+..++.+.|+++
T Consensus 1059 ai~lglyEEAf~IYkKa~~-------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHH
Confidence 3467899999999988631 2333444433 678899999998865 24788999999999999999
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHE 161 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (274)
+|...|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|.+.+++++...+.
T Consensus 1123 EAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 999999553 366788889999999999999999999887753 44444556899999999988655443
Q ss_pred HHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 048737 162 MIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEM 232 (274)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 232 (274)
+ .++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 2 356667778999999999999999999884 48999999999999999999998876
No 90
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.37 E-value=3.2e-11 Score=102.24 Aligned_cols=154 Identities=3% Similarity=-0.086 Sum_probs=121.5
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHH
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTV 84 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (274)
.|++++|++.|++..+. .|.+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 58899999999998665 88889999999999999999999999999999863 456888999999999999999999
Q ss_pred HHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---CCHhHHHHHHHH
Q 048737 85 QLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN---KKVHEVENFFHE 161 (274)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~ 161 (274)
+.+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+... .+...+..+...+... |++++|...+++
T Consensus 78 ~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 78 VLLQQASDAA---PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 9999999975 56788999999999999999999999999988632 3578889999999999 999999999999
Q ss_pred HHhCC
Q 048737 162 MIKNE 166 (274)
Q Consensus 162 ~~~~~ 166 (274)
..+.+
T Consensus 154 al~~~ 158 (568)
T 2vsy_A 154 AVAQG 158 (568)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 98754
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.36 E-value=7.9e-11 Score=79.60 Aligned_cols=127 Identities=9% Similarity=0.125 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048737 67 FSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 146 (274)
Q Consensus 67 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 146 (274)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..+...+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC---CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 3344444455555555555555554433 2334444444555555555555555555544432 12334444444444
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048737 147 IKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYIL 198 (274)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (274)
...|++++|...++++.+.. +.+...+..+...+...|++++|...+.++.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44555555555554444322 1123334444444444444444444444443
No 92
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=5.4e-10 Score=89.50 Aligned_cols=239 Identities=11% Similarity=-0.054 Sum_probs=169.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHhCCChhhHHHHHHHHHhcCCcc-Cc--cHHh
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK----FFSNALDILVKLNDSTHTVQLWDIMVGIGFNL-MP--NLIM 103 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~ 103 (274)
.+......+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+++........ .+ ...+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34455667778999999999999988753222222 45667778889999999999999987642000 11 1234
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhc----CCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC--C--Ccc
Q 048737 104 YNAVVGLLCNNNDVDNVFRFFDQMVFH----GAF--P-DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQ--P--TPL 172 (274)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~ 172 (274)
+..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 677888899999999999999987653 211 2 2456677888899999999999999998764211 1 124
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccH-HHHH-----HHHHHHHhcCCcchHHHHHHHHHhCCCcc---CHHH
Q 048737 173 NCATAITMLLDADEPEFAIEIWNYILENGILPLE-ASAN-----VLLVGLRNLGRLSDVRRFAEEMLNRRILI---YDVT 243 (274)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~ 243 (274)
.+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5777888899999999999999988753211111 1121 23344779999999999999987643221 2335
Q ss_pred HHHHHHHHHhcChh--HHHHHHHHHHHh
Q 048737 244 MQKLKKAFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 244 ~~~l~~~~~~~g~~--a~~~~~~~~~~~ 269 (274)
+..+...+...|+. |.+.++.+.+..
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~ 283 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENA 283 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 66778888888987 888888776654
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.36 E-value=1.2e-10 Score=85.62 Aligned_cols=130 Identities=7% Similarity=0.013 Sum_probs=70.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 048737 107 VVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADE 186 (274)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (274)
+..+|.+.|++++|...|++..+..+ -+...+..+...+...|++++|...|++.++.. +.+...+..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 66666666666666666666665421 245666666666666667777776666666532 2234455555555544432
Q ss_pred --hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHH
Q 048737 187 --PEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDV 242 (274)
Q Consensus 187 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 242 (274)
...+...+.... ...|....+.....++...|++++|...|++..+. .|+..
T Consensus 138 ~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 138 QEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred HHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 233334443332 12232223333444455566777777777776654 45543
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.36 E-value=2.5e-10 Score=86.92 Aligned_cols=169 Identities=9% Similarity=0.005 Sum_probs=136.7
Q ss_pred CCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCcc---HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCC-h
Q 048737 62 PTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPN---LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGA-FPD-S 136 (274)
Q Consensus 62 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~ 136 (274)
.+...+..+...+.+.|++++|...|+++++.. +.+ ...+..+..+|.+.|++++|...|++..+..+ .|. .
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG---RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 456777888889999999999999999999875 333 67888999999999999999999999988632 112 4
Q ss_pred hhHHHHHHHHHh--------cCCHhHHHHHHHHHHhCCCCCCc-chH-----------------HHHHHHHHhcCChHHH
Q 048737 137 LTYNMIFECLIK--------NKKVHEVENFFHEMIKNEWQPTP-LNC-----------------ATAITMLLDADEPEFA 190 (274)
Q Consensus 137 ~~~~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~-----------------~~l~~~~~~~~~~~~a 190 (274)
..+..+..++.. .|++++|...|++.++.. |+. ... ..+...|.+.|++++|
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 567778888888 999999999999998753 443 333 4567889999999999
Q ss_pred HHHHHHHHHCCCCc--cHHHHHHHHHHHHhc----------CCcchHHHHHHHHHhC
Q 048737 191 IEIWNYILENGILP--LEASANVLLVGLRNL----------GRLSDVRRFAEEMLNR 235 (274)
Q Consensus 191 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~ 235 (274)
...|+++.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 99999998854321 345777788888766 8899999999999876
No 95
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.35 E-value=3.4e-10 Score=83.47 Aligned_cols=178 Identities=12% Similarity=0.053 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC----ChhhHH
Q 048737 9 VEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN----DSTHTV 84 (274)
Q Consensus 9 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~ 84 (274)
.+|++.|++..+. | ++.++..|...|...+++++|+++|++..+.| ++..+..|...|.. + ++++|.
T Consensus 3 ~eA~~~~~~aa~~-g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 3 TEPGSQYQQQAEA-G----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp -CTTHHHHHHHHT-T----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred chHHHHHHHHHHC-C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 3566777777664 2 66778888888888888888988888888765 56677777777776 6 788888
Q ss_pred HHHHHHHhcCCccCccHHhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCC-CChhhHHHHHHHHHh----cCCHhHH
Q 048737 85 QLWDIMVGIGFNLMPNLIMYNAVVGLLCN----NNDVDNVFRFFDQMVFHGAF-PDSLTYNMIFECLIK----NKKVHEV 155 (274)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a 155 (274)
..|++..+.| +...+..|...|.. .+++++|+..|++..+.|.. .+...+..|...|.. .+++++|
T Consensus 74 ~~~~~A~~~g-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 74 QLAEKAVEAG-----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHHHHTT-----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHHHHCC-----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 8888887766 55677777777776 77888888888888776421 126677777777777 7788888
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhc-C-----ChHHHHHHHHHHHHCCC
Q 048737 156 ENFFHEMIKNEWQPTPLNCATAITMLLDA-D-----EPEFAIEIWNYILENGI 202 (274)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 202 (274)
...|++..+. ..+...+..|...|... | ++++|...|++..+.|.
T Consensus 149 ~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8888888775 23445666676666543 2 78888888888777764
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.35 E-value=4.2e-11 Score=92.88 Aligned_cols=196 Identities=9% Similarity=-0.009 Sum_probs=141.2
Q ss_pred cccccchHHHHHHHHHHHhc---cCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCC-CCC----HHHHHHHHHH
Q 048737 2 WEKEGNVVEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC-FPT----LKFFSNALDI 73 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~ 73 (274)
|...|++++|.+.|++.... .|-.+....+|+.+..+|.+.|++++|+..|++..+... ..+ ..++..+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44578899999998876542 122222367899999999999999999999998875311 012 3578888999
Q ss_pred HHhC-CChhhHHHHHHHHHhcCCcc-Cc--cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh------hhHHHHH
Q 048737 74 LVKL-NDSTHTVQLWDIMVGIGFNL-MP--NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS------LTYNMIF 143 (274)
Q Consensus 74 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li 143 (274)
|... |++++|...|++..+..... .+ ...+++.+...+.+.|++++|+..|++..+....... ..|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 9996 99999999999998743000 01 1457889999999999999999999999886433222 1567788
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCcc------hHHHHHHHHH--hcCChHHHHHHHHHHHH
Q 048737 144 ECLIKNKKVHEVENFFHEMIKNEWQPTPL------NCATAITMLL--DADEPEFAIEIWNYILE 199 (274)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 199 (274)
.++...|++++|...|++..+. .|+.. .+..++.++. ..+++++|...|+.+..
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 8899999999999999998763 34321 2444556664 34667888887766544
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.34 E-value=8.3e-10 Score=84.89 Aligned_cols=180 Identities=11% Similarity=0.022 Sum_probs=84.8
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 048737 48 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQM 127 (274)
Q Consensus 48 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (274)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. ..-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-AEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444444332 33444444555555555666666666655554430 0124455555555666666666666666665
Q ss_pred HhcCCCC-----ChhhHHHHHHH--HHhcC--CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048737 128 VFHGAFP-----DSLTYNMIFEC--LIKNK--KVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYIL 198 (274)
Q Consensus 128 ~~~~~~~-----~~~~~~~li~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (274)
.+. .| +..+...+..+ ....| ++.+|..+|+++.+. .|+..+-..++.++...|++++|...++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 542 33 23344444433 22223 555666666665442 2332222333335555566666666655443
Q ss_pred HCC---------CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 199 ENG---------ILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 199 ~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
+.. -+-++.+...++......|+ +|.+++.++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 320 02234444333333333444 555555555554
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=2.7e-10 Score=87.61 Aligned_cols=239 Identities=9% Similarity=0.008 Sum_probs=159.5
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHH
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTV 84 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (274)
.|.+..++.-...+. ...+ +. .-.-+.+++...|++... ..-.|....+..+...+ ..+ +.
T Consensus 26 ~G~yq~~i~e~~~~~---~~~~-~~-~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 26 TGNFVQCLQEIEKFS---KVTD-NT-LLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp TTCHHHHTHHHHTSS---CCCC-HH-HHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CC
T ss_pred hhHHHHHHHHHHhcC---ccch-HH-HHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HH
Confidence 466666665332221 1122 22 222345667766766531 11234433444333333 322 67
Q ss_pred HHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 85 QLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGA-FPDSLTYNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
..+++....+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+++.|.+.+++|.
T Consensus 87 ~~l~~l~~~~---~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 87 EELENLLKDK---QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp HHHHHTTTTS---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888887765 45566667888999999999999999999877653 2357888899999999999999999999998
Q ss_pred hCCCCC-----CcchHHHHHHHH--HhcC--ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 164 KNEWQP-----TPLNCATAITML--LDAD--EPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 164 ~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
+. .| +..+...|..++ ...| ++..|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 74 56 356666676663 3334 8999999999987653 5433334444589999999999999997765
Q ss_pred C-----C----CccCHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q 048737 235 R-----R----ILIYDVTMQKLKKAFYNESRSMRDRFDSLERRW 269 (274)
Q Consensus 235 ~-----~----~~~~~~~~~~l~~~~~~~g~~a~~~~~~~~~~~ 269 (274)
. + -+-|+.++..+|......|+.|.++++++.+.-
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHHhC
Confidence 3 1 133556665666666667777777777776543
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.33 E-value=3.9e-10 Score=83.11 Aligned_cols=179 Identities=8% Similarity=-0.065 Sum_probs=145.2
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcC----ChhhHH
Q 048737 46 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNN----DVDNVF 121 (274)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~ 121 (274)
.+|++.|++..+.| ++..+..|...+...+++++|...|++..+.| +...+..|...|.. + ++++|.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----DGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 35778888888764 78888889999999999999999999999877 56778888888888 6 899999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCC-CCcchHHHHHHHHHh----cCChHHHHH
Q 048737 122 RFFDQMVFHGAFPDSLTYNMIFECLIK----NKKVHEVENFFHEMIKNEWQ-PTPLNCATAITMLLD----ADEPEFAIE 192 (274)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~ 192 (274)
..|++..+.| +...+..+...|.. .+++++|...|++..+.|.. .++..+..|...|.. .+++++|..
T Consensus 74 ~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 74 QLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999998754 67788888888877 88999999999999886521 026788888888888 789999999
Q ss_pred HHHHHHHCCCCccHHHHHHHHHHHHhc-C-----CcchHHHHHHHHHhCCCc
Q 048737 193 IWNYILENGILPLEASANVLLVGLRNL-G-----RLSDVRRFAEEMLNRRIL 238 (274)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~~ 238 (274)
.|++..+.+ .+...+..|...|... | ++++|..+|+...+.|..
T Consensus 151 ~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 151 YFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 999998862 3344667777777653 3 899999999999888754
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.31 E-value=2.8e-09 Score=82.52 Aligned_cols=220 Identities=10% Similarity=0.041 Sum_probs=170.5
Q ss_pred chHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccC--cHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH----HhC---
Q 048737 7 NVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK--QVDEALKFLRVMKGENCFPTLKFFSNALDIL----VKL--- 77 (274)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 77 (274)
..++|+++++.+... .|.+..+|+.--..+...+ ++++++++++.+.... +-+..+|+.--..+ ...
T Consensus 48 ~s~~aL~~t~~~L~~---nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 48 YSERALHITELGINE---LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 346899999988665 8888889999888888888 9999999999998753 33455565544444 444
Q ss_pred CChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChh--hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC----
Q 048737 78 NDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVD--NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKK---- 151 (274)
Q Consensus 78 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---- 151 (274)
++++++..+++.+.+.. +.+..+|+.-..+..+.++++ ++++.++++.+..+. |-..|+.-...+...++
T Consensus 124 ~~~~~EL~~~~~~l~~~---pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD---PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCTHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred CCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 78899999999999876 678888988888888888888 999999999887543 77888877777777666
Q ss_pred --HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCccHHHHHHHHHHHHhcCCcchHH
Q 048737 152 --VHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEF-AIEIWNYILENG--ILPLEASANVLLVGLRNLGRLSDVR 226 (274)
Q Consensus 152 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 226 (274)
++++++.+++++... +-|...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 888999998888754 4466788888888888877444 555666655433 1246678888889999999999999
Q ss_pred HHHHHHHhC
Q 048737 227 RFAEEMLNR 235 (274)
Q Consensus 227 ~~~~~m~~~ 235 (274)
++++.+.+.
T Consensus 279 ~~~~~l~~~ 287 (306)
T 3dra_A 279 TVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999998764
No 101
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.31 E-value=3e-11 Score=99.50 Aligned_cols=241 Identities=14% Similarity=0.111 Sum_probs=130.2
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcH---HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV---DEALKFLRVMKGENCFPTLKFFSNALDILVKLN- 78 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 78 (274)
.+.|++++|+++|++..+. | ++.++..|...|...|++ ++|+.+|++..+. ++..+..|...+...+
T Consensus 14 ~~~g~~~~A~~~~~~aa~~-g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAEL-G----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHH-T----CCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HhCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 4568889999999888764 3 344566677777777777 8888888887753 4455566666454444
Q ss_pred ----ChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCC-----------------------------------hhh
Q 048737 79 ----DSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNND-----------------------------------VDN 119 (274)
Q Consensus 79 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------------------------~~~ 119 (274)
++++|...|++..+.| .++ .+..|...|...+. +++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g---~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANG---EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTT---CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred CCCcCHHHHHHHHHHHHHCC---CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 6778888888888776 222 44444444444333 222
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc----CChHHHHH
Q 048737 120 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNK---KVHEVENFFHEMIKNEWQPTPLNCATAITMLLDA----DEPEFAIE 192 (274)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~ 192 (274)
+......+.+.-...+...+..+...|...| +.++|+..|++..+.| .++...+..+...|... +++++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 2222111111111233446777777777777 7778888888877766 34444445666666544 57788888
Q ss_pred HHHHHHHCCCCccHHHHHHHHHH-H--HhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC-----hh--HHHHH
Q 048737 193 IWNYILENGILPLEASANVLLVG-L--RNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNES-----RS--MRDRF 262 (274)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-----~~--a~~~~ 262 (274)
.|++.. .| +...+..+... | ...+++++|...|++..+.| +...+..|-..|. .| +. |.+.+
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 887776 33 33455555555 3 45678888888888887776 4555666666665 33 33 66665
Q ss_pred HHHH
Q 048737 263 DSLE 266 (274)
Q Consensus 263 ~~~~ 266 (274)
.+..
T Consensus 311 ~~Aa 314 (452)
T 3e4b_A 311 EKAV 314 (452)
T ss_dssp HTTT
T ss_pred HHHh
Confidence 5443
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.29 E-value=8.3e-11 Score=84.05 Aligned_cols=160 Identities=9% Similarity=0.013 Sum_probs=79.9
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH-H
Q 048737 68 SNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC-L 146 (274)
Q Consensus 68 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~ 146 (274)
..+...+...|++++|...|+++.+.. |.+...+..+..++.+.|++++|...|++..... |+...+..+... +
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 334445555666666666666555543 3345555556666666666666666666554432 232222221111 1
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCcchH
Q 048737 147 IKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILP-LEASANVLLVGLRNLGRLSDV 225 (274)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a 225 (274)
...++..++...+++..+.. +-+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 11122223455555555432 1234455555566666666666666666655543221 234555555566666666666
Q ss_pred HHHHHHHH
Q 048737 226 RRFAEEML 233 (274)
Q Consensus 226 ~~~~~~m~ 233 (274)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555543
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.29 E-value=4.1e-10 Score=87.02 Aligned_cols=166 Identities=10% Similarity=0.003 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHH
Q 048737 62 PTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNM 141 (274)
Q Consensus 62 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (274)
.+...+..+...+...|++++|...|+++.+.. +.+...+..+..++.+.|++++|...+++.... .|+......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS---NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 344556666667777777777777777777754 445666777777777777777777777776654 344332222
Q ss_pred -HHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHhc
Q 048737 142 -IFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGIL-PLEASANVLLVGLRNL 219 (274)
Q Consensus 142 -li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 219 (274)
....+...++.++|...+++..... +.+...+..+...+...|++++|...+.++.+.... .+...+..+...|...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 2223555666666777777766643 334566677777777777777777777777765432 1245677777777777
Q ss_pred CCcchHHHHHHHHH
Q 048737 220 GRLSDVRRFAEEML 233 (274)
Q Consensus 220 g~~~~a~~~~~~m~ 233 (274)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 77777777776644
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.29 E-value=4.2e-10 Score=87.87 Aligned_cols=221 Identities=14% Similarity=0.107 Sum_probs=143.9
Q ss_pred cccchHHHHHHHHHHHhc-----cCCCCc---hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCC-CC----HHHHHHH
Q 048737 4 KEGNVVEANKTFGEMVER-----FEWNPE---HVLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PT----LKFFSNA 70 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~-----~~~~p~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 70 (274)
..|++++|.+++++..+. +++.|+ -...|......|...|++++|...|.+..+.... .+ ..+|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 468999999999877653 111231 1235777777888888999888888877652100 11 3467778
Q ss_pred HHHHHhCCChhhHHHHHHHHHhcCCcc-Cc--cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-----ChhhHHHH
Q 048737 71 LDILVKLNDSTHTVQLWDIMVGIGFNL-MP--NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP-----DSLTYNMI 142 (274)
Q Consensus 71 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l 142 (274)
...|...|++++|...|++..+..... .+ ...+++.+..+|.. |++++|+..|++..+..... ...++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 888888889999988888876531000 12 24567788888888 88999988888876531110 14567788
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhC----CCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-cc---HHHHHHHH
Q 048737 143 FECLIKNKKVHEVENFFHEMIKN----EWQPT-PLNCATAITMLLDADEPEFAIEIWNYILENGIL-PL---EASANVLL 213 (274)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~ 213 (274)
...|...|++++|+..|++..+. +..++ ...+..+..++...|++++|...|++.. .... ++ ......++
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~ 240 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLL 240 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHH
Confidence 88888889999998888887653 11111 1255566677777788999988888877 4211 01 12334445
Q ss_pred HHHHhcCCcchHHH
Q 048737 214 VGLRNLGRLSDVRR 227 (274)
Q Consensus 214 ~~~~~~g~~~~a~~ 227 (274)
.++ ..|+.+.+..
T Consensus 241 ~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 241 QAY-DEQDEEQLLR 253 (307)
T ss_dssp HHH-HTTCHHHHHH
T ss_pred HHH-HhcCHHHHHH
Confidence 544 4566655555
No 105
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.27 E-value=4.6e-09 Score=86.44 Aligned_cols=193 Identities=11% Similarity=0.058 Sum_probs=136.9
Q ss_pred hHhHHHHHHHHHhccC---cHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC----CChhhHHHHHHHHHhcCCccCcc
Q 048737 28 HVLAYETFLITLIRGK---QVDEALKFLRVMKGENCFPTLKFFSNALDILVKL----NDSTHTVQLWDIMVGIGFNLMPN 100 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~ 100 (274)
++.++..|...|...| +.++|++.|++..+.| .++...+..|...|... +++++|...|++.. .| +
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g-----~ 247 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG-----Y 247 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG-----S
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC-----C
Confidence 3347777888888888 8888888888888776 45555556666666544 68888888888887 54 3
Q ss_pred HHhHHHHHHH-H--HhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-----CHhHHHHHHHHHHhCCCCCCcc
Q 048737 101 LIMYNAVVGL-L--CNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK-----KVHEVENFFHEMIKNEWQPTPL 172 (274)
Q Consensus 101 ~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~ 172 (274)
...+..|... + ...+++++|...|++..+.| +...+..+...|. .| ++++|...|++.. . -+..
T Consensus 248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~ 319 (452)
T 3e4b_A 248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVA 319 (452)
T ss_dssp THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHH
Confidence 4455666665 3 45788888888888888765 5667777777776 45 8888888888776 3 3555
Q ss_pred hHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCcchHHHHHHHHHhCCCc
Q 048737 173 NCATAITMLLD----ADEPEFAIEIWNYILENGILPLEASANVLLVGLRN----LGRLSDVRRFAEEMLNRRIL 238 (274)
Q Consensus 173 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 238 (274)
.+..|...|.. ..++++|...|++..+.|. | .....|...|.. ..+.++|..+|+...+.|..
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-N--SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-T--THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 66667766665 3488888888888877664 2 345555555553 35788888888888887743
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.26 E-value=3.5e-10 Score=87.46 Aligned_cols=167 Identities=10% Similarity=0.041 Sum_probs=117.3
Q ss_pred CccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHH-H
Q 048737 98 MPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCA-T 176 (274)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 176 (274)
+.+...+..+...+.+.|++++|...|++..+... -+...+..+...+...|++++|...+++.... .|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 45566677777888888888888888888877532 25677788888888888888888888877653 35433222 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCc-cCHHHHHHHHHHHHhcC
Q 048737 177 AITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRIL-IYDVTMQKLKKAFYNES 255 (274)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g 255 (274)
....+...++.+.|...+++..+... .+...+..+...+...|++++|...|.++.+.... .+...+..+...+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 22335566777778888888777653 55677788888888888888888888888776422 12566777888888877
Q ss_pred hh--HHHHHHHHHHH
Q 048737 256 RS--MRDRFDSLERR 268 (274)
Q Consensus 256 ~~--a~~~~~~~~~~ 268 (274)
+. |...+++.+..
T Consensus 270 ~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 270 TGDALASXYRRQLYA 284 (287)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 65 66666665543
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.26 E-value=6.3e-11 Score=82.39 Aligned_cols=144 Identities=9% Similarity=-0.063 Sum_probs=83.4
Q ss_pred HHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhc
Q 048737 35 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNN 114 (274)
Q Consensus 35 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (274)
|...+...|++++|++.+....... +-++..+..+...|.+.|++++|.+.|++.++.. +.+..+|..+..+|.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---ERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHc
Confidence 3445556667777777776665431 1123344556666777777777777777777654 44566677777777777
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHH-HHHHHhCCCCCC-cchHHHHHHHHHhcC
Q 048737 115 NDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENF-FHEMIKNEWQPT-PLNCATAITMLLDAD 185 (274)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 185 (274)
|++++|...|++..+..+ -+..+|..+...|.+.|+++++... +++..+. .|+ +..|......+...|
T Consensus 79 ~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred CchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 777777777777666421 1456666666677777766654443 4555553 233 344444444444444
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.26 E-value=2.7e-09 Score=79.30 Aligned_cols=186 Identities=8% Similarity=-0.014 Sum_probs=116.2
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCC-CC-CHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccH---H
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENC-FP-TLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNL---I 102 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~ 102 (274)
++..+..+...+.+.|++++|+..|+++.+..- .| ....+..+..++.+.|++++|...|+++.+.. |.+. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---P~~~~~~~ 79 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN---PTHPNIDY 79 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTTHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCCcHHH
Confidence 345667788888999999999999999887421 12 13567778889999999999999999998865 2222 2
Q ss_pred hHHHHHHHHHh------------------cCChhhHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 103 MYNAVVGLLCN------------------NNDVDNVFRFFDQMVFHGAFPDS-LTYNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 103 ~~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
.+..+..++.. .|++++|...|+++.+. .|+. ..+......- .+...+.
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~~ 147 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRLA 147 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHHH
Confidence 45555555554 34566666666666553 2322 1111110000 0000000
Q ss_pred hCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc--cHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 048737 164 KNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILP--LEASANVLLVGLRNLGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 236 (274)
.....+...|.+.|+++.|...|+++.+..... ....+..+..+|.+.|++++|.+.++.+...+
T Consensus 148 --------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 --------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011245566777888888888888887753221 12467777888888888888888888777653
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.25 E-value=2.2e-09 Score=79.77 Aligned_cols=175 Identities=12% Similarity=0.030 Sum_probs=115.6
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHh-
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL----KFFSNALDILVK- 76 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~- 76 (274)
+.+.|++++|+..|+++.....-.|....++..+..++.+.|++++|+..|++..+.. |+. ..+..+..++..
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~g~~~~~~ 91 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMRGLTNMAL 91 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHHHHHHHhh
Confidence 4568999999999999988622222224678889999999999999999999998743 332 245555555554
Q ss_pred -----------------CCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH
Q 048737 77 -----------------LNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTY 139 (274)
Q Consensus 77 -----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (274)
.|++++|...|+++++.. |-+...+....... .+...+ ....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~----------~~~~~~--------~~~~ 150 (225)
T 2yhc_A 92 DDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRLV----------FLKDRL--------AKYE 150 (225)
T ss_dssp HC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHH----------HHHHHH--------HHHH
T ss_pred hhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHH----------HHHHHH--------HHHH
Confidence 578999999999999875 33333333221110 000111 0112
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048737 140 NMIFECLIKNKKVHEVENFFHEMIKNEWQPTP----LNCATAITMLLDADEPEFAIEIWNYILENG 201 (274)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (274)
..+...|.+.|++++|...|+++++. .|+. ..+..+..++.+.|++++|.+.++.+...+
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 23456677777777887777777764 2432 356667777777788888877777776654
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.23 E-value=4.5e-10 Score=95.21 Aligned_cols=155 Identities=7% Similarity=-0.075 Sum_probs=119.6
Q ss_pred cCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHH
Q 048737 42 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVF 121 (274)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 121 (274)
.|++++|++.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH---PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS---TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999988753 4457889999999999999999999999999975 567889999999999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc---CChHHHHHHHHHHH
Q 048737 122 RFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDA---DEPEFAIEIWNYIL 198 (274)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~ 198 (274)
+.|++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999998863 2357889999999999999999999999998753 33467888899999999 99999999999998
Q ss_pred HCCC
Q 048737 199 ENGI 202 (274)
Q Consensus 199 ~~~~ 202 (274)
+.+.
T Consensus 156 ~~~p 159 (568)
T 2vsy_A 156 AQGV 159 (568)
T ss_dssp HHTC
T ss_pred hcCC
Confidence 8653
No 111
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.23 E-value=2e-09 Score=92.28 Aligned_cols=237 Identities=6% Similarity=-0.031 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHH-HHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHH
Q 048737 9 VEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL-KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLW 87 (274)
Q Consensus 9 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 87 (274)
+.+..+|++.... .|.+...|...+..+...|+.++|. ++|++.... ++.+...+...+...-+.|+++.|..+|
T Consensus 326 ~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iy 401 (679)
T 4e6h_A 326 ARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTI 401 (679)
T ss_dssp HHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4556788888776 6667889999999999999999997 999999864 4556667778888888999999999999
Q ss_pred HHHHhcCC-------ccCc------------cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 048737 88 DIMVGIGF-------NLMP------------NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148 (274)
Q Consensus 88 ~~~~~~~~-------~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 148 (274)
+.++.... +..| ...+|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+
T Consensus 402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99986410 0013 2346888888888899999999999999875111223344333332233
Q ss_pred c-CCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--ccHHHHHHHHHHHHhcCCcchH
Q 048737 149 N-KKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGIL--PLEASANVLLVGLRNLGRLSDV 225 (274)
Q Consensus 149 ~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a 225 (274)
. ++++.|.++|+..++. .+-+...+...++.....|+.+.|..+|++....... -....|...+..-.+.|+.+.+
T Consensus 482 ~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3 4589999999999875 2334556678888888899999999999998876532 2457888888888999999999
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHH
Q 048737 226 RRFAEEMLNRRILIYDVTMQKLKKAFY 252 (274)
Q Consensus 226 ~~~~~~m~~~~~~~~~~~~~~l~~~~~ 252 (274)
.++.+++.+. .|+......+++-|.
T Consensus 561 ~~v~~R~~~~--~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 561 RTLEKRFFEK--FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHHHH--STTCCHHHHHHHHTC
T ss_pred HHHHHHHHHh--CCCCcHHHHHHHHhc
Confidence 9999999887 344444444544443
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.20 E-value=6.4e-10 Score=74.77 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=83.5
Q ss_pred CCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHH
Q 048737 23 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLI 102 (274)
Q Consensus 23 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 102 (274)
-+.|.....|......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|...|++.++.. +.+..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~ 82 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD---SKFIK 82 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh---hhhhH
Confidence 3577777788888888888888888888888887753 4567788888888888888888888888888865 55677
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
.|..+..+|...|++++|.+.|++..+.
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8888888888888888888888888774
No 113
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.19 E-value=3.5e-10 Score=80.72 Aligned_cols=122 Identities=6% Similarity=0.079 Sum_probs=89.2
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhCCCh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI-LVKLNDS 80 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 80 (274)
+...|++++|+..|++.... .|.+..+|..+...+...|++++|+..|++..+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCc
Confidence 45667888888888887665 67677788888888888888888888888877643 3356667777777 6677887
Q ss_pred --hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 81 --THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 81 --~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
+.|...++++.+.. +.+...+..+..+|...|++++|...|++..+.
T Consensus 96 ~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 96 MTAQTRAMIDKALALD---SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888888765 445677777888888888888888888887765
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.19 E-value=5.1e-09 Score=76.87 Aligned_cols=132 Identities=10% Similarity=-0.017 Sum_probs=110.6
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
+...+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...|++..+.. +.+...+..+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~l 77 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQR 77 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHH
Confidence 34456678888899999999999998774 5688899999999999999999999999999875 5678889999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCC--------------C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAF--------------P-DSLTYNMIFECLIKNKKVHEVENFFHEMIKNE 166 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (274)
..+|...|++++|...|++..+.... | ....+..+..+|...|++++|...|++..+..
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999999998875321 1 12678888888999999999999999988753
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.18 E-value=4.8e-09 Score=81.82 Aligned_cols=213 Identities=7% Similarity=0.004 Sum_probs=147.8
Q ss_pred cCcHHHHHHHHHHHhcC------CCCCCH----HHHHHHHHHHHhCCChhhHHHHHHHHHhcCCcc-C--ccHHhHHHHH
Q 048737 42 GKQVDEALKFLRVMKGE------NCFPTL----KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNL-M--PNLIMYNAVV 108 (274)
Q Consensus 42 ~~~~~~a~~~~~~~~~~------~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~~~l~ 108 (274)
.|++++|.+++++..+. +..++. ..|......|...|++++|...|.+..+..... . .-..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777777655431 112342 256666788889999999999999887642000 1 1245788999
Q ss_pred HHHHhcCChhhHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC---C--CcchHHHHH
Q 048737 109 GLLCNNNDVDNVFRFFDQMVFH----GAFP-DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQ---P--TPLNCATAI 178 (274)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~ 178 (274)
.+|.+.|++++|+..|++..+. |-.. -..++..+...|.. |++++|+..|++..+.... + ...++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 9999999999999999987653 1111 14678888888988 9999999999988753111 1 135678889
Q ss_pred HHHHhcCChHHHHHHHHHHHHC----CCCcc-HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCc-cC---HHHHHHHHH
Q 048737 179 TMLLDADEPEFAIEIWNYILEN----GILPL-EASANVLLVGLRNLGRLSDVRRFAEEMLNRRIL-IY---DVTMQKLKK 249 (274)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~---~~~~~~l~~ 249 (274)
..|...|++++|...|++..+. +..+. ...+..+...+...|++++|...|++.. .... ++ ......++.
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~ 241 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQ 241 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999998763 22222 2356667778888899999999999988 4211 11 123445555
Q ss_pred HHHhcChh
Q 048737 250 AFYNESRS 257 (274)
Q Consensus 250 ~~~~~g~~ 257 (274)
++ ..|+.
T Consensus 242 ~~-~~~d~ 248 (307)
T 2ifu_A 242 AY-DEQDE 248 (307)
T ss_dssp HH-HTTCH
T ss_pred HH-HhcCH
Confidence 55 44554
No 116
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.16 E-value=1.1e-09 Score=83.24 Aligned_cols=188 Identities=7% Similarity=-0.101 Sum_probs=133.8
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHH-------HHHHhccCcHHHHHHHHHHHhcCCCCCC-------------
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETF-------LITLIRGKQVDEALKFLRVMKGENCFPT------------- 63 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~~------------- 63 (274)
+.++...|.+.|.++... .|.....|..+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~---dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY---DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHh---ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccc
Confidence 467889999999999776 88888889888 5666666666666666655544 2221
Q ss_pred ---------HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 048737 64 ---------LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP 134 (274)
Q Consensus 64 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 134 (274)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~----p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~ 167 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG----SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DK 167 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT----CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cc
Confidence 2233455677778889999999988887754 443366666778888899999999888654421 11
Q ss_pred C--hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048737 135 D--SLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT--PLNCATAITMLLDADEPEFAIEIWNYILENG 201 (274)
Q Consensus 135 ~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (274)
. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1 23677778888888999999999888875433243 2355666777788888899999888888865
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.16 E-value=6.1e-10 Score=77.27 Aligned_cols=105 Identities=10% Similarity=0.092 Sum_probs=75.2
Q ss_pred cCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccH
Q 048737 22 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNL 101 (274)
Q Consensus 22 ~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 101 (274)
..+.|++...+..+...+.+.|++++|+..|++..... +-+...|..+..++...|++++|...|+++.+.. |.+.
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~ 104 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDY 104 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCC
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCc
Confidence 34567677777777777777777777777777777643 3456677777777777777777777777777764 4456
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 102 IMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
..|..+..+|.+.|++++|...|++..+.
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67777777777777777777777777664
No 118
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.13 E-value=1.8e-09 Score=78.53 Aligned_cols=160 Identities=7% Similarity=-0.042 Sum_probs=99.8
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcC----CCC-CCHHHHHHHHHHHHh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE----NCF-PTLKFFSNALDILVK 76 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~ 76 (274)
....|++++|++.++.+... .+....++..+...+...|++++|...+++..+. +.. ....++..+...+..
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH---PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp -----CHHHHHHHHHHHHTS---TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 45678888888866555332 3346778888888888888888888888877651 111 123456677777788
Q ss_pred CCChhhHHHHHHHHHhcCCcc--C--ccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCC----hhhHHHHHHHHH
Q 048737 77 LNDSTHTVQLWDIMVGIGFNL--M--PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGA-FPD----SLTYNMIFECLI 147 (274)
Q Consensus 77 ~~~~~~a~~~~~~~~~~~~~~--~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~ 147 (274)
.|++++|...+++..+..... . .....+..+...+...|++++|...+++...... .++ ..++..+...+.
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 888888888887776541001 1 1244566777777778888888877777653210 011 233456666677
Q ss_pred hcCCHhHHHHHHHHHHh
Q 048737 148 KNKKVHEVENFFHEMIK 164 (274)
Q Consensus 148 ~~~~~~~a~~~~~~~~~ 164 (274)
..|++++|...+++..+
T Consensus 159 ~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHH
Confidence 77777777777666543
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.12 E-value=2.7e-10 Score=90.12 Aligned_cols=148 Identities=10% Similarity=0.019 Sum_probs=95.7
Q ss_pred cchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC----------------HHHHHH
Q 048737 6 GNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT----------------LKFFSN 69 (274)
Q Consensus 6 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ 69 (274)
+++++|++.|+..... .|.+...|..+...+.+.|++++|+..|++..+.. |+ ...|..
T Consensus 127 ~~~~~A~~~~~~a~~~---~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE---KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEECCCCGGGCCHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHH
Confidence 4555566565554433 56567788888888888888888888888887743 32 356666
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 048737 70 ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 149 (274)
Q Consensus 70 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 149 (274)
+..++.+.|++++|...++++++.. +.+...|..+..+|...|++++|...|++..+... .+...+..+...+...
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELD---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRI 277 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHH
Confidence 6666667777777777777666654 44566666666666667777777777666665421 2455666666666666
Q ss_pred CCHhHH-HHHHHHH
Q 048737 150 KKVHEV-ENFFHEM 162 (274)
Q Consensus 150 ~~~~~a-~~~~~~~ 162 (274)
|+.+++ ...+..|
T Consensus 278 ~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 278 RRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 666665 3344444
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.12 E-value=4.2e-09 Score=81.54 Aligned_cols=171 Identities=10% Similarity=0.007 Sum_probs=128.8
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCC-CCCCHH----HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCcc--
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGEN-CFPTLK----FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPN-- 100 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 100 (274)
....+...+..+...|++++|.+++++..+.. ..|+.. .+..+...+...++++.|...++++..... -.++
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~-~~~~~~ 152 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL-TGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC-CCSCTT
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc-ccccHH
Confidence 56677778889999999999999999988743 223321 334577777788899999999999987431 1122
Q ss_pred --HHhHHHHHHHHHhcCChhhHHHHHHHHHh----c-CCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCC
Q 048737 101 --LIMYNAVVGLLCNNNDVDNVFRFFDQMVF----H-GAFPD-SLTYNMIFECLIKNKKVHEVENFFHEMIKN----EWQ 168 (274)
Q Consensus 101 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~ 168 (274)
..+++.+..+|...|++++|...|+++.+ . +..+. ..+|..+...|.+.|++++|...+++..+. +..
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 34689999999999999999999998873 1 12222 357888999999999999999999887642 222
Q ss_pred CC-cchHHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 048737 169 PT-PLNCATAITMLLDADE-PEFAIEIWNYILE 199 (274)
Q Consensus 169 ~~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 199 (274)
+. ..+|..+..++.+.|+ +++|...+++...
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 22 4678888999999994 6999998888764
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.12 E-value=5.7e-08 Score=76.16 Aligned_cols=221 Identities=11% Similarity=0.104 Sum_probs=163.6
Q ss_pred cchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccC-cHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC-C-Chhh
Q 048737 6 GNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK-QVDEALKFLRVMKGENCFPTLKFFSNALDILVKL-N-DSTH 82 (274)
Q Consensus 6 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~ 82 (274)
+..++|+++++.+... .|.+..+|+.--..+...| .+++++++++.+.... +-+..+|+.-..++... + ++++
T Consensus 68 e~se~AL~lt~~~L~~---nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 68 EKSERALELTEIIVRM---NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp CCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 4557899999999766 8888899998888888888 5999999999998864 45677787777666665 6 8899
Q ss_pred HHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChh--------hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC---
Q 048737 83 TVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVD--------NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKK--- 151 (274)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--- 151 (274)
+..+++.+.+.. +.|..+|+.-..+..+.+.++ ++++.++++.+..+ -|...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~d---pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 144 EIEYIHGSLLPD---PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHTSSC---TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccccc
Confidence 999999999876 678888887777777766666 89999999988754 378888888887777776
Q ss_pred ----HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCh--------------------HHHHHHHHHHHHCC-----C
Q 048737 152 ----VHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEP--------------------EFAIEIWNYILENG-----I 202 (274)
Q Consensus 152 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~ 202 (274)
++++++.+++.+... +-|...|+.+-..+.+.|+. .........+...+ -
T Consensus 220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 678888888888753 34566777766666666553 22222222222211 1
Q ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 203 LPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 203 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
.++......++..|...|+.++|.++++.+.+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 366778888889999999999999999998755
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.12 E-value=1.4e-07 Score=73.00 Aligned_cols=224 Identities=11% Similarity=0.098 Sum_probs=175.7
Q ss_pred HHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC--ChhhHHHHHHHHHhcCCccCccHHhHHHHHHHH----
Q 048737 38 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN--DSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLL---- 111 (274)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 111 (274)
........++|+++++.++..+ +-+...|+.--..+...+ ++++++++++.+.... +-+..+|+.--.++
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---Pk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN---EKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---TTCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---cccHHHHHHHHHHHHHHH
Confidence 3344455579999999999853 345677888888888888 9999999999999876 55667777666555
Q ss_pred Hhc---CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHh--HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 048737 112 CNN---NDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVH--EVENFFHEMIKNEWQPTPLNCATAITMLLDADE 186 (274)
Q Consensus 112 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (274)
... +++++++++++++.+... .|-.+|+--.-.+.+.|+++ +++++++++++.. +-|...|+.-...+...+.
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGG
T ss_pred HhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 555 789999999999998753 47888988888888889888 9999999999865 3466777776666667676
Q ss_pred ------hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcch-HHHHHHHHHhCC--CccCHHHHHHHHHHHHhcChh
Q 048737 187 ------PEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSD-VRRFAEEMLNRR--ILIYDVTMQKLKKAFYNESRS 257 (274)
Q Consensus 187 ------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~ 257 (274)
++++.+.+.++....+ -|...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..+...+.+.|+.
T Consensus 196 ~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 196 LATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred cchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 8899999999988764 677889888888888888544 666777776543 234778888899999988877
Q ss_pred --HHHHHHHHHHH
Q 048737 258 --MRDRFDSLERR 268 (274)
Q Consensus 258 --a~~~~~~~~~~ 268 (274)
|.++++.+.++
T Consensus 275 ~~A~~~~~~l~~~ 287 (306)
T 3dra_A 275 NESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 99999988763
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.11 E-value=7.4e-10 Score=76.73 Aligned_cols=111 Identities=5% Similarity=-0.027 Sum_probs=91.1
Q ss_pred HHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHh
Q 048737 13 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVG 92 (274)
Q Consensus 13 ~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 92 (274)
..|+++. .+.|.+...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|+++..
T Consensus 8 ~~~~~al---~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 8 GTIAMLN---EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp CSHHHHT---TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHH---cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4455553 4478788888889999999999999999999888753 45678888888889999999999999999988
Q ss_pred cCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 93 IGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
.. +.+...+..+..+|...|++++|...|++..+.
T Consensus 84 l~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 84 MD---IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HS---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 65 556778888888999999999999999888764
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.09 E-value=3.6e-08 Score=72.25 Aligned_cols=129 Identities=9% Similarity=-0.063 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048737 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 145 (274)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (274)
.+..+...+...|++++|...|++.. +|+..++..+..+|.+.|++++|...|++..... +.+...|..+..+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 34556677888999999999998773 4577889999999999999999999999988763 3367788889999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCc----------------chHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048737 146 LIKNKKVHEVENFFHEMIKNEWQPTP----------------LNCATAITMLLDADEPEFAIEIWNYILENGI 202 (274)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 202 (274)
|...|++++|...|++..+.. +.+. ..+..+..++...|++++|...|++..+...
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999988753 1222 5677888889999999999999998887653
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.09 E-value=8.3e-10 Score=85.06 Aligned_cols=196 Identities=9% Similarity=-0.023 Sum_probs=132.6
Q ss_pred CchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHH
Q 048737 26 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYN 105 (274)
Q Consensus 26 p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (274)
|.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++++.+.. +.+...+.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~ 76 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHF 76 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 3467788889999999999999999999988753 3478888999999999999999999999999875 56678889
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 048737 106 AVVGLLCNNNDVDNVFRFFDQMVFHGAFPD-SLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDA 184 (274)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (274)
.+..+|...|++++|...|++..+.. |+ ...+...+....+. .++.. +..........+......+ ..+ ..
T Consensus 77 ~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~ 148 (281)
T 2c2l_A 77 FLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYL-TRL-IA 148 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HH
Confidence 99999999999999999999887642 22 11222222222211 11111 2223333333444443333 333 26
Q ss_pred CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc-CCcchHHHHHHHHHh
Q 048737 185 DEPEFAIEIWNYILENGILPLEASANVLLVGLRNL-GRLSDVRRFAEEMLN 234 (274)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 234 (274)
|+.++|.+.+++..+... .+......+-..+.+. +.+++|.++|.+..+
T Consensus 149 ~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 149 AERERELEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888888888887766432 3333444444444444 668889999987765
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.08 E-value=8.7e-09 Score=68.36 Aligned_cols=113 Identities=9% Similarity=0.098 Sum_probs=74.4
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHH
Q 048737 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVV 108 (274)
Q Consensus 29 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 108 (274)
...|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHH
Confidence 5567777777777777777777777776542 3456666777777777777777777777777654 44566677777
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048737 109 GLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 146 (274)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 146 (274)
.++...|++++|...|+++.+... .+...+..+...+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 777777777777777777665421 2344444444443
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.08 E-value=1e-08 Score=69.02 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=86.6
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhH
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMY 104 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (274)
.|.+...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...++++.+.. +.+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~ 87 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE---PTFIKGY 87 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCchHHH
Confidence 45567778888888888888888888888877653 3456777777788888888888888888887764 4566777
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048737 105 NAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 150 (274)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 150 (274)
..+..++.+.|++++|...|++..+... .+...+..+...+...|
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 7777888888888888888887766421 23455555555555443
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.07 E-value=9.5e-09 Score=72.06 Aligned_cols=131 Identities=10% Similarity=-0.011 Sum_probs=88.5
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
....|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+..++..+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~ 87 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHHH
Confidence 34566777777777888888888887777642 3456677777777777888888888887777764 4456677777
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHH--HHHHHHhcCCHhHHHHHHHHHH
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNM--IFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~~~~~~a~~~~~~~~ 163 (274)
..++...|++++|...|++..+... .+...+.. ....+...|++++|...+....
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777888888877777766532 23334432 3333556677777777766553
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.06 E-value=1e-07 Score=73.68 Aligned_cols=163 Identities=7% Similarity=0.032 Sum_probs=81.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCC-CCCh----hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-CCc----chHHHH
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGA-FPDS----LTYNMIFECLIKNKKVHEVENFFHEMIKNEWQ-PTP----LNCATA 177 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l 177 (274)
+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...+++..+.... ++. .+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4455556666666666666554311 1111 11223444444555666666666666553211 111 145556
Q ss_pred HHHHHhcCChHHHHHHHHHHHH----C-CCCcc-HHHHHHHHHHHHhcCCcchHHHHHHHHHhC----CCccC-HHHHHH
Q 048737 178 ITMLLDADEPEFAIEIWNYILE----N-GILPL-EASANVLLVGLRNLGRLSDVRRFAEEMLNR----RILIY-DVTMQK 246 (274)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~ 246 (274)
...|...|++++|...+++..+ . +..+. ..++..+...|...|++++|...+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6666666666666666665552 1 11111 235555666666666666666666655431 11111 345555
Q ss_pred HHHHHHhcC-h-h-HHHHHHHHHHHhh
Q 048737 247 LKKAFYNES-R-S-MRDRFDSLERRWK 270 (274)
Q Consensus 247 l~~~~~~~g-~-~-a~~~~~~~~~~~~ 270 (274)
+..++.+.| + . |.+.++++++..+
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 666666666 3 2 6666655555443
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.05 E-value=8.7e-09 Score=68.98 Aligned_cols=123 Identities=12% Similarity=0.061 Sum_probs=90.1
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhH
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMY 104 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (274)
.|.+...+..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~ 83 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID---PAYSKAY 83 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---ccCHHHH
Confidence 34466777888888888888888888888877642 3456777777888888888888888888887764 4456777
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 048737 105 NAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKV 152 (274)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 152 (274)
..+..++.+.|++++|...|++..+... .+...+..+..++...|++
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 7778888888888888888888776532 2556666666666666653
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.05 E-value=1.4e-08 Score=78.56 Aligned_cols=170 Identities=12% Similarity=-0.056 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCc----cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC---CCC-
Q 048737 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMP----NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGA---FPD- 135 (274)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~- 135 (274)
...+...+..+...|++++|.+.++...+... ..+ ....+..+...+...|++++|...+++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 34555667788888899999888888776541 011 123355566777888899999998888775321 111
Q ss_pred -hhhHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCC-----cchHHHHHHHHHhcCChHHHHHHHHHHHHCC----C-C
Q 048737 136 -SLTYNMIFECLIKNKKVHEVENFFHEMIKN-EWQPT-----PLNCATAITMLLDADEPEFAIEIWNYILENG----I-L 203 (274)
Q Consensus 136 -~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~ 203 (274)
..+|+.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|...+++..+.. . .
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 447888888888999999999998887632 01122 1477888888899999999999888876531 1 1
Q ss_pred ccHHHHHHHHHHHHhcCCcchH-HHHHHHHHh
Q 048737 204 PLEASANVLLVGLRNLGRLSDV-RRFAEEMLN 234 (274)
Q Consensus 204 ~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 234 (274)
.-..+|..+...|...|++++| ...+++...
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1256788888888999999988 676776543
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=3.6e-09 Score=71.09 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=87.4
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|.+.|++++|++.|++..+. .|.++.+|..+..++.+.|++++|+..|++.++.+ +.+...|..+..++...|+++
T Consensus 23 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 98 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWS 98 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHH
Confidence 56789999999999999776 88899999999999999999999999999998853 456889999999999999999
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVG 109 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (274)
+|.+.|++.++.. |.+...+..+-.
T Consensus 99 ~A~~~~~~al~l~---P~~~~a~~~l~~ 123 (126)
T 4gco_A 99 KAQRAYEDALQVD---PSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---cCCHHHHHHHHH
Confidence 9999999999965 445555555443
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.04 E-value=7.8e-09 Score=75.15 Aligned_cols=159 Identities=6% Similarity=-0.105 Sum_probs=95.5
Q ss_pred hccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCC---ccCccHHhHHHHHHHHHhcCC
Q 048737 40 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGF---NLMPNLIMYNAVVGLLCNNND 116 (274)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 116 (274)
...|++++|.+.++.+... .......+..+...+...|+++.|...+++...... ..+....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4567888888855444331 123456777777788888888888888877765210 012335567777777888888
Q ss_pred hhhHHHHHHHHHhc----CCCC--ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCC----cchHHHHHHHHHhcC
Q 048737 117 VDNVFRFFDQMVFH----GAFP--DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEW-QPT----PLNCATAITMLLDAD 185 (274)
Q Consensus 117 ~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~ 185 (274)
+++|...+++.... +..| ....+..+...+...|++++|...+++..+... ..+ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888887776543 1111 134566677777777777777777777653210 011 123455666666677
Q ss_pred ChHHHHHHHHHHHH
Q 048737 186 EPEFAIEIWNYILE 199 (274)
Q Consensus 186 ~~~~a~~~~~~~~~ 199 (274)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777766665543
No 134
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.03 E-value=1.6e-07 Score=80.64 Aligned_cols=235 Identities=9% Similarity=0.004 Sum_probs=174.6
Q ss_pred hHHHHHHHHHhccC-------cHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHH-HHHHHHHhcCCccCccH
Q 048737 30 LAYETFLITLIRGK-------QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTV-QLWDIMVGIGFNLMPNL 101 (274)
Q Consensus 30 ~~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~ 101 (274)
..|...+..--..+ ..+.+..+|++.... ++-++..|......+...|+.+.|. .+|++.... +|.+.
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~---~P~s~ 378 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC---IPNSA 378 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH---CTTCH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh---CCCCH
Confidence 45666665544432 234566788888775 4567888988888888999999996 999999975 46677
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhcCC---------CCC------------hhhHHHHHHHHHhcCCHhHHHHHHH
Q 048737 102 IMYNAVVGLLCNNNDVDNVFRFFDQMVFHGA---------FPD------------SLTYNMIFECLIKNKKVHEVENFFH 160 (274)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~li~~~~~~~~~~~a~~~~~ 160 (274)
..|..++....+.|++++|.++|+++.+... .|+ ...|...+....+.|+.+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888899999999999999999999876410 132 3468888888888999999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCcc
Q 048737 161 EMIKNEWQPTPLNCATAITMLLDA-DEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILI 239 (274)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 239 (274)
+.++.-..+....|...+..-.+. ++.+.|..+|+...+. .+-+...+...+......|+.+.|..+|+........+
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 998761112334444433333344 4599999999999885 33455677788888888999999999999998874322
Q ss_pred --CHHHHHHHHHHHHhcChh--HHHHHHHHHHHh
Q 048737 240 --YDVTMQKLKKAFYNESRS--MRDRFDSLERRW 269 (274)
Q Consensus 240 --~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~ 269 (274)
....|...+.--.+.|+. ++.+.+++.+..
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 335677777777788877 888888777654
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.01 E-value=2.3e-08 Score=70.05 Aligned_cols=127 Identities=9% Similarity=-0.039 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048737 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 145 (274)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (274)
.+..+...+...|+++.|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...|..+...
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 34455555666666666666666666543 3445556666666666666666666666655542 2245555566666
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCcchHH--HHHHHHHhcCChHHHHHHHHHH
Q 048737 146 LIKNKKVHEVENFFHEMIKNEWQPTPLNCA--TAITMLLDADEPEFAIEIWNYI 197 (274)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~ 197 (274)
+...|++++|...+++..+.. +.+...+. .....+...|++++|...+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666655432 11222222 2222244455555555555443
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.00 E-value=6.1e-09 Score=74.22 Aligned_cols=122 Identities=7% Similarity=0.080 Sum_probs=82.0
Q ss_pred HhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHH-HHhcCCh
Q 048737 39 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGL-LCNNNDV 117 (274)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 117 (274)
+...|++++|+..+++..+.. +.+...+..+...+...|+++.|...|+++.+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCCc
Confidence 345667777777777766642 3456677777777777788888888887777754 4456667777777 6677777
Q ss_pred --hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 048737 118 --DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 118 --~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (274)
++|...|++..+... .+...+..+...|...|++++|...+++..+.
T Consensus 96 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777776532 24666777777777777777777777777764
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.00 E-value=1.5e-09 Score=78.97 Aligned_cols=142 Identities=9% Similarity=-0.080 Sum_probs=66.8
Q ss_pred cchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCH----------------HHHHH
Q 048737 6 GNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL----------------KFFSN 69 (274)
Q Consensus 6 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ 69 (274)
|+++++.+.|+.-... .+.....+..+...+...|++++|+..|++..+.. +.+. ..+..
T Consensus 18 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDEE---KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp ----CCCSGGGCCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhccccCchhhCCHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHH
Confidence 4444444444432222 22244456666666666666666666666666531 1111 44444
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 048737 70 ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 149 (274)
Q Consensus 70 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 149 (274)
+..++...|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKID---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHH
Confidence 5555555555555555555555543 3344455555555555555555555555554431 11334444444444444
Q ss_pred CCHhHH
Q 048737 150 KKVHEV 155 (274)
Q Consensus 150 ~~~~~a 155 (274)
++..++
T Consensus 170 ~~~~~~ 175 (198)
T 2fbn_A 170 KEARKK 175 (198)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 443333
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.00 E-value=8.4e-08 Score=74.19 Aligned_cols=173 Identities=6% Similarity=-0.016 Sum_probs=124.4
Q ss_pred ccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC---CC
Q 048737 99 PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD-----SLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQ---PT 170 (274)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~ 170 (274)
.....+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+.+..+.... +.
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 3456777788888999999999999988776532211 123445666778888999999999988754211 11
Q ss_pred --cchHHHHHHHHHhcCChHHHHHHHHHHHH---C-CCCc--cHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC----Cc
Q 048737 171 --PLNCATAITMLLDADEPEFAIEIWNYILE---N-GILP--LEASANVLLVGLRNLGRLSDVRRFAEEMLNRR----IL 238 (274)
Q Consensus 171 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~ 238 (274)
..+++.+...|...|++++|...+++..+ . +..+ ...++..+...|...|++++|...+++..+.. ..
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 34788889999999999999999988873 2 1112 22578888899999999999999998876531 11
Q ss_pred c-CHHHHHHHHHHHHhcChh--H-HHHHHHHHHHhhh
Q 048737 239 I-YDVTMQKLKKAFYNESRS--M-RDRFDSLERRWKT 271 (274)
Q Consensus 239 ~-~~~~~~~l~~~~~~~g~~--a-~~~~~~~~~~~~~ 271 (274)
. -..+|..+..++...|+. | ...+++++...+.
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 1 156788888899998877 7 6777777665543
No 139
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.99 E-value=9.4e-09 Score=70.51 Aligned_cols=104 Identities=9% Similarity=-0.027 Sum_probs=85.6
Q ss_pred CCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHH
Q 048737 23 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLI 102 (274)
Q Consensus 23 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 102 (274)
...|.+...+..+...+.+.|++++|+..|++....+ +.+...|..+..++...|++++|...|++..... +.+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~ 87 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD---INEPR 87 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcH
Confidence 4477777888888888889999999999998888753 4567788888888888999999999999988875 55677
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
.+..+..+|...|++++|...|++..+.
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 88 FPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888888888999999999998888764
No 140
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.98 E-value=1.1e-08 Score=66.56 Aligned_cols=103 Identities=9% Similarity=-0.020 Sum_probs=78.3
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCc--cHH
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMP--NLI 102 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 102 (274)
.|.+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +. +..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~ 77 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI---EDEYNKD 77 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---CCTTCHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cccchHH
Confidence 45566777778888888888888888888877643 3456777777788888888888888888888764 34 567
Q ss_pred hHHHHHHHHHhc-CChhhHHHHHHHHHhcC
Q 048737 103 MYNAVVGLLCNN-NDVDNVFRFFDQMVFHG 131 (274)
Q Consensus 103 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 131 (274)
.+..+..++.+. |++++|.+.+++.....
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 777888888888 88888888888877653
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.98 E-value=4e-08 Score=65.10 Aligned_cols=95 Identities=8% Similarity=0.164 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048737 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 145 (274)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (274)
.+..+...+...|+++.|.+.++++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 34444444445555555555555544432 2334444444444444555555555554444331 1233444444444
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 048737 146 LIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~ 164 (274)
+...|++++|...++++.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 4444444444444444443
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.96 E-value=1.6e-09 Score=83.44 Aligned_cols=182 Identities=9% Similarity=-0.005 Sum_probs=125.4
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|.+.|++++|+..|++.... .|.+...|..+...+.+.|++++|+..+++..+.. +.+...+..+..++...|+++
T Consensus 14 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~ 89 (281)
T 2c2l_A 14 LFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYD 89 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 45789999999999999876 88889999999999999999999999999998753 456788999999999999999
Q ss_pred hHHHHHHHHHhcCCccCccH-HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNL-IMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFH 160 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (274)
+|...|++..+.. |+. ..+...+....+. .++. .+........+.+......+ ..+ ..|++++|.+.++
T Consensus 90 ~A~~~~~~al~l~----p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~~ 159 (281)
T 2c2l_A 90 EAIANLQRAYSLA----KEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERERELEECQ 159 (281)
T ss_dssp HHHHHHHHHHHHH----HHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhC----ccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHHHH
Confidence 9999999998754 321 1222222222211 1111 12222223334444444433 322 3688899998888
Q ss_pred HHHhCCCCCCc-chHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 048737 161 EMIKNEWQPTP-LNCATAITMLLDA-DEPEFAIEIWNYILE 199 (274)
Q Consensus 161 ~~~~~~~~~~~-~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 199 (274)
...+. .|+. .....+...+.+. +.+++|.++|.+..+
T Consensus 160 ~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 160 RNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp GGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 87764 3543 3333444444444 678889999987765
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.96 E-value=4e-08 Score=65.67 Aligned_cols=120 Identities=8% Similarity=-0.039 Sum_probs=66.6
Q ss_pred cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHH
Q 048737 100 NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAIT 179 (274)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 179 (274)
+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34455555666666666666666666655542 2245555566666666666666666666655532 223445555566
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCc
Q 048737 180 MLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRL 222 (274)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 222 (274)
.+...|++++|...+++..+... .+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 66666666666666666655432 2344555555555555543
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.96 E-value=3.1e-08 Score=68.59 Aligned_cols=95 Identities=7% Similarity=0.030 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048737 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 145 (274)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (274)
.+..+...+.+.|++++|...|+++.... |.+...|..+..+|.+.|++++|+..|++.....+ .+...|..+..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~ 113 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD---FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHH
Confidence 44444455555555555555555555543 33445555555555555555555555555554321 134455555555
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 048737 146 LIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~ 164 (274)
|...|++++|...|++..+
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555554
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.96 E-value=2.1e-09 Score=85.00 Aligned_cols=151 Identities=9% Similarity=0.076 Sum_probs=98.8
Q ss_pred CChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--------------hhhHHHHH
Q 048737 78 NDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD--------------SLTYNMIF 143 (274)
Q Consensus 78 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li 143 (274)
++++.|...|+...... +.+...+..+...|.+.|++++|...|++......... ..+|..+.
T Consensus 127 ~~~~~A~~~~~~a~~~~---p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK---LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHHH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 34455555554444322 22456677777777777777777777777766432211 36777777
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcc
Q 048737 144 ECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLS 223 (274)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 223 (274)
.+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|++..+... .+...+..+..++...|+.+
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHH
Confidence 77778888888888887777643 23456777777777788888888888877777542 34566777777777777777
Q ss_pred hH-HHHHHHHH
Q 048737 224 DV-RRFAEEML 233 (274)
Q Consensus 224 ~a-~~~~~~m~ 233 (274)
++ ..+++.|.
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77 34555553
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.96 E-value=3.6e-08 Score=66.22 Aligned_cols=97 Identities=6% Similarity=0.017 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 048737 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIF 143 (274)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 143 (274)
...+..+...+...|+++.|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN---PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 4445555555555555555655555555543 3344555555555555555555555555555432 12344555555
Q ss_pred HHHHhcCCHhHHHHHHHHHHh
Q 048737 144 ECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~ 164 (274)
..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555555544
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.95 E-value=3.6e-08 Score=65.92 Aligned_cols=99 Identities=10% Similarity=-0.046 Sum_probs=74.3
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
+...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++.++.. +.+...|..+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l 78 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHH
Confidence 55667777778888888888888888777643 4456777777788888888888888888887765 4456777777
Q ss_pred HHHHHhcCChhhHHHHHHHHHhc
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
..++...|++++|...|++..+.
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Confidence 77888888888888888777664
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.93 E-value=3.3e-08 Score=68.29 Aligned_cols=98 Identities=12% Similarity=-0.026 Sum_probs=55.6
Q ss_pred cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHH
Q 048737 100 NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAIT 179 (274)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 179 (274)
+...+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 44455555556666666666666666655542 1245555556666666666666666666655532 223445555566
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 048737 180 MLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~ 199 (274)
++...|++++|...|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665554
No 149
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.88 E-value=2.4e-08 Score=66.82 Aligned_cols=114 Identities=11% Similarity=0.159 Sum_probs=75.9
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCcc----HHh
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPN----LIM 103 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~ 103 (274)
....|..+...+...|++++|+..|++..+.. +.+...+..+...+...|+++.|...++++.....+..++ ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 45567777777888888888888888777643 4456677777777777888888888887777653100111 566
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 048737 104 YNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 144 (274)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 144 (274)
+..+..++.+.|++++|.+.|++..+. .|+......+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 777777777777777777777777664 345444444433
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.87 E-value=2.6e-07 Score=70.15 Aligned_cols=194 Identities=10% Similarity=-0.066 Sum_probs=143.2
Q ss_pred HHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHH-------HHHHHhCCChhhHHHHHHHHHhcCCccCcc----------
Q 048737 38 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA-------LDILVKLNDSTHTVQLWDIMVGIGFNLMPN---------- 100 (274)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------- 100 (274)
++ ..++...|.+.|.+..+.. +-....|..+ ...+.+.++...+...++..... .|+
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l----~p~~l~a~~~~~g 89 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI----SMSTLNARIAIGG 89 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC----CGGGGCCEEECCT
T ss_pred cc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC----ChhhhhhhhccCC
Confidence 44 6899999999999999864 3446777777 46666666666666666666552 221
Q ss_pred ------------HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 048737 101 ------------LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQ 168 (274)
Q Consensus 101 ------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 168 (274)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d 166 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-D 166 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-C
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-C
Confidence 2234556778889999999999999988754 444366666668899999999999998554421 1
Q ss_pred CC--cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc--cHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHH
Q 048737 169 PT--PLNCATAITMLLDADEPEFAIEIWNYILENGILP--LEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDV 242 (274)
Q Consensus 169 ~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 242 (274)
|. ...+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++... .|+..
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~ 242 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPK 242 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHH
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH
Confidence 11 2367788899999999999999999988544324 3446677778899999999999999999987 45533
No 151
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.87 E-value=1.9e-06 Score=67.65 Aligned_cols=233 Identities=12% Similarity=0.089 Sum_probs=169.7
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-ChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN-DSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 29 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
..+++.+-......+..++|++++++++..+ +-+..+|+.--..+...+ .++++..+++.+.... +-+..+|+.-
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n---PKny~aW~hR 129 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN---LKSYQVWHHR 129 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT---CCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---CCcHHHHHHH
Confidence 3345555555566667789999999999854 445677887777777888 5999999999999876 6778889888
Q ss_pred HHHHHhc-C-ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHh--------HHHHHHHHHHhCCCCCCcchHHHH
Q 048737 108 VGLLCNN-N-DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVH--------EVENFFHEMIKNEWQPTPLNCATA 177 (274)
Q Consensus 108 ~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l 177 (274)
..++.+. + ++++++++++++.+... .|-.+|+--.-.+.+.+.++ +++++++++++.. +-|...|+.-
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R 207 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWR 207 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 8887776 7 89999999999998643 37788877666666666566 8999999998864 4467788887
Q ss_pred HHHHHhcCC-------hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCc--------------------chHHHHHH
Q 048737 178 ITMLLDADE-------PEFAIEIWNYILENGILPLEASANVLLVGLRNLGRL--------------------SDVRRFAE 230 (274)
Q Consensus 178 ~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~ 230 (274)
...+.+.+. ++++.+.+.+.....+ -|...|+-+-..+.+.|+. .....+..
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF 286 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------C
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHH
Confidence 777777776 6888888888888653 5677787777777776654 33444444
Q ss_pred HHHhCC-----CccCHHHHHHHHHHHHhcChh--HHHHHHHHHHH
Q 048737 231 EMLNRR-----ILIYDVTMQKLKKAFYNESRS--MRDRFDSLERR 268 (274)
Q Consensus 231 ~m~~~~-----~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~ 268 (274)
++...+ -.++......+...|...|+. |.++++.+.++
T Consensus 287 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 287 PMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 443332 135778888899999988876 88888877643
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.85 E-value=2e-07 Score=60.91 Aligned_cols=99 Identities=14% Similarity=0.005 Sum_probs=62.0
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
++..+..+...+...|++++|+..|++..... +.+...+..+..++...|+++.|...+++..+.. +.+...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ 78 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---cccHHHHHHH
Confidence 34556666666666777777777776666532 3345566666666666666666666666666654 3345566666
Q ss_pred HHHHHhcCChhhHHHHHHHHHhc
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
..++...|++++|...+++..+.
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666666666554
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.85 E-value=1.4e-07 Score=66.23 Aligned_cols=102 Identities=5% Similarity=-0.061 Sum_probs=83.6
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhH
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMY 104 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (274)
.+.+...|..+...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|...|++.++.. +.+...|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~ 82 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD---PKYSKAW 82 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHH
Confidence 45567788888888889999999999998888753 3467788888888888899999999998888875 5567788
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 105 NAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
..+..+|.+.|++++|...|++..+.
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 88888888888899998888888765
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.84 E-value=1e-08 Score=74.57 Aligned_cols=124 Identities=9% Similarity=-0.069 Sum_probs=65.8
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---------------hhhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 048737 101 LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD---------------SLTYNMIFECLIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (274)
...+..+...+.+.|++++|...|++.......-. ...|..+..+|...|++++|+..+++.++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 33445555555555566666655555554311100 145555666666666666666666666553
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHH
Q 048737 166 EWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVR 226 (274)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 226 (274)
. +.+...+..+..++...|++++|...|++..+... -+...+..+..++...++.+++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22345556666666666666666666666655432 23445555555555555554444
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.84 E-value=9.9e-08 Score=64.01 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=31.2
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHh
Q 048737 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVG 92 (274)
Q Consensus 29 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 92 (274)
..++..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|...+++.++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555555555555555555554431 22344444555555555555555555555544
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.83 E-value=7.7e-08 Score=64.56 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CC----hhh
Q 048737 65 KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAF--PD----SLT 138 (274)
Q Consensus 65 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 138 (274)
..+..+...+.+.|++++|...|++.++.. |.+...|+.+..+|.+.|++++|++.+++..+.... ++ ..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 456778899999999999999999999875 567888999999999999999999999988764211 11 246
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHH
Q 048737 139 YNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATA 177 (274)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 177 (274)
|..+..++...|++++|++.|++.++. .||+.+...+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 788888999999999999999998773 5676655444
No 157
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.82 E-value=9.6e-09 Score=84.65 Aligned_cols=140 Identities=15% Similarity=0.061 Sum_probs=72.3
Q ss_pred chHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC---------------HHHHHHHH
Q 048737 7 NVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT---------------LKFFSNAL 71 (274)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~ 71 (274)
++++|++.|+..... .|.....|..+...+.+.|++++|+..|++..+.. +.+ ...|..+.
T Consensus 249 ~~~~A~~~~~~~~~~---~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 249 SFEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEECCCCGGGSCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHH
Confidence 445555555544333 45566778888888888888888888888877632 111 23444444
Q ss_pred HHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 048737 72 DILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKK 151 (274)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 151 (274)
.++.+.|++++|...++++++.. +.+...|..+..+|...|++++|...|++..+... -+...+..+..++.+.++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLD---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKE 400 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHH
Confidence 44445555555555555544433 23344444444444444555555544444444311 123344444444444444
Q ss_pred HhH
Q 048737 152 VHE 154 (274)
Q Consensus 152 ~~~ 154 (274)
.++
T Consensus 401 ~~~ 403 (457)
T 1kt0_A 401 HNE 403 (457)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.81 E-value=1.3e-07 Score=64.05 Aligned_cols=100 Identities=8% Similarity=-0.018 Sum_probs=62.7
Q ss_pred CchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHH
Q 048737 26 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYN 105 (274)
Q Consensus 26 p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (274)
|.++..|..+...+...|++++|+..|++..... +.+...+..+..++...|+++.|...+++..+.. +.+...+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~ 81 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHF 81 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---chhHHHHH
Confidence 3355666666666666667777766666666542 3345566666666666666666666666666654 34455666
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHh
Q 048737 106 AVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
.+..++...|++++|...|++..+
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666666554
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=3.4e-07 Score=62.64 Aligned_cols=101 Identities=13% Similarity=-0.040 Sum_probs=74.9
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCcc
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT----LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPN 100 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 100 (274)
.|.+...+..+...+...|++++|++.|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~ 98 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD---GGD 98 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---SCC
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---ccC
Confidence 3456777777888888888888888888887764 355 5667777777778888888888888777754 445
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 101 LIMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
...+..+..++...|++++|...|++..+.
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 667777777777888888888888777664
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.81 E-value=4.5e-06 Score=65.13 Aligned_cols=219 Identities=11% Similarity=0.042 Sum_probs=157.4
Q ss_pred ccchH-HHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCc----------HHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 048737 5 EGNVV-EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ----------VDEALKFLRVMKGENCFPTLKFFSNALDI 73 (274)
Q Consensus 5 ~g~~~-~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 73 (274)
.|.++ +|+++++.+... .|.+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-.-+
T Consensus 42 ~~e~s~eaL~~t~~~L~~---nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 42 AGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp TTCCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34444 789999999654 89888899876666555444 678999999998753 5577888877777
Q ss_pred HHhCC--ChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCC-hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-
Q 048737 74 LVKLN--DSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNND-VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN- 149 (274)
Q Consensus 74 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 149 (274)
+...+ .++++..+++.+.+.. +.|..+|+.-..+....|. ++++++.++++.+..+ -|..+|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d---prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHS
T ss_pred HhccCcccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhh
Confidence 77777 4889999999999986 7788899988888888888 5899999999998754 3788888776666554
Q ss_pred -------------CCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc-----------CChHHHHHHHHHHHHCCCCcc
Q 048737 150 -------------KKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDA-----------DEPEFAIEIWNYILENGILPL 205 (274)
Q Consensus 150 -------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~ 205 (274)
+.++++++.+...+... +-|...|+-+--.+... +.++++++.++++.+.. |+
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd 270 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PE 270 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TT
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--cc
Confidence 44778888888888753 33456666554444444 34678888888888754 44
Q ss_pred HHHHHHHHHH-----HHhcCCcchHHHHHHHHHhC
Q 048737 206 EASANVLLVG-----LRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 206 ~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~~ 235 (274)
. .|+.+-.+ ....|..+++...+.++.+-
T Consensus 271 ~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 271 N-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp C-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred c-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 2 33322221 12346666777778777754
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=1.8e-07 Score=62.51 Aligned_cols=95 Identities=8% Similarity=-0.059 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048737 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 145 (274)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (274)
.+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..+++..+... .+...|..+..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 44445555555666666666666655543 33455555555555566666666666655555321 134455555555
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 048737 146 LIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~ 164 (274)
+...|++++|...|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 5555555555555555544
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.80 E-value=3.8e-07 Score=59.57 Aligned_cols=96 Identities=10% Similarity=0.069 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 048737 65 KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 144 (274)
Q Consensus 65 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 144 (274)
..+..+...+...|+++.|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 344555555666666666666666666543 3345555566666666666666666666655542 123455555555
Q ss_pred HHHhcCCHhHHHHHHHHHHh
Q 048737 145 CLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~ 164 (274)
++...|++++|...+++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666665554
No 163
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.79 E-value=3e-08 Score=82.08 Aligned_cols=117 Identities=11% Similarity=0.052 Sum_probs=96.3
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|.+.|++++|++.|++..+. .|.+..+|..+..++.+.|++++|++.+++..+.. +.+...+..+..++...|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 56789999999999999776 88789999999999999999999999999999863 456788999999999999999
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHH--HHhcCChhhHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGL--LCNNNDVDNVFRFFD 125 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 125 (274)
+|.+.|+++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK---PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS---TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999865 3445566666666 888899999999998
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.77 E-value=2e-07 Score=63.80 Aligned_cols=95 Identities=4% Similarity=-0.068 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048737 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 145 (274)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (274)
.+..+...+.+.|++++|...|+++.... +.+...|..+..+|.+.|++++|...|++...... .+...+..+..+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 95 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD---HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHH
Confidence 34445555666666666666666666654 44555666666666666666666666666655421 234555566666
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 048737 146 LIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~ 164 (274)
|...|++++|...|++..+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666554
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.74 E-value=4.8e-07 Score=61.13 Aligned_cols=98 Identities=4% Similarity=-0.039 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 048737 63 TLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMI 142 (274)
Q Consensus 63 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (274)
+...+..+...+...|+++.|...|++..... +.+...|..+..++...|++++|...+++..+... .+...+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 44555555556666666666666666665543 33455555556666666666666666665555421 234555555
Q ss_pred HHHHHhcCCHhHHHHHHHHHHh
Q 048737 143 FECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~ 164 (274)
..+|...|++++|...|++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 5555566666666655555543
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.74 E-value=1.7e-07 Score=62.53 Aligned_cols=97 Identities=12% Similarity=0.150 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CCC----hhh
Q 048737 65 KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGA--FPD----SLT 138 (274)
Q Consensus 65 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~ 138 (274)
..+..+...+...|+++.|...|++..... +.+...+..+..++...|++++|...+++...... .++ ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 344555556666666666666666666543 34455566666666666666666666666554321 111 444
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 139 YNMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
+..+...+...|++++|...|++..+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555666666666555554
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.74 E-value=6.3e-07 Score=73.03 Aligned_cols=198 Identities=6% Similarity=-0.032 Sum_probs=139.2
Q ss_pred cccccchHHHHHHHHHHHhccCCCCc--------------hHhHHHHHHHHHhccCcHHHHHHHHHHHhcC-CCCCCH--
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPE--------------HVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTL-- 64 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~--------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-- 64 (274)
+.+.|++++|++.|..+.+...-..+ ...++..++..|...|++++|.+.+.++... +..++.
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 35679999999999998875111110 1124778999999999999999999987652 111222
Q ss_pred --HHHHHHHHHHHhCCChhhHHHHHHHHHhcC---CccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcC----CCC-
Q 048737 65 --KFFSNALDILVKLNDSTHTVQLWDIMVGIG---FNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHG----AFP- 134 (274)
Q Consensus 65 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~- 134 (274)
.+.+.+-..+...|+.+.+..+++...... .+...-..++..+...|...|++++|..++++....- -.+
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 123333344456789999999998876431 0012235678889999999999999999999876431 112
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC--CC-CC-C--cchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048737 135 DSLTYNMIFECLIKNKKVHEVENFFHEMIKN--EW-QP-T--PLNCATAITMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~-~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (274)
...++..++..|...|++++|..++++.... .+ .| . ...+..+...+...++++.|...|.+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2467889999999999999999999887643 11 11 1 23456667777888999999888877654
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.73 E-value=1.9e-07 Score=60.47 Aligned_cols=94 Identities=9% Similarity=-0.028 Sum_probs=43.0
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC--ChhhHHHHHH
Q 048737 67 FSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP--DSLTYNMIFE 144 (274)
Q Consensus 67 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~ 144 (274)
+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...|++..+.. +. +...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD---PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 3344444444555555555555544433 2334444444444445555555555554444431 11 2344444444
Q ss_pred HHHhc-CCHhHHHHHHHHHHh
Q 048737 145 CLIKN-KKVHEVENFFHEMIK 164 (274)
Q Consensus 145 ~~~~~-~~~~~a~~~~~~~~~ 164 (274)
.+... |++++|.+.++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 44444 444455444444443
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.70 E-value=5.9e-07 Score=62.96 Aligned_cols=99 Identities=6% Similarity=0.030 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 048737 63 TLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMI 142 (274)
Q Consensus 63 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (274)
+...+..+...+...|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..|++..+... .+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 35567777778888888888888888888765 45677788888888888888888888888777532 246777788
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhC
Q 048737 143 FECLIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~ 165 (274)
..+|...|++++|...|++.++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 88888888888888888887764
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.67 E-value=2.3e-08 Score=82.74 Aligned_cols=128 Identities=12% Similarity=0.042 Sum_probs=103.0
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|...++++.+.. +.+..++..+
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~l 80 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYYRR 80 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 44456666777889999999999999998853 4458899999999999999999999999999976 5678899999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCCHhHHHHHHH
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC--LIKNKKVHEVENFFH 160 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 160 (274)
..+|.+.|++++|.+.|++..+... .+...+..+..+ +.+.|++++|++.++
T Consensus 81 g~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 81 AASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999988632 234556666555 888899999999998
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.67 E-value=9.2e-08 Score=63.60 Aligned_cols=96 Identities=4% Similarity=-0.044 Sum_probs=84.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHH
Q 048737 31 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGL 110 (274)
Q Consensus 31 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (274)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 46667888999999999999999998853 4578888999999999999999999999999976 5567889999999
Q ss_pred HHhcCChhhHHHHHHHHHhc
Q 048737 111 LCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~ 130 (274)
+.+.|++++|...|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998875
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.67 E-value=2.7e-07 Score=61.28 Aligned_cols=96 Identities=4% Similarity=-0.067 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048737 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 145 (274)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 145 (274)
.+..+...+.+.|++++|...|+++++.. +.+...|..+..++.+.|++++|+..|++..+... -+...+..+..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 34566778889999999999999999875 56788899999999999999999999999988642 257788899999
Q ss_pred HHhcCCHhHHHHHHHHHHhC
Q 048737 146 LIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~ 165 (274)
+...|++++|...+++.++.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.66 E-value=2.1e-06 Score=69.96 Aligned_cols=201 Identities=5% Similarity=-0.063 Sum_probs=143.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHHhcCCCCC-C---------------HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCcc
Q 048737 34 TFLITLIRGKQVDEALKFLRVMKGENCFP-T---------------LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNL 97 (274)
Q Consensus 34 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 97 (274)
.-...+.+.|++++|++.|..+.+..... + ...+..+...|...|++++|.+.+.++...-..+
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 34567788999999999999988743211 1 1247788999999999999999999887532001
Q ss_pred Ccc---HHhHHHHHHHHHhcCChhhHHHHHHHHHh----cCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHhC--CC
Q 048737 98 MPN---LIMYNAVVGLLCNNNDVDNVFRFFDQMVF----HGAFPD-SLTYNMIFECLIKNKKVHEVENFFHEMIKN--EW 167 (274)
Q Consensus 98 ~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~ 167 (274)
... ..+.+.+-..+...|+++.|..+++.... .+..+. ..++..+...|...|++++|..++...... +.
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 111 12344444555667899999999987654 222222 467788999999999999999999988653 11
Q ss_pred --CCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCcc--HHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 168 --QPT-PLNCATAITMLLDADEPEFAIEIWNYILEN----GILPL--EASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 168 --~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
.+. ...+..++..|...|++++|..++++.... +.+|. ...+..+...+...|++++|...|.+..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111 346888899999999999999999887642 22222 34566677777888999999888777643
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.7e-06 Score=59.11 Aligned_cols=98 Identities=9% Similarity=0.024 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCcc---HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH
Q 048737 63 TLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPN---LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTY 139 (274)
Q Consensus 63 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (274)
+...+..+...+...|+++.|...|++..+.. +.+ ...+..+..+|...|++++|...+++..+.. +.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 45566666677777777777777777777643 222 5566666667777777777777777666542 2245566
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 140 NMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
..+..++...|++++|...|++..+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666677777777777766665
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.64 E-value=3.5e-07 Score=63.39 Aligned_cols=135 Identities=7% Similarity=-0.079 Sum_probs=79.7
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHhcCCC-CCC----HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCc---cCcc
Q 048737 29 VLAYETFLITLIRGKQVDEALKFLRVMKGENC-FPT----LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFN---LMPN 100 (274)
Q Consensus 29 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ 100 (274)
..++..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...+++..+.... ....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 44677777778888888888888877665210 111 135666677777777777777777776653200 0011
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcC----CCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 101 LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHG----AFP-DSLTYNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
..++..+..++...|++++|...+++..+.. ..+ ...++..+...+...|++++|...+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3456666666777777777777776654321 000 12345555555666666666666665554
No 176
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.63 E-value=3e-05 Score=64.36 Aligned_cols=247 Identities=8% Similarity=0.015 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhccCCCCchHhHHHHHHHHHh----ccCcHHHHHHHHHHHhcCCCCCC--HHHHH--------------
Q 048737 9 VEANKTFGEMVERFEWNPEHVLAYETFLITLI----RGKQVDEALKFLRVMKGENCFPT--LKFFS-------------- 68 (274)
Q Consensus 9 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~--~~~~~-------------- 68 (274)
+....+|+......|..|.+...|...+..+. ..++++.+.++|++.+.. ++. ...|.
T Consensus 65 ~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~ 142 (493)
T 2uy1_A 65 FKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITG 142 (493)
T ss_dssp -CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccH
Confidence 44566777766656666767778887777654 246777888888888763 221 11111
Q ss_pred ----------------------------------HHHHHHHhC--CC-----hhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 69 ----------------------------------NALDILVKL--ND-----STHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 69 ----------------------------------~l~~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
..+..-... +- .+.+..+|++++... +.+...|...
T Consensus 143 ~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~---p~~~~lW~~y 219 (493)
T 2uy1_A 143 KKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF---YYAEEVYFFY 219 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT---TTCHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC---CCCHHHHHHH
Confidence 111110010 00 233566777777653 5567778888
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHH----------------------------------------HHHHHHH
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYN----------------------------------------MIFECLI 147 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------------------------------~li~~~~ 147 (274)
+..+.+.|+.+.|..+|++.... +.+...|. ..+....
T Consensus 220 a~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~ 297 (493)
T 2uy1_A 220 SEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297 (493)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH
Confidence 88888889999999999988776 22222221 1122222
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHH
Q 048737 148 KNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLD-ADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVR 226 (274)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 226 (274)
+.++++.|..+|++. ... ..+...|......-.. .++++.|..+|+...+.-. -+...+...+......|+.+.|.
T Consensus 298 r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 344455566666655 211 1122222211111111 2246666666666555321 12233444555555566666666
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHHHhh
Q 048737 227 RFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLERRWK 270 (274)
Q Consensus 227 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~~~~ 270 (274)
.+|+.+.+ ....|...+.-=...|+. ++.++++..+..+
T Consensus 375 ~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 375 ALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 66666521 234444444444445555 5556666555443
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.62 E-value=8.8e-07 Score=59.13 Aligned_cols=95 Identities=4% Similarity=-0.130 Sum_probs=71.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCcc---HHhHH
Q 048737 32 YETFLITLIRGKQVDEALKFLRVMKGENCFPTL---KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPN---LIMYN 105 (274)
Q Consensus 32 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~ 105 (274)
+..+...+...|++++|++.|++..+.. +.+. ..+..+..++...|++++|...|+++.+.. +.+ ..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CCCcccHHHHH
Confidence 4456677788888888888888887642 2222 466777788888888888888888888764 333 56677
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 106 AVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
.+..++.+.|++++|...|+++.+.
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888888888888888775
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.61 E-value=1.9e-07 Score=61.55 Aligned_cols=90 Identities=11% Similarity=-0.081 Sum_probs=61.9
Q ss_pred cccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhH
Q 048737 4 KEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83 (274)
Q Consensus 4 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (274)
..|++++|+..|++..+...-.|.+..+|..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 45778888888887755300036667778888888888888888888888877653 34567777777888888888888
Q ss_pred HHHHHHHHhcC
Q 048737 84 VQLWDIMVGIG 94 (274)
Q Consensus 84 ~~~~~~~~~~~ 94 (274)
...+++.....
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 88888777653
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.58 E-value=7.1e-07 Score=61.78 Aligned_cols=133 Identities=12% Similarity=0.049 Sum_probs=67.9
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCC----c
Q 048737 102 IMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAF-PD----SLTYNMIFECLIKNKKVHEVENFFHEMIKNEW-QPT----P 171 (274)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~ 171 (274)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+... .++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34455555555556666665555554432100 01 13455555556666666666666655543210 011 2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-ccHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 172 LNCATAITMLLDADEPEFAIEIWNYILEN----GIL-PLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
..+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555666666666666666655432 111 1123455566666667777777776666543
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.57 E-value=2.1e-06 Score=57.28 Aligned_cols=94 Identities=9% Similarity=-0.078 Sum_probs=68.2
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhcCCccCccH---HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---hhhHHH
Q 048737 68 SNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNL---IMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD---SLTYNM 141 (274)
Q Consensus 68 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 141 (274)
..+...+...|++++|...|+++.+.. +.+. ..+..+..++.+.|++++|...|++..+.... + ...+..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 345566777888888888888887754 2233 46777778888888888888888887765321 2 456777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhC
Q 048737 142 IFECLIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~~ 165 (274)
+..++...|++++|...|+.+.+.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777888888888888888887764
No 181
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.56 E-value=1.3e-05 Score=66.58 Aligned_cols=206 Identities=9% Similarity=-0.040 Sum_probs=141.3
Q ss_pred hHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHH
Q 048737 8 VVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLW 87 (274)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 87 (274)
.+.+..+|+++... .|.++..|...+..+.+.|++++|..+|++.... +.+...+. .|....+.+.. +
T Consensus 195 ~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~ 262 (493)
T 2uy1_A 195 ESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---Y 262 (493)
T ss_dssp HHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---H
T ss_pred HHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---H
Confidence 35567889988775 5667889999999999999999999999999986 33333322 22222222222 3
Q ss_pred HHHHhcC---C-------ccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCCHhHHH
Q 048737 88 DIMVGIG---F-------NLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI-KNKKVHEVE 156 (274)
Q Consensus 88 ~~~~~~~---~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~ 156 (274)
+.+.+.- . .......+|...+....+.++.+.|..+|++. .. ...+...|......-. ..++++.|.
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar 340 (493)
T 2uy1_A 263 GDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPY 340 (493)
T ss_dssp HHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHH
Confidence 3332210 0 00122356788888888888999999999999 32 2223444443222222 234699999
Q ss_pred HHHHHHHhCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 157 NFFHEMIKNEWQPT-PLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 157 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
.+|+...+.- |+ +..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 341 ~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 341 NIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998752 33 3455667777788899999999999872 3567888888877888999999999988864
No 182
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.56 E-value=3.8e-05 Score=59.95 Aligned_cols=183 Identities=9% Similarity=0.010 Sum_probs=140.4
Q ss_pred hHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccC--cHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-hhhHH
Q 048737 8 VVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK--QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND-STHTV 84 (274)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~ 84 (274)
+++++.+++.+... .|.+..+|+.-.-.+...+ .+++++.+++.+.+.. +-|...|+--.-++...|. ++++.
T Consensus 90 l~~EL~~~~~~L~~---~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRV---NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68899999999776 8989999999888888887 4899999999999864 5578888888777888888 58999
Q ss_pred HHHHHHHhcCCccCccHHhHHHHHHHHHhc--------------CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-
Q 048737 85 QLWDIMVGIGFNLMPNLIMYNAVVGLLCNN--------------NDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN- 149 (274)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 149 (274)
+.++.+++.. +.|...|+.....+.+. +.++++++.+++.....+ -|...|+-+-..+.+.
T Consensus 166 ~~~~~~I~~~---p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~ 241 (331)
T 3dss_A 166 AFTDSLITRN---FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGS 241 (331)
T ss_dssp HHHHHHHHHC---SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHC---CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcc
Confidence 9999999986 67888888877776665 457889999999887643 3677887655555444
Q ss_pred ----------CCHhHHHHHHHHHHhCCCCCCcchHHHHH-----HHHHhcCChHHHHHHHHHHHHCC
Q 048737 150 ----------KKVHEVENFFHEMIKNEWQPTPLNCATAI-----TMLLDADEPEFAIEIWNYILENG 201 (274)
Q Consensus 150 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~ 201 (274)
+.++++++.++++.+. .||. .|..+. ......+..+++...+.++.+.+
T Consensus 242 ~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 242 GRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred CccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 3477899999999874 5765 343222 22224567778888999988755
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.54 E-value=2.7e-06 Score=59.37 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=35.9
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 101 LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
...|..+..+|.+.|++++|+..+++..... +.+...|..+..+|...|++++|...|++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3455555566666666666666666655542 12355555566666666666666666665554
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.53 E-value=9.2e-07 Score=70.71 Aligned_cols=116 Identities=8% Similarity=-0.050 Sum_probs=69.4
Q ss_pred cccccchHHHHHHHHHHHhcc-------------CCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHH
Q 048737 2 WEKEGNVVEANKTFGEMVERF-------------EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 68 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 68 (274)
|.+.|++++|++.|++..+.. ...|.+..+|..+..++.+.|++++|++.+++..+.. +.+...+.
T Consensus 233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~ 311 (370)
T 1ihg_A 233 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALY 311 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHH
Confidence 346678888888888776510 0244455566666666666666666666666666542 23455666
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHH
Q 048737 69 NALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVF 121 (274)
Q Consensus 69 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 121 (274)
.+..++...|++++|...|+++.+.. +.+...+..+..++.+.++.+++.
T Consensus 312 ~lg~~~~~~g~~~eA~~~l~~Al~l~---P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 312 RRAQGWQGLKEYDQALADLKKAQEIA---PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666643 334555555555555555544443
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.52 E-value=2.8e-06 Score=69.95 Aligned_cols=130 Identities=8% Similarity=-0.007 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCcc---------------HHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048737 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPN---------------LIMYNAVVGLLCNNNDVDNVFRFFDQMV 128 (274)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (274)
...+..+...+.+.|+++.|...|+++++.. +.+ ...|..+..+|.+.|++++|+..+++.+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL---EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3456677778888888888888888887753 222 4677777777888888888888888777
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHH-HHHHHH
Q 048737 129 FHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIE-IWNYIL 198 (274)
Q Consensus 129 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~ 198 (274)
+... .+...|..+..+|...|++++|...|++.++.. +-+...+..+..++.+.++.+++.. .+..|.
T Consensus 345 ~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 345 GLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6532 356777777777788888888888887777643 2244566677777777777666553 344443
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.52 E-value=1.6e-06 Score=60.59 Aligned_cols=104 Identities=12% Similarity=0.013 Sum_probs=87.1
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcC-------CC----------CCCHHHHHHHHHHHHhCCChhhHHHHHHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGE-------NC----------FPTLKFFSNALDILVKLNDSTHTVQLWDIM 90 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 90 (274)
.+..+......+.+.|++++|+..|.+.... +- +.+...|..+..++.+.|+++.|...+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4667888899999999999999999988764 11 122367888889999999999999999999
Q ss_pred HhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh
Q 048737 91 VGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS 136 (274)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 136 (274)
++.. +.+...|..+..+|...|++++|...|++.... .|+.
T Consensus 90 l~~~---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 90 LKRE---ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HhcC---CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 9976 667889999999999999999999999999885 4543
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.50 E-value=5.5e-07 Score=71.14 Aligned_cols=149 Identities=7% Similarity=-0.035 Sum_probs=69.6
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
....+..+...+.+.|++++|+..|++.... .|+... +...++.+.+... + ....|..+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~---l---------~~~~~~nl 236 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALA---V---------KNPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHH---H---------HTHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHH---H---------HHHHHHHH
Confidence 4556677777777888888888888777653 243221 1111111111110 0 11256667
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-cchHHHHHHHH-HhcC
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT-PLNCATAITML-LDAD 185 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~~~ 185 (274)
..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+. .|+ ...+..+.... ...+
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH
Confidence 777777777777777777776642 225667777777777777777777777776553 233 33444444432 2345
Q ss_pred ChHHHHHHHHHHHHC
Q 048737 186 EPEFAIEIWNYILEN 200 (274)
Q Consensus 186 ~~~~a~~~~~~~~~~ 200 (274)
..+.+...|.++...
T Consensus 314 ~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 314 LYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHhhCC
Confidence 566666777776653
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.49 E-value=2.7e-06 Score=68.02 Aligned_cols=122 Identities=6% Similarity=-0.112 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHhcCC-------------ccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 048737 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGF-------------NLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGA 132 (274)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 132 (274)
.+..+...+.+.|++++|...|+++++.-. .-+.+..+|..+..+|.+.|++++|+..+++..+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 355666677777777777777777765100 0123345566666666666666666666666665421
Q ss_pred CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhcCChHHH
Q 048737 133 FPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQP-TPLNCATAITMLLDADEPEFA 190 (274)
Q Consensus 133 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 190 (274)
.+...|..+..+|...|++++|...|++..+. .| +...+..+..++...++.+++
T Consensus 305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 24556666666666666666666666666553 23 233444444444444444443
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.47 E-value=4.3e-07 Score=59.83 Aligned_cols=86 Identities=7% Similarity=-0.016 Sum_probs=35.7
Q ss_pred CChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 048737 78 NDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVEN 157 (274)
Q Consensus 78 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 157 (274)
|++++|...|++.++.+.+-+.+...+..+..+|.+.|++++|...|++..+..+ -+...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444444443100022233444444444444445555444444444321 123444444444444455555544
Q ss_pred HHHHHHh
Q 048737 158 FFHEMIK 164 (274)
Q Consensus 158 ~~~~~~~ 164 (274)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.46 E-value=9.1e-06 Score=68.66 Aligned_cols=173 Identities=10% Similarity=0.037 Sum_probs=139.0
Q ss_pred chHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCc----------HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048737 7 NVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ----------VDEALKFLRVMKGENCFPTLKFFSNALDILVK 76 (274)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (274)
.-++|++.++.+... .|++..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|..-.-++.+
T Consensus 44 ~~eeal~~~~~~l~~---nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 346778999998776 89889999988888877777 899999999999864 4567888888888888
Q ss_pred CC--ChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----
Q 048737 77 LN--DSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNN-DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN---- 149 (274)
Q Consensus 77 ~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 149 (274)
.+ +++++...++++.+.. +.|..+|+.-..+..+.| .++++++.++++.+..+ -|..+|+.....+...
T Consensus 120 l~~~~~~~el~~~~k~l~~d---~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCC
T ss_pred cccccHHHHHHHHHHHHhhc---cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccc
Confidence 88 6799999999999987 678899998888888888 89999999999988754 3788888877776663
Q ss_pred ----------CCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChH
Q 048737 150 ----------KKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPE 188 (274)
Q Consensus 150 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (274)
+.++++.+.+++.+... +-|...|..+-..+.+.++.+
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 45788999998888753 335677877777776666633
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.45 E-value=7.1e-07 Score=70.49 Aligned_cols=138 Identities=11% Similarity=0.030 Sum_probs=76.5
Q ss_pred cccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChh
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 81 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (274)
|.+.|++++|+..|++.... .|.+. .+...++.+++...+. ...|..+..++.+.|+++
T Consensus 189 ~~~~g~~~~A~~~y~~Al~~---~p~~~--------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g~~~ 247 (338)
T 2if4_A 189 LFKEEKLEEAMQQYEMAIAY---MGDDF--------MFQLYGKYQDMALAVK----------NPCHLNIAACLIKLKRYD 247 (338)
T ss_dssp TCSSSCCHHHHHHHHHHHHH---SCHHH--------HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTTTCCH
T ss_pred HHhcCCHHHHHHHHHHHHHH---hccch--------hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHcCCHH
Confidence 56789999999999998765 56332 1334455555443331 136777888888888888
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHH-HHhcCCHhHHHHHH
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP-DSLTYNMIFEC-LIKNKKVHEVENFF 159 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~-~~~~~~~~~a~~~~ 159 (274)
.|...+++.++.. +.+...|..+..+|...|++++|...|++..+. .| +...+..+... ....+..+++...|
T Consensus 248 ~A~~~~~~al~~~---p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 248 EAIGHCNIVLTEE---EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888765 456778888888888888888888888888764 33 34445544444 23445667777788
Q ss_pred HHHHhC
Q 048737 160 HEMIKN 165 (274)
Q Consensus 160 ~~~~~~ 165 (274)
..|...
T Consensus 323 ~~~l~~ 328 (338)
T 2if4_A 323 KGIFKG 328 (338)
T ss_dssp ------
T ss_pred HHhhCC
Confidence 877653
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.44 E-value=1.4e-05 Score=54.19 Aligned_cols=112 Identities=9% Similarity=0.020 Sum_probs=68.6
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCh
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK----LNDS 80 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 80 (274)
.+++++|++.|++..+. | .| .+. |...|...+.+++|+++|++..+.| ++..+..|...|.. .+++
T Consensus 8 ~~d~~~A~~~~~~aa~~-g-~~---~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-N-EM---FGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CT---THH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred ccCHHHHHHHHHHHHcC-C-CH---hhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 45666777777766664 3 22 222 5566666666666777777666653 45556666666665 5666
Q ss_pred hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHh----cCChhhHHHHHHHHHhcC
Q 048737 81 THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCN----NNDVDNVFRFFDQMVFHG 131 (274)
Q Consensus 81 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 131 (274)
++|...|++..+.| +...+..|...|.. .+++++|...|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLN-----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 67777776666655 34555666666666 566666666666666554
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.42 E-value=1.4e-06 Score=72.06 Aligned_cols=125 Identities=15% Similarity=0.073 Sum_probs=88.6
Q ss_pred ccCcHHHHHHHHHHHhcC---CCCCC----HHHHHHHHHHHHhCCChhhHHHHHHHHHh-----cCCccCccHHhHHHHH
Q 048737 41 RGKQVDEALKFLRVMKGE---NCFPT----LKFFSNALDILVKLNDSTHTVQLWDIMVG-----IGFNLMPNLIMYNAVV 108 (274)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~l~ 108 (274)
..|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++.++ .|.+.+....+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 567888888888776541 12232 45678888888888888888888887764 2433344566788888
Q ss_pred HHHHhcCChhhHHHHHHHHHh-----cCC-CCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 048737 109 GLLCNNNDVDNVFRFFDQMVF-----HGA-FPD-SLTYNMIFECLIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (274)
..|...|++++|+.++++..+ .|. .|+ ..+.+.+-.++...+.+++|+.+|..+++.
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998888887653 231 122 344566667777888889999888888763
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.37 E-value=2.4e-05 Score=53.09 Aligned_cols=111 Identities=8% Similarity=-0.050 Sum_probs=62.3
Q ss_pred CcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHh----cCChh
Q 048737 43 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCN----NNDVD 118 (274)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 118 (274)
+++++|+++|++..+.| .|+.. |...|...+.++.|.+.|++..+.| +...+..|...|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCccHH
Confidence 35566666666666655 22222 4445555555666666666666655 44555555555555 55666
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHHHHhCC
Q 048737 119 NVFRFFDQMVFHGAFPDSLTYNMIFECLIK----NKKVHEVENFFHEMIKNE 166 (274)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~ 166 (274)
+|.+.|++..+.| +...+..|...|.. .+++++|...|++..+.|
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666665542 44455555555555 555666666666555544
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.36 E-value=7.9e-06 Score=56.34 Aligned_cols=28 Identities=14% Similarity=-0.104 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHHhc
Q 048737 30 LAYETFLITLIRGKQVDEALKFLRVMKG 57 (274)
Q Consensus 30 ~~~~~li~~~~~~~~~~~a~~~~~~~~~ 57 (274)
..+......+.+.|++++|+..|++.++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~ 39 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME 39 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3455566677777777777777777766
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.34 E-value=1.5e-06 Score=59.78 Aligned_cols=87 Identities=9% Similarity=-0.049 Sum_probs=61.7
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcH----------HHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV----------DEALKFLRVMKGENCFPTLKFFSNALD 72 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~ 72 (274)
.+.+.+++|.+.++...+. .|.++..|..+..++...+++ ++|+..|++.++.+ +-+..+|..+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 3567889999999988776 888899999888888888765 47777777766642 224556666666
Q ss_pred HHHhCC-----------ChhhHHHHHHHHHhc
Q 048737 73 ILVKLN-----------DSTHTVQLWDIMVGI 93 (274)
Q Consensus 73 ~~~~~~-----------~~~~a~~~~~~~~~~ 93 (274)
+|...| ++++|.+.|+++++.
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 666553 566666666666663
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.31 E-value=6.1e-05 Score=63.63 Aligned_cols=177 Identities=8% Similarity=-0.017 Sum_probs=136.1
Q ss_pred ccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC----------hhhHHHHHHHHHhcCCccCccHHhHHHHHHH
Q 048737 41 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND----------STHTVQLWDIMVGIGFNLMPNLIMYNAVVGL 110 (274)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (274)
.....++|++.++++...+ +-+...|+.--.++...++ ++++.+.++.+.+.. +-+..+|+.-..+
T Consensus 41 ~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~---pK~y~aW~hR~w~ 116 (567)
T 1dce_A 41 AGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYGTWHHRCWL 116 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 3445578899999998853 3346677766666666666 899999999999976 6788899998888
Q ss_pred HHhcC--ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc---
Q 048737 111 LCNNN--DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK-KVHEVENFFHEMIKNEWQPTPLNCATAITMLLDA--- 184 (274)
Q Consensus 111 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 184 (274)
+.+.+ +++++++.++++.+...+ |..+|+.-...+.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccc
Confidence 99999 669999999999987543 7888988888888888 8999999999998754 34567777776666653
Q ss_pred -----------CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcch
Q 048737 185 -----------DEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSD 224 (274)
Q Consensus 185 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 224 (274)
+.++++.+.+.+...... -+...|+-+-..+.+.++.++
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 456888888888887653 456777777777777666443
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.29 E-value=4.7e-06 Score=54.48 Aligned_cols=81 Identities=17% Similarity=0.119 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHH
Q 048737 9 VEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWD 88 (274)
Q Consensus 9 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 88 (274)
++|++.|++..+. .|.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...|+
T Consensus 2 ~~a~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 2 QAITERLEAMLAQ---GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHTT---TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566777777554 67777788888888888888888888888877643 3456677777788888888888888888
Q ss_pred HHHhc
Q 048737 89 IMVGI 93 (274)
Q Consensus 89 ~~~~~ 93 (274)
+..+.
T Consensus 78 ~al~~ 82 (115)
T 2kat_A 78 SGLAA 82 (115)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77764
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.29 E-value=1.5e-05 Score=65.92 Aligned_cols=127 Identities=7% Similarity=-0.087 Sum_probs=96.8
Q ss_pred HHhCCChhhHHHHHHHHHhc-----CCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-----C-CCCC-hhhHHH
Q 048737 74 LVKLNDSTHTVQLWDIMVGI-----GFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH-----G-AFPD-SLTYNM 141 (274)
Q Consensus 74 ~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~ 141 (274)
+...|++++|+.++++..+. |.+.+....+++.|..+|...|++++|..++++.++. | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34678999999999888753 2212234678999999999999999999999887542 2 2233 567899
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHh-----CCC-CCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048737 142 IFECLIKNKKVHEVENFFHEMIK-----NEW-QPT-PLNCATAITMLLDADEPEFAIEIWNYILEN 200 (274)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (274)
|...|...|++++|+.++++..+ .|- .|+ ..+.+.+-.++...+.++.|+.++.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998764 231 222 234566777888899999999999999873
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.3e-06 Score=56.60 Aligned_cols=94 Identities=13% Similarity=-0.019 Sum_probs=60.3
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCcc------H
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPN------L 101 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~ 101 (274)
+...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT---STAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC---SSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCccHHHHHH
Confidence 45567777777777777777777777776642 3456667777777777777777777777777654 222 4
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHH
Q 048737 102 IMYNAVVGLLCNNNDVDNVFRFFD 125 (274)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~ 125 (274)
..+..+..++...|+.+.|...++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHH
Confidence 445555555555555555544443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.27 E-value=1.4e-05 Score=49.42 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=48.8
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCHHHHHHH
Confidence 44556666666666777777777776666532 3345556666666666666666666666666643 3344455555
Q ss_pred HHHHHh
Q 048737 108 VGLLCN 113 (274)
Q Consensus 108 ~~~~~~ 113 (274)
..++.+
T Consensus 84 ~~~~~~ 89 (91)
T 1na3_A 84 GNAKQK 89 (91)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444443
No 202
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.26 E-value=2.1e-05 Score=54.22 Aligned_cols=95 Identities=8% Similarity=-0.012 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCcc-------------HHhHHHHHHHHHhcCChhhHHHHHHHHHhc--
Q 048737 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPN-------------LIMYNAVVGLLCNNNDVDNVFRFFDQMVFH-- 130 (274)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 130 (274)
.+......+.+.|++++|...|++.++.. |+ ...|+.+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~----p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS----HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH----TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC----CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 34556667778888888888888888754 32 226666667777777777777777666653
Q ss_pred ---CCCCC-hhhH----HHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 131 ---GAFPD-SLTY----NMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 131 ---~~~~~-~~~~----~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
.+.|+ ...| .....++...|++++|+..|++.++
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 01333 4455 5666666666666666666666554
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.19 E-value=1e-05 Score=52.11 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4455566666666777777777777766654 445666666666677777777777777666654
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.15 E-value=3.4e-05 Score=50.25 Aligned_cols=77 Identities=8% Similarity=0.117 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 048737 83 TVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
|...|++..+.. +.+...+..+..+|...|++++|...|++..+... .+...|..+..+|...|++++|...|++.
T Consensus 4 a~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG---TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444432 23344444444444444444444444444444321 12334444444444444444444444444
Q ss_pred H
Q 048737 163 I 163 (274)
Q Consensus 163 ~ 163 (274)
.
T Consensus 80 l 80 (115)
T 2kat_A 80 L 80 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.08 E-value=1.6e-05 Score=50.56 Aligned_cols=68 Identities=7% Similarity=0.172 Sum_probs=49.1
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhc
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGI 93 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 93 (274)
.|+++.+|..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46677777778888888888888888888777653 334667777777777888888888877777653
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.07 E-value=6.6e-05 Score=46.27 Aligned_cols=61 Identities=10% Similarity=0.179 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
.+..+...+...|++++|...|++..+.. +.+..++..+..++.+.|++++|...|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444445555555555555555555433 23344444555555555555555555555444
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.04 E-value=2e-05 Score=54.18 Aligned_cols=92 Identities=10% Similarity=-0.002 Sum_probs=45.8
Q ss_pred CChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCCh----------hhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 048737 78 NDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDV----------DNVFRFFDQMVFHGAFPDSLTYNMIFECLI 147 (274)
Q Consensus 78 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 147 (274)
+.+++|.+.+++..+.. +.+...|+.+..++...+++ ++|+..|++.++... -+..+|..+..+|.
T Consensus 16 ~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHH
Confidence 34455555555555543 33445555555555544443 355555555555321 13445555555555
Q ss_pred hc-----------CCHhHHHHHHHHHHhCCCCCCcchHH
Q 048737 148 KN-----------KKVHEVENFFHEMIKNEWQPTPLNCA 175 (274)
Q Consensus 148 ~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~ 175 (274)
.. |++++|+..|++.++ +.|+...|.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~ 128 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYL 128 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHH
Confidence 44 356666666666655 345544443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.95 E-value=6e-05 Score=47.79 Aligned_cols=64 Identities=11% Similarity=0.055 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 63 TLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 63 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
+...+..+..++...|++++|...|+++++.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD---PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666666667777777777777776654 34455666666777777777777777666554
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.80 E-value=0.00077 Score=53.06 Aligned_cols=64 Identities=14% Similarity=-0.019 Sum_probs=35.4
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048737 135 DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN 200 (274)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (274)
+..+|..+...+...|++++|...++++...+ |+...|..+...+...|++++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44555555444444566666666666655543 45445555555555566666666666555553
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.78 E-value=0.00067 Score=53.38 Aligned_cols=74 Identities=9% Similarity=0.031 Sum_probs=53.9
Q ss_pred CccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHH
Q 048737 98 MPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCA 175 (274)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 175 (274)
+.+..+|..+...+...|++++|...+++....+ |+...|..+...+...|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5566777777766666788888888888887754 67777777777778888888888888877763 46655543
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.64 E-value=0.00047 Score=56.07 Aligned_cols=61 Identities=7% Similarity=0.034 Sum_probs=27.2
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhc-----C-CCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 048737 102 IMYNAVVGLLCNNNDVDNVFRFFDQMVFH-----G-AFPD-SLTYNMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
.+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|...|...|++++|+.++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34444445555555555554444443321 1 1111 234444555555555555555555444
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.62 E-value=0.00019 Score=58.39 Aligned_cols=87 Identities=9% Similarity=0.066 Sum_probs=65.0
Q ss_pred CcHHHHHHHHHHHhc---CCCCCC----HHHHHHHHHHHHhCCChhhHHHHHHHHHh-----cCCccCccHHhHHHHHHH
Q 048737 43 KQVDEALKFLRVMKG---ENCFPT----LKFFSNALDILVKLNDSTHTVQLWDIMVG-----IGFNLMPNLIMYNAVVGL 110 (274)
Q Consensus 43 ~~~~~a~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~l~~~ 110 (274)
|++++|+.++++..+ .-+.|+ ..+++.|..+|...|++++|+.++++.++ .|.+.+....+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 578888888877654 223333 35778888889999999999988888764 343334446678899999
Q ss_pred HHhcCChhhHHHHHHHHHh
Q 048737 111 LCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~ 129 (274)
|...|++++|+.++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999888754
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.56 E-value=0.0013 Score=53.49 Aligned_cols=93 Identities=4% Similarity=-0.025 Sum_probs=52.3
Q ss_pred HHHHHhCCChhhHHHHHHHHHhc-----CCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-----C-CCCC-hhh
Q 048737 71 LDILVKLNDSTHTVQLWDIMVGI-----GFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH-----G-AFPD-SLT 138 (274)
Q Consensus 71 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~ 138 (274)
+..+.+.|++++|+.++++..+. |.+.+....+++.+..+|...|++++|+.++++.++. | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33344556666666666666542 1111122455666666666667777766666655421 1 1222 345
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 139 YNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666777777777766666654
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.54 E-value=0.016 Score=44.02 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=66.0
Q ss_pred hhhHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhc-----CCHhHHHHHHHHHHhCCCCC--CcchHHHHHHHHHhc-C
Q 048737 117 VDNVFRFFDQMVFHGAFPD---SLTYNMIFECLIKN-----KKVHEVENFFHEMIKNEWQP--TPLNCATAITMLLDA-D 185 (274)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-~ 185 (274)
...|...+++..+. .|+ ...|..+...|... |+.++|.+.|++.++. .| +..++....+.++.. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 45667777777764 455 55788888888884 8888888888888874 45 366777777777774 8
Q ss_pred ChHHHHHHHHHHHHCCCC--ccHHHHHHH
Q 048737 186 EPEFAIEIWNYILENGIL--PLEASANVL 212 (274)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~--~~~~~~~~l 212 (274)
+.+.+.+.+++....... |+....+.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 888888888888886655 554444433
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.47 E-value=0.001 Score=58.64 Aligned_cols=46 Identities=2% Similarity=0.031 Sum_probs=25.9
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 048737 111 LCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
....|+++.|.++.+.+ .+...|..+...+.+.++++.|++.|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34456666666554332 24556666666666666666666666554
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.45 E-value=0.0018 Score=52.71 Aligned_cols=92 Identities=8% Similarity=0.017 Sum_probs=71.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcC---CCCC----hhhHHHHHHHHHhcCCHhHHHHHHHHHHhC-----C-CCCC-cch
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHG---AFPD----SLTYNMIFECLIKNKKVHEVENFFHEMIKN-----E-WQPT-PLN 173 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~ 173 (274)
+.-+.+.|++++|+.++++.++.. ..|+ ..+++.+...|...|++++|+.++++.+.. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444667789999999999887531 2233 467899999999999999999999987642 2 1232 357
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 048737 174 CATAITMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (274)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999988764
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.43 E-value=0.0027 Score=39.45 Aligned_cols=65 Identities=11% Similarity=-0.033 Sum_probs=28.5
Q ss_pred hHhHHHHHHHHHhccCc---HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhc
Q 048737 28 HVLAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGI 93 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 93 (274)
++..+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444444444432222 344445554444432 223344444444444445555555555544443
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.40 E-value=0.00052 Score=42.97 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=25.1
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCccCccHH-hHHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 73 ILVKLNDSTHTVQLWDIMVGIGFNLMPNLI-MYNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
.+...|++++|...|+++.+.. +.+.. .+..+..+|...|++++|...|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE---PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC---SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444555555555444432 22333 444444445555555555555554444
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.35 E-value=0.00095 Score=41.74 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=32.4
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHh-HHHHHHHHHhccCcHHHHHHHHHHHhcC
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVL-AYETFLITLIRGKQVDEALKFLRVMKGE 58 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~ 58 (274)
.+.|++++|++.|++..+. .|.+.. .|..+..++...|++++|++.|++..+.
T Consensus 11 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3456666666666666554 555555 6666666666666666666666666553
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.33 E-value=0.006 Score=37.86 Aligned_cols=66 Identities=8% Similarity=-0.026 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHhCCC---hhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 62 PTLKFFSNALDILVKLND---STHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 62 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
.++..+..+..++...++ .++|..++++..+.. +.+......+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555555543333 456666666666654 444555555556666666666666666666554
No 221
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.25 E-value=0.0056 Score=41.23 Aligned_cols=105 Identities=8% Similarity=0.025 Sum_probs=60.3
Q ss_pred CCchHhHHHHHHHHHhccCcH------HHHHHHHHHHhcCCCCCCHH-HHHHHHH------HHHhCCChhhHHHHHHHHH
Q 048737 25 NPEHVLAYETFLITLIRGKQV------DEALKFLRVMKGENCFPTLK-FFSNALD------ILVKLNDSTHTVQLWDIMV 91 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~ 91 (274)
.|.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .+..-+. .+...++++.|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 466777888888877777887 7777888877764 555421 0111110 1122356666666666665
Q ss_pred hcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 048737 92 GIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAF 133 (274)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 133 (274)
+.. -.- .-+|-.....-.+.|+...|.+++.+....+.+
T Consensus 88 ~~h--KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 88 ANC--KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHC--TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHh--HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 543 111 555555555556666666666666666655444
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.23 E-value=0.0047 Score=42.00 Aligned_cols=81 Identities=6% Similarity=0.006 Sum_probs=49.3
Q ss_pred hhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcC---ChhhHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHhH
Q 048737 80 STHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNN---DVDNVFRFFDQMVFHGAFP--DSLTYNMIFECLIKNKKVHE 154 (274)
Q Consensus 80 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~ 154 (274)
+..+++-|.+..+.+ +++..+...+..++++.+ +.++++.+|+...+.. .| +...+-.+.-+|.+.|++++
T Consensus 14 l~~~~~~y~~e~~~~---~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHTT---CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence 344555555555555 456666666666777766 4556777777766653 13 23444455555667777777
Q ss_pred HHHHHHHHHh
Q 048737 155 VENFFHEMIK 164 (274)
Q Consensus 155 a~~~~~~~~~ 164 (274)
|.+.++.+++
T Consensus 90 A~~y~~~lL~ 99 (152)
T 1pc2_A 90 ALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777766
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.14 E-value=0.0088 Score=45.35 Aligned_cols=96 Identities=9% Similarity=0.062 Sum_probs=61.0
Q ss_pred ccCcHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhC-----CChhhHHHHHHHHHhcCCccCc--cHHhHHHHHHH
Q 048737 41 RGKQVDEALKFLRVMKGENCFPT---LKFFSNALDILVKL-----NDSTHTVQLWDIMVGIGFNLMP--NLIMYNAVVGL 110 (274)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 110 (274)
..+....|...+++..+. .|+ ...|..+...|... |+.++|++.|++.++.+ | +..++......
T Consensus 175 Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln----P~~~id~~v~YA~~ 248 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC----SAHDPDHHITYADA 248 (301)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC----CTTCSHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC----CCCCchHHHHHHHH
Confidence 334556666777776663 344 45666777777663 77777777777777754 4 25666666676
Q ss_pred HHhc-CChhhHHHHHHHHHhcCCC--CChhhHHHH
Q 048737 111 LCNN-NDVDNVFRFFDQMVFHGAF--PDSLTYNMI 142 (274)
Q Consensus 111 ~~~~-~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 142 (274)
+++. |+.+.+.+.+++....... |+....+.+
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 7663 7777777777777776554 554444443
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.09 E-value=0.014 Score=51.42 Aligned_cols=129 Identities=10% Similarity=0.013 Sum_probs=86.6
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHH
Q 048737 33 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLC 112 (274)
Q Consensus 33 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (274)
..++..+.+.|.+++|+++.+ ++ ..-.......|+++.|.++.+. ..+...|..+...+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~A~~~~~~--------~~~~~~W~~la~~al 692 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTLARDLLTD--------ESAEMKWRALGDASL 692 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHHHHHHHTT--------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHHHHHHHHh--------hCcHhHHHHHHHHHH
Confidence 667777777777777776552 11 1123445677888888887532 246789999999999
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHH
Q 048737 113 NNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIE 192 (274)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 192 (274)
+.++++.|.+.|.++.+ |..+...|...|+.+...++-+.....| -++....+|.+.|++++|.+
T Consensus 693 ~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~ 757 (814)
T 3mkq_A 693 QRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKD 757 (814)
T ss_dssp HTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHH
Confidence 99999999999998754 4455566666787777666655555443 23444445555666666666
Q ss_pred HHHH
Q 048737 193 IWNY 196 (274)
Q Consensus 193 ~~~~ 196 (274)
++.+
T Consensus 758 ~~~~ 761 (814)
T 3mkq_A 758 LLIK 761 (814)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.042 Score=38.35 Aligned_cols=98 Identities=9% Similarity=0.136 Sum_probs=49.4
Q ss_pred HhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChh
Q 048737 39 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVD 118 (274)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (274)
..+.|+++.|.++.+.+ -+...|..|.......|+++-|++.|.+... +..+.-.|.-.|+.+
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------HHHHHHHHHHHTCHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------HHHHHHHHHHhCCHH
Confidence 34556666666665544 2455566666666666666666666655432 222333344445554
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 048737 119 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFF 159 (274)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 159 (274)
+-.++-+.....| -++.....+...|+++++.++|
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 4444433333222 2444444555556666665555
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.96 E-value=0.0073 Score=38.29 Aligned_cols=66 Identities=3% Similarity=-0.074 Sum_probs=43.6
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcC
Q 048737 29 VLAYETFLITLIRGKQVDEALKFLRVMKGEN------CFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIG 94 (274)
Q Consensus 29 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 94 (274)
+.-+..|...+.+.++++.|...|+...+.- -.+....+..|..++.+.|+++.|...++++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3445567777778888888888877765521 12345566667777777777777777777776643
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.95 E-value=0.012 Score=39.96 Aligned_cols=84 Identities=8% Similarity=0.072 Sum_probs=51.6
Q ss_pred cchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccC---cHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhCCCh
Q 048737 6 GNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK---QVDEALKFLRVMKGENCFP--TLKFFSNALDILVKLNDS 80 (274)
Q Consensus 6 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ 80 (274)
..+..+++-|.+.... + |.+..+...+.-++++.+ +.++++.+|++..+.+ .| +...+-.|.-++.+.|++
T Consensus 12 ~~l~~~~~~y~~e~~~-~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHcc-C--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCH
Confidence 3455666666655543 2 225566666777777766 5557777777776643 23 234445555566777777
Q ss_pred hhHHHHHHHHHhc
Q 048737 81 THTVQLWDIMVGI 93 (274)
Q Consensus 81 ~~a~~~~~~~~~~ 93 (274)
++|.+.++.+.+.
T Consensus 88 ~~A~~y~~~lL~i 100 (152)
T 1pc2_A 88 EKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777764
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.92 E-value=0.022 Score=38.41 Aligned_cols=107 Identities=14% Similarity=0.122 Sum_probs=62.2
Q ss_pred CccHHhHHHHHHHHHhcCCh------hhHHHHHHHHHhcCCCCChh-hHHHHHH------HHHhcCCHhHHHHHHHHHHh
Q 048737 98 MPNLIMYNAVVGLLCNNNDV------DNVFRFFDQMVFHGAFPDSL-TYNMIFE------CLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~li~------~~~~~~~~~~a~~~~~~~~~ 164 (274)
+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|...+. .+...+++++|.++|..+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34556666666666666666 6666677666554 444421 1111110 11233677778888877766
Q ss_pred CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccH
Q 048737 165 NEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLE 206 (274)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 206 (274)
.+-.. ...|....+--.+.|++..|..++.+....+.+|..
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 42222 445555555556778888888888887777665543
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.88 E-value=0.01 Score=37.60 Aligned_cols=67 Identities=9% Similarity=-0.001 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCC----ccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 63 TLKFFSNALDILVKLNDSTHTVQLWDIMVGIGF----NLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 63 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
+..-+..|...+.+.++++.|...|+.+.+... .-.+...++..+..++.+.|+++.|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344455566666666666666666666654310 0023345556666666666666666666666555
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.067 Score=37.34 Aligned_cols=131 Identities=9% Similarity=0.126 Sum_probs=89.6
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 048737 70 ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 149 (274)
Q Consensus 70 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 149 (274)
-.......|+++.|.++.+.+ .+...|..|.+...+.|+++-|.+.|.+..+ +..+.-.|.-.
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l--------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~t 73 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL--------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVT 73 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHh--------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHh
Confidence 345566889999998887655 2567899999999999999999999988753 44555566777
Q ss_pred CCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHH
Q 048737 150 KKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFA 229 (274)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 229 (274)
|+.++..++-+.....| -++.....+...|+++++.++|.+ .|-.|... ......|..+.|.++.
T Consensus 74 g~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA~------~~A~t~g~~~~a~~~~ 138 (177)
T 3mkq_B 74 GDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPLAY------AVAKANGDEAAASAFL 138 (177)
T ss_dssp TCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHHHH------HHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHHHH------HHHHHcCcHHHHHHHH
Confidence 88877666665555544 345566667778999999888743 33322211 1122356677777777
Q ss_pred HHH
Q 048737 230 EEM 232 (274)
Q Consensus 230 ~~m 232 (274)
+++
T Consensus 139 ~~~ 141 (177)
T 3mkq_B 139 EQA 141 (177)
T ss_dssp HHT
T ss_pred HHh
Confidence 665
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.57 E-value=0.021 Score=37.44 Aligned_cols=83 Identities=7% Similarity=-0.001 Sum_probs=50.4
Q ss_pred CChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhh---HHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCH
Q 048737 78 NDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDN---VFRFFDQMVFHGAFP--DSLTYNMIFECLIKNKKV 152 (274)
Q Consensus 78 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~ 152 (274)
..+..+++-|......| .++..+-..+..++++..+... ++.+++.+.+.+ .| .....-.+.-++.+.|++
T Consensus 15 ~~l~~~~~~y~~e~~~~---~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 34455556666555555 4666666666667777666555 667777766653 12 233334455566777777
Q ss_pred hHHHHHHHHHHh
Q 048737 153 HEVENFFHEMIK 164 (274)
Q Consensus 153 ~~a~~~~~~~~~ 164 (274)
++|.+.++.+++
T Consensus 91 ~~A~~~~~~lL~ 102 (126)
T 1nzn_A 91 EKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777766
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.64 E-value=0.27 Score=32.65 Aligned_cols=67 Identities=10% Similarity=0.003 Sum_probs=46.2
Q ss_pred cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 048737 100 NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEW 167 (274)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 167 (274)
+....+..++.....|+.+.-.+++..+... .+|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 4455666677777777777777777775332 456777777777777777777777777777777664
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.46 E-value=0.25 Score=32.29 Aligned_cols=65 Identities=6% Similarity=-0.044 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHhCCChhh---HHHHHHHHHhcCCccCc--cHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 62 PTLKFFSNALDILVKLNDSTH---TVQLWDIMVGIGFNLMP--NLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 62 ~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
|+..+--.+.-++++..+... +..+++.+.+.+ .| .....-.|.-++.+.|++++|.+.++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~---~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG---SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344443444444444443333 444444444432 12 122223333445555555555555555554
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.07 E-value=0.00012 Score=59.30 Aligned_cols=205 Identities=9% Similarity=0.037 Sum_probs=131.3
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
.+..|..|..+..+.+++.+|++-|- +. -|+..|..++....+.|.++.-.+++...++.. .++.+=+.|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~----ke~~IDteL 122 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETEL 122 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC----CSTTTTHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh----cccccHHHH
Confidence 45678888888888888888876662 21 256667888888888888888888887776643 444566788
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHh-------------------C-CC
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK-------------------N-EW 167 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------------------~-~~ 167 (274)
+-+|++.++..+-.+++ -.||..-...+..-|...|.++.|.-+|..+.. . .-
T Consensus 123 i~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888876644433 135666666667777777777666655543311 1 11
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHH
Q 048737 168 QPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKL 247 (274)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 247 (274)
..++.||-.+-.+|...+.+.-|.-.--.+.-. ..-...++..|-..|.+++.+.+++.-... -.....+|+-|
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL 269 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 269 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence 346678888888888888877665543333321 112233555667777777777777765532 13345566666
Q ss_pred HHHHHhcC
Q 048737 248 KKAFYNES 255 (274)
Q Consensus 248 ~~~~~~~g 255 (274)
.-.|++-.
T Consensus 270 aILYsKY~ 277 (624)
T 3lvg_A 270 AILYSKFK 277 (624)
T ss_dssp HHHHHSSC
T ss_pred HHHHHhcC
Confidence 66666544
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.25 Score=43.04 Aligned_cols=124 Identities=13% Similarity=0.188 Sum_probs=78.2
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHHhcCCCCCCHHHH--HHHHHHHHhCCC-hhhHHHHHHHHHhc------CCccCc-c-
Q 048737 33 ETFLITLIRGKQ-VDEALKFLRVMKGENCFPTLKFF--SNALDILVKLND-STHTVQLWDIMVGI------GFNLMP-N- 100 (274)
Q Consensus 33 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~~~-~- 100 (274)
..++..+...++ .+.|+.+|+++.... |...++ ..++..+...++ --+|.++..+.++. . .++ +
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~--l~~~~~ 327 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLND--LPPRDA 327 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHT--CSSCCH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh--hccccc
Confidence 345555556666 588999999998753 433332 233333333322 12344444444321 1 111 1
Q ss_pred ---------HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 048737 101 ---------LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECLIKNKKVHEVENFFHEM 162 (274)
Q Consensus 101 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (274)
....+.=.+.+...|+++.|+++-++.... .| +-.+|..|..+|...|+++.|+-.+..+
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112222344566789999999999998875 34 4789999999999999999999988876
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.66 Score=40.48 Aligned_cols=117 Identities=9% Similarity=0.134 Sum_probs=78.1
Q ss_pred cc-hHHHHHHHHHHHhccCCCCchHhHHH-HHHHHHhccC-cHHHHHHHHHHHhcC------CCCCC-HH----------
Q 048737 6 GN-VVEANKTFGEMVERFEWNPEHVLAYE-TFLITLIRGK-QVDEALKFLRVMKGE------NCFPT-LK---------- 65 (274)
Q Consensus 6 g~-~~~a~~~~~~~~~~~~~~p~~~~~~~-~li~~~~~~~-~~~~a~~~~~~~~~~------~~~~~-~~---------- 65 (274)
|+ ++.|..+|+++..+ .|.....+. .++..+.+.+ +--+|.+++.+..+. ..++. ..
T Consensus 262 ~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 262 PSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp GGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 44 57899999999887 663332222 3333333333 233566666555421 12221 11
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048737 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMV 128 (274)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (274)
.+..=...|...|+++.|+++-++..... |.+-.+|..|..+|...|+++.|+-.+..+.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11122345678899999999999999874 6678999999999999999999999998873
No 237
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.89 E-value=2.3 Score=39.34 Aligned_cols=190 Identities=12% Similarity=0.041 Sum_probs=113.8
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---------------
Q 048737 70 ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFP--------------- 134 (274)
Q Consensus 70 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------- 134 (274)
++..+...+..+.+..+... ++.+....-.+..+|...|++++|...|++... |+..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhh-------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 44455556666655543322 233444445667788899999999999977521 1111
Q ss_pred --------ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048737 135 --------DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTP----LNCATAITMLLDADEPEFAIEIWNYILENGI 202 (274)
Q Consensus 135 --------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 202 (274)
-..=|.-++..+.+.+.++.+.++-...++....-+. ..|..+.+.+...|++++|-..+..+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 0122566777888888888888888777654211111 2577888999999999999888887776544
Q ss_pred CccHHHHHHHHHHHHhcCCcc------------hHHHHHHHHHhC--CCccCHHHHHHHHHHHHhcChh---HHHHHHHH
Q 048737 203 LPLEASANVLLVGLRNLGRLS------------DVRRFAEEMLNR--RILIYDVTMQKLKKAFYNESRS---MRDRFDSL 265 (274)
Q Consensus 203 ~~~~~~~~~l~~~~~~~g~~~------------~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~---a~~~~~~~ 265 (274)
+ ......|+...+..|..+ +..+++..-.+. .+...+.-|..|-.-....|+. |.-+++++
T Consensus 970 r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 3 345666666666555443 333444332211 1111122345555555566666 77777777
Q ss_pred HHHh
Q 048737 266 ERRW 269 (274)
Q Consensus 266 ~~~~ 269 (274)
.+-.
T Consensus 1048 ~RL~ 1051 (1139)
T 4fhn_B 1048 SRYI 1051 (1139)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6644
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.88 E-value=0.17 Score=40.51 Aligned_cols=72 Identities=8% Similarity=0.048 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCCCCcchHH
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK-----NEWQPTPLNCA 175 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 175 (274)
+...++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34455666777777777777777766542 34667777777777777777777777776643 37777665533
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.88 E-value=0.5 Score=31.39 Aligned_cols=141 Identities=15% Similarity=0.055 Sum_probs=82.3
Q ss_pred HHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHh
Q 048737 74 LVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVH 153 (274)
Q Consensus 74 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 153 (274)
..-.|.+++..++..+..... +..-+|-++--....-+-+-..++++..-+ ..|.. ..|+..
T Consensus 17 ~ildG~v~qGveii~k~~~ss-----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis----------~C~NlK 78 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS-----TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLD----------KCQNLK 78 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGG----------GCSCTH
T ss_pred HHHhhhHHHHHHHHHHHcCCC-----CccccceeeeecchhhchhHHHHHHHHHhh---hcCcH----------hhhcHH
Confidence 344566777777776666543 233333333333333333344444443322 22221 223333
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 048737 154 EVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEML 233 (274)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 233 (274)
.....+-.+ ..+...+...++.....|.-+.-.+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+..
T Consensus 79 rVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 79 SVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 333333222 13445566677777888888888888888654 345777788888888888888888888888888
Q ss_pred hCCCc
Q 048737 234 NRRIL 238 (274)
Q Consensus 234 ~~~~~ 238 (274)
++|++
T Consensus 153 ~kG~k 157 (172)
T 1wy6_A 153 KKGEK 157 (172)
T ss_dssp HTTCH
T ss_pred HhhhH
Confidence 88865
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.84 E-value=1.8 Score=39.97 Aligned_cols=150 Identities=7% Similarity=-0.093 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHH
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD----SLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAI 178 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 178 (274)
-|..++..+.+.+.++.+.++-....+....-+ ...|..+...+...|++++|...+-.+.....+ ......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence 355555666666666666655554443211111 124556666666666666666666555443221 22334444
Q ss_pred HHHHhc------------CChHHHHHHHHHHHH-C-CCCccHHHHHHHHHHHHhcCCcchHHHH-HHHHHhCC----C--
Q 048737 179 TMLLDA------------DEPEFAIEIWNYILE-N-GILPLEASANVLLVGLRNLGRLSDVRRF-AEEMLNRR----I-- 237 (274)
Q Consensus 179 ~~~~~~------------~~~~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~~----~-- 237 (274)
...|.. |..+++.+++...-+ . .+...+.-|..|-.-+...|++.+|-.+ |+.+.+.+ .
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~~~~~~~~ 1058 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYISTTELIG 1058 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHhhhcccccc
Confidence 444433 334444454433221 1 1111112345455555777888877665 44433211 1
Q ss_pred ----ccCHHHHHHHHHHHHhc
Q 048737 238 ----LIYDVTMQKLKKAFYNE 254 (274)
Q Consensus 238 ----~~~~~~~~~l~~~~~~~ 254 (274)
..-...|..+|+++.-.
T Consensus 1059 ~~~~~~q~~~yL~~INaLslv 1079 (1139)
T 4fhn_B 1059 KKERTFIIEHYLIVLNTLELL 1079 (1139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred chhHHHHHHHHHHHHHHHhcC
Confidence 11235677777776643
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.73 E-value=1.4 Score=35.92 Aligned_cols=247 Identities=9% Similarity=-0.006 Sum_probs=141.2
Q ss_pred ccchHHHHHHHHHHHhccCC---CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHH----Hh
Q 048737 5 EGNVVEANKTFGEMVERFEW---NPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-ENCFPTLKFFSNALDIL----VK 76 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~----~~ 76 (274)
.|+++.|++.+..+.+.... .+........++..|...++|+...+.+..+.. +|..+ .....+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 47788888888776643111 122455677899999999999999888776654 34322 2233444333 23
Q ss_pred CCChhhHHH--HHHHHHh--cCCccCc---cHHhHHHHHHHHHhcCChhhHHHHHHHHHhc--CCCCC---hhhHHHHHH
Q 048737 77 LNDSTHTVQ--LWDIMVG--IGFNLMP---NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH--GAFPD---SLTYNMIFE 144 (274)
Q Consensus 77 ~~~~~~a~~--~~~~~~~--~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~ 144 (274)
....+...+ +.+.+.. .|. +-. .......|...|...|++.+|..++..+... |..+. ...+...++
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~k-iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENK-IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCC-CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 333332211 1111111 110 011 2334567889999999999999999987642 22111 356777888
Q ss_pred HHHhcCCHhHHHHHHHHHHh----CCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCccHHHH----HHHH
Q 048737 145 CLIKNKKVHEVENFFHEMIK----NEWQPT--PLNCATAITMLLDADEPEFAIEIWNYILEN-GILPLEASA----NVLL 213 (274)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~----~~l~ 213 (274)
.|...+++..|..++.+... ....|+ ...+...+..+...+++.+|-..|.+..+. ....+...+ ..++
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v 265 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIV 265 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 89999999999999988742 121222 134567778888889999988888777542 111121111 1122
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhc
Q 048737 214 VGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNE 254 (274)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 254 (274)
....-.+..+.-..++.........++...|..++.+|...
T Consensus 266 ~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~ 306 (445)
T 4b4t_P 266 YFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTN 306 (445)
T ss_dssp HHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhc
Confidence 22222333333333344333332335666777777777543
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.50 E-value=0.2 Score=40.12 Aligned_cols=70 Identities=10% Similarity=-0.120 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHh-----CCCccCHHHHH
Q 048737 175 ATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN-----RRILIYDVTMQ 245 (274)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~ 245 (274)
..++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 345667777888888888888777654 35677888888888888888888888888654 48888876533
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.94 E-value=0.65 Score=28.88 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=12.6
Q ss_pred cCccHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 048737 97 LMPNLIMYNAVVGLLCNNNDVDNVFRFFDQM 127 (274)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (274)
+.|++.+..+.+++|.|.+++..|.++|+-.
T Consensus 41 lVP~P~ii~aaLrAcRRvND~alAVR~lE~i 71 (109)
T 1v54_E 41 LVPEPKIIDAALRACRRLNDFASAVRILEVV 71 (109)
T ss_dssp BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.86 E-value=0.99 Score=29.73 Aligned_cols=67 Identities=6% Similarity=-0.042 Sum_probs=39.9
Q ss_pred CccHHhHHHHHHHHHhcCCh---hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 98 MPNLIMYNAVVGLLCNNNDV---DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
.|+..+--.+..++++..+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555555555566665543 45666676666554211244455555666777777777777777766
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.72 E-value=3.5 Score=33.64 Aligned_cols=191 Identities=13% Similarity=0.094 Sum_probs=120.5
Q ss_pred CcHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHh--HHHHHHHHHhcC
Q 048737 43 KQVDEALKFLRVMKG-----ENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIM--YNAVVGLLCNNN 115 (274)
Q Consensus 43 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 115 (274)
|+++.|++.+..+.+ .+..........++..|...++++.....+..+.+... ..+...+ .+.++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~-qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG-QLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT-TSHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCC
Confidence 678888887765543 23455677788899999999999998888777665431 2222221 122233222333
Q ss_pred ChhhH--HHHHHHHHh--cC-CCC---ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCC---cchHHHHHHHHH
Q 048737 116 DVDNV--FRFFDQMVF--HG-AFP---DSLTYNMIFECLIKNKKVHEVENFFHEMIKN--EWQPT---PLNCATAITMLL 182 (274)
Q Consensus 116 ~~~~a--~~~~~~~~~--~~-~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 182 (274)
..+.. ..+.+.... .| +.. .......|...|...|++.+|.+++..+... |.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 33321 222221111 01 111 1223456788899999999999999998643 22111 135667788999
Q ss_pred hcCChHHHHHHHHHHHH----CCCCcc--HHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 183 DADEPEFAIEIWNYILE----NGILPL--EASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 183 ~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
..+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|.+..+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999988753 222233 24567777888889999999988887754
No 246
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.71 E-value=2.1 Score=34.73 Aligned_cols=98 Identities=9% Similarity=-0.138 Sum_probs=70.2
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCcchHHHH-
Q 048737 102 IMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD--SLTYNMIFECLIKNKKVHEVENFFHEMIKN-EWQPTPLNCATA- 177 (274)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l- 177 (274)
.+...+...|.+.|+++.|.+.|.++...-..+. ...+-.+++.+...+++..+...+.+.... .-.++....+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3677889999999999999999999987533322 567788889999999999999999887543 112333332222
Q ss_pred ---HHHHHhcCChHHHHHHHHHHHH
Q 048737 178 ---ITMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 178 ---~~~~~~~~~~~~a~~~~~~~~~ 199 (274)
...+...+++..|-..|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 2223456889998888877654
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.68 E-value=1.1 Score=27.87 Aligned_cols=63 Identities=8% Similarity=0.048 Sum_probs=41.1
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHH
Q 048737 116 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAIT 179 (274)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 179 (274)
|.-+..+-++.+......|++......+++|.+.+++..|.++++..+.+- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 455666667777666777777777777777777777777777777665431 222344555543
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.55 E-value=1.5 Score=28.97 Aligned_cols=44 Identities=5% Similarity=0.038 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 048737 120 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMI 163 (274)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (274)
..+-++.+....+.|++......+++|.+.+|+..|.++|+-.+
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.44 E-value=0.51 Score=32.45 Aligned_cols=69 Identities=9% Similarity=0.045 Sum_probs=44.5
Q ss_pred CCCCchHhH--HHHHHHHHhccCcHHHHHHHHHHHhcC-CCCCC-------HHHHHHHHHHHHhCCChhhHHHHHHHHHh
Q 048737 23 EWNPEHVLA--YETFLITLIRGKQVDEALKFLRVMKGE-NCFPT-------LKFFSNALDILVKLNDSTHTVQLWDIMVG 92 (274)
Q Consensus 23 ~~~p~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 92 (274)
|..|+ ... +-.-+..+...+.++.|+-+.+.+... +..|+ ..++..+.+++...+++..|...|++.++
T Consensus 13 ~~~~~-~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 13 GLVPR-GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCC-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 55552 323 344567788899999999888876542 12233 13556677889999999999999999754
No 250
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.44 E-value=0.0057 Score=49.86 Aligned_cols=177 Identities=11% Similarity=0.035 Sum_probs=98.9
Q ss_pred CCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhH
Q 048737 25 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMY 104 (274)
Q Consensus 25 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (274)
+.+|+..|..+|.+..+.|.+++.++++.-.++.. -++..=+.|+-+|++.+++.+-++++ ..||..-.
T Consensus 79 kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl---------~~~N~A~i 147 (624)
T 3lvg_A 79 KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---------NGPNNAHI 147 (624)
T ss_dssp CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTT---------SCCSSSCT
T ss_pred hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHH---------cCCCcccH
Confidence 34477789999999999999999999887665543 23344467899999988876544333 13444444
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhc--------------------CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 105 NAVVGLLCNNNDVDNVFRFFDQMVFH--------------------GAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
..+.+-|...|.++.|.-+|..+..- .-.-++.||-.+-.+|...+.+.-|.-.--.++-
T Consensus 148 q~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv 227 (624)
T 3lvg_A 148 QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV 227 (624)
T ss_dssp HHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc
Confidence 45555555555555554444333110 0012566777777777777766655444333331
Q ss_pred CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 048737 165 NEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRN 218 (274)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (274)
.|| ....++..|-..|.+++-+.+++.-.... +.....|+-|.-.|++
T Consensus 228 ---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 228 ---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp ---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred ---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 111 22234444555555555555554443211 2334444444444443
No 251
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.16 E-value=6.4 Score=35.40 Aligned_cols=122 Identities=9% Similarity=0.059 Sum_probs=60.4
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhH--HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHH--HHHHHHHhc
Q 048737 109 GLLCNNNDVDNVFRFFDQMVFHGAFPDSLTY--NMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCA--TAITMLLDA 184 (274)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~ 184 (274)
..+...|+.+-...+++.+.+. .+.... ..+.-++...|+.+.+..+++.+.... .|....-. ++.-+|+..
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTS
T ss_pred hhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCC
Confidence 3344556666666666655542 122222 222233445677777777777666531 12221111 233345556
Q ss_pred CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 185 DEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
|+.....+++..+.+.. ..++.....+.-++...|+.+.+.+++..+.+.
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~ 623 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS 623 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc
Confidence 67666666776666532 233333333333444556666666666555443
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.05 E-value=0.3 Score=36.55 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=37.2
Q ss_pred ccccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhc
Q 048737 3 EKEGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 57 (274)
Q Consensus 3 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 57 (274)
.+.|++++|++....-.+. .|.|...-..|+..+|-.|+|++|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3567777777777666555 677777777777777777777777777766655
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.94 E-value=1.1 Score=33.62 Aligned_cols=117 Identities=9% Similarity=0.023 Sum_probs=66.4
Q ss_pred HHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCC
Q 048737 37 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNND 116 (274)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 116 (274)
..+.+.|++++|++....-++.. +.|...-..|+..+|-.|+++.|.+-++...+......|....|..+|.+=.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~---- 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ---- 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHH----
Confidence 34567778888887777776653 5566666777788888888888888777777754222233344554444311
Q ss_pred hhhHHHHHHHHHhcCCCC-----ChhhHHHHHHHHH--hcCCHhHHHHHHHHHHh
Q 048737 117 VDNVFRFFDQMVFHGAFP-----DSLTYNMIFECLI--KNKKVHEVENFFHEMIK 164 (274)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~ 164 (274)
.=.++...+-.| ...-...++.+.. ..|+.++|..+-..+.+
T Consensus 80 ------~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 80 ------ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ------HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 111222222122 1222334444433 35777777777776654
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.25 E-value=3.1 Score=33.74 Aligned_cols=100 Identities=8% Similarity=-0.006 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc---CCCCChhh--HH
Q 048737 66 FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH---GAFPDSLT--YN 140 (274)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~~ 140 (274)
+...+...+.+.|+++.|.+.|.++.........-...+-..++.+...+++..+...+.+.... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55678899999999999999999998754213344677888999999999999999999887542 22222211 11
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhC
Q 048737 141 MIFECLIKNKKVHEVENFFHEMIKN 165 (274)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~~~~~~~ 165 (274)
.-...+...+++..|...|-.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122234578899988888776553
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.93 E-value=2.4 Score=28.04 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048737 83 TVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMV 128 (274)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (274)
..+-++.+...+ +.|++.+....+++|.+.+|+..|.++|+-.+
T Consensus 72 lrrglN~l~~~D--lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYD--LVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSS--BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc--cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444433 44444444444555555555555555544443
No 256
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.57 E-value=9.4 Score=34.36 Aligned_cols=181 Identities=10% Similarity=0.003 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHH
Q 048737 46 DEALKFLRVMKGENCFPTLK--FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123 (274)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 123 (274)
+++.+.+..+....- +... .-..|...+.-.|+-+....++..+.+.. ..+..-.-.+.-++.-.|+.+.+..+
T Consensus 471 eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~l 546 (963)
T 4ady_A 471 IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDL 546 (963)
T ss_dssp HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHH
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHH
Confidence 456666666654321 1111 11233344556778788888888777542 23333344444556678999999999
Q ss_pred HHHHHhcCCCCChhhHH---HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048737 124 FDQMVFHGAFPDSLTYN---MIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN 200 (274)
Q Consensus 124 ~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (274)
.+.+... ..|. .-|. .+.-+|+..|+.....++++.+.+.. ..+......+.-++...|+.+.+.++++.+.+.
T Consensus 547 i~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~ 623 (963)
T 4ady_A 547 ITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS 623 (963)
T ss_dssp HHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC
T ss_pred HHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc
Confidence 9888764 1222 2232 34456778899888888999988742 222333333334455577777778887766654
Q ss_pred CCCccHHHHHHHHHHHHhcCCc-chHHHHHHHHHh
Q 048737 201 GILPLEASANVLLVGLRNLGRL-SDVRRFAEEMLN 234 (274)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 234 (274)
+ .|.+..-..+..+....|.. .++.+++..+..
T Consensus 624 ~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 624 H-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp S-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred C-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 4 46666666666666666664 577888888764
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.57 E-value=6.9 Score=31.29 Aligned_cols=166 Identities=8% Similarity=0.003 Sum_probs=106.3
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHHhcC-CCCC---CHHHHHHHHHHHHhC-CChhhHHHHHHHHHhcCCccCccHHhH
Q 048737 30 LAYETFLITLIRGKQVDEALKFLRVMKGE-NCFP---TLKFFSNALDILVKL-NDSTHTVQLWDIMVGIGFNLMPNLIMY 104 (274)
Q Consensus 30 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (274)
.+...|...|.+.|+.++..+++.....- +..| .......++..+... +..+.-.++..+.++.. ..+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a---~~~~r~f 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA---KQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH---HHTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH---HHHHHHH
Confidence 45667899999999999999998876542 1112 133456777777664 33444444444444432 1122233
Q ss_pred ------HHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCc
Q 048737 105 ------NAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD-----SLTYNMIFECLIKNKKVHEVENFFHEMIKN--EWQPTP 171 (274)
Q Consensus 105 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 171 (274)
..++..|...|++.+|.+++.++.+.=-..| ...|..-++.|...+++.++...+...... .+.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 2578889999999999999988876421212 345667778888999999999998877543 233444
Q ss_pred chHHHH----HHHHH-hcCChHHHHHHHHHHH
Q 048737 172 LNCATA----ITMLL-DADEPEFAIEIWNYIL 198 (274)
Q Consensus 172 ~~~~~l----~~~~~-~~~~~~~a~~~~~~~~ 198 (274)
.....+ ...+. ..+++..|...|-+..
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 333222 23345 7889999888776654
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.52 E-value=3.8 Score=26.97 Aligned_cols=68 Identities=13% Similarity=-0.048 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHhCCC---hhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 61 FPTLKFFSNALDILVKLND---STHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
.|++.+--.+.-++++..+ ...+..+++.+.+.+ .......+--|.-++.+.|++++|.+..+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3444444444444554443 345666666666654 1123444555556677777777777777777663
No 259
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=88.25 E-value=4.4 Score=27.42 Aligned_cols=62 Identities=13% Similarity=0.294 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC---cchHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCC
Q 048737 138 TYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT---PLNCATAITMLLDADE--PEFAIEIWNYILENGIL 203 (274)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 203 (274)
....++.-|...|+.++|...++++.. |. ..+...+..++-+.++ .+.+..++..+.+.++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~----p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV----PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 456777888888888888888887742 21 1122233333333222 34466666666666653
No 260
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.66 E-value=5.9 Score=28.19 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=35.9
Q ss_pred CCChhhHHHHHHHHHhcCCccCc-cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 048737 77 LNDSTHTVQLWDIMVGIGFNLMP-NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPD 135 (274)
Q Consensus 77 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 135 (274)
.+....+..+|..|...| +-. -...|-.....+...|++++|.++|+.-.+.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~--IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKG--IGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHT--SSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344556777777776665 322 344566666667777777777777777766666664
No 261
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=87.06 E-value=3 Score=30.16 Aligned_cols=186 Identities=7% Similarity=0.045 Sum_probs=90.5
Q ss_pred HHHHHhccCcHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHh--HHHHHHH
Q 048737 35 FLITLIRGKQVDEALKFLRVMKGENCFPTLK--FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIM--YNAVVGL 110 (274)
Q Consensus 35 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~l~~~ 110 (274)
.+...+..|+.+.+..+++.+.+.|..++.. .-.+.+...+..|+.+- ++.+.+.| ..++... -.+.+..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g--~~~~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAG--ASPMALDRHGQTAAHL 85 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTT--CCTTCCCTTSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcC--CCccccCCCCCCHHHH
Confidence 4556677788888888887766666544422 12234555556677654 44445555 3333211 1223344
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcch---HHHHHHHHHhc
Q 048737 111 LCNNNDVDNVFRFFDQMVFHGAFPD---SLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLN---CATAITMLLDA 184 (274)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~ 184 (274)
.+..|+.+-+..+++.....++.++ ....+.+.. .+..|+.+ +++.+.+.|..++... -.+.+...+..
T Consensus 86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 160 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV-AVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVEN 160 (241)
T ss_dssp HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHH-HHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHc
Confidence 4556666655555554332222222 222333333 34555544 4444555555444322 23445555667
Q ss_pred CChHHHHHHHHHHHHCCCCccH---HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccC
Q 048737 185 DEPEFAIEIWNYILENGILPLE---ASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240 (274)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 240 (274)
|+.+-+..++ +.|..++. ...+ .+...+..|+.+ +++.+.+.|..|+
T Consensus 161 ~~~~~v~~Ll----~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 161 NSLSMVQLLL----QHGANVNAQMYSGSS-ALHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp TCHHHHHHHH----HTTCCTTCBCTTSCB-HHHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred CCHHHHHHHH----HcCCCCCCcCCCCCC-HHHHHHHcCCHH----HHHHHHhcCCCCC
Confidence 7766554444 44544432 1122 233334455544 4455555666554
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.98 E-value=5.7 Score=27.30 Aligned_cols=119 Identities=11% Similarity=0.010 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCCh-------hhHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCcch
Q 048737 104 YNAVVGLLCNNNDVDNVFRFFDQMVFHG-AFPDS-------LTYNMIFECLIKNKKVHEVENFFHEMIKN--EWQPTPLN 173 (274)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 173 (274)
+-.-+..+...+.++.|+-+.+.+.... ..|+. .++..+.+++...+++..|...|++.++. .+.-+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444556666777777777766644321 12331 24556667777777777777777775432 11101111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 048737 174 CATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 235 (274)
...+- .....+. .....++...---+..+|...|++++|+.+++.+..+
T Consensus 103 ~~~~~---~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 103 RPSTG---NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccccc---ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 11000 0000000 0011223344444667778888888888887766444
No 263
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=86.77 E-value=2.8 Score=31.57 Aligned_cols=209 Identities=11% Similarity=0.016 Sum_probs=99.9
Q ss_pred ccchHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHH
Q 048737 5 EGNVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTV 84 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (274)
..+..+..+++.. . ++...|..-++. +...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+.
T Consensus 9 ~~~~~~v~~lL~~---~-~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 9 TWKSKQLKSFLSS---K-DTFKADVHGHSA-SYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp GCCHHHHHHHHHS---T-TTTCCCTTSCCH-HHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHH
T ss_pred hcCHHHHHHHHHh---C-CCCccCCCCCCH-HHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 4444555554432 1 333334433443 344556777765555554 343332211123445556677776554
Q ss_pred HHHHHHHhcCCccCcc---HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh---hHHHHHHHHHhcCCHhHHHHH
Q 048737 85 QLWDIMVGIGFNLMPN---LIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSL---TYNMIFECLIKNKKVHEVENF 158 (274)
Q Consensus 85 ~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~ 158 (274)
.+ .+.| ..++ ..-++. +...+..|+.+-+..+++ .|..++.. .+.+.+...+..|+.+-
T Consensus 80 ~L----l~~g--a~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~---- 144 (285)
T 3kea_A 80 IL----LFSG--LDDSQFDDKGNTA-LYYAVDSGNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSI---- 144 (285)
T ss_dssp HH----HHTT--CCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHH----
T ss_pred HH----HHCC--CCCCCcCCCCCcH-HHHHHHcCCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHH----
Confidence 44 4445 3332 222233 334455666655444444 34444432 22344445556677653
Q ss_pred HHHHHhCCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 048737 159 FHEMIKNEWQPTPL-NCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRI 237 (274)
Q Consensus 159 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 237 (274)
.+.+.+.|..+... .-.+.+...+..|+.+-+..+++.-..-.. .+....+..+...+..|+ .++++.+.+.|.
T Consensus 145 v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~----~~~v~~Ll~~ga 219 (285)
T 3kea_A 145 VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKD----IEMLQALFKYDI 219 (285)
T ss_dssp HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTC----HHHHHHHTTSCB
T ss_pred HHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCC----HHHHHHHHHcCC
Confidence 44444554333222 344556666788888877777765443222 111112222222334454 345666677777
Q ss_pred ccCHH
Q 048737 238 LIYDV 242 (274)
Q Consensus 238 ~~~~~ 242 (274)
.|+..
T Consensus 220 d~~~~ 224 (285)
T 3kea_A 220 NIYSA 224 (285)
T ss_dssp CSTTT
T ss_pred CCCCC
Confidence 66654
No 264
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=86.63 E-value=5 Score=26.27 Aligned_cols=61 Identities=13% Similarity=0.284 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC---cchHHHHHHHHHhcCC--hHHHHHHHHHHHHCCC
Q 048737 138 TYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT---PLNCATAITMLLDADE--PEFAIEIWNYILENGI 202 (274)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 202 (274)
....++.-|...|+.++|...++++.. |. ......+..++-+.++ .+.+..++..+.+.|+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~----p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEV----PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC----CccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 345667777777777777777777641 21 1122223333333321 2445566666665554
No 265
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=86.26 E-value=4.6 Score=29.92 Aligned_cols=83 Identities=14% Similarity=0.020 Sum_probs=37.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCccHHH--HHHHHHHHHhcCCcchHHHHHHHHHh-CCCccCHHH--HHHHHHHHHhcC
Q 048737 181 LLDADEPEFAIEIWNYILENGILPLEAS--ANVLLVGLRNLGRLSDVRRFAEEMLN-RRILIYDVT--MQKLKKAFYNES 255 (274)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~--~~~l~~~~~~~g 255 (274)
.+..++.....++.+.+.+.|..++... -.+.+...+..|+.+- ++.+.+ .|..++... -.+-+...++.|
T Consensus 189 a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~ 264 (285)
T 1wdy_A 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL----VQRLLEQEHIEINDTDSDGKTALLLAVELK 264 (285)
T ss_dssp HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHH----HHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH----HHHHHhccCCCccccCCCCCcHHHHHHHcC
Confidence 3445555555566666666665554321 1123333445555443 333443 444433211 112233334445
Q ss_pred hhHHHHHHHHHHHh
Q 048737 256 RSMRDRFDSLERRW 269 (274)
Q Consensus 256 ~~a~~~~~~~~~~~ 269 (274)
.. ++.+.+++.+
T Consensus 265 ~~--~i~~~Ll~~G 276 (285)
T 1wdy_A 265 LK--KIAELLCKRG 276 (285)
T ss_dssp CH--HHHHHHHHHS
T ss_pred cH--HHHHHHHHcC
Confidence 55 5555555554
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.07 E-value=10 Score=29.44 Aligned_cols=141 Identities=11% Similarity=-0.017 Sum_probs=64.4
Q ss_pred HHhcCChhhHHHH----HHHHHhcCCCCChhhHHHHHHHHHhcCCHh-HHHHHHHHHHh----CC--CCCCcchHHHHHH
Q 048737 111 LCNNNDVDNVFRF----FDQMVFHGAFPDSLTYNMIFECLIKNKKVH-EVENFFHEMIK----NE--WQPTPLNCATAIT 179 (274)
Q Consensus 111 ~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~ 179 (274)
+.+.|+...|..+ ++-..+.++++|......++..+.....-+ .-.++++++++ .| ..-|+.....+..
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 3444554443333 344455566666666666666655443211 12233333321 11 1223445555666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChh-H
Q 048737 180 MLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRS-M 258 (274)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~-a 258 (274)
.|.+.+++.+|+.-|- .|-.++...+..++.-+...+.. ..++...-..++.-++-..-. |
T Consensus 145 ~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~--------------~e~dlfiaRaVL~yL~l~n~~~A 206 (336)
T 3lpz_A 145 LYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDES--------------HTAPLYCARAVLPYLLVANVRAA 206 (336)
T ss_dssp HHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCG--------------GGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCC--------------ccHHHHHHHHHHHHHHhCCHHHH
Confidence 6666666666665441 23333334444444333333221 122333344444444433333 7
Q ss_pred HHHHHHHHHHh
Q 048737 259 RDRFDSLERRW 269 (274)
Q Consensus 259 ~~~~~~~~~~~ 269 (274)
..+++...+..
T Consensus 207 ~~~~~~f~~~l 217 (336)
T 3lpz_A 207 NTAYRIFTSAL 217 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77766666543
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.52 E-value=7.9 Score=27.55 Aligned_cols=55 Identities=20% Similarity=0.185 Sum_probs=35.7
Q ss_pred CChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 048737 115 NDVDNVFRFFDQMVFHGAFPD-SLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQP 169 (274)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 169 (274)
+...++..+|..|...|+--. +..|......+...|++.+|.++|..-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335577777777776665433 4456666666777777777777777777665555
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.47 E-value=14 Score=29.52 Aligned_cols=227 Identities=6% Similarity=-0.066 Sum_probs=123.1
Q ss_pred cccccchHHHHHHHHHHHhccCCCCc--hHhHHHHHHHHHhcc-CcHHHHHHHHHHHhcCCCCCCHHHH------HHHHH
Q 048737 2 WEKEGNVVEANKTFGEMVERFEWNPE--HVLAYETFLITLIRG-KQVDEALKFLRVMKGENCFPTLKFF------SNALD 72 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~ 72 (274)
|.+.|+.++..+++.....-++.-|. ....-..++..+... +..+.-.++..+..+... -+..+| ..++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~l~~kL~~ 107 (394)
T 3txn_A 29 YKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQSLEARLIA 107 (394)
T ss_dssp HHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 45677788888777766543232231 233345667676554 334444444444433110 011122 36788
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCcc---CccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc--CCCCChhhHH--H--HH
Q 048737 73 ILVKLNDSTHTVQLWDIMVGIGFNL---MPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH--GAFPDSLTYN--M--IF 143 (274)
Q Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~--~--li 143 (274)
.|...|++.+|.+++.++.+.-... ..-..++-.-+..|...++..++...+...... .+.+++..-. - -.
T Consensus 108 l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~G 187 (394)
T 3txn_A 108 LYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSG 187 (394)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhh
Confidence 9999999999999998888642001 112455777778899999999999999877543 1323332222 1 12
Q ss_pred HHHH-hcCCHhHHHHHHHHHHhC-C-C-CCC---cchHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCccHHHHHHHHHH
Q 048737 144 ECLI-KNKKVHEVENFFHEMIKN-E-W-QPT---PLNCATAITMLLDADEPEFAIEIWN-YILENGILPLEASANVLLVG 215 (274)
Q Consensus 144 ~~~~-~~~~~~~a~~~~~~~~~~-~-~-~~~---~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~ 215 (274)
..+. ..+++..|...|-+..+. . . .|. ...|..|... -.++..+...++. .....-..|....+..++.+
T Consensus 188 i~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL--l~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a 265 (394)
T 3txn_A 188 ILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI--MLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEA 265 (394)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH--HcCCHHHHHHHhccccccccCCccHHHHHHHHHH
Confidence 2345 688999988877665422 1 0 111 1123222222 2233333323222 21111134666666777776
Q ss_pred HHhcCCcchHHHHHHHH
Q 048737 216 LRNLGRLSDVRRFAEEM 232 (274)
Q Consensus 216 ~~~~g~~~~a~~~~~~m 232 (274)
| ..+++.+...+++..
T Consensus 266 ~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 266 S-HKRSLADFQAALKEY 281 (394)
T ss_dssp H-HTTCHHHHHHHHHHS
T ss_pred H-HhCCHHHHHHHHHHH
Confidence 5 456676666666654
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=84.42 E-value=2.6 Score=28.52 Aligned_cols=53 Identities=8% Similarity=0.012 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHH
Q 048737 48 ALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLI 102 (274)
Q Consensus 48 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 102 (274)
+.++|..|...|+... ...|......+-..|++.+|..+|+.-++.+ -.|-..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~--A~P~~r 137 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ--AEPREF 137 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBSHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CccHHH
Confidence 7899999999887654 5667788888889999999999999999988 677644
No 270
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=84.31 E-value=6.3 Score=28.39 Aligned_cols=16 Identities=13% Similarity=0.300 Sum_probs=7.1
Q ss_pred ccchHHHHHHHHHHHh
Q 048737 5 EGNVVEANKTFGEMVE 20 (274)
Q Consensus 5 ~g~~~~a~~~~~~~~~ 20 (274)
.|+.+....+++.+.+
T Consensus 19 ~g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 19 QGNLPAVHRLVNLFQQ 34 (241)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 3444444444444433
No 271
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=84.06 E-value=14 Score=29.11 Aligned_cols=97 Identities=6% Similarity=0.024 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC--cchHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 048737 174 CATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGR--LSDVRRFAEEMLNRRILIYDVTMQKLKKAF 251 (274)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 251 (274)
...++.=|...|+.++|.+.++++..-.+ -...+...+..++-+.++ .+.+..++..+.+.|+-+.......+...+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 56788889999999999999988864222 123445555566655433 456888888888888877666666666666
Q ss_pred HhcChh------HHHHHHHHHHHhhh
Q 048737 252 YNESRS------MRDRFDSLERRWKT 271 (274)
Q Consensus 252 ~~~g~~------a~~~~~~~~~~~~~ 271 (274)
....+. |..++.+++.+...
T Consensus 299 ~~ldDl~lDiP~A~~~la~~varai~ 324 (358)
T 3eiq_C 299 NEIPDINLDVPHSYSVLERFVEECFQ 324 (358)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HhccHhhcccccHHHHHHHHHHHHHH
Confidence 655544 77777777766543
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=83.49 E-value=3.2 Score=28.51 Aligned_cols=55 Identities=7% Similarity=0.048 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHh
Q 048737 47 EALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIM 103 (274)
Q Consensus 47 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 103 (274)
.+.++|..|...|+... ...|......+-..|++..|..+|+.-++.+ -.|-...
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~--A~P~~~L 133 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK--AEPLERL 133 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBSHHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHH
Confidence 36788999998887654 5667778888889999999999999999988 7776543
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.86 E-value=6.5 Score=24.41 Aligned_cols=8 Identities=0% Similarity=0.152 Sum_probs=3.0
Q ss_pred cCChhhHH
Q 048737 114 NNDVDNVF 121 (274)
Q Consensus 114 ~~~~~~a~ 121 (274)
.|++++|.
T Consensus 52 rG~Yq~Al 59 (115)
T 2uwj_G 52 QGRYQEAL 59 (115)
T ss_dssp TTCHHHHH
T ss_pred chhHHHHH
Confidence 33333333
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.82 E-value=7.2 Score=24.24 Aligned_cols=11 Identities=18% Similarity=0.296 Sum_probs=4.2
Q ss_pred hcCChhhHHHH
Q 048737 113 NNNDVDNVFRF 123 (274)
Q Consensus 113 ~~~~~~~a~~~ 123 (274)
..|++++|..+
T Consensus 52 NrG~Yq~Al~l 62 (116)
T 2p58_C 52 NRGDYASALQQ 62 (116)
T ss_dssp HTTCHHHHHHH
T ss_pred cchhHHHHHHh
Confidence 33334433333
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.54 E-value=7.4 Score=24.16 Aligned_cols=49 Identities=10% Similarity=-0.087 Sum_probs=21.2
Q ss_pred HHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 74 LVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 74 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
+.+.|++++|..+.+.. ..||...|-.|.. .+.|..+++..-+.++..+
T Consensus 49 LmNrG~Yq~Al~l~~~~------c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN------PWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTC------CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCC------CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 34445555544433322 2344444444332 3344444444444444444
No 276
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=81.53 E-value=16 Score=28.04 Aligned_cols=97 Identities=6% Similarity=0.026 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC--cchHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 048737 174 CATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGR--LSDVRRFAEEMLNRRILIYDVTMQKLKKAF 251 (274)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 251 (274)
...++.-|...|+.++|.+.++++..-.. -...+...+..++-+.++ .+.+..++..+.+.|+-+.......+-..+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f-~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGG-HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 55788888889999999999988853211 112344445555544433 456778888888888776665555555555
Q ss_pred HhcChh------HHHHHHHHHHHhhh
Q 048737 252 YNESRS------MRDRFDSLERRWKT 271 (274)
Q Consensus 252 ~~~g~~------a~~~~~~~~~~~~~ 271 (274)
....+. |..++..++.+...
T Consensus 248 ~~l~Dl~lDiP~A~~~la~~v~~ai~ 273 (307)
T 2zu6_B 248 NEIPDINLDVPHSYSVLERFVEECFQ 273 (307)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HhccHhhcccccHHHHHHHHHHHHHH
Confidence 554443 77777777766543
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.68 E-value=8 Score=24.04 Aligned_cols=78 Identities=12% Similarity=-0.012 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHH
Q 048737 44 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123 (274)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 123 (274)
..++|..+-+.+...+. ....-.+-+..+.+.|++++|..+.+.. ..||...|-.|.. .+.|..+++..-
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~------c~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL------AYPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS------CCGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC------CCchHHHHHHHHH--HhcccHHHHHHH
Confidence 34455555544444332 1111112223344555555555444333 2455555544433 344444555555
Q ss_pred HHHHHhcC
Q 048737 124 FDQMVFHG 131 (274)
Q Consensus 124 ~~~~~~~~ 131 (274)
+.++..+|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 54544443
No 278
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=79.79 E-value=2.5 Score=31.18 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=12.5
Q ss_pred HHHhCCChhhHHHHHHHHHhcC
Q 048737 73 ILVKLNDSTHTVQLWDIMVGIG 94 (274)
Q Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~ 94 (274)
..++.|+.+....+++.+.+.+
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC
Confidence 3345566666666666555544
No 279
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.73 E-value=11 Score=25.12 Aligned_cols=20 Identities=5% Similarity=0.084 Sum_probs=8.4
Q ss_pred HHHhcCCHhHHHHHHHHHHh
Q 048737 145 CLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~ 164 (274)
++.+.|++++|.++.+.+++
T Consensus 86 g~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 86 GCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 33444444444444444443
No 280
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=78.48 E-value=11 Score=26.81 Aligned_cols=179 Identities=10% Similarity=0.049 Sum_probs=78.3
Q ss_pred HHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCcc---HHhHHHHHHHHH
Q 048737 36 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPN---LIMYNAVVGLLC 112 (274)
Q Consensus 36 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 112 (274)
+...++.|+.+....++..-...-..++..-.+. +...+..|+.+-+. .+.+.| ..++ ..-++.| ...+
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~----~Ll~~g--~~~~~~~~~g~t~L-~~A~ 81 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEIVE----FLLQLG--VPVNDKDDAGWSPL-HIAA 81 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHHHH----HHHHTT--CCSCCCCTTSCCHH-HHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHHHH----HHHHhC--CCCCCcCCCCCCHH-HHHH
Confidence 4455667788777777765322111122222222 33334556654443 344444 2222 2222233 3334
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcch--HHHHHHHHHhcCCh
Q 048737 113 NNNDVDNVFRFFDQMVFHGAFPDS---LTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLN--CATAITMLLDADEP 187 (274)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 187 (274)
..|+.+ +++.+.+.|..++. ...+.+ ...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.
T Consensus 82 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 152 (231)
T 3aji_A 82 SAGXDE----IVKALLVKGAHVNAVNQNGCTPL-HYAASKNRHEIA----VMLLEGGANPDAKDHYDATAMHRAAAKGNL 152 (231)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HcCHHH----HHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 445554 33444444544432 222233 333455665533 33444555444321 12334445566776
Q ss_pred HHHHHHHHHHHHCCCCccH---HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccC
Q 048737 188 EFAIEIWNYILENGILPLE---ASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIY 240 (274)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 240 (274)
+.+..++ +.|..++. ...+ .+...+..|+.+ +++.+.+.|..++
T Consensus 153 ~~v~~Ll----~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 153 KMVHILL----FYKASTNIQDTEGNT-PLHLACDEERVE----EAKFLVTQGASIY 199 (231)
T ss_dssp HHHHHHH----HTTCCSCCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCSC
T ss_pred HHHHHHH----hcCCCccccCCCCCC-HHHHHHHCCCHH----HHHHHHHCCCCCC
Confidence 6554444 34443332 1122 233334556543 4445555565543
No 281
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=77.91 E-value=3.9 Score=28.55 Aligned_cols=15 Identities=0% Similarity=-0.044 Sum_probs=7.7
Q ss_pred HHHHHHHHhCCCccC
Q 048737 226 RRFAEEMLNRRILIY 240 (274)
Q Consensus 226 ~~~~~~m~~~~~~~~ 240 (274)
.++++.+.+.|..|+
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 445555555554443
No 282
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.23 E-value=14 Score=24.72 Aligned_cols=67 Identities=12% Similarity=-0.084 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhCCCh---hhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 61 FPTLKFFSNALDILVKLNDS---THTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
.|+..+--.+.-++.+..+. ..+..+++.+.+.+ ........--|.-++.+.|++++|.+..+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555444445555555433 34555666665543 111233333444556666666666666666665
No 283
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=77.05 E-value=50 Score=31.16 Aligned_cols=79 Identities=8% Similarity=0.075 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 048737 117 VDNVFRFFDQMVFHGAFP-DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWN 195 (274)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (274)
.+.-.+.|.++.+- +.+ |.......+..-...+++..|++++.++.+.. |+...|..++..+...| |+......+
T Consensus 1265 ~~~~~~~~~el~k~-~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~-w~h~~~~~~ 1340 (1354)
T 3lxu_X 1265 LAEINELYTEIIKF-VDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG-HEHIRTVIN 1340 (1354)
T ss_dssp HHHHHHHHHHHTTS-SCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-cccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 44555666666654 232 33333333333346788888888888888753 67777877777766554 444444444
Q ss_pred HHHH
Q 048737 196 YILE 199 (274)
Q Consensus 196 ~~~~ 199 (274)
++.-
T Consensus 1341 ~~~~ 1344 (1354)
T 3lxu_X 1341 RMMI 1344 (1354)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 4443
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=75.45 E-value=16 Score=24.67 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 048737 120 VFRFFDQMVFHGAFPD-SLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQP 169 (274)
Q Consensus 120 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 169 (274)
+..+|..|...|+--. +..|......+...|++++|.++|..-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555555443322 3334444444555555555555555555443333
No 285
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=75.35 E-value=5.4 Score=28.91 Aligned_cols=55 Identities=9% Similarity=0.085 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHH
Q 048737 46 DEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLI 102 (274)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 102 (274)
+.+.++|..|...|+... ...|......+-..|++.+|..+|+.-++.+ -.|-..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~--A~P~~r 186 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK--AKPFLR 186 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CBSHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CccHHH
Confidence 467789999998887654 5667788888889999999999999999987 677644
No 286
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=74.46 E-value=16 Score=24.29 Aligned_cols=34 Identities=9% Similarity=-0.096 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 048737 222 LSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNES 255 (274)
Q Consensus 222 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 255 (274)
.-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4445555555544444444444444444444433
No 287
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=72.74 E-value=16 Score=25.25 Aligned_cols=155 Identities=12% Similarity=0.033 Sum_probs=62.6
Q ss_pred HHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccH---HhHHHHHHHHHhc
Q 048737 38 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNL---IMYNAVVGLLCNN 114 (274)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 114 (274)
..+..|+.+....++..-...--..+..-.+. +...+..|+.+- ++.+.+.| ..++. ...+. +...+..
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~g--~~~~~~~~~g~t~-l~~A~~~ 82 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIEI----AKALIDRG--ADINLQNSISDSP-YLYAGAQ 82 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHHH----HHHHHHTT--CCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHHH----HHHHHHcC--CCCCCCCCCCCCH-HHHHHHc
Confidence 34556777666666643220000112222223 333345566543 44444445 33321 12222 3334455
Q ss_pred CChhhHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC-hHHH
Q 048737 115 NDVDNVFRFFDQMVFHGAFP---DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADE-PEFA 190 (274)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 190 (274)
|+.+-+..+++.- +..+ +....+.+ ...+..|+.+-+..+++.-...--..|..-.+.|..++ ..++ ...-
T Consensus 83 ~~~~~~~~Ll~~~---~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~~~~~~~~ 157 (201)
T 3hra_A 83 GRTEILAYMLKHA---TPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV-GLREGNQLY 157 (201)
T ss_dssp TCHHHHHHHHHHS---CCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH-HSSCCSHHH
T ss_pred CCHHHHHHHHhcc---CcccccccCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH-HhccchhhH
Confidence 6665555544332 2112 12122222 33345566654444443320000012222233343333 3343 3333
Q ss_pred HHHHHHHHHCCCCcc
Q 048737 191 IEIWNYILENGILPL 205 (274)
Q Consensus 191 ~~~~~~~~~~~~~~~ 205 (274)
.++.+.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 556666666665554
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.70 E-value=20 Score=26.33 Aligned_cols=208 Identities=14% Similarity=0.048 Sum_probs=107.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHHhcCCCCCCHH---HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccH---HhHHHH
Q 048737 34 TFLITLIRGKQVDEALKFLRVMKGENCFPTLK---FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNL---IMYNAV 107 (274)
Q Consensus 34 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~l 107 (274)
+.+...++.|+.+.+..++ +.|..++.. .-.+.+...+..|+.+-+ +.+.+.| ..++. .-.+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g--~~~~~~~~~g~t~- 75 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHG--ADPVLRKKNGATP- 75 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTT--CCTTCCCTTCCCH-
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHH----HHHHHcC--CCCcccCCCCCCH-
Confidence 3555667788886555555 444333311 112345555677776544 4445555 33332 22223
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcch-----------
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFPDS---LTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLN----------- 173 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------- 173 (274)
+...+..|+.+ +++.+.+.|..++. ..++.+. ..+..|+.+ +++.+.+.|..++...
T Consensus 76 L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~ 146 (285)
T 1wdy_A 76 FLLAAIAGSVK----LLKLFLSKGADVNECDFYGFTAFM-EAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRK 146 (285)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTC
T ss_pred HHHHHHcCCHH----HHHHHHHcCCCCCccCcccCCHHH-HHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhcc
Confidence 33344556654 44455556655543 2233343 345666654 4455555665554321
Q ss_pred -HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcc---HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHH--HHHH
Q 048737 174 -CATAITMLLDADEPEFAIEIWNYILENGILPL---EASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVT--MQKL 247 (274)
Q Consensus 174 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~l 247 (274)
-.+.+...+..|+.+.+..+++. .|..++ ....+.+ ...+..|......++++.+.+.|..++... -.+.
T Consensus 147 ~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~ 222 (285)
T 1wdy_A 147 GGATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP 222 (285)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcH
Confidence 11345555667777655554432 143333 2223333 334556777777788888888887665432 2234
Q ss_pred HHHHHhcChhHHHHHHHHHH
Q 048737 248 KKAFYNESRSMRDRFDSLER 267 (274)
Q Consensus 248 ~~~~~~~g~~a~~~~~~~~~ 267 (274)
+...+..|.. ++.+.+++
T Consensus 223 L~~A~~~~~~--~~v~~Ll~ 240 (285)
T 1wdy_A 223 LILAVEKKHL--GLVQRLLE 240 (285)
T ss_dssp HHHHHHTTCH--HHHHHHHH
T ss_pred HHHHHHcCCH--HHHHHHHh
Confidence 4555566666 55555554
No 289
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=72.56 E-value=19 Score=24.15 Aligned_cols=44 Identities=7% Similarity=0.023 Sum_probs=21.6
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 048737 212 LLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNES 255 (274)
Q Consensus 212 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 255 (274)
++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33344444445555555555555444444545444445554444
No 290
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=72.54 E-value=8.5 Score=28.12 Aligned_cols=23 Identities=9% Similarity=-0.107 Sum_probs=13.1
Q ss_pred HHHHhCCChhhHHHHHHHHHhcC
Q 048737 72 DILVKLNDSTHTVQLWDIMVGIG 94 (274)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~ 94 (274)
...+..|+.+.+..+++.+.+.|
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g 29 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNS 29 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 33445566666666666555555
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.33 E-value=21 Score=24.51 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 048737 120 VFRFFDQMVFHGAFPD-SLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQP 169 (274)
Q Consensus 120 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 169 (274)
+..+|..|...|+--. +..|......+...|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4455555555544322 3344444455555555555555555555544444
No 292
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=71.90 E-value=19 Score=23.93 Aligned_cols=43 Identities=12% Similarity=-0.033 Sum_probs=21.1
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 048737 213 LVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNES 255 (274)
Q Consensus 213 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 255 (274)
+..+...+..-.|.++++.+.+.+...+..|..-.++.+...|
T Consensus 28 l~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3333344444555555555555544444555444445554444
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=71.81 E-value=13 Score=26.50 Aligned_cols=203 Identities=7% Similarity=-0.055 Sum_probs=94.1
Q ss_pred HHhccCcHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccH---HhHHHHHHHHH
Q 048737 38 TLIRGKQVDEALKFLRVMKGENCFPTLK--FFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNL---IMYNAVVGLLC 112 (274)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 112 (274)
..++.|+.+.+..++ +.|..++.. .-.+.+...+..|+.+-+.. +.+.| ..++. ..-.+.+...+
T Consensus 15 ~A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~~--~~~~~~~~~~~~t~L~~A~ 84 (240)
T 3eu9_A 15 KATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVKY----YISKG--AIVDQLGGDLNSTPLHWAT 84 (240)
T ss_dssp HHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH----HHHTT--CCTTCCBTTTTBCHHHHHH
T ss_pred HHHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHH----HHHcC--CcchhhcCCcCCChhHHHH
Confidence 456778876555544 445444321 12345666677788755544 44444 22221 11123344445
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcc---hHHHHHHHHHhcCC
Q 048737 113 NNNDVDNVFRFFDQMVFHGAFPDS---LTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPL---NCATAITMLLDADE 186 (274)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 186 (274)
..|+.+- ++.+.+.|..++. ...+. +...+..|+.+ +++.+.+.|..++.. -.+.+..++...+.
T Consensus 85 ~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~ 155 (240)
T 3eu9_A 85 RQGHLSM----VVQLMKYGADPSLIDGEGCSC-IHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHS 155 (240)
T ss_dssp HHTCHHH----HHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred HcCCHHH----HHHHHHcCCCCcccCCCCCCH-HHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCCh
Confidence 5566554 4444455555543 22233 33445567665 444455555555432 23444444434333
Q ss_pred hHHHHHHHHHHHHCCCCccHHH---HHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHH--HHHHHHHHHhcChhHHHH
Q 048737 187 PEFAIEIWNYILENGILPLEAS---ANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVT--MQKLKKAFYNESRSMRDR 261 (274)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~g~~a~~~ 261 (274)
.+ ..+ .+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++... -.+-+....+.|+. ++
T Consensus 156 ~~-~~~---~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~--~~ 225 (240)
T 3eu9_A 156 VD-PTR---LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVI----SLLLEAGANVDAQNIKGESALDLAKQRKNV--WM 225 (240)
T ss_dssp ST-THH---HHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHH----HHHHHHTCCTTCBCTTSCBHHHHHHHTTCH--HH
T ss_pred HH-HHH---HHHhcCCCcchhhccCCCcHHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHcCcH--HH
Confidence 33 222 2334444443221 12344445566776544 44444455444211 11234455566666 55
Q ss_pred HHHHHHHh
Q 048737 262 FDSLERRW 269 (274)
Q Consensus 262 ~~~~~~~~ 269 (274)
.+.+++.+
T Consensus 226 v~~L~~~~ 233 (240)
T 3eu9_A 226 INHLQEAR 233 (240)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 55555544
No 294
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=71.10 E-value=19 Score=23.60 Aligned_cols=61 Identities=18% Similarity=0.143 Sum_probs=27.9
Q ss_pred HHhCCCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcc
Q 048737 162 MIKNEWQPTPLNCATAITMLLDAD-EPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLS 223 (274)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 223 (274)
+.+.|.+++..- ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 344454443322 23333444443 44456666666655544444444444445555555443
No 295
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=70.99 E-value=4.1 Score=29.94 Aligned_cols=56 Identities=14% Similarity=0.013 Sum_probs=32.4
Q ss_pred HHHHhccCcHHHHHHHHHHHhcCCCCCCHH-------HHHHHHHHHH--hCCChhhHHHHHHHHH
Q 048737 36 LITLIRGKQVDEALKFLRVMKGENCFPTLK-------FFSNALDILV--KLNDSTHTVQLWDIMV 91 (274)
Q Consensus 36 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~~ 91 (274)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 344566777777777777666655444422 2234444432 5677777777666544
No 296
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=70.74 E-value=21 Score=23.92 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=18.4
Q ss_pred ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcc
Q 048737 186 EPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLS 223 (274)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 223 (274)
..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34445555555555544444444444444455555443
No 297
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=70.54 E-value=12 Score=25.54 Aligned_cols=60 Identities=13% Similarity=0.012 Sum_probs=34.5
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhc--CCccCccHHhHHHHHHHHHhcCChh
Q 048737 56 KGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGI--GFNLMPNLIMYNAVVGLLCNNNDVD 118 (274)
Q Consensus 56 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (274)
.+.|++++..- ..++..+...+..-.|.++++.+.+. + ...+..|.-.-++.+...|-..
T Consensus 25 ~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~--~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 25 RQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPD--LNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGG--GCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHCCCEE
Confidence 34566665443 34455555556666777777777665 4 3445555555556666666543
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=70.42 E-value=12 Score=26.70 Aligned_cols=174 Identities=9% Similarity=0.021 Sum_probs=77.9
Q ss_pred HHHHHhccCcHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCcc---HHhHHHHH
Q 048737 35 FLITLIRGKQVDEALKFLRVMKGENCFPTL---KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPN---LIMYNAVV 108 (274)
Q Consensus 35 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~ 108 (274)
.+...+..|+.+-+..+++ .|..++. ..-...+...+..|+.+-+ +.+.+.| ..++ ....+ .+
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~t~L~~A~~~~~~~~v----~~Ll~~g--~~~~~~~~~g~t-~l 113 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYIS----KGAIVDQLGGDLNSTPLHWATRQGHLSMV----VQLMKYG--ADPSLIDGEGCS-CI 113 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TTCCTTCCBTTTTBCHHHHHHHHTCHHHH----HHHHHTT--CCTTCCCTTSCC-HH
T ss_pred HHHHHHHhCCHHHHHHHHH----cCCcchhhcCCcCCChhHHHHHcCCHHHH----HHHHHcC--CCCcccCCCCCC-HH
Confidence 4556667787765544443 3332221 1011233444456665544 4444555 3333 22222 33
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcch---HHHHHHHHH
Q 048737 109 GLLCNNNDVDNVFRFFDQMVFHGAFPDS---LTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLN---CATAITMLL 182 (274)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~ 182 (274)
...+..|+.+ +++.+.+.|..++. ...+.+..+... ++.....++ +.+.|..++... -.+.+...+
T Consensus 114 ~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~---L~~~~~~~~~~~~~~g~t~L~~A~ 185 (240)
T 3eu9_A 114 HLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYR-THSVDPTRL---LLTFNVSVNLGDKYHKNTALHWAV 185 (240)
T ss_dssp HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCSSTTHHH---HHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred HHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHh-CChHHHHHH---HHhcCCCcchhhccCCCcHHHHHH
Confidence 4445556655 44444445544432 223444444433 333333333 344444443321 123455666
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHH--HHHHHHHHHhcCCcchHHHHHHH
Q 048737 183 DADEPEFAIEIWNYILENGILPLEAS--ANVLLVGLRNLGRLSDVRRFAEE 231 (274)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~ 231 (274)
..|+.+-+..+++ .|..++... -...+....+.|+.+-+.-+++.
T Consensus 186 ~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 186 LAGNTTVISLLLE----AGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHTCHHHHHHHHH----HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 7788775555543 344443211 01233444556666555544443
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=70.25 E-value=9.6 Score=27.63 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHhcCCccCc-cHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh
Q 048737 80 STHTVQLWDIMVGIGFNLMP-NLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS 136 (274)
Q Consensus 80 ~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 136 (274)
.+.+..+|..|...| +-. -...|-.....+...|++.+|.++|+.-.+.+-.|-.
T Consensus 130 ~~~p~~if~~L~~~~--IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 130 IDEPVELFSFLAHHH--IGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp CSCHHHHHHHHHHTT--CSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred cCCHHHHHHHHHHCC--cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 367889999999887 433 4567888889999999999999999999988878743
No 300
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=68.45 E-value=38 Score=26.04 Aligned_cols=70 Identities=11% Similarity=0.012 Sum_probs=30.2
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCCH-hHHHHHHHHHHh----CCC--CCCcchHHHHHHHHHhcCChHHHHHH
Q 048737 124 FDQMVFHGAFPDSLTYNMIFECLIKNKKV-HEVENFFHEMIK----NEW--QPTPLNCATAITMLLDADEPEFAIEI 193 (274)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 193 (274)
.+-..+.+++++......++..+.....- ..-.++++++++ .|- .-++.....+...|.+.+++.+|+.-
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 33444445555555555555554442211 122334444431 111 11334445555555555555555443
No 301
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=68.05 E-value=15 Score=21.36 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=32.7
Q ss_pred HHHCCCCccHHHHHHHHHHHHhcC-CcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 048737 197 ILENGILPLEASANVLLVGLRNLG-RLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNES 255 (274)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 255 (274)
+.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 445565554433 33444444443 45566677777766655556666666666666655
No 302
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=67.99 E-value=31 Score=24.83 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=11.3
Q ss_pred HHHhccCcHHHHHHHHHHHhc
Q 048737 37 ITLIRGKQVDEALKFLRVMKG 57 (274)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~ 57 (274)
..|.+.|.+++|.+++++...
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHhcchHHHHHHHHHHhc
Confidence 345555555555555555543
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=67.41 E-value=34 Score=25.04 Aligned_cols=91 Identities=5% Similarity=0.053 Sum_probs=48.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhc--CCCC----ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHH
Q 048737 106 AVVGLLCNNNDVDNVFRFFDQMVFH--GAFP----DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAIT 179 (274)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 179 (274)
--++.+....++++|..++++..+. +.++ +.......+..-.....-.-+..+.+.+ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3467788888888888888876542 1221 0111122222222222222333444444 22 344555666677
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 048737 180 MLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~ 199 (274)
.+.+.|+.++|.++|-+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 77778888888887766554
No 304
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=66.99 E-value=30 Score=24.50 Aligned_cols=149 Identities=9% Similarity=0.046 Sum_probs=70.5
Q ss_pred HHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh---hhHHHHHHHHH
Q 048737 71 LDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS---LTYNMIFECLI 147 (274)
Q Consensus 71 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~ 147 (274)
+...+..|+++....+++.-...- ..++..-++. +...+..|+.+- ++.+.+.|..++. ..++.+.. .+
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~--~~~~~~g~t~-L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~-A~ 81 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLA--TRTDQDSRTA-LHWACSAGHTEI----VEFLLQLGVPVNDKDDAGWSPLHI-AA 81 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGG--GCCCTTSCCH-HHHHHHHTCHHH----HHHHHHTTCCSCCCCTTSCCHHHH-HH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhh--hcCCCCCCCH-HHHHHHcCcHHH----HHHHHHhCCCCCCcCCCCCCHHHH-HH
Confidence 555667888888877776533211 1222222333 333455566544 4444455554443 23333433 34
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCcch--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHH--HHHHHHHHHhcCCcc
Q 048737 148 KNKKVHEVENFFHEMIKNEWQPTPLN--CATAITMLLDADEPEFAIEIWNYILENGILPLEAS--ANVLLVGLRNLGRLS 223 (274)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~ 223 (274)
..|+.+ +++.+.+.|..++... -.+.+...+..|+.+.+..++ +.|..++... -...+...+..|+.+
T Consensus 82 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~ 153 (231)
T 3aji_A 82 SAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL----EGGANPDAKDHYDATAMHRAAAKGNLK 153 (231)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred HcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 556654 4444555555444321 123444555677777555444 4454443211 112233344556654
Q ss_pred hHHHHHHHHHhCCCcc
Q 048737 224 DVRRFAEEMLNRRILI 239 (274)
Q Consensus 224 ~a~~~~~~m~~~~~~~ 239 (274)
- ++.+.+.|..+
T Consensus 154 ~----v~~Ll~~g~~~ 165 (231)
T 3aji_A 154 M----VHILLFYKAST 165 (231)
T ss_dssp H----HHHHHHTTCCS
T ss_pred H----HHHHHhcCCCc
Confidence 3 34444455443
No 305
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=66.34 E-value=14 Score=27.31 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=10.3
Q ss_pred HhCCChhhHHHHHHHHHhcC
Q 048737 75 VKLNDSTHTVQLWDIMVGIG 94 (274)
Q Consensus 75 ~~~~~~~~a~~~~~~~~~~~ 94 (274)
+..|+.+.+..+++.....+
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHSC
T ss_pred HHcCCHHHHHHHHHHHhhcc
Confidence 34555555555555544433
No 306
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=65.89 E-value=11 Score=20.76 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=18.3
Q ss_pred hccCcHHHHHHHHHHHhcCCCCCC
Q 048737 40 IRGKQVDEALKFLRVMKGENCFPT 63 (274)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~~~~~ 63 (274)
...|+.+.|+..+-+|...+..|+
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 556788888888888877666665
No 307
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=65.25 E-value=12 Score=22.91 Aligned_cols=38 Identities=8% Similarity=0.068 Sum_probs=26.0
Q ss_pred CcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHH
Q 048737 43 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTV 84 (274)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (274)
...++|.++++.+..+| +..|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 56788888888888776 245677777776656655443
No 308
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=64.87 E-value=35 Score=24.25 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=22.2
Q ss_pred HHHHHHHHh---ccCcHHHHHHHHHHHhcCCCCC
Q 048737 32 YETFLITLI---RGKQVDEALKFLRVMKGENCFP 62 (274)
Q Consensus 32 ~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~ 62 (274)
+.-+|+++. +..+++.|+-++.+|++.| .|
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp 46 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DL 46 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CH
Confidence 344666764 4478899999999999888 44
No 309
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=64.77 E-value=30 Score=23.52 Aligned_cols=48 Identities=13% Similarity=0.009 Sum_probs=22.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC--CCCccHHHHHHHHHHHHhcCCcc
Q 048737 176 TAITMLLDADEPEFAIEIWNYILEN--GILPLEASANVLLVGLRNLGRLS 223 (274)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 223 (274)
.++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-+.
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3344444444444555555555544 33333334333344444444443
No 310
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=64.67 E-value=35 Score=24.19 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=34.9
Q ss_pred HHHHHHHHh---ccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-----ChhhHHHHHHHHHhcC
Q 048737 32 YETFLITLI---RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN-----DSTHTVQLWDIMVGIG 94 (274)
Q Consensus 32 ~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~ 94 (274)
+.-+|+++. +..+++.|+-++.+|++.|..|.-..-..++-+.-.-| -+..|...++.....|
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 344666664 44788888888889988876553333333333332222 2234444455555555
No 311
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=64.29 E-value=24 Score=22.95 Aligned_cols=44 Identities=18% Similarity=0.067 Sum_probs=18.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 048737 178 ITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGR 221 (274)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 221 (274)
+..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 33333344444455555555444433333343333444444443
No 312
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=62.60 E-value=38 Score=23.97 Aligned_cols=20 Identities=5% Similarity=-0.179 Sum_probs=9.8
Q ss_pred HhcCCcchHHHHHHHHHhCC
Q 048737 217 RNLGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 217 ~~~g~~~~a~~~~~~m~~~~ 236 (274)
+..|+.+-+..+++.+.+.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 44455554444455555444
No 313
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=61.94 E-value=41 Score=24.09 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=21.8
Q ss_pred HHHHHHHHHhc---cCcHHHHHHHHHHHhcCCCCCC
Q 048737 31 AYETFLITLIR---GKQVDEALKFLRVMKGENCFPT 63 (274)
Q Consensus 31 ~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~ 63 (274)
.+.-+|+++.+ ..+++.|+-++.+|++.|..|.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~ 69 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPN 69 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHH
Confidence 34446666644 4778888888888887775553
No 314
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=61.53 E-value=55 Score=25.43 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=12.1
Q ss_pred cccccchHHHHHHHHHHHh
Q 048737 2 WEKEGNVVEANKTFGEMVE 20 (274)
Q Consensus 2 ~~~~g~~~~a~~~~~~~~~ 20 (274)
|...|++++|.+.++++..
T Consensus 21 y~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 21 YLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHCCHHHHHHHHHTTCC
T ss_pred HHhCCCHHHHHHHHHHcCC
Confidence 3455677777777776643
No 315
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=61.11 E-value=21 Score=23.49 Aligned_cols=42 Identities=5% Similarity=0.121 Sum_probs=18.6
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 048737 214 VGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNES 255 (274)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 255 (274)
..+...+..-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 21 ~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 333333344445555555544444444444444444444443
No 316
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=60.93 E-value=59 Score=25.58 Aligned_cols=76 Identities=9% Similarity=0.208 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 048737 138 TYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADE--PEFAIEIWNYILENGILPLEASANVLLV 214 (274)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 214 (274)
....++.-|...++.++|.+.++++...... .......+..+.-+.++ .+....++..+...|+-+.......+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4578899999999999999999998531100 12233344444444333 4567888888888777554444333333
No 317
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=60.92 E-value=55 Score=25.19 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=12.6
Q ss_pred HHhcCChHHHHHHHHHHH
Q 048737 181 LLDADEPEFAIEIWNYIL 198 (274)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~ 198 (274)
|.-.++...|..+++...
T Consensus 198 yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 445678888888777654
No 318
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=60.44 E-value=34 Score=22.69 Aligned_cols=15 Identities=0% Similarity=-0.084 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHHhcC
Q 048737 80 STHTVQLWDIMVGIG 94 (274)
Q Consensus 80 ~~~a~~~~~~~~~~~ 94 (274)
.-.|.++++.+.+.+
T Consensus 33 h~ta~ei~~~l~~~~ 47 (145)
T 3eyy_A 33 HATPDDILGEVRKTA 47 (145)
T ss_dssp SBCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhhC
Confidence 445555555555444
No 319
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=60.17 E-value=11 Score=20.77 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048737 118 DNVFRFFDQMVFHGAFPDSLTYNMIFECL 146 (274)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 146 (274)
++|.+.|.+|++..-.++..||...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34444444444332223334444444444
No 320
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=59.80 E-value=13 Score=22.10 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcH
Q 048737 7 NVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 45 (274)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 45 (274)
..++|...|..|....++.| + .+|...+...+..-++
T Consensus 15 t~eea~~~Fk~LL~e~~V~p-~-~tWe~~~~~i~~DpRY 51 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSA-F-STWEKELHKIVFDPRY 51 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCS-S-SCHHHHHHHHHTCSGG
T ss_pred CHHHHHHHHHHHHHHcCcCC-C-CCHHHHHHHHccCCcc
Confidence 45777888888877777777 3 3677766665554443
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=58.68 E-value=37 Score=22.50 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=15.9
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcC
Q 048737 56 KGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIG 94 (274)
Q Consensus 56 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 94 (274)
.+.|+++++.- ..++..+...+..-.|.++++.+.+.+
T Consensus 14 ~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~ 51 (145)
T 2fe3_A 14 KETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKF 51 (145)
T ss_dssp HHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGC
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhC
Confidence 33444444332 222333333344444555555554443
No 322
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=58.21 E-value=55 Score=24.34 Aligned_cols=154 Identities=14% Similarity=-0.011 Sum_probs=75.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHH---hHHHHH
Q 048737 35 FLITLIRGKQVDEALKFLRVMKGENCFPT---LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLI---MYNAVV 108 (274)
Q Consensus 35 li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~l~ 108 (274)
.+...+..|+.+-+..++ +.|..++ ..-.+ .+...+..|+.+-+.-+++ .| ..++.. -+.+.+
T Consensus 65 ~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~----~g--a~~~~~~~~g~~t~L 133 (285)
T 3kea_A 65 PLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFVK----KN--WRLMFYGKTGWKTSF 133 (285)
T ss_dssp HHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHH----HC--GGGGGCSSSGGGSHH
T ss_pred HHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHHh----cC--CCCCccCCCCCCCHH
Confidence 444556777776554444 4454433 22222 3344456677665554444 45 333322 223445
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCh
Q 048737 109 GLLCNNNDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEP 187 (274)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (274)
...+..|+.+ +.+.+.+.|..+ +...-.+.+...+..|+.+-+.-+++.-..-.. .+..-.+..+...+..|+.
T Consensus 134 ~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~ 208 (285)
T 3kea_A 134 YHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI 208 (285)
T ss_dssp HHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH
T ss_pred HHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH
Confidence 5555666654 444444555333 221333444555677888776666665443221 2222222334444556665
Q ss_pred HHHHHHHHHHHHCCCCccHHH
Q 048737 188 EFAIEIWNYILENGILPLEAS 208 (274)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~ 208 (274)
+ +.+.+.+.|..|+...
T Consensus 209 ~----~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 209 E----MLQALFKYDINIYSAN 225 (285)
T ss_dssp H----HHHHHTTSCBCSTTTT
T ss_pred H----HHHHHHHcCCCCCCCC
Confidence 4 4444556676666543
No 323
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=57.37 E-value=92 Score=26.67 Aligned_cols=117 Identities=9% Similarity=0.016 Sum_probs=60.7
Q ss_pred chHHHHHHHHHHHhccCCCCchH-hHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHH
Q 048737 7 NVVEANKTFGEMVERFEWNPEHV-LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQ 85 (274)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~p~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 85 (274)
+.+.|...|..........+... ..+..++..+...+...++...+...... .++.....-.+....+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHH
Confidence 55667777766654322222111 12223333344445344555555554432 2343334444444456678888888
Q ss_pred HHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048737 86 LWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMV 128 (274)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (274)
.|+.|.... .......--+.+++...|+.++|..+|..+.
T Consensus 307 ~~~~l~~~~---~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 307 WLARLPMEA---KEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHSCTTG---GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccccc---cccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777765532 1223333334456667778777877777664
No 324
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=56.62 E-value=47 Score=23.13 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=33.0
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCC--CCc---------------chHHHHHHHHHhcCChHHHHHHHHHH
Q 048737 145 CLIKNKKVHEVENFFHEMIKNEWQ--PTP---------------LNCATAITMLLDADEPEFAIEIWNYI 197 (274)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (274)
+|-+..++.+|...++.++...+. ||. ..++.+...|...|+.++|+..+..-
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 344556666666666666644332 211 23566677788889999998877653
No 325
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=56.26 E-value=56 Score=23.87 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=12.2
Q ss_pred HHHHHhccCcHHHHHHHHHHHh
Q 048737 35 FLITLIRGKQVDEALKFLRVMK 56 (274)
Q Consensus 35 li~~~~~~~~~~~a~~~~~~~~ 56 (274)
-+..+....++++|.+++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3455555556666666555544
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=56.11 E-value=39 Score=22.04 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=16.2
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCC-ChhhHHHHHHHHHhcC
Q 048737 56 KGENCFPTLKFFSNALDILVKLN-DSTHTVQLWDIMVGIG 94 (274)
Q Consensus 56 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~ 94 (274)
.+.|+++++.-. .++..+...+ ..-.|.++++.+.+.+
T Consensus 10 ~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~ 48 (136)
T 1mzb_A 10 RKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAG 48 (136)
T ss_dssp HHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTT
T ss_pred HHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhC
Confidence 334444443322 2233333333 4445555555555544
No 327
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=55.99 E-value=47 Score=22.91 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=28.9
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcCCccCccH---HhHHHHHHHHHh-cCChhhHHHHHHHHHhcCCCCC
Q 048737 70 ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNL---IMYNAVVGLLCN-NNDVDNVFRFFDQMVFHGAFPD 135 (274)
Q Consensus 70 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~ 135 (274)
.+...+..|+.+.-.++.+.+++.| ..++. .-++.|..++.. ..+.....++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~G--advn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKG--ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTT--CCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCC--CCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 3444445555554555666666666 33332 112222222221 1223334555555666665554
No 328
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=55.87 E-value=17 Score=20.88 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCc
Q 048737 7 NVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 44 (274)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~ 44 (274)
..++|.+.|.+|....++.| + .+|...+..+...-+
T Consensus 13 t~eea~~~F~~LL~e~~V~~-~-~tWe~~~~~i~~DpR 48 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPS-N-ASWEQAMKMIINDPR 48 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCT-T-CCHHHHHHHHHTSGG
T ss_pred CHHHHHHHHHHHHHHcCcCC-C-CCHHHHHHHHccCcc
Confidence 45677777777776667666 2 356666665554433
No 329
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=55.56 E-value=43 Score=22.34 Aligned_cols=14 Identities=7% Similarity=0.351 Sum_probs=6.1
Q ss_pred hhhHHHHHHHHHhc
Q 048737 80 STHTVQLWDIMVGI 93 (274)
Q Consensus 80 ~~~a~~~~~~~~~~ 93 (274)
.-.|.++++.+.+.
T Consensus 33 h~sa~ei~~~l~~~ 46 (150)
T 2w57_A 33 HISAEELYKKLIDL 46 (150)
T ss_dssp SEEHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh
Confidence 33444444444443
No 330
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=55.29 E-value=47 Score=22.66 Aligned_cols=60 Identities=8% Similarity=-0.013 Sum_probs=37.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhcCCCCC--CHHHHHHHHH-H-----HHhCCChhhHHHHHHHHHh
Q 048737 32 YETFLITLIRGKQVDEALKFLRVMKGENCFP--TLKFFSNALD-I-----LVKLNDSTHTVQLWDIMVG 92 (274)
Q Consensus 32 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 92 (274)
|..-+..+ ..|++=+|.++++..-...-.+ +...|..||. . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33333333 3488888888888877654444 4555666666 2 2356777777777777765
No 331
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=55.27 E-value=47 Score=22.70 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCh--HHHHHHHHHHHHCCC
Q 048737 138 TYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEP--EFAIEIWNYILENGI 202 (274)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~ 202 (274)
....++.-|...++.++|...++++.... ........++......++. +.+..++..+.. ++
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ 75 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TV 75 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CC
Confidence 35678888989999999999999875311 1122233444444444432 335566666643 44
No 332
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=53.97 E-value=27 Score=19.59 Aligned_cols=56 Identities=20% Similarity=0.062 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChhHHHHHHH
Q 048737 208 SANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRSMRDRFDS 264 (274)
Q Consensus 208 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~a~~~~~~ 264 (274)
.++.++..++...-.++++-.+.+..+.|. .+..+|..-++.+++..-..+.+..+
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaReQF~~Rali~K 59 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQQFLVRWHIQR 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666653 35555555555555543334444433
No 333
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=53.11 E-value=82 Score=24.82 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC---cchHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCccHHHHHH
Q 048737 137 LTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT---PLNCATAITMLLDADEP--EFAIEIWNYILENGILPLEASANV 211 (274)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ 211 (274)
.....++.-|...|+.++|...++++.. |+ ......++......++. +.+..++..+...++-+.......
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~G 88 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQA 88 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 3567788999999999999999998852 43 12333444444444432 446667777777666444444444
Q ss_pred HHHH
Q 048737 212 LLVG 215 (274)
Q Consensus 212 l~~~ 215 (274)
+...
T Consensus 89 f~~l 92 (364)
T 3l6a_A 89 FLNV 92 (364)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 334
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=50.11 E-value=1.2e+02 Score=25.93 Aligned_cols=112 Identities=6% Similarity=-0.026 Sum_probs=52.6
Q ss_pred CHhHHHHHHHHHHhCCCCCCcchHHH----HHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHH
Q 048737 151 KVHEVENFFHEMIKNEWQPTPLNCAT----AITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVR 226 (274)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 226 (274)
+++.|...+....+.. ..+...... +.......+...++...+....... ++.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 5666777776665432 122222222 2222222332334455555443322 22223333444444567777777
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHH
Q 048737 227 RFAEEMLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLE 266 (274)
Q Consensus 227 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~ 266 (274)
..|+.|...... ...-..-+..++...|+. |..++..+.
T Consensus 306 ~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 306 TWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777776553221 233334444555566655 666665554
No 335
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=49.75 E-value=59 Score=22.18 Aligned_cols=50 Identities=6% Similarity=0.111 Sum_probs=26.2
Q ss_pred CChhhHHHHHHHHHhcCCCC--ChhhHHHHHH------HHHhcCCHhHHHHHHHHHHh
Q 048737 115 NDVDNVFRFFDQMVFHGAFP--DSLTYNMIFE------CLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~------~~~~~~~~~~a~~~~~~~~~ 164 (274)
|++-+|-++|+..=.....+ ....|..||+ ...+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666654443333 3344444444 12345666666666665543
No 336
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=49.52 E-value=64 Score=22.51 Aligned_cols=86 Identities=12% Similarity=0.057 Sum_probs=53.7
Q ss_pred HHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCc--------------c-HH
Q 048737 38 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMP--------------N-LI 102 (274)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~-~~ 102 (274)
.+--.|.+.+++-++.... ..+..-|-. -++-+..++..|...++.+.....+-.| | ..
T Consensus 42 ~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEf 115 (242)
T 3kae_A 42 VLYLNGEYTRALFHLHKLN----TCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEF 115 (242)
T ss_dssp HHHHTTCHHHHHHHHHTCC----BHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHH
T ss_pred hhhhcchHhHHHHHHHhcc----hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHH
Confidence 3455677877777664322 222333333 3556778888888888888754411111 2 34
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
.++.+...+.+.|+.++|+..+..--.
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 577777888889999999998876543
No 337
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=49.45 E-value=23 Score=23.24 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=8.6
Q ss_pred HHhccCcHHHHHHHHHH
Q 048737 38 TLIRGKQVDEALKFLRV 54 (274)
Q Consensus 38 ~~~~~~~~~~a~~~~~~ 54 (274)
..+..|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 33445555555555544
No 338
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.25 E-value=1.5e+02 Score=26.86 Aligned_cols=108 Identities=12% Similarity=-0.004 Sum_probs=61.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------------------
Q 048737 142 IFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGI------------------- 202 (274)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------- 202 (274)
++..|...|.++-+.++..- .+.++..--.+..+|...|++++|...|++.-. |+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 44555555655544332211 112222222345556666677777666654321 11
Q ss_pred ----CccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCH----HHHHHHHHHHHhcC
Q 048737 203 ----LPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYD----VTMQKLKKAFYNES 255 (274)
Q Consensus 203 ----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g 255 (274)
.....-|..++..+-+.+.++.+.++-+..++.--.-|. ..+..++++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 112236788999999999999999988888764222222 35667777766544
No 339
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.18 E-value=1.2e+02 Score=25.40 Aligned_cols=66 Identities=5% Similarity=-0.070 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCcc--HHhHH-HHHHHHHhcCChhhHHHHHHHHHhc
Q 048737 64 LKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPN--LIMYN-AVVGLLCNNNDVDNVFRFFDQMVFH 130 (274)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (274)
...+|.+++.|...+.++.|..+.....--.. ..++ ...|. -+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34677888888889999999998887742100 0111 12232 2346667778898998888887654
No 340
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=48.75 E-value=23 Score=27.56 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=64.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCc--chHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCccHHH---HH
Q 048737 138 TYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTP--LNCATAITMLLDAD--EPEFAIEIWNYILENGILPLEAS---AN 210 (274)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~---~~ 210 (274)
....++.-|...|+.++|...++++.. |.- .....++......+ ..+.+..++..+.+.++-+.... +.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~----p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~ 88 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELAS----PSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLY 88 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCC----GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC----cccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 456788899999999999988887742 321 11122222222222 23456677777777665333322 22
Q ss_pred HHHHHHHhc-CCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCh-h--HHHHHHHHHHHh
Q 048737 211 VLLVGLRNL-GRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESR-S--MRDRFDSLERRW 269 (274)
Q Consensus 211 ~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~-~--a~~~~~~~~~~~ 269 (274)
.++..+-.. =|...|...+.++...-+.-+..+...++....+.-. . +..++..+.+.+
T Consensus 89 ~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l 151 (339)
T 1ug3_A 89 EILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLL 151 (339)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHH
T ss_pred HHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 222222211 2455666666666554444333444344444332211 1 444554454444
No 341
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=48.19 E-value=42 Score=20.17 Aligned_cols=63 Identities=8% Similarity=0.092 Sum_probs=41.0
Q ss_pred HHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhH
Q 048737 11 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHT 83 (274)
Q Consensus 11 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 83 (274)
...+++.+.++ |+-. ..-+..+- ......++|..+++.+..+| +..|..++.++...+...-|
T Consensus 24 v~~lld~L~~~-~vlt--~~~~e~I~---~~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISD-GFLT--ISEEEKVR---NEPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHH-TSSC--HHHHHHHH---TSSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHC-CCCC--HHHHHHHH---cCCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHHHH
Confidence 34577777775 5443 22233222 24678889999999888876 56778888888777764443
No 342
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=48.12 E-value=65 Score=22.19 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=30.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChh---hHHHHHHHHHh-cCCHhHHHHHHHHHHhCCCCCCc
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFPDSL---TYNMIFECLIK-NKKVHEVENFFHEMIKNEWQPTP 171 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~ 171 (274)
+...+..|+.+.-.++.+-+.+.|..++.. -++.|..++.. ..+.....++.+.+++.|..++.
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence 344445555555555666666666555432 12223222221 22333445555666666655543
No 343
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=47.69 E-value=27 Score=24.84 Aligned_cols=14 Identities=7% Similarity=-0.130 Sum_probs=6.5
Q ss_pred HHHHHhcCChHHHH
Q 048737 178 ITMLLDADEPEFAI 191 (274)
Q Consensus 178 ~~~~~~~~~~~~a~ 191 (274)
+...+..|+.+-+.
T Consensus 148 L~~A~~~~~~~~~~ 161 (237)
T 3b7b_A 148 LHWAAFSGCVDIAE 161 (237)
T ss_dssp HHHHHHHCCHHHHH
T ss_pred HHHHHHCCCHHHHH
Confidence 33444556655333
No 344
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=47.56 E-value=73 Score=22.64 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=30.7
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--H---hHHHHHHHHHHhCCC
Q 048737 113 NNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKK--V---HEVENFFHEMIKNEW 167 (274)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~---~~a~~~~~~~~~~~~ 167 (274)
|-.+++.|+-.+-+|++.| .|.-..=..++.+...-|. + ..|...++.....|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3467778888888888877 5554444455555554442 2 234444454455554
No 345
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=47.32 E-value=1.1e+02 Score=24.78 Aligned_cols=29 Identities=7% Similarity=0.063 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHHhCCChhhHHHHHHHHHh
Q 048737 62 PTLKFFSNALDILVKLNDSTHTVQLWDIMVG 92 (274)
Q Consensus 62 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 92 (274)
.+......+... ..|+...+..+++.+..
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 444444444443 34556566655555543
No 346
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=47.01 E-value=47 Score=21.46 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=19.0
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048737 110 LLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 150 (274)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 150 (274)
.+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 19 ~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 19 LLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33334444455555555555444444444444444444444
No 347
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=46.89 E-value=59 Score=21.39 Aligned_cols=7 Identities=14% Similarity=-0.002 Sum_probs=2.9
Q ss_pred HhcCChH
Q 048737 182 LDADEPE 188 (274)
Q Consensus 182 ~~~~~~~ 188 (274)
+..|+.+
T Consensus 116 ~~~~~~~ 122 (165)
T 3twr_A 116 AAKGKYE 122 (165)
T ss_dssp HHTTCHH
T ss_pred HHcCCHH
Confidence 3344443
No 348
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=46.66 E-value=93 Score=23.59 Aligned_cols=143 Identities=13% Similarity=0.091 Sum_probs=68.9
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcch--HHHHHHHHHhc
Q 048737 110 LLCNNNDVDNVFRFFDQMVFHGAFPDS---LTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLN--CATAITMLLDA 184 (274)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 184 (274)
..++.|+.+-+..++++ .|..++. ...+.+..+... +.......+.+.+.+.|..++... -.+.+...+..
T Consensus 174 ~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~ 249 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 249 (337)
T ss_dssp HHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh
Confidence 34455666544444432 3433332 222333333222 222334445555677776665432 12344556677
Q ss_pred CChHHHHHHHHHHHHCCCCcc---HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcChhHHHH
Q 048737 185 DEPEFAIEIWNYILENGILPL---EASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNESRSMRDR 261 (274)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~a~~~ 261 (274)
|..+.+..++.. .|..++ ..-.+.|..+ +..|+. ++.+.+++.|..+|..+ .+...++.|+. ++
T Consensus 250 ~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~----~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~--~i 316 (337)
T 4g8k_A 250 KHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLK----KIAELLCKRGASTDCGD---LVMTARRNYDH--SL 316 (337)
T ss_dssp TCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCH----HHHHHHHTTSCSSTTCC---HHHHHHHTTCH--HH
T ss_pred hhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCH----HHHHHHHHCCCCCCCCC---HHHHHHHcCCH--HH
Confidence 887766655432 232222 2222333333 455654 35566677787776554 33334455666 55
Q ss_pred HHHHHHHh
Q 048737 262 FDSLERRW 269 (274)
Q Consensus 262 ~~~~~~~~ 269 (274)
.+.+++++
T Consensus 317 v~~Ll~~G 324 (337)
T 4g8k_A 317 VKVLLSHG 324 (337)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCc
Confidence 55565554
No 349
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=46.61 E-value=43 Score=25.87 Aligned_cols=216 Identities=13% Similarity=0.049 Sum_probs=99.1
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL---KFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMY 104 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (274)
|..-++. +...+..|+.+-+..+++ .|..++. .-.+ .+...+..|+.+-+.. +.+.| ..++...-
T Consensus 17 d~~g~t~-L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~----Ll~~g--~~~~~~~g 84 (364)
T 3ljn_A 17 DDENMEK-IHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCT-ALHLACKFGCVDTAKY----LASVG--EVHSLWHG 84 (364)
T ss_dssp CHHHHHH-HHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCC-HHHHHHHHCCHHHHHH----HHHHC--CCCCCBTT
T ss_pred CCCCCCH-HHHHHHcCCHHHHHHHHH----cCCCccccCCCCCc-HHHHHHHcCCHHHHHH----HHHCC--CCccccCC
Confidence 4444444 445566787766555554 4443332 2222 3444455677654444 44444 22322112
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh--------------------hhHHHHHHHHHhcC--CHhHHHHHHHHH
Q 048737 105 NAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS--------------------LTYNMIFECLIKNK--KVHEVENFFHEM 162 (274)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~li~~~~~~~--~~~~a~~~~~~~ 162 (274)
.+.+...+..|+.+-+..+++.....|..++. .-.+.|.. .+..| +.+-+.. +
T Consensus 85 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~~~v~~----L 159 (364)
T 3ljn_A 85 QKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHW-CVGLGPEYLEMIKI----L 159 (364)
T ss_dssp BCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHH-HHHSCGGGHHHHHH----H
T ss_pred CCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHH-HHHcCCchHHHHHH----H
Confidence 22344455668877777777765444443332 12333333 34556 4443333 3
Q ss_pred HhCCCCCCcch--HHHHHHHHHhcCChHHHHHHHHHHHH-CCCCc---cHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 048737 163 IKNEWQPTPLN--CATAITMLLDADEPEFAIEIWNYILE-NGILP---LEASANVLLVGLRNLGRLSDVRRFAEEMLNRR 236 (274)
Q Consensus 163 ~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 236 (274)
.+.|..++... -.+.+...+..|+.+-+..+++.-.. .+..+ +....+.| ...+..|+.+ +++.+.+.|
T Consensus 160 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~g 234 (364)
T 3ljn_A 160 VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWED----VAMRFVEMG 234 (364)
T ss_dssp HHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHH----HHHHHHTTT
T ss_pred HHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHH----HHHHHHHcC
Confidence 33354444322 12344455677887766666554222 00001 11222222 2334556554 445555666
Q ss_pred CccCHH---HHHHHHHHHHhcChhHHHHHHHHHHH
Q 048737 237 ILIYDV---TMQKLKKAFYNESRSMRDRFDSLERR 268 (274)
Q Consensus 237 ~~~~~~---~~~~l~~~~~~~g~~a~~~~~~~~~~ 268 (274)
..++.. -.+. +...+..|.. ++.+.+++.
T Consensus 235 ad~~~~d~~g~tp-L~~A~~~g~~--~~v~~Ll~~ 266 (364)
T 3ljn_A 235 IDVNMEDNEHTVP-LYLSVRAAMV--LLTKELLQK 266 (364)
T ss_dssp CCTTCCCTTSCCH-HHHHHHTCCH--HHHHHHHHH
T ss_pred CCCCCCCCCCCCH-HHHHHHhChH--HHHHHHHHc
Confidence 554432 1222 3333445665 444444444
No 350
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=46.52 E-value=46 Score=21.86 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=21.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048737 107 VVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 150 (274)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 150 (274)
++..+...++.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33444444445555555555555544444444444444444444
No 351
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=45.98 E-value=1.2e+02 Score=24.86 Aligned_cols=109 Identities=9% Similarity=0.154 Sum_probs=56.7
Q ss_pred CcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHH
Q 048737 43 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFR 122 (274)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 122 (274)
.+.+-|.++..+ .|++.-...|..-.+.+...|++++|-++--...+ | +-.+..|.+.+-.+=..-|+..--+.
T Consensus 343 ~n~~lA~~lA~R---~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-g--iLRt~~Ti~rFk~vp~~pgq~splL~ 416 (494)
T 1bpo_A 343 QNPDLALRMAVR---NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-G--ILRTPDTIRRFQSVPAQPGQTSPLLQ 416 (494)
T ss_dssp CCHHHHHHHHHH---TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-G--SSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred CCHHHHHHHHHh---cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-c--cccCHHHHHHHhcCCCCCCCCCHHHH
Confidence 555555555433 34555555666666666777777777665544332 2 33455555555444444555555666
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 048737 123 FFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENF 158 (274)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 158 (274)
+|..+.+.| +.+..-=-.+++.-...|+.+-.++.
T Consensus 417 YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 417 YFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHH
Confidence 666666554 23433333344444445554443333
No 352
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=45.84 E-value=73 Score=22.15 Aligned_cols=171 Identities=12% Similarity=-0.036 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHH
Q 048737 62 PTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNM 141 (274)
Q Consensus 62 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (274)
++...-...+..+.+.+..+....+. .+.. .++..+-...+.++.+.++.+ +...+..+.. .++...-..
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~-----~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~ 100 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLI-KALK-----DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQS 100 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT-----CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHH-HHHc-----CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHH
Confidence 34444445555555555533333333 3332 234455555556666666543 3333334333 255555566
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 048737 142 IFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGR 221 (274)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 221 (274)
.+.++...++.+ +...+..+.+ .++...-...+.++...++.+ +...+..+.+ .++..+-...+.++.+.+.
T Consensus 101 a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 101 AAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 666666666643 3344444443 356666666666777666654 3333333332 2445555566666666665
Q ss_pred cchHHHHHHHHHhCCCccCHHHHHHHHHHHHhc
Q 048737 222 LSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNE 254 (274)
Q Consensus 222 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 254 (274)
+++...+..+.+. ++...-...+.++.+.
T Consensus 173 -~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 173 -ERVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp -HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred -hhHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 3455555555442 3444444444444443
No 353
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=44.34 E-value=87 Score=22.60 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=25.8
Q ss_pred HhHHHHHHHHHHhCCCCCCcc--hH-----HHHHHHHHhcCChHHHHHHHHHHHHC
Q 048737 152 VHEVENFFHEMIKNEWQPTPL--NC-----ATAITMLLDADEPEFAIEIWNYILEN 200 (274)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~--~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (274)
.+.|+.+|+.+.+.-..++.. .. ...+-.|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 456777776665532111111 11 12344566677777777777666553
No 354
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=43.47 E-value=56 Score=20.11 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=29.0
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHH-----HhCCCccCHHHHHHH
Q 048737 190 AIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEM-----LNRRILIYDVTMQKL 247 (274)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m-----~~~~~~~~~~~~~~l 247 (274)
|..+.+++...|+.|+..+..-++..|...+. + +.++.++. ...|..|+..+.+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 45555555566666666666666666655553 1 33332222 223556665554443
No 355
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=42.45 E-value=87 Score=22.02 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=33.2
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCcch--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 048737 145 CLIKNKKVHEVENFFHEMIKNEWQPTPLN--CATAITMLLDADEPEFAIEIWNYILENGILP 204 (274)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 204 (274)
..+..|+.+- ++.+.+.|..++... -.+.+...+..|+.+.+..+++.+.+.|..+
T Consensus 127 ~A~~~~~~~~----v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 127 FAACVGSEEI----VRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHcCCHHH----HHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 3345566543 444445565554321 1244566677888888888888888776533
No 356
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.45 E-value=76 Score=21.10 Aligned_cols=38 Identities=8% Similarity=-0.067 Sum_probs=17.2
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048737 113 NNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 150 (274)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 150 (274)
..+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 38 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 38 RSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33344455555555544443344444444444444444
No 357
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.75 E-value=1.6e+02 Score=24.60 Aligned_cols=65 Identities=11% Similarity=0.053 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCc--chH-HHHHHHHHhcCChHHHHHHHHHHHHC
Q 048737 136 SLTYNMIFECLIKNKKVHEVENFFHEMIKNEW-QPTP--LNC-ATAITMLLDADEPEFAIEIWNYILEN 200 (274)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (274)
...+|.+++.|...+.++.|..+..+..--.. .+|. .+| -.+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46788899999999999999999988742100 1111 112 23345566778898998888776653
No 358
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=40.21 E-value=1.2e+02 Score=23.15 Aligned_cols=92 Identities=11% Similarity=0.196 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC---cchHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCccHHHHHHH
Q 048737 138 TYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT---PLNCATAITMLLDADE--PEFAIEIWNYILENGILPLEASANVL 212 (274)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (274)
....++.-|...|+.++|.+.++++.. |. ......+..+.-+.++ .+.+..++..+.+.|+-+.......+
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~----p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEV----PHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCC----GGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCC----CcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 346788889999999999999998852 31 1122333334433333 45577888888877765444333333
Q ss_pred HHHHHhcC----CcchHHHHHHHHH
Q 048737 213 LVGLRNLG----RLSDVRRFAEEML 233 (274)
Q Consensus 213 ~~~~~~~g----~~~~a~~~~~~m~ 233 (274)
...+.... |...|..++.++.
T Consensus 244 ~~vl~~l~Dl~lDiP~A~~~la~~v 268 (307)
T 2zu6_B 244 ERIYNEIPDINLDVPHSYSVLERFV 268 (307)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHhccHhhcccccHHHHHHHHH
Confidence 33222221 3445555544443
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.54 E-value=2.3e+02 Score=25.77 Aligned_cols=131 Identities=11% Similarity=0.044 Sum_probs=71.7
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 048737 70 ALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 149 (274)
Q Consensus 70 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 149 (274)
++..|...+..+-+.++. .. ++.+...--.+..+|...|++++|...|++.- .|+..+.......
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~---~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~------- 880 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GW---LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVL------- 880 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GG---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGG-------
T ss_pred HHHHHHHhcHHHHHHHHH----hh---cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccch-------
Confidence 555666666666554432 22 24444444567778888999999999998754 2332221110000
Q ss_pred CCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcc----HHHHHHHHHHHHhcC
Q 048737 150 KKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPL----EASANVLLVGLRNLG 220 (274)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g 220 (274)
.....++... +. ......-|..++..+-+.+.++.+.++-+...+.--.-| ...|+.+.++.+..|
T Consensus 881 ---~~~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 881 ---REFQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp ---HHHHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ---hhhhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0011111110 00 011223678888888889999988888877776321112 246777777766554
No 360
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=38.21 E-value=60 Score=25.12 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=36.5
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048737 158 FFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENG 201 (274)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (274)
++..+.+.|+.|...++.-++..+...=.++.+.++|+.+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 45556677888888888888888888778999999999998876
No 361
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.86 E-value=58 Score=18.73 Aligned_cols=11 Identities=9% Similarity=0.353 Sum_probs=4.6
Q ss_pred hHHHHHHHHHh
Q 048737 82 HTVQLWDIMVG 92 (274)
Q Consensus 82 ~a~~~~~~~~~ 92 (274)
.+.++++.+.+
T Consensus 35 s~~el~~~l~~ 45 (83)
T 2fu4_A 35 SAEDLYKRLID 45 (83)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 34444444433
No 362
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=37.35 E-value=48 Score=21.39 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=30.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHH
Q 048737 32 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQ 85 (274)
Q Consensus 32 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 85 (274)
|.-.|...+.+++.+-|.++++...+.| +...|.+++..|...=+++-+.+
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3345555566666666666666666554 55566666666665555555443
No 363
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=36.46 E-value=1.5e+02 Score=23.07 Aligned_cols=24 Identities=8% Similarity=-0.008 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHH
Q 048737 30 LAYETFLITLIRGKQVDEALKFLR 53 (274)
Q Consensus 30 ~~~~~li~~~~~~~~~~~a~~~~~ 53 (274)
..|-++..=|.+.+++++|++++.
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~ 59 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILA 59 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHH
Confidence 455666667777788888877664
No 364
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.85 E-value=98 Score=20.75 Aligned_cols=22 Identities=9% Similarity=-0.005 Sum_probs=10.0
Q ss_pred HHHHHHHhCCChhhHHHHHHHH
Q 048737 69 NALDILVKLNDSTHTVQLWDIM 90 (274)
Q Consensus 69 ~l~~~~~~~~~~~~a~~~~~~~ 90 (274)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 365
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=35.84 E-value=1.8e+02 Score=24.55 Aligned_cols=51 Identities=4% Similarity=-0.134 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHH
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEV 155 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 155 (274)
--.-++..|.+.|-.+.|.++++.+-..-+. +...| ..+..|.++|+++.+
T Consensus 518 d~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 518 DIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 3445556666666666666666665544222 33333 444555666665543
No 366
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=35.54 E-value=24 Score=24.17 Aligned_cols=27 Identities=7% Similarity=0.253 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHh
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVF 129 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (274)
....++.-|...++.++|...++++..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 356788889999999999999999863
No 367
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=35.24 E-value=27 Score=26.05 Aligned_cols=7 Identities=0% Similarity=0.126 Sum_probs=2.8
Q ss_pred HhcCChH
Q 048737 182 LDADEPE 188 (274)
Q Consensus 182 ~~~~~~~ 188 (274)
+..|+.+
T Consensus 198 ~~~~~~~ 204 (285)
T 3d9h_A 198 CENQQRA 204 (285)
T ss_dssp HHTTCHH
T ss_pred HHcCcHH
Confidence 3344443
No 368
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=35.02 E-value=1.4e+02 Score=22.93 Aligned_cols=96 Identities=11% Similarity=0.080 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccH---HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh-h
Q 048737 62 PTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNL---IMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS-L 137 (274)
Q Consensus 62 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 137 (274)
.|..-.+.|..+ +..|+.+.+..++ +.| ..++. .-++ .+...+..|+.+-+..++ +.|..++. .
T Consensus 16 ~d~~g~t~L~~A-a~~g~~~~v~~Ll----~~g--~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~ 83 (364)
T 3ljn_A 16 SDDENMEKIHVA-ARKGQTDEVRRLI----ETG--VSPTIQNRFGCT-ALHLACKFGCVDTAKYLA----SVGEVHSLWH 83 (364)
T ss_dssp CCHHHHHHHHHH-HHHTCHHHHHHHH----HTT--CCTTCCCTTCCC-HHHHHHHHCCHHHHHHHH----HHCCCCCCBT
T ss_pred cCCCCCCHHHHH-HHcCCHHHHHHHH----HcC--CCccccCCCCCc-HHHHHHHcCCHHHHHHHH----HCCCCccccC
Confidence 455555555444 4567765555444 445 33332 2233 344445556665444443 33433333 2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 048737 138 TYNMIFECLIKNKKVHEVENFFHEMIKNEWQPT 170 (274)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 170 (274)
-++ .+...+..|+.+-+..+++.....|..++
T Consensus 84 g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 84 GQK-PIHLAVMANKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp TBC-HHHHHHHTTCHHHHHHHHHHHHHHTCCHH
T ss_pred CCC-HHHHHHHcCCHHHHHHHHHhccccCCCHH
Confidence 223 33344566777777776666555454443
No 369
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=34.52 E-value=1.5e+02 Score=24.27 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=46.8
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh--------hhHH-HHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 102 IMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS--------LTYN-MIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~-~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
...|.+.+.|.+.++.+.+..++..+...+..|+. .+|. -+...+...+++.+|.+.+....+
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 34688889999999999999999998876653332 3443 344556678889999888877655
No 370
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=34.41 E-value=1.2e+02 Score=21.13 Aligned_cols=12 Identities=25% Similarity=0.127 Sum_probs=5.5
Q ss_pred HHHHhccCcHHH
Q 048737 36 LITLIRGKQVDE 47 (274)
Q Consensus 36 i~~~~~~~~~~~ 47 (274)
+...+..|+.+-
T Consensus 29 L~~A~~~g~~~~ 40 (223)
T 2f8y_A 29 LHLAARYSRSDA 40 (223)
T ss_dssp HHHHHHTTCHHH
T ss_pred HHHHHHcCCHHH
Confidence 334445555443
No 371
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=34.37 E-value=1e+02 Score=25.98 Aligned_cols=88 Identities=7% Similarity=-0.039 Sum_probs=44.7
Q ss_pred hHHHHHHHHHh--ccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 30 LAYETFLITLI--RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 30 ~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
..|..-|..+. ...+.+.......++..+=---+.....-++..|.+.|-.+.|.++++.+-..- -.+...+ ..
T Consensus 480 sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~---l~~g~~g-eA 555 (570)
T 3f3f_C 480 ELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQM---LSAHNII-ES 555 (570)
T ss_dssp TTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------
T ss_pred cchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH---HHCccHH-HH
Confidence 35665555555 345566677777777765222245667888999999999999999999988764 3445556 66
Q ss_pred HHHHHhcCChhhHH
Q 048737 108 VGLLCNNNDVDNVF 121 (274)
Q Consensus 108 ~~~~~~~~~~~~a~ 121 (274)
+..|+|+|+++.+.
T Consensus 556 L~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 556 IANFSRAGKYELVK 569 (570)
T ss_dssp --------------
T ss_pred HHHHHHcCChhhcc
Confidence 77889999887653
No 372
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=34.31 E-value=2.2e+02 Score=24.29 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=23.0
Q ss_pred CCCCchHhHHHHHHHHHhccCcHHHHHHHHHH
Q 048737 23 EWNPEHVLAYETFLITLIRGKQVDEALKFLRV 54 (274)
Q Consensus 23 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~ 54 (274)
..+|.|..+|...++-|...|....+.++++.
T Consensus 22 ~~~~~d~~~f~~~~~~~l~~g~~~~l~eilqD 53 (596)
T 4f52_E 22 DFKEEDFGLFQLAGQRCIEEGHTDQLLEIIQN 53 (596)
T ss_dssp -------CHHHHHHHHHHSSSCSHHHHHHHTT
T ss_pred CCChhHHHHHHHHHHHHcCcccHHHHHHHHhC
Confidence 55667889999999999999999999988865
No 373
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=34.17 E-value=42 Score=18.36 Aligned_cols=15 Identities=7% Similarity=0.324 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHhc
Q 048737 7 NVVEANKTFGEMVER 21 (274)
Q Consensus 7 ~~~~a~~~~~~~~~~ 21 (274)
+++.|...|.++...
T Consensus 35 d~~~A~~~F~~l~~~ 49 (59)
T 1oai_A 35 DYTRSAQAFTHLKAK 49 (59)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 677888888887765
No 374
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=33.89 E-value=92 Score=21.54 Aligned_cols=47 Identities=21% Similarity=0.094 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCHHHHHHHHHHHHhc
Q 048737 207 ASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNE 254 (274)
Q Consensus 207 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 254 (274)
..++.++..++.-.-+++++-.+.+....|. .+..+|..-++.+++.
T Consensus 112 ~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 112 DGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQ 158 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555553 3445555555544444
No 375
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1
Probab=33.68 E-value=1.1e+02 Score=20.70 Aligned_cols=107 Identities=7% Similarity=0.032 Sum_probs=58.5
Q ss_pred HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHH
Q 048737 152 VHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEE 231 (274)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 231 (274)
.+.|..+++.+...|-.|+....... ...+....+.++...+.... -...|+.++..+...|++..+ .+++.
T Consensus 51 ~~HA~~l~~~i~~~gG~~~l~~i~~p------~~~~~~~~e~l~~al~~E~~-~~~~~~~l~~~a~~~~D~~~~-~~l~~ 122 (167)
T 1krq_A 51 SDHAKKLITYLNETDSHVELQEVKQP------EQNFKSLLDVFEKTYEHEQF-ITKSINTLVEHMLTHKDYSTF-NFLQW 122 (167)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCCCCCC------CCCCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCHHHH-HHTHH
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCCC------CCCcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCChhHH-HHHHH
Confidence 46788888888877666643321110 12233344455544432211 224588888888777776544 34444
Q ss_pred HHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHH
Q 048737 232 MLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLER 267 (274)
Q Consensus 232 m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 267 (274)
+....+. ....+..++.-+.+.|.. +.-++++-+.
T Consensus 123 ~l~Eq~e-~~~~l~~~l~~l~~~g~~~~g~~~~D~~l~ 159 (167)
T 1krq_A 123 YVSEQHE-EEALFRGIVDKIKLIGEHGNGLYLADQYIK 159 (167)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCSTTTHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhCCCcchHhHHhHHHH
Confidence 5443222 344566667766666643 6666666443
No 376
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.52 E-value=1.3e+02 Score=21.28 Aligned_cols=38 Identities=5% Similarity=-0.021 Sum_probs=23.3
Q ss_pred hCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcC
Q 048737 76 KLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNN 115 (274)
Q Consensus 76 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (274)
+-.+.+.|.-.+-+|++.| -.|....-..++-+.-..|
T Consensus 19 RGSDpDAAly~LaRMl~~G--EDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAG--GDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhhcc
Confidence 4567777888888887777 4555444444444444444
No 377
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=32.12 E-value=1.2e+02 Score=21.74 Aligned_cols=87 Identities=2% Similarity=-0.005 Sum_probs=49.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhc---CCHhHHHHHHHHHHhCCCCC-------
Q 048737 107 VVGLLCNNNDVDNVFRFFDQMVFHGAFPDS-------LTYNMIFECLIKN---KKVHEVENFFHEMIKNEWQP------- 169 (274)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~------- 169 (274)
.+...++.|+.+....+++.+...|..++. .-.+.|..+ +.. |+.+-+..+++.-...+...
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 345566778888888888877777655443 334445444 344 77777777776654432111
Q ss_pred ---CcchHHHHHHHHHhcCChHHHHHHHH
Q 048737 170 ---TPLNCATAITMLLDADEPEFAIEIWN 195 (274)
Q Consensus 170 ---~~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (274)
|..-. +.+...+..|+.+-+..+++
T Consensus 84 ~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~ 111 (256)
T 2etb_A 84 TDEFYQGH-SALHIAIEKRSLQCVKLLVE 111 (256)
T ss_dssp CSTTTTTC-CHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccCC-CHHHHHHHcCCHHHHHHHHH
Confidence 11222 33444566777776555443
No 378
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=31.72 E-value=88 Score=18.96 Aligned_cols=47 Identities=13% Similarity=-0.089 Sum_probs=22.0
Q ss_pred CChHHHHHHHHHHHHCCCCccHHHHHHHHHHH-----HhcCCcchHHHHHHHHH
Q 048737 185 DEPEFAIEIWNYILENGILPLEASANVLLVGL-----RNLGRLSDVRRFAEEML 233 (274)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~m~ 233 (274)
|++-+|-++++..=.....|....|..+|... .+.|+. |..++.+..
T Consensus 15 g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~ 66 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAE 66 (94)
T ss_dssp TCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred CChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHH
Confidence 66666655555543333223444455554432 233444 555555443
No 379
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=31.52 E-value=2.2e+02 Score=23.54 Aligned_cols=66 Identities=14% Similarity=0.085 Sum_probs=49.0
Q ss_pred chHHHHHHHHHHHhccCCCCchHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 048737 7 NVVEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 76 (274)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (274)
.++.|...|...... .|.+...||.|.-.....|+.-+|+-.|-+.... ..|-+.+...|...+.+
T Consensus 167 ~~~~A~~~Y~~A~~~---~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 167 QTSQAESYYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALSK 232 (497)
T ss_dssp CHHHHHHHHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHHHH
Confidence 456788888887665 8888888999888888888887887777766655 35667777777766654
No 380
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=31.08 E-value=1.7e+02 Score=22.07 Aligned_cols=50 Identities=12% Similarity=0.006 Sum_probs=23.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCH
Q 048737 181 LLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLNRRILIYD 241 (274)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 241 (274)
.++.|+.+-+. .+.+.|..++..+ .+..-++.|+.+ +++-+++.|-.||.
T Consensus 280 A~~~g~~~iv~----~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 280 AVELKLKKIAE----LLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHTTCHHHHH----HHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHcCCHHHHH----HHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 34556655333 3345565555443 223334455543 45555666655543
No 381
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=30.94 E-value=1e+02 Score=19.48 Aligned_cols=76 Identities=8% Similarity=0.027 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHh-CCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 048737 117 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK-NEWQPTPLNCATAITMLLDADEPEFAIEIWN 195 (274)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (274)
+.+|+.-+++.... .+|......++..+... ++.++++.....+ .|+ .+.++...++...+.|-++.. +.|.
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~ 76 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWL 76 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHH
Confidence 44555555555433 33444444555544433 3445555544433 243 345555666666666655443 3444
Q ss_pred HHHH
Q 048737 196 YILE 199 (274)
Q Consensus 196 ~~~~ 199 (274)
.|..
T Consensus 77 ~m~~ 80 (119)
T 1wty_A 77 EMLE 80 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 382
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=29.65 E-value=1.2e+02 Score=19.65 Aligned_cols=22 Identities=9% Similarity=-0.005 Sum_probs=9.9
Q ss_pred HHHHHHHhCCChhhHHHHHHHH
Q 048737 69 NALDILVKLNDSTHTVQLWDIM 90 (274)
Q Consensus 69 ~l~~~~~~~~~~~~a~~~~~~~ 90 (274)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 383
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=29.43 E-value=85 Score=20.24 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHH
Q 048737 67 FSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRF 123 (274)
Q Consensus 67 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 123 (274)
|--.|...+.+++.+-|+.+++-.++.| +...|.+.+-.|...=+++-++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g-----~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE-----KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC-----SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----chHHHHHHHHHHHhccChHHHHHH
Confidence 3344555556666677777777666655 455566666666655555555544
No 384
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=29.34 E-value=1.1e+02 Score=21.56 Aligned_cols=26 Identities=8% Similarity=0.043 Sum_probs=18.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhc
Q 048737 32 YETFLITLIRGKQVDEALKFLRVMKG 57 (274)
Q Consensus 32 ~~~li~~~~~~~~~~~a~~~~~~~~~ 57 (274)
.-.+|.++.+.|++++|.+++.++..
T Consensus 35 kLqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 35 KLQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777788888888777776653
No 385
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=29.01 E-value=2.3e+02 Score=22.96 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=33.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcc-----hHHHHHHHHHhCCC
Q 048737 183 DADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLS-----DVRRFAEEMLNRRI 237 (274)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~a~~~~~~m~~~~~ 237 (274)
+.++.+.|..++.+|.+.|..|....-..+..+.-..|.-+ .|...++....-|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 34688888888888888887666555555555555555422 33444444455554
No 386
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=28.94 E-value=86 Score=24.90 Aligned_cols=10 Identities=0% Similarity=0.169 Sum_probs=4.7
Q ss_pred HHHHhcCChH
Q 048737 179 TMLLDADEPE 188 (274)
Q Consensus 179 ~~~~~~~~~~ 188 (274)
...+..|+.+
T Consensus 184 ~~A~~~~~~~ 193 (437)
T 1n11_A 184 HVAVHHNNLD 193 (437)
T ss_dssp HHHHHTTCHH
T ss_pred HHHHHcCCHH
Confidence 3344455554
No 387
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=27.39 E-value=3.5e+02 Score=24.44 Aligned_cols=125 Identities=10% Similarity=0.027 Sum_probs=0.0
Q ss_pred cHHhHHHHHHHHHhcCC---hhhHHHHHHHHHhc----CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcc
Q 048737 100 NLIMYNAVVGLLCNNND---VDNVFRFFDQMVFH----GAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPL 172 (274)
Q Consensus 100 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 172 (274)
+...-..++...|+.|. .+.|.+.|++.... .++||.......... |.-++-..+++...+ ..+..
T Consensus 679 ~~~lr~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~----g~~~~~~~l~~~y~~---~~~~~ 751 (897)
T 2xdt_A 679 ERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA----QSTEGWDFLYSKYQF---SLSST 751 (897)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT----TSHHHHHHHHHHHTT---CCCHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhhhEEEEec----CCHHHHHHHHHHHHc---cCCHH
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHH
Q 048737 173 NCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEE 231 (274)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 231 (274)
--..++.+++...+.....++++.....+..........+.....+.--.+.|++.+.+
T Consensus 752 ek~~ll~aL~c~~~~~~l~~~L~~~~~~~~i~~qd~~~~~~~v~~n~~g~~~~~~~~~~ 810 (897)
T 2xdt_A 752 EKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRK 810 (897)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHCSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHcChhhHHHHHHHHHH
No 388
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=25.96 E-value=82 Score=22.01 Aligned_cols=17 Identities=6% Similarity=-0.001 Sum_probs=9.8
Q ss_pred HHhccCcHHHHHHHHHH
Q 048737 38 TLIRGKQVDEALKFLRV 54 (274)
Q Consensus 38 ~~~~~~~~~~a~~~~~~ 54 (274)
..++.|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 8 QACMENEFFKVQELLHS 24 (228)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhc
Confidence 44556666666555554
No 389
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.88 E-value=3.7e+02 Score=24.29 Aligned_cols=159 Identities=11% Similarity=0.020 Sum_probs=88.4
Q ss_pred HHHHHHHhCCCh---hhHHHHHHHHHhcC--CccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 048737 69 NALDILVKLNDS---THTVQLWDIMVGIG--FNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIF 143 (274)
Q Consensus 69 ~l~~~~~~~~~~---~~a~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 143 (274)
.++...|..|.. +.|.+.|+.....+ ..++||.. ..+...-.+.|..++-..+++..... .+..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHH
Confidence 456666677754 56778888776542 12455532 33333344557766666777777664 3444556788
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCccHHHHHHHHHHHH
Q 048737 144 ECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILEN------GILPLEASANVLLVGLR 217 (274)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~ 217 (274)
.+++...+.+...++++............. ..++.+...+ ...-..+|+.+.+. ....+...+..++....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~-~~~~~~v~~n--~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRKQDA-TSTINSIASN--VIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCGGGH-HHHHHHHHHS--TTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCchhhH-HHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 888888888888888877665332122222 3334444432 22223333333331 12233346777887776
Q ss_pred hcCCcchHHHHHHHHHhC
Q 048737 218 NLGRLSDVRRFAEEMLNR 235 (274)
Q Consensus 218 ~~g~~~~a~~~~~~m~~~ 235 (274)
..-.-++-.+-++...+.
T Consensus 843 ~~~~t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 843 RRFSSEFELQQLEQFKKN 860 (909)
T ss_dssp TTCCSHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHHhh
Confidence 665555555555665544
No 390
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=25.53 E-value=1.7e+02 Score=20.16 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 048737 82 HTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAF 133 (274)
Q Consensus 82 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 133 (274)
....+++.+.+.| +-.|..--..++....+.|.+ ....+-.++...|+.
T Consensus 51 ~ie~vl~~L~~~g--~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 51 YISEIINKLIDLD--LINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 3445555555655 444444444444444443322 224455555566653
No 391
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Probab=25.35 E-value=1.7e+02 Score=20.27 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=5.2
Q ss_pred hHHHHHHHHHhc
Q 048737 30 LAYETFLITLIR 41 (274)
Q Consensus 30 ~~~~~li~~~~~ 41 (274)
..|..+...|.+
T Consensus 33 ~~Yl~~a~~~~~ 44 (183)
T 2cih_A 33 YVYLSMSYYFDR 44 (183)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHcc
Confidence 344444444443
No 392
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus}
Probab=25.28 E-value=1.7e+02 Score=20.26 Aligned_cols=19 Identities=11% Similarity=-0.008 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHhCCCCCCc
Q 048737 153 HEVENFFHEMIKNEWQPTP 171 (274)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~ 171 (274)
+.+..+.+++...|..|+.
T Consensus 75 ~had~laErI~~LGg~p~~ 93 (192)
T 2vxx_A 75 DHVHALGERLNGLGGVPVA 93 (192)
T ss_dssp HHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHcCCCCCC
Confidence 4455555555555555544
No 393
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=25.01 E-value=2.3e+02 Score=21.48 Aligned_cols=73 Identities=11% Similarity=0.037 Sum_probs=49.3
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHH---HhcCCcchHHHHHH
Q 048737 158 FFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGL---RNLGRLSDVRRFAE 230 (274)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~ 230 (274)
++..+.+.|+.|...++.-++..+...=.++.+.++|+.+...|...-..+.-+++..+ .-..++++...++.
T Consensus 176 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~ 251 (310)
T 3hzj_A 176 LHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFR 251 (310)
T ss_dssp HHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45556667888888888889988888778999999999999877532212222222211 12247778888775
No 394
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.85 E-value=1.2e+02 Score=18.41 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHH
Q 048737 30 LAYETFLITLIRGKQVDEALKFLRVM 55 (274)
Q Consensus 30 ~~~~~li~~~~~~~~~~~a~~~~~~~ 55 (274)
..+......+.+.|.+++|++.....
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 34556677888889999888766543
No 395
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=24.57 E-value=1.6e+02 Score=19.74 Aligned_cols=107 Identities=8% Similarity=0.008 Sum_probs=59.9
Q ss_pred HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHH
Q 048737 152 VHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEE 231 (274)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 231 (274)
.+.|.++++.+...|-.|+....... ...++...+.++...+.-. --...|+.++..+...|++..+ .+++.
T Consensus 51 ~~HA~~l~~~i~~~gg~~~l~~i~~p------~~~~~~~~e~l~~al~~E~-~~~~~~~~l~~~a~~~~D~~~~-~fl~~ 122 (165)
T 1eum_A 51 MTHMQRLFDYLTDTGNLPRINTVESP------FAEYSSLDELFQETYKHEQ-LITQKINELAHAAMTNQDYPTF-NFLQW 122 (165)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCBCCC------CCCCSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTCHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCCC------CCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCChhHH-HHHHH
Confidence 46788888888877666654321100 1122334444544443221 1224588888888887776544 34445
Q ss_pred HHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHH
Q 048737 232 MLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLER 267 (274)
Q Consensus 232 m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 267 (274)
+.+..+. .......++.-+.+.|.. +.-++++-+.
T Consensus 123 ~l~eq~e-~~~~l~~~l~~l~~~g~~~~g~~~~D~~l~ 159 (165)
T 1eum_A 123 YVSEQHE-EEKLFKSIIDKLSLAGKSGEGLYFIDKELS 159 (165)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHcCCCccchhHHhHHHH
Confidence 5544332 445566777777777753 6666666543
No 396
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=24.24 E-value=1.8e+02 Score=20.05 Aligned_cols=170 Identities=10% Similarity=-0.110 Sum_probs=101.4
Q ss_pred hHhHHHHHHHHHhccCcHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHH
Q 048737 28 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAV 107 (274)
Q Consensus 28 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 107 (274)
+...-...+..+.+.+.. .+...+.++.. .++...-...+.++.+.++.+.. ..+..+.. .++..+-...
T Consensus 32 ~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~-----~~~~~vr~~a 101 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK-----DEDGWVRQSA 101 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT-----CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc-----CCCHHHHHHH
Confidence 555566666677776664 34444444444 25666666777777777765444 33434433 3566677777
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCh
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEP 187 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (274)
+.+..+.++.+ +...+..+.. .++...-...+.++...++.+ +...+..+.+ .++...-...+.++.+.+..
T Consensus 102 ~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 173 (211)
T 3ltm_A 102 AVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE 173 (211)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch
Confidence 78888888754 4444555554 367777777788888887754 4555555554 46666777778888887764
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 048737 188 EFAIEIWNYILENGILPLEASANVLLVGLRNL 219 (274)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (274)
.+...+..+.+. ++..+-...+.++.+.
T Consensus 174 -~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 174 -RVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp -HHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred -hHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 455555555543 3334444444444433
No 397
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=24.23 E-value=26 Score=22.54 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=33.9
Q ss_pred ccCcHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHH---hCCChhhHHHHHHHHHhcC
Q 048737 41 RGKQVDEALKFLRVMKGENCF-PTLKFFSNALDILV---KLNDSTHTVQLWDIMVGIG 94 (274)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~ 94 (274)
....+++|.+.+..|++.-+. -.+..||..+..+- ..++. ..+|..+++.+
T Consensus 39 ~~~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~ 93 (120)
T 1q2z_A 39 ETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDG 93 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCC
Confidence 345788999999888764332 36788888887664 33444 56677777665
No 398
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.05 E-value=2.7e+02 Score=22.06 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=39.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcC----------------CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 048737 106 AVVGLLCNNNDVDNVFRFFDQMVFHG----------------AFPDSLTYNMIFECLIKNKKVHEVENFFHEMIK 164 (274)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (274)
.++.+.....+.++|.+.++++...- ..+-......+...|...++.++|..++++...
T Consensus 81 ~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~ 155 (393)
T 4b4t_O 81 YLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEK 155 (393)
T ss_dssp TTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34566677788888888888763321 011233445666777788888888888887753
No 399
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=24.04 E-value=1.4e+02 Score=21.95 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=45.9
Q ss_pred HHHhCCChhhHHHHHHHHH-hcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh---hhHHHHHHHHHh
Q 048737 73 ILVKLNDSTHTVQLWDIMV-GIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS---LTYNMIFECLIK 148 (274)
Q Consensus 73 ~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~ 148 (274)
..+..|+.+-+..+++.-. .. -..+..-++.+..+.........-.+++..+.+.|..++. .-.+.|.. .+.
T Consensus 117 ~A~~~g~~~~v~~Ll~~g~~~~---~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~-A~~ 192 (276)
T 4hbd_A 117 YSVSHANFPVVQQLLDSGVCKV---DKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALML-AVS 192 (276)
T ss_dssp HHHHTTCHHHHHHHHHTSCCCT---TCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHH-HHH
T ss_pred HHHHCCCHHHHHHHHHCCCCcC---CCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHH-HHH
Confidence 3345666655544444321 11 1223333344443333333333344445555554433322 12233333 345
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCcc---hHHHHHHHHHhcCChHHHHHHH
Q 048737 149 NKKVHEVENFFHEMIKNEWQPTPL---NCATAITMLLDADEPEFAIEIW 194 (274)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~ 194 (274)
.|+.+- .+.+.+.|..++.. -.+ -+...+..|+.+-+..++
T Consensus 193 ~g~~~~----v~~Ll~~gad~n~~d~~G~T-pLh~A~~~g~~~iv~~Ll 236 (276)
T 4hbd_A 193 HGRVDV----VKALLACEADVNVQDDDGST-ALMCACEHGHKEIAGLLL 236 (276)
T ss_dssp TTCHHH----HHHHHHTTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred cCCHHH----HHHHHhCCCCCCCCCCCCCC-HHHHHHHCCCHHHHHHHH
Confidence 565443 33344445444332 222 233344556655444443
No 400
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=23.70 E-value=1.6e+02 Score=19.45 Aligned_cols=47 Identities=4% Similarity=-0.019 Sum_probs=27.8
Q ss_pred HhHHHHHHHHHHh-CCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048737 152 VHEVENFFHEMIK-NEWQP---TPLNCATAITMLLDADEPEFAIEIWNYILE 199 (274)
Q Consensus 152 ~~~a~~~~~~~~~-~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (274)
++.++++.....+ .|..| ++.++.-+++...+.|-++.. +.|..|..
T Consensus 54 ~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~~ 104 (146)
T 1jog_A 54 YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYRD 104 (146)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHHH
Confidence 3455555555443 24433 366777777777777776655 45555554
No 401
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=23.42 E-value=3.2e+02 Score=22.64 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=54.5
Q ss_pred HHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 048737 72 DILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 148 (274)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 148 (274)
+...-...++.|...|.++.... |-+...||.|.-.....|+.-+|.-.|-+.... ..|-..+...+...+.+
T Consensus 160 DL~RY~~~~~~A~~~Y~~A~~~~---P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 160 DIARYRNQTSQAESYYRHAAQLV---PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhC---CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHHHH
Confidence 33444566789999999999875 667889999998888888888888777776655 34667777777666654
No 402
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=23.29 E-value=95 Score=21.47 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=27.0
Q ss_pred ccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 048737 99 PNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 149 (274)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 149 (274)
|....++.++..++...-.++++..+.+....|. .+..+|.--++.+++.
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQ 158 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 3444445555555555555666666666555553 3555555555555443
No 403
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=23.18 E-value=1.4e+02 Score=18.39 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=23.9
Q ss_pred cchHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 048737 222 LSDVRRFAEEMLNRRILIYDVTMQKLKKAFYNES 255 (274)
Q Consensus 222 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 255 (274)
.-.+.++.+++..-|+.|+..+...++..|...+
T Consensus 25 ~Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 25 SASAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3456667777777778777777777777776655
No 404
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=22.77 E-value=46 Score=23.37 Aligned_cols=172 Identities=9% Similarity=-0.062 Sum_probs=81.6
Q ss_pred HHHHHhCCChhhHHHHHHHHHhcCCccCccHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh------hhHHHHHH
Q 048737 71 LDILVKLNDSTHTVQLWDIMVGIGFNLMPNLIMYNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDS------LTYNMIFE 144 (274)
Q Consensus 71 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~ 144 (274)
+...+..|+.+.+..+++.-.... ...+..-++.| ...+..|+.+- ++.+.+.|..++. ..++.+..
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g~t~L-~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~g~t~L~~ 78 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLL--LQKDQDGRIPL-HWSVSFQAHEI----TSFLLSKMENVNLDDYPDDSGWTPFHI 78 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGT--TCCCTTSCCHH-HHHHHTTCHHH----HHHHHHTCTTCCGGGCCCTTSCCHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCcccc--ccCCCCCCCHH-HHHHHcCCHHH----HHHHHhccccccccccCCCCCCCHHHH
Confidence 455667888877766665433221 12333333333 34455566544 4444555522332 33344444
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC--CCCCcc--hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccH---HHHHHHHHHHH
Q 048737 145 CLIKNKKVHEVENFFHEMIKNE--WQPTPL--NCATAITMLLDADEPEFAIEIWNYILENGILPLE---ASANVLLVGLR 217 (274)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 217 (274)
+ +..|+.+ +++.+.+.| ..++.. .-.+.+...+..|+.+-+..++ +.|..++. ...+ .+...+
T Consensus 79 A-~~~~~~~----~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t-~L~~A~ 148 (228)
T 2dzn_A 79 A-CSVGNLE----VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI----ENGASVRIKDKFNQI-PLHRAA 148 (228)
T ss_dssp H-HHHCCHH----HHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH----HTTCCSCCCCTTSCC-HHHHHH
T ss_pred H-HHcCCHH----HHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHH----HcCCCccccCCCCCC-HHHHHH
Confidence 4 4556654 445555555 222221 1123344555677776555444 44554432 2222 333345
Q ss_pred hcCCcchHHHHHHHHHhCC-CccC---HHHHHHHHHHHHhcChhHHHHHHHHH
Q 048737 218 NLGRLSDVRRFAEEMLNRR-ILIY---DVTMQKLKKAFYNESRSMRDRFDSLE 266 (274)
Q Consensus 218 ~~g~~~~a~~~~~~m~~~~-~~~~---~~~~~~l~~~~~~~g~~a~~~~~~~~ 266 (274)
..|+.+ +++.+.+.| ..++ ..-.+ .+...+..|+. ++...++
T Consensus 149 ~~~~~~----~v~~Ll~~g~~~~~~~d~~g~t-~L~~A~~~~~~--~~v~~Ll 194 (228)
T 2dzn_A 149 SVGSLK----LIELLCGLGKSAVNWQDKQGWT-PLFHALAEGHG--DAAVLLV 194 (228)
T ss_dssp HTTCHH----HHHHHHTTTCCCSCCCCTTSCC-HHHHHHHTTCH--HHHHHHH
T ss_pred HcCCHH----HHHHHHhcCcccccCcCCCCCC-HHHHHHHcCCH--HHHHHHH
Confidence 566654 455555555 3332 22222 33444455666 5555555
No 405
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.56 E-value=1.6e+02 Score=18.81 Aligned_cols=41 Identities=7% Similarity=-0.096 Sum_probs=18.1
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 048737 194 WNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEEMLN 234 (274)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 234 (274)
|+.+....+.|++..--.-+......++++.|..+...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333334433333222223333455566666665555543
No 406
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=22.49 E-value=97 Score=18.13 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=20.9
Q ss_pred cCccHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 048737 97 LMPNLIMYNAVVGLLCNNNDVDNVFRFFDQM 127 (274)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (274)
++|++.||+-+.+++-+..-..++..+..++
T Consensus 32 LPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 32 IPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp CCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 6778888888777766665555555555544
No 407
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.35 E-value=2.7e+02 Score=21.51 Aligned_cols=29 Identities=3% Similarity=-0.054 Sum_probs=19.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 048737 103 MYNAVVGLLCNNNDVDNVFRFFDQMVFHG 131 (274)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 131 (274)
+...-|....+.+++..|-.+-+++++.+
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 44555666667777777777777777654
No 408
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=22.33 E-value=3e+02 Score=21.94 Aligned_cols=155 Identities=10% Similarity=0.028 Sum_probs=81.2
Q ss_pred HHHHHHHHhCCC---hhhHHHHHHHHHhcCC--ccCccHHh--HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHH
Q 048737 68 SNALDILVKLND---STHTVQLWDIMVGIGF--NLMPNLIM--YNAVVGLLCNNNDVDNVFRFFDQMVFHGAFPDSLTYN 140 (274)
Q Consensus 68 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~~--~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (274)
..++...|..|+ .+.|.+.|+.....+. .++||... |... .+ ..+.-..+++..... .+..--.
T Consensus 201 ~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~----~~--~~~~~~~l~~~y~~s---~~~~ek~ 271 (419)
T 3rjo_A 201 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVG----AQ--STEGWDFLYSKYQFS---LSSTEKS 271 (419)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHH----TT--SHHHHHHHHHHHHHC---CCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeee----eC--CHHHHHHHHHHHhcC---CCHHHHH
Confidence 455666667766 4677788888775432 25565432 2222 12 233334555555543 3555567
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc-CChHHHHHHHH----HHHHCCCCccHHHHHHHHHH
Q 048737 141 MIFECLIKNKKVHEVENFFHEMIKNEWQPTPLNCATAITMLLDA-DEPEFAIEIWN----YILENGILPLEASANVLLVG 215 (274)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~ 215 (274)
.++.+++...+.+...++++......+....... .++.+...+ -..+.|.+.+. .+.+. +.++...+..++..
T Consensus 272 ~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~-~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i~~ 349 (419)
T 3rjo_A 272 QIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFP-QILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMG 349 (419)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHH-HHHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHH-HHHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHHHH
Confidence 7888888888888888888887765532222333 334444433 23344444433 33332 12333566677766
Q ss_pred HHhcCCcchHHHHHHHHH
Q 048737 216 LRNLGRLSDVRRFAEEML 233 (274)
Q Consensus 216 ~~~~g~~~~a~~~~~~m~ 233 (274)
....-.-++-.+-++...
T Consensus 350 ~~~~~~t~~~l~e~~~Ff 367 (419)
T 3rjo_A 350 TTNQFSTRTRLEEVKGFF 367 (419)
T ss_dssp TTTTCCSHHHHHHHHHHH
T ss_pred HhhcCCCHHHHHHHHHHH
Confidence 554433333333333333
No 409
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ...
Probab=22.08 E-value=1.9e+02 Score=19.74 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=6.1
Q ss_pred HhHHHHHHHHHhc
Q 048737 29 VLAYETFLITLIR 41 (274)
Q Consensus 29 ~~~~~~li~~~~~ 41 (274)
...|..+...|..
T Consensus 27 s~~Yl~~a~~~~~ 39 (174)
T 2v2p_A 27 SYTYLSLGFYFDR 39 (174)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcc
Confidence 3345544444444
No 410
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.45 E-value=2e+02 Score=20.82 Aligned_cols=87 Identities=2% Similarity=0.016 Sum_probs=48.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCC-------ChhhHHHHHHHHH--hcCCHhHHHHHHHHHHhC---------CCC-
Q 048737 108 VGLLCNNNDVDNVFRFFDQMVFHGAFP-------DSLTYNMIFECLI--KNKKVHEVENFFHEMIKN---------EWQ- 168 (274)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~---------~~~- 168 (274)
+...++.|+.+.+..+++.....+... +..-++.|..++. +.|+.+-+..+++.-... +..
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~ 96 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTD 96 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccccc
Confidence 444566788888888888776655332 3344555655554 347777776666654321 111
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHH
Q 048737 169 PTPLNCATAITMLLDADEPEFAIEIWN 195 (274)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (274)
.|..-.+. +...+..|+.+-+..+++
T Consensus 97 ~d~~g~tp-L~~A~~~g~~~~v~~Ll~ 122 (273)
T 2pnn_A 97 SYYKGQTA-LHIAIERRNMTLVTLLVE 122 (273)
T ss_dssp TTTTTCCH-HHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCCH-HHHHHHcCCHHHHHHHHH
Confidence 12223333 444456778776555544
No 411
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1
Probab=21.19 E-value=1.6e+02 Score=18.97 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhcChh-HHHHHHHHH
Q 048737 242 VTMQKLKKAFYNESRS-MRDRFDSLE 266 (274)
Q Consensus 242 ~~~~~l~~~~~~~g~~-a~~~~~~~~ 266 (274)
..|+.++..+...|+. ...++..++
T Consensus 102 ~~~~~~~~~a~~~~D~~t~~~l~~~l 127 (142)
T 1ji5_A 102 VELKKGMEIAQNSDDEMTSDLLLGIY 127 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455555555555555 444444433
No 412
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A
Probab=20.69 E-value=2.1e+02 Score=19.58 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 048737 9 VEANKTFGEM 18 (274)
Q Consensus 9 ~~a~~~~~~~ 18 (274)
.+.++.+.+.
T Consensus 11 ~~v~~~LN~q 20 (176)
T 3ka8_A 11 SDCEAAVNRM 20 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 413
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A 3egm_A
Probab=20.55 E-value=2.1e+02 Score=19.59 Aligned_cols=107 Identities=8% Similarity=-0.015 Sum_probs=58.5
Q ss_pred HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCcchHHHHHHH
Q 048737 152 VHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENGILPLEASANVLLVGLRNLGRLSDVRRFAEE 231 (274)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 231 (274)
.+.|..+++.+...|-.|+....... ...+....+.++...+.-. --...|..++..+...|++..+ .+++.
T Consensus 65 ~~HA~~l~e~i~~lGG~p~l~~i~~p------~~~~~~~~e~le~aL~~E~-~~~~~~~~l~~~A~~~~D~~t~-~~l~~ 136 (181)
T 3bvf_A 65 YEHAKKLIIFLNENNVPVQLTSISAP------EHKFEGLTQIFQKAYEHEQ-HISESINNIVDHAIKSKDHATF-NFLQW 136 (181)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCBCCC------CCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTCHHHH-HHTHH
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCCC------CCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCHhHH-HHHHH
Confidence 46788888888887766653321110 1222334444444443211 1345788888887777776543 34444
Q ss_pred HHhCCCccCHHHHHHHHHHHHhcChh--HHHHHHHHHH
Q 048737 232 MLNRRILIYDVTMQKLKKAFYNESRS--MRDRFDSLER 267 (274)
Q Consensus 232 m~~~~~~~~~~~~~~l~~~~~~~g~~--a~~~~~~~~~ 267 (274)
+.+..+. ....+..++.-+.+.|.. +.-+|++-+.
T Consensus 137 ~l~eqvE-e~~~l~~~l~~l~~~g~~~~g~~~~D~~l~ 173 (181)
T 3bvf_A 137 YVAEQHE-EEVLFKDILDKIELIGNENHGLYLADQYVK 173 (181)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhCCCcchHhHHhHHHH
Confidence 5433222 122466777777776643 6666666443
No 414
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=20.43 E-value=2.1e+02 Score=19.47 Aligned_cols=15 Identities=7% Similarity=-0.119 Sum_probs=6.8
Q ss_pred HhHHHHHHHHHhccC
Q 048737 29 VLAYETFLITLIRGK 43 (274)
Q Consensus 29 ~~~~~~li~~~~~~~ 43 (274)
...|..+...|...|
T Consensus 23 s~~Yl~~a~~~~~~~ 37 (173)
T 1s3q_A 23 AYLYLSMASYFDSIG 37 (173)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHcC
Confidence 334554444444443
No 415
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=20.27 E-value=3.3e+02 Score=21.58 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHhcCC--HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048737 136 SLTYNMIFECLIKNKK--VHEVENFFHEMIKNEWQPTPLNCATAITMLLDADEPEFAIEIWNYILENG 201 (274)
Q Consensus 136 ~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (274)
..+|..++..+..-.+ .+++..+++.+.+.. .++...=..|+-.+.+--..++...+.+.|.+.+
T Consensus 23 ~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~-~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~ 89 (377)
T 3r88_A 23 VPSWPQILGRLTDNRDLARGQAAWAMDQIMTGN-ARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHA 89 (377)
T ss_dssp -CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhC
Confidence 3456666666554443 345666666655433 2333333333333444445555555555555543
No 416
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.23 E-value=2.4e+02 Score=23.09 Aligned_cols=63 Identities=10% Similarity=0.005 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcc--------hHH-HHHHHHHhcCChHHHHHHHHHHHHC
Q 048737 138 TYNMIFECLIKNKKVHEVENFFHEMIKNEWQPTPL--------NCA-TAITMLLDADEPEFAIEIWNYILEN 200 (274)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (274)
..+.++..|.+.+++.-+..+++.+...+..|+.. +|. .+.+.+...+++.+|.+-+......
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 45788899999999999999999998766533322 332 3455667788998888877766553
Done!