Query 048738
Match_columns 355
No_of_seqs 293 out of 1580
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 12:35:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0656 G1/S-specific cyclin D 100.0 3E-48 6.4E-53 371.5 19.0 221 51-282 43-268 (335)
2 KOG0655 G1/S-specific cyclin E 100.0 8.2E-36 1.8E-40 279.6 14.0 215 51-288 111-335 (408)
3 COG5024 Cyclin [Cell division 100.0 1.7E-35 3.6E-40 293.0 12.7 250 44-315 173-430 (440)
4 KOG0653 Cyclin B and related k 100.0 1E-34 2.2E-39 288.6 15.0 218 49-288 123-345 (391)
5 KOG0654 G2/Mitotic-specific cy 100.0 1.8E-30 3.9E-35 251.1 7.0 224 46-288 96-323 (359)
6 PF00134 Cyclin_N: Cyclin, N-t 99.9 4.1E-24 9E-29 179.1 8.5 126 55-194 1-127 (127)
7 TIGR00569 ccl1 cyclin ccl1. Un 99.8 2.7E-19 5.8E-24 172.0 13.0 159 85-256 54-222 (305)
8 KOG0835 Cyclin L [General func 99.6 2E-15 4.4E-20 142.7 13.6 190 84-287 20-229 (367)
9 KOG0834 CDK9 kinase-activating 99.6 7.9E-15 1.7E-19 141.4 10.8 190 84-287 36-245 (323)
10 COG5333 CCL1 Cdk activating ki 99.5 3.3E-13 7.1E-18 127.6 10.7 162 84-257 42-209 (297)
11 PF02984 Cyclin_C: Cyclin, C-t 99.4 7.7E-13 1.7E-17 108.8 7.6 88 196-290 1-91 (118)
12 KOG0794 CDK8 kinase-activating 99.3 3.3E-12 7.2E-17 115.9 8.5 187 85-287 39-237 (264)
13 cd00043 CYCLIN Cyclin box fold 99.3 2.1E-12 4.5E-17 99.6 4.3 86 87-186 2-88 (88)
14 smart00385 CYCLIN domain prese 99.2 1.2E-11 2.7E-16 94.3 4.1 82 92-187 1-83 (83)
15 PRK00423 tfb transcription ini 98.9 8.6E-08 1.9E-12 93.1 18.1 179 88-288 123-304 (310)
16 KOG2496 Cdk activating kinase 98.8 8E-09 1.7E-13 97.5 7.3 150 93-253 62-221 (325)
17 PF08613 Cyclin: Cyclin; Inte 97.9 1.6E-05 3.4E-10 69.2 5.2 93 90-193 54-149 (149)
18 cd00043 CYCLIN Cyclin box fold 97.5 0.00097 2.1E-08 50.6 9.7 84 195-284 2-87 (88)
19 smart00385 CYCLIN domain prese 97.5 0.00071 1.5E-08 50.9 8.3 80 200-285 1-82 (83)
20 COG1405 SUA7 Transcription ini 97.4 0.0081 1.7E-07 57.8 15.8 175 89-285 99-276 (285)
21 KOG1597 Transcription initiati 97.0 0.012 2.6E-07 56.1 12.8 173 94-288 111-288 (308)
22 KOG4164 Cyclin ik3-1/CABLES [C 96.9 0.00025 5.5E-09 69.4 0.8 95 90-196 385-482 (497)
23 KOG1598 Transcription initiati 89.7 0.99 2.1E-05 46.6 7.1 169 69-255 44-224 (521)
24 KOG1674 Cyclin [General functi 89.0 0.63 1.4E-05 43.1 4.8 87 104-196 89-181 (218)
25 KOG0834 CDK9 kinase-activating 60.0 14 0.00031 36.3 4.7 52 138-189 193-245 (323)
26 PF00382 TFIIB: Transcription 59.1 9.2 0.0002 28.4 2.6 57 96-164 3-60 (71)
27 PF00382 TFIIB: Transcription 50.4 68 0.0015 23.6 6.2 32 225-256 21-53 (71)
28 PRK00423 tfb transcription ini 46.6 1.6E+02 0.0034 28.6 9.7 85 198-288 125-210 (310)
29 KOG1675 Predicted cyclin [Gene 39.3 23 0.00049 34.5 2.4 88 110-206 210-298 (343)
30 KOG1597 Transcription initiati 38.1 62 0.0013 31.4 5.1 57 229-288 135-192 (308)
31 COG1405 SUA7 Transcription ini 31.5 3.9E+02 0.0085 25.8 9.5 101 182-288 76-185 (285)
32 PF02984 Cyclin_C: Cyclin, C-t 29.2 69 0.0015 25.2 3.5 48 140-190 43-90 (118)
33 PF09080 K-cyclin_vir_C: K cyc 23.5 3.2E+02 0.007 21.7 6.0 33 225-257 33-66 (106)
34 KOG3932 CDK5 kinase activator 23.5 38 0.00082 32.6 1.0 113 88-208 223-341 (357)
35 PF03261 CDK5_activator: Cycli 21.3 93 0.002 30.8 3.2 111 88-207 222-338 (346)
No 1
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3e-48 Score=371.48 Aligned_cols=221 Identities=29% Similarity=0.423 Sum_probs=193.0
Q ss_pred cCHHHHHHHHHHHhhccCCCCCccccccCCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhccccccc
Q 048738 51 EECEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVL 129 (355)
Q Consensus 51 e~~~e~l~~l~e~E~~~~p~~~yl~~~~q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~ 129 (355)
-+.++++..|+++|.+|.|+.+|...+ |..+++.+|.++++||++|+++ +++.++|++| ||||||||+..
T Consensus 43 ~~~e~~i~~ll~kEe~~~p~~~~~~~~-~~~~~~~~R~~A~~WIl~V~~~---~~~~~~~~~LA~NYlDRFls~~----- 113 (335)
T KOG0656|consen 43 LWDERVLANLLEKEEQHNPSLDYFLCV-QKLILSSMRKQALDWILKVCEE---YNFEPLVFLLAMNYLDRFLSSQ----- 113 (335)
T ss_pred cccHHHHHHHHHHHHHhCCCCchhhhc-ccccccHHHHHHHHHHHHHHHH---hCCchHHHHHHHHHHHHhhccc-----
Confidence 357899999999999999999987777 8889999999999999999999 6889999999 99999999999
Q ss_pred CCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhc
Q 048738 130 SPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNF 209 (355)
Q Consensus 130 ~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~ 209 (355)
.++++++|++||+|+|||+||||+||+.+|.+.|++|..+++.|.+++|+|||+.||++|+|||+++||++|+++|++++
T Consensus 114 ~l~k~k~W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~feaktI~rmELLVLstL~Wrl~aVTP~sF~~~fl~ki 193 (335)
T KOG0656|consen 114 KLPKDKPWMLQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFEAKTIQRMELLVLSTLKWRLRAVTPFSFIDHFLSKI 193 (335)
T ss_pred ccCCCchHHHHHHHHHHHHHHHhhcCcCCchhhhhhhccccccccHHHHHHHHHHHHhhccccccCCCchHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHH---HHHHHcccccccCCCHHHHHHHHHHHHHHhhcCC-ChhHHHHHhcccCcCChhhHHHHHH
Q 048738 210 DSLEFHLHNELTTL---HINQTNADARLLKYQPSVVAVSALWCSLDELTAS-SCAHVAFITRLFNQEQKDDVVRCNM 282 (355)
Q Consensus 210 ~~~~~~~~~~~~~~---~ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~~~-w~~~l~~~s~~~~~~~~e~v~~C~~ 282 (355)
+... +....++.. .++.+..|..|++|+||+||+|++..+...+.+. +.........+. .+.++.+..|+.
T Consensus 194 ~~~~-~~~~~~~~~~s~~ll~~~~d~~Fl~y~pSviAaa~~~~v~~~~~~l~~~~~~~~~~~~~-~l~~e~~~~~~~ 268 (335)
T KOG0656|consen 194 SQKD-HNKHLFLKHASLFLLSVITDIKFLEYPPSVIAAAAILSVSASVDGLDFREYENNLLSLL-SLSKEKVNRCYD 268 (335)
T ss_pred Cccc-chHHHHHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHhhcchhhhhhhHHHHHHH-HhhHHhhhcchh
Confidence 8543 233333322 2678999999999999999999999888877655 322122233333 256888999998
No 2
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.2e-36 Score=279.61 Aligned_cols=215 Identities=21% Similarity=0.285 Sum_probs=183.1
Q ss_pred cCHHHHHHHHHHHhhccCCCCCccccccCCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhccccccc
Q 048738 51 EECEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVL 129 (355)
Q Consensus 51 e~~~e~l~~l~e~E~~~~p~~~yl~~~~q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~ 129 (355)
....|++..|+.+|..|.-...+++. +++..+.||++++|||++||+. ++|.+||+|| |.||||||....
T Consensus 111 gn~~eVW~lM~kkee~~l~~~~~l~q--Hpdlqp~mRaILlDWlmEVCEv---ykLHRETFyLAvDy~DRyl~t~~---- 181 (408)
T KOG0655|consen 111 GNSKEVWLLMLKKEERYLRDKHFLEQ--HPDLQPQMRAILLDWLMEVCEV---YKLHRETFYLAVDYFDRYLETQV---- 181 (408)
T ss_pred cCHHHHHHHHHccchhhhhhhHHHhh--CCCCCHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHH----
Confidence 35789999999999999887877776 7999999999999999999999 5788999999 999999997762
Q ss_pred CCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhc
Q 048738 130 SPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNF 209 (355)
Q Consensus 130 ~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~ 209 (355)
.+.+ .++||+|+||||||||+||+++|.+.+| .+.+++.++.++|++||+.||++|+|++.+.|...+|..|+...
T Consensus 182 ~v~k---t~lQLIGitsLFIAAK~EEIYpPKl~eF-AyvTDgAcs~ddIltmE~iilkal~W~l~PiTii~WL~vylQv~ 257 (408)
T KOG0655|consen 182 EVSK---TNLQLIGITSLFIAAKLEEIYPPKLIEF-AYVTDGACSEDDILTMELIILKALKWELSPITIISWLNVYLQVD 257 (408)
T ss_pred Hhhh---hhHHHhhHHHHHHHHHHhhccCccccce-eeeccCccchHHHHHHHHHHHHHhcccccceehHHHHHHHHHHH
Confidence 4543 4999999999999999999999999999 68899999999999999999999999999999999999999876
Q ss_pred CCcch-------hhHHHHHHH-H-HHHHcccccccCCCHHHHHHHHHHHHHHhhcCCChhHHHHHhcccCcCChhhHHHH
Q 048738 210 DSLEF-------HLHNELTTL-H-INQTNADARLLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDDVVRC 280 (355)
Q Consensus 210 ~~~~~-------~~~~~~~~~-~-ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~~~w~~~l~~~s~~~~~~~~e~v~~C 280 (355)
..++. ..+.+|+.- . +.++++|.+.+.|.-++|||||++.-... ......+|| .+..|.+|
T Consensus 258 ~~n~~~k~l~Pq~~~~efiqiaqlLDlc~ldids~~fsYrilaAAal~h~~s~------e~v~kaSG~----~w~~ie~c 327 (408)
T KOG0655|consen 258 ALNDAPKVLLPQYSQEEFIQIAQLLDLCILDIDSLEFSYRILAAAALCHFTSI------EVVKKASGL----EWDSIEEC 327 (408)
T ss_pred hcCCCCceeccccchHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhHH------HHHHHcccc----cHHHHHHH
Confidence 54331 234445432 2 45899999999999999999999876652 123456777 47889999
Q ss_pred HHHHHHhh
Q 048738 281 NMIMKSRL 288 (355)
Q Consensus 281 ~~~m~~~~ 288 (355)
++.|+-..
T Consensus 328 v~wm~Pf~ 335 (408)
T KOG0655|consen 328 VDWMVPFV 335 (408)
T ss_pred HHHHHHHH
Confidence 99998654
No 3
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.7e-35 Score=293.02 Aligned_cols=250 Identities=21% Similarity=0.230 Sum_probs=210.0
Q ss_pred CcccccccCHHHHHHHHHHHhhccCCCCCccccccCCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchh
Q 048738 44 TSFYKTKEECEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKS 122 (355)
Q Consensus 44 ~~f~~~~e~~~e~l~~l~e~E~~~~p~~~yl~~~~q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs 122 (355)
+.++ +.||..+|+++|+++|..++|.++|+.+ |+.....||.++|+|+++||.. |++.++|+++ ||++||||+
T Consensus 173 d~~m-v~Ey~~~Ife~l~k~e~~~lp~~~yl~k--q~~~~~~mR~~Lv~wlvevH~~---F~llpeTL~lainiiDrfLs 246 (440)
T COG5024 173 DPLM-VPEYASDIFEYLLKLELIDLPNPNYLIK--QSLYEWSMRSILVDWLVEVHGK---FGLLPETLFLAINIIDRFLS 246 (440)
T ss_pred Cccc-hHHHHHHHHHHHHHHHHHhcCcHHHHhh--cchhHHhHHHHHHHHHHHhccc---ccccchHHHHHHHHHHHHhc
Confidence 3443 8899999999999999999999999877 7888889999999999999999 8999999999 999999999
Q ss_pred cccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHH
Q 048738 123 VYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYV 202 (355)
Q Consensus 123 ~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL 202 (355)
.. .++- .++||+|++|||||+||||++.|.+.+| +..+++.|+.++|++||+.+|.+|+|++..|+|..||
T Consensus 247 ~~-----~v~l---~k~QLvg~s~LfIa~K~EE~~~p~i~~l-~~~t~g~~t~~~i~~aE~~ml~~l~f~is~P~P~sFL 317 (440)
T COG5024 247 SR-----VVSL---EKYQLVGISALFIASKYEEVNCPSIKDL-VYATDGAFTRDDIIRAERYMLEVLDFNISWPSPMSFL 317 (440)
T ss_pred cC-----cccH---HHHHHHHHHHHHHHHhHhHhcCHHHHHH-HHHHcccccHHHHHHHHHHHhhhcccccCCCChHHHH
Confidence 99 4433 3899999999999999999999999999 6789999999999999999999999999999999998
Q ss_pred HHHHHhcCCcchhhHHHHHHHHH-HHHcccccccCCCHHHHHHHHHHHHHHhhcCC-ChhHHHHHhc-ccCcCChhhHHH
Q 048738 203 ELLLTNFDSLEFHLHNELTTLHI-NQTNADARLLKYQPSVVAVSALWCSLDELTAS-SCAHVAFITR-LFNQEQKDDVVR 279 (355)
Q Consensus 203 ~~fl~~~~~~~~~~~~~~~~~~l-l~sl~d~~fl~~~PS~IAaAal~~a~~~l~~~-w~~~l~~~s~-~~~~~~~e~v~~ 279 (355)
+++.+.-+.. ........|+ ..+..++.|+.++||.+||||++.++..++.. |+..+.+++| |. ++++..
T Consensus 318 RriSka~dyd---~~srt~~k~~~e~s~~~~~f~~~~~S~~~aaa~~~s~~~~~~~~w~~~l~~ySg~y~----~~~l~~ 390 (440)
T COG5024 318 RRISKASDYD---IFSRTPAKFSSEISPVDYKFIQISPSWCAAAAMYLSRKILSQNQWDRTLIHYSGNYT----NPDLKP 390 (440)
T ss_pred HHHHhhcccc---hhhhhhHhhhCCchHhhhhhccCCchHHHHHHHHHHHhhhccCCCCccccccCCCCC----chhHHH
Confidence 8887664321 1111233454 48999999999999999999999999988765 9988888888 75 448999
Q ss_pred HHHHHHHhhhCCCccccccCCCCCCC----CCCccccccc
Q 048738 280 CNMIMKSRLVDPLSNLIVCGQPYSNW----PSSPVTVLLR 315 (355)
Q Consensus 280 C~~~m~~~~~~~~~~~~~~~~~~~~~----p~spv~Vl~~ 315 (355)
+.+.+.+.+.+|........+||+.+ -++|++-..+
T Consensus 391 ~~~~~~~~l~~~~~~~~~i~~Ky~~~~~~~~s~~~~ew~~ 430 (440)
T COG5024 391 LNESNKENLQNPSVHHDAIFPKYPSPTFGKASSPTGEWIR 430 (440)
T ss_pred HHHHHHHHhcccchhhhhhhhccccccccccchHHHHHHh
Confidence 99999999888765544444566432 2456665544
No 4
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1e-34 Score=288.58 Aligned_cols=218 Identities=21% Similarity=0.229 Sum_probs=189.1
Q ss_pred cccCHHHHHHHHHHHhhccCCCCCccccccCCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhccccc
Q 048738 49 TKEECEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTC 127 (355)
Q Consensus 49 ~~e~~~e~l~~l~e~E~~~~p~~~yl~~~~q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~ 127 (355)
..+|.++++.++.++|..+.|...+ .. |.+++..||.++|||+++||.. |++.+||+|+ ||++||||++.
T Consensus 123 ~~ey~~di~~~l~~~e~~~~p~~~~-~~--~~e~~~~mR~iLvdwlvevh~~---F~L~~ETL~LaVnliDRfL~~~--- 193 (391)
T KOG0653|consen 123 IVEYVQDIFEYLRQLELEFLPLSYD-IS--QSEIRAKMRAILVDWLVEVHEK---FGLSPETLYLAVNLIDRFLSKV--- 193 (391)
T ss_pred HHHHHHHHHHHHHHHHHhhCchhhh-cc--cccccHHHHHHHHHHHHHhhhh---cCcCHHHHHHHHHHHHHHHHHh---
Confidence 5789999999999999877776655 33 7899999999999999999999 8999999999 99999999998
Q ss_pred ccCCccccchhhhhhHHhhHH-HhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHH
Q 048738 128 VLSPAEWKYWMVELVSVACLS-IASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLL 206 (355)
Q Consensus 128 ~~~~~~~k~~~lQLlavaCL~-IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl 206 (355)
.++. .++||+|++||+ ||+|+||..+|.+.|+ +..+++.|++++|++||+.||++|+|++..|||+.||++|+
T Consensus 194 --~v~~---~~lqLvgvsalf~IA~K~EE~~~P~v~dl-v~isd~~~s~~~il~mE~~il~~L~f~l~~p~~~~FLrr~~ 267 (391)
T KOG0653|consen 194 --KVPL---KKLQLVGVSALLSIACKYEEISLPSVEDL-VLITDGAYSREEILRMEKYILNVLEFDLSVPTPLSFLRRFL 267 (391)
T ss_pred --cccH---HHhhHHhHHHHHHHHHhhhhccCCcccee-EeeeCCccchHHHHHHHHHHHhccCeeecCCchHHHHHHHH
Confidence 5543 499999999966 9999999999999999 88999999999999999999999999999999999999999
Q ss_pred HhcCCcchhhHHHHHHHH-HHHHcccccccCCCHHHHHHHHHHHHHHhhcC--CChhHHHHHhcccCcCChhhHHHHHHH
Q 048738 207 TNFDSLEFHLHNELTTLH-INQTNADARLLKYQPSVVAVSALWCSLDELTA--SSCAHVAFITRLFNQEQKDDVVRCNMI 283 (355)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~-ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~~--~w~~~l~~~s~~~~~~~~e~v~~C~~~ 283 (355)
+....+ .....+..+ ++.+++|+.++.++||.+|||++++++..... .|..++.+++||.. ..+..|.+.
T Consensus 268 ka~~~d---~~~~~~~k~~~El~l~d~~~~~~~~s~~aaa~~~~~~~~~~~~~~w~~~~~~~sg~~~----~~~~~~~~~ 340 (391)
T KOG0653|consen 268 KAADYD---IKTRTLVKYLLELSLCDYSMLSIPPSSSAAASFTLALRMLSKGDVWSPTLEHYSGYSE----SYLFECARS 340 (391)
T ss_pred Hhhhcc---hhHHHHHHHHHHHHHhhhHHhccCcHHHHHHHHHHHHHHhccCCccCCCCeeccCCCc----HHHHHHHHH
Confidence 887622 222334445 56999999999999999999999999997543 39998999999973 267888887
Q ss_pred HHHhh
Q 048738 284 MKSRL 288 (355)
Q Consensus 284 m~~~~ 288 (355)
+..+.
T Consensus 341 ~~~~~ 345 (391)
T KOG0653|consen 341 LSALS 345 (391)
T ss_pred HHHHH
Confidence 77744
No 5
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.8e-30 Score=251.10 Aligned_cols=224 Identities=21% Similarity=0.243 Sum_probs=201.1
Q ss_pred ccccccCHHHHHHHHHHHhhc-cCCCCCccccccCCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhc
Q 048738 46 FYKTKEECEEAAIICLEKELS-YMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSV 123 (355)
Q Consensus 46 f~~~~e~~~e~l~~l~e~E~~-~~p~~~yl~~~~q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~ 123 (355)
-++...|..++..++..-|.. ++|.++|++.+ |.++++.||.++|||+++|.+. .++..+|+|+ +++.|||++.
T Consensus 96 p~~c~~~~~~I~~~~r~~ei~~~rp~~~~~e~v-q~d~t~smrgilvdwlvevsee---~r~~~e~l~ls~~~~drfl~~ 171 (359)
T KOG0654|consen 96 PQMCLKIAAKIYNTLRVSDIKSERPLPSKFEFV-QADITPSMRGILVDWLVEVSEE---YRLTFETLYLSVNYRDRFLSY 171 (359)
T ss_pred hHHHHHHHHHHhhcccccchhhccCcccceeee-ecCCCcchhhhhhhhhhHHHHH---HHhhhhheeecHHHHHHHhcc
Confidence 334567888899999999988 99999999999 9999999999999999999999 5678899999 9999999999
Q ss_pred ccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHH
Q 048738 124 YVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVE 203 (355)
Q Consensus 124 ~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~ 203 (355)
. .+.+ .++|++|++|++||+|+||..+|.+.+| +..+++.|+..++.+||..||+.|.+.+..||.-.|+.
T Consensus 172 ~-----~~~~---~k~ql~g~s~m~I~sk~ee~~~~~~~ef-~~itd~ty~~~qv~~~~~~il~~l~~~~~~pt~~~~l~ 242 (359)
T KOG0654|consen 172 K-----EVNK---QKLQLVGISAMLIASKYEEIKEPRVEEF-CYITDNTYTYWQVLRMEIDILNALTFELVRPTSKTFLR 242 (359)
T ss_pred C-----ccHH---HHHHHhCcccceeeccchhhcchHHHHH-HhhhhhhhHHHHHHHHHHHHHHHhHHHHhCchHHHHHH
Confidence 9 5543 4899999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred HHHHhcCCcchhhHHHHHHHHH-HHHcccccccCCCHHHHHHHHHHHHHHhhcCC-ChhHHHHHhcccCcCChhhHHHHH
Q 048738 204 LLLTNFDSLEFHLHNELTTLHI-NQTNADARLLKYQPSVVAVSALWCSLDELTAS-SCAHVAFITRLFNQEQKDDVVRCN 281 (355)
Q Consensus 204 ~fl~~~~~~~~~~~~~~~~~~l-l~sl~d~~fl~~~PS~IAaAal~~a~~~l~~~-w~~~l~~~s~~~~~~~~e~v~~C~ 281 (355)
.|+..... .....+.+..|+ ++++.++.|+.|.||+|||||+++|+..++.. |+..|.++++|. -+++..|.
T Consensus 243 ~~~~~~~~--~~~~~e~~~~yl~elsll~~~~l~y~PSliAasAv~lA~~~~~~~pW~~~L~~~T~y~----~edl~~~v 316 (359)
T KOG0654|consen 243 RFLRVAQT--PELQVEPLANYLTELSLLDYIFLKYLPSLIAASAVFLARLTLDFHPWNQTLEDYTGYK----AEDLKPCV 316 (359)
T ss_pred HHHHhhcc--hhHHHHHHHHHHHHhhhhhHHHhccChHHHHHHHHHHHHhhccCCCCchhhHHhhccc----HHHHHHHH
Confidence 99887643 445566677775 59999999999999999999999999988744 999999999996 68999999
Q ss_pred HHHHHhh
Q 048738 282 MIMKSRL 288 (355)
Q Consensus 282 ~~m~~~~ 288 (355)
..|..++
T Consensus 317 ~~L~~~l 323 (359)
T KOG0654|consen 317 LDLHLYL 323 (359)
T ss_pred HHHhccc
Confidence 9998433
No 6
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=99.90 E-value=4.1e-24 Score=179.15 Aligned_cols=126 Identities=29% Similarity=0.450 Sum_probs=110.9
Q ss_pred HHHHHHHHHhhccCCCCCccccccCCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCcc
Q 048738 55 EAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAE 133 (355)
Q Consensus 55 e~l~~l~e~E~~~~p~~~yl~~~~q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~ 133 (355)
|++..|+++|.++.|++.|++. +++++...|..+++||.+++.. ++++++|++. ++|||||+... .+.+
T Consensus 1 ~i~~~~~~~e~~~~~~~~~~~~--~~~~~~~~r~~~~~~i~~~~~~---~~l~~~~~~~A~~~~dr~~~~~-----~~~~ 70 (127)
T PF00134_consen 1 DIFRYLLEKELKYKPNPDYLEQ--QPEITPEMRQIIIDWIIELCQR---LKLSPETLHLAIYLFDRFLSKR-----PVNR 70 (127)
T ss_dssp HHHHHHHHHHHHTTCCTTHGTG--TSSHHHHHHHHHHHHHHHHHHH---TT-BHHHHHHHHHHHHHHHTTS------TTC
T ss_pred CHHHHHHHHHHHHCcCcccccc--ChhcCHHHHHHHHHHHHHHHHh---cccchhHHHHHHHHHHHHHhhc-----cccc
Confidence 6899999999999999999997 5688899999999999999999 8999999999 99999999999 5543
Q ss_pred ccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCccc
Q 048738 134 WKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLG 194 (355)
Q Consensus 134 ~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~ 194 (355)
..++++|+|||+||+|++|..+|.+.++ +..+++.|++++|.+||+.||++|+|+++
T Consensus 71 ---~~~~li~~~cl~lA~K~~e~~~~~~~~~-~~~~~~~~~~~~i~~~E~~iL~~L~f~ln 127 (127)
T PF00134_consen 71 ---SKLQLIALACLFLASKMEEDNPPSISDL-IRISDNTFTKKDILEMEREILSALNFDLN 127 (127)
T ss_dssp ---CGHHHHHHHHHHHHHHHHTSS--HHHHH-HHHTTTSSHHHHHHHHHHHHHHHTTT---
T ss_pred ---chhhhhhhhHHHHhhhhhccccchHHHH-HHHHcCCCCHHHHHHHHHHHHHHCCCCcC
Confidence 4899999999999999999999999999 56778899999999999999999999985
No 7
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=99.80 E-value=2.7e-19 Score=172.04 Aligned_cols=159 Identities=16% Similarity=0.165 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHhccccccccc--cccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcc
Q 048738 85 HFRFRAIQWLIKVPIPYVLIS--YSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSL 161 (355)
Q Consensus 85 ~~R~~lvdWi~~V~~~y~~~~--l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l 161 (355)
..|.--...|.+++.+ ++ +..+|+.. +.||+||+..+ ++.+ .+.+++|+|||+||+|+||..+ ++
T Consensus 54 ~l~~~y~~~i~~~~~~---lkp~Lpq~viaTAivyf~RFy~~~-----Sv~~---~~p~~Ia~tclfLA~KvEE~~~-si 121 (305)
T TIGR00569 54 DLVKYYEKRLLDFCSA---FKPTMPTSVVGTAIMYFKRFYLNN-----SVME---YHPKIIMLTCVFLACKVEEFNV-SI 121 (305)
T ss_pred HHHHHHHHHHHHHHHH---hcCCCCchHHHHHHHHHhHHhccC-----chhh---cCHHHHHHHHHHHHHhccccCc-CH
Confidence 6888889999999999 89 99999999 99999999998 6654 3789999999999999999975 57
Q ss_pred cchhhhhccCc--ccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCC-----cchhhHHHHHHHHHHHHcccccc
Q 048738 162 HEIQMEELDYS--FQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDS-----LEFHLHNELTTLHINQTNADARL 234 (355)
Q Consensus 162 ~dl~v~~~~~~--f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~-----~~~~~~~~~~~~~ll~sl~d~~f 234 (355)
.++ +...... ..+++|++||..||++|+|++..++|+.||..|+..+.. ..........+.++..++...-+
T Consensus 122 ~~f-v~~~~~~~~~~~~~Il~~E~~lL~~L~F~L~V~hPyr~L~~~l~dl~~~l~~~~~~~~l~q~a~~~lndsl~Td~~ 200 (305)
T TIGR00569 122 DQF-VGNLKETPLKALEQVLEYELLLIQQLNFHLIVHNPYRPLEGFLIDIKTRLPGLENPEYLRKHADKFLNRTLLTDAY 200 (305)
T ss_pred HHH-HhhccCCchhhHHHHHHHHHHHHHHCCCcEEeeCccHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCce
Confidence 777 4443322 366899999999999999999999999999999864431 11111112234456666666668
Q ss_pred cCCCHHHHHHHHHHHHHHhhcC
Q 048738 235 LKYQPSVVAVSALWCSLDELTA 256 (355)
Q Consensus 235 l~~~PS~IAaAal~~a~~~l~~ 256 (355)
+.|+||.||+|||++|.+.++-
T Consensus 201 L~y~Ps~IAlAAI~lA~~~~~~ 222 (305)
T TIGR00569 201 LLYTPSQIALAAILHTASRAGL 222 (305)
T ss_pred ecCCHHHHHHHHHHHHHHHhCC
Confidence 8899999999999999997653
No 8
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=99.64 E-value=2e-15 Score=142.66 Aligned_cols=190 Identities=13% Similarity=0.171 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCccc
Q 048738 84 PHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLH 162 (355)
Q Consensus 84 ~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~ 162 (355)
...|.--++||.+.+.- ++|...+++. .-+|-||+..+ .+-+ .++..+++||++||+|+||... .+.
T Consensus 20 ~el~~LG~e~Iqea~IL---L~L~q~a~atgqVLFqRf~~~k-----s~v~---~~~e~vv~ACv~LASKiEE~Pr-r~r 87 (367)
T KOG0835|consen 20 EELRILGCELIQEAGIL---LNLPQVAMATGQVLFQRFCYSK-----SFVR---HDFEIVVMACVLLASKIEEEPR-RIR 87 (367)
T ss_pred HHHHHHhHHHHHhhhHh---hcCcHHHHHHHHHHHHHHHhcc-----cccc---ccHHHHHHHHHHHHhhhccccc-cHh
Confidence 46888899999999999 9999999999 99999999998 5543 3899999999999999999641 122
Q ss_pred ch-hh-----------------hhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCCcchhhHHHHHHHH
Q 048738 163 EI-QM-----------------EELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLH 224 (355)
Q Consensus 163 dl-~v-----------------~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~~~~~~~~~~~~~~ 224 (355)
|+ .| ..-.+.=.+..+.++|+.||.+|+|.+++..|+-++-.|+..++....-...+..+++
T Consensus 88 dVinVFh~L~~r~~~~~~~~~~~~~~~~~lk~~~ir~e~~ILr~LGF~~Hv~hPhklii~YLqtL~~~~~~~l~Q~~wNf 167 (367)
T KOG0835|consen 88 DVINVFHYLEQRRESEAAEHLILARLYINLKMQVIRAERRILRELGFDVHVEHPHKLIIMYLQTLQLPPNLKLLQAAWNF 167 (367)
T ss_pred HHHHHHHHHHHHHhccCcchhhhhhHHhhhhhHHHHHHHHHHHHhCCeeeeeccHHHHHHHHHHhcCCCchhHHHHHHHh
Confidence 21 00 0111222466789999999999999999999999999999998854332234455667
Q ss_pred HHHHcccccccCCCHHHHHHHHHHHHHHhhcCCChhHHHHHhcccCcCChhhHHH-HHHHHHHh
Q 048738 225 INQTNADARLLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDDVVR-CNMIMKSR 287 (355)
Q Consensus 225 ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~~~w~~~l~~~s~~~~~~~~e~v~~-C~~~m~~~ 287 (355)
...++...-|..|+|+.||+|||++|.+.++...+.. .+|..++. ..+++|.. |+.+|.-+
T Consensus 168 mNDslRT~v~vry~pe~iACaciyLaAR~~eIpLp~~-P~Wf~~Fd-~~k~eid~ic~~l~~lY 229 (367)
T KOG0835|consen 168 MNDSLRTDVFVRYSPESIACACIYLAARNLEIPLPFQ-PHWFKAFD-TTKREIDEICYRLIPLY 229 (367)
T ss_pred hhhccccceeeecCHHHHHHHHHHHHHhhhcCCCCCC-ccHHHHcC-CcHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999876111010 02223332 24555553 66666544
No 9
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=7.9e-15 Score=141.37 Aligned_cols=190 Identities=16% Similarity=0.211 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCccc
Q 048738 84 PHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLH 162 (355)
Q Consensus 84 ~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~ 162 (355)
...|.....||.+++.. +++++.|+.. +.|+.||.... .+... ..+.+|++||+||+|.||... .+.
T Consensus 36 ~~~r~~~~~fI~elg~~---L~~~~~ti~tA~~~~hRFy~~~-----s~~~~---~~~~vA~sclfLAgKvEetp~-kl~ 103 (323)
T KOG0834|consen 36 LRLRQEGAKFIQELGVR---LKMPQKTIATAIVIFHRFYMFH-----SFKKF---DPYTVAASCLFLAGKVEETPR-KLE 103 (323)
T ss_pred HHHHHHHHHHHHHHHHH---cCCCccchhhhhhhhhhhhhhc-----ccccC---cHHHHHHHHHHHHhhcccCcc-cHH
Confidence 46999999999999999 9999999999 99999999888 66543 558999999999999999863 345
Q ss_pred chhhhhc-------------cCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCCcchhh--HHHHHHHHHHH
Q 048738 163 EIQMEEL-------------DYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHL--HNELTTLHINQ 227 (355)
Q Consensus 163 dl~v~~~-------------~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~~~~~~--~~~~~~~~ll~ 227 (355)
|+ +..+ .+.=.++.|+..|+.||++|+|++++-.|+.||..|+..+....... .....+.++..
T Consensus 104 dI-i~~s~~~~~~~~~~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~~~~~~~~~~a~~Aw~~~nD 182 (323)
T KOG0834|consen 104 DI-IKVSYRYLNPKDLELEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLKADENLKQPLAQAAWNFVND 182 (323)
T ss_pred HH-HHHHHHHcCcccccHHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhhhhhhccccHHHHHHHHhch
Confidence 54 2211 11123678999999999999999999999999999999987543211 11122233557
Q ss_pred HcccccccCCCHHHHHHHHHHHHHHhhcCC---ChhHHHHHhcccCcCChhhHHH-HHHHHHHh
Q 048738 228 TNADARLLKYQPSVVAVSALWCSLDELTAS---SCAHVAFITRLFNQEQKDDVVR-CNMIMKSR 287 (355)
Q Consensus 228 sl~d~~fl~~~PS~IAaAal~~a~~~l~~~---w~~~l~~~s~~~~~~~~e~v~~-C~~~m~~~ 287 (355)
++...-.++|.|..||+|+|.+|....+-. +... .++..+-..+..|.+.. |.+++.-+
T Consensus 183 ~~~t~~cL~y~p~~IAva~i~lA~~~~~~~~~~~~~~-~w~~~~d~~vt~e~l~~i~~~~l~~y 245 (323)
T KOG0834|consen 183 SLRTTLCLQYSPHSIAVACIHLAAKLLGVELPSDTDK-RWWREFDETVTNELLDDICHEFLDLY 245 (323)
T ss_pred hheeeeeEeecCcEEEeehhhHHHHHcCCCCCCCccc-chhhhhcccCCHHHHHHHHHHHHHHH
Confidence 888888999999999999999999865432 3222 34544544466788886 55555544
No 10
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=99.46 E-value=3.3e-13 Score=127.56 Aligned_cols=162 Identities=18% Similarity=0.205 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCC--CCCc
Q 048738 84 PHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDT--SSPS 160 (355)
Q Consensus 84 ~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~--~~p~ 160 (355)
...|.....|+..++.+ ++|...++.. |.+++||..+. .+.+ -.++-++.||++||+|.||+ +. .
T Consensus 42 ~~l~i~~~k~i~~l~~~---L~lp~~~laTAi~~f~Rf~Lk~-----sv~e---~~~~~vv~tcv~LA~K~ed~~~~I-~ 109 (297)
T COG5333 42 LNLVIYYLKLIMDLCTR---LNLPQTVLATAILFFSRFYLKN-----SVEE---ISLYSVVTTCVYLACKVEDTPRDI-S 109 (297)
T ss_pred hhHHHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHHhhc-----cccc---ccHHHHHHhheeeeeecccccchh-h
Confidence 45777888999999999 8999999999 99999999999 5543 48899999999999999995 21 1
Q ss_pred ccchhhhh---ccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcccccccCC
Q 048738 161 LHEIQMEE---LDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLHINQTNADARLLKY 237 (355)
Q Consensus 161 l~dl~v~~---~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~~~~~~~~~~~~~~ll~sl~d~~fl~~ 237 (355)
+..+.... -...=+++.|..+|..||++|+|++.++.|+..+..|+..+...+.....+..+.++..++...-++-|
T Consensus 110 i~~~~~~~~~se~~~~sr~~Il~~E~~lLEaL~fd~~V~hPy~~l~~f~~~~q~~~~~~~~~~aw~~inDa~~t~~~lly 189 (297)
T COG5333 110 IESFEARDLWSEEPKSSRERILEYEFELLEALDFDLHVHHPYKYLEGFLKDLQEKDKYKLLQIAWKIINDALRTDLCLLY 189 (297)
T ss_pred HHHHHhhccccccccccHHHHHHHHHHHHHHcccceEeccccHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhceeeeec
Confidence 12221110 023347889999999999999999999999999999998876544322334455567788888999999
Q ss_pred CHHHHHHHHHHHHHHhhcCC
Q 048738 238 QPSVVAVSALWCSLDELTAS 257 (355)
Q Consensus 238 ~PS~IAaAal~~a~~~l~~~ 257 (355)
+|..||+||++.|.+.++..
T Consensus 190 pphiIA~a~l~ia~~~~~~~ 209 (297)
T COG5333 190 PPHIIALAALLIACEVLGMP 209 (297)
T ss_pred ChHHHHHHHHHHHHHhcCCc
Confidence 99999999999999987543
No 11
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=99.39 E-value=7.7e-13 Score=108.83 Aligned_cols=88 Identities=19% Similarity=0.259 Sum_probs=68.8
Q ss_pred cChHHHHHHHHHhcCCcchhhHHHHHHHH-HHHHcccccccCCCHHHHHHHHHHHHHHhhc--CCChhHHHHHhcccCcC
Q 048738 196 ITTYSYVELLLTNFDSLEFHLHNELTTLH-INQTNADARLLKYQPSVVAVSALWCSLDELT--ASSCAHVAFITRLFNQE 272 (355)
Q Consensus 196 pTp~~FL~~fl~~~~~~~~~~~~~~~~~~-ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~--~~w~~~l~~~s~~~~~~ 272 (355)
|||++||++|++..+ . ......+..| ++.++.++.|++|+||+|||||+++|+..++ +.|+..+..++|+
T Consensus 1 PTp~~Fl~~~~~~~~-~--~~~~~~~a~~l~el~l~~~~fl~~~PS~iAaAai~lA~~~~~~~~~~~~~l~~~t~~---- 73 (118)
T PF02984_consen 1 PTPYDFLRRFLKISN-A--DQEVRNLARYLLELSLLDYEFLQYPPSVIAAAAILLARKILGKEPPWPESLEKLTGY---- 73 (118)
T ss_dssp --HHHHHHHHHTSSS-H--HHHHHHHHHHHHHHHHHSHHHTTS-HHHHHHHHHHHHHHHHHSSTCSHHHHHHHHTS----
T ss_pred CcHHHHHHHHHHHcC-C--cHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhCccccCCccchhhcCC----
Confidence 899999999965432 1 2223445556 4599999999999999999999999999876 4699989999988
Q ss_pred ChhhHHHHHHHHHHhhhC
Q 048738 273 QKDDVVRCNMIMKSRLVD 290 (355)
Q Consensus 273 ~~e~v~~C~~~m~~~~~~ 290 (355)
++++|.+|++.|.+...+
T Consensus 74 ~~~~l~~c~~~i~~~~~~ 91 (118)
T PF02984_consen 74 DKEDLKECIELIQELLSK 91 (118)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 589999999999988764
No 12
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription]
Probab=99.34 E-value=3.3e-12 Score=115.88 Aligned_cols=187 Identities=14% Similarity=0.102 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccc
Q 048738 85 HFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHE 163 (355)
Q Consensus 85 ~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~d 163 (355)
..+--..+.|..++.+ +++....+.. +-||-||+.+. ++.+ -...|+|.||++||+|+||..+...+-
T Consensus 39 ~l~i~~~n~I~~lg~~---lklRQ~ViATAivY~rRfy~r~-----S~k~---~~p~lla~TClyLAcKvEE~~i~~~r~ 107 (264)
T KOG0794|consen 39 KLKIFMANVIQKLGQH---LKLRQRVIATAIVYFRRFYLRK-----SLKE---IEPRLLAPTCLYLACKVEECPIVHIRL 107 (264)
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-----hhhc---cCHHHHHHHHHHHHhhhhhcchHHHHH
Confidence 4555567788999999 8999999999 99999999999 6543 377899999999999999986333222
Q ss_pred hhh-----------hhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcccc
Q 048738 164 IQM-----------EELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLHINQTNADA 232 (355)
Q Consensus 164 l~v-----------~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~~~~~~~~~~~~~~ll~sl~d~ 232 (355)
+.. ......|+...|..||..+|+.|+.-+-+-.|+.=|..|+...+..+.. ...+.+.-+..+....
T Consensus 108 l~~~a~~L~~~f~~~~e~~~~~~~~I~e~Ef~llE~Ld~~LIVhHPYrsL~q~~qd~gi~d~~-~l~~~W~ivNDSyr~D 186 (264)
T KOG0794|consen 108 LVNEAKVLKTRFSYWPEKFPYERKDILEMEFYLLEALDCYLIVHHPYRSLLQFVQDMGINDQK-LLQLAWSIVNDSYRMD 186 (264)
T ss_pred HHHHHHHHhhhcccchhhcCCCcCcchhhhhhHHhhhceeEEEecCCccHHHHHHHhcccchh-hhhhhHhhhcchhhcc
Confidence 210 1124567889999999999999999999999999999998887643321 2233333345777777
Q ss_pred cccCCCHHHHHHHHHHHHHHhhcCCChhHHHHHhcccCcCChhhHHHHHHHHHHh
Q 048738 233 RLLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDDVVRCNMIMKSR 287 (355)
Q Consensus 233 ~fl~~~PS~IAaAal~~a~~~l~~~w~~~l~~~s~~~~~~~~e~v~~C~~~m~~~ 287 (355)
-.+-|+|-.||.||++.|....+..- ..+++.... ++-+.|..|++.+..+
T Consensus 187 l~Ll~PPh~IalAcl~Ia~~~~~k~~--~~~w~~el~--vD~ekV~~~v~~I~~l 237 (264)
T KOG0794|consen 187 LCLLYPPHQIALACLYIACVIDEKDI--PKAWFAELS--VDMEKVKDIVQEILKL 237 (264)
T ss_pred eeeecCHHHHHHHHHHHHHhhcCCCh--HHHHHHHHh--ccHHHHHHHHHHHHHH
Confidence 78899999999999999998665431 122333333 5788899998877654
No 13
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=99.30 E-value=2.1e-12 Score=99.58 Aligned_cols=86 Identities=28% Similarity=0.304 Sum_probs=75.1
Q ss_pred HHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchh
Q 048738 87 RFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQ 165 (355)
Q Consensus 87 R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~ 165 (355)
|..+++||.+++.. ++++++|.++ +.|+|||+... .+. .+..+++|+||++||+|++|. ++...++
T Consensus 2 ~~~~~~~l~~~~~~---~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~ia~a~l~lA~k~~~~-~~~~~~~- 68 (88)
T cd00043 2 RPTPLDFLRRVAKA---LGLSPETLTLAVNLLDRFLLDY-----SVL---GRSPSLVAAAALYLAAKVEEI-PPWLKDL- 68 (88)
T ss_pred cchHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHhc-----ccc---cCChHHHHHHHHHHHHHHcCC-CCCHHHH-
Confidence 67899999999999 8999999999 99999999988 554 358899999999999999999 7888888
Q ss_pred hhhccCcccHHHHHHHHHHHH
Q 048738 166 MEELDYSFQSSTIRRMELTLL 186 (355)
Q Consensus 166 v~~~~~~f~~~~I~~ME~~IL 186 (355)
+..+++. +.++|.+||+.||
T Consensus 69 ~~~~~~~-~~~~i~~~e~~il 88 (88)
T cd00043 69 VHVTGYA-TEEEILRMEKLLL 88 (88)
T ss_pred hHHhCCC-CHHHHHHHHHHhC
Confidence 4555333 9999999999875
No 14
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=99.20 E-value=1.2e-11 Score=94.28 Aligned_cols=82 Identities=27% Similarity=0.325 Sum_probs=69.8
Q ss_pred HHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhcc
Q 048738 92 QWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELD 170 (355)
Q Consensus 92 dWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~ 170 (355)
+||.+++.. +++++++.++ ++++|||+... .+.+ ...+++|+||++||+|++|.. |...++ ...++
T Consensus 1 ~~l~~~~~~---~~~~~~~~~~a~~~~~~~l~~~-----~~~~---~~~~~ia~a~l~lA~k~~~~~-~~~~~~-~~~~~ 67 (83)
T smart00385 1 DFLRRVCKA---LNLDPETLNLAVNLLDRFLSDY-----KFLK---YSPSLIAAAALYLAAKTEEIP-PWTKEL-VHYTG 67 (83)
T ss_pred CHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHh-----hccc---CCHHHHHHHHHHHHHHHhcCC-CCchhH-hHhhC
Confidence 599999999 8999999999 99999999976 4543 388999999999999999987 566777 44555
Q ss_pred CcccHHHHHHHHHHHHH
Q 048738 171 YSFQSSTIRRMELTLLQ 187 (355)
Q Consensus 171 ~~f~~~~I~~ME~~IL~ 187 (355)
+ |+.++|.+||+.||.
T Consensus 68 ~-~~~~~i~~~~~~il~ 83 (83)
T smart00385 68 Y-FTEEEILRMEKLLLE 83 (83)
T ss_pred C-CCHHHHHHHHHHHhC
Confidence 5 899999999999973
No 15
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=98.91 E-value=8.6e-08 Score=93.09 Aligned_cols=179 Identities=16% Similarity=0.059 Sum_probs=132.8
Q ss_pred HHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhh
Q 048738 88 FRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQM 166 (355)
Q Consensus 88 ~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v 166 (355)
..+..-|-+++.. ++++..+.-. ..++.++.... .+.. .....+++|||++|+|.++.. -++.++ .
T Consensus 123 ~~a~~~I~~~~~~---L~Lp~~v~e~A~~iyk~~~~~~-----~~rg---rs~~~i~AAclYiACR~~~~p-rtl~eI-~ 189 (310)
T PRK00423 123 AFALSELDRIASQ---LGLPRSVREEAAVIYRKAVEKG-----LIRG---RSIEGVVAAALYAACRRCKVP-RTLDEI-A 189 (310)
T ss_pred HHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHhcC-----cccC---CCHHHHHHHHHHHHHHHcCCC-cCHHHH-H
Confidence 4456667888999 8999888888 99999998877 4422 367899999999999997765 578888 4
Q ss_pred hhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCCcchhhHHHHHHHHHH-HHcccccccCCCHHHHHHH
Q 048738 167 EELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLHIN-QTNADARLLKYQPSVVAVS 245 (355)
Q Consensus 167 ~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~~~~~~~~~~~~~~ll-~sl~d~~fl~~~PS~IAaA 245 (355)
..+ ..++++|-+.++.|++.|+.++..+.|.+|+..|...++.... .. -.+.+|. .+....-..+.+|..||||
T Consensus 190 ~~~--~v~~k~i~~~~~~l~k~L~~~~~~~~p~~~i~r~~~~L~L~~~-v~--~~A~~i~~~a~~~~l~~Gr~P~sIAAA 264 (310)
T PRK00423 190 EVS--RVSRKEIGRCYRFLLRELNLKLPPTDPIDYVPRFASELGLSGE-VQ--KKAIEILQKAKEKGLTSGKGPTGLAAA 264 (310)
T ss_pred HHh--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHH-HH--HHHHHHHHHHHhcCcccCCCHHHHHHH
Confidence 443 3689999999999999999999999999999999999885432 11 1222333 3333334578999999999
Q ss_pred HHHHHHHhhcCC-ChhHHHHHhcccCcCChhhHHHHHHHHHHhh
Q 048738 246 ALWCSLDELTAS-SCAHVAFITRLFNQEQKDDVVRCNMIMKSRL 288 (355)
Q Consensus 246 al~~a~~~l~~~-w~~~l~~~s~~~~~~~~e~v~~C~~~m~~~~ 288 (355)
|||+|....+.. ....+...++ +.+..|...|+.|.+.+
T Consensus 265 aIYlA~~~~g~~~t~keIa~v~~----Vs~~tI~~~ykel~~~l 304 (310)
T PRK00423 265 AIYIASLLLGERRTQREVAEVAG----VTEVTVRNRYKELAEKL 304 (310)
T ss_pred HHHHHHHHhCCCCCHHHHHHHcC----CCHHHHHHHHHHHHHHh
Confidence 999999865533 2222333333 45677888888887754
No 16
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=98.82 E-value=8e-09 Score=97.49 Aligned_cols=150 Identities=15% Similarity=0.200 Sum_probs=108.7
Q ss_pred HHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhcc-
Q 048738 93 WLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELD- 170 (355)
Q Consensus 93 Wi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~- 170 (355)
-+++.+..|+ -++.++.+-. +.+|-||+-.. .+.+. .-..|..||+|+|+|.+|-+ .++.+| +....
T Consensus 62 ~l~~f~~k~~-p~lp~~Vv~TA~~fFkRffL~n-----svme~---~pk~I~~tc~flA~Kieef~-ISieqF-vkn~~~ 130 (325)
T KOG2496|consen 62 SLVNFYSKFK-PNLPTSVVSTAIEFFKRFFLEN-----SVMEY---SPKIIMATCFFLACKIEEFY-ISIEQF-VKNMNG 130 (325)
T ss_pred HHHHHHHHhc-CCCchHHHHHHHHHHHHHHHhc-----chhhc---ChHHHHHHHHHHHhhhHhhe-ecHHHH-HhhccC
Confidence 3444445533 2567788888 99999999888 55543 55789999999999999987 566777 44432
Q ss_pred -CcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCCc-----chhhHHHHH--HHHHHHHcccccccCCCHHHH
Q 048738 171 -YSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSL-----EFHLHNELT--TLHINQTNADARLLKYQPSVV 242 (355)
Q Consensus 171 -~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~~-----~~~~~~~~~--~~~ll~sl~d~~fl~~~PS~I 242 (355)
..=+.+.|+..|..+|+.|+|++..-+|+.=++-|+..+... ++....... ..++..+++...++-|.||.|
T Consensus 131 ~~~k~~e~vLk~E~~llqsL~f~L~vh~PyRPleGFl~D~kt~l~~~~n~d~~~~~~d~~~fl~~~lltDa~lLytPsQI 210 (325)
T KOG2496|consen 131 RKWKTHEIVLKYEFLLLQSLKFSLTVHNPYRPLEGFLLDMKTRLPALENPDILRKHDDSKKFLDRALLTDAYLLYTPSQI 210 (325)
T ss_pred cccccHHHHHhchHHHHHhhhhhheecCCCCchHHHHHHHHHHHHhccCHHHHhhhhhHHHHHHHHHHhccceecChHHH
Confidence 345788999999999999999999999999998887644211 111111111 133567777778888999999
Q ss_pred HHHHHHHHHHh
Q 048738 243 AVSALWCSLDE 253 (355)
Q Consensus 243 AaAal~~a~~~ 253 (355)
|.|||+.|...
T Consensus 211 ALaAil~a~~~ 221 (325)
T KOG2496|consen 211 ALAAILHAAGR 221 (325)
T ss_pred HHHHHHHHhcc
Confidence 99999766443
No 17
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=97.90 E-value=1.6e-05 Score=69.15 Aligned_cols=93 Identities=16% Similarity=0.097 Sum_probs=64.9
Q ss_pred HHHHHHhccccccccccccchhhh-hhhhccchh--cccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhh
Q 048738 90 AIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKS--VYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQM 166 (355)
Q Consensus 90 lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs--~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v 166 (355)
+.+|+.++... .+++++++.. .-|+||+.. ... .+.- .+...+-+-++||.||+|+-+-....-..+.
T Consensus 54 i~~fl~ri~~~---~~~s~~~~i~aliYl~Rl~~~~~~~----~~~~-~~~~~~Rl~l~alilA~K~~~D~~~~n~~~a- 124 (149)
T PF08613_consen 54 IRDFLSRILKY---TQCSPECLILALIYLDRLRQRSRKP----NIPL-NSSNIHRLFLTALILASKFLDDNTYSNKSWA- 124 (149)
T ss_dssp HHHHHHHHHHH---TT--HHHHHHHHHHHHHHHH--H-T----T----STTTHHHHHHHHHHHHHHHH-SS---HHHHH-
T ss_pred HHHHHHHHHHH---cCCChHHHHHHHHHHHHHHHhhccc----cccc-ccchhHHHHHHHHHHHHhhcccccccHHHHH-
Confidence 67788888877 7889999999 999999998 221 2221 2346778899999999999777666666662
Q ss_pred hhccCcccHHHHHHHHHHHHHHcCCcc
Q 048738 167 EELDYSFQSSTIRRMELTLLQSLGWRL 193 (355)
Q Consensus 167 ~~~~~~f~~~~I~~ME~~IL~~L~w~l 193 (355)
..+ .++.+++-+||+..|..|+|+|
T Consensus 125 ~v~--gis~~eln~lE~~fL~~l~~~L 149 (149)
T PF08613_consen 125 KVG--GISLKELNELEREFLKLLDYNL 149 (149)
T ss_dssp HHH--TS-HHHHHHHHHHHHHHTTT--
T ss_pred hhc--CCCHHHHHHHHHHHHHHCCCcC
Confidence 333 3799999999999999999986
No 18
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=97.54 E-value=0.00097 Score=50.61 Aligned_cols=84 Identities=13% Similarity=0.176 Sum_probs=61.2
Q ss_pred CcChHHHHHHHHHhcCCcchhhHHHHHHHH-HHHHcccccccCCCHHHHHHHHHHHHHHhhcC-CChhHHHHHhcccCcC
Q 048738 195 CITTYSYVELLLTNFDSLEFHLHNELTTLH-INQTNADARLLKYQPSVVAVSALWCSLDELTA-SSCAHVAFITRLFNQE 272 (355)
Q Consensus 195 ~pTp~~FL~~fl~~~~~~~~~~~~~~~~~~-ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~~-~w~~~l~~~s~~~~~~ 272 (355)
.|++.+|+..+...++.... ...++.+ +...+....+..+.|+.||+||+++|.+..+. .|...+..++++.
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~ia~a~l~lA~k~~~~~~~~~~~~~~~~~~--- 75 (88)
T cd00043 2 RPTPLDFLRRVAKALGLSPE---TLTLAVNLLDRFLLDYSVLGRSPSLVAAAALYLAAKVEEIPPWLKDLVHVTGYA--- 75 (88)
T ss_pred cchHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHcCCCCCHHHHhHHhCCC---
Confidence 58999999999998864321 1223333 55777777888999999999999999996544 4777776666663
Q ss_pred ChhhHHHHHHHH
Q 048738 273 QKDDVVRCNMIM 284 (355)
Q Consensus 273 ~~e~v~~C~~~m 284 (355)
..++|..|...+
T Consensus 76 ~~~~i~~~e~~i 87 (88)
T cd00043 76 TEEEILRMEKLL 87 (88)
T ss_pred CHHHHHHHHHHh
Confidence 477788777654
No 19
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=97.49 E-value=0.00071 Score=50.87 Aligned_cols=80 Identities=14% Similarity=0.264 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCcchhhHHHHHHHH-HHHHcccccccCCCHHHHHHHHHHHHHHhhcCC-ChhHHHHHhcccCcCChhhH
Q 048738 200 SYVELLLTNFDSLEFHLHNELTTLH-INQTNADARLLKYQPSVVAVSALWCSLDELTAS-SCAHVAFITRLFNQEQKDDV 277 (355)
Q Consensus 200 ~FL~~fl~~~~~~~~~~~~~~~~~~-ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~~~-w~~~l~~~s~~~~~~~~e~v 277 (355)
+|+..+...++... ....++.+ +...+.+..+..++|+.||+||+++|.+..+.. |...+..++++ -+++++
T Consensus 1 ~~l~~~~~~~~~~~---~~~~~a~~~~~~~l~~~~~~~~~~~~ia~a~l~lA~k~~~~~~~~~~~~~~~~~---~~~~~i 74 (83)
T smart00385 1 DFLRRVCKALNLDP---ETLNLAVNLLDRFLSDYKFLKYSPSLIAAAALYLAAKTEEIPPWTKELVHYTGY---FTEEEI 74 (83)
T ss_pred CHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCCchhHhHhhCC---CCHHHH
Confidence 37777777776422 11223333 446677788999999999999999999976543 77777777766 247788
Q ss_pred HHHHHHHH
Q 048738 278 VRCNMIMK 285 (355)
Q Consensus 278 ~~C~~~m~ 285 (355)
.+|.+.|.
T Consensus 75 ~~~~~~il 82 (83)
T smart00385 75 LRMEKLLL 82 (83)
T ss_pred HHHHHHHh
Confidence 88887664
No 20
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=97.38 E-value=0.0081 Score=57.75 Aligned_cols=175 Identities=14% Similarity=0.146 Sum_probs=113.3
Q ss_pred HHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhh
Q 048738 89 RAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQME 167 (355)
Q Consensus 89 ~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~ 167 (355)
.+..-+-.++.. +++.....-. ..++=+.+... +. +....+-++++|+++|++..... -++.++ ..
T Consensus 99 ~a~~~l~~~~~~---l~LP~~v~e~A~~iyr~a~~~~------l~--rGRsie~v~AA~iY~acR~~~~p-rtl~eI-a~ 165 (285)
T COG1405 99 TALEELERIASA---LGLPESVRETAARIYRKAVDKG------LL--RGRSIESVAAACIYAACRINGVP-RTLDEI-AK 165 (285)
T ss_pred HHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhhcC------CC--cCCcHHHHHHHHHHHHHHHcCCC-ccHHHH-HH
Confidence 344455555566 5655544433 34444444443 22 22367889999999999987654 456676 33
Q ss_pred hccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCCcchhhHHHHHHHHHH-HHcccccccCCCHHHHHHHH
Q 048738 168 ELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLHIN-QTNADARLLKYQPSVVAVSA 246 (355)
Q Consensus 168 ~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~~~~~~~~~~~~~~ll-~sl~d~~fl~~~PS~IAaAa 246 (355)
..+ -++++|.++.+.+...|+=.+.+..|.+|+..|...++... ...... ..|. .+...-.-.+=.|+-|||||
T Consensus 166 a~~--V~~kei~rtyr~~~~~L~l~~~~~~p~~yi~rf~s~L~l~~-~v~~~a--~ei~~~~~~~g~~~Gk~P~glAaaa 240 (285)
T COG1405 166 ALG--VSKKEIGRTYRLLVRELKLKIPPVDPSDYIPRFASKLGLSD-EVRRKA--IEIVKKAKRAGLTAGKSPAGLAAAA 240 (285)
T ss_pred HHC--CCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCCH-HHHHHH--HHHHHHHHHhCcccCCCchhHHHHH
Confidence 333 77899999999999999999999999999999999998642 222221 1232 34434444588999999999
Q ss_pred HHHHHHhhcCC-ChhHHHHHhcccCcCChhhHHHHHHHHH
Q 048738 247 LWCSLDELTAS-SCAHVAFITRLFNQEQKDDVVRCNMIMK 285 (355)
Q Consensus 247 l~~a~~~l~~~-w~~~l~~~s~~~~~~~~e~v~~C~~~m~ 285 (355)
+|+|....+-. .....+.+++.. +.-|+.=|+-|.
T Consensus 241 iy~as~l~~~~~tq~eva~v~~vt----evTIrnrykel~ 276 (285)
T COG1405 241 IYLASLLLGERRTQKEVAKVAGVT----EVTIRNRYKELA 276 (285)
T ss_pred HHHHHHHhCCchHHHHHHHHhCCe----eeHHHHHHHHHH
Confidence 99999866532 222344455553 444555554433
No 21
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription]
Probab=97.04 E-value=0.012 Score=56.05 Aligned_cols=173 Identities=13% Similarity=0.101 Sum_probs=114.1
Q ss_pred HHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCc
Q 048738 94 LIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYS 172 (355)
Q Consensus 94 i~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~ 172 (355)
|..+++. .+|.....-. -.+|-++-..+ . .++ ...+-++.|||+||+.-++. +-++.+++ ..+ +
T Consensus 111 I~~m~d~---~~Lp~~I~d~A~~ifk~v~~~k-----~-lrG--ks~eai~AAclyiACRq~~~-pRT~kEI~-~~a-n- 175 (308)
T KOG1597|consen 111 ITAMCDR---LSLPATIKDRANEIFKLVEDSK-----L-LRG--KSVEALAAACLYIACRQEDV-PRTFKEIS-AVA-N- 175 (308)
T ss_pred HHHHHHH---hCCchHHHHHHHHHHHHHHHhh-----h-hcC--ccHHHHHHHHHHHHHHhcCC-CchHHHHH-HHH-c-
Confidence 4445555 5555544444 55666665443 2 222 36789999999999997654 35677774 233 3
Q ss_pred ccHHHHHHHHHHHHHHcCCcccCcC--hHHHHHHHHHhcCCcchhhHHHHHHHHHHHHccccccc-CCCHHHHHHHHHHH
Q 048738 173 FQSSTIRRMELTLLQSLGWRLGCIT--TYSYVELLLTNFDSLEFHLHNELTTLHINQTNADARLL-KYQPSVVAVSALWC 249 (355)
Q Consensus 173 f~~~~I~~ME~~IL~~L~w~l~~pT--p~~FL~~fl~~~~~~~~~~~~~~~~~~ll~sl~d~~fl-~~~PS~IAaAal~~ 249 (355)
.++++|-+.=+.|+..|+=.+..-| .-+|+.+|...++..... .-...++.....+..+. +-.|=.||||+||+
T Consensus 176 v~kKEIgr~~K~i~~~l~~s~~~~s~~t~~~m~RFCs~L~L~~~~---q~aA~e~a~ka~~~~~~~gRsPiSIAAa~IYm 252 (308)
T KOG1597|consen 176 VSKKEIGRCVKLIGEALETSVDLISISTGDFMPRFCSNLGLPKSA---QEAATEIAEKAEEMDIRAGRSPISIAAAAIYM 252 (308)
T ss_pred CCHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHHHhccccCCCchhHHHHHHHH
Confidence 8999999999999999988777666 889999999998754321 11222444444444444 46799999999999
Q ss_pred HHHhhc-CCChhHHHHHhcccCcCChhhHHHHHHHHHHhh
Q 048738 250 SLDELT-ASSCAHVAFITRLFNQEQKDDVVRCNMIMKSRL 288 (355)
Q Consensus 250 a~~~l~-~~w~~~l~~~s~~~~~~~~e~v~~C~~~m~~~~ 288 (355)
+..--. +.....+...+|.. +.-|+.-|+.|....
T Consensus 253 isqls~~kkt~keI~~vtgVa----E~TIr~sYK~Lyp~~ 288 (308)
T KOG1597|consen 253 ISQLSDEKKTQKEIGEVTGVA----EVTIRNSYKDLYPHA 288 (308)
T ss_pred HHHhccCcccHHHHHHHhhhh----HHHHHHHHHHHhhch
Confidence 987432 22333344556654 456788888887654
No 22
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning]
Probab=96.95 E-value=0.00025 Score=69.44 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=75.0
Q ss_pred HHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhh-
Q 048738 90 AIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQME- 167 (355)
Q Consensus 90 lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~- 167 (355)
+-.=|.++... .++..-|+.. --||....-+. .+.+ ..-.|.|-|||.+|+||.+..--.+..+ ++
T Consensus 385 lKREMr~l~~d---~~id~~TVa~AyVYFEKliLkg-----lisK---~NRKlcAGAclLlaaKmnD~Kks~vKsl-Iek 452 (497)
T KOG4164|consen 385 LKREMRELGED---CGIDVVTVAMAYVYFEKLILKG-----LISK---QNRKLCAGACLLLAAKMNDLKKSTVKSL-IEK 452 (497)
T ss_pred HHHHHHHhhhc---cCccceeehhHHHHHHHHHHhh-----hhhh---hhhhHHHHHHHHHHHHhhhhhhHHHHHH-HHH
Confidence 33445666666 7888889998 88898887776 4543 2668999999999999998766666666 33
Q ss_pred -hccCcccHHHHHHHHHHHHHHcCCcccCc
Q 048738 168 -ELDYSFQSSTIRRMELTLLQSLGWRLGCI 196 (355)
Q Consensus 168 -~~~~~f~~~~I~~ME~~IL~~L~w~l~~p 196 (355)
...+.+.+.+++..|.-||.+|+|.|+.|
T Consensus 453 ~Ee~fR~nrrdLia~Ef~VlvaLefaL~~~ 482 (497)
T KOG4164|consen 453 LEEQFRLNRRDLIAFEFPVLVALEFALHLP 482 (497)
T ss_pred HHHHhcccHHhhhhhhhhHHHhhhhhccCC
Confidence 34677899999999999999999999875
No 23
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription]
Probab=89.68 E-value=0.99 Score=46.57 Aligned_cols=169 Identities=13% Similarity=0.033 Sum_probs=107.3
Q ss_pred CCCCccccccCCCCc-H-HHHHHHH----HHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhh
Q 048738 69 PEPGYVEYLDQSNNL-P-HFRFRAI----QWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVEL 141 (355)
Q Consensus 69 p~~~yl~~~~q~~i~-~-~~R~~lv----dWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQL 141 (355)
+...|+..- |.+.. . ..|...+ .-|-++... +++.. ..-. .|+|---++.+ +.+ ....++
T Consensus 44 ~~G~~v~~~-~~g~~~s~e~r~~t~~n~r~~i~~~~~~---l~l~~-~~~~a~~~~k~a~~~n------ftk--Gr~~~~ 110 (521)
T KOG1598|consen 44 AQGQFVRVG-QSGAGSSLESREKTIYNARRLIEELTER---LNLGN-KTEVAFNFFKLAPDRN------FTK--GRRSTE 110 (521)
T ss_pred cceeEEecc-ccCCccchHHHHHHHHHHHhHHHHHHHh---cCcch-HHHHHHHHHHHHhhCC------CCC--CcchHH
Confidence 556666554 56554 2 2332222 246667777 67666 4334 66666656555 222 236789
Q ss_pred hHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCc---ccCcChHHHHHHHHHhcCCcchhhHH
Q 048738 142 VSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWR---LGCITTYSYVELLLTNFDSLEFHLHN 218 (355)
Q Consensus 142 lavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~---l~~pTp~~FL~~fl~~~~~~~~~~~~ 218 (355)
|-.+||+|++..|-+.+.. .||. ... ..+.-++-.+=+.|-..|.=. +..+-|.-|+.+|..++...+.. +.
T Consensus 111 vvasClY~vcR~e~t~hll-iDfS-~~L--qv~Vy~LG~~~l~l~~~L~i~en~~plvDpsL~i~Rfa~~L~~g~~~-~~ 185 (521)
T KOG1598|consen 111 VVAACLYLVCRLEKTDHLL-IDFS-SYL--QVSVYDLGSNFLEVTDSLSIGENVSPLVDPSLYIVRFSCRLLFGDKT-ED 185 (521)
T ss_pred HHHHHHHHHHHhhCCceEE-EEec-cce--EEehhhhhHHHHHHHHHhccccccccccCcceeeechhHhhhcCCch-HH
Confidence 9999999999988776543 3441 111 133334555556666666666 66778999999999988654432 22
Q ss_pred HHHHH-HH-HHHcccccccCCCHHHHHHHHHHHHHHhhc
Q 048738 219 ELTTL-HI-NQTNADARLLKYQPSVVAVSALWCSLDELT 255 (355)
Q Consensus 219 ~~~~~-~l-l~sl~d~~fl~~~PS~IAaAal~~a~~~l~ 255 (355)
-...+ +| .....|.-..+-+||-|..|||+.|.+..+
T Consensus 186 Vv~~a~~L~~rMkrdwm~tGRRPsglcGAaLliAar~h~ 224 (521)
T KOG1598|consen 186 VAKTATRLAQRMKRDWMQTGRRPSGLCGAALLIAARMHG 224 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHHHHcC
Confidence 22222 23 467778888999999999999999998643
No 24
>KOG1674 consensus Cyclin [General function prediction only]
Probab=88.97 E-value=0.63 Score=43.08 Aligned_cols=87 Identities=17% Similarity=0.038 Sum_probs=60.3
Q ss_pred cccccchhhh-hhhhccchhcccc----cccCCccccchh-hhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHH
Q 048738 104 ISYSLHLLFP-TNRVDIKKSVYVT----CVLSPAEWKYWM-VELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSST 177 (355)
Q Consensus 104 ~~l~~eTl~l-Vn~lDRfLs~~~~----~~~~~~~~k~~~-lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~ 177 (355)
...+++++.. -.|||||..+... ....+ +.-+ +.-+-++|+.+|+|+.+...-.-.-++ --+..+.++
T Consensus 89 ~~~s~~~lv~al~Yldr~~~~~~~~~~~~~~~i---~s~n~vhR~lit~v~vs~kf~~d~~y~n~~~a---~vggl~~~e 162 (218)
T KOG1674|consen 89 SKCSPECLVLALVYLDRFVKQPQARSVKPQSLI---NSLNKVHRLLITTVTVSTKFLDDVYYSNAYYA---KVGGLTTDE 162 (218)
T ss_pred hcCCchhhhhhhhhhhhhhhhhcccccCccccc---ccchhHHHHHHHHHHHHHhhccchhhhHHHHH---HhCCCChHh
Confidence 4557788888 9999999987310 00011 1123 555789999999999865433222221 124578889
Q ss_pred HHHHHHHHHHHcCCcccCc
Q 048738 178 IRRMELTLLQSLGWRLGCI 196 (355)
Q Consensus 178 I~~ME~~IL~~L~w~l~~p 196 (355)
+-.+|+..|..++|++..+
T Consensus 163 ln~lE~~~l~~~~~~l~i~ 181 (218)
T KOG1674|consen 163 LNKLELDLLFLLDFRLIIS 181 (218)
T ss_pred hhhhhHHHHhhCCeEEEec
Confidence 9999999999999999985
No 25
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning]
Probab=60.03 E-value=14 Score=36.27 Aligned_cols=52 Identities=19% Similarity=0.299 Sum_probs=35.1
Q ss_pred hhhhhHHhhHHHhhhhcCCCCCcccchh-hhhccCcccHHHHHHHHHHHHHHc
Q 048738 138 MVELVSVACLSIASKFNDTSSPSLHEIQ-MEELDYSFQSSTIRRMELTLLQSL 189 (355)
Q Consensus 138 ~lQLlavaCL~IAsK~eE~~~p~l~dl~-v~~~~~~f~~~~I~~ME~~IL~~L 189 (355)
.-+-||++|++||+|+-....|.-.+-. -...+...+.+++..+...+|...
T Consensus 193 ~p~~IAva~i~lA~~~~~~~~~~~~~~~w~~~~d~~vt~e~l~~i~~~~l~~y 245 (323)
T KOG0834|consen 193 SPHSIAVACIHLAAKLLGVELPSDTDKRWWREFDETVTNELLDDICHEFLDLY 245 (323)
T ss_pred cCcEEEeehhhHHHHHcCCCCCCCcccchhhhhcccCCHHHHHHHHHHHHHHH
Confidence 5578999999999999887666544330 112334477777777776666554
No 26
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=59.09 E-value=9.2 Score=28.40 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=35.9
Q ss_pred hccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccch
Q 048738 96 KVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEI 164 (355)
Q Consensus 96 ~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl 164 (355)
+++.. ++|+..+.-. ..++++-.... +.++ ....-++.+|+++|++.+... -++.++
T Consensus 3 r~~~~---L~L~~~v~~~A~~i~~~~~~~~------~~~G--r~~~~iaAA~iY~acr~~~~~-~t~~eI 60 (71)
T PF00382_consen 3 RICSK---LGLPEDVRERAKEIYKKAQERG------LLKG--RSPESIAAACIYLACRLNGVP-RTLKEI 60 (71)
T ss_dssp HHHHH---TT--HHHHHHHHHHHHHHHHTT------TSTT--S-HHHHHHHHHHHHHHHTTSS-SSHHHH
T ss_pred HHHhH---cCCCHHHHHHHHHHHHHHHHcC------Cccc--CCHHHHHHHHHHHHHHHcCCC-cCHHHH
Confidence 44556 6777766666 77776665555 2222 256789999999999987655 355665
No 27
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=50.39 E-value=68 Score=23.59 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=21.8
Q ss_pred HHHHccccc-ccCCCHHHHHHHHHHHHHHhhcC
Q 048738 225 INQTNADAR-LLKYQPSVVAVSALWCSLDELTA 256 (355)
Q Consensus 225 ll~sl~d~~-fl~~~PS~IAaAal~~a~~~l~~ 256 (355)
+.....+.. .-+-+|..|||||+|+|.+..+.
T Consensus 21 i~~~~~~~~~~~Gr~~~~iaAA~iY~acr~~~~ 53 (71)
T PF00382_consen 21 IYKKAQERGLLKGRSPESIAAACIYLACRLNGV 53 (71)
T ss_dssp HHHHHHHTTTSTTS-HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCcccCCHHHHHHHHHHHHHHHcCC
Confidence 443333334 45678999999999999987653
No 28
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=46.58 E-value=1.6e+02 Score=28.56 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhcCCcchhhHHHHHHHHHHH-HcccccccCCCHHHHHHHHHHHHHHhhcCCChhHHHHHhcccCcCChhh
Q 048738 198 TYSYVELLLTNFDSLEFHLHNELTTLHINQ-TNADARLLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDD 276 (355)
Q Consensus 198 p~~FL~~fl~~~~~~~~~~~~~~~~~~ll~-sl~d~~fl~~~PS~IAaAal~~a~~~l~~~w~~~l~~~s~~~~~~~~e~ 276 (355)
.+..|+.+...++..+. .. + .+..+.. ......+-+...-.+||||||+|.+.-+.. -++..+..+.. +++.+
T Consensus 125 a~~~I~~~~~~L~Lp~~-v~-e-~A~~iyk~~~~~~~~rgrs~~~i~AAclYiACR~~~~p--rtl~eI~~~~~-v~~k~ 198 (310)
T PRK00423 125 ALSELDRIASQLGLPRS-VR-E-EAAVIYRKAVEKGLIRGRSIEGVVAAALYAACRRCKVP--RTLDEIAEVSR-VSRKE 198 (310)
T ss_pred HHHHHHHHHHHcCCCHH-HH-H-HHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHcCCC--cCHHHHHHHhC-CCHHH
Confidence 45566666666654321 11 1 1122333 333333567788899999999999875432 23444544443 57888
Q ss_pred HHHHHHHHHHhh
Q 048738 277 VVRCNMIMKSRL 288 (355)
Q Consensus 277 v~~C~~~m~~~~ 288 (355)
|..+++.|...+
T Consensus 199 i~~~~~~l~k~L 210 (310)
T PRK00423 199 IGRCYRFLLREL 210 (310)
T ss_pred HHHHHHHHHHHh
Confidence 999999888765
No 29
>KOG1675 consensus Predicted cyclin [General function prediction only]
Probab=39.31 E-value=23 Score=34.53 Aligned_cols=88 Identities=13% Similarity=0.092 Sum_probs=52.6
Q ss_pred hhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHH
Q 048738 110 LLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQS 188 (355)
Q Consensus 110 Tl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~ 188 (355)
..-. ..|++|-+--... . +....| ..+.....++|+|+-....-.-.|. +.+. ..-+.+++..||+.+|..
T Consensus 210 ~aiitL~~~erl~~~~e~---~-~~p~~w--~r~~~g~il~sskv~~dqs~wnvdy-cqIl-Kd~tveDmNe~ERqfLel 281 (343)
T KOG1675|consen 210 CDIITLVYAERLLWLAER---D-PCPRNW--SRAVLGEILLSSKVYDDQSVWNVDY-CEIL-KDQSVDDMNALERQFLEL 281 (343)
T ss_pred cchHHHHhhHhhhhHhhc---C-CCcchh--hhhhhhhheehhhhhhhhhcccHHH-HHHH-hhccHhhHHHHHHHHHHH
Confidence 3344 6777877654410 1 222234 3344446899999855432221222 2222 345789999999999999
Q ss_pred cCCcccCcChHHHHHHHH
Q 048738 189 LGWRLGCITTYSYVELLL 206 (355)
Q Consensus 189 L~w~l~~pTp~~FL~~fl 206 (355)
|+|+++.|.. .|-.||.
T Consensus 282 LqfNinvp~s-vYAKyYf 298 (343)
T KOG1675|consen 282 LQFNINVPSS-EYAKYYF 298 (343)
T ss_pred HhhccCccHH-HHHHHHH
Confidence 9999998854 3444443
No 30
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription]
Probab=38.06 E-value=62 Score=31.36 Aligned_cols=57 Identities=19% Similarity=0.315 Sum_probs=39.6
Q ss_pred cccccccCCCHH-HHHHHHHHHHHHhhcCCChhHHHHHhcccCcCChhhHHHHHHHHHHhh
Q 048738 229 NADARLLKYQPS-VVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDDVVRCNMIMKSRL 288 (355)
Q Consensus 229 l~d~~fl~~~PS-~IAaAal~~a~~~l~~~w~~~l~~~s~~~~~~~~e~v~~C~~~m~~~~ 288 (355)
+.|...+.=+-. .||||||+.|.+..+-. -++..++...+ +.+.+|-+|.+++.+-+
T Consensus 135 v~~~k~lrGks~eai~AAclyiACRq~~~p--RT~kEI~~~an-v~kKEIgr~~K~i~~~l 192 (308)
T KOG1597|consen 135 VEDSKLLRGKSVEALAAACLYIACRQEDVP--RTFKEISAVAN-VSKKEIGRCVKLIGEAL 192 (308)
T ss_pred HHHhhhhcCccHHHHHHHHHHHHHHhcCCC--chHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence 335555544444 68999999999875432 24555666665 78999999999887654
No 31
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=31.49 E-value=3.9e+02 Score=25.75 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=59.9
Q ss_pred HHHHHHHcCCcccCc--------ChHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcccccccCCC-HHHHHHHHHHHHHH
Q 048738 182 ELTLLQSLGWRLGCI--------TTYSYVELLLTNFDSLEFHLHNELTTLHINQTNADARLLKYQ-PSVVAVSALWCSLD 252 (355)
Q Consensus 182 E~~IL~~L~w~l~~p--------Tp~~FL~~fl~~~~~~~~~~~~~~~~~~ll~sl~d~~fl~~~-PS~IAaAal~~a~~ 252 (355)
+..-|+..+.+.... +.+..|+.+...++...... +. +..|.....+..++.=+ ...++|||+|.|.+
T Consensus 76 ~~~rlr~~~~~~~v~~~~ernl~~a~~~l~~~~~~l~LP~~v~--e~-A~~iyr~a~~~~l~rGRsie~v~AA~iY~acR 152 (285)
T COG1405 76 KMYRLRKWQIRIRVSSAKERNLITALEELERIASALGLPESVR--ET-AARIYRKAVDKGLLRGRSIESVAAACIYAACR 152 (285)
T ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHhCCCchHH--HH-HHHHHHHHhhcCCCcCCcHHHHHHHHHHHHHH
Confidence 444455444444444 45666666666666433222 11 12344555566665544 77889999999988
Q ss_pred hhcCCChhHHHHHhcccCcCChhhHHHHHHHHHHhh
Q 048738 253 ELTASSCAHVAFITRLFNQEQKDDVVRCNMIMKSRL 288 (355)
Q Consensus 253 ~l~~~w~~~l~~~s~~~~~~~~e~v~~C~~~m~~~~ 288 (355)
..+-.. ++..+..... +++.++..+++.|...+
T Consensus 153 ~~~~pr--tl~eIa~a~~-V~~kei~rtyr~~~~~L 185 (285)
T COG1405 153 INGVPR--TLDEIAKALG-VSKKEIGRTYRLLVREL 185 (285)
T ss_pred HcCCCc--cHHHHHHHHC-CCHHHHHHHHHHHHHhc
Confidence 765442 2444444443 67889999999877654
No 32
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=29.22 E-value=69 Score=25.23 Aligned_cols=48 Identities=10% Similarity=0.193 Sum_probs=28.9
Q ss_pred hhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcC
Q 048738 140 ELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLG 190 (355)
Q Consensus 140 QLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~ 190 (355)
-++|+||+++|.+.-....+--..+ ...+ .++.++|...=..|.+.+.
T Consensus 43 S~iAaAai~lA~~~~~~~~~~~~~l-~~~t--~~~~~~l~~c~~~i~~~~~ 90 (118)
T PF02984_consen 43 SVIAAAAILLARKILGKEPPWPESL-EKLT--GYDKEDLKECIELIQELLS 90 (118)
T ss_dssp HHHHHHHHHHHHHHHHSSTCSHHHH-HHHH--TS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCCccc-hhhc--CCCHHHHHHHHHHHHHHHH
Confidence 5899999999999965322222223 2223 3577777776555555544
No 33
>PF09080 K-cyclin_vir_C: K cyclin, C terminal; InterPro: IPR015164 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This domain adopts a secondary structure consisting of a five alpha-helix cyclin fold. Interaction with cyclin dependent kinases (CDKs) at a PSTAIRE sequence motif within the catalytic cleft of CDK results in the regulation of CDK activity []. ; PDB: 1G3N_C.
Probab=23.55 E-value=3.2e+02 Score=21.72 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=23.7
Q ss_pred HHHHcccccccCCCHHHHHHH-HHHHHHHhhcCC
Q 048738 225 INQTNADARLLKYQPSVVAVS-ALWCSLDELTAS 257 (355)
Q Consensus 225 ll~sl~d~~fl~~~PS~IAaA-al~~a~~~l~~~ 257 (355)
+...+.|..--..+||.|||| |-+++.....|.
T Consensus 33 v~KAiV~P~TG~Lp~SlvaAA~CAL~~~~~~~P~ 66 (106)
T PF09080_consen 33 VHKAIVNPKTGGLPPSLVAAAGCALFSLGAAAPP 66 (106)
T ss_dssp HHHHHCSTTGGGS-HHHHHHHHHHHHS-GGGS--
T ss_pred HHHHhcCcccCCCCHHHHHHhhhhhccccccCCC
Confidence 557889999999999999998 777777655544
No 34
>KOG3932 consensus CDK5 kinase activator p35/Nck5a [Cell cycle control, cell division, chromosome partitioning]
Probab=23.53 E-value=38 Score=32.60 Aligned_cols=113 Identities=18% Similarity=0.181 Sum_probs=65.5
Q ss_pred HHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCC-ccccchhhhhhHHhhHHHhhhh--cCCCCCcccc
Q 048738 88 FRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSP-AEWKYWMVELVSVACLSIASKF--NDTSSPSLHE 163 (355)
Q Consensus 88 ~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~-~~~k~~~lQLlavaCL~IAsK~--eE~~~p~l~d 163 (355)
..+|-|+..|-...-+.+.....+.. .|++=-||-.+.. +.- ...+...+|-.-.+||+++--| .|+..|.-.-
T Consensus 223 gd~V~WlRsVDRSLLLQGWQD~aFInPANlVFvylLvRdv--lsg~e~~s~~eLqA~~LtCLYlsYSYMGNEISYPLKPF 300 (357)
T KOG3932|consen 223 GDLVTWLRSVDRSLLLQGWQDQAFINPANLVFVYLLVRDV--LSGEEIHSLEELQAWILTCLYLSYSYMGNEISYPLKPF 300 (357)
T ss_pred cchhHHHHhhhHHHHhhhccccccccchheehhhhhHHhh--cCchhhccHHHHHHHHHHHHHHHHHhhcccccccccce
Confidence 35788888887764333444555555 8888778766511 000 1123458999999999999887 5676665444
Q ss_pred hhhhhccCcccHHHHHHHHHHHHHHcCCccc--CcChHHHHHHHHHh
Q 048738 164 IQMEELDYSFQSSTIRRMELTLLQSLGWRLG--CITTYSYVELLLTN 208 (355)
Q Consensus 164 l~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~--~pTp~~FL~~fl~~ 208 (355)
| |+..+..|-..- +.|.+.|.=+|- -..|..|-+.|...
T Consensus 301 L-Ve~dke~FWdRC-----l~~vn~lS~qML~lNadp~fFteVFtdL 341 (357)
T KOG3932|consen 301 L-VENDKETFWDRC-----LAMVNSLSRQMLLLNADPHFFTEVFTDL 341 (357)
T ss_pred e-ecccHHHHHHHH-----HHHHHHhhHHHhhhcCCCchHHHHHHHh
Confidence 4 666655554332 223333332222 12466677767543
No 35
>PF03261 CDK5_activator: Cyclin-dependent kinase 5 activator protein; InterPro: IPR004944 These proteins are neuron specific activators of cyclin-dependent kinase 5 (CDK5) []. They form a heterodimer with the catalytic subunit (CDK5) [].; GO: 0016534 cyclin-dependent protein kinase 5 activator activity, 0016533 cyclin-dependent protein kinase 5 holoenzyme complex; PDB: 3O0G_D 1H4L_E 1UNH_D 1UNL_E 1UNG_E.
Probab=21.33 E-value=93 Score=30.82 Aligned_cols=111 Identities=17% Similarity=0.219 Sum_probs=54.9
Q ss_pred HHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhh--cCCCCCcccch
Q 048738 88 FRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKF--NDTSSPSLHEI 164 (355)
Q Consensus 88 ~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~--eE~~~p~l~dl 164 (355)
.++|-|+.-|-...-+.|.....+.. .|++=-||-.... +.-......++|-+..+||+||--| .|+-.|.-.-+
T Consensus 222 ~~~vmWlR~vDRsLLlqgwqd~~fi~pan~vf~yml~r~~--~~~~~~~~~~l~~~~l~cly~sysy~gneisyplkpfl 299 (346)
T PF03261_consen 222 GDVVMWLRAVDRSLLLQGWQDQAFINPANVVFVYMLCRDV--VSGEVSSERELQAIVLTCLYLSYSYMGNEISYPLKPFL 299 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTS-SS-S--HHHHHHHHHHHHHH--S-TT--SHHHHHHHHHHHHHHHHHHH-SSS---SGGG-
T ss_pred cceEeehhhcCHHHHhccccccceeccchhhhhHHHHHHh--hccccCCHHHHHHHHHHHHHHHhhhcCcccccccCCee
Confidence 45777777776663333444445545 6666666544310 0111123458999999999999888 57766654444
Q ss_pred hhhhccCcccHH---HHHHHHHHHHHHcCCcccCcChHHHHHHHHH
Q 048738 165 QMEELDYSFQSS---TIRRMELTLLQSLGWRLGCITTYSYVELLLT 207 (355)
Q Consensus 165 ~v~~~~~~f~~~---~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~ 207 (355)
|+..+..|-.. -|-+|-..+|+. + --|..|-+.|..
T Consensus 300 -v~~~~~~fw~~~~~~~~~~s~~ml~~-----n-~~~~~ft~~~~~ 338 (346)
T PF03261_consen 300 -VEESKEAFWDRCLSIINRLSAKMLRI-----N-ADPHFFTEVFTD 338 (346)
T ss_dssp --SS-HHHHHHHHHHHHHHHHHHHHHH-----H-H-HHHHHHHHHH
T ss_pred -ecccHHHHHHHHHHHHHHhhHHHhhh-----c-CCCchHHHHHHH
Confidence 66555444332 233344444432 1 245556555543
Done!