Query 048738
Match_columns 355
No_of_seqs 293 out of 1580
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 22:03:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g33_B CCND3 protein; Ser/Thr 100.0 2.3E-44 7.9E-49 346.0 22.9 224 52-292 37-269 (306)
2 2f2c_A Cyclin homolog, V-cycli 100.0 4E-44 1.4E-48 335.5 22.1 219 54-290 21-248 (254)
3 2cch_B Cyclin A2, cyclin-A; co 100.0 1.3E-44 4.6E-49 339.8 18.8 223 49-291 3-229 (260)
4 1g3n_C V-cyclin; cyclin-depend 100.0 3.9E-44 1.3E-48 336.2 18.9 219 54-290 20-248 (257)
5 1f5q_B Gamma herpesvirus cycli 100.0 3.2E-44 1.1E-48 336.1 13.3 216 53-290 21-242 (252)
6 2w96_A G1/S-specific cyclin-D1 100.0 3.8E-43 1.3E-47 331.8 20.3 220 53-291 24-258 (271)
7 2b9r_A Human cyclin B1; cell c 100.0 1.3E-43 4.3E-48 334.9 14.3 219 49-289 3-224 (269)
8 1w98_B Cyclin E, G1/S-specific 100.0 1.6E-41 5.5E-46 322.8 21.4 215 51-289 16-241 (283)
9 2i53_A Cyclin K; cell cycle, t 100.0 1.3E-31 4.5E-36 250.5 11.3 199 79-290 33-251 (258)
10 2ivx_A Cyclin-T2; transcriptio 100.0 2.9E-30 9.9E-35 241.5 15.1 192 83-290 27-240 (257)
11 3rgf_B Cyclin-C; protein kinas 100.0 2.9E-29 9.9E-34 238.6 15.4 187 84-289 40-241 (285)
12 1zp2_A RNA polymerase II holoe 100.0 2.8E-29 9.5E-34 232.1 14.4 187 86-290 27-220 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 2E-29 6.9E-34 246.8 9.5 185 83-289 34-246 (358)
14 1jkw_A Cyclin H; cell cycle, c 99.9 3.1E-27 1.1E-31 228.4 15.2 222 84-331 54-293 (323)
15 1c9b_A General transcription f 99.9 1.6E-21 5.5E-26 176.5 17.3 182 86-289 4-188 (207)
16 1ais_B TFB TFIIB, protein (tra 99.8 1.9E-17 6.5E-22 148.8 16.8 182 85-288 7-193 (200)
17 3k7a_M Transcription initiatio 99.4 8.5E-14 2.9E-18 135.4 3.8 179 88-288 127-320 (345)
18 4bbr_M Transcription initiatio 98.5 9E-08 3.1E-12 92.9 5.0 178 88-287 127-319 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 97.8 3E-05 1E-09 73.0 7.7 109 90-210 77-186 (293)
20 1ais_B TFB TFIIB, protein (tra 84.7 1.1 3.7E-05 39.0 5.1 78 104-193 119-197 (200)
21 1c9b_A General transcription f 73.8 21 0.00071 30.8 9.8 86 198-288 8-93 (207)
22 4bbr_M Transcription initiatio 34.8 2.4E+02 0.0083 26.3 10.4 88 196-289 127-215 (345)
23 1zp2_A RNA polymerase II holoe 32.4 2.5E+02 0.0084 24.3 10.7 62 227-288 58-125 (235)
24 2i53_A Cyclin K; cell cycle, t 28.4 79 0.0027 27.9 5.5 50 140-190 195-250 (258)
25 3o0g_D Cyclin-dependent kinase 25.5 23 0.0008 29.1 1.2 78 88-168 28-108 (149)
26 3k7a_M Transcription initiatio 25.0 60 0.002 30.5 4.2 87 197-289 128-215 (345)
27 1unl_D Cyclin-dependent kinase 21.9 34 0.0011 29.5 1.5 112 88-208 73-190 (208)
No 1
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-44 Score=345.99 Aligned_cols=224 Identities=19% Similarity=0.292 Sum_probs=195.3
Q ss_pred CHHHHHHHHHHHhhccCCCCCccccccCCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccC
Q 048738 52 ECEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLS 130 (355)
Q Consensus 52 ~~~e~l~~l~e~E~~~~p~~~yl~~~~q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~ 130 (355)
|.+|++.+|+++|.++.|+++|++.. |+++++.||.++|+||++|+.+ +++.++|+++ |+||||||++. .
T Consensus 37 ~~~~i~~~l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~ev~~~---~~l~~~t~~lAv~~lDRfls~~-----~ 107 (306)
T 3g33_B 37 GDQRVLQSLLRLEERYVPRASYFQCV-QREIKPHMRKMLAYWMLEVCEE---QRCEEEVFPLAMNYLDRYLSCV-----P 107 (306)
T ss_dssp CHHHHHHHHHHHGGGGSCSSCCTTTS-TTTCCHHHHHHHHHHHHHHHHH---TTCCTTHHHHHHHHHHHHHHHC-----C
T ss_pred chHHHHHHHHHHHHHhCCCcHHHhhc-CccCCHHHHHHHHHHHHHHHHH---hCCcHhHHHHHHHHHHHHHhcC-----C
Confidence 67899999999999999999999876 8999999999999999999999 8999999999 99999999999 6
Q ss_pred CccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcC
Q 048738 131 PAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFD 210 (355)
Q Consensus 131 ~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~ 210 (355)
+.+ +++||+|+|||+||+|+||..+|.+.+| +..+++.|++++|++||+.||++|+|+++.|||++||++|+..++
T Consensus 108 v~~---~~lqLv~~tcL~lAsK~eE~~p~~~~~l-~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~ 183 (306)
T 3g33_B 108 TRK---AQLQLLGAVCMLLASKLRETTPLTIEKL-CIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLS 183 (306)
T ss_dssp CCG---GGHHHHHHHHHHHHHHHHCSSCCCTTHH-HHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSS
T ss_pred CcH---HHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcC
Confidence 643 5999999999999999999999999999 778899999999999999999999999999999999999999886
Q ss_pred CcchhhH--HHHHHHHHHHHcccccccCCCHHHHHHHHHHHHHHhhcCC--C----hhHHHHHhcccCcCChhhHHHHHH
Q 048738 211 SLEFHLH--NELTTLHINQTNADARLLKYQPSVVAVSALWCSLDELTAS--S----CAHVAFITRLFNQEQKDDVVRCNM 282 (355)
Q Consensus 211 ~~~~~~~--~~~~~~~ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~~~--w----~~~l~~~s~~~~~~~~e~v~~C~~ 282 (355)
....... ......++..++.++.|+.|+||+||||||++|+..++.. | ...+..++|+ ++++|..|++
T Consensus 184 ~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~----~~~~l~~c~~ 259 (306)
T 3g33_B 184 LPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGT----EVDCLRACQE 259 (306)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTC----CHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCC----CHHHHHHHHH
Confidence 4332111 1111122568999999999999999999999999987643 5 4556677777 4899999999
Q ss_pred HHHHhhhCCC
Q 048738 283 IMKSRLVDPL 292 (355)
Q Consensus 283 ~m~~~~~~~~ 292 (355)
.|.+++.++.
T Consensus 260 ~I~~l~~~~l 269 (306)
T 3g33_B 260 QIEAALRESL 269 (306)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHHH
Confidence 9999987753
No 2
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=4e-44 Score=335.53 Aligned_cols=219 Identities=11% Similarity=0.093 Sum_probs=189.0
Q ss_pred HHHHHHHHHHhhccCCCCCccccccCCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCc
Q 048738 54 EEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPA 132 (355)
Q Consensus 54 ~e~l~~l~e~E~~~~p~~~yl~~~~q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~ 132 (355)
+|++. |+++|.+|.|+++|++.. |+++++.||.++||||++|+.+ +++.++|+|+ |+|+|||+++. .++
T Consensus 21 ~~i~~-l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~~v~~~---~~l~~etl~lAv~~~DRfls~~-----~v~ 90 (254)
T 2f2c_A 21 PRVLN-NLKLRELLLPKFTSLWEI-QTEVTVDNRTILLTWMHLLCES---FELDKSVFPLSVSILDRYLCKK-----QGT 90 (254)
T ss_dssp HHHHH-HHHHHHTTSCCCSSTTTT-CSSCCHHHHHHHHHHHHHHHHH---TTCCTTHHHHHHHHHHHHTTTS-----CCC
T ss_pred HHHHH-HHHHHHhhCCCchhhhhc-CccCCHHHHHHHHHHHHHHHHH---HCCCchHHHHHHHHHHHHHccC-----CcC
Confidence 78999 999999999999999755 8999999999999999999999 7899999999 99999999998 665
Q ss_pred cccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCCc
Q 048738 133 EWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSL 212 (355)
Q Consensus 133 ~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~~ 212 (355)
+ .++||+|+|||+||+|+||..+|.+.+| +..+++.|++++|.+||+.||++|+|+++.|||++||++|++.++..
T Consensus 91 ~---~~lqLv~~acl~iA~K~eE~~~p~~~d~-~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~ 166 (254)
T 2f2c_A 91 K---KTLQKIGAACVLIGSKIRTVKPMTVSKL-TYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIP 166 (254)
T ss_dssp T---TTHHHHHHHHHHHHHHHHCSSCCCHHHH-STTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCC
T ss_pred H---HHccHHHHHHHHHHHHhcccCCCCHHHH-HHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCC
Confidence 4 4899999999999999999999999999 67889999999999999999999999999999999999999988754
Q ss_pred chhhHH-HHHHHH-HHHHcccccccCCCHHHHHHHHHHHHHHhhcCC---C---hhHHHHHhcccCcCChhhHHHHHHHH
Q 048738 213 EFHLHN-ELTTLH-INQTNADARLLKYQPSVVAVSALWCSLDELTAS---S---CAHVAFITRLFNQEQKDDVVRCNMIM 284 (355)
Q Consensus 213 ~~~~~~-~~~~~~-ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~~~---w---~~~l~~~s~~~~~~~~e~v~~C~~~m 284 (355)
...... .....+ +..++.|+.|++|+||+|||||+++|+...... | ...+..++|+ ++++|..|++.|
T Consensus 167 ~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~----~~~~l~~c~~~i 242 (254)
T 2f2c_A 167 EDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNF----STNTVRTVKDQV 242 (254)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTC----CHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCc----CHHHHHHHHHHH
Confidence 322110 112233 558999999999999999999999999986332 5 5667778888 489999999999
Q ss_pred HHhhhC
Q 048738 285 KSRLVD 290 (355)
Q Consensus 285 ~~~~~~ 290 (355)
.+++.+
T Consensus 243 ~~~~~~ 248 (254)
T 2f2c_A 243 SEAFSL 248 (254)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998754
No 3
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=1.3e-44 Score=339.82 Aligned_cols=223 Identities=22% Similarity=0.261 Sum_probs=199.5
Q ss_pred cccCHHHHHHHHHHHhhccCCCCCccccccCCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhccccc
Q 048738 49 TKEECEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTC 127 (355)
Q Consensus 49 ~~e~~~e~l~~l~e~E~~~~p~~~yl~~~~q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~ 127 (355)
+.+|.+||+.+|++.|.++.|+++|++. |+++++.+|.++||||++|+.+ ++++++|+++ |+|+|||++..
T Consensus 3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~--q~~i~~~~R~~lvdwl~~v~~~---~~l~~~tl~lAv~~lDRfls~~--- 74 (260)
T 2cch_B 3 VPDYHEDIHTYLREMEVKCKPKVGYMKK--QPDITNSMRAILVDWLVEVGEE---YKLQNETLHLAVNYIDRFLSSM--- 74 (260)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCTTGGGG--CSSCCHHHHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHHC---
T ss_pred hHhHHHHHHHHHHHHHhhcCCCchhhhc--CCCCCHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHhccC---
Confidence 5689999999999999999999999997 7999999999999999999999 8999999999 99999999999
Q ss_pred ccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHH
Q 048738 128 VLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLT 207 (355)
Q Consensus 128 ~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~ 207 (355)
.+++ .++||+|+|||+||+|+||+.+|.+.+| +..+++.|++++|.+||+.||++|+|+++.|||++||.+|+.
T Consensus 75 --~v~~---~~lqlv~~acl~iA~K~ee~~~~~~~d~-~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~ 148 (260)
T 2cch_B 75 --SVLR---GKLQLVGTAAMLLASKFEEIYPPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFL 148 (260)
T ss_dssp --CCCH---HHHHHHHHHHHHHHHHHHCSSCCCHHHH-HHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHT
T ss_pred --CCCH---HHHhHHHHHHHHHHHHhcccCCCCHHHH-HHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHH
Confidence 6754 4899999999999999999999999999 677889999999999999999999999999999999999999
Q ss_pred hcCCcchhhHHHHHHHH-HHHHccccc-ccCCCHHHHHHHHHHHHHHhhc-CCChhHHHHHhcccCcCChhhHHHHHHHH
Q 048738 208 NFDSLEFHLHNELTTLH-INQTNADAR-LLKYQPSVVAVSALWCSLDELT-ASSCAHVAFITRLFNQEQKDDVVRCNMIM 284 (355)
Q Consensus 208 ~~~~~~~~~~~~~~~~~-ll~sl~d~~-fl~~~PS~IAaAal~~a~~~l~-~~w~~~l~~~s~~~~~~~~e~v~~C~~~m 284 (355)
.++.... ....++.+ +..++.++. |++|+||.|||||+++|...++ +.|...+..++|+. +++|..|++.|
T Consensus 149 ~l~~~~~--~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~g~~----~~~i~~~~~~l 222 (260)
T 2cch_B 149 HQQPANC--KVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYT----LESLKPCLMDL 222 (260)
T ss_dssp TCSSCCH--HHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCC----HHHHHHHHHHH
T ss_pred HcCCChH--HHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHhCcC----HHHHHHHHHHH
Confidence 8874332 22233344 457888999 9999999999999999999876 45988898899984 88999999999
Q ss_pred HHhhhCC
Q 048738 285 KSRLVDP 291 (355)
Q Consensus 285 ~~~~~~~ 291 (355)
.+...++
T Consensus 223 ~~~~~~~ 229 (260)
T 2cch_B 223 HQTYLKA 229 (260)
T ss_dssp HHHHHHG
T ss_pred HHHHHhc
Confidence 9886543
No 4
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3.9e-44 Score=336.16 Aligned_cols=219 Identities=16% Similarity=0.128 Sum_probs=192.8
Q ss_pred HHHHHHHHHHhhccCCCCCccccccCCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCc
Q 048738 54 EEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPA 132 (355)
Q Consensus 54 ~e~l~~l~e~E~~~~p~~~yl~~~~q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~ 132 (355)
+|++ +|+++|.++.|+++|+... |+++++.||.++||||++|+.+ +++.++|+|+ |+|+|||+++. .++
T Consensus 20 ~~i~-~l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~ev~~~---~~l~~etl~lAv~~~DRfls~~-----~v~ 89 (257)
T 1g3n_C 20 RIFY-NILEIEPRFLTSDSVFGTF-QQSLTSHMRKLLGTWMFSVCQE---YNLEPNVVALALNLLDRLLLIK-----QVS 89 (257)
T ss_dssp HHHH-HHHHHGGGGCCCGGGHHHH-TSSCCHHHHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHTTTC-----CCC
T ss_pred HHHH-HHHHHHHHhCCChhHHHhc-CccCCHHHHHHHHHHHHHHHHH---hCCCccHHHHHHHHHHHHHccC-----CCC
Confidence 7899 9999999999999999755 8999999999999999999999 7899999999 99999999998 665
Q ss_pred cccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCCc
Q 048738 133 EWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSL 212 (355)
Q Consensus 133 ~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~~ 212 (355)
+ .++||+|+|||+||+|+||..+|.+.+| +..+++.|++++|.+||+.||++|+|+++.|||++||++|+..++..
T Consensus 90 ~---~~lqLv~~acl~iA~K~eE~~~p~~~d~-~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~ 165 (257)
T 1g3n_C 90 K---EHFQKTGSACLLVASKLRSLTPISTSSL-CYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGG 165 (257)
T ss_dssp H---HHHHHHHHHHHHHHHHHHCSSCCCHHHH-HHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCS
T ss_pred H---HHHHHHHHHHHHHHHHHccccCCCHHHH-HHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCC
Confidence 4 4899999999999999999999999999 67889999999999999999999999999999999999999988754
Q ss_pred chhhHH-HHHHHH-HHHHcccccccCCCHHHHHHHHHHHHHHhhc-------CCChhHHHHHhcccCcCChhhHHHHHHH
Q 048738 213 EFHLHN-ELTTLH-INQTNADARLLKYQPSVVAVSALWCSLDELT-------ASSCAHVAFITRLFNQEQKDDVVRCNMI 283 (355)
Q Consensus 213 ~~~~~~-~~~~~~-ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~-------~~w~~~l~~~s~~~~~~~~e~v~~C~~~ 283 (355)
...... .....+ +..++.|+.|++|+||+|||||+++|+..++ +.|...+..++|+ ++++|..|++.
T Consensus 166 ~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~----~~~~l~~c~~~ 241 (257)
T 1g3n_C 166 SQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGC----DVSVLQAAVEQ 241 (257)
T ss_dssp STTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTC----CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCc----CHHHHHHHHHH
Confidence 322110 112233 5589999999999999999999999998876 3488888888888 48999999999
Q ss_pred HHHhhhC
Q 048738 284 MKSRLVD 290 (355)
Q Consensus 284 m~~~~~~ 290 (355)
|.+++.+
T Consensus 242 i~~l~~~ 248 (257)
T 1g3n_C 242 ILTSVSD 248 (257)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 5
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3.2e-44 Score=336.13 Aligned_cols=216 Identities=11% Similarity=0.067 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHhhccCCCCCccccccCCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCC
Q 048738 53 CEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSP 131 (355)
Q Consensus 53 ~~e~l~~l~e~E~~~~p~~~yl~~~~q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~ 131 (355)
.++++.+|+++|.+|.| .. . |+++++.||.++||||++|+.+ ++++++|+|+ |||+||||++. .+
T Consensus 21 ~d~i~~~l~~~E~~~~p----~~-~-q~~i~~~~R~~lvdWl~ev~~~---~~l~~eT~~lAv~~lDRfLs~~-----~v 86 (252)
T 1f5q_B 21 RQMIYRSEREHDARMVG----VN-V-DQHFTSQYRKVLTTWMFCVCKD---LRQDNNVFPLAVALLDELFLST-----RI 86 (252)
T ss_dssp HHHHHHHHHHHHHHHSS----SS-H-HHHHHCSHHHHHHHHHHHHHHH---TTCCTTHHHHHHHHHHHHHHHS-----CC
T ss_pred HHHHHHHHHHHHHHhCc----Cc-c-CCCCCHHHHHHHHHHHHHHHHH---cCCChHHHHHHHHHHHHHhcCC-----Cc
Confidence 45899999999999998 22 2 6778889999999999999999 7899999999 99999999999 66
Q ss_pred ccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCC
Q 048738 132 AEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDS 211 (355)
Q Consensus 132 ~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~ 211 (355)
++ +++||+|+|||+||+|+||+.+|.+.++ +..+++.|++++|++||+.||++|+|+++.|||++||++|++.++.
T Consensus 87 ~~---~~lqLvg~tcl~iAsK~eE~~p~~~~~l-~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~ 162 (252)
T 1f5q_B 87 DR---ENYQSTAAVALHIAGKVRAYMPIKATQL-AYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHA 162 (252)
T ss_dssp CG---GGHHHHHHHHHHHHHHHHCSSCCCHHHH-HHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTC
T ss_pred CH---HHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCC
Confidence 54 4999999999999999999999999999 7889999999999999999999999999999999999999998864
Q ss_pred cchhhH-HHHHHHH-HHHHcccccccCCCHHHHHHHHHHHHHHhhcCC---ChhHHHHHhcccCcCChhhHHHHHHHHHH
Q 048738 212 LEFHLH-NELTTLH-INQTNADARLLKYQPSVVAVSALWCSLDELTAS---SCAHVAFITRLFNQEQKDDVVRCNMIMKS 286 (355)
Q Consensus 212 ~~~~~~-~~~~~~~-ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~~~---w~~~l~~~s~~~~~~~~e~v~~C~~~m~~ 286 (355)
...... ......+ +..++.|+.|+.|+||+|||||+.+++....+. |...+..++|+ +++++..|++.|.+
T Consensus 163 ~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~~~~~~~~~~~~~L~~~t~~----~~~~l~~C~~~i~~ 238 (252)
T 1f5q_B 163 PREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQKYDYYENRIDGVCKSLYI----TKEELHQCCDLVDI 238 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhccCCCchhhHHHHHHHHHCc----CHHHHHHHHHHHHH
Confidence 322111 1112234 568999999999999999999976666432221 23345556666 58999999999999
Q ss_pred hhhC
Q 048738 287 RLVD 290 (355)
Q Consensus 287 ~~~~ 290 (355)
++.+
T Consensus 239 ~l~~ 242 (252)
T 1f5q_B 239 AIVS 242 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8743
No 6
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=3.8e-43 Score=331.80 Aligned_cols=220 Identities=19% Similarity=0.306 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHhhccCCCCCccccccCCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCC
Q 048738 53 CEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSP 131 (355)
Q Consensus 53 ~~e~l~~l~e~E~~~~p~~~yl~~~~q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~ 131 (355)
.+|++.+|+++|.+|.|+++|+... |+++++.+|.++++||++|+.+ ++++++|+++ |+|+|||+++. .+
T Consensus 24 ~~~i~~~l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lv~wl~~v~~~---~~l~~~tl~lAv~~lDRfls~~-----~v 94 (271)
T 2w96_A 24 NDRVLRAMLKAEETCAPSVSYFKCV-QKEVLPSMRKIVATWMLEVCEE---QKCEEEVFPLAMNYLDRFLSLE-----PV 94 (271)
T ss_dssp -CHHHHHHHHHHHHTCCCTTHHHHT-CSSCCHHHHHHHHHHHHHHHHH---TTCCTTHHHHHHHHHHHHHTTS-----CC
T ss_pred HHHHHHHHHHHHHHhCCCchHHHhc-CCcCCHHHHHHHHHHHHHHHHH---HCCchhHHHHHHHHHHHhCCcC-----Cc
Confidence 4589999999999999999999776 8999999999999999999999 7899999999 99999999999 66
Q ss_pred ccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCC
Q 048738 132 AEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDS 211 (355)
Q Consensus 132 ~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~ 211 (355)
++ ..+||+|+|||+||+|+||+.+|.+.++ +..+++.|++++|.+||+.||++|+|+++.|||++||.+|++.++.
T Consensus 95 ~~---~~lqlv~~acL~iAsK~EE~~p~~~~~~-~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~ 170 (271)
T 2w96_A 95 KK---SRLQLLGATCMFVASKMKETIPLTAEKL-CIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPE 170 (271)
T ss_dssp CT---TTHHHHHHHHHHHHHHHHCSSCCCHHHH-HHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCC
T ss_pred CH---HHHHHHHHHHHHHHHHHhhcCCCCHHHH-HHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCC
Confidence 54 3899999999999999999999999999 6788899999999999999999999999999999999999998874
Q ss_pred cchhhHHHHH---HHH-HHHHcccccccCCCHHHHHHHHHHHHHHhhc------CCCh----hHHHHHhcccCcCChhhH
Q 048738 212 LEFHLHNELT---TLH-INQTNADARLLKYQPSVVAVSALWCSLDELT------ASSC----AHVAFITRLFNQEQKDDV 277 (355)
Q Consensus 212 ~~~~~~~~~~---~~~-ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~------~~w~----~~l~~~s~~~~~~~~e~v 277 (355)
.... ...+ ..+ +..++.|+.|++|+||.||||||++|+..++ +.|. ..+..++|+ ++++|
T Consensus 171 ~~~~--~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v----~~~~l 244 (271)
T 2w96_A 171 AEEN--KQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKC----DPDCL 244 (271)
T ss_dssp CHHH--HHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTS----CHHHH
T ss_pred CchH--HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCc----CHHHH
Confidence 3221 1111 123 5578899999999999999999999998663 2254 345666776 58899
Q ss_pred HHHHHHHHHhhhCC
Q 048738 278 VRCNMIMKSRLVDP 291 (355)
Q Consensus 278 ~~C~~~m~~~~~~~ 291 (355)
..|++.|.+++.+.
T Consensus 245 ~~c~~~i~~l~~~~ 258 (271)
T 2w96_A 245 RACQEQIEALLESS 258 (271)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987654
No 7
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=1.3e-43 Score=334.92 Aligned_cols=219 Identities=17% Similarity=0.235 Sum_probs=193.4
Q ss_pred cccCHHHHHHHHHHHhhccCCCCCccccccCCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhccccc
Q 048738 49 TKEECEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTC 127 (355)
Q Consensus 49 ~~e~~~e~l~~l~e~E~~~~p~~~yl~~~~q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~ 127 (355)
+.||.+|++.+|+++|.++.|+++|++. | ++++.+|.+++|||.+|+.+ ++++++|+++ |+|+|||++..
T Consensus 3 ~~eY~~di~~~l~~~E~~~~~~~~y~~~--q-~i~~~~R~~lv~wl~~v~~~---~~l~~~tl~lAv~~lDRfl~~~--- 73 (269)
T 2b9r_A 3 SSEYVKDIYAYLRQLEAAQAVRPKYLLG--R-EVTGNMRAILIDWLVQVQMK---FRLLQETMYMTVSIIDRFMQNN--- 73 (269)
T ss_dssp ----CCTTTTTHHHHHHTTCCCTTTTSS--S-SSCHHHHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHTTS---
T ss_pred hHHHHHHHHHHHHHHHHhhCCCcccccC--C-CCCHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHhcCC---
Confidence 5689999999999999999999999986 6 99999999999999999999 8899999999 99999999999
Q ss_pred ccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHH
Q 048738 128 VLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLT 207 (355)
Q Consensus 128 ~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~ 207 (355)
.+++ .++||+|+|||+||+|+||..+|.+.+| +..+++.|++++|.+||+.||++|+|+++.|||++||.+|+.
T Consensus 74 --~v~~---~~lqlv~~acL~iA~K~eE~~~p~~~d~-~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~ 147 (269)
T 2b9r_A 74 --SVPK---KMLQLVGVTAMFIASKYEEMYPPEIGDF-AFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASK 147 (269)
T ss_dssp --CCCG---GGHHHHHHHHHHHHHHHHCSSCCCHHHH-HHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHH
T ss_pred --CCcH---HHhhHHHHHHHHHHHhcccccCccHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHH
Confidence 6654 4899999999999999999999999999 678899999999999999999999999999999999999998
Q ss_pred hcCCcchhhHHHHHHHH-HHHHcccccccCCCHHHHHHHHHHHHHHhhcCC-ChhHHHHHhcccCcCChhhHHHHHHHHH
Q 048738 208 NFDSLEFHLHNELTTLH-INQTNADARLLKYQPSVVAVSALWCSLDELTAS-SCAHVAFITRLFNQEQKDDVVRCNMIMK 285 (355)
Q Consensus 208 ~~~~~~~~~~~~~~~~~-ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~~~-w~~~l~~~s~~~~~~~~e~v~~C~~~m~ 285 (355)
..+.+ .. ...+..+ +..++.++.|++|+||.||||||++|+..++.. |...+..++|+. +++|.+|++.|.
T Consensus 148 ~~~~~-~~--~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~tg~~----~~~l~~~~~~l~ 220 (269)
T 2b9r_A 148 IGEVD-VE--QHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHYLSYT----EESLLPVMQHLA 220 (269)
T ss_dssp SSCCC-HH--HHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHHSCCC----SSTTTTHHHHHH
T ss_pred hcCCC-HH--HHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHCCC----HHHHHHHHHHHH
Confidence 77632 21 1223344 568999999999999999999999999988765 998899999985 678999999998
Q ss_pred Hhhh
Q 048738 286 SRLV 289 (355)
Q Consensus 286 ~~~~ 289 (355)
+++.
T Consensus 221 ~~~~ 224 (269)
T 2b9r_A 221 KNVV 224 (269)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.6e-41 Score=322.82 Aligned_cols=215 Identities=21% Similarity=0.295 Sum_probs=187.5
Q ss_pred cCHHHHHHHHHHHhhccCCCCCccccccCCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhc-ccccc
Q 048738 51 EECEEAAIICLEKELSYMPEPGYVEYLDQSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSV-YVTCV 128 (355)
Q Consensus 51 e~~~e~l~~l~e~E~~~~p~~~yl~~~~q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~-~~~~~ 128 (355)
+|.+|++.+|+++|.+|.|+++|++. |+++++.+|.++++||++|+.+ +++.++|+++ |+|+|||++. .
T Consensus 16 ~y~~~i~~~l~~~E~~~~~~~~y~~~--q~~i~~~~R~~lv~wl~~v~~~---~~l~~~tl~lAv~~lDRfls~~~---- 86 (283)
T 1w98_B 16 ANREEVWKIMLNKEKTYLRDQHFLEQ--HPLLQPKMRAILLDWLMEVCEV---YKLHRETFYLAQDFFDRYMATQE---- 86 (283)
T ss_dssp SCHHHHHHHHHHHTTTSCCCTTGGGG--CTTCCHHHHHHHHHHHHHHHHH---TTCBHHHHHHHHHHHHHHHHHCC----
T ss_pred cCHHHHHHHHHHHHHHhCCCchhhcc--CCCCCHHHHHHHHHHHHHHHHH---hCCCccHHHHHHHHHHHHHHhCC----
Confidence 78999999999999999999999987 8999999999999999999999 7899999999 9999999998 4
Q ss_pred cCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHh
Q 048738 129 LSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTN 208 (355)
Q Consensus 129 ~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~ 208 (355)
.+. .+++||+|+|||+||+|+||..+|.+.+| +..+++.|++++|.+||+.||++|+|+++.|||++||++|+..
T Consensus 87 -~v~---~~~lqlv~~acL~iA~K~eE~~~p~l~~~-~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~ 161 (283)
T 1w98_B 87 -NVV---KTLLQLIGISSLFIAAKLEEIYPPKLHQF-AYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQV 161 (283)
T ss_dssp -CCC---GGGHHHHHHHHHHHHHHHHCSSCCCHHHH-HHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHH
T ss_pred -CCC---HHHHHHHHHHHHHHHHHhcccCCCcHHHH-HHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHH
Confidence 443 36999999999999999999999999999 6788899999999999999999999999999999999999987
Q ss_pred cCCcchh-------hHHHHH-HHH-HHHHcccccccCCCHHHHHHHHHHHHHHhhcCCChhHHHHHhcccCcCChhhHHH
Q 048738 209 FDSLEFH-------LHNELT-TLH-INQTNADARLLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDDVVR 279 (355)
Q Consensus 209 ~~~~~~~-------~~~~~~-~~~-ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~~~w~~~l~~~s~~~~~~~~e~v~~ 279 (355)
++..+.. ....+. ..+ ++.++.|+.|++|+||+||||||++|. |...+..++|+ ++++|..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~------~~~~l~~~tg~----~~~~i~~ 231 (283)
T 1w98_B 162 AYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS------SSELMQKVSGY----QWCDIEN 231 (283)
T ss_dssp HTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS------CHHHHHHHSCC----CHHHHHH
T ss_pred hccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH------ChHHHHHHhCC----CHHHHHH
Confidence 7533211 112222 223 458899999999999999999999985 45567777887 4889999
Q ss_pred HHHHHHHhhh
Q 048738 280 CNMIMKSRLV 289 (355)
Q Consensus 280 C~~~m~~~~~ 289 (355)
|++.|..+..
T Consensus 232 c~~~l~~~~~ 241 (283)
T 1w98_B 232 CVKWMVPFAM 241 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.97 E-value=1.3e-31 Score=250.51 Aligned_cols=199 Identities=12% Similarity=0.160 Sum_probs=156.7
Q ss_pred CCCCcHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCC
Q 048738 79 QSNNLPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTS 157 (355)
Q Consensus 79 q~~i~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~ 157 (355)
+.+....+|..+++||.+|+.+ ++++++|+++ ++|||||+++. .+.+ ..+|++|+|||+||+|+||.
T Consensus 33 ~~~~e~~~R~~~~~~i~~v~~~---l~l~~~t~~~A~~~~dRf~~~~-----~~~~---~~~qlv~~acL~lA~K~eE~- 100 (258)
T 2i53_A 33 DPATEARYRREGARFIFDVGTR---LGLHYDTLATGIIYFHRFYMFH-----SFKQ---FPRYVTGACCLFLAGKVEET- 100 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHTTTS-----CTTT---SCHHHHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHH---cCCChHHHHHHHHHHHHHHHhC-----Chhh---cCHHHHHHHHHHHHHccccc-
Confidence 4455678999999999999999 8999999999 99999999998 6654 48999999999999999995
Q ss_pred CCcccchhhhh-----ccCcc------cHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCCcchhh-HHHHHHHH-
Q 048738 158 SPSLHEIQMEE-----LDYSF------QSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHL-HNELTTLH- 224 (355)
Q Consensus 158 ~p~l~dl~v~~-----~~~~f------~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~~~~~~-~~~~~~~~- 224 (355)
++.+.++ +.. .++.| ++++|.+||+.||++|+|+++.|||++||..|++.++...... .....+.+
T Consensus 101 ~~~l~d~-~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l 179 (258)
T 2i53_A 101 PKKCKDI-IKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTF 179 (258)
T ss_dssp CCCHHHH-HHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHH
T ss_pred cccHHHH-HHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 7888998 332 23334 4889999999999999999999999999999999887532111 11112223
Q ss_pred HHHHcccccccCCCHHHHHHHHHHHHHHhhcC---CChhH---HHHHhcccCcCChhhHHHHHHHHHHhhhC
Q 048738 225 INQTNADARLLKYQPSVVAVSALWCSLDELTA---SSCAH---VAFITRLFNQEQKDDVVRCNMIMKSRLVD 290 (355)
Q Consensus 225 ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~~---~w~~~---l~~~s~~~~~~~~e~v~~C~~~m~~~~~~ 290 (355)
+..++.+..++.|+||.||+|||++|...++. .|... ..++..+...+++++|..|++.|.++...
T Consensus 180 ~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~ 251 (258)
T 2i53_A 180 VNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQ 251 (258)
T ss_dssp HHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSS
T ss_pred HHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhc
Confidence 55889999999999999999999999997653 24321 12333332346799999999988877643
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.97 E-value=2.9e-30 Score=241.52 Aligned_cols=192 Identities=13% Similarity=0.066 Sum_probs=149.6
Q ss_pred cHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcc
Q 048738 83 LPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSL 161 (355)
Q Consensus 83 ~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l 161 (355)
...+|..+++||.+|+.+ ++++++|+++ ++|||||++.. .+.+ .++|++|+|||+||+|+||+ +|.+
T Consensus 27 e~~~R~~~~~~i~~v~~~---l~l~~~t~~~A~~~~dRf~~~~-----~~~~---~~~qlv~~acL~lA~K~EE~-p~~l 94 (257)
T 2ivx_A 27 ELSCRQQAANLIQEMGQR---LNVSQLTINTAIVYMHRFYMHH-----SFTK---FNKNIISSTALFLAAKVEEQ-ARKL 94 (257)
T ss_dssp HHHHHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHTTTS-----CTTT---SCHHHHHHHHHHHHHHHTTC-CCCH
T ss_pred HHHHHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHHHHhhC-----Chhh---hCHHHHHHHHHHHHhccccC-CcCH
Confidence 357999999999999999 8999999999 99999999998 6654 48999999999999999999 8889
Q ss_pred cchhhhh--------------ccCccc--HHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCCcchhhHHHHHHHH-
Q 048738 162 HEIQMEE--------------LDYSFQ--SSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLH- 224 (355)
Q Consensus 162 ~dl~v~~--------------~~~~f~--~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~~~~~~~~~~~~~~- 224 (355)
.++ +.. .+..|+ +++|.+||+.||++|+|+++.|||+.||..|++.++... .. ...+.+
T Consensus 95 ~d~-~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~-~~--~~~A~~~ 170 (257)
T 2ivx_A 95 EHV-IKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASK-DL--AQTSYFM 170 (257)
T ss_dssp HHH-HHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCH-HH--HHHHHHH
T ss_pred HHH-HHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCc-HH--HHHHHHH
Confidence 998 322 234455 999999999999999999999999999999999887432 11 122223
Q ss_pred HHHHcc-cccccCCCHHHHHHHHHHHHHHhhcCC---ChhHHHHHhcccCcCChhhHHHHHHHHHHhhhC
Q 048738 225 INQTNA-DARLLKYQPSVVAVSALWCSLDELTAS---SCAHVAFITRLFNQEQKDDVVRCNMIMKSRLVD 290 (355)
Q Consensus 225 ll~sl~-d~~fl~~~PS~IAaAal~~a~~~l~~~---w~~~l~~~s~~~~~~~~e~v~~C~~~m~~~~~~ 290 (355)
+..++. +..++.|+||.||+|||++|...++.. +.....++..+-..+++++|.+|++.|.+....
T Consensus 171 ~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~~~~ 240 (257)
T 2ivx_A 171 ATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEK 240 (257)
T ss_dssp HHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 446664 445899999999999999999876521 100001122222235789999999988887644
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.96 E-value=2.9e-29 Score=238.62 Aligned_cols=187 Identities=13% Similarity=0.131 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCccc
Q 048738 84 PHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLH 162 (355)
Q Consensus 84 ~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~ 162 (355)
..+|..+++||.+|+.. ++|.++|+++ ++|||||++.. .+.+ .++|++|+|||+||+|+||+.+|.+.
T Consensus 40 ~~~R~~~~~~I~~v~~~---l~L~~~t~~tA~~~~~RF~~~~-----s~~~---~~~~lva~acLfLA~K~EE~~~~~~~ 108 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEH---LKLRQQVIATATVYFKRFYARY-----SLKS---IDPVLMAPTCVFLASKVEEFGVVSNT 108 (285)
T ss_dssp HHHHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHHS-----CTTT---SCHHHHHHHHHHHHHHHTTSCCCCHH
T ss_pred HHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHhC-----Cchh---cCHHHHHHHHHHHHHhhhccccccHH
Confidence 46999999999999999 8999999999 99999999999 6654 48899999999999999999999888
Q ss_pred chhhhh--------------ccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCCcchhhHHHHHHHHHHHH
Q 048738 163 EIQMEE--------------LDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLHINQT 228 (355)
Q Consensus 163 dl~v~~--------------~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~~~~~~~~~~~~~~ll~s 228 (355)
++ +.. ..+.|++++|++||+.||++|+|+++.+||+.||..|++.++... ........++..+
T Consensus 109 di-~~~~~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~--~~~~~A~~~l~~s 185 (285)
T 3rgf_B 109 RL-IAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQED--MLLPLAWRIVNDT 185 (285)
T ss_dssp HH-HHHHHHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHH--HHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCH--HHHHHHHHHHHHH
Confidence 87 322 234589999999999999999999999999999999999987422 1112222235688
Q ss_pred cccccccCCCHHHHHHHHHHHHHHhhcCCChhHHHHHhcccCcCChhhHHHHHHHHHHhhh
Q 048738 229 NADARLLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDDVVRCNMIMKSRLV 289 (355)
Q Consensus 229 l~d~~fl~~~PS~IAaAal~~a~~~l~~~w~~~l~~~s~~~~~~~~e~v~~C~~~m~~~~~ 289 (355)
+.+..++.|+||.||+|||++|...++..- -.++..+ .++.++|.+|.+.|.++..
T Consensus 186 l~t~~~l~~~Ps~IAaAaiylA~~~~~~~~---~~W~~~~--~~~~~~l~~~~~~il~ly~ 241 (285)
T 3rgf_B 186 YRTDLCLLYPPFMIALACLHVACVVQQKDA---RQWFAEL--SVDMEKILEIIRVILKLYE 241 (285)
T ss_dssp TTSSHHHHSCHHHHHHHHHHHHHHHTTCCC---HHHHHTS--CSCHHHHHHHHHHHHHHHH
T ss_pred HccChhhccCHHHHHHHHHHHHHHHcCCCh---hhHHHHH--CCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999776431 1223332 2678999999998887653
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.8e-29 Score=232.11 Aligned_cols=187 Identities=14% Similarity=0.085 Sum_probs=150.5
Q ss_pred HHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccch
Q 048738 86 FRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEI 164 (355)
Q Consensus 86 ~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl 164 (355)
.|..+++||.+|+.. +++.++|+++ ++|||||++.. .+.+ ...+|++|+|||+||+|+||. ++.+.++
T Consensus 27 ~R~~~~~~i~~v~~~---l~L~~~t~~~A~~~~~Rf~~~~-----~~~~--~~~~~lv~~acL~lA~K~Ee~-~~~l~d~ 95 (235)
T 1zp2_A 27 DTIYQWKVVQTFGDR---LRLRQRVLATAIVLLRRYMLKK-----NEEK--GFSLEALVATCIYLSCKVEEC-PVHIRTI 95 (235)
T ss_dssp HHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHHC-----CSCC--CCCHHHHHHHHHHHHHHHTTC-CCCHHHH
T ss_pred HHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHhc-----cccc--ccCHHHHHHHHHHHHhccccC-cccHHHH
Confidence 399999999999999 8999999999 99999999998 6654 148899999999999999995 6788898
Q ss_pred hhhhcc------CcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcccccccCCC
Q 048738 165 QMEELD------YSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLHINQTNADARLLKYQ 238 (355)
Q Consensus 165 ~v~~~~------~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~~~~~~~~~~~~~~ll~sl~d~~fl~~~ 238 (355)
+..++ +.+++++|.+||+.||++|+|++..|||+.||..|++.++... .. .......+..++.+..++.|+
T Consensus 96 -~~~~~~~~~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~-~~-~~~A~~~l~~s~~~~~~l~~~ 172 (235)
T 1zp2_A 96 -CNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQ-KQ-LEFAWSIVNDSYASSLCLMAH 172 (235)
T ss_dssp -HHHHHTTCCCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCH-HH-HHHHHHHHHHHTTTTGGGTSC
T ss_pred -HHHHHHHccchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCH-HH-HHHHHHHHHHHHcCCchhccC
Confidence 55543 3689999999999999999999999999999999999875321 11 112222356889999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCChhHHHHHhcccCcCChhhHHHHHHHHHHhhhC
Q 048738 239 PSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDDVVRCNMIMKSRLVD 290 (355)
Q Consensus 239 PS~IAaAal~~a~~~l~~~w~~~l~~~s~~~~~~~~e~v~~C~~~m~~~~~~ 290 (355)
||.||||||++|....+...+....++. .+++++|..|++.|.++...
T Consensus 173 Ps~IAaAai~lA~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~i~~ly~~ 220 (235)
T 1zp2_A 173 PHQLAYAALLISCCNDENTIPKLLDLIK----STDAFKVILCVQRIISIYYF 220 (235)
T ss_dssp HHHHHHHHHHHHHTSCTTHHHHHHHHCC----HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCcchhh----cCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999876532111112222 34689999999999987643
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.96 E-value=2e-29 Score=246.83 Aligned_cols=185 Identities=15% Similarity=0.069 Sum_probs=147.9
Q ss_pred cHHHHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcc
Q 048738 83 LPHFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSL 161 (355)
Q Consensus 83 ~~~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l 161 (355)
...+|..+++||.+|+.. ++|.++|+++ ++|||||++.. .+.+ +++|++|+||||||+|+||+ ++.+
T Consensus 34 E~~~R~~~v~wI~ev~~~---l~L~~~t~~tAv~~~dRFl~~~-----sv~~---~~~qlva~acLfLA~K~EE~-p~~l 101 (358)
T 2pk2_A 34 ELSYRQQAANLLQDMGQR---LNVSQLTINTAIVYMHRFYMIQ-----SFTR---FPGNSVAPAALFLAAKVEEQ-PKKL 101 (358)
T ss_dssp HHHHHHHHHHHHHHHHTT---TTCCHHHHHHHHHHHHHHTTTS-----CTTT---SCHHHHHHHHHHHHHHHTTC-CCCH
T ss_pred HHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHhcC-----Cccc---ccHHHHHHHHHHHHHhhccC-CCCH
Confidence 457999999999999999 8999999999 99999999998 6654 48999999999999999999 7888
Q ss_pred cchhhhhc--------------cCccc--HHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCCcchhhHHHHHHHH-
Q 048738 162 HEIQMEEL--------------DYSFQ--SSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLH- 224 (355)
Q Consensus 162 ~dl~v~~~--------------~~~f~--~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~~~~~~~~~~~~~~- 224 (355)
.++ +..+ +..|+ +++|++||+.||++|+|++.+|||+.||..|++.++... .. ...+.+
T Consensus 102 ~d~-v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~-~l--~~~A~~l 177 (358)
T 2pk2_A 102 EHV-IKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASK-DL--AQTSYFM 177 (358)
T ss_dssp HHH-HTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCH-HH--HHHHHHH
T ss_pred HHH-HHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCH-HH--HHHHHHH
Confidence 888 3321 23454 899999999999999999999999999999999886432 11 122223
Q ss_pred HHHHcc-cccccCCCHHHHHHHHHHHHHHhhcC---------CChhHHHHHhcccCcCChhhHHHHHHHHHHhhh
Q 048738 225 INQTNA-DARLLKYQPSVVAVSALWCSLDELTA---------SSCAHVAFITRLFNQEQKDDVVRCNMIMKSRLV 289 (355)
Q Consensus 225 ll~sl~-d~~fl~~~PS~IAaAal~~a~~~l~~---------~w~~~l~~~s~~~~~~~~e~v~~C~~~m~~~~~ 289 (355)
+..++. +..++.|+||.||||||++|...++. .|.. .+-..+.+++|.+|++.|.+++.
T Consensus 178 l~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~------~~~~~vt~~~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 178 ATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWE------YVDATVTLELLDELTHEFLQILE 246 (358)
T ss_dssp HHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTT------TSCSSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHH------HHhccCCHHHHHHHHHHHHHHHH
Confidence 446775 44489999999999999999997641 2432 22223578999999888877654
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.95 E-value=3.1e-27 Score=228.39 Aligned_cols=222 Identities=15% Similarity=0.117 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHhccccccccc--cccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCc
Q 048738 84 PHFRFRAIQWLIKVPIPYVLIS--YSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPS 160 (355)
Q Consensus 84 ~~~R~~lvdWi~~V~~~y~~~~--l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~ 160 (355)
..+|...++||.+|+.. ++ |.++|+++ ++|||||++.. .+.+ +.+|++|+|||+||+|+||+. +.
T Consensus 54 ~~lr~~~~~~I~ev~~~---l~~~Lp~~t~~tA~~~~~RF~~~~-----s~~~---~~~~lva~acLfLA~K~EE~~-~~ 121 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSV---FKPAMPRSVVGTACMYFKRFYLNN-----SVME---YHPRIIMLTCAFLACKVDEFN-VS 121 (323)
T ss_dssp HHHHHHHHHHHHHHHHH---CTTTCCHHHHHHHHHHHHHHGGGS-----CTTT---SCHHHHHHHHHHHHHHHTTCC-CC
T ss_pred HHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHhhhC-----Chhh---cCHHHHHHHHHHHHHhhhcCC-CC
Confidence 46899999999999999 78 99999999 99999999998 6654 489999999999999999994 67
Q ss_pred ccchhhhhccC-----cccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcC-----CcchhhHHHHHHHHHHHHcc
Q 048738 161 LHEIQMEELDY-----SFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFD-----SLEFHLHNELTTLHINQTNA 230 (355)
Q Consensus 161 l~dl~v~~~~~-----~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~-----~~~~~~~~~~~~~~ll~sl~ 230 (355)
+.+| +..... .|++++|++||+.||++|+|++.++||+.||..|+..+. ...+.......+.++..++.
T Consensus 122 l~d~-v~~~~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~ 200 (323)
T 1jkw_A 122 SPQF-VGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIAL 200 (323)
T ss_dssp HHHH-GGGSSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHH-HHHhccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 8888 544432 477899999999999999999999999999999987652 11111111122233668888
Q ss_pred cccccCCCHHHHHHHHHHHHHHhhcC---CChhHHHHHhcccCcCChhhHHHHHHHHHHhhhCCCccccccCCCCCCCCC
Q 048738 231 DARLLKYQPSVVAVSALWCSLDELTA---SSCAHVAFITRLFNQEQKDDVVRCNMIMKSRLVDPLSNLIVCGQPYSNWPS 307 (355)
Q Consensus 231 d~~fl~~~PS~IAaAal~~a~~~l~~---~w~~~l~~~s~~~~~~~~e~v~~C~~~m~~~~~~~~~~~~~~~~~~~~~p~ 307 (355)
+..++.|+||.||||||++|...++. .|...+..+.+ .....++|..|.+.|..+.... ..++.
T Consensus 201 t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~--~~~~~~~l~~~~~~i~~l~~~~-----------~~~~~ 267 (323)
T 1jkw_A 201 TDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKE--NRTCLSQLLDIMKSMRNLVKKY-----------EPPRS 267 (323)
T ss_dssp STHHHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCS--SSCCTHHHHHHHHHHHHHHHTC-----------CCCCH
T ss_pred ccHHHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--ccccHHHHHHHHHHHHHHHHcc-----------CCCCH
Confidence 89999999999999999999987653 46554322200 1235788888888887765331 11222
Q ss_pred Cccccccc--ccccccccccchhhhh
Q 048738 308 SPVTVLLR--ERIDIYDCQVDLSIFN 331 (355)
Q Consensus 308 spv~Vl~~--~~~~~~d~~~~~~~~~ 331 (355)
.-+..++. ..|.+.+-..+-..++
T Consensus 268 ~~~k~i~~KL~~c~~p~~~~~~~~~~ 293 (323)
T 1jkw_A 268 EEVAVLKQKLDRCHSAELALNVITKK 293 (323)
T ss_dssp HHHHHHHHHHHHHHHSCSCC------
T ss_pred HHHHHHHHHHHHHhChhcCCcHHHHH
Confidence 34444444 4577665444434444
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.87 E-value=1.6e-21 Score=176.49 Aligned_cols=182 Identities=14% Similarity=0.118 Sum_probs=150.2
Q ss_pred HHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccch
Q 048738 86 FRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEI 164 (355)
Q Consensus 86 ~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl 164 (355)
......+||.+++.. +++++.|+.. ++|++||+... .+.+ ...+++++|||+||+|+||. ++++.|+
T Consensus 4 ~l~~a~~~I~~~~~~---L~L~~~v~~~A~~~~~r~~~~~-----~~~~---~~~~~v~aaclylAcK~ee~-p~~l~di 71 (207)
T 1c9b_A 4 AMMNAFKEITTMADR---INLPRNIVDRTNNLFKQVYEQK-----SLKG---RANDAIASACLYIACRQEGV-PRTFKEI 71 (207)
T ss_dssp GHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHHT-----CSTT---SCHHHHHHHHHHHHHHHTTC-CCCHHHH
T ss_pred HHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHhcC-----CcCC---CCHHHHHHHHHHHHHHhcCC-CCCHHHH
Confidence 456789999999999 8999999999 99999999998 5643 37899999999999999998 6889999
Q ss_pred hhhhccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcCCcchhhHHHHHHHH-HHHHcccccccCCCHHHHH
Q 048738 165 QMEELDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFDSLEFHLHNELTTLH-INQTNADARLLKYQPSVVA 243 (355)
Q Consensus 165 ~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~~~~~~~~~~~~~~~-ll~sl~d~~fl~~~PS~IA 243 (355)
+..++ ++.++|.+||+.||++|+|++..++|+.||..|...++.... . .. .+.+ +..++.+.-+++|+|+.||
T Consensus 72 -~~~~~--~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~-~-~~-~A~~i~~~~~~~~l~~g~~P~~IA 145 (207)
T 1c9b_A 72 -CAVSR--ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQ-V-QM-AATHIARKAVELDLVPGRSPISVA 145 (207)
T ss_dssp -HHTSS--SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHH-H-HH-HHHHHHHHHHHTTCSTTCCHHHHH
T ss_pred -HHHHC--CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHH-H-HH-HHHHHHHHHHHcCccCCCChHHHH
Confidence 55554 899999999999999999999999999999999999875321 1 11 2233 3456666678999999999
Q ss_pred HHHHHHHHHhhcCC-ChhHHHHHhcccCcCChhhHHHHHHHHHHhhh
Q 048738 244 VSALWCSLDELTAS-SCAHVAFITRLFNQEQKDDVVRCNMIMKSRLV 289 (355)
Q Consensus 244 aAal~~a~~~l~~~-w~~~l~~~s~~~~~~~~e~v~~C~~~m~~~~~ 289 (355)
||||++|....+.. |...+...+++ .++.|..|++.|.+.+.
T Consensus 146 aAaiylA~~~~~~~~~~~~i~~~~~v----~~~tI~~~~~~l~~~l~ 188 (207)
T 1c9b_A 146 AAAIYMASQASAEKRTQKEIGDIAGV----ADVTIRQSYRLIYPRAP 188 (207)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHTC----CHHHHHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHhCC----CHHHHHHHHHHHHHHHH
Confidence 99999999987654 55556666666 47889999999887653
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.76 E-value=1.9e-17 Score=148.76 Aligned_cols=182 Identities=14% Similarity=0.080 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccc
Q 048738 85 HFRFRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHE 163 (355)
Q Consensus 85 ~~R~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~d 163 (355)
+....+.++|.+++.. +++++.+... ..|++||+... .+.. ...+.++++||++|+|.|| .+.++.|
T Consensus 7 r~l~~a~~~I~~~~~~---L~L~~~v~~~A~~l~~~~~~~~-----~~~g---r~~~~vaaAclylAcr~~~-~p~~l~d 74 (200)
T 1ais_B 7 RNLAFALSELDRITAQ---LKLPRHVEEEAARLYREAVRKG-----LIRG---RSIESVMAACVYAACRLLK-VPRTLDE 74 (200)
T ss_dssp -CHHHHHHHHHHHHHH---HTCCHHHHHHHHHHHHHHHTTT-----TTTT---CCHHHHHHHHHHHHHHHHT-CCCCHHH
T ss_pred HHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHhCC-----CcCC---CCHHHHHHHHHHHHHHHcC-CCCCHHH
Confidence 3456889999999999 8999999999 99999999987 4533 3679999999999999999 5688899
Q ss_pred hhhhhccCcccHHHHHHHHHHHHHHcCCcccC--cChHHHHHHHHHhcCCcchhhHHHHHHHHH-HHHcccccccCCCHH
Q 048738 164 IQMEELDYSFQSSTIRRMELTLLQSLGWRLGC--ITTYSYVELLLTNFDSLEFHLHNELTTLHI-NQTNADARLLKYQPS 240 (355)
Q Consensus 164 l~v~~~~~~f~~~~I~~ME~~IL~~L~w~l~~--pTp~~FL~~fl~~~~~~~~~~~~~~~~~~l-l~sl~d~~fl~~~PS 240 (355)
+ ...++ ++.++|.++++.|++.|+|++.. ++|..||..|...++.... . . ..+.+| ..+..+..+.+++|+
T Consensus 75 i-~~~~~--v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~-v-~-~~A~~i~~~~~~~~~~~gr~P~ 148 (200)
T 1ais_B 75 I-ADIAR--VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEK-V-R-RRAIEILDEAYKRGLTSGKSPA 148 (200)
T ss_dssp H-HHHTT--SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHH-H-H-HHHHHHHHHHHHTTCCTTSCHH
T ss_pred H-HHHHC--CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHH-H-H-HHHHHHHHHHHHcCcccCCCHH
Confidence 8 44443 78999999999999999999999 9999999999999875322 1 1 122233 466667778999999
Q ss_pred HHHHHHHHHHHHhhcCC-ChhHHHHHhcccCcCChhhHHHHHHHHHHhh
Q 048738 241 VVAVSALWCSLDELTAS-SCAHVAFITRLFNQEQKDDVVRCNMIMKSRL 288 (355)
Q Consensus 241 ~IAaAal~~a~~~l~~~-w~~~l~~~s~~~~~~~~e~v~~C~~~m~~~~ 288 (355)
.||||||++|....+.. |...+...++. .+..|..|++.|.+.+
T Consensus 149 ~iAaAaly~A~~~~~~~~t~~ei~~~~~v----s~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 149 GLVAAALYIASLLEGEKRTQREVAEVARV----TEVTVRNRYKELVEKL 193 (200)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHTC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHhCC----CHHHHHHHHHHHHHHc
Confidence 99999999999877644 76677777776 4788999999998876
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.40 E-value=8.5e-14 Score=135.40 Aligned_cols=179 Identities=8% Similarity=0.038 Sum_probs=74.8
Q ss_pred HHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhh
Q 048738 88 FRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQM 166 (355)
Q Consensus 88 ~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v 166 (355)
..+...|-.++.. ++|+..+.-. ..|+.|++... .+.. ...+.+++|||+||+|.|++ +.++.++ .
T Consensus 127 ~~a~~~I~~~~~~---L~Lp~~v~d~A~~lyk~~~~~~-----~~kg---r~~~~vaaAclyiAcR~e~~-prtl~ei-~ 193 (345)
T 3k7a_M 127 QAAFAKITMLCDA---AELPKIVKDCAKEAYKLCHDEK-----TLKG---KSMESIMAASILIGCRRAEV-ARTFKEI-Q 193 (345)
T ss_dssp HHHHHHHHHHHHH---TTCCHHHHTHHHHHHHHHSSSC-----SSCC---CCSHHHHTTTTTTTSBTTBS-SCCHHHH-H
T ss_pred HHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHhcC-----cccC---CcHHHHHHHHHHHHHHHcCC-CccHHHH-H
Confidence 4667888889999 8899888888 99999999887 5533 37799999999999999887 6888998 4
Q ss_pred hhccCcccHHHHHHHHHHHHHHcC------------CcccCcChHHHHHHHHHhcCCcchhhHHHHHHHHH-HHHccccc
Q 048738 167 EELDYSFQSSTIRRMELTLLQSLG------------WRLGCITTYSYVELLLTNFDSLEFHLHNELTTLHI-NQTNADAR 233 (355)
Q Consensus 167 ~~~~~~f~~~~I~~ME~~IL~~L~------------w~l~~pTp~~FL~~fl~~~~~~~~~~~~~~~~~~l-l~sl~d~~ 233 (355)
..++ +++++|.++++.|++.|+ +.+..++|..||..|...++.... . ...+.+| ..+..+.-
T Consensus 194 ~~~~--v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~-v--~~~A~~i~~~~~~~~l 268 (345)
T 3k7a_M 194 SLIH--VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ-V--TTSAEYTAKKCKEIKE 268 (345)
T ss_dssp HSSS--CCSHHHHHHHHHHHHHHTCC------------------------------------------------------
T ss_pred HHHC--CCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHH-H--HHHHHHHHHHHHHhch
Confidence 5443 889999999999999999 999999999999999999875321 1 1122233 46666667
Q ss_pred ccCCCHHHHHHHHHHHHHHhhcCC-ChhHHHHHhcccCcCChhhHHHHHHHHHHhh
Q 048738 234 LLKYQPSVVAVSALWCSLDELTAS-SCAHVAFITRLFNQEQKDDVVRCNMIMKSRL 288 (355)
Q Consensus 234 fl~~~PS~IAaAal~~a~~~l~~~-w~~~l~~~s~~~~~~~~e~v~~C~~~m~~~~ 288 (355)
+.+++|+.|||||||+|....+.. |...+....+.. +.-|+.+|+.|.+..
T Consensus 269 ~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vs----e~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 269 IAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVT----EGTIKSGYKILYEHR 320 (345)
T ss_dssp --------------------------------------------------------
T ss_pred hcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC----HHHHHHHHHHHHHHH
Confidence 889999999999999999876533 444444444543 455778888777653
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.47 E-value=9e-08 Score=92.87 Aligned_cols=178 Identities=8% Similarity=0.046 Sum_probs=68.5
Q ss_pred HHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhh
Q 048738 88 FRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQM 166 (355)
Q Consensus 88 ~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v 166 (355)
..+...|-+++.. ++|+..+.-. ..++.++.... .+.. .....++++||+||+|.++. +-++.++ .
T Consensus 127 ~~a~~~I~~~~~~---L~Lp~~v~d~A~~lyk~a~~~~-----~~rG---rs~e~vaAAclYiACR~~~~-prtl~eI-~ 193 (345)
T 4bbr_M 127 QAAFAKITMLCDA---AELPKIVKDCAKEAYKLCHDEK-----TLKG---KSMESIMAASILIGCRRAEV-ARTFKEI-Q 193 (345)
T ss_dssp THHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHTTCT-----TTTT---CCHHHHHHHHHHHHHHHTCC-BCCHHHH-H
T ss_pred HHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHhcC-----CccC---CCHHHHHHHHHHHHHHhcCC-CccHHHH-H
Confidence 3456677788888 8888888888 99999998876 4432 25789999999999999875 4677887 3
Q ss_pred hhccCcccHHHHHHHHHHHHHHcCCc------------ccCcChHHHHHHHHHhcCCcchhhHHHHHHHHHH-HHccccc
Q 048738 167 EELDYSFQSSTIRRMELTLLQSLGWR------------LGCITTYSYVELLLTNFDSLEFHLHNELTTLHIN-QTNADAR 233 (355)
Q Consensus 167 ~~~~~~f~~~~I~~ME~~IL~~L~w~------------l~~pTp~~FL~~fl~~~~~~~~~~~~~~~~~~ll-~sl~d~~ 233 (355)
... ..++++|.+..+.|.+.|+.. +..+.|.+|+..|...++.... . ...+..|. .+..+.-
T Consensus 194 ~~~--~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~-v--~~~A~~i~~~~~~~~i 268 (345)
T 4bbr_M 194 SLI--HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ-V--TTSAEYTAKKCKEIKE 268 (345)
T ss_dssp HHH--TCCTTHHHHHHHHHHHCC---------------------------------------------------------
T ss_pred HHh--CCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHH-H--HHHHHHHHHHHHhccc
Confidence 433 367899999999999999974 7778999999999998875321 1 11222344 3333344
Q ss_pred ccCCCHHHHHHHHHHHHHHhhcCC-ChhHHHHHhcccCcCChhhHHHHHHHHHHh
Q 048738 234 LLKYQPSVVAVSALWCSLDELTAS-SCAHVAFITRLFNQEQKDDVVRCNMIMKSR 287 (355)
Q Consensus 234 fl~~~PS~IAaAal~~a~~~l~~~-w~~~l~~~s~~~~~~~~e~v~~C~~~m~~~ 287 (355)
..+.+|+.|||||||+|....+.. ....+....+.. +.-|+..|+.|.+.
T Consensus 269 ~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vs----e~TIr~rykel~~~ 319 (345)
T 4bbr_M 269 IAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVT----EGTIKSGYKILYEH 319 (345)
T ss_dssp -------------------------------------------------------
T ss_pred ccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCC----HHHHHHHHHHHHHH
Confidence 578999999999999998765422 111222233332 33455555555544
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.84 E-value=3e-05 Score=73.04 Aligned_cols=109 Identities=11% Similarity=0.073 Sum_probs=83.0
Q ss_pred HHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhh
Q 048738 90 AIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEE 168 (355)
Q Consensus 90 lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~ 168 (355)
+-+|+.++..+ .+++.+++.. ..|+||+....+ .+.. .+....-+-++||.+|+|+-+-....-..+. ..
T Consensus 77 I~~Yl~RI~k~---t~ls~~~ll~ALvYLdRL~~~~p----~~~l-~~~nvHRLlLtALmlAsK~ldD~~ysN~~wA-kV 147 (293)
T 2pmi_B 77 IFNYFIRLTKF---SSLEHCVLMTSLYYIDLLQTVYP----DFTL-NSLTAHRFLLTATTVATKGLCDSFSTNAHYA-KV 147 (293)
T ss_dssp HHHHHHHHHHT---TTCCHHHHHHHHHHHHHHHHHCT----TCCC-STTTHHHHHHHHHHHHHHHHCSSCCCHHHHH-HH
T ss_pred HHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHhhCC----CCcc-CCchHHHHHHHHHHHHHHhccccccChhHhh-hc
Confidence 45677777777 7888888888 999999988652 2221 2457788889999999999777666656663 22
Q ss_pred ccCcccHHHHHHHHHHHHHHcCCcccCcChHHHHHHHHHhcC
Q 048738 169 LDYSFQSSTIRRMELTLLQSLGWRLGCITTYSYVELLLTNFD 210 (355)
Q Consensus 169 ~~~~f~~~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~~~ 210 (355)
+.++.+++-+||+..|..|+|++.++ +..|..+++...+
T Consensus 148 --gGisl~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~~~ 186 (293)
T 2pmi_B 148 --GGVRCHELNILENDFLKRVNYRIIPR-DHNITLCSIEQKQ 186 (293)
T ss_dssp --HTSCHHHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHSCC
T ss_pred --cCcCHHHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHHhh
Confidence 35799999999999999999999654 6677777766544
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=84.75 E-value=1.1 Score=38.96 Aligned_cols=78 Identities=17% Similarity=0.075 Sum_probs=52.7
Q ss_pred cccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhhcCCCCCcccchhhhhccCcccHHHHHHHH
Q 048738 104 ISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKFNDTSSPSLHEIQMEELDYSFQSSTIRRME 182 (355)
Q Consensus 104 ~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~eE~~~p~l~dl~v~~~~~~f~~~~I~~ME 182 (355)
++++.++.-. ..++.+..... -... ..-.-++.||+++|+++.... .+..++ ...+ ..+..+|.+.=
T Consensus 119 L~l~~~v~~~A~~i~~~~~~~~-----~~~g---r~P~~iAaAaly~A~~~~~~~-~t~~ei-~~~~--~vs~~ti~~~~ 186 (200)
T 1ais_B 119 LGLSEKVRRRAIEILDEAYKRG-----LTSG---KSPAGLVAAALYIASLLEGEK-RTQREV-AEVA--RVTEVTVRNRY 186 (200)
T ss_dssp HTCCHHHHHHHHHHHHHHHHTT-----CCTT---SCHHHHHHHHHHHHHHHTTCC-CCHHHH-HHHH--TCCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHcC-----cccC---CCHHHHHHHHHHHHHHHhCCC-CCHHHH-HHHh--CCCHHHHHHHH
Confidence 4555555555 66666665544 2222 244689999999999997644 456676 3333 26888999999
Q ss_pred HHHHHHcCCcc
Q 048738 183 LTLLQSLGWRL 193 (355)
Q Consensus 183 ~~IL~~L~w~l 193 (355)
..+.+.|+-.+
T Consensus 187 ~~l~~~l~~~~ 197 (200)
T 1ais_B 187 KELVEKLKIKV 197 (200)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHcCCCC
Confidence 99999998655
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=73.77 E-value=21 Score=30.77 Aligned_cols=86 Identities=12% Similarity=0.114 Sum_probs=51.8
Q ss_pred hHHHHHHHHHhcCCcchhhHHHHHHHHHHHHcccccccCCCHHHHHHHHHHHHHHhhcCCChhHHHHHhcccCcCChhhH
Q 048738 198 TYSYVELLLTNFDSLEFHLHNELTTLHINQTNADARLLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKDDV 277 (355)
Q Consensus 198 p~~FL~~fl~~~~~~~~~~~~~~~~~~ll~sl~d~~fl~~~PS~IAaAal~~a~~~l~~~w~~~l~~~s~~~~~~~~e~v 277 (355)
.+.+|..+...++..+.. .+....++...+....+.+++|-.||+||+++|.+.-+.. ..+..+..... +++.++
T Consensus 8 a~~~I~~~~~~L~L~~~v--~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p--~~l~di~~~~~-~~~~~i 82 (207)
T 1c9b_A 8 AFKEITTMADRINLPRNI--VDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVP--RTFKEICAVSR-ISKKEI 82 (207)
T ss_dssp HHHHHHHHHHHTTCCHHH--HHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCC--CCHHHHHHTSS-SCHHHH
T ss_pred HHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHC-CCHHHH
Confidence 456777777776643211 1111112334444455788999999999999999864322 12333333332 568889
Q ss_pred HHHHHHHHHhh
Q 048738 278 VRCNMIMKSRL 288 (355)
Q Consensus 278 ~~C~~~m~~~~ 288 (355)
..++..|.+.+
T Consensus 83 ~~~~~~ll~~L 93 (207)
T 1c9b_A 83 GRCFKLILKAL 93 (207)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99988877654
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=34.81 E-value=2.4e+02 Score=26.32 Aligned_cols=88 Identities=10% Similarity=0.115 Sum_probs=53.5
Q ss_pred cChHHHHHHHHHhcCCcchhhHHHHHHHHHHHHccccc-ccCCCHHHHHHHHHHHHHHhhcCCChhHHHHHhcccCcCCh
Q 048738 196 ITTYSYVELLLTNFDSLEFHLHNELTTLHINQTNADAR-LLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQK 274 (355)
Q Consensus 196 pTp~~FL~~fl~~~~~~~~~~~~~~~~~~ll~sl~d~~-fl~~~PS~IAaAal~~a~~~l~~~w~~~l~~~s~~~~~~~~ 274 (355)
-..+..|+.+...++..+. .. + .+.++.....+.. +-+.+...|||||||+|.+.-+.. -++..+..... +++
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~-v~-d-~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~p--rtl~eI~~~~~-v~~ 200 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKI-VK-D-CAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVA--RTFKEIQSLIH-VKT 200 (345)
T ss_dssp THHHHHHHHHHHHTTCCHH-HH-H-HHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCB--CCHHHHHHHHT-CCT
T ss_pred HHHHHHHHHHHHHcCCCHH-HH-H-HHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCC--ccHHHHHHHhC-CCH
Confidence 4567777777777764321 11 1 1223444444444 456778899999999999865432 22333333332 578
Q ss_pred hhHHHHHHHHHHhhh
Q 048738 275 DDVVRCNMIMKSRLV 289 (355)
Q Consensus 275 e~v~~C~~~m~~~~~ 289 (355)
.+|..+++.|...+.
T Consensus 201 keigr~~k~l~~~L~ 215 (345)
T 4bbr_M 201 KEFGKTLNIMKNILR 215 (345)
T ss_dssp THHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhC
Confidence 889999999887653
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=32.40 E-value=2.5e+02 Score=24.31 Aligned_cols=62 Identities=8% Similarity=0.081 Sum_probs=38.5
Q ss_pred HHcccccccC-CCHHHHHHHHHHHHHHhhc-CCChhHHHHHhc-cc---CcCChhhHHHHHHHHHHhh
Q 048738 227 QTNADARLLK-YQPSVVAVSALWCSLDELT-ASSCAHVAFITR-LF---NQEQKDDVVRCNMIMKSRL 288 (355)
Q Consensus 227 ~sl~d~~fl~-~~PS~IAaAal~~a~~~l~-~~w~~~l~~~s~-~~---~~~~~e~v~~C~~~m~~~~ 288 (355)
.-+....+.+ +.|-.||+|||++|.+.-+ |.--..+...+. +. ....+++|..+...|.+.+
T Consensus 58 Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~~~~~~~I~~~E~~iL~~L 125 (235)
T 1zp2_A 58 RYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVL 125 (235)
T ss_dssp HHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHT
T ss_pred HHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchhhccHHHHHHHHHHHHHHC
Confidence 3344445677 9999999999999998533 221122222221 10 0246888999988777654
No 24
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=28.36 E-value=79 Score=27.91 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=33.0
Q ss_pred hhhHHhhHHHhhhhcCCCCCccc------chhhhhccCcccHHHHHHHHHHHHHHcC
Q 048738 140 ELVSVACLSIASKFNDTSSPSLH------EIQMEELDYSFQSSTIRRMELTLLQSLG 190 (355)
Q Consensus 140 QLlavaCL~IAsK~eE~~~p~l~------dl~v~~~~~~f~~~~I~~ME~~IL~~L~ 190 (355)
..+|+||+++|+++.....|... .. -..-...++.++|...-..|++...
T Consensus 195 s~IAaAai~lA~~~~~~~~~~~~~~~~~~~W-~~~~~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 195 EIIAVAVMYLAGRLCKFEIQEWTSKPMYRRW-WEQFVQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGGBSSCCSSCG-GGGTSSSCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHhCCCCCccccCCCcccH-HHHhccCCCHHHHHHHHHHHHHHHh
Confidence 58999999999998765433211 11 0000125789999998888887654
No 25
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=25.48 E-value=23 Score=29.09 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=46.6
Q ss_pred HHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhh--cCCCCCcccch
Q 048738 88 FRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKF--NDTSSPSLHEI 164 (355)
Q Consensus 88 ~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~--eE~~~p~l~dl 164 (355)
.++|-|+..|-...-+.|.....+.. .|++=-|+-.+..-.-.+ .....+|-+..|||+||=-| .|+..|.-.-+
T Consensus 28 ~~~V~WlR~VDRsLLlQGWQD~~Fi~PanvVFvYmL~r~~v~~~~--~se~eLqa~~lTCLYlsYSYmGNEISYPLKPFl 105 (149)
T 3o0g_D 28 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEV--GSDHELQAVLLTCLYLSYSYMGNEISYPLKPFL 105 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSSCSCCHHHHHHHHHHHHHHSCTTC--CSHHHHHHHHHHHHHHHHHHHCSSSCCCSGGGC
T ss_pred chhhhhHHhhhHHHHHccchhcccccchHHHHHHHHHHHHccccc--CCHHHHHHHHHHHHHHHHHHhcccccccCcchh
Confidence 46788888776663223444444444 666666654331100022 23468999999999999887 57766654444
Q ss_pred hhhh
Q 048738 165 QMEE 168 (355)
Q Consensus 165 ~v~~ 168 (355)
|..
T Consensus 106 -v~~ 108 (149)
T 3o0g_D 106 -VES 108 (149)
T ss_dssp -CCS
T ss_pred -hcc
Confidence 543
No 26
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=25.00 E-value=60 Score=30.52 Aligned_cols=87 Identities=9% Similarity=0.083 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHhcCCcchhhHHHHHHHHHH-HHcccccccCCCHHHHHHHHHHHHHHhhcCCChhHHHHHhcccCcCChh
Q 048738 197 TTYSYVELLLTNFDSLEFHLHNELTTLHIN-QTNADARLLKYQPSVVAVSALWCSLDELTASSCAHVAFITRLFNQEQKD 275 (355)
Q Consensus 197 Tp~~FL~~fl~~~~~~~~~~~~~~~~~~ll-~sl~d~~fl~~~PS~IAaAal~~a~~~l~~~w~~~l~~~s~~~~~~~~e 275 (355)
..+.+|+.+...++..+... + .+..+. ..+....+-+.+.-.|||||||+|.+.-+.. -++..+..... +++.
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~--d-~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~p--rtl~ei~~~~~-v~~k 201 (345)
T 3k7a_M 128 AAFAKITMLCDAAELPKIVK--D-CAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVA--RTFKEIQSLIH-VKTK 201 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHH--T-HHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSS--CCHHHHHHSSS-CCSH
T ss_pred HHHHHHHHHHHHcCCCHHHH--H-HHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCC--ccHHHHHHHHC-CCHH
Confidence 34566777766665332111 1 111233 3333334567788999999999999854322 23444444443 5788
Q ss_pred hHHHHHHHHHHhhh
Q 048738 276 DVVRCNMIMKSRLV 289 (355)
Q Consensus 276 ~v~~C~~~m~~~~~ 289 (355)
+|..|++.|.+.+.
T Consensus 202 eIgr~~~~l~~~L~ 215 (345)
T 3k7a_M 202 EFGKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 89999998887664
No 27
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=21.89 E-value=34 Score=29.48 Aligned_cols=112 Identities=17% Similarity=0.176 Sum_probs=60.7
Q ss_pred HHHHHHHHhccccccccccccchhhh-hhhhccchhcccccccCCccccchhhhhhHHhhHHHhhhh--cCCCCCcccch
Q 048738 88 FRAIQWLIKVPIPYVLISYSLHLLFP-TNRVDIKKSVYVTCVLSPAEWKYWMVELVSVACLSIASKF--NDTSSPSLHEI 164 (355)
Q Consensus 88 ~~lvdWi~~V~~~y~~~~l~~eTl~l-Vn~lDRfLs~~~~~~~~~~~~k~~~lQLlavaCL~IAsK~--eE~~~p~l~dl 164 (355)
.++|-|+..|-...-+.|.....+.. .|++=-|+-.+..-.-.+. ....+|-+..|||+||--| .|+..|.-.-+
T Consensus 73 ~d~VmWLR~VDRsLLLQGWQD~aFI~PaNvVFvYmL~R~~v~~~~~--te~eLqa~vLTCLYlsYSYmGNEISYPLKPFl 150 (208)
T 1unl_D 73 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVG--SDHELQAVLLTCLYLSYSYMGNEISYPLKPFL 150 (208)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSCSCCHHHHHHHHHHHHHHSCTTCC--CHHHHHHHHHHHHHHHHHHHCSSSCCCSGGGC
T ss_pred cceehhHHhhhHHHHHccccccccccchhhhhHHHHHHHHcccccC--CHHHHHHHHHHHHHHHHHhhCccccccCccee
Confidence 46778888776663333444444444 6666666544311000222 3458999999999999888 57766654444
Q ss_pred hhhhccCcccH---HHHHHHHHHHHHHcCCcccCcChHHHHHHHHHh
Q 048738 165 QMEELDYSFQS---STIRRMELTLLQSLGWRLGCITTYSYVELLLTN 208 (355)
Q Consensus 165 ~v~~~~~~f~~---~~I~~ME~~IL~~L~w~l~~pTp~~FL~~fl~~ 208 (355)
|+..+..|-. .-|.+|-..+|+. --.|..|-+.|...
T Consensus 151 -ve~~ke~FWdRCl~ii~~~S~kML~i------N~~p~~Ftevf~eL 190 (208)
T 1unl_D 151 -VESCKEAFWDRCLSVINLMSSKMLQI------NADPHYFTQVFSDL 190 (208)
T ss_dssp -CSSCHHHHHHHHHHHHHHHHHHHHHH------HHCHHHHHHHHHHH
T ss_pred -ecCCHHHHHHHHHHHHHhhchhhhee------cCCccHHHHHHHHH
Confidence 5443333322 2233344444432 12456666666543
Done!