Query 048739
Match_columns 491
No_of_seqs 114 out of 214
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 22:04:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 54.4 58 0.002 36.3 10.7 126 31-175 56-189 (724)
2 2rkl_A Vacuolar protein sortin 11.0 84 0.0029 23.4 1.1 16 30-45 11-26 (53)
3 3bx4_B Aggretin beta chain; to 9.8 1.2E+02 0.004 25.3 1.8 46 1-46 1-56 (146)
4 2nud_C RIN4, RPM1-interacting 6.5 1.4E+02 0.0049 20.3 0.6 14 46-59 9-23 (35)
5 1m45_B IQ2, IQ2 motif from MYO 6.1 1.6E+02 0.0053 18.3 0.6 11 36-46 2-12 (26)
6 3mzk_B Protein transport prote 5.8 1.8E+02 0.006 30.4 1.2 17 29-45 365-381 (441)
7 1got_G GT-gamma; complex (GTP- 5.6 94 0.0032 24.5 -0.8 22 36-58 40-65 (73)
8 2zxe_B Na+,K+-ATPase beta subu 5.2 3.9E+02 0.013 26.4 3.2 7 53-60 72-78 (305)
9 1wa7_B TIP, hypothetical 28.7 5.1 2.5E+02 0.0087 17.6 1.1 8 50-57 1-8 (26)
10 3bua_E HSNM1B, DNA cross-LINK 4.9 3.6E+02 0.012 18.2 1.8 15 400-414 4-18 (36)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=54.42 E-value=58 Score=36.30 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=74.3
Q ss_pred ccccChHHHHHhhhcCCCccCCCCCCCChhHHHHHHH--HhhhcccccccccccccccCchhHHhhhhhHHHHHHHHHHH
Q 048739 31 DEIFHVPQAQQYCKGNFKSWDPMITTPPGLYYLSLAY--VASLFPGMLTVKAVSFFDVCSTAVLRSTNGVLAVLCSIILY 108 (491)
Q Consensus 31 DEiFHipQaQ~YC~g~f~~WDpKITTpPGLYlls~~~--~a~~~~~~~~~~~~~~~~~Cs~~~LR~~N~~~~~~~~~l~~ 108 (491)
|.-.|.+||+..-+|... |.-+.|=| +.++++. ++++++ .-.-...+....+++.+..+.++
T Consensus 56 D~yy~~r~ar~~l~~~~~---p~~~~p~g-~~~~~l~a~l~~i~g------------~sl~~v~~~lp~ifg~L~vi~~y 119 (724)
T 3rce_A 56 DGYAFAEGARDMIAGFHQ---PNDLSYFG-SSLSTLTYWLYSILP------------FSFESIILYMSTFFASLIVVPII 119 (724)
T ss_dssp HHHHHHHHHHHHHHSCCC---TTSCCCTT-CHHHHHHHHHHHSCS------------SCHHHHHHHHHHHHGGGGHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC---CCCCCCCc-chHHHHHHHHHHHcC------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988432 11122323 2333332 122111 11124556666666555555556
Q ss_pred HHHHHhccCcchhhhhHHHHHHhhhhhHHhhhhh--hccchhHHHHHHHHHHHHh---h-hhhHHHHHHHHHH
Q 048739 109 EIITYLRPALDDRKATLQAVVLALYPLHWFFSFL--YYTDVASLTAVLAMYLACL---K-KKYLFSALLGAFA 175 (491)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~a~~ialfP~lfFFsfL--yYTDv~St~~VL~~y~~~l---~-~~~~~sal~G~~s 175 (491)
-+.+++.. +..+...|+.++.-|-...=|.. |-||...+++.+++++... + ++...+++.|+..
T Consensus 120 ll~~el~~---~~aGl~AAll~ai~P~~i~RS~aG~~D~e~l~i~~~ll~~~~~i~alk~~~~~~~~lagl~~ 189 (724)
T 3rce_A 120 LIAREYKL---TTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFI 189 (724)
T ss_dssp HHHHHTTC---HHHHHHHHHHHTTSHHHHHTSSTTCCSGGGGTTHHHHHHHHHHHHHHHHCCTHHHHHHHHHH
T ss_pred HHHHHHcC---chHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666543 34566788899999997776666 8899988877766655543 2 3333444444443
No 2
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=11.01 E-value=84 Score=23.41 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=11.1
Q ss_pred cccccChHHHHHhhhc
Q 048739 30 MDEIFHVPQAQQYCKG 45 (491)
Q Consensus 30 mDEiFHipQaQ~YC~g 45 (491)
+|..=.+.|||+||+.
T Consensus 11 ~~~~~~i~~AqK~aK~ 26 (53)
T 2rkl_A 11 MDRASKIEQIQKLAKY 26 (53)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3334457899999974
No 3
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB: 2vrp_B
Probab=9.81 E-value=1.2e+02 Score=25.34 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=15.3
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhcCCCCcc----------ccccChHHHHHhhhcC
Q 048739 1 MGRIAVAVIVSFWVIPISILVNRVVPEPYM----------DEIFHVPQAQQYCKGN 46 (491)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~Vn~~vpePYm----------DEiFHipQaQ~YC~g~ 46 (491)
|||+.+..+.+...+......+..-|+.+. +|.---.+||++|+..
T Consensus 1 M~~~~~~~~~ll~~~~~~~~~~~~Cp~gw~~~~~~CY~~~~~~~~w~~A~~~C~~~ 56 (146)
T 3bx4_B 1 MGRFIFVSFGLLVVFLSLSGTGADCPSGWSSYEGHCYKPFNEPKNWADAERFCKLQ 56 (146)
T ss_dssp ------------------------CCTTCEEETTEEEEEEEEEECHHHHHHHHHHS
T ss_pred CceeHHHHHHHHHHHHhccCCCCCCCcCcEeeCCEEEEEECCCcCHHHHHHHHhcc
Confidence 888766654444444444445555666543 5555668899999873
No 4
>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}
Probab=6.54 E-value=1.4e+02 Score=20.31 Aligned_cols=14 Identities=29% Similarity=0.715 Sum_probs=9.7
Q ss_pred CCCccCCC-CCCCCh
Q 048739 46 NFKSWDPM-ITTPPG 59 (491)
Q Consensus 46 ~f~~WDpK-ITTpPG 59 (491)
+|.+||.| =+.++|
T Consensus 9 kFG~WD~~n~~s~~~ 23 (35)
T 2nud_C 9 KFGDWDENNPSSADG 23 (35)
T ss_dssp CCSGGGTTCTTCCCS
T ss_pred CCCcccCCCCCCCCC
Confidence 58899977 455555
No 5
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=6.09 E-value=1.6e+02 Score=18.30 Aligned_cols=11 Identities=36% Similarity=0.613 Sum_probs=7.4
Q ss_pred hHHHHHhhhcC
Q 048739 36 VPQAQQYCKGN 46 (491)
Q Consensus 36 ipQaQ~YC~g~ 46 (491)
|.||-+|.+++
T Consensus 2 isqaikylqnn 12 (26)
T 1m45_B 2 ISQAIKYLQNN 12 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HhHHHHHHHhc
Confidence 56777777654
No 6
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=5.80 E-value=1.8e+02 Score=30.41 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=14.6
Q ss_pred ccccccChHHHHHhhhc
Q 048739 29 YMDEIFHVPQAQQYCKG 45 (491)
Q Consensus 29 YmDEiFHipQaQ~YC~g 45 (491)
.+-|.-++.|||+||+.
T Consensus 365 ~Lae~G~~~~A~~Ycda 381 (441)
T 3mzk_B 365 LLQEQGLNSLGTKYTDY 381 (441)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHH
Confidence 45899999999999974
No 7
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=5.57 E-value=94 Score=24.48 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=16.7
Q ss_pred hHHH----HHhhhcCCCccCCCCCCCC
Q 048739 36 VPQA----QQYCKGNFKSWDPMITTPP 58 (491)
Q Consensus 36 ipQa----Q~YC~g~f~~WDpKITTpP 58 (491)
|.|| ++||+.+=.+ ||-++.+|
T Consensus 40 VS~aa~~L~~Yce~~~~~-DpLl~g~~ 65 (73)
T 1got_G 40 VSKCCEEFRDYVEERSGE-DPLVKGIP 65 (73)
T ss_dssp HHHHHHHHHHHHHHHGGG-CHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCC-CCCcCCCC
Confidence 4566 8999987765 88888666
No 8
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=5.21 E-value=3.9e+02 Score=26.43 Aligned_cols=7 Identities=57% Similarity=1.322 Sum_probs=4.6
Q ss_pred CCCCCChh
Q 048739 53 MITTPPGL 60 (491)
Q Consensus 53 KITTpPGL 60 (491)
.| ++|||
T Consensus 72 ~i-~~PGL 78 (305)
T 2zxe_B 72 RV-APPGL 78 (305)
T ss_dssp TT-CSCCB
T ss_pred CC-CCCee
Confidence 35 67886
No 9
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=5.09 E-value=2.5e+02 Score=17.64 Aligned_cols=8 Identities=63% Similarity=1.485 Sum_probs=4.1
Q ss_pred cCCCCCCC
Q 048739 50 WDPMITTP 57 (491)
Q Consensus 50 WDpKITTp 57 (491)
|||-|-+|
T Consensus 1 w~PG~P~P 8 (26)
T 1wa7_B 1 WDPGMPTP 8 (26)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 55555444
No 10
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=4.95 E-value=3.6e+02 Score=18.17 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHH
Q 048739 400 AHWSMKFLLVPLYVY 414 (491)
Q Consensus 400 r~~~~kYllvP~Y~~ 414 (491)
|.-..||++.|+-++
T Consensus 4 r~LALKYLLTPv~~l 18 (36)
T 3bua_E 4 RGLALKYLLTPVNFF 18 (36)
T ss_pred HHHHHHHHhhhHHHH
Done!