Query 048739
Match_columns 491
No_of_seqs 114 out of 214
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 22:05:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048739.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048739hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g47a2 g.39.1.3 (A:36-70) Pin 15.4 2.9 0.00021 27.0 -3.7 25 25-49 6-30 (35)
2 d1rifa_ c.37.1.23 (A:) DNA hel 14.3 7.6 0.00056 35.5 -2.6 28 34-61 31-65 (282)
3 d2q66a1 a.160.1.1 (A:202-351) 7.8 61 0.0044 26.9 1.2 22 26-54 68-90 (150)
4 d1kf6c_ f.21.2.2 (C:) Fumarate 7.5 2.7E+02 0.019 22.3 5.1 31 384-423 17-47 (130)
5 d2gysa2 b.1.2.1 (A:104-217) Co 7.4 58 0.0042 23.9 0.9 16 44-59 96-113 (114)
6 d1gg2g_ a.137.3.1 (G:) Transdu 6.9 64 0.0047 22.2 0.7 19 39-58 30-48 (54)
7 d1x8da1 d.58.4.21 (A:1-104) L- 5.9 44 0.0032 25.8 -0.7 9 29-37 96-104 (104)
8 d1x61a1 g.39.1.3 (A:8-34) Thyr 5.2 77 0.0056 18.3 0.2 9 29-37 17-25 (27)
9 d1q79a1 a.160.1.1 (A:215-364) 4.7 1.3E+02 0.0092 24.8 1.5 27 26-59 68-95 (150)
10 d1fngb2 d.19.1.1 (B:4-92) Clas 4.3 56 0.0041 24.9 -1.1 17 37-53 70-86 (89)
No 1
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.36 E-value=2.9 Score=26.99 Aligned_cols=25 Identities=16% Similarity=0.505 Sum_probs=21.2
Q ss_pred CCCCccccccChHHHHHhhhcCCCc
Q 048739 25 VPEPYMDEIFHVPQAQQYCKGNFKS 49 (491)
Q Consensus 25 vpePYmDEiFHipQaQ~YC~g~f~~ 49 (491)
-.+|.-|.-||..+.+.||+-+|.+
T Consensus 6 C~~~f~~~~F~e~~G~pYCe~~Y~~ 30 (35)
T d1g47a2 6 CFQQFPEGLFYEFEGRKYCEHDFQM 30 (35)
T ss_dssp TCCCCGGGCSEEETTEEECHHHHHH
T ss_pred CcCCCCCCCeEEECCEecChHhHHh
Confidence 3578889999999999999988753
No 2
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}
Probab=14.27 E-value=7.6 Score=35.45 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=17.6
Q ss_pred cChHHHHHhhhcCCCccCCCC-------CCCChhH
Q 048739 34 FHVPQAQQYCKGNFKSWDPMI-------TTPPGLY 61 (491)
Q Consensus 34 FHipQaQ~YC~g~f~~WDpKI-------TTpPGLY 61 (491)
|++|.||-==+.+...||.|| ++|.|||
T Consensus 31 f~~p~~~f~p~~r~~~WdGki~l~~~~~~~~~GL~ 65 (282)
T d1rifa_ 31 FEADGYRFNPRFRYGNWDGRIRLLDYNRLLPFGLV 65 (282)
T ss_dssp EECTTTTSCHHHHTSSCCSEEESSCTTCEEEGGGG
T ss_pred EeCCCcEechhhcCCCCCCeEEEEecccccchHHH
Confidence 567776521122445689998 6777883
No 3
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.78 E-value=61 Score=26.92 Aligned_cols=22 Identities=32% Similarity=0.735 Sum_probs=16.0
Q ss_pred CCC-ccccccChHHHHHhhhcCCCccCCCC
Q 048739 26 PEP-YMDEIFHVPQAQQYCKGNFKSWDPMI 54 (491)
Q Consensus 26 peP-YmDEiFHipQaQ~YC~g~f~~WDpKI 54 (491)
|+| .+|+++|-+ .++..|||+.
T Consensus 68 p~PV~l~~~~~~~-------~~~~~w~p~~ 90 (150)
T d2q66a1 68 PQPVILKPIEDGP-------LQVRVWNPKI 90 (150)
T ss_dssp TSCEESSCCCCCC-------TTSCCCCTTT
T ss_pred CCceeccCccccc-------ccCCCCCCCC
Confidence 556 678888853 6777899864
No 4
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=7.47 E-value=2.7e+02 Score=22.26 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=19.4
Q ss_pred cCCccchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 048739 384 ADNRHYPFYLWRKVIKAHWSMKFLLVPLYVYSWFSIFGIL 423 (491)
Q Consensus 384 ADNRHYtFYiwRr~~~r~~~~kYllvP~Y~~~~~~v~~~l 423 (491)
.+|++|.||.-|- -. .+|...||..+++...
T Consensus 17 ~k~~FYr~YMlRE-~T--------~v~~~~f~lvLl~Gl~ 47 (130)
T d1kf6c_ 17 KKLPFYRFYMLRE-GT--------AVPAVWFSIELIFGLF 47 (130)
T ss_dssp GSSHHHHHHHHHH-HT--------HHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHH-Hh--------HHHHHHHHHHHHHHHH
Confidence 4678899988774 11 4566666666655443
No 5
>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.40 E-value=58 Score=23.94 Aligned_cols=16 Identities=31% Similarity=0.779 Sum_probs=11.9
Q ss_pred hcCCCccCCC--CCCCCh
Q 048739 44 KGNFKSWDPM--ITTPPG 59 (491)
Q Consensus 44 ~g~f~~WDpK--ITTpPG 59 (491)
.|.|.+|-+- .+||||
T Consensus 96 ~g~wS~WS~~v~~~t~pg 113 (114)
T d2gysa2 96 SGRPSKWSPEVCWDSQPG 113 (114)
T ss_dssp CBCCCCCCCCEEEECCCC
T ss_pred CCCccCCcCCEeeeCcCC
Confidence 3678999654 469998
No 6
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.87 E-value=64 Score=22.18 Aligned_cols=19 Identities=37% Similarity=0.828 Sum_probs=15.4
Q ss_pred HHHhhhcCCCccCCCCCCCC
Q 048739 39 AQQYCKGNFKSWDPMITTPP 58 (491)
Q Consensus 39 aQ~YC~g~f~~WDpKITTpP 58 (491)
-++||+.+=.+ ||-+|-+|
T Consensus 30 l~~y~e~~~~~-Dpll~g~~ 48 (54)
T d1gg2g_ 30 LMAYCEAHAKE-DPLLTPVP 48 (54)
T ss_dssp HHHHHHHHGGG-CTTTSCCC
T ss_pred HHHHHHhcCcC-CCCcCCCC
Confidence 47899998875 99998755
No 7
>d1x8da1 d.58.4.21 (A:1-104) L-rhamnose mutarotase YiiL {Escherichia coli [TaxId: 562]}
Probab=5.92 E-value=44 Score=25.81 Aligned_cols=9 Identities=33% Similarity=0.811 Sum_probs=7.7
Q ss_pred ccccccChH
Q 048739 29 YMDEIFHVP 37 (491)
Q Consensus 29 YmDEiFHip 37 (491)
-|+||||.|
T Consensus 96 ~l~eVF~Lp 104 (104)
T d1x8da1 96 ELQEVFYLP 104 (104)
T ss_dssp ECEEEEEEC
T ss_pred ccceeeeCc
Confidence 489999987
No 8
>d1x61a1 g.39.1.3 (A:8-34) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.16 E-value=77 Score=18.35 Aligned_cols=9 Identities=44% Similarity=0.874 Sum_probs=7.0
Q ss_pred ccccccChH
Q 048739 29 YMDEIFHVP 37 (491)
Q Consensus 29 YmDEiFHip 37 (491)
-+|.+||+.
T Consensus 17 aldrvfhvg 25 (27)
T d1x61a1 17 ALDRVFHVG 25 (27)
T ss_dssp CSSSEECTT
T ss_pred EEeeeEEec
Confidence 479999973
No 9
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.70 E-value=1.3e+02 Score=24.79 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=19.2
Q ss_pred CCC-ccccccChHHHHHhhhcCCCccCCCCCCCCh
Q 048739 26 PEP-YMDEIFHVPQAQQYCKGNFKSWDPMITTPPG 59 (491)
Q Consensus 26 peP-YmDEiFHipQaQ~YC~g~f~~WDpKITTpPG 59 (491)
|+| ++||+.|. +.++..|||+...-..
T Consensus 68 p~PV~l~~~~~~-------~~~~~~w~pr~~~~dr 95 (150)
T d1q79a1 68 PNPVLLKQPEEC-------NLNLPVWDPRVNPSDR 95 (150)
T ss_dssp TSCBCSSCCCCC-------SSCCCCCCTTTCGGGG
T ss_pred CCCeeccCcccc-------cCCCCCCCCCCCCccc
Confidence 455 77888774 3788899998765544
No 10
>d1fngb2 d.19.1.1 (B:4-92) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), I-EK [TaxId: 10090]}
Probab=4.27 E-value=56 Score=24.87 Aligned_cols=17 Identities=18% Similarity=0.628 Sum_probs=13.8
Q ss_pred HHHHHhhhcCCCccCCC
Q 048739 37 PQAQQYCKGNFKSWDPM 53 (491)
Q Consensus 37 pQaQ~YC~g~f~~WDpK 53 (491)
.|..+||++|+..|+|-
T Consensus 70 a~vd~~CrhNy~v~~~f 86 (89)
T d1fngb2 70 AEVDTVCRHNYEIFDNF 86 (89)
T ss_dssp HHHHHTHHHHHHHHTTT
T ss_pred hccCccccCCcceeeee
Confidence 35578999999998874
Done!