BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048741
         (314 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WH7|A Chain A, Solution Structure Of Homeobox Domain Of Arabidopsis
           Thaliana Hypothetical Protein F22k18.140
          Length = 80

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 45/53 (84%)

Query: 242 KRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMH 294
           KRFRTKFT EQKEKM  FAE++GW+IQK ++  V+QFC E GV+R+VLK+WMH
Sbjct: 18  KRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMH 70


>pdb|1WH5|A Chain A, Solution Structure Of Homeobox Domain Of
           Arabidopsisthaliana Zinc Finger Homeobox Family Protein
          Length = 80

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 47/55 (85%)

Query: 240 VKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMH 294
           ++KR RTKFT EQKE+M   AE++GW+IQ+Q++ V+Q+FCQE GV R+VLKVW+H
Sbjct: 16  IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLH 70


>pdb|2DPS|A Chain A, Structure Of LeucylPHENYLALANYL-Trna-Protein Transferase
 pdb|2DPS|B Chain B, Structure Of LeucylPHENYLALANYL-Trna-Protein Transferase
 pdb|2DPT|A Chain A, LeucylPHENYLALANYL-Trna-Protein Transferase Complexed With
           Puromycin
 pdb|2DPT|B Chain B, LeucylPHENYLALANYL-Trna-Protein Transferase Complexed With
           Puromycin
          Length = 254

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 168 GHHKNILAATPEALGYPTPTGTLISSR---PVGGGPTPHQMIMSYNMGSIPSES 218
           G H  ++  +  ++ +P+P G L        +GG  +P +++M+Y  G  P  S
Sbjct: 18  GSHMRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFS 71


>pdb|2XQN|M Chain M, Complex Of The 2nd And 3rd Lim Domains Of Tes With The
           Evh1 Domain Of Mena And The N-Terminal Domain Of
           Actin-Like Protein Arp7a
          Length = 119

 Score = 28.5 bits (62), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 150 YHHHMNPHFNRVGRKVILGHHKNILAATPEALGYPTPTGTL 190
           YHH  N  F  VGRK I  H   I  A P+ L Y   T T 
Sbjct: 41  YHHTGNNTFRVVGRK-IQDHQVVINCAIPKGLKYNQATQTF 80


>pdb|2IYB|A Chain A, Structure Of Complex Between The 3rd Lim Domain Of Tes And
           The Evh1 Domain Of Mena
 pdb|2IYB|B Chain B, Structure Of Complex Between The 3rd Lim Domain Of Tes And
           The Evh1 Domain Of Mena
 pdb|2IYB|C Chain C, Structure Of Complex Between The 3rd Lim Domain Of Tes And
           The Evh1 Domain Of Mena
 pdb|2IYB|D Chain D, Structure Of Complex Between The 3rd Lim Domain Of Tes And
           The Evh1 Domain Of Mena
          Length = 114

 Score = 28.5 bits (62), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 150 YHHHMNPHFNRVGRKVILGHHKNILAATPEALGYPTPTGTL 190
           YHH  N  F  VGRK I  H   I  A P+ L Y   T T 
Sbjct: 39  YHHTGNNTFRVVGRK-IQDHQVVINCAIPKGLKYNQATQTF 78


>pdb|1EVH|A Chain A, Evh1 Domain From Murine Enabled In Complex With Acta
           Peptide
          Length = 112

 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 150 YHHHMNPHFNRVGRKVILGHHKNILAATPEALGYPTPTGTL 190
           YHH  N  F  VGRK I  H   I  A P+ L Y   T T 
Sbjct: 38  YHHTGNNTFRVVGRK-IQDHQVVINCAIPKGLKYNQATQTF 77


>pdb|2DA3|A Chain A, Solution Structure Of The Third Homeobox Domain Of At-
           Binding Transcription Factor 1 (Atbf1)
          Length = 80

 Score = 27.7 bits (60), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 242 KRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMH 294
           KR RT  T EQ E ++          +K    ++     E+G+K+RV++VW  
Sbjct: 18  KRLRTTITPEQLEILYQKYLLDSNPTRK----MLDHIAHEVGLKKRVVQVWFQ 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,492,749
Number of Sequences: 62578
Number of extensions: 346429
Number of successful extensions: 714
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 12
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)