BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048741
(314 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FKP8|Y5541_ARATH ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana
GN=At5g65410 PE=1 SV=1
Length = 279
Score = 160 bits (406), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 113/221 (51%), Gaps = 41/221 (18%)
Query: 82 VKYKECLKNHAAGMGGNATDGCGEFMPSGEEGTIEALTCSACNCHRNFHRKEIEGEQQQQ 141
+++ECLKN A +GG+A DGCGEFMP+G EGTI+AL C+AC CHRNFHRKE+
Sbjct: 73 FRFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKEL------- 125
Query: 142 AAINPFDYYHHHMNPHFNRVGRKVILGHHKNILAATPEALGYPTPTGTLISSRPVGGGPT 201
P+F+ + P + Y P
Sbjct: 126 --------------PYFHHAPPQHQPPPPPPGFYRLPAPVSYRPPPSQAPPL-------Q 164
Query: 202 PHQMIMSYNMGSIPSESDEHEDGIGGGVVMAARPTAQLVKKRFRTKFTQEQKEKMFNFAE 261
P E+ E G G ++KR RTKFT EQKE+M AE
Sbjct: 165 LALPPPQRERSEDPMETSSAEAGGG-------------IRKRHRTKFTAEQKERMLALAE 211
Query: 262 KVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAK 302
++GW+IQ+Q++ V+Q+FCQE GV R+VLKVW+HNNKH L K
Sbjct: 212 RIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGK 252
>sp|Q9SEZ1|HB29_ARATH Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1
Length = 242
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 129/257 (50%), Gaps = 48/257 (18%)
Query: 47 SSAPQISPINGPPIPISTNLEDQQNGSTINVNKKM-VKYKECLKNHAAGMGGNATDGCGE 105
SS PQ +N PI + V +M V YKECLKNHAA +GG+A DGCGE
Sbjct: 4 SSKPQQQLLNSLPI-----------AGELTVTGEMGVCYKECLKNHAANLGGHALDGCGE 52
Query: 106 FMPSGEEGTIE--ALTCSACNCHRNFHRKEIEGEQQQQAAINPFDYYHHHMNPHFNRVGR 163
FMPS + + +L C+AC CHRNFHR++ E P +P V
Sbjct: 53 FMPSPTATSTDPSSLRCAACGCHRNFHRRD-PSENLNFLTAPPISSPSGTESPPSRHVSS 111
Query: 164 KVILGHHKNILAATPEALGYPTPTGTLISSRPVGGGPTPHQMIMSYNMGSIPSESDEHED 223
V ++ +S P PH +I+S + G P SD+
Sbjct: 112 PVPCSYY---------------------TSAP------PHHVILSLSSG-FPGPSDQDPT 143
Query: 224 GIGGGVVMAARPTAQLVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIG 283
VV + + ++KR RTKFT EQK KM FAEK GWKI +E V++FC E+G
Sbjct: 144 -----VVRSENSSRGAMRKRTRTKFTPEQKIKMRAFAEKAGWKINGCDEKSVREFCNEVG 198
Query: 284 VKRRVLKVWMHNNKHNL 300
++R VLKVWMHNNK++L
Sbjct: 199 IERGVLKVWMHNNKYSL 215
>sp|Q9SB61|Y4466_ARATH ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana
GN=At4g24660 PE=1 SV=1
Length = 220
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 116/229 (50%), Gaps = 63/229 (27%)
Query: 82 VKYKECLKNHAAGMGGNATDGCGEFMPSGEEGTIEALTCSACNCHRNFHRKEIEGEQQQQ 141
++Y+ECLKNHA +GG+A DGC EFMPSGE+GT++AL C+AC
Sbjct: 47 IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAAC------------------ 88
Query: 142 AAINPFDYYHHHMNPHFNRVGRKVILGHHKNILAATPEALGYPTPTGTLISSRPVGGGPT 201
G H+N E++G +RP P
Sbjct: 89 --------------------------GCHRNFHRKETESIGGRAHRVPTYYNRP----PQ 118
Query: 202 PHQ------MIMSYNMGSIPSESDEHEDGIGGGVVMAARPTAQL-VKKRFRTKFTQEQKE 254
PHQ + P+ S + ED + P++ KRFRTKFT EQKE
Sbjct: 119 PHQPPGYLHLTSPAAPYRPPAASGDEED--------TSNPSSSGGTTKRFRTKFTAEQKE 170
Query: 255 KMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303
KM FAE++GW+IQK ++ V+QFC E GV+R+VLK+WMHNNK++L KK
Sbjct: 171 KMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSLGKK 219
>sp|Q9Z0S2|LHX2_MOUSE LIM/homeobox protein Lhx2 OS=Mus musculus GN=Lhx2 PE=1 SV=1
Length = 406
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 19/146 (13%)
Query: 176 ATPEALGYPTPTGTLISSRPVG-GGPTPHQMIMSYNMGSIPSESD-EHEDGIGGGVVMAA 233
A P L Y GT+ RP P P + +YN +E+D EH D
Sbjct: 206 ANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDAEHLDRD------QP 259
Query: 234 RPTAQLVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESV-VQQFCQEIGVKRRVLKVW 292
P++Q K R RT F Q M ++ + I ++ ++Q Q+ G+ +RVL+VW
Sbjct: 260 YPSSQKTK-RMRTSFKHHQLRTMKSY-----FAINHNPDAKDLKQLAQKTGLTKRVLQVW 313
Query: 293 MHNN----KHNLAKKNNINPPSTTTA 314
N + NL ++ N T+ A
Sbjct: 314 FQNARAKFRRNLLRQENTGVDKTSDA 339
>sp|P50458|LHX2_HUMAN LIM/homeobox protein Lhx2 OS=Homo sapiens GN=LHX2 PE=2 SV=2
Length = 406
Score = 38.1 bits (87), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 19/144 (13%)
Query: 178 PEALGYPTPTGTLISSRPVG-GGPTPHQMIMSYNMGSIPSESD-EHEDGIGGGVVMAARP 235
P L Y GT+ RP P P + +YN +E+D EH D P
Sbjct: 208 PLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDAEHLDRD------QPYP 261
Query: 236 TAQLVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESV-VQQFCQEIGVKRRVLKVWMH 294
++Q K R RT F Q M ++ + I ++ ++Q Q+ G+ +RVL+VW
Sbjct: 262 SSQKTK-RMRTSFKHHQLRTMKSY-----FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQ 315
Query: 295 NN----KHNLAKKNNINPPSTTTA 314
N + NL ++ N +T A
Sbjct: 316 NARAKFRRNLLRQENTGVDKSTDA 339
>sp|A2T7P4|GSC_PONPY Homeobox protein goosecoid OS=Pongo pygmaeus GN=GSC PE=3 SV=1
Length = 257
Score = 38.1 bits (87), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 36/138 (26%)
Query: 175 AATPEALGYPTPTGTLISSRPVGGGPTPHQMIMSYNMGSIPSESDEHEDGIGGGVVMAAR 234
+ P GY P L+S P PHQM+ N+G++ +R
Sbjct: 112 SCVPAPSGYEGPGSVLVS-------PVPHQMLPYMNVGTL------------------SR 146
Query: 235 PTAQLV-------KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRR 287
QL+ K+R RT FT EQ E + N ++ + + +Q +++ ++
Sbjct: 147 TELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYP----DVGTREQLARKVHLREE 202
Query: 288 VLKVWMHNNKHNLAKKNN 305
++VW N + ++
Sbjct: 203 KVEVWFKNRRAKWRRQKR 220
>sp|P56915|GSC_HUMAN Homeobox protein goosecoid OS=Homo sapiens GN=GSC PE=1 SV=2
Length = 257
Score = 38.1 bits (87), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 36/138 (26%)
Query: 175 AATPEALGYPTPTGTLISSRPVGGGPTPHQMIMSYNMGSIPSESDEHEDGIGGGVVMAAR 234
+ P GY P L+S P PHQM+ N+G++ +R
Sbjct: 112 SCVPTPPGYEGPGSVLVS-------PVPHQMLPYMNVGTL------------------SR 146
Query: 235 PTAQLV-------KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRR 287
QL+ K+R RT FT EQ E + N ++ + + +Q +++ ++
Sbjct: 147 TELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYP----DVGTREQLARKVHLREE 202
Query: 288 VLKVWMHNNKHNLAKKNN 305
++VW N + ++
Sbjct: 203 KVEVWFKNRRAKWRRQKR 220
>sp|Q02591|GSC_MOUSE Homeobox protein goosecoid OS=Mus musculus GN=Gsc PE=2 SV=1
Length = 256
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 36/138 (26%)
Query: 175 AATPEALGYPTPTGTLISSRPVGGGPTPHQMIMSYNMGSIPSESDEHEDGIGGGVVMAAR 234
+ P GY P L+S P PHQM+ N+G++ +R
Sbjct: 112 SCVPTPPGYEGPGSVLVS-------PVPHQMLPYMNVGTL------------------SR 146
Query: 235 PTAQLV-------KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRR 287
QL+ K+R RT FT EQ E + N ++ + + +Q +++ ++
Sbjct: 147 TELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYP----DVGTREQLARKVHLREE 202
Query: 288 VLKVWMHNNKHNLAKKNN 305
++VW N + ++
Sbjct: 203 KVEVWFKNRRAKWRRQKR 220
>sp|A1YFI3|GSC_SAGLB Homeobox protein goosecoid OS=Saguinus labiatus GN=GSC PE=3 SV=1
Length = 257
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 36/138 (26%)
Query: 175 AATPEALGYPTPTGTLISSRPVGGGPTPHQMIMSYNMGSIPSESDEHEDGIGGGVVMAAR 234
+ P GY P L+S P PHQM+ N+G++ +R
Sbjct: 112 SCVPTPPGYEGPGSVLVS-------PVPHQMLPYMNVGTL------------------SR 146
Query: 235 PTAQLV-------KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRR 287
QL+ K+R RT FT EQ E + N ++ + + +Q +++ ++
Sbjct: 147 TELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYP----DVGTREQLARKVHLREE 202
Query: 288 VLKVWMHNNKHNLAKKNN 305
++VW N + ++
Sbjct: 203 KVEVWFKNRRAKWRRQKR 220
>sp|A2T733|GSC_PANTR Homeobox protein goosecoid OS=Pan troglodytes GN=GSC PE=3 SV=1
Length = 257
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 36/138 (26%)
Query: 175 AATPEALGYPTPTGTLISSRPVGGGPTPHQMIMSYNMGSIPSESDEHEDGIGGGVVMAAR 234
+ P GY P L+S P PHQM+ N+G++ +R
Sbjct: 112 SCVPTPPGYEGPGSVLVS-------PVPHQMLPYMNVGTL------------------SR 146
Query: 235 PTAQLV-------KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRR 287
QL+ K+R RT FT EQ E + N ++ + + +Q +++ ++
Sbjct: 147 TELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYP----DVGTREQLARKVHLREE 202
Query: 288 VLKVWMHNNKHNLAKKNN 305
++VW N + ++
Sbjct: 203 KVEVWFKNRRAKWRRQKR 220
>sp|A1YG57|GSC_PANPA Homeobox protein goosecoid OS=Pan paniscus GN=GSC PE=3 SV=1
Length = 257
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 36/138 (26%)
Query: 175 AATPEALGYPTPTGTLISSRPVGGGPTPHQMIMSYNMGSIPSESDEHEDGIGGGVVMAAR 234
+ P GY P L+S P PHQM+ N+G++ +R
Sbjct: 112 SCVPTPPGYEGPGSVLVS-------PVPHQMLPYMNVGTL------------------SR 146
Query: 235 PTAQLV-------KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRR 287
QL+ K+R RT FT EQ E + N ++ + + +Q +++ ++
Sbjct: 147 TELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYP----DVGTREQLARKVHLREE 202
Query: 288 VLKVWMHNNKHNLAKKNN 305
++VW N + ++
Sbjct: 203 KVEVWFKNRRAKWRRQKR 220
>sp|A1YEY5|GSC_GORGO Homeobox protein goosecoid OS=Gorilla gorilla gorilla GN=GSC PE=3
SV=1
Length = 257
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 36/138 (26%)
Query: 175 AATPEALGYPTPTGTLISSRPVGGGPTPHQMIMSYNMGSIPSESDEHEDGIGGGVVMAAR 234
+ P GY P L+S P PHQM+ N+G++ +R
Sbjct: 112 SCVPTPPGYEGPGSVLVS-------PVPHQMLPYMNVGTL------------------SR 146
Query: 235 PTAQLV-------KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRR 287
QL+ K+R RT FT EQ E + N ++ + + +Q +++ ++
Sbjct: 147 TELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYP----DVGTREQLARKVHLREE 202
Query: 288 VLKVWMHNNKHNLAKKNN 305
++VW N + ++
Sbjct: 203 KVEVWFKNRRAKWRRQKR 220
>sp|P53544|GSC_DANRE Homeobox protein goosecoid OS=Danio rerio GN=gsc PE=2 SV=1
Length = 240
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 36/123 (29%)
Query: 182 GYPTPTGTLISSRPVGGGPTPHQMIMSYNMGSIPSESDEHEDGIGGGVVMAARPTAQLV- 240
GY + LIS P PHQM+ N+G++ +R QL+
Sbjct: 105 GYDSAGSVLIS-------PVPHQMMSYMNVGTL------------------SRTELQLLN 139
Query: 241 ------KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMH 294
K+R RT FT EQ E + N ++ + + +Q +++ ++ ++VW
Sbjct: 140 QLHCRRKRRHRTIFTDEQLEALENLFQETKYP----DVGTREQLARKVHLREEKVEVWFK 195
Query: 295 NNK 297
N +
Sbjct: 196 NRR 198
>sp|Q9WUH2|LHX9_MOUSE LIM/homeobox protein Lhx9 OS=Mus musculus GN=Lhx9 PE=1 SV=3
Length = 397
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 180 ALGYPTPTGTLISSRPVG-GGPTPHQMIMSYNMGSIPSESDEHEDGIGGGVVMAARPTAQ 238
AL Y TGT+ RP P I++YN G +E+D + P +Q
Sbjct: 212 ALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRD------QQPYPPSQ 265
Query: 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESV-VQQFCQEIGVKRRVLKVWMHNN- 296
K R RT F Q M ++ + I ++ ++Q Q+ G+ +RVL+VW N
Sbjct: 266 KTK-RMRTSFKHHQLRTMKSY-----FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNAR 319
Query: 297 ---KHNLAKKNN 305
+ NL ++ N
Sbjct: 320 AKFRRNLLRQEN 331
>sp|P36198|LHX2_RAT LIM/homeobox protein Lhx2 OS=Rattus norvegicus GN=Lhx2 PE=2 SV=1
Length = 426
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 19/141 (13%)
Query: 181 LGYPTPTGTLISSRPVG-GGPTPHQMIMSYNMGSIPSESD-EHEDGIGGGVVMAARPTAQ 238
L Y GT+ RP P P + +YN +E+D EH D P++Q
Sbjct: 209 LPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDAEHLDRD------QPYPSSQ 262
Query: 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESV-VQQFCQEIGVKRRVLKVWMHNN- 296
K R RT F Q M ++ + I ++ ++Q Q+ G+ +RVL+VW N
Sbjct: 263 KTK-RMRTSFKHHQLRTMKSY-----FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNAR 316
Query: 297 ---KHNLAKKNNINPPSTTTA 314
+ NL ++ N T+ A
Sbjct: 317 AKFRRNLLRQENTGVDKTSDA 337
>sp|Q80W90|LHX9_RAT LIM/homeobox protein Lhx9 OS=Rattus norvegicus GN=Lhx9 PE=2 SV=1
Length = 388
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 180 ALGYPTPTGTLISSRPVG-GGPTPHQMIMSYNMGSIPSESDEHEDGIGGGVVMAARPTAQ 238
AL Y TGT+ RP P I++YN G +E+D + P +Q
Sbjct: 203 ALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRD------QQPYPPSQ 256
Query: 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESV-VQQFCQEIGVKRRVLKVWMHNN- 296
K R RT F Q M ++ + I ++ ++Q Q+ G+ +RVL+VW N
Sbjct: 257 KTK-RMRTSFKHHQLRTMKSY-----FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNAR 310
Query: 297 ---KHNLAKKNN 305
+ NL ++ N
Sbjct: 311 AKFRRNLLRQEN 322
>sp|Q9NQ69|LHX9_HUMAN LIM/homeobox protein Lhx9 OS=Homo sapiens GN=LHX9 PE=1 SV=3
Length = 397
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 180 ALGYPTPTGTLISSRPVG-GGPTPHQMIMSYNMGSIPSESDEHEDGIGGGVVMAARPTAQ 238
AL Y TGT+ RP P I++YN G +E+D + P +Q
Sbjct: 212 ALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRD------QQPYPPSQ 265
Query: 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESV-VQQFCQEIGVKRRVLKVWMHNN- 296
K R RT F Q M ++ + I ++ ++Q Q+ G+ +RVL+VW N
Sbjct: 266 KTK-RMRTSFKHHQLRTMKSY-----FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNAR 319
Query: 297 ---KHNLAKKNN 305
+ NL ++ N
Sbjct: 320 AKFRRNLLRQEN 331
>sp|A0JNI8|LHX9_BOVIN LIM/homeobox protein Lhx9 OS=Bos taurus GN=LHX9 PE=2 SV=2
Length = 397
Score = 35.8 bits (81), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 180 ALGYPTPTGTLISSRPVG-GGPTPHQMIMSYNMGSIPSESDEHEDGIGGGVVMAARPTAQ 238
AL Y TGT+ RP P I++YN G +E+D + P +Q
Sbjct: 212 ALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRD------QQPYPPSQ 265
Query: 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESV-VQQFCQEIGVKRRVLKVWMHNN- 296
K R RT F Q M ++ + I ++ ++Q Q+ G+ +RVL+VW N
Sbjct: 266 KTK-RMRTSFKHHQLRTMKSY-----FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNAR 319
Query: 297 ---KHNLAKKNN 305
+ NL ++ N
Sbjct: 320 AKFRRNLLRQEN 331
>sp|O73590|ZFHX4_CHICK Zinc finger homeobox protein 4 OS=Gallus gallus GN=ZFHX4 PE=2 SV=2
Length = 3573
Score = 35.0 bits (79), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 242 KRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297
KR RT T EQ E ++ EK + ++ +E+G+K+RV++VW N +
Sbjct: 2549 KRLRTTITPEQLEILY---EKYLLDSNPTRK-MLDHIAREVGLKKRVVQVWFQNTR 2600
>sp|Q90881|LHX9_CHICK LIM/homeobox protein Lhx9 OS=Gallus gallus GN=LHX9 PE=2 SV=2
Length = 397
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 18/132 (13%)
Query: 180 ALGYPTPTGTLISSRPVG-GGPTPHQMIMSYNMGSIPSESDEHEDGIGGGVVMAARPTAQ 238
AL Y TGT+ RP P I++YN G +E+D + P +Q
Sbjct: 212 ALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHMDRD------QQPYPPSQ 265
Query: 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESV-VQQFCQEIGVKRRVLKVWMHNN- 296
K R T F Q M ++ + I ++ ++Q Q+ G+ +RVL+VW N
Sbjct: 266 KTK-RMATSFKHHQLRTMKSY-----FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNAR 319
Query: 297 ---KHNLAKKNN 305
+ NL ++ N
Sbjct: 320 AKFRRNLLRQEN 331
>sp|O30611|ICEK_PSESX Ice nucleation protein OS=Pseudomonas syringae GN=inaK PE=3 SV=1
Length = 1148
Score = 31.6 bits (70), Expect = 7.2, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 54 PINGPPIPISTNLEDQQNGSTI---NVNKKMVKY--KECLKNHA---AGMGGNATDGCGE 105
P+N P+ NL+ GST+ N ++ + Y E NH+ AG G T G G
Sbjct: 165 PVNTLPVTTPQNLQTATYGSTLSGDNHSRLIAGYGSNETAGNHSDLIAGYGSTGTAGYGS 224
Query: 106 FMPSGEEGTIEA 117
SGE+ ++ A
Sbjct: 225 TQTSGEDSSLTA 236
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,692,610
Number of Sequences: 539616
Number of extensions: 6200864
Number of successful extensions: 29319
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 25029
Number of HSP's gapped (non-prelim): 2591
length of query: 314
length of database: 191,569,459
effective HSP length: 117
effective length of query: 197
effective length of database: 128,434,387
effective search space: 25301574239
effective search space used: 25301574239
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)