Query 048741
Match_columns 314
No_of_seqs 260 out of 1183
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 22:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh5_A ZF-HD homeobox family p 99.9 1.2E-23 3.9E-28 163.8 4.9 66 238-303 14-79 (80)
2 1wh7_A ZF-HD homeobox family p 99.9 2.8E-23 9.7E-28 162.0 5.1 66 238-303 14-79 (80)
3 2da3_A Alpha-fetoprotein enhan 99.8 3.3E-20 1.1E-24 142.0 3.5 65 238-306 14-78 (80)
4 2kt0_A Nanog, homeobox protein 99.8 1.6E-19 5.5E-24 139.7 5.8 66 238-307 19-84 (84)
5 2da4_A Hypothetical protein DK 99.8 4E-20 1.4E-24 142.3 2.0 72 239-310 6-77 (80)
6 2dmt_A Homeobox protein BARH-l 99.8 2E-19 6.7E-24 138.7 4.9 63 239-305 15-77 (80)
7 2dms_A Homeobox protein OTX2; 99.7 7.1E-19 2.4E-23 135.4 5.2 69 239-311 5-73 (80)
8 2dmq_A LIM/homeobox protein LH 99.7 4.4E-19 1.5E-23 136.1 3.7 62 239-304 5-66 (80)
9 2cra_A Homeobox protein HOX-B1 99.7 5.8E-19 2E-23 132.8 3.7 63 239-305 5-67 (70)
10 2da2_A Alpha-fetoprotein enhan 99.7 9.3E-19 3.2E-23 131.2 4.0 64 239-306 5-68 (70)
11 2dmu_A Homeobox protein goosec 99.7 9.2E-19 3.2E-23 131.4 4.0 62 240-305 6-67 (70)
12 2vi6_A Homeobox protein nanog; 99.7 6.2E-19 2.1E-23 129.5 2.6 61 240-304 2-62 (62)
13 2h1k_A IPF-1, pancreatic and d 99.7 9.2E-19 3.2E-23 129.2 2.7 61 240-304 2-62 (63)
14 2da1_A Alpha-fetoprotein enhan 99.7 1E-18 3.5E-23 131.0 2.8 63 239-305 5-67 (70)
15 2djn_A Homeobox protein DLX-5; 99.7 9.9E-19 3.4E-23 131.5 2.4 63 239-305 5-67 (70)
16 1ahd_P Antennapedia protein mu 99.7 1.2E-18 4E-23 130.8 2.6 65 241-309 2-66 (68)
17 2hdd_A Protein (engrailed home 99.7 1.3E-18 4.3E-23 127.5 2.4 60 240-303 2-61 (61)
18 1nk2_P Homeobox protein VND; h 99.7 1.8E-18 6.1E-23 132.4 3.2 64 239-306 7-70 (77)
19 1bw5_A ISL-1HD, insulin gene e 99.7 1.8E-18 6E-23 128.5 3.1 63 240-306 2-64 (66)
20 2m0c_A Homeobox protein arista 99.7 2.8E-18 9.4E-23 129.6 4.2 64 239-306 7-70 (75)
21 2e1o_A Homeobox protein PRH; D 99.7 2.5E-18 8.6E-23 129.3 3.9 63 240-306 6-68 (70)
22 2cue_A Paired box protein PAX6 99.7 1.4E-18 4.8E-23 133.9 2.3 61 240-304 6-66 (80)
23 3a01_A Homeodomain-containing 99.7 2.5E-18 8.5E-23 136.6 3.7 67 239-309 15-81 (93)
24 2l7z_A Homeobox protein HOX-A1 99.7 4.9E-18 1.7E-22 129.0 4.9 64 239-306 5-68 (73)
25 2dn0_A Zinc fingers and homeob 99.7 5E-18 1.7E-22 129.7 4.1 65 241-309 8-72 (76)
26 3nar_A ZHX1, zinc fingers and 99.7 3.2E-18 1.1E-22 136.4 2.8 62 239-304 23-84 (96)
27 1b8i_A Ultrabithorax, protein 99.7 3.1E-18 1.1E-22 132.6 2.5 62 240-305 19-80 (81)
28 1ig7_A Homeotic protein MSX-1; 99.7 3.7E-18 1.3E-22 123.5 2.7 57 242-302 1-57 (58)
29 1zq3_P PRD-4, homeotic bicoid 99.7 2.9E-18 1E-22 128.4 1.7 63 241-307 2-64 (68)
30 1ftt_A TTF-1 HD, thyroid trans 99.7 6.4E-18 2.2E-22 126.6 3.5 63 241-307 2-64 (68)
31 1jgg_A Segmentation protein EV 99.7 4.9E-18 1.7E-22 124.0 2.7 58 242-303 2-59 (60)
32 1yz8_P Pituitary homeobox 2; D 99.7 1.5E-18 5.1E-23 129.8 -0.2 63 240-306 2-64 (68)
33 2r5y_A Homeotic protein sex co 99.7 3.5E-18 1.2E-22 133.8 1.9 61 240-304 27-87 (88)
34 1puf_A HOX-1.7, homeobox prote 99.7 6.1E-18 2.1E-22 129.5 2.9 63 239-305 11-73 (77)
35 1fjl_A Paired protein; DNA-bin 99.7 5.7E-18 1.9E-22 130.6 2.6 62 239-304 16-77 (81)
36 2da5_A Zinc fingers and homeob 99.7 2.2E-17 7.6E-22 126.1 5.0 61 243-307 9-69 (75)
37 2k40_A Homeobox expressed in E 99.7 8.8E-18 3E-22 125.1 2.5 61 242-306 2-62 (67)
38 3rkq_A Homeobox protein NKX-2. 99.7 8E-18 2.7E-22 120.9 2.1 57 241-301 2-58 (58)
39 2ly9_A Zinc fingers and homeob 99.7 1.9E-17 6.5E-22 125.3 3.7 63 241-307 6-68 (74)
40 1b72_A Protein (homeobox prote 99.7 1.1E-17 3.6E-22 133.4 1.6 63 239-305 32-94 (97)
41 3a02_A Homeobox protein arista 99.7 1.5E-17 5.2E-22 121.4 2.0 58 244-305 2-59 (60)
42 2cuf_A FLJ21616 protein; homeo 99.7 2.6E-17 8.8E-22 130.7 2.9 64 239-306 5-83 (95)
43 2hi3_A Homeodomain-only protei 99.6 3.2E-17 1.1E-21 124.3 2.9 63 242-308 3-66 (73)
44 1akh_A Protein (mating-type pr 99.6 2.2E-17 7.4E-22 120.5 1.8 58 240-301 4-61 (61)
45 1uhs_A HOP, homeodomain only p 99.6 4.2E-17 1.4E-21 123.2 2.8 63 242-308 2-65 (72)
46 2ecc_A Homeobox and leucine zi 99.6 4E-17 1.4E-21 127.1 2.7 57 244-304 6-62 (76)
47 2dmp_A Zinc fingers and homeob 99.6 1.5E-16 5.2E-21 125.5 6.0 60 245-308 17-76 (89)
48 1e3o_C Octamer-binding transcr 99.6 3.7E-17 1.3E-21 141.2 2.6 62 239-304 99-160 (160)
49 1du6_A PBX1, homeobox protein 99.6 3E-17 1E-21 121.0 1.4 59 241-303 3-64 (64)
50 3a03_A T-cell leukemia homeobo 99.6 4.3E-17 1.5E-21 117.8 2.0 55 246-304 2-56 (56)
51 1wi3_A DNA-binding protein SAT 99.6 6.1E-17 2.1E-21 124.5 2.7 60 239-301 5-64 (71)
52 1puf_B PRE-B-cell leukemia tra 99.6 7.8E-17 2.7E-21 121.8 2.8 63 241-307 1-66 (73)
53 2xsd_C POU domain, class 3, tr 99.6 6.4E-17 2.2E-21 140.8 1.8 65 238-306 96-160 (164)
54 1au7_A Protein PIT-1, GHF-1; c 99.6 8.9E-17 3E-21 137.2 2.3 62 239-304 85-146 (146)
55 2ecb_A Zinc fingers and homeob 99.6 2.7E-16 9.2E-21 125.4 4.9 57 247-307 17-73 (89)
56 1b72_B Protein (PBX1); homeodo 99.6 9.1E-17 3.1E-21 125.0 1.8 59 242-304 2-63 (87)
57 1x2n_A Homeobox protein pknox1 99.6 3E-16 1E-20 118.6 4.4 66 239-305 5-70 (73)
58 2dmn_A Homeobox protein TGIF2L 99.6 4.4E-16 1.5E-20 121.3 4.6 64 240-304 6-69 (83)
59 3d1n_I POU domain, class 6, tr 99.6 4.5E-16 1.5E-20 132.9 3.5 60 239-302 91-150 (151)
60 2da6_A Hepatocyte nuclear fact 99.6 3.1E-16 1E-20 128.3 2.1 62 239-304 4-86 (102)
61 1lfb_A Liver transcription fac 99.6 2.8E-16 9.6E-21 127.2 1.1 64 239-306 7-91 (99)
62 1mnm_C Protein (MAT alpha-2 tr 99.6 8.5E-16 2.9E-20 120.0 3.1 62 240-302 26-87 (87)
63 1k61_A Mating-type protein alp 99.6 1.2E-15 4.2E-20 111.0 2.9 59 244-303 1-59 (60)
64 2cqx_A LAG1 longevity assuranc 99.5 3.9E-16 1.3E-20 119.0 0.2 59 242-304 9-68 (72)
65 1le8_B Mating-type protein alp 99.5 1.6E-15 5.4E-20 117.8 3.2 64 241-305 2-65 (83)
66 2d5v_A Hepatocyte nuclear fact 99.5 1.3E-15 4.3E-20 131.2 2.3 64 239-306 95-158 (164)
67 2l9r_A Homeobox protein NKX-3. 99.5 2.3E-15 7.9E-20 114.6 2.5 57 247-307 10-66 (69)
68 3l1p_A POU domain, class 5, tr 99.5 1.1E-15 3.6E-20 131.6 0.7 61 239-303 94-154 (155)
69 2e19_A Transcription factor 8; 99.5 2.8E-15 9.6E-20 112.1 1.6 55 246-304 8-62 (64)
70 3nau_A Zinc fingers and homeob 99.5 7.9E-15 2.7E-19 111.6 1.7 52 248-303 11-62 (66)
71 1x2m_A LAG1 longevity assuranc 99.4 2.5E-14 8.4E-19 108.0 -0.1 51 250-304 9-60 (64)
72 3k2a_A Homeobox protein MEIS2; 99.4 9.8E-14 3.4E-18 104.1 1.6 59 247-306 4-62 (67)
73 1ic8_A Hepatocyte nuclear fact 99.4 4.8E-14 1.7E-18 126.3 -0.4 61 239-303 113-194 (194)
74 2da7_A Zinc finger homeobox pr 99.3 1.1E-12 3.9E-17 101.0 2.4 52 250-305 14-65 (71)
75 2h8r_A Hepatocyte nuclear fact 99.2 1.5E-12 5E-17 119.1 2.1 60 238-301 139-219 (221)
76 1mh3_A Maltose binding-A1 home 99.1 3.8E-12 1.3E-16 118.9 -0.1 57 241-301 365-421 (421)
77 2lk2_A Homeobox protein TGIF1; 99.0 7.5E-11 2.6E-15 94.3 1.7 58 246-304 10-67 (89)
78 2nzz_A Penetratin conjugated G 98.4 3.1E-08 1E-12 67.6 -1.0 19 287-305 1-19 (37)
79 2elh_A CG11849-PA, LD40883P; s 89.0 0.22 7.7E-06 37.7 2.6 46 241-295 16-61 (87)
80 2glo_A Brinker CG9653-PA; prot 88.1 0.17 5.7E-06 35.7 1.3 46 245-295 3-48 (59)
81 2ys9_A Homeobox and leucine zi 87.9 0.13 4.6E-06 39.3 0.7 37 254-294 19-55 (70)
82 1hlv_A CENP-B, major centromer 85.7 0.3 1E-05 38.7 1.7 48 244-298 4-51 (131)
83 1tc3_C Protein (TC3 transposas 82.3 0.55 1.9E-05 29.9 1.6 41 247-296 5-45 (51)
84 1jko_C HIN recombinase, DNA-in 80.5 0.37 1.3E-05 31.4 0.2 42 247-297 5-46 (52)
85 3c57_A Two component transcrip 72.9 0.58 2E-05 35.9 -0.6 50 247-306 27-76 (95)
86 2jn6_A Protein CGL2762, transp 72.6 0.88 3E-05 34.5 0.4 43 245-295 3-46 (97)
87 1iuf_A Centromere ABP1 protein 71.7 2.2 7.5E-05 35.1 2.7 48 242-296 6-60 (144)
88 2rn7_A IS629 ORFA; helix, all 70.4 1.9 6.3E-05 33.2 1.8 49 245-295 4-53 (108)
89 2ofy_A Putative XRE-family tra 67.8 1.7 5.9E-05 31.6 1.1 49 245-297 3-52 (86)
90 1u78_A TC3 transposase, transp 66.0 2.1 7.1E-05 33.5 1.3 43 246-297 5-47 (141)
91 1je8_A Nitrate/nitrite respons 65.9 0.61 2.1E-05 34.8 -1.7 49 245-303 19-67 (82)
92 2k27_A Paired box protein PAX- 65.3 4 0.00014 33.3 3.0 43 246-297 24-66 (159)
93 3hug_A RNA polymerase sigma fa 63.6 0.48 1.6E-05 35.8 -2.8 48 247-303 37-84 (92)
94 1fse_A GERE; helix-turn-helix 59.2 1 3.4E-05 31.8 -1.6 48 245-302 9-56 (74)
95 1pdn_C Protein (PRD paired); p 58.7 2.9 9.9E-05 31.7 0.9 40 247-295 17-56 (128)
96 1p4w_A RCSB; solution structur 58.7 2.2 7.6E-05 33.4 0.2 47 245-301 32-78 (99)
97 2rnj_A Response regulator prot 57.6 0.71 2.4E-05 34.8 -2.7 49 246-304 28-76 (91)
98 1x3u_A Transcriptional regulat 53.8 0.95 3.2E-05 32.5 -2.5 47 247-303 16-62 (79)
99 2o8x_A Probable RNA polymerase 53.8 2.1 7.3E-05 29.7 -0.6 48 247-303 15-62 (70)
100 2p7v_B Sigma-70, RNA polymeras 52.2 1.8 6.1E-05 30.7 -1.2 52 247-303 5-56 (68)
101 3i5g_B Myosin regulatory light 51.6 31 0.0011 27.6 6.1 44 244-287 6-50 (153)
102 1k78_A Paired box protein PAX5 51.0 4.9 0.00017 32.2 1.1 41 246-295 31-71 (149)
103 1irz_A ARR10-B; helix-turn-hel 50.4 5.8 0.0002 29.6 1.3 61 241-303 3-63 (64)
104 1s7o_A Hypothetical UPF0122 pr 50.3 3.5 0.00012 33.0 0.1 48 246-302 21-68 (113)
105 3m20_A 4-oxalocrotonate tautom 49.0 27 0.00093 24.3 4.7 35 248-296 10-44 (62)
106 2r1j_L Repressor protein C2; p 48.6 6.2 0.00021 26.7 1.2 36 254-297 8-43 (68)
107 3mzy_A RNA polymerase sigma-H 48.5 1.8 6.2E-05 34.0 -1.8 47 247-303 109-155 (164)
108 3mb2_B 4-oxalocrotonate tautom 48.4 25 0.00087 26.9 4.6 35 249-297 14-48 (72)
109 3fia_A Intersectin-1; EH 1 dom 47.8 6.4 0.00022 32.4 1.3 47 247-293 26-73 (121)
110 2rgt_A Fusion of LIM/homeobox 46.6 0.2 6.8E-06 42.3 -8.2 29 240-272 135-163 (169)
111 2x48_A CAG38821; archeal virus 45.3 5.7 0.00019 26.7 0.5 39 247-294 13-53 (55)
112 1zug_A Phage 434 CRO protein; 44.8 5.2 0.00018 27.4 0.3 37 254-298 6-42 (71)
113 2lv7_A Calcium-binding protein 44.3 25 0.00085 26.7 4.2 52 243-294 25-79 (100)
114 3ej9_B Beta-subunit of trans-3 44.2 27 0.00093 26.6 4.2 34 249-296 12-45 (70)
115 1xsv_A Hypothetical UPF0122 pr 44.2 3.2 0.00011 33.0 -1.0 47 247-302 25-71 (113)
116 3clo_A Transcriptional regulat 43.7 3.4 0.00012 36.6 -1.0 50 245-304 195-244 (258)
117 2lfw_A PHYR sigma-like domain; 43.2 2.4 8.1E-05 34.6 -2.0 49 247-304 93-141 (157)
118 1l0o_C Sigma factor; bergerat 42.8 5.1 0.00018 33.4 0.0 45 247-300 198-242 (243)
119 3kz3_A Repressor protein CI; f 41.6 4 0.00014 29.4 -0.8 50 248-298 2-51 (80)
120 3fmy_A HTH-type transcriptiona 41.0 10 0.00035 27.1 1.4 41 246-297 9-49 (73)
121 1adr_A P22 C2 repressor; trans 40.6 6.3 0.00022 27.3 0.2 23 275-297 21-43 (76)
122 1r69_A Repressor protein CI; g 40.5 10 0.00035 25.7 1.3 35 255-297 5-39 (69)
123 1tty_A Sigma-A, RNA polymerase 40.4 4.9 0.00017 30.0 -0.5 52 247-303 18-69 (87)
124 3on2_A Probable transcriptiona 40.1 19 0.00066 28.2 3.0 37 256-297 21-57 (199)
125 3ulq_B Transcriptional regulat 39.8 3.9 0.00013 31.2 -1.1 48 244-301 26-73 (90)
126 1gyx_A YDCE, B1461, hypothetic 39.6 37 0.0013 24.5 4.3 37 247-297 11-47 (76)
127 2b5a_A C.BCLI; helix-turn-heli 39.4 7.2 0.00025 27.2 0.4 36 254-297 13-48 (77)
128 3abf_A 4-oxalocrotonate tautom 39.0 43 0.0015 22.7 4.4 35 248-296 12-46 (64)
129 1ku3_A Sigma factor SIGA; heli 38.9 5.3 0.00018 28.6 -0.4 50 247-301 10-59 (73)
130 3m21_A Probable tautomerase HP 38.9 43 0.0015 23.4 4.5 36 247-296 13-48 (67)
131 2q0o_A Probable transcriptiona 37.9 4.7 0.00016 35.0 -1.0 48 245-302 173-220 (236)
132 2ao9_A Phage protein; structur 37.8 8.1 0.00028 33.2 0.5 51 245-296 21-72 (155)
133 2q1z_A RPOE, ECF SIGE; ECF sig 37.6 3.1 0.00011 33.8 -2.2 47 248-303 136-182 (184)
134 1y7y_A C.AHDI; helix-turn-heli 37.5 8.1 0.00028 26.6 0.4 36 254-297 16-51 (74)
135 3b7h_A Prophage LP1 protein 11 37.4 8.2 0.00028 27.0 0.3 36 254-297 10-45 (78)
136 1rfh_A RAS association (ralgds 36.9 11 0.00037 26.8 1.0 20 99-124 24-43 (59)
137 3q0w_A HTH-type transcriptiona 36.3 7 0.00024 32.7 -0.2 36 257-297 54-89 (236)
138 3bni_A Putative TETR-family tr 36.2 10 0.00034 31.7 0.8 35 258-297 54-88 (229)
139 1u78_A TC3 transposase, transp 36.2 22 0.00075 27.5 2.7 44 247-298 60-105 (141)
140 2fnf_X Putative RAS effector N 35.8 16 0.00056 27.1 1.8 29 98-132 36-66 (72)
141 1lmb_3 Protein (lambda repress 35.4 13 0.00046 26.9 1.3 23 275-297 33-55 (92)
142 3him_A Probable transcriptiona 34.1 17 0.00057 28.9 1.8 39 254-297 23-61 (211)
143 2iai_A Putative transcriptiona 33.8 11 0.00039 31.2 0.8 40 253-297 36-75 (230)
144 2k9q_A Uncharacterized protein 33.8 9.5 0.00032 27.0 0.2 21 276-296 19-39 (77)
145 1ity_A TRF1; helix-turn-helix, 33.7 35 0.0012 24.6 3.3 25 240-264 5-29 (69)
146 2ef8_A C.ECOT38IS, putative tr 33.6 10 0.00035 26.8 0.4 36 254-297 13-48 (84)
147 3t76_A VANU, transcriptional r 33.6 10 0.00035 28.9 0.4 19 277-295 42-60 (88)
148 3fiw_A Putative TETR-family tr 33.4 20 0.00069 30.2 2.3 52 241-297 18-70 (211)
149 2a6c_A Helix-turn-helix motif; 33.0 9 0.00031 27.9 -0.0 22 276-297 35-56 (83)
150 2kpj_A SOS-response transcript 32.9 7.6 0.00026 28.8 -0.5 17 270-286 49-65 (94)
151 3mb2_A 4-oxalocrotonate tautom 32.6 62 0.0021 23.0 4.5 34 248-295 12-45 (72)
152 2xi8_A Putative transcription 32.4 9.3 0.00032 25.6 -0.0 21 276-296 18-38 (66)
153 2qko_A Possible transcriptiona 32.4 10 0.00034 31.0 0.1 36 257-297 38-73 (215)
154 1or7_A Sigma-24, RNA polymeras 32.3 3.1 0.0001 34.1 -3.0 30 274-303 158-187 (194)
155 3o9x_A Uncharacterized HTH-typ 31.8 13 0.00045 29.2 0.8 40 247-297 70-109 (133)
156 1l3l_A Transcriptional activat 31.7 6.1 0.00021 34.2 -1.3 47 245-301 171-217 (234)
157 3bs3_A Putative DNA-binding pr 31.7 9.9 0.00034 26.4 0.0 19 277-295 28-46 (76)
158 1otf_A 4-oxalocrotonate tautom 31.3 63 0.0021 21.6 4.2 34 249-296 12-45 (62)
159 3dcf_A Transcriptional regulat 31.0 10 0.00034 30.5 -0.1 38 255-297 39-76 (218)
160 3bdn_A Lambda repressor; repre 31.0 9.4 0.00032 32.7 -0.2 50 247-297 6-55 (236)
161 3cwr_A Transcriptional regulat 30.8 20 0.00067 28.4 1.7 34 258-296 28-61 (208)
162 2np5_A Transcriptional regulat 30.6 14 0.00047 30.1 0.7 46 247-297 8-54 (203)
163 3f6w_A XRE-family like protein 29.8 12 0.00041 26.6 0.2 22 276-297 31-52 (83)
164 3i5g_C Myosin catalytic light 29.8 33 0.0011 27.7 2.9 42 246-287 1-45 (159)
165 2ict_A Antitoxin HIGA; helix-t 29.8 11 0.00039 27.7 0.1 17 270-286 48-64 (94)
166 3nxc_A HTH-type protein SLMA; 29.8 13 0.00044 29.8 0.4 26 272-297 45-70 (212)
167 2hku_A A putative transcriptio 29.2 8.8 0.0003 31.3 -0.7 27 271-297 38-64 (215)
168 1k81_A EIF-2-beta, probable tr 29.1 13 0.00043 24.5 0.2 14 115-128 19-32 (36)
169 1rp3_A RNA polymerase sigma fa 29.1 9 0.00031 32.0 -0.7 48 247-303 187-234 (239)
170 1uiz_A MIF, macrophage migrati 28.4 68 0.0023 24.6 4.4 35 249-297 69-103 (115)
171 2lhi_A Calmodulin, serine/thre 28.3 46 0.0016 27.2 3.5 43 245-287 2-45 (176)
172 1b72_A Protein (homeobox prote 28.2 13 0.00043 28.7 0.0 23 281-303 2-24 (97)
173 3g1o_A Transcriptional regulat 28.1 10 0.00035 32.1 -0.6 36 257-297 53-88 (255)
174 3npi_A TETR family regulatory 27.9 10 0.00036 32.0 -0.5 46 247-297 17-63 (251)
175 2opa_A Probable tautomerase YW 27.9 79 0.0027 21.1 4.2 34 249-296 12-45 (61)
176 1hfo_A Migration inhibitory fa 27.7 72 0.0025 24.3 4.4 35 249-297 68-102 (113)
177 3s8q_A R-M controller protein; 27.7 15 0.00051 26.2 0.4 21 276-296 28-48 (82)
178 2hxo_A Putative TETR-family tr 27.1 29 0.001 29.7 2.2 52 241-297 9-61 (237)
179 2pmy_A RAS and EF-hand domain- 27.1 14 0.00047 26.9 0.1 50 245-294 18-68 (91)
180 2g7l_A TETR-family transcripti 26.6 28 0.00097 30.1 2.1 51 242-297 13-64 (243)
181 3ej9_A Alpha-subunit of trans- 26.6 82 0.0028 22.8 4.3 34 249-296 13-46 (76)
182 2l49_A C protein; P2 bacteriop 26.3 17 0.00059 26.7 0.5 12 270-281 44-55 (99)
183 2os5_A Acemif; macrophage migr 26.3 79 0.0027 24.5 4.5 35 249-297 69-103 (119)
184 3c3w_A Two component transcrip 26.2 8.9 0.0003 32.3 -1.3 47 246-302 148-194 (225)
185 2k27_A Paired box protein PAX- 26.2 33 0.0011 27.7 2.3 50 245-298 81-137 (159)
186 2qib_A TETR-family transcripti 26.2 12 0.0004 31.3 -0.5 36 257-297 23-58 (231)
187 3qq6_A HTH-type transcriptiona 26.1 15 0.00053 26.4 0.2 18 269-286 50-67 (78)
188 3vk0_A NHTF, transcriptional r 25.9 17 0.0006 27.9 0.5 19 277-295 39-57 (114)
189 1nee_A EIF-2-beta, probable tr 25.7 17 0.00059 30.6 0.5 15 115-129 121-135 (138)
190 3ry0_A Putative tautomerase; o 25.7 93 0.0032 21.4 4.3 33 249-295 12-44 (65)
191 3he0_A Transcriptional regulat 25.3 22 0.00076 28.0 1.0 40 253-297 17-56 (196)
192 3qp6_A CVIR transcriptional re 25.2 15 0.00052 32.8 0.1 48 245-302 195-242 (265)
193 2jpc_A SSRB; DNA binding prote 25.0 6.7 0.00023 26.7 -1.9 28 276-303 17-44 (61)
194 2jtd_A Myomesin-1, skelemin; i 24.8 0.53 1.8E-05 40.2 -8.9 45 247-296 18-62 (142)
195 3qqa_A CMER; alpha-helical, he 24.7 50 0.0017 26.3 3.1 36 257-297 29-64 (216)
196 2wiu_B HTH-type transcriptiona 24.2 17 0.00058 26.0 0.1 21 276-296 29-49 (88)
197 3omt_A Uncharacterized protein 23.7 15 0.00053 25.5 -0.2 17 270-286 48-64 (73)
198 2ebv_A Nuclear pore complex pr 23.4 37 0.0012 24.8 1.8 21 102-125 33-53 (57)
199 3mf7_A CIS-3-chloroacrylic aci 23.3 74 0.0025 26.5 4.0 35 247-295 11-45 (149)
200 2ebq_A Nuclear pore complex pr 23.2 23 0.00079 24.9 0.6 19 103-124 14-32 (47)
201 3dew_A Transcriptional regulat 23.2 16 0.00054 28.8 -0.3 39 254-297 15-53 (206)
202 3ppb_A Putative TETR family tr 22.8 21 0.00072 27.9 0.4 40 253-297 15-54 (195)
203 1k78_A Paired box protein PAX5 22.8 79 0.0027 24.9 3.9 45 245-296 88-142 (149)
204 3gj5_B Nuclear pore complex pr 22.8 26 0.00088 23.0 0.8 11 114-124 18-28 (34)
205 2np3_A Putative TETR-family re 22.7 23 0.00078 28.7 0.7 27 271-297 49-75 (212)
206 2x4k_A 4-oxalocrotonate tautom 22.5 1.1E+02 0.0039 20.0 4.2 34 249-296 15-48 (63)
207 3fwb_A Cell division control p 22.5 1.7E+02 0.0058 22.0 5.7 45 242-286 11-56 (161)
208 3rd3_A Probable transcriptiona 22.5 28 0.00095 27.3 1.1 39 255-298 18-56 (197)
209 2jpf_A Hypothetical protein; a 22.3 9.1 0.00031 31.1 -1.8 8 289-296 54-61 (127)
210 1qgp_A Protein (double strande 22.2 13 0.00043 27.8 -1.0 43 247-293 10-52 (77)
211 3op9_A PLI0006 protein; struct 22.1 19 0.00064 27.4 0.0 19 269-287 48-66 (114)
212 2iu5_A DHAS, YCEG, HTH-type dh 22.1 45 0.0015 26.6 2.3 40 253-297 19-58 (195)
213 2dg8_A Putative TETR-family tr 22.0 26 0.00091 27.9 0.9 39 254-297 16-54 (193)
214 2rae_A Transcriptional regulat 21.9 29 0.001 27.7 1.1 37 257-298 27-63 (207)
215 3kkd_A Transcriptional regulat 21.8 48 0.0017 27.3 2.5 36 257-297 45-80 (237)
216 3lwj_A Putative TETR-family tr 21.8 15 0.00052 29.2 -0.6 35 258-297 23-57 (202)
217 2yum_A ZZZ3 protein, zinc fing 21.7 81 0.0028 22.8 3.5 54 242-299 5-61 (75)
218 1faq_A RAF-1; transferase, ser 21.7 28 0.00095 23.5 0.8 25 99-130 16-42 (52)
219 2qtq_A Transcriptional regulat 21.4 28 0.00094 27.7 0.9 39 254-297 23-61 (213)
220 2xcz_A Possible ATLS1-like lig 21.3 76 0.0026 24.3 3.4 35 249-297 69-103 (115)
221 2ebr_A Nuclear pore complex pr 20.9 42 0.0014 23.4 1.6 19 103-124 14-32 (47)
222 3gzi_A Transcriptional regulat 20.8 31 0.0011 27.7 1.1 25 273-297 38-62 (218)
223 3gj3_B Nuclear pore complex pr 20.7 30 0.001 22.5 0.8 11 114-124 18-28 (33)
224 3aqt_A Bacterial regulatory pr 20.6 45 0.0015 28.0 2.1 37 256-297 55-91 (245)
225 2pz9_A Putative regulatory pro 20.6 16 0.00053 30.3 -0.8 46 247-297 29-75 (226)
226 2g2k_A EIF-5, eukaryotic trans 20.6 25 0.00085 30.8 0.4 17 114-130 116-132 (170)
227 2e9h_A EIF-5, eukaryotic trans 20.5 24 0.00083 30.4 0.4 17 114-130 123-139 (157)
228 1sgm_A Putative HTH-type trans 20.3 48 0.0017 25.7 2.1 39 253-296 12-51 (191)
229 1j9i_A GPNU1 DBD;, terminase s 20.0 18 0.00061 25.7 -0.5 23 275-297 5-27 (68)
230 3f1b_A TETR-like transcription 20.0 15 0.0005 29.1 -1.1 35 258-297 25-59 (203)
231 2dim_A Cell division cycle 5-l 20.0 1E+02 0.0034 22.1 3.6 23 242-264 6-28 (70)
No 1
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.88 E-value=1.2e-23 Score=163.78 Aligned_cols=66 Identities=58% Similarity=1.039 Sum_probs=62.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 238 QLVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 238 ~~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
..++||.||.||.+|++.|+.+|+++|||++||+..+|++||.+|||++.+|||||||||+|+|+.
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 346789999999999999999999999999999999999999999999999999999999999863
No 2
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.87 E-value=2.8e-23 Score=162.03 Aligned_cols=66 Identities=59% Similarity=1.026 Sum_probs=61.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 238 QLVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 238 ~~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
..++||.||.||.+|++.|++|.+++||+++||+..+|++||.+|||++.+|||||||||+|+|+.
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 346789999999999999997777899999999999999999999999999999999999999863
No 3
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=3.3e-20 Score=141.99 Aligned_cols=65 Identities=26% Similarity=0.430 Sum_probs=61.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCC
Q 048741 238 QLVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNI 306 (314)
Q Consensus 238 ~~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~ 306 (314)
..++||.||.||.+|++.|+.+|+. ++||+..++++||.+|||++.+|+|||||||+|+||++..
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 78 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLL----DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPS 78 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccC
Confidence 3467899999999999999999999 9999999999999999999999999999999999998743
No 4
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-19 Score=139.73 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=62.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCCC
Q 048741 238 QLVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNIN 307 (314)
Q Consensus 238 ~~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~~ 307 (314)
..++||.||.||.+|+..|+.+|+. ++||+..++++||.+|||++.+|+|||||||+|+||++..|
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k~~ 84 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQR----QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNN 84 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHH----SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcC
Confidence 3467899999999999999999999 99999999999999999999999999999999999988654
No 5
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4e-20 Score=142.34 Aligned_cols=72 Identities=10% Similarity=0.145 Sum_probs=64.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCCCCCC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNINPPS 310 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~~p~s 310 (314)
.++||.||.||.+|++.|+.+|++-+|..+||+..++++||.++||++.+|+|||||||+|+||.....+++
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~~~~p 77 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIEVSGP 77 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCCCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCCCCCC
Confidence 467899999999999999999999666669999999999999999999999999999999999987555443
No 6
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2e-19 Score=138.70 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNN 305 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~ 305 (314)
.++||.||.||.+|+..|+.+|+. ++||+..++++||.+|||++.+|+|||||||+|+||+..
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEK----QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 467889999999999999999999 999999999999999999999999999999999999875
No 7
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=7.1e-19 Score=135.36 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=63.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCCCCCCC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNINPPST 311 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~~p~s~ 311 (314)
.+.||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||++.....+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~~~ 73 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAK----TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGG 73 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccCCCC
Confidence 357889999999999999999999 999999999999999999999999999999999999886655443
No 8
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.4e-19 Score=136.12 Aligned_cols=62 Identities=26% Similarity=0.479 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
.++||.||.||.+|++.|+.+|+. ++||+..++++||.+|||++.+|+|||||||+|+||+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAI----NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 357899999999999999999999 99999999999999999999999999999999999875
No 9
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=5.8e-19 Score=132.75 Aligned_cols=63 Identities=10% Similarity=0.173 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNN 305 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~ 305 (314)
.+.||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAA----NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 356889999999999999999999 999999999999999999999999999999999999874
No 10
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=9.3e-19 Score=131.23 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNI 306 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~ 306 (314)
.++||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||+...
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDA----NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 357889999999999999999999 9999999999999999999999999999999999998754
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=9.2e-19 Score=131.44 Aligned_cols=62 Identities=21% Similarity=0.414 Sum_probs=59.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCC
Q 048741 240 VKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNN 305 (314)
Q Consensus 240 ~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~ 305 (314)
..||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQE----TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 56889999999999999999999 999999999999999999999999999999999999875
No 12
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.73 E-value=6.2e-19 Score=129.52 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=53.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 240 VKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 240 ~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
++||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQK----QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 46889999999999999999999 99999999999999999999999999999999999974
No 13
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.72 E-value=9.2e-19 Score=129.18 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=56.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 240 VKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 240 ~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
++||.||.||.+|+..|+..|+. ++||+..++++||.++||++.+|+|||||||+|+||++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLF----NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 36889999999999999999999 99999999999999999999999999999999999975
No 14
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=1e-18 Score=130.97 Aligned_cols=63 Identities=19% Similarity=0.347 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNN 305 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~ 305 (314)
.++||.||.||.+|++.|+.+|+. ++||+..++++||.++||++.+|+|||||+|+|+||+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDI----NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHH----CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH----CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 357889999999999999999999 999999999999999999999999999999999999875
No 15
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=9.9e-19 Score=131.47 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNN 305 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~ 305 (314)
...||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||+.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQK----TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcC----CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 356889999999999999999999 999999999999999999999999999999999998864
No 16
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.72 E-value=1.2e-18 Score=130.79 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=61.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCCCCC
Q 048741 241 KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNINPP 309 (314)
Q Consensus 241 kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~~p~ 309 (314)
+||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||+......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~ 66 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF----NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKGE 66 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH----CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCCSS
T ss_pred CCCCCCCcCHHHHHHHHHHHcc----CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccccCC
Confidence 5889999999999999999999 9999999999999999999999999999999999998866543
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.72 E-value=1.3e-18 Score=127.51 Aligned_cols=60 Identities=27% Similarity=0.434 Sum_probs=53.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 240 VKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 240 ~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
.+||.||.||.+|+..|+..|+. ++||+..++++||.++||++.+|+|||||||+|+||.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNE----NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 36889999999999999999999 9999999999999999999999999999999999974
No 18
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.72 E-value=1.8e-18 Score=132.45 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNI 306 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~ 306 (314)
.++||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||+...
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQ----QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 457889999999999999999999 9999999999999999999999999999999999987543
No 19
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.71 E-value=1.8e-18 Score=128.55 Aligned_cols=63 Identities=19% Similarity=0.361 Sum_probs=59.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCC
Q 048741 240 VKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNI 306 (314)
Q Consensus 240 ~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~ 306 (314)
++||.||.||.+|+..|+..|+. ++||+..++++||.++||++.+|+|||||+|+|+||++..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 64 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAA----NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIM 64 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhhh
Confidence 46889999999999999999999 9999999999999999999999999999999999998753
No 20
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=2.8e-18 Score=129.58 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNI 306 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~ 306 (314)
.++||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||++..
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQK----THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 467889999999999999999999 9999999999999999999999999999999999998765
No 21
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=2.5e-18 Score=129.26 Aligned_cols=63 Identities=13% Similarity=0.227 Sum_probs=59.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCC
Q 048741 240 VKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNI 306 (314)
Q Consensus 240 ~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~ 306 (314)
..||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||....
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFET----QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPS 68 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCC
Confidence 56789999999999999999999 9999999999999999999999999999999999998753
No 22
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=1.4e-18 Score=133.88 Aligned_cols=61 Identities=23% Similarity=0.359 Sum_probs=58.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 240 VKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 240 ~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
.+||.||.||.+|+..|+.+|+. ++||+..++++||.+|||++.+|+|||||||+|+||++
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFER----THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 56889999999999999999999 99999999999999999999999999999999999876
No 23
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.71 E-value=2.5e-18 Score=136.62 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCCCCC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNINPP 309 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~~p~ 309 (314)
.++||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||+......
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~ 81 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHK----QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEERE 81 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHH
Confidence 467889999999999999999999 9999999999999999999999999999999999998765543
No 24
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.71 E-value=4.9e-18 Score=128.99 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNI 306 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~ 306 (314)
.+.||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYAT----NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHH----TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhh----CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 356889999999999999999999 9999999999999999999999999999999999998644
No 25
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5e-18 Score=129.67 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=60.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCCCCC
Q 048741 241 KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNINPP 309 (314)
Q Consensus 241 kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~~p~ 309 (314)
.++.||.||.+|++.|+..|++ ++||+..++++||.++||++.+|+|||||||+|+||+......
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~----~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~~~ 72 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCR----NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSRSG 72 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH----SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccCCC
Confidence 4567999999999999999999 9999999999999999999999999999999999998765544
No 26
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.70 E-value=3.2e-18 Score=136.36 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
...+|.||.||.+|+..|+.+|++ ++||+..++++||.+|||++.+|||||||||+|+||++
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVR----TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 456789999999999999999999 99999999999999999999999999999999999875
No 27
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.70 E-value=3.1e-18 Score=132.63 Aligned_cols=62 Identities=16% Similarity=0.292 Sum_probs=55.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCC
Q 048741 240 VKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNN 305 (314)
Q Consensus 240 ~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~ 305 (314)
.+||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||+.+
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHT----NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCcccCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 46889999999999999999999 999999999999999999999999999999999999864
No 28
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=3.7e-18 Score=123.48 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhh
Q 048741 242 KRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAK 302 (314)
Q Consensus 242 KR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KK 302 (314)
||.||.||.+|+..|+..|+. ++||+..++++||.++||++.+|+|||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ----KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999 999999999999999999999999999999999987
No 29
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.69 E-value=2.9e-18 Score=128.39 Aligned_cols=63 Identities=14% Similarity=0.267 Sum_probs=59.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCCC
Q 048741 241 KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNIN 307 (314)
Q Consensus 241 kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~~ 307 (314)
+||.||.||.+|+..|+..|+. ++||+..++++||.++||++.+|+|||||||+|+||+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ----GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 5789999999999999999999 99999999999999999999999999999999999886544
No 30
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.69 E-value=6.4e-18 Score=126.56 Aligned_cols=63 Identities=13% Similarity=0.257 Sum_probs=59.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCCC
Q 048741 241 KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNIN 307 (314)
Q Consensus 241 kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~~ 307 (314)
+||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ----QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH----SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 5789999999999999999999 99999999999999999999999999999999999987543
No 31
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.69 E-value=4.9e-18 Score=123.96 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 242 KRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 242 KR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
||.||.||.+|+..|+..|+. ++||+..++++||.++||++.+|+|||||+|+|+||+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK----ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 688999999999999999999 9999999999999999999999999999999999986
No 32
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.69 E-value=1.5e-18 Score=129.84 Aligned_cols=63 Identities=17% Similarity=0.325 Sum_probs=60.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCC
Q 048741 240 VKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNI 306 (314)
Q Consensus 240 ~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~ 306 (314)
++||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||++..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQR----NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTT----CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 46889999999999999999999 9999999999999999999999999999999999998764
No 33
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.69 E-value=3.5e-18 Score=133.81 Aligned_cols=61 Identities=18% Similarity=0.265 Sum_probs=55.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 240 VKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 240 ~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
..||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||++
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHF----NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 56889999999999999999999 99999999999999999999999999999999999876
No 34
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.69 E-value=6.1e-18 Score=129.48 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNN 305 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~ 305 (314)
...||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||...
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLF----NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 356889999999999999999999 999999999999999999999999999999999998753
No 35
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.69 E-value=5.7e-18 Score=130.58 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
.++||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||+.
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFER----TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 467889999999999999999999 99999999999999999999999999999999999875
No 36
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-17 Score=126.11 Aligned_cols=61 Identities=10% Similarity=0.152 Sum_probs=57.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCCC
Q 048741 243 RFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNIN 307 (314)
Q Consensus 243 R~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~~ 307 (314)
++|+.||.+|+..|+.+|++ ++||+..++++||.++||++.+|+|||||||+|+||++...
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ----NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCccCCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 46778999999999999999 99999999999999999999999999999999999987543
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.68 E-value=8.8e-18 Score=125.09 Aligned_cols=61 Identities=21% Similarity=0.366 Sum_probs=58.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCC
Q 048741 242 KRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNI 306 (314)
Q Consensus 242 KR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~ 306 (314)
||.||.||.+|+..|+..|+. ++||+..++++||.++||++.+|+|||||||+|+||+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV----NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 789999999999999999999 9999999999999999999999999999999999988754
No 38
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.67 E-value=8e-18 Score=120.88 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=55.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhh
Q 048741 241 KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLA 301 (314)
Q Consensus 241 kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~K 301 (314)
+||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ----QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 5789999999999999999999 99999999999999999999999999999999976
No 39
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-17 Score=125.28 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=59.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCCC
Q 048741 241 KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNIN 307 (314)
Q Consensus 241 kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~~ 307 (314)
.++.||.||.+|+..|+..|++ ++||+..++++||.++||++.+|||||||||+|+||++...
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 68 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLK----NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 68 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSC
T ss_pred CCCCCcCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCC
Confidence 4778999999999999999999 99999999999999999999999999999999999987554
No 40
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=1.1e-17 Score=133.42 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNN 305 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~ 305 (314)
...||.||.||.+|+..|+.+|+. ++||+..++++||.+|||++.+|+|||||||+|+||++.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHF----NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 356889999999999999999999 999999999999999999999999999999999999865
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.66 E-value=1.5e-17 Score=121.37 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCC
Q 048741 244 FRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNN 305 (314)
Q Consensus 244 ~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~ 305 (314)
.||.||.+|+..|+..|+. ++||+..++++||.++||++.+|+|||||||+|+||++.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR----THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 4899999999999999999 999999999999999999999999999999999999864
No 42
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=2.6e-17 Score=130.74 Aligned_cols=64 Identities=16% Similarity=0.249 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhC---------------CCCCeeeeecccccchhhhc
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIG---------------VKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiG---------------v~~~vVKVWFQNRRaK~KKk 303 (314)
.++||.||.||.+|+..|+.+|++ ++||+..++++||.+++ |++.+|+|||||||+|+||+
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~----~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNE----NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999 99999999999999999 99999999999999999988
Q ss_pred CCC
Q 048741 304 NNI 306 (314)
Q Consensus 304 ~~~ 306 (314)
...
T Consensus 81 ~~~ 83 (95)
T 2cuf_A 81 ANI 83 (95)
T ss_dssp HHC
T ss_pred hhc
Confidence 643
No 43
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=3.2e-17 Score=124.32 Aligned_cols=63 Identities=10% Similarity=0.138 Sum_probs=58.5
Q ss_pred CCCCCCCCHHHHHHHHHHHH-HcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCCCC
Q 048741 242 KRFRTKFTQEQKEKMFNFAE-KVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNINP 308 (314)
Q Consensus 242 KR~RT~FT~eQk~~Le~~Fe-rlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~~p 308 (314)
++.||.||.+|+..|+.+|+ . ++||+..++++||.++||++.+|+|||||||+|+||++....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~----~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~~~ 66 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV----NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPS 66 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT----TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccCCC
Confidence 46799999999999999999 7 899999999999999999999999999999999999875443
No 44
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.65 E-value=2.2e-17 Score=120.53 Aligned_cols=58 Identities=9% Similarity=0.210 Sum_probs=48.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhh
Q 048741 240 VKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLA 301 (314)
Q Consensus 240 ~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~K 301 (314)
++||.||.||.+|+..|+..|+. ++||+..++++||.++||++.+|+|||||+|+++|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~----~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRR----KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh----CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 56889999999999999999999 99999999999999999999999999999999875
No 45
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=4.2e-17 Score=123.17 Aligned_cols=63 Identities=10% Similarity=0.157 Sum_probs=58.1
Q ss_pred CCCCCCCCHHHHHHHHHHHH-HcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCCCC
Q 048741 242 KRFRTKFTQEQKEKMFNFAE-KVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNINP 308 (314)
Q Consensus 242 KR~RT~FT~eQk~~Le~~Fe-rlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~~p 308 (314)
.+.||.||.+|+..|+.+|+ . ++||+..++++||.++||++.+|+|||||||+|+||++....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~~~ 65 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKV----NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPS 65 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSS----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCccCCHHHHHHHHHHHHcc----CCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccCCC
Confidence 35789999999999999999 6 899999999999999999999999999999999999875544
No 46
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=4e-17 Score=127.07 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=54.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 244 FRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 244 ~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
.|++||.+|+..|+..|++ ++||+..+|++||.++||++.+|||||||+|+|+||.+
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~----~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQ----CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 4667999999999999999 99999999999999999999999999999999999875
No 47
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=125.52 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=55.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCCCC
Q 048741 245 RTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNINP 308 (314)
Q Consensus 245 RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~~p 308 (314)
+..||.+|++.|+..|++ ++||+..++++||.++||++.+|+|||||||+|+|+++....
T Consensus 17 ~k~~t~~Ql~~Le~~F~~----~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~ 76 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLK----SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVL 76 (89)
T ss_dssp CCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCC
T ss_pred cccCCHHHHHHHHHHHcc----CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhh
Confidence 345999999999999999 999999999999999999999999999999999998875543
No 48
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.64 E-value=3.7e-17 Score=141.19 Aligned_cols=62 Identities=15% Similarity=0.302 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
.++||.||.||.+|+..|+.+|++ ++||+..+|++||.++||++.+|||||||||+|+||++
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 160 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFME----NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 160 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCcCccccCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhccC
Confidence 467899999999999999999999 99999999999999999999999999999999999874
No 49
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=3e-17 Score=120.98 Aligned_cols=59 Identities=10% Similarity=0.193 Sum_probs=56.2
Q ss_pred CCCCCCCCCHHHHHHHHHHH---HHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 241 KKRFRTKFTQEQKEKMFNFA---EKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 241 kKR~RT~FT~eQk~~Le~~F---erlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
.||.||.||.+|++.|+.+| .. ++||+..++++||.++||++.+|+|||||+|+|+||+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~----~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLS----NPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTT----SCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHccc----CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 57899999999999999999 77 9999999999999999999999999999999999874
No 50
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.63 E-value=4.3e-17 Score=117.81 Aligned_cols=55 Identities=11% Similarity=0.223 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 246 TKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 246 T~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
|.||.+|+..|+..|++ ++||+..++++||.++||++.+|+|||||||+|+||+.
T Consensus 2 T~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 56 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR----QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQT 56 (56)
T ss_dssp --CCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CccCHHHHHHHHHHHHh----cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcccC
Confidence 68999999999999999 99999999999999999999999999999999999863
No 51
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=6.1e-17 Score=124.48 Aligned_cols=60 Identities=13% Similarity=0.241 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhh
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLA 301 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~K 301 (314)
..+||.||.||.+|+..|+.+|+.| +.|||..+|++|+.++||++++|||||||+|--.+
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~---~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDV---GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 4679999999999999999999985 68999999999999999999999999999997654
No 52
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.63 E-value=7.8e-17 Score=121.80 Aligned_cols=63 Identities=14% Similarity=0.256 Sum_probs=58.6
Q ss_pred CCCCCCCCCHHHHHHHHHHH---HHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCCC
Q 048741 241 KKRFRTKFTQEQKEKMFNFA---EKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNIN 307 (314)
Q Consensus 241 kKR~RT~FT~eQk~~Le~~F---erlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~~ 307 (314)
.||.||.||.+|++.|+.+| .. ++||+..++++||.++||++.+|+|||||+|+|+||+....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~----~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLS----NPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTT----SCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhcc----CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 37899999999999999999 77 99999999999999999999999999999999999887543
No 53
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.62 E-value=6.4e-17 Score=140.77 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=52.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCC
Q 048741 238 QLVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNI 306 (314)
Q Consensus 238 ~~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~ 306 (314)
..++||.||.||.+|+..|+.+|++ ++||+..+|++||.++||++.+|+|||||||+|+||+...
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLK----CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 3467889999999999999999999 9999999999999999999999999999999999998754
No 54
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.61 E-value=8.9e-17 Score=137.21 Aligned_cols=62 Identities=16% Similarity=0.344 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
.++||.||.||.+|+..|+..|++ ++||+..++++||.++||++.+|+|||||||+|+||++
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGE----HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhccC
Confidence 467889999999999999999999 99999999999999999999999999999999999874
No 55
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=2.7e-16 Score=125.35 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCCC
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNIN 307 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~~ 307 (314)
.||.+|+..|+..|.. ++|++..+|++||.+|||++.+|||||||||+|++|++...
T Consensus 17 ~~t~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLN----SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred cCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHh
Confidence 8999999999999999 99999999999999999999999999999999999876443
No 56
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.61 E-value=9.1e-17 Score=124.97 Aligned_cols=59 Identities=15% Similarity=0.302 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHHH---HHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 242 KRFRTKFTQEQKEKMFNFA---EKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 242 KR~RT~FT~eQk~~Le~~F---erlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
||.||.||.+|++.|+.+| .. ++||+..++++||.++||++.+|+|||||+|+|+||+.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~----~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLS----NPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTT----SCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc----CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcc
Confidence 7889999999999999999 77 99999999999999999999999999999999999875
No 57
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=3e-16 Score=118.56 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNN 305 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~ 305 (314)
.+.||.||.||.+|+..|+..|+. -+.++||+..++++||.++||++.+|+|||||+|+|+||...
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~-~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQ-HIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 356889999999999999999974 234799999999999999999999999999999999998754
No 58
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.60 E-value=4.4e-16 Score=121.27 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=58.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 240 VKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 240 ~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
++||.||.||.+|+..|+..|.. -+.++||+..++++||.++||++.+|+|||||+|+|+||+.
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~-~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYK-HRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHH-TTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 57889999999999999999986 33459999999999999999999999999999999998764
No 59
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.58 E-value=4.5e-16 Score=132.93 Aligned_cols=60 Identities=25% Similarity=0.453 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhh
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAK 302 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KK 302 (314)
.++||.||.||.+|+..|+..|++ ++||+..++++||.++||++.+|+|||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEK----NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 467889999999999999999999 999999999999999999999999999999999987
No 60
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.1e-16 Score=128.28 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHh---------------------CCCCCeeeeeccccc
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEI---------------------GVKRRVLKVWMHNNK 297 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~ei---------------------Gv~~~vVKVWFQNRR 297 (314)
.++||.||.||.+|+..|+.+|++ ++||+..+|++||.++ +|++.+|+|||||||
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~----~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR 79 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDR----QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 79 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcC----CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchH
Confidence 467899999999999999999999 9999999999999999 799999999999999
Q ss_pred chhhhcC
Q 048741 298 HNLAKKN 304 (314)
Q Consensus 298 aK~KKk~ 304 (314)
+++|++.
T Consensus 80 ~k~kr~~ 86 (102)
T 2da6_A 80 KEEAFRQ 86 (102)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999876
No 61
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.57 E-value=2.8e-16 Score=127.20 Aligned_cols=64 Identities=17% Similarity=0.323 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHH------------------hC---CCCCeeeeeccccc
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQE------------------IG---VKRRVLKVWMHNNK 297 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~e------------------iG---v~~~vVKVWFQNRR 297 (314)
.++||.||.||.+|+..|+.+|++ ++||+..+|++||.+ || |++.+|+|||||||
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~----~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYER----QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHH
Confidence 467889999999999999999999 999999999999999 88 99999999999999
Q ss_pred chhhhcCCC
Q 048741 298 HNLAKKNNI 306 (314)
Q Consensus 298 aK~KKk~~~ 306 (314)
+++|++...
T Consensus 83 ~k~k~k~~~ 91 (99)
T 1lfb_A 83 KEEAFRHKL 91 (99)
T ss_dssp HTTSCCC--
T ss_pred HHHHHhchh
Confidence 999887643
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.56 E-value=8.5e-16 Score=120.00 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=57.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhh
Q 048741 240 VKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAK 302 (314)
Q Consensus 240 ~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KK 302 (314)
.++|.||.||.+|+..|+..|.. .+.++||+..++++||.++||++.+|+|||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~-~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAK-NIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHH-TTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHH-hCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 46677999999999999999986 677899999999999999999999999999999999874
No 63
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.55 E-value=1.2e-15 Score=111.01 Aligned_cols=59 Identities=14% Similarity=0.225 Sum_probs=54.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 244 FRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 244 ~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
+||.||.+|++.|+..|+. .+.++||+..++++||.++||++.+|+|||||+|+|+||.
T Consensus 1 rr~~ft~~q~~~Le~~f~~-~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAK-NIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHH-cCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4789999999999999986 5557999999999999999999999999999999999985
No 64
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.55 E-value=3.9e-16 Score=119.03 Aligned_cols=59 Identities=7% Similarity=0.155 Sum_probs=54.6
Q ss_pred CCCCCCCCHHHHHHHHHHH-HHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 242 KRFRTKFTQEQKEKMFNFA-EKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 242 KR~RT~FT~eQk~~Le~~F-erlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
.+.|+.++.+|++.|+.+| +. ++||+..++++||.++||++.+|||||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~----~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV----TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4566678899999999999 88 99999999999999999999999999999999999765
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.54 E-value=1.6e-15 Score=117.84 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=56.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCC
Q 048741 241 KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNN 305 (314)
Q Consensus 241 kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~ 305 (314)
+++.|+.||.+|+..|+..|.. .+.++||+..++++||.++||++.+|+|||||+|+|+||+..
T Consensus 2 K~krr~rft~~q~~~Le~~f~~-h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAK-NIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH-TSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh-hCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 3456777999999999999985 566899999999999999999999999999999999998763
No 66
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.54 E-value=1.3e-15 Score=131.23 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCC
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNI 306 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~ 306 (314)
.++||.||.||.+|+..|+..|++ ++||+..++++||.++||++.+|+|||||||+|+||....
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKE----NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 357889999999999999999999 9999999999999999999999999999999999987643
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.52 E-value=2.3e-15 Score=114.59 Aligned_cols=57 Identities=9% Similarity=0.183 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCCC
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNIN 307 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~~ 307 (314)
.+|.+|+..|+..|++ ++||+..+|++||.++||++.+|||||||||+|+||++...
T Consensus 10 ~~t~~ql~~LE~~F~~----~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~ 66 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH----QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSS 66 (69)
T ss_dssp CCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSC
T ss_pred cCCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhh
Confidence 6799999999999999 99999999999999999999999999999999999987543
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.52 E-value=1.1e-15 Score=131.56 Aligned_cols=61 Identities=18% Similarity=0.357 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
.++||.||.||.+|+..|+.+|++ ++||+..++++||.++||++.+|||||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLK----SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTT----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHcc----CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 357889999999999999999999 9999999999999999999999999999999999984
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.8e-15 Score=112.07 Aligned_cols=55 Identities=5% Similarity=0.096 Sum_probs=51.2
Q ss_pred CCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 246 TKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 246 T~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
..++.+|+..|+.+|++ ++||+..+|++||.++||++.+|||||||||+|.++.+
T Consensus 8 ~~p~~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~ 62 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYAL----NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ 62 (64)
T ss_dssp CCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSS
T ss_pred CCccHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCC
Confidence 34579999999999999 99999999999999999999999999999999988754
No 70
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.47 E-value=7.9e-15 Score=111.61 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 248 FTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 248 FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
-|.+|+..|+..|.+ ++||+..++++||..+||++.+|+|||||||+|+|+-
T Consensus 11 ~~~~Ql~~LE~~F~~----~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQ----SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHG----GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 378999999999999 9999999999999999999999999999999999974
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.40 E-value=2.5e-14 Score=107.99 Aligned_cols=51 Identities=6% Similarity=0.214 Sum_probs=46.8
Q ss_pred HHHHHHHHHHH-HHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 250 QEQKEKMFNFA-EKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 250 ~eQk~~Le~~F-erlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
.+|+..||.+| .. +.||+..+|.+||.+|||++++|||||||||+|+|+-.
T Consensus 9 ~~~~~~LE~~F~~~----~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 9 AQPNAILEKVFTAI----TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SCHHHHHHHHHHTT----CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred chHHHHHHHHHHHc----CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 35899999999 56 78999999999999999999999999999999998755
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.37 E-value=9.8e-14 Score=104.14 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCC
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNI 306 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~ 306 (314)
+||.+|+..|+..|.. -+.++||+..++++||.++||++.+|+|||||+|+|+||....
T Consensus 4 ~f~~~~~~~L~~~f~~-h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQ-HLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 7999999999999991 1229999999999999999999999999999999999987543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.36 E-value=4.8e-14 Score=126.31 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhC---------------------CCCCeeeeeccccc
Q 048741 239 LVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIG---------------------VKRRVLKVWMHNNK 297 (314)
Q Consensus 239 ~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiG---------------------v~~~vVKVWFQNRR 297 (314)
.++||.||.||..|+..|+.+|++ ++||+..+|++||.+++ |++.+|+|||||||
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~----~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR 188 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYER----QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 188 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHH----HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHH
T ss_pred ccCCCCCcccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhh
Confidence 467899999999999999999999 99999999999999999 99999999999999
Q ss_pred chhhhc
Q 048741 298 HNLAKK 303 (314)
Q Consensus 298 aK~KKk 303 (314)
+++|.|
T Consensus 189 ~~~k~~ 194 (194)
T 1ic8_A 189 KEEAFR 194 (194)
T ss_dssp HHCC--
T ss_pred hhhhcC
Confidence 998764
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-12 Score=101.00 Aligned_cols=52 Identities=8% Similarity=0.209 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCC
Q 048741 250 QEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNN 305 (314)
Q Consensus 250 ~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~ 305 (314)
.+|+..|+++|+. +.+|+..++++||..+||+++||||||||||+...-.+.
T Consensus 14 k~ql~~Lk~yF~~----n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~~~~~~ 65 (71)
T 2da7_A 14 KDHMSVLKAYYAM----NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQYSNSR 65 (71)
T ss_dssp THHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCC
Confidence 4799999999999 999999999999999999999999999999985544433
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.24 E-value=1.5e-12 Score=119.10 Aligned_cols=60 Identities=13% Similarity=0.251 Sum_probs=53.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhC---------------------CCCCeeeeecccc
Q 048741 238 QLVKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIG---------------------VKRRVLKVWMHNN 296 (314)
Q Consensus 238 ~~~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiG---------------------v~~~vVKVWFQNR 296 (314)
..++||.||+|+.+|+..|+.+|++ ++||+..+|++|+.+++ |++.+|+||||||
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~----~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNR 214 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDR----QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 214 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHH
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHh
Confidence 4567899999999999999999999 99999999999999988 8899999999999
Q ss_pred cchhh
Q 048741 297 KHNLA 301 (314)
Q Consensus 297 RaK~K 301 (314)
|++..
T Consensus 215 R~~~~ 219 (221)
T 2h8r_A 215 RKEEA 219 (221)
T ss_dssp HTTCC
T ss_pred hhhhh
Confidence 98754
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.14 E-value=3.8e-12 Score=118.93 Aligned_cols=57 Identities=9% Similarity=0.205 Sum_probs=54.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhh
Q 048741 241 KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLA 301 (314)
Q Consensus 241 kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~K 301 (314)
.++.|+.|+.+|++.|+..|++ ++||+..+|++||.++||+++||||||||||+|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~----~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRR----KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhc----CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3567889999999999999999 99999999999999999999999999999999986
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.00 E-value=7.5e-11 Score=94.30 Aligned_cols=58 Identities=10% Similarity=0.088 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 246 TKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 246 T~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
..|+.++++.|++.|.. -+.++||+..++++||.++||++.+|++||+|+|.|++|+.
T Consensus 10 ~~l~~~~~~iL~~W~~~-h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYE-HRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHH-TSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 46899999999999875 35589999999999999999999999999999999998653
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.36 E-value=3.1e-08 Score=67.55 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=17.0
Q ss_pred CeeeeecccccchhhhcCC
Q 048741 287 RVLKVWMHNNKHNLAKKNN 305 (314)
Q Consensus 287 ~vVKVWFQNRRaK~KKk~~ 305 (314)
++|||||||||+|+||++.
T Consensus 1 rQVkIWFQNRRaK~Kk~~~ 19 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVF 19 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHH
T ss_pred CCceeccHHHHHHHHHHhH
Confidence 4799999999999999874
No 79
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=88.97 E-value=0.22 Score=37.68 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=35.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccc
Q 048741 241 KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHN 295 (314)
Q Consensus 241 kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQN 295 (314)
+|+.|.+||.+++......++. |. ...++|+++||++.+|.-|...
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~-g~--------s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHD-GE--------SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHH-TC--------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHC-CC--------CHHHHHHHHCcCHHHHHHHHHH
Confidence 4556779999998877777654 21 3568899999999999999853
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=88.07 E-value=0.17 Score=35.67 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccc
Q 048741 245 RTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHN 295 (314)
Q Consensus 245 RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQN 295 (314)
|.+||.|++..+..+++. . ........++|.++||+..+|.-|...
T Consensus 3 r~~ys~efK~~~~~~~~~----g-~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN----D-NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH----C-TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc----C-CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 457999999988666554 1 111112668999999999999999753
No 81
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.86 E-value=0.13 Score=39.33 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecc
Q 048741 254 EKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMH 294 (314)
Q Consensus 254 ~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQ 294 (314)
+.|+++|.. -....+...+.||.+.+|+-.+||-||-
T Consensus 19 e~L~~Yy~~----hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 19 QPLERYWAA----HQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp HHHHHHHHH----TCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred hHHHHHHHH----hcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 578999999 7889999999999999999999999994
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=85.66 E-value=0.3 Score=38.71 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccc
Q 048741 244 FRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKH 298 (314)
Q Consensus 244 ~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRa 298 (314)
.|..||.+++.++...++. .... ...++|+++||++.+|.-|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~----~g~~---~~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEE----NPDL---RKGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHH----CTTS---CHHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHH----CCCC---cHHHHHHHhCCCHHHHHHHHhchhh
Confidence 5778999999999888865 3322 2347899999999999999987654
No 83
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=82.27 E-value=0.55 Score=29.89 Aligned_cols=41 Identities=7% Similarity=0.275 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccc
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNN 296 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNR 296 (314)
.++.+++..+..++.. |+ ...++|+.+||++.+|+-|++.-
T Consensus 5 ~l~~~~~~~i~~~~~~-g~--------s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL-NV--------SLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCCHHHHHHHHHHHHT-TC--------CHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHc-CC--------CHHHHHHHHCcCHHHHHHHHhhH
Confidence 5788888777766654 32 35689999999999999998643
No 84
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=80.52 E-value=0.37 Score=31.42 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
.++.++++.+..+++. |+ ...++|..+||++.+|.-|+....
T Consensus 5 ~~~~~~~~~i~~l~~~-g~--------s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEK-GH--------PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHT-TC--------CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHc-CC--------CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 4677777777766554 32 356899999999999999997543
No 85
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=72.90 E-value=0.58 Score=35.92 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcCCC
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNI 306 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~~~ 306 (314)
.+|..|++.|..+++- + ...++|..+|+++.+|+.+.++-+.|++.....
T Consensus 27 ~Lt~~e~~vl~l~~~g--~--------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~ 76 (95)
T 3c57_A 27 GLTDQERTLLGLLSEG--L--------TNKQIADRMFLAEKTVKNYVSRLLAKLGMERRT 76 (95)
T ss_dssp CCCHHHHHHHHHHHTT--C--------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred cCCHHHHHHHHHHHcC--C--------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHH
Confidence 5899999998876433 2 346899999999999999998888777765543
No 86
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=72.64 E-value=0.88 Score=34.46 Aligned_cols=43 Identities=26% Similarity=0.550 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHHHc-CcccCCCCHHHHHHHHHHhCCCCCeeeeeccc
Q 048741 245 RTKFTQEQKEKMFNFAEKV-GWKIQKQEESVVQQFCQEIGVKRRVLKVWMHN 295 (314)
Q Consensus 245 RT~FT~eQk~~Le~~Ferl-GWr~~~pd~~~reeLa~eiGv~~~vVKVWFQN 295 (314)
|.+||.+++......+..- | ....++|.++||+..+|.-|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g--------~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG--------ASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG--------SCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC--------ChHHHHHHHHCcCHHHHHHHHHH
Confidence 4579999998877666431 2 23668999999999999999853
No 87
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=71.70 E-value=2.2 Score=35.13 Aligned_cols=48 Identities=10% Similarity=0.225 Sum_probs=36.8
Q ss_pred CCCCCCCCHHHHHHHHHHH-HHcCcccCCCCHHHHHHHHH----Hh--CCCCCeeeeecccc
Q 048741 242 KRFRTKFTQEQKEKMFNFA-EKVGWKIQKQEESVVQQFCQ----EI--GVKRRVLKVWMHNN 296 (314)
Q Consensus 242 KR~RT~FT~eQk~~Le~~F-erlGWr~~~pd~~~reeLa~----ei--Gv~~~vVKVWFQNR 296 (314)
++.|..+|-+|+.+|..++ +. +..... .+||. +. +|++.+|.-|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~----~~~~~q---~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL----QNRSGQ---QDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS----SSCCCH---HHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh----CCCCCH---HHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 6789999999999999999 55 444433 34455 77 89999999998664
No 88
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=70.39 E-value=1.9 Score=33.18 Aligned_cols=49 Identities=16% Similarity=0.376 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccCCCC-HHHHHHHHHHhCCCCCeeeeeccc
Q 048741 245 RTKFTQEQKEKMFNFAEKVGWKIQKQE-ESVVQQFCQEIGVKRRVLKVWMHN 295 (314)
Q Consensus 245 RT~FT~eQk~~Le~~FerlGWr~~~pd-~~~reeLa~eiGv~~~vVKVWFQN 295 (314)
|.+||.+++..+...+..-|+ .+.. .....++|.++||+..+|.-|..-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~--~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQG--EYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhccc--ccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 447999999887766543110 0111 136778999999999999999753
No 89
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=67.80 E-value=1.7 Score=31.57 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHHcC-cccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 245 RTKFTQEQKEKMFNFAEKVG-WKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 245 RT~FT~eQk~~Le~~FerlG-Wr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
|+.++.++.+.+..+.++|- +|... ..++||..+||+..+|.-|..+++
T Consensus 3 ~~~~~~~~~~~~~~~g~~l~~~R~~~----sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 3 RVPLTAEELERGQRLGELLRSARGDM----SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTS----CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 56788888877766655432 23333 456899999999999998887765
No 90
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=66.00 E-value=2.1 Score=33.51 Aligned_cols=43 Identities=7% Similarity=0.269 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 246 TKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 246 T~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
..+|.+++..+..+++. ||. ..++|+.+|+++.+|.-|++..+
T Consensus 5 ~~~s~~~r~~i~~~~~~-G~s--------~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL-NVS--------LHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp CCCCHHHHHHHHHHHHT-TCC--------HHHHHHHHTCCHHHHHHHHHSGG
T ss_pred ccCCHHHHHHHHHHHHc-CCC--------HHHHHHHHCcCHHHHHHHHHccc
Confidence 46899999988888754 542 45789999999999999997543
No 91
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=65.90 E-value=0.61 Score=34.83 Aligned_cols=49 Identities=10% Similarity=0.178 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 245 RTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 245 RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
-..+|..|++.|..+++- ....++|..+|+++.+|+.+.++-+.|++.+
T Consensus 19 ~~~Lt~~e~~vl~l~~~g----------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQG----------LPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GGGSCHHHHHHHHHHTTT----------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred HccCCHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 346899999988764322 2456899999999999999988777666544
No 92
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=65.25 E-value=4 Score=33.25 Aligned_cols=43 Identities=7% Similarity=0.175 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 246 TKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 246 T~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
..||.+++..+..+++. || ...++|+++||++.+|.-|++..+
T Consensus 24 ~~~s~e~r~~ii~l~~~-G~--------s~~~IA~~lgis~~TV~rwl~r~~ 66 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQ-GV--------RPCDISRQLRVSHGCVSKILGRYY 66 (159)
T ss_dssp CSSCHHHHHHHHHHHHH-TC--------CHHHHHHHHTCCSHHHHHHHCCSS
T ss_pred CCCCHHHHHHHHHHHHc-CC--------CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 36899999998888864 43 245789999999999999997644
No 93
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=63.60 E-value=0.48 Score=35.80 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
.++..|++.|...|-. | ....++|..+|++..+|+.+.+.-|.|+|+.
T Consensus 37 ~L~~~~r~vl~l~~~~-g--------~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR-G--------WSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTS-C--------CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-C--------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4667777777643322 1 2456899999999999999998877777654
No 94
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=59.21 E-value=1 Score=31.82 Aligned_cols=48 Identities=10% Similarity=0.224 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhh
Q 048741 245 RTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAK 302 (314)
Q Consensus 245 RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KK 302 (314)
-..+|..|++.|..+++. + ...++|..+|++..+|+.++++-+.|++.
T Consensus 9 ~~~L~~~e~~il~~~~~g--~--------s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFELLVQD--K--------TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHHHTTT--C--------CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHcC--C--------CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 446899999988775332 1 45689999999999999988866665554
No 95
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=58.72 E-value=2.9 Score=31.71 Aligned_cols=40 Identities=10% Similarity=0.219 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccc
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHN 295 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQN 295 (314)
.++.+++..+..++.. ||. ..++|..+|+++.+|.-|+..
T Consensus 17 ~~s~~~r~~i~~~~~~-g~s--------~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD-GIR--------PCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHHT-TCC--------HHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-CCC--------HHHHHHHHCcCHHHHHHHHHH
Confidence 5899999998888753 443 357899999999999999874
No 96
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=58.71 E-value=2.2 Score=33.41 Aligned_cols=47 Identities=15% Similarity=0.319 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhh
Q 048741 245 RTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLA 301 (314)
Q Consensus 245 RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~K 301 (314)
...+|..|++.|..+++ |+ ..+++|..+|+++.+|+.+.++=+.|+.
T Consensus 32 ~~~Lt~re~~Vl~l~~~--G~--------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE--GF--------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHH--TC--------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 34689999999977654 33 2368999999999999999886655554
No 97
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=57.57 E-value=0.71 Score=34.82 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 246 TKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 246 T~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
..+|..|++.|..+++ |+.. .++|..+|++..+|+.+..+-+.|++.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~s~--------~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 76 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GYSN--------QEIASASHITIKTVKTHVSNILSKLEVQD 76 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TCCT--------THHHHHHTCCHHHHHHHHHHHHHHTTCCS
T ss_pred hcCCHHHHHHHHHHHc--CCCH--------HHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 4689999999877543 3333 38999999999999999987777766543
No 98
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=53.79 E-value=0.95 Score=32.55 Aligned_cols=47 Identities=11% Similarity=0.246 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
.+|..|++.|..+++ |+ ...++|..+|++..+|+.++.+-+.|++..
T Consensus 16 ~L~~~e~~vl~l~~~--g~--------s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--GL--------PNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HHCHHHHHHHHHHTT--TC--------CHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred hCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 467778877766432 22 345899999999999999988777666644
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=53.75 E-value=2.1 Score=29.71 Aligned_cols=48 Identities=13% Similarity=0.150 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
.++..|++.+...|.. | ....++|..+|+++.+|+.|.+.-|.++++.
T Consensus 15 ~L~~~~r~il~l~~~~-g--------~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL-G--------LSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHTS-C--------CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHc-C--------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 5788888888765432 2 2356899999999999999998777776654
No 100
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=52.17 E-value=1.8 Score=30.71 Aligned_cols=52 Identities=8% Similarity=0.036 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
.++..|.+.|...|-..| -.....+++|..+|+++.+|+.+...-+.|+++.
T Consensus 5 ~L~~~er~il~l~~~l~~-----~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDM-----NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp CCCHHHHHHHHHHTTTTS-----SSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred cCCHHHHHHHHHHHccCC-----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 477888888876551100 1112457899999999999999988766666654
No 101
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=51.56 E-value=31 Score=27.64 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=33.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCcc-cCCCCHHHHHHHHHHhCCCCC
Q 048741 244 FRTKFTQEQKEKMFNFAEKVGWK-IQKQEESVVQQFCQEIGVKRR 287 (314)
Q Consensus 244 ~RT~FT~eQk~~Le~~FerlGWr-~~~pd~~~reeLa~eiGv~~~ 287 (314)
+|..+|.+|++.|+..|..+..- .-+.+..+...+.+.+|+...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 45689999999999999875432 336788888888888886654
No 102
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=51.03 E-value=4.9 Score=32.23 Aligned_cols=41 Identities=7% Similarity=0.233 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccc
Q 048741 246 TKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHN 295 (314)
Q Consensus 246 T~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQN 295 (314)
..||.+++..+..++.. ||. ..++|+.+||++.+|.-|++.
T Consensus 31 ~~~s~e~r~~iv~~~~~-G~s--------~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQ-GVR--------PCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHHT-TCC--------HHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc-CCC--------HHHHHHHHCcCHHHHHHHHHH
Confidence 36899999998888853 543 457899999999999999874
No 103
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=50.44 E-value=5.8 Score=29.59 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=46.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 241 KKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 241 kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
.|+.|-..|.|.-+...+..++|| ...-....+.++...-||+...|+.=.|.-|.+.+|.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG--~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLG--VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHC--TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhC--CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 356788899999999999999998 3334445556666666889999999888777777663
No 104
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=50.26 E-value=3.5 Score=32.97 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhh
Q 048741 246 TKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAK 302 (314)
Q Consensus 246 T~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KK 302 (314)
..++..|++.+...|.. | ....++|..+|+++.+|+.|++.-|.++++
T Consensus 21 ~~L~~~~r~vl~l~y~~-g--------~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYAD-D--------YSLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GGSCHHHHHHHHHHHHT-C--------CCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHc-C--------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 35788888888766543 2 245689999999999999999887777664
No 105
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=48.95 E-value=27 Score=24.28 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccc
Q 048741 248 FTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNN 296 (314)
Q Consensus 248 FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNR 296 (314)
.|.|||++|-+..-. .++..+|++...|.|.|+..
T Consensus 10 rt~eqK~~L~~~it~--------------~~~~~lg~~~~~v~V~i~E~ 44 (62)
T 3m20_A 10 LDVGKKREFVERLTS--------------VAAEIYGMDRSAITILIHEP 44 (62)
T ss_dssp CCHHHHHHHHHHHHH--------------HHHHHHTCCTTSCEEEEECC
T ss_pred CCHHHHHHHHHHHHH--------------HHHHHhCcCcceEEEEEEEe
Confidence 479999888644333 67888999999999988765
No 106
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=48.59 E-value=6.2 Score=26.68 Aligned_cols=36 Identities=14% Similarity=0.305 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 254 EKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 254 ~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
+.|+.+-+..||. ..+||..+|+++.+|.-|..+++
T Consensus 8 ~~l~~~r~~~g~s--------~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 8 ERIRARRKKLKIR--------QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHHHTCC--------HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHHcCCC--------HHHHHHHHCCCHHHHHHHHcCCC
Confidence 3455555665554 45789999999999988887654
No 107
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=48.54 E-value=1.8 Score=34.04 Aligned_cols=47 Identities=9% Similarity=0.166 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
.++..|++.|. +|-. | ...+++|..+|++..+|+.+++.-|.++|+.
T Consensus 109 ~L~~~~r~v~~-~~~~-g--------~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-G--------YSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTT-T--------CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-C--------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 46677777766 3222 2 2456899999999999999998777776653
No 108
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=48.36 E-value=25 Score=26.89 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 249 TQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 249 T~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
|.|||++|.+.+.+ .|++-+|.+...|+|-|..-.
T Consensus 14 T~EQKralaeE~T~--------------if~evLGcpPgsV~IVi~EV~ 48 (72)
T 3mb2_B 14 DRTRKQAFAAEASA--------------IFQRVIGTPPGRLQLIIQIVS 48 (72)
T ss_dssp CHHHHHHHHHHHHH--------------HHHHHHCCCTTCCEEEEEECC
T ss_pred CHHHHHHHHHHHHH--------------HHHHHhCCCCCcEEEEEEecC
Confidence 69999999877776 789999999999999997543
No 109
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=47.83 E-value=6.4 Score=32.37 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeee-eec
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLK-VWM 293 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVK-VWF 293 (314)
.+|.+++.++++.|..+.=+.-+.+..+..++-.+.||+..++. ||-
T Consensus 26 ~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw~ 73 (121)
T 3fia_A 26 AITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWA 73 (121)
T ss_dssp CCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHHH
Confidence 47999999999999986644556777788788788899887765 663
No 110
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=46.64 E-value=0.2 Score=42.26 Aligned_cols=29 Identities=7% Similarity=-0.181 Sum_probs=20.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcccCCCCH
Q 048741 240 VKKRFRTKFTQEQKEKMFNFAEKVGWKIQKQEE 272 (314)
Q Consensus 240 ~kKR~RT~FT~eQk~~Le~~FerlGWr~~~pd~ 272 (314)
+.||.||.||.+|++.|++.|+. +++++.
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~----~~~~~~ 163 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQA----NPVEVQ 163 (169)
T ss_dssp ------EEEECCCCEECCSSCCC----CCCCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhC----CCCccc
Confidence 45899999999999999999998 887753
No 111
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=45.27 E-value=5.7 Score=26.67 Aligned_cols=39 Identities=21% Similarity=0.418 Sum_probs=29.0
Q ss_pred CCC--HHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecc
Q 048741 247 KFT--QEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMH 294 (314)
Q Consensus 247 ~FT--~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQ 294 (314)
.++ .++.+.+..++.. |+ ...++|..+|+++.+|..|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~~-g~--------s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKM-GY--------TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHT-TC--------CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHc-CC--------CHHHHHHHHCcCHHHHHHHHH
Confidence 466 7777777766543 22 356899999999999998874
No 112
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=44.78 E-value=5.2 Score=27.39 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccc
Q 048741 254 EKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKH 298 (314)
Q Consensus 254 ~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRa 298 (314)
+.|+.+-+..||. ..+||..+||+..+|.-|..+++.
T Consensus 6 ~~l~~~r~~~gls--------q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 6 ERLKKRRIALKMT--------QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHHTTCC--------HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHHHcCCC--------HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 3455555555544 357899999999988888876543
No 113
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=44.27 E-value=25 Score=26.75 Aligned_cols=52 Identities=8% Similarity=0.044 Sum_probs=38.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCc-ccCCCCHHHHHHHHHHhCC--CCCeeeeecc
Q 048741 243 RFRTKFTQEQKEKMFNFAEKVGW-KIQKQEESVVQQFCQEIGV--KRRVLKVWMH 294 (314)
Q Consensus 243 R~RT~FT~eQk~~Le~~FerlGW-r~~~pd~~~reeLa~eiGv--~~~vVKVWFQ 294 (314)
+....++.+|+++|++.|..+.- ++-+.+..+...+.+.+|+ +...|+.+|+
T Consensus 25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34557899999999999988542 3456888899898998875 4455555553
No 114
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=44.20 E-value=27 Score=26.59 Aligned_cols=34 Identities=15% Similarity=0.347 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccc
Q 048741 249 TQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNN 296 (314)
Q Consensus 249 T~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNR 296 (314)
|.|||+.|-+. .-+..++.||.+...|+||.+.-
T Consensus 12 T~EQK~~lI~~--------------VT~a~~eslgap~esVrVlItE~ 45 (70)
T 3ej9_B 12 SVARKQQLIRD--------------VIDVTNKSIGSDPKIINVLLVEH 45 (70)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHHHCCCGGGCEEEEEEE
T ss_pred CHHHHHHHHHH--------------HHHHHHHHcCCChHHEEEEeeeC
Confidence 68999988532 34577999999999999999753
No 115
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=44.20 E-value=3.2 Score=32.96 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhh
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAK 302 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KK 302 (314)
.++..|++.+...|.. | ....++|..+|+++.+|+.+++.-|.++++
T Consensus 25 ~L~~~~r~vl~l~~~~-g--------~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE-D--------YSLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTS-C--------CCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-C--------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4677777776654332 1 245689999999999999999877777664
No 116
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=43.75 E-value=3.4 Score=36.58 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 245 RTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 245 RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
...++..|++.|.-.++- . ..+|+|..+|++..+||+..++-|.|++.+.
T Consensus 195 ~~~L~~~erevl~L~~~G--~--------s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 195 RNILSEREKEILRCIRKG--L--------SSKEIAATLYISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp TTSSCHHHHHHHHHHHTT--C--------CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred HccCCHHHHHHHHHHHcC--C--------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 357999999998875432 2 4568999999999999999998887777653
No 117
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=43.19 E-value=2.4 Score=34.60 Aligned_cols=49 Identities=10% Similarity=0.156 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhcC
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKN 304 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk~ 304 (314)
.++..|.+.|. ..|......+|+|..+|+++.+|+.+++.-|.++|+.-
T Consensus 93 ~Lp~~~r~vl~---------L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 93 RMTPLSRQALL---------LTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp TSCTTHHHHHT---------TTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHH---------HHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 56777777775 34444456779999999999999999998888877654
No 118
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=42.78 E-value=5.1 Score=33.43 Aligned_cols=45 Identities=2% Similarity=0.133 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchh
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNL 300 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~ 300 (314)
.++..|++.|... |......+++|..+|++..+|+.+++.-|.++
T Consensus 198 ~L~~~~r~vl~l~---------~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 198 ELDERERLIVYLR---------YYKDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp ------------------------------------------------------
T ss_pred hCCHHHHHHHHHH---------HhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 4566666666532 23334667999999999999999988666554
No 119
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=41.60 E-value=4 Score=29.40 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccc
Q 048741 248 FTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKH 298 (314)
Q Consensus 248 FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRa 298 (314)
+|.++++.+..+.+++-- ...-..-...+||..+||+..+|.-|..+++.
T Consensus 2 lt~~~~~~~~~l~~~l~~-~r~~~gltq~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 2 LTQEQLEDARRLKAIWEK-KKNELGLSYESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp CCHHHHHHHHHHHHHHHH-HHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 466666665554443100 00000012457899999999999888876653
No 120
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=41.00 E-value=10 Score=27.11 Aligned_cols=41 Identities=12% Similarity=0.098 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 246 TKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 246 T~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
..|+.+.+..+. +++||. .++||..+||+..+|.-|-.+++
T Consensus 9 ~~~~g~~lr~~R---~~~glt--------q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVR---KKLSLT--------QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHH---HHTTCC--------HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHH---HHcCCC--------HHHHHHHhCcCHHHHHHHHcCCC
Confidence 478888877765 444443 46899999999999999987754
No 121
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=40.61 E-value=6.3 Score=27.32 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCCCeeeeeccccc
Q 048741 275 VQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 275 reeLa~eiGv~~~vVKVWFQNRR 297 (314)
..+||..+|++..+|.-|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 34677788888777777776544
No 122
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=40.52 E-value=10 Score=25.69 Aligned_cols=35 Identities=9% Similarity=0.248 Sum_probs=24.2
Q ss_pred HHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 255 KMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 255 ~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
.|+.+-+..||. ..+||..+||+..+|.-|..+++
T Consensus 5 ~l~~~r~~~gls--------q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 5 RVKSKRIQLGLN--------QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTTCC--------HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCC--------HHHHHHHHCcCHHHHHHHHcCCC
Confidence 445555554443 45788899999888888887654
No 123
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=40.37 E-value=4.9 Score=29.98 Aligned_cols=52 Identities=8% Similarity=0.043 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
.++..|.+.+...|-. . .-......++|..+|+++.+|+.|...-+.|+++.
T Consensus 18 ~L~~~er~vl~l~~~l----~-~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 18 TLSPREAMVLRMRYGL----L-DGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp TSCHHHHHHHHHHHTT----T-TSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTT
T ss_pred hCCHHHHHHHHHHHcc----C-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4678888888765531 0 00112456899999999999999998766666653
No 124
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=40.07 E-value=19 Score=28.22 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=23.5
Q ss_pred HHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 256 MFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 256 Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
-.+.|.+-|+.. ....++|++.||++.+|--.|.|+.
T Consensus 21 A~~lf~~~G~~~-----~t~~~IA~~agvs~~t~Y~~F~sK~ 57 (199)
T 3on2_A 21 AESTLEKDGVDG-----LSLRQLAREAGVSHAAPSKHFRDRQ 57 (199)
T ss_dssp HHHHHHHHCGGG-----CCHHHHHHHTC-----CCCSSSSHH
T ss_pred HHHHHHhcChhh-----hhHHHHHHHhCCChHHHHHHhCCHH
Confidence 345566655554 3677899999999999999998864
No 125
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=39.79 E-value=3.9 Score=31.23 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=34.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhh
Q 048741 244 FRTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLA 301 (314)
Q Consensus 244 ~RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~K 301 (314)
....||..|++.|.-+++ |+ ...++|..+|++.++|+....+=+.|+.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~--G~--------s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK--GF--------TNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ---CCCHHHHHHHHHHHT--TC--------CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 344689999999987663 33 3568999999999999988776554443
No 126
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=39.62 E-value=37 Score=24.54 Aligned_cols=37 Identities=8% Similarity=0.159 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
++|.+|+++|-+..-. .|.+.+|++...|-|.|....
T Consensus 11 rls~eqk~~L~~~l~~--------------~l~~~lgip~~~v~V~i~e~~ 47 (76)
T 1gyx_A 11 ELDEQQKAALAADITD--------------VIIRHLNSKDSSISIALQQIQ 47 (76)
T ss_dssp CCCHHHHHHHHHHHHH--------------HHHHHHTCCGGGCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHH--------------HHHHHhCcCCceEEEEEEEeC
Confidence 3689999888644444 678889999999998887553
No 127
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=39.44 E-value=7.2 Score=27.18 Aligned_cols=36 Identities=8% Similarity=0.200 Sum_probs=24.4
Q ss_pred HHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 254 EKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 254 ~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
+.|+.+-++.||. ..+||..+||+..+|.-|..+++
T Consensus 13 ~~l~~~r~~~gls--------q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 13 RTLKKIRTQKGVS--------QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHHTTCC--------HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCC--------HHHHHHHHCCCHHHHHHHHCCCC
Confidence 3444555554543 35788899999888888887654
No 128
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=39.03 E-value=43 Score=22.68 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccc
Q 048741 248 FTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNN 296 (314)
Q Consensus 248 FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNR 296 (314)
.|.+|+++|.+..-+ .|++.+|+++..|-|-|...
T Consensus 12 ~s~eqk~~l~~~lt~--------------~l~~~lg~~~~~v~V~i~e~ 46 (64)
T 3abf_A 12 RPPEKKRELVRRLTE--------------MASRLLGEPYEEVRVILYEV 46 (64)
T ss_dssp CCHHHHHHHHHHHHH--------------HHHHHTTCCGGGEEEEEEEE
T ss_pred CCHHHHHHHHHHHHH--------------HHHHHhCCCcccEEEEEEEc
Confidence 378999888644443 67888999999998876654
No 129
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=38.93 E-value=5.3 Score=28.56 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhh
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLA 301 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~K 301 (314)
.++..|.+.+...|-. . .......+++|..+|+++.+|+.|...-+.+++
T Consensus 10 ~L~~~er~il~l~~~l----~-~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGL----I-DGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTT----T-TSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhc----c-cCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5788888888866631 0 001124568999999999999999987777776
No 130
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=38.87 E-value=43 Score=23.44 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccc
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNN 296 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNR 296 (314)
-.|.+||++|-+.+-. .++..+|+++..|-|-|+..
T Consensus 13 grs~eqK~~l~~~lt~--------------~l~~~lg~p~~~v~V~i~e~ 48 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSD--------------LMVKVLNKNKASIVVIIDEV 48 (67)
T ss_dssp BSCHHHHHHHHHHHHH--------------HHHHHHCCCGGGCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHH--------------HHHHHHCcCcccEEEEEEEe
Confidence 3589999998654444 67888999999888877654
No 131
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=37.92 E-value=4.7 Score=35.02 Aligned_cols=48 Identities=6% Similarity=0.131 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhh
Q 048741 245 RTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAK 302 (314)
Q Consensus 245 RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KK 302 (314)
...+|..|++.|.-+++- . ..+++|..+|+++++||.+.+|=+.|+.-
T Consensus 173 ~~~Lt~~e~~vl~~~~~g--~--------s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKG--K--------TASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHHTT--C--------CHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcC--C--------CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 456999999998765432 1 34689999999999999999877766653
No 132
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=37.76 E-value=8.1 Score=33.21 Aligned_cols=51 Identities=22% Similarity=0.410 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccCCCC-HHHHHHHHHHhCCCCCeeeeecccc
Q 048741 245 RTKFTQEQKEKMFNFAEKVGWKIQKQE-ESVVQQFCQEIGVKRRVLKVWMHNN 296 (314)
Q Consensus 245 RT~FT~eQk~~Le~~FerlGWr~~~pd-~~~reeLa~eiGv~~~vVKVWFQNR 296 (314)
|-+||.+++.....+..+ ++-.+... ...+.++|+++||++.++--|-...
T Consensus 21 ~r~yt~EfK~aAv~l~~~-~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~~ 72 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVEN-ELMESNNEEKRTQDEMANELGINRTTLWEWRTKN 72 (155)
T ss_dssp HTTSCHHHHHHHHHHHHH-HHCC---CCCCCHHHHHHHHTCCHHHHHHHHHHC
T ss_pred hhhcCHHHHHHHHHHHHc-cccccccccCCCHHHHHHHhCCCHHHHHHHHHcC
Confidence 445999999998766554 11101000 1357799999999999999997643
No 133
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=37.61 E-value=3.1 Score=33.84 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 248 FTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 248 FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
++..|.+.+.-.|-. |+.. +++|..+|+++.+|+.|.+.-|.++|+.
T Consensus 136 L~~~~r~vl~l~~~~-g~s~--------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 136 LPEAQRALIERAFFG-DLTH--------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp SCHHHHHHHHHHHHS-CCSS--------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc-CCCH--------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 566666666543322 2222 3789999999999999999877777764
No 134
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=37.48 E-value=8.1 Score=26.60 Aligned_cols=36 Identities=8% Similarity=0.142 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 254 EKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 254 ~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
+.|+.+-++.||. ..+||..+|++..+|.-|..+++
T Consensus 16 ~~l~~~r~~~g~s--------~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 16 QRLRELRTAKGLS--------QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHHTTCC--------HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCC--------HHHHHHHHCcCHHHHHHHHCCCC
Confidence 3455555555554 45789999999988888887653
No 135
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=37.37 E-value=8.2 Score=26.97 Aligned_cols=36 Identities=6% Similarity=0.258 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 254 EKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 254 ~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
+.|+.+-++.||. ..+||..+||+..+|.-|..+++
T Consensus 10 ~~l~~~r~~~g~s--------q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 10 EHLMELITQQNLT--------INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHHTTCC--------HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCC--------HHHHHHHHCcCHHHHHHHHcCCC
Confidence 4455555554444 34678888888888877776654
No 136
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=36.95 E-value=11 Score=26.84 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=15.3
Q ss_pred ccccccccccCCCCCCcccccccccc
Q 048741 99 ATDGCGEFMPSGEEGTIEALTCSACN 124 (314)
Q Consensus 99 a~DGCgEFm~~~~~gt~~~l~CaaCg 124 (314)
-=|=|++|| .. ..|+|..|+
T Consensus 24 ~C~~C~~~i--~k----qg~kC~~C~ 43 (59)
T 1rfh_A 24 WCDLCGREV--LR----QALRCANCK 43 (59)
T ss_dssp ECTTTCSEE--CS----CCEECTTTS
T ss_pred Echhcchhh--hh----CccEeCCCC
Confidence 357899999 34 469999884
No 137
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=36.26 E-value=7 Score=32.71 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=27.7
Q ss_pred HHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 257 FNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 257 e~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
.++|.+-||.. ....++|++.||++.+|--.|.|+.
T Consensus 54 ~~lf~e~G~~~-----~t~~~IA~~aGvs~~tlY~~F~sK~ 89 (236)
T 3q0w_A 54 ENLLEDRPLAD-----ISVDDLAKGAGISRPTFYFYFPSKE 89 (236)
T ss_dssp HHHHHHSCGGG-----CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHcCccc-----CCHHHHHHHhCCcHHHHHHHCCCHH
Confidence 35566645543 3678899999999999999998864
No 138
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=36.21 E-value=10 Score=31.67 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=26.6
Q ss_pred HHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 258 NFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 258 ~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
++|.+-||.. ....++|++.||++.+|-.+|.|+-
T Consensus 54 ~l~~~~G~~~-----~tv~~IA~~AGvs~~t~Y~~F~sKe 88 (229)
T 3bni_A 54 DLLDEVGYDA-----LSTRAVALRADVPIGSVYRFFGNKR 88 (229)
T ss_dssp HHHHHHCTTT-----CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHhcChhh-----ccHHHHHHHHCCCchhHHHHcCCHH
Confidence 4455644443 3677899999999999999998863
No 139
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=36.15 E-value=22 Score=27.47 Aligned_cols=44 Identities=7% Similarity=0.155 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhC--CCCCeeeeecccccc
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIG--VKRRVLKVWMHNNKH 298 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiG--v~~~vVKVWFQNRRa 298 (314)
+++.++++.+..+.+. .... ..+|+.++| ++..+|.-|++...-
T Consensus 60 ~l~~~~~~~i~~~~~~-----~~~s---~~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDERNVIRAASN-----SCKT---ARDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHHHHHHHHHH-----CCCC---HHHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHHHhC-----CCCC---HHHHHHHHCCCccHHHHHHHHHHCCC
Confidence 5899999888877443 3222 246778888 788899999976554
No 140
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=35.79 E-value=16 Score=27.09 Aligned_cols=29 Identities=31% Similarity=0.652 Sum_probs=19.9
Q ss_pred cccccccccccCCCCCCccccccccc--ccccchhhh
Q 048741 98 NATDGCGEFMPSGEEGTIEALTCSAC--NCHRNFHRK 132 (314)
Q Consensus 98 ~a~DGCgEFm~~~~~gt~~~l~CaaC--gCHRnFHr~ 132 (314)
..=|=|++|| .. ..|+|..| .||+-=+.+
T Consensus 36 t~C~~C~~~l--~~----qG~kC~~C~~~cHkkC~~~ 66 (72)
T 2fnf_X 36 GWCDLCGREV--LR----QALRCANCKFTCHSECRSL 66 (72)
T ss_dssp CBCTTTSSBC--SS----CCEECTTSSCEECTGGGGG
T ss_pred cchhhhhHHH--Hh----CcCccCCCCCeechhhhcc
Confidence 3468899999 44 35999998 466544433
No 141
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=35.41 E-value=13 Score=26.89 Aligned_cols=23 Identities=4% Similarity=0.176 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCCCeeeeeccccc
Q 048741 275 VQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 275 reeLa~eiGv~~~vVKVWFQNRR 297 (314)
.++||..+||+..+|.-|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45899999999999988887653
No 142
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=34.11 E-value=17 Score=28.86 Aligned_cols=39 Identities=3% Similarity=0.124 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 254 EKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 254 ~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
+...++|.+-||.. ....++|++.||++.+|-..|.|+.
T Consensus 23 ~aa~~l~~~~G~~~-----~t~~~Ia~~agvs~~t~Y~~F~sK~ 61 (211)
T 3him_A 23 AAAIEVFAAKGYGA-----TTTREIAASLDMSPGAVYPHYKTKE 61 (211)
T ss_dssp HHHHHHHHHHCSTT-----CCHHHHHHHTTCCTTSSTTTCSSHH
T ss_pred HHHHHHHHHcCCCc-----CCHHHHHHHhCCCcChhhhcCCCHH
Confidence 33345566645543 3678899999999999999998864
No 143
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=33.83 E-value=11 Score=31.24 Aligned_cols=40 Identities=5% Similarity=0.154 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 253 KEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 253 k~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
++.-.++|.+-||.. ...+++|++.||++.+|-..|.|+.
T Consensus 36 l~aA~~lf~~~G~~~-----~t~~~IA~~Agvs~~t~Y~~F~sKe 75 (230)
T 2iai_A 36 LSVAVQVFIERGYDG-----TSMEHLSKAAGISKSSIYHHVTGKE 75 (230)
T ss_dssp HHHHHHHHHHHCTTT-----CCHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred HHHHHHHHHHcCccc-----cCHHHHHHHHCCChhHHHHhCCCHH
Confidence 455556677745544 3678899999999999999998763
No 144
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=33.76 E-value=9.5 Score=27.03 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=13.3
Q ss_pred HHHHHHhCCCCCeeeeecccc
Q 048741 276 QQFCQEIGVKRRVLKVWMHNN 296 (314)
Q Consensus 276 eeLa~eiGv~~~vVKVWFQNR 296 (314)
++||.++||++.+|.-|..++
T Consensus 19 ~~lA~~~gis~~~i~~~e~g~ 39 (77)
T 2k9q_A 19 KSVAEEMGISRQQLCNIEQSE 39 (77)
T ss_dssp HHHHHHHTSCHHHHHHHHTCC
T ss_pred HHHHHHhCCCHHHHHHHHcCC
Confidence 456666676666666666554
No 145
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=33.74 E-value=35 Score=24.56 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcC
Q 048741 240 VKKRFRTKFTQEQKEKMFNFAEKVG 264 (314)
Q Consensus 240 ~kKR~RT~FT~eQk~~Le~~FerlG 264 (314)
.+++.|..||.+.-+.|..+.++.|
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G 29 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYG 29 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 4567788999999999999999866
No 146
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=33.62 E-value=10 Score=26.84 Aligned_cols=36 Identities=3% Similarity=0.088 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 254 EKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 254 ~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
+.|+.+.++.||. ..+||..+||+..+|.-|..+++
T Consensus 13 ~~l~~~r~~~gls--------q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 13 QLLTKLRKEASLS--------QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHHTTCC--------HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHHcCCC--------HHHHHHHhCCCHHHHHHHHcCCC
Confidence 3455555565554 35899999999999988887654
No 147
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=33.59 E-value=10 Score=28.88 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=8.8
Q ss_pred HHHHHhCCCCCeeeeeccc
Q 048741 277 QFCQEIGVKRRVLKVWMHN 295 (314)
Q Consensus 277 eLa~eiGv~~~vVKVWFQN 295 (314)
+||..+||++.+|.-|..+
T Consensus 42 eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 42 ELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp HHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHCcCHHHHHHHHcC
Confidence 4444444444444444443
No 148
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=33.43 E-value=20 Score=30.15 Aligned_cols=52 Identities=15% Similarity=0.265 Sum_probs=33.8
Q ss_pred CCCCCCCCCHHHHH-HHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 241 KKRFRTKFTQEQKE-KMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 241 kKR~RT~FT~eQk~-~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
+++.|...|.+++- .-.++|.+-|+.. ....++|+++||++.+|--+|.|+.
T Consensus 18 ~~~~r~~~tr~~Il~aA~~l~~~~G~~~-----~s~~~IA~~aGvs~~tlY~~F~~K~ 70 (211)
T 3fiw_A 18 YFQGMTKMNRETVITEALDLLDEVGLDG-----VSTRRLAKRLGVEQPSLYWYFRTKR 70 (211)
T ss_dssp ------CCCHHHHHHHHHHHHHHHCGGG-----CCHHHHHHHHTSCTHHHHTTCSSHH
T ss_pred CcccccccCHHHHHHHHHHHHHhcCccc-----CCHHHHHHHhCCChhHHHHHcCCHH
Confidence 34455566766653 3346677755543 3677899999999999999998764
No 149
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=32.98 E-value=9 Score=27.85 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=15.7
Q ss_pred HHHHHHhCCCCCeeeeeccccc
Q 048741 276 QQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 276 eeLa~eiGv~~~vVKVWFQNRR 297 (314)
.+||+.+||+..+|.-|..+++
T Consensus 35 ~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 35 FKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4677777777777777776654
No 150
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=32.85 E-value=7.6 Score=28.81 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHhCCCC
Q 048741 270 QEESVVQQFCQEIGVKR 286 (314)
Q Consensus 270 pd~~~reeLa~eiGv~~ 286 (314)
++......||..+||+.
T Consensus 49 p~~~~l~~ia~~l~v~~ 65 (94)
T 2kpj_A 49 PRMGKVQALADYFNINK 65 (94)
T ss_dssp CCHHHHHHHHHHHTCCT
T ss_pred CCHHHHHHHHHHHCcCH
Confidence 45555566666666554
No 151
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=32.62 E-value=62 Score=22.98 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccc
Q 048741 248 FTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHN 295 (314)
Q Consensus 248 FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQN 295 (314)
.|.+||++|.+.+-. .++..+|+++..|-|-|..
T Consensus 12 rs~eqK~~L~~~it~--------------~l~~~lg~p~~~v~V~i~e 45 (72)
T 3mb2_A 12 RSTEQKAELARALSA--------------AAAAAFDVPLAEVRLIIQE 45 (72)
T ss_dssp CCHHHHHHHHHHHHH--------------HHHHHHTCCGGGEEEEEEE
T ss_pred CCHHHHHHHHHHHHH--------------HHHHHhCCCcccEEEEEEE
Confidence 479999998755444 6788899999988876654
No 152
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=32.42 E-value=9.3 Score=25.59 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=14.3
Q ss_pred HHHHHHhCCCCCeeeeecccc
Q 048741 276 QQFCQEIGVKRRVLKVWMHNN 296 (314)
Q Consensus 276 eeLa~eiGv~~~vVKVWFQNR 296 (314)
.+||..+|++..+|.-|..++
T Consensus 18 ~~lA~~~gis~~~i~~~e~g~ 38 (66)
T 2xi8_A 18 SELAALLEVSRQTINGIEKNK 38 (66)
T ss_dssp HHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 467777777777777776654
No 153
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=32.39 E-value=10 Score=31.00 Aligned_cols=36 Identities=8% Similarity=0.112 Sum_probs=27.3
Q ss_pred HHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 257 FNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 257 e~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
.++|.+-|+. ....+++|++.||++.+|-.+|.|+.
T Consensus 38 ~~lf~~~G~~-----~~tv~~IA~~agvs~~t~Y~~F~sK~ 73 (215)
T 2qko_A 38 IEVLAREGAR-----GLTFRAVDVEANVPKGTASNYFPSRD 73 (215)
T ss_dssp HHHHHHTCTT-----TCCHHHHHHHSSSTTTCHHHHCSCHH
T ss_pred HHHHHHhChh-----hccHHHHHHHcCCCcchHHHhCCCHH
Confidence 3556663433 34678899999999999999998863
No 154
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=32.31 E-value=3.1 Score=34.06 Aligned_cols=30 Identities=3% Similarity=0.141 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 274 VVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 274 ~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
..+++|..+|++..+|+.+.+.-|.++|+.
T Consensus 158 s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 158 SYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999888777764
No 155
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=31.80 E-value=13 Score=29.24 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
.++.+++..|. +++||. .++||..+|++..+|.-|-.+++
T Consensus 70 ~~~~~~l~~~R---~~~gls--------q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 70 TVAPEFIVKVR---KKLSLT--------QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp TCCHHHHHHHH---HHTTCC--------HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred CCCHHHHHHHH---HHcCCC--------HHHHHHHHCCCHHHHHHHHCCCC
Confidence 45666655554 454443 35899999999999999988755
No 156
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=31.71 E-value=6.1 Score=34.24 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhh
Q 048741 245 RTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLA 301 (314)
Q Consensus 245 RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~K 301 (314)
...+|..|++.|.-+++- ....++|..+|+++.+||...+|=+.|+.
T Consensus 171 ~~~Lt~~e~~vl~~~~~g----------~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAVG----------KTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHTTT----------CCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 457999999998754332 24568999999999999999887766654
No 157
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=31.67 E-value=9.9 Score=26.37 Aligned_cols=19 Identities=16% Similarity=0.513 Sum_probs=9.4
Q ss_pred HHHHHhCCCCCeeeeeccc
Q 048741 277 QFCQEIGVKRRVLKVWMHN 295 (314)
Q Consensus 277 eLa~eiGv~~~vVKVWFQN 295 (314)
+||..+||+..+|.-|..+
T Consensus 28 ~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 28 WLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp HHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHCcCHHHHHHHHcC
Confidence 4555555555555444443
No 158
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=31.27 E-value=63 Score=21.62 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccc
Q 048741 249 TQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNN 296 (314)
Q Consensus 249 T~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNR 296 (314)
|.+|+++|-+..-. .|...+|++...|-|-|...
T Consensus 12 s~e~k~~l~~~i~~--------------~l~~~lg~p~~~v~v~i~e~ 45 (62)
T 1otf_A 12 TDEQKETLIRQVSE--------------AMANSLDAPLERVRVLITEM 45 (62)
T ss_dssp CHHHHHHHHHHHHH--------------HHHHHHTCCGGGCEEEEEEE
T ss_pred CHHHHHHHHHHHHH--------------HHHHHhCcCcccEEEEEEEe
Confidence 78999888644333 67788999999988877654
No 159
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=31.03 E-value=10 Score=30.49 Aligned_cols=38 Identities=8% Similarity=0.290 Sum_probs=28.2
Q ss_pred HHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 255 KMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 255 ~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
...++|.+-||. .....++|++.||++.+|--+|.|+.
T Consensus 39 aa~~l~~~~G~~-----~~tv~~Ia~~agvs~~t~Y~~F~sK~ 76 (218)
T 3dcf_A 39 VATELFREKGYY-----ATSLDDIADRIGFTKPAIYYYFKSKE 76 (218)
T ss_dssp HHHHHHHHTCTT-----TCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHcCcc-----cCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 334556663443 34678899999999999999998864
No 160
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=31.02 E-value=9.4 Score=32.68 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
.+|..|++.+..+.++|-- ......-...+||+.+|++..+|.-|..+++
T Consensus 6 ~lt~~~~~~~~~~~~~l~~-~r~~~g~t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 6 PLTQEQLEDARRLKAIYEK-KKNELGLSQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CCCSHHHHHHHHHHHHHHH-HTTTTTCCSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred cCCHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCC
Confidence 4667777544333332100 0111111346899999999999999997754
No 161
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=30.82 E-value=20 Score=28.37 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=26.4
Q ss_pred HHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccc
Q 048741 258 NFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNN 296 (314)
Q Consensus 258 ~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNR 296 (314)
+.|.+-||.. ...+++|++.||++.+|-..|.|+
T Consensus 28 ~lf~~~G~~~-----~ti~~Ia~~agvs~~t~Y~~F~sK 61 (208)
T 3cwr_A 28 RLLSSGGAAA-----MTMEGVASEAGIAKKTLYRFASGR 61 (208)
T ss_dssp HHHHHHCGGG-----CCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHcCHHh-----ccHHHHHHHhCCCHHHHHHHcCCH
Confidence 4466645544 367789999999999999999886
No 162
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=30.61 E-value=14 Score=30.11 Aligned_cols=46 Identities=15% Similarity=0.277 Sum_probs=32.0
Q ss_pred CCCHHHH-HHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 247 KFTQEQK-EKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 247 ~FT~eQk-~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
..|.+++ +.-.+.|.+-||.. ...+++|++.||++.+|-.+|.|+.
T Consensus 8 ~~tr~~Il~AA~~lf~~~G~~~-----~s~~~IA~~AGvs~gtlY~~F~sKe 54 (203)
T 2np5_A 8 STSPERLAAALFDVAAESGLEG-----ASVREVAKRAGVSIGAVQHHFSTKD 54 (203)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGG-----CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred chhHHHHHHHHHHHHHHhChhh-----ccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3444443 33345677756554 3678899999999999999998863
No 163
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=29.83 E-value=12 Score=26.62 Aligned_cols=22 Identities=5% Similarity=0.203 Sum_probs=16.3
Q ss_pred HHHHHHhCCCCCeeeeeccccc
Q 048741 276 QQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 276 eeLa~eiGv~~~vVKVWFQNRR 297 (314)
++||..+||+..+|.-|..+++
T Consensus 31 ~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 31 KELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHCcCHHHHHHHHCCCC
Confidence 4778888888888877776653
No 164
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=29.83 E-value=33 Score=27.71 Aligned_cols=42 Identities=10% Similarity=0.219 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHcCc-c--cCCCCHHHHHHHHHHhCCCCC
Q 048741 246 TKFTQEQKEKMFNFAEKVGW-K--IQKQEESVVQQFCQEIGVKRR 287 (314)
Q Consensus 246 T~FT~eQk~~Le~~FerlGW-r--~~~pd~~~reeLa~eiGv~~~ 287 (314)
+.+|.+|++.|++.|...-. + .-+.+..+...+.+.+|+...
T Consensus 1 sqLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t 45 (159)
T 3i5g_C 1 SQLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPT 45 (159)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCC
T ss_pred CCCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCC
Confidence 36899999999998876432 1 235666777777888887543
No 165
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=29.76 E-value=11 Score=27.65 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHHhCCCC
Q 048741 270 QEESVVQQFCQEIGVKR 286 (314)
Q Consensus 270 pd~~~reeLa~eiGv~~ 286 (314)
++......||..+|++.
T Consensus 48 ~~~~~~~~i~~~l~v~~ 64 (94)
T 2ict_A 48 LTPEMAIKLSVVIGSSP 64 (94)
T ss_dssp CCHHHHHHHHHHTCSCH
T ss_pred CCHHHHHHHHHHHCcCH
Confidence 44555555566555543
No 166
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=29.75 E-value=13 Score=29.77 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 272 ESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 272 ~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
.....++|++.||++.+|-.+|.|+.
T Consensus 45 ~~t~~~Ia~~agvs~~t~Y~~F~sK~ 70 (212)
T 3nxc_A 45 RITTAKLAASVGVSEAALYRHFPSKT 70 (212)
T ss_dssp -CCHHHHHHHTTSCHHHHHTTCSSHH
T ss_pred hcCHHHHHHHhCCChhHHHHHCCCHH
Confidence 34778899999999999999998864
No 167
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=29.23 E-value=8.8 Score=31.34 Aligned_cols=27 Identities=15% Similarity=0.356 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 271 EESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 271 d~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
......++|++.||++.+|-.+|.|+.
T Consensus 38 ~~~s~~~IA~~aGvs~~tlY~~F~sK~ 64 (215)
T 2hku_A 38 EGVPITQICAAAGAHPNQVTYYYGSKE 64 (215)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred CCcCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 556788999999999999999998864
No 168
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=29.08 E-value=13 Score=24.49 Aligned_cols=14 Identities=36% Similarity=0.783 Sum_probs=10.8
Q ss_pred cccccccccccccc
Q 048741 115 IEALTCSACNCHRN 128 (314)
Q Consensus 115 ~~~l~CaaCgCHRn 128 (314)
.-.|+|.|||-.|.
T Consensus 19 ~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 19 VHLLKCMACGAIRP 32 (36)
T ss_dssp EEEEEEETTTEEEE
T ss_pred cEEEEhhcCCCccc
Confidence 34789999997664
No 169
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=29.05 E-value=9 Score=32.00 Aligned_cols=48 Identities=8% Similarity=0.016 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
.++..|.+.|...|-. ....+++|..+|+++.+|+.+.+.-|.++|+.
T Consensus 187 ~L~~~~r~vl~l~~~~---------g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE---------ELPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTS---------CCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc---------CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4667777776654432 12456899999999999999998777777653
No 170
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=28.41 E-value=68 Score=24.60 Aligned_cols=35 Identities=3% Similarity=0.021 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 249 TQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 249 T~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
|.+|+++|-+.+-. .|.+.+|++...|-|.|....
T Consensus 69 ~~eqk~~l~~~i~~--------------~l~~~lgi~~~~v~I~~~e~~ 103 (115)
T 1uiz_A 69 GGPQNKSYTKLLCD--------------ILTKQLNIPANRVYINYYDLN 103 (115)
T ss_dssp SHHHHHHHHHHHHH--------------HHHHHHCCCGGGEEEEEEECC
T ss_pred CHHHHHHHHHHHHH--------------HHHHHhCcCcceEEEEEEECC
Confidence 68999887644443 688899999999999998654
No 171
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=28.33 E-value=46 Score=27.22 Aligned_cols=43 Identities=12% Similarity=0.089 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCcc-cCCCCHHHHHHHHHHhCCCCC
Q 048741 245 RTKFTQEQKEKMFNFAEKVGWK-IQKQEESVVQQFCQEIGVKRR 287 (314)
Q Consensus 245 RT~FT~eQk~~Le~~FerlGWr-~~~pd~~~reeLa~eiGv~~~ 287 (314)
++.||.+|+++|++.|..+.-- .-+.+..+...+.+.+|+...
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 5679999999999999875432 235677788888888887654
No 172
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=28.19 E-value=13 Score=28.68 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=8.7
Q ss_pred HhCCCCCeeeeecccccchhhhc
Q 048741 281 EIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 281 eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
+++++..++..||++.|..-+..
T Consensus 2 ~~~~~~~~~~~W~~~~r~~~~~~ 24 (97)
T 1b72_A 2 EPNTPTARTFDWMKVKRNPPKTA 24 (97)
T ss_dssp ------CCCCGGGGC--------
T ss_pred CCCCCCcccccccccccCCCCCC
Confidence 57888999999999999865543
No 173
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=28.09 E-value=10 Score=32.12 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=26.9
Q ss_pred HHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 257 FNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 257 e~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
.++|.+.||.. ....++|++.||++.+|--+|.|+.
T Consensus 53 ~~lf~~~G~~~-----~t~~~IA~~aGvs~~tlY~~F~sK~ 88 (255)
T 3g1o_A 53 ENLLEDRPLAD-----ISVDDLAKGAGISRPTFYFYFPSKE 88 (255)
T ss_dssp HHHHTTSCGGG-----CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHcCCcc-----CcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 34455544433 3678899999999999999998864
No 174
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=27.90 E-value=10 Score=31.96 Aligned_cols=46 Identities=7% Similarity=0.333 Sum_probs=31.2
Q ss_pred CCCHHHH-HHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 247 KFTQEQK-EKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 247 ~FT~eQk-~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
.-+.+++ +.-.++|.+-||.. ....++|++.||++.+|--.|.|+.
T Consensus 17 ~~~r~~Il~AA~~lf~~~G~~~-----~t~~~IA~~aGvs~~tlY~~F~sKe 63 (251)
T 3npi_A 17 EVSTDTVLDIALSLFSELGFSD-----AKLEAIAKKSGMSKRMIHYHFGDKR 63 (251)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHHCCCHHHHHHHHCSHH
T ss_pred hHHHHHHHHHHHHHHHHcCccc-----cCHHHHHHHHCCCHHHHHHHcCCHH
Confidence 3444433 33335566645433 3677899999999999999998864
No 175
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=27.89 E-value=79 Score=21.10 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccc
Q 048741 249 TQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNN 296 (314)
Q Consensus 249 T~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNR 296 (314)
|.+|+++|-+..-. .|...+|++...|-|-|...
T Consensus 12 s~eqk~~l~~~i~~--------------~l~~~lg~~~~~v~V~i~e~ 45 (61)
T 2opa_A 12 TDEQKRNLVEKVTE--------------AVKETTGASEEKIVVFIEEM 45 (61)
T ss_dssp CHHHHHHHHHHHHH--------------HHHHHHCCCGGGCEEEEEEE
T ss_pred CHHHHHHHHHHHHH--------------HHHHHhCcCcCeEEEEEEEc
Confidence 78999888644333 67888999999988887754
No 176
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=27.69 E-value=72 Score=24.31 Aligned_cols=35 Identities=6% Similarity=0.102 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 249 TQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 249 T~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
|.+|+++|-+.+-+ .|.+.+|++...|-|.|....
T Consensus 68 ~~eqk~~l~~~i~~--------------~l~~~lgi~~~~v~I~~~e~~ 102 (113)
T 1hfo_A 68 EPSRNRDHSAKLFD--------------HLNTKLGIPKNRMYIHFVNLN 102 (113)
T ss_dssp SHHHHHHHHHHHHH--------------HHHHHHCCCGGGEEEEEEECC
T ss_pred CHHHHHHHHHHHHH--------------HHHHHhCcCcCeEEEEEEECC
Confidence 68999887644443 688999999999999998654
No 177
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=27.65 E-value=15 Score=26.15 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=15.2
Q ss_pred HHHHHHhCCCCCeeeeecccc
Q 048741 276 QQFCQEIGVKRRVLKVWMHNN 296 (314)
Q Consensus 276 eeLa~eiGv~~~vVKVWFQNR 296 (314)
++||..+||+..+|.-|..++
T Consensus 28 ~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 28 EDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp HHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHhCcCHHHHHHHHCCC
Confidence 467777788777777777654
No 178
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=27.11 E-value=29 Score=29.75 Aligned_cols=52 Identities=8% Similarity=0.137 Sum_probs=32.8
Q ss_pred CCCCCCCCCHHHHH-HHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 241 KKRFRTKFTQEQKE-KMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 241 kKR~RT~FT~eQk~-~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
+++.|...|.+++- .-.+.|.+-|+.. ....+||+++||++.+|-..|.|+.
T Consensus 9 ~r~~~~~~~r~~Il~aA~~l~~~~G~~~-----~s~~~IA~~aGvs~~tlY~hF~~K~ 61 (237)
T 2hxo_A 9 PERRQEPLSRERIVGAAVELLDTVGERG-----LTFRALAERLATGPGAIYWHITGKA 61 (237)
T ss_dssp -------CCHHHHHHHHHHHHHHTTTTT-----CCHHHHHHHHTSCGGGGGGTCCCHH
T ss_pred CCCCCCccCHHHHHHHHHHHHHhcCccc-----CCHHHHHHHHCCChHHHHHhcCCHH
Confidence 34445566776653 3346677744433 3677899999999999999998864
No 179
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=27.05 E-value=14 Score=26.88 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCc-ccCCCCHHHHHHHHHHhCCCCCeeeeecc
Q 048741 245 RTKFTQEQKEKMFNFAEKVGW-KIQKQEESVVQQFCQEIGVKRRVLKVWMH 294 (314)
Q Consensus 245 RT~FT~eQk~~Le~~FerlGW-r~~~pd~~~reeLa~eiGv~~~vVKVWFQ 294 (314)
-..++.++++.|+..|..+.- +.-+.+..+...+...+|++...++.+|.
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 346899999999999987542 23456778888888888987777776664
No 180
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=26.62 E-value=28 Score=30.12 Aligned_cols=51 Identities=12% Similarity=0.198 Sum_probs=34.6
Q ss_pred CCCCCCCCHHHHH-HHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 242 KRFRTKFTQEQKE-KMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 242 KR~RT~FT~eQk~-~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
|+.|...|.+++- .-.++|.+-|+.. ....+||+++||++.+|-..|.|+.
T Consensus 13 r~~r~~~tr~~Il~AA~~l~~e~G~~~-----~S~~~IA~~aGvs~~tlY~hF~sK~ 64 (243)
T 2g7l_A 13 RPAKPALSRRWIVDTAVALMRAEGLEK-----VTMRRLAQELDTGPASLYVYVANTA 64 (243)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHCSSS-----CCHHHHHHHTTSCHHHHTTTCCSHH
T ss_pred CCCCcccCHHHHHHHHHHHHHhcCchh-----cCHHHHHHHHCCChhHHHHHcCCHH
Confidence 3345567777653 3346677745443 3677899999999999999998864
No 181
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=26.55 E-value=82 Score=22.85 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccc
Q 048741 249 TQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNN 296 (314)
Q Consensus 249 T~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNR 296 (314)
|.||+++|-+..-. .++..+|+++..|-|.|...
T Consensus 13 s~eqK~~L~~~it~--------------~l~~~lg~p~~~v~V~i~E~ 46 (76)
T 3ej9_A 13 TDEQKRALSAGLLR--------------VISEATGEPRENIFFVIREG 46 (76)
T ss_dssp CHHHHHHHHHHHHH--------------HHHHHHCCCGGGCEEEEEEE
T ss_pred CHHHHHHHHHHHHH--------------HHHHHHCcCcccEEEEEEEe
Confidence 79999988644443 67888999999888766543
No 182
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=26.34 E-value=17 Score=26.67 Aligned_cols=12 Identities=17% Similarity=0.182 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHH
Q 048741 270 QEESVVQQFCQE 281 (314)
Q Consensus 270 pd~~~reeLa~e 281 (314)
++......||..
T Consensus 44 p~~~~l~~ia~~ 55 (99)
T 2l49_A 44 PPTDVMMNILQT 55 (99)
T ss_dssp CCHHHHHHHHSS
T ss_pred CCHHHHHHHHHH
Confidence 444444455555
No 183
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=26.27 E-value=79 Score=24.50 Aligned_cols=35 Identities=0% Similarity=-0.012 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 249 TQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 249 T~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
|.+|+++|-+.+-+ .|.+.+|++...|-|.|....
T Consensus 69 ~~eqk~~l~~~i~~--------------~l~~~lgi~~~~v~I~~~e~~ 103 (119)
T 2os5_A 69 SADDNIRHTQKITQ--------------FCQDTLKLPKDKVIITYFDLQ 103 (119)
T ss_dssp CHHHHHHHHHHHHH--------------HHHHHHCCCGGGEEEEEEECC
T ss_pred CHHHHHHHHHHHHH--------------HHHHHhCcCcccEEEEEEECC
Confidence 68999888644443 688899999999999998654
No 184
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=26.24 E-value=8.9 Score=32.27 Aligned_cols=47 Identities=11% Similarity=0.151 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhh
Q 048741 246 TKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAK 302 (314)
Q Consensus 246 T~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KK 302 (314)
..+|..+.+.|.-+++- ..++++|.+++++.++|++...|=|.|+.-
T Consensus 148 ~~LT~rE~~vL~~l~~g----------~s~~eIa~~l~is~~TV~~hi~~l~~KL~~ 194 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG----------LTNKQIADRMFLAEKTVKNYVSRLLAKLGM 194 (225)
T ss_dssp TTSCHHHHHHHHHHHTT----------CCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHCC----------CCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 46899998887765543 145789999999999999988876666543
No 185
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=26.24 E-value=33 Score=27.67 Aligned_cols=50 Identities=8% Similarity=0.004 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccCCCCHHHHH-HHHHH------hCCCCCeeeeecccccc
Q 048741 245 RTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQ-QFCQE------IGVKRRVLKVWMHNNKH 298 (314)
Q Consensus 245 RT~FT~eQk~~Le~~FerlGWr~~~pd~~~re-eLa~e------iGv~~~vVKVWFQNRRa 298 (314)
+.+++.++++.+.++.+. +......+.. +|..+ +.++..+|.-|++..+.
T Consensus 81 ~~~~~~~~~~~I~~~~~~----~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~ 137 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ----NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ 137 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH----CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHH----CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence 456788888888888776 4444443332 33222 24788888888875443
No 186
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=26.20 E-value=12 Score=31.31 Aligned_cols=36 Identities=6% Similarity=0.182 Sum_probs=27.4
Q ss_pred HHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 257 FNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 257 e~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
.++|.+-|+.. ...+++|++.||++.+|-.+|.|+-
T Consensus 23 ~~l~~~~G~~~-----~tv~~IA~~agvs~~t~Y~~F~sK~ 58 (231)
T 2qib_A 23 LDLFSRRSPDE-----VSIDEIASAAGISRPLVYHYFPGKL 58 (231)
T ss_dssp HHHHHHSCGGG-----CCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHcCchh-----cCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 35566644433 3678899999999999999998863
No 187
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=26.09 E-value=15 Score=26.39 Aligned_cols=18 Identities=6% Similarity=0.111 Sum_probs=10.8
Q ss_pred CCCHHHHHHHHHHhCCCC
Q 048741 269 KQEESVVQQFCQEIGVKR 286 (314)
Q Consensus 269 ~pd~~~reeLa~eiGv~~ 286 (314)
.++......||..+||+.
T Consensus 50 ~p~~~~l~~ia~~l~v~~ 67 (78)
T 3qq6_A 50 NPSIQFLEKVSAVLDVSV 67 (78)
T ss_dssp CCBHHHHHHHHHHHTCCH
T ss_pred CCCHHHHHHHHHHHCcCH
Confidence 455566666666666553
No 188
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=25.92 E-value=17 Score=27.89 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=8.7
Q ss_pred HHHHHhCCCCCeeeeeccc
Q 048741 277 QFCQEIGVKRRVLKVWMHN 295 (314)
Q Consensus 277 eLa~eiGv~~~vVKVWFQN 295 (314)
+||..+||+..+|.-|-.+
T Consensus 39 elA~~~gis~~~is~~E~G 57 (114)
T 3vk0_A 39 ELARQCGLDRTYVSAVERK 57 (114)
T ss_dssp HHHHHHTCCHHHHHHHTTT
T ss_pred HHHHHHCcCHHHHHHHHcC
Confidence 4444444444444444433
No 189
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=25.75 E-value=17 Score=30.62 Aligned_cols=15 Identities=33% Similarity=0.771 Sum_probs=12.0
Q ss_pred cccccccccccccch
Q 048741 115 IEALTCSACNCHRNF 129 (314)
Q Consensus 115 ~~~l~CaaCgCHRnF 129 (314)
.-.|+|.|||..|..
T Consensus 121 ~~~l~C~ACGa~~~V 135 (138)
T 1nee_A 121 ISLLKCEACGAKAPL 135 (138)
T ss_dssp TTEEECSTTSCCCCS
T ss_pred eEEEEccCCCCCccc
Confidence 457999999988753
No 190
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=25.74 E-value=93 Score=21.45 Aligned_cols=33 Identities=6% Similarity=0.115 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccc
Q 048741 249 TQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHN 295 (314)
Q Consensus 249 T~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQN 295 (314)
|.+||++|-+..-+ .+...+|+++..|-|-|..
T Consensus 12 s~eqk~~L~~~it~--------------~~~~~lg~p~~~v~V~i~e 44 (65)
T 3ry0_A 12 SPQEVAALGEALTA--------------AAHETLGTPVEAVRVIVEE 44 (65)
T ss_dssp CHHHHHHHHHHHHH--------------HHHHHHCCCGGGCEEEEEE
T ss_pred CHHHHHHHHHHHHH--------------HHHHHhCcCcccEEEEEEE
Confidence 79999998654444 6788899998887765543
No 191
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=25.32 E-value=22 Score=27.96 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 253 KEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 253 k~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
++...+.|.+-|+.. ...+++|++.||++.+|-..|.|+.
T Consensus 17 l~aa~~lf~~~G~~~-----~tv~~Ia~~agvs~~t~Y~~F~sK~ 56 (196)
T 3he0_A 17 LAAAEQLIAESGFQG-----LSMQKLANEAGVAAGTIYRYFSDKE 56 (196)
T ss_dssp HHHHHHHHHHHCTTT-----CCHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHhCccc-----CCHHHHHHHhCCCcchHHHhcCCHH
Confidence 444456677745443 3678899999999999999998863
No 192
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=25.24 E-value=15 Score=32.83 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccchhhh
Q 048741 245 RTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAK 302 (314)
Q Consensus 245 RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRaK~KK 302 (314)
...+|..|++.|.-.++ |. ...++|..+|+++++|+..+.|=+.|+.-
T Consensus 195 ~~~Lt~re~~vl~~~~~--G~--------s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 195 NMPLSQREYDIFHWMSR--GK--------TNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCCCHHHHHHHHHHHT--TC--------CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 35799999999986653 22 34689999999999999998877766653
No 193
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.96 E-value=6.7 Score=26.65 Aligned_cols=28 Identities=7% Similarity=0.152 Sum_probs=23.0
Q ss_pred HHHHHHhCCCCCeeeeecccccchhhhc
Q 048741 276 QQFCQEIGVKRRVLKVWMHNNKHNLAKK 303 (314)
Q Consensus 276 eeLa~eiGv~~~vVKVWFQNRRaK~KKk 303 (314)
.++|..+|+++.+|+.++++-+.|++.+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 4899999999999999988766666543
No 194
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=24.78 E-value=0.53 Score=40.18 Aligned_cols=45 Identities=11% Similarity=0.336 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccc
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNN 296 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNR 296 (314)
.+|.|.+++|++ |-|-+++|-+..+.+++-+| |.+..|+.|+|--
T Consensus 18 tl~eeeL~rLl~----lSheik~P~IpLksel~vEi-LEkG~VRfWlQae 62 (142)
T 2jtd_A 18 SHMEEEMKRLLA----LSQEHKFPTVPTKSELAVEI-LEKGQVRFWMQAE 62 (142)
T ss_dssp ---CCCSHHHHH----CCCCCCCSSCSSSCEEEEEE-ETTTEEEEEEECS
T ss_pred eeCHHHHHHHHH----hhhhccCCcccchhhhhHHH-HhcCcEEEEEEhh
Confidence 455666677764 55669999998888888888 6788999999843
No 195
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=24.68 E-value=50 Score=26.27 Aligned_cols=36 Identities=6% Similarity=0.058 Sum_probs=27.6
Q ss_pred HHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 257 FNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 257 e~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
.+.|.+-||.. ....++|++.||++.+|-..|.|+-
T Consensus 29 ~~lf~~~G~~~-----~t~~~IA~~agvs~~tlY~~F~sK~ 64 (216)
T 3qqa_A 29 LELFLTKGYQE-----TSLSDIIKLSGGSYSNIYDGFKSKE 64 (216)
T ss_dssp HHHHHHTCTTT-----CCHHHHHHHHTTSCCSSSCSCCSHH
T ss_pred HHHHHHcChhh-----CCHHHHHHHhCCCHHHHHHhcCCHH
Confidence 35566644443 4678899999999999999998863
No 196
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=24.17 E-value=17 Score=25.98 Aligned_cols=21 Identities=19% Similarity=0.498 Sum_probs=14.5
Q ss_pred HHHHHHhCCCCCeeeeecccc
Q 048741 276 QQFCQEIGVKRRVLKVWMHNN 296 (314)
Q Consensus 276 eeLa~eiGv~~~vVKVWFQNR 296 (314)
.+||..+||++.+|.-|..++
T Consensus 29 ~~lA~~~gis~~~i~~~e~g~ 49 (88)
T 2wiu_B 29 SELAKKIGIKQATISNFENNP 49 (88)
T ss_dssp HHHHHHHTCCHHHHHHHHHCG
T ss_pred HHHHHHhCCCHHHHHHHHcCC
Confidence 467777777777777776653
No 197
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=23.68 E-value=15 Score=25.53 Aligned_cols=17 Identities=6% Similarity=0.116 Sum_probs=8.2
Q ss_pred CCHHHHHHHHHHhCCCC
Q 048741 270 QEESVVQQFCQEIGVKR 286 (314)
Q Consensus 270 pd~~~reeLa~eiGv~~ 286 (314)
++......||..+||+.
T Consensus 48 ~~~~~l~~ia~~l~v~~ 64 (73)
T 3omt_A 48 PSLETLFDIAEALNVDV 64 (73)
T ss_dssp CCHHHHHHHHHHHTSCG
T ss_pred CCHHHHHHHHHHHCcCH
Confidence 44444455555555443
No 198
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.38 E-value=37 Score=24.76 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=14.0
Q ss_pred cccccccCCCCCCccccccccccc
Q 048741 102 GCGEFMPSGEEGTIEALTCSACNC 125 (314)
Q Consensus 102 GCgEFm~~~~~gt~~~l~CaaCgC 125 (314)
.|.-+|-.. ..++++|.||+-
T Consensus 33 eC~~C~V~N---~a~~~kC~ACet 53 (57)
T 2ebv_A 33 ECSVCCVSN---NAEDNKCVSCMS 53 (57)
T ss_dssp CCSSSCCCC---CSSCSBCSSSCC
T ss_pred eCCeeEccC---ccCCceeeEcCC
Confidence 355556543 347899999973
No 199
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=23.32 E-value=74 Score=26.53 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccc
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHN 295 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQN 295 (314)
.||.+||+.|-+..-+ .++..+|+++.-|.|.|.-
T Consensus 11 ~~t~eqK~aLa~~It~--------------a~~e~~~vP~~~v~Vif~e 45 (149)
T 3mf7_A 11 RLTPSAKHAVAKAITD--------------AHRGLTGTQHFLAQVNFQE 45 (149)
T ss_dssp TSCHHHHHHHHHHHHH--------------HHHHTCCTTCCCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHH--------------HHHHHHCcChHHEEEEEEE
Confidence 5789999988644443 5677789999999998875
No 200
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.24 E-value=23 Score=24.88 Aligned_cols=19 Identities=32% Similarity=0.772 Sum_probs=12.6
Q ss_pred ccccccCCCCCCcccccccccc
Q 048741 103 CGEFMPSGEEGTIEALTCSACN 124 (314)
Q Consensus 103 CgEFm~~~~~gt~~~l~CaaCg 124 (314)
|.-+|-. ...+++||.||+
T Consensus 14 C~~C~v~---N~a~~~kC~aCe 32 (47)
T 2ebq_A 14 CDTCLVQ---NKPEAIKCVACE 32 (47)
T ss_dssp CSSSCCE---ECSSCSBCSSSC
T ss_pred CCeeecc---CccCCceecCcC
Confidence 5555543 335789999996
No 201
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=23.20 E-value=16 Score=28.82 Aligned_cols=39 Identities=10% Similarity=0.182 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 254 EKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 254 ~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
+.-.+.|.+-|+.. ...+++|++.||++.+|-.+|.|+.
T Consensus 15 ~aa~~l~~~~G~~~-----~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (206)
T 3dew_A 15 EVATELFAQKGFYG-----VSIRELAQAAGASISMISYHFGGKE 53 (206)
T ss_dssp HHHHHHHHHHCGGG-----CCHHHHHHHHTCCHHHHHHHSCHHH
T ss_pred HHHHHHHhcCCccc-----CcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 33445677755544 3678899999999999999998763
No 202
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=22.82 E-value=21 Score=27.89 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 253 KEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 253 k~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
++...+.|.+-||.. ....++|++.||++.+|--.|.|+.
T Consensus 15 l~aa~~l~~~~G~~~-----~tv~~Ia~~agvs~~t~Y~~F~sK~ 54 (195)
T 3ppb_A 15 LETALQLFVSQGFHG-----TSTATIAREAGVATGTLFHHFPSKE 54 (195)
T ss_dssp HHHHHHHHHHTCSTT-----SCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhcCccc-----CCHHHHHHHhCCChhHHHHHcCCHH
Confidence 344445677744433 4678899999999999999998864
No 203
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=22.78 E-value=79 Score=24.91 Aligned_cols=45 Identities=7% Similarity=0.024 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHh--------C--CCCCeeeeecccc
Q 048741 245 RTKFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEI--------G--VKRRVLKVWMHNN 296 (314)
Q Consensus 245 RT~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~ei--------G--v~~~vVKVWFQNR 296 (314)
+.+++.++++.+.++... +...... +++.++ | ++..+|.-|++.+
T Consensus 88 ~~~~~~~~~~~I~~~~~~----~~~~s~~---~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQ----NPTMFAW---EIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp CSSSCHHHHHHHHHHHHH----CTTCCHH---HHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHh----CcchhHH---HHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 457899999999988876 4444333 334433 5 6778888887643
No 204
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=22.77 E-value=26 Score=23.01 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=9.1
Q ss_pred Ccccccccccc
Q 048741 114 TIEALTCSACN 124 (314)
Q Consensus 114 t~~~l~CaaCg 124 (314)
..+++||.||.
T Consensus 18 ~~~~~kC~aCe 28 (34)
T 3gj5_B 18 KADSTKCIACE 28 (34)
T ss_dssp CSSCSBCTTTC
T ss_pred ccccCEEcccC
Confidence 35789999996
No 205
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.74 E-value=23 Score=28.71 Aligned_cols=27 Identities=7% Similarity=0.357 Sum_probs=3.1
Q ss_pred CHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 271 EESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 271 d~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
+.....++|++.||++.+|-.+|.|+-
T Consensus 49 ~~~ti~~IA~~agvs~~t~Y~~F~sK~ 75 (212)
T 2np3_A 49 DATSLRRIAETAGVDQSLVHHFYGTKE 75 (212)
T ss_dssp ----------------------CCC-C
T ss_pred ccccHHHHHHHcCCCHHHHHHHhCCHH
Confidence 345778899999999999999998874
No 206
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=22.52 E-value=1.1e+02 Score=20.04 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccc
Q 048741 249 TQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNN 296 (314)
Q Consensus 249 T~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNR 296 (314)
|.+|+++|.+..-+ .+++.+|+++..+-|-|..-
T Consensus 15 s~e~k~~l~~~l~~--------------~l~~~lg~p~~~v~v~i~e~ 48 (63)
T 2x4k_A 15 SDEQLKNLVSEVTD--------------AVEKTTGANRQAIHVVIEEM 48 (63)
T ss_dssp CHHHHHHHHHHHHH--------------HHHHHHCCCGGGCEEEEEEE
T ss_pred CHHHHHHHHHHHHH--------------HHHHHhCcCcccEEEEEEEc
Confidence 78888888644444 67888899999888866543
No 207
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=22.49 E-value=1.7e+02 Score=21.97 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=33.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCc-ccCCCCHHHHHHHHHHhCCCC
Q 048741 242 KRFRTKFTQEQKEKMFNFAEKVGW-KIQKQEESVVQQFCQEIGVKR 286 (314)
Q Consensus 242 KR~RT~FT~eQk~~Le~~FerlGW-r~~~pd~~~reeLa~eiGv~~ 286 (314)
...++.+|.+|+..|+..|..+.- +.-+.+..+...+...+|+..
T Consensus 11 ~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~ 56 (161)
T 3fwb_A 11 GPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFEL 56 (161)
T ss_dssp TTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCC
Confidence 345678999999999999987542 234567778878788877543
No 208
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=22.48 E-value=28 Score=27.32 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=28.7
Q ss_pred HHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccc
Q 048741 255 KMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKH 298 (314)
Q Consensus 255 ~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRa 298 (314)
...+.|.+-|+.. ....++|++.||++.+|-..|.|+..
T Consensus 18 aa~~lf~~~G~~~-----~t~~~IA~~agvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 18 TGYRIMAVKGFSG-----VGLNEILQSAGVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHHCSTT-----CCHHHHHHHHTCCHHHHTTTCSCHHH
T ss_pred HHHHHHHHCCccc-----CCHHHHHHHhCCChhhHHHHcCCHHH
Confidence 3345566645433 36778999999999999999988643
No 209
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=22.27 E-value=9.1 Score=31.09 Aligned_cols=8 Identities=63% Similarity=1.203 Sum_probs=6.4
Q ss_pred eeeecccc
Q 048741 289 LKVWMHNN 296 (314)
Q Consensus 289 VKVWFQNR 296 (314)
|||||||-
T Consensus 54 vkvwmqnl 61 (127)
T 2jpf_A 54 VKVWMQNL 61 (127)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 68999983
No 210
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=22.21 E-value=13 Score=27.75 Aligned_cols=43 Identities=12% Similarity=0.405 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeec
Q 048741 247 KFTQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWM 293 (314)
Q Consensus 247 ~FT~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWF 293 (314)
.++.++.+++..+... +.-.+.....+||+++||++.+|+-..
T Consensus 10 ~~~~~~~~~IL~~L~~----~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 10 SIYQDQEQRILKFLEE----LGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHHHHHHHHHHH----HCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----cCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3456665666666666 332233456789999999998875433
No 211
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=22.14 E-value=19 Score=27.41 Aligned_cols=19 Identities=5% Similarity=0.029 Sum_probs=11.7
Q ss_pred CCCHHHHHHHHHHhCCCCC
Q 048741 269 KQEESVVQQFCQEIGVKRR 287 (314)
Q Consensus 269 ~pd~~~reeLa~eiGv~~~ 287 (314)
.|+......||..+||+..
T Consensus 48 ~p~~~~l~~la~~l~v~~~ 66 (114)
T 3op9_A 48 KPDIEKLIRLATYFHLSID 66 (114)
T ss_dssp CCCHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 3566666666666666543
No 212
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=22.07 E-value=45 Score=26.60 Aligned_cols=40 Identities=10% Similarity=0.281 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 253 KEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 253 k~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
++...++|.+-|+. ....+++|++.||++.+|=..|.|+.
T Consensus 19 l~aa~~lf~~~G~~-----~~tv~~Ia~~agvs~~t~Y~~F~sK~ 58 (195)
T 2iu5_A 19 AKAFKDLMQSNAYH-----QISVSDIMQTAKIRRQTFYNYFQNQE 58 (195)
T ss_dssp HHHHHHHHHHSCGG-----GCCHHHHHHHHTSCGGGGGGTCSSHH
T ss_pred HHHHHHHHHhCCCC-----eeCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 33344556663433 23678899999999999999998864
No 213
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=21.96 E-value=26 Score=27.94 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 254 EKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 254 ~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
+...+.|.+-|+.. ...+++|++.||++.+|-.+|.|+.
T Consensus 16 ~aa~~l~~~~G~~~-----~ti~~IA~~agvs~~t~Y~~F~sK~ 54 (193)
T 2dg8_A 16 AATLDLIAEEGIAR-----VSHRRIAQRAGVPLGSMTYHFTGIE 54 (193)
T ss_dssp HHHHHHHHHHCGGG-----CCHHHHHHHHTSCTHHHHHHCSSHH
T ss_pred HHHHHHHHHhChhh-----ccHHHHHHHhCCCchhhheeCCCHH
Confidence 33445566645433 3678899999999999999998864
No 214
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=21.93 E-value=29 Score=27.66 Aligned_cols=37 Identities=16% Similarity=0.378 Sum_probs=27.6
Q ss_pred HHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeecccccc
Q 048741 257 FNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKH 298 (314)
Q Consensus 257 e~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRRa 298 (314)
.+.|.+-|+.. ...+++|++.||++.+|-..|.|+..
T Consensus 27 ~~l~~~~G~~~-----~ti~~Ia~~agvs~~t~Y~~F~sK~~ 63 (207)
T 2rae_A 27 IELFTEQGFDA-----TSVDEVAEASGIARRTLFRYFPSKNA 63 (207)
T ss_dssp HHHHHHHCTTT-----SCHHHHHHHTTSCHHHHHHHCSSTTT
T ss_pred HHHHHHcCccc-----CCHHHHHHHhCCCcchHhhhCCCHHH
Confidence 35566634332 36778999999999999999988743
No 215
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=21.80 E-value=48 Score=27.31 Aligned_cols=36 Identities=8% Similarity=0.093 Sum_probs=23.3
Q ss_pred HHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 257 FNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 257 e~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
.+.|.+-||.. ....++|++.||++.+|-.+|.|+.
T Consensus 45 ~~lf~~~G~~~-----~s~~~IA~~AGvs~~tlY~~F~sKe 80 (237)
T 3kkd_A 45 MRLIVRDGVRA-----VRHRAVAAEAQVPLSATTYYFKDID 80 (237)
T ss_dssp HHHHHHHCGGG-----CCHHHHHHHHTSCTTTC-----CHH
T ss_pred HHHHHhcChhh-----cCHHHHHHHhCCChhHHHHHcCCHH
Confidence 35566655544 3677899999999999999998864
No 216
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=21.77 E-value=15 Score=29.21 Aligned_cols=35 Identities=6% Similarity=0.112 Sum_probs=26.7
Q ss_pred HHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 258 NFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 258 ~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
+.|.+-||.. ....++|++.||++.+|--+|.|+.
T Consensus 23 ~l~~~~G~~~-----~t~~~Ia~~agvs~~t~Y~~F~sK~ 57 (202)
T 3lwj_A 23 DLFIEKGYYN-----TSIRDIIALSEVGTGTFYNYFVDKE 57 (202)
T ss_dssp HHHHHHCTTT-----CCHHHHHHHHCSCHHHHHHHCSSHH
T ss_pred HHHHHcCccc-----CCHHHHHHHhCCCchhHHHHcCCHH
Confidence 4566644433 3678899999999999999998763
No 217
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.73 E-value=81 Score=22.82 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=32.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCcccCCCC--HHHHHHHHHHhC-CCCCeeeeecccccch
Q 048741 242 KRFRTKFTQEQKEKMFNFAEKVGWKIQKQE--ESVVQQFCQEIG-VKRRVLKVWMHNNKHN 299 (314)
Q Consensus 242 KR~RT~FT~eQk~~Le~~FerlGWr~~~pd--~~~reeLa~eiG-v~~~vVKVWFQNRRaK 299 (314)
...+..||.|+-+.|+++.++.| ... ...=..+|..++ -+..+++.-++|--.+
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g----~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYP----PEEVESRRWQKIADELGNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSC----CCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 34566899999999999998844 100 123356777774 4444455444443333
No 218
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=21.70 E-value=28 Score=23.48 Aligned_cols=25 Identities=24% Similarity=0.664 Sum_probs=17.1
Q ss_pred ccccccccccCCCCCCcccccccccc--cccchh
Q 048741 99 ATDGCGEFMPSGEEGTIEALTCSACN--CHRNFH 130 (314)
Q Consensus 99 a~DGCgEFm~~~~~gt~~~l~CaaCg--CHRnFH 130 (314)
.=|=|++||- ..|+|..|+ ||+--.
T Consensus 16 ~C~~C~~~l~-------qG~~C~~C~~~~H~~C~ 42 (52)
T 1faq_A 16 FCDICQKFLL-------NGFRCQTCGYKFHEHCS 42 (52)
T ss_dssp ECTTSSSEEC-------SEEECTTTTCCBCSTTS
T ss_pred CCCCcccccc-------cCCEeCCCCCeEChhHH
Confidence 3467999986 369999885 444433
No 219
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=21.40 E-value=28 Score=27.71 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 254 EKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 254 ~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
+...+.|.+-||..- ...++|++.||++.+|-..|.|+.
T Consensus 23 ~aa~~lf~~~G~~~~-----t~~~Ia~~agvs~~t~Y~~F~sK~ 61 (213)
T 2qtq_A 23 QTASNIMREGDVVDI-----SLSELSLRSGLNSALVKYYFGNKA 61 (213)
T ss_dssp HHHHHHHHHHTSSCC-----CHHHHHHHHCCCHHHHHHHHSSHH
T ss_pred HHHHHHHHHcCcccc-----cHHHHHHHhCCChhhHhHhcCCHH
Confidence 334466777565443 677899999999999999998863
No 220
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=21.30 E-value=76 Score=24.31 Aligned_cols=35 Identities=6% Similarity=0.139 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 249 TQEQKEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 249 T~eQk~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
|.+|+++|-+.+-+ .|.+.+|++...|-|.|....
T Consensus 69 t~eqk~~l~~~i~~--------------~l~~~lgi~~~~v~I~~~e~~ 103 (115)
T 2xcz_A 69 DGSRTQEVSELVCG--------------HIEQNLGIPADRIYIGFEDVP 103 (115)
T ss_dssp CTTHHHHHHHHHHH--------------HHHHHHCCCGGGEEEEEEECC
T ss_pred CHHHHHHHHHHHHH--------------HHHHHhCcCcccEEEEEEECC
Confidence 67888777544333 678899999999999998654
No 221
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.92 E-value=42 Score=23.43 Aligned_cols=19 Identities=21% Similarity=0.611 Sum_probs=12.3
Q ss_pred ccccccCCCCCCcccccccccc
Q 048741 103 CGEFMPSGEEGTIEALTCSACN 124 (314)
Q Consensus 103 CgEFm~~~~~gt~~~l~CaaCg 124 (314)
|.-+|-. ...++++|.||+
T Consensus 14 C~~C~v~---N~a~~~kC~aC~ 32 (47)
T 2ebr_A 14 CELCLVQ---NKADSTKCLACE 32 (47)
T ss_dssp CSSSCCC---CCSSCSBCSSSC
T ss_pred CCeeecC---CcCCcceecCcC
Confidence 4444443 335789999996
No 222
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=20.83 E-value=31 Score=27.65 Aligned_cols=25 Identities=4% Similarity=0.282 Sum_probs=21.7
Q ss_pred HHHHHHHHHhCCCCCeeeeeccccc
Q 048741 273 SVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 273 ~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
....++|++.||++.+|--.|.|+.
T Consensus 38 ~t~~~IA~~agvs~~t~Y~~F~sK~ 62 (218)
T 3gzi_A 38 VSIREIASLAGTDPGLIRYYFGSKE 62 (218)
T ss_dssp CCHHHHHHHHTSCTHHHHHHHSSHH
T ss_pred CCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3677899999999999999998864
No 223
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=20.70 E-value=30 Score=22.48 Aligned_cols=11 Identities=45% Similarity=0.930 Sum_probs=9.1
Q ss_pred Ccccccccccc
Q 048741 114 TIEALTCSACN 124 (314)
Q Consensus 114 t~~~l~CaaCg 124 (314)
.+++++|.||.
T Consensus 18 ~~~~~kC~aC~ 28 (33)
T 3gj3_B 18 KPEAVKCVACE 28 (33)
T ss_dssp CTTCSBCTTTC
T ss_pred ccccCEEcccC
Confidence 35789999996
No 224
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=20.64 E-value=45 Score=27.97 Aligned_cols=37 Identities=3% Similarity=0.065 Sum_probs=28.0
Q ss_pred HHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 256 MFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 256 Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
..++|.+-|+.. ...+++|++.||++.+|-.+|.|+.
T Consensus 55 A~~lf~~~G~~~-----~t~~~IA~~aGvs~~t~Y~~F~sKe 91 (245)
T 3aqt_A 55 ARTLMAERGVDN-----VGIAEITEGANIGTGTFYNYFPDRE 91 (245)
T ss_dssp HHHHHHHHCGGG-----CCHHHHHHHTTSCGGGGGGTCSSHH
T ss_pred HHHHHHhcCccc-----CcHHHHHHHhCCChHHHHHHcCCHH
Confidence 335566645543 3678899999999999999998864
No 225
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=20.61 E-value=16 Score=30.31 Aligned_cols=46 Identities=7% Similarity=0.087 Sum_probs=30.8
Q ss_pred CCCHHHH-HHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 247 KFTQEQK-EKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 247 ~FT~eQk-~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
..+.+++ +.-.++|.+-||.. ....++|++.||++.+|-.+|.|+.
T Consensus 29 ~~~r~~Il~aA~~lf~~~G~~~-----~s~~~IA~~aGvs~~tlY~~F~sK~ 75 (226)
T 2pz9_A 29 DSTRQRIVAAAKEEFARHGIAG-----ARVDRIAKQARTSKERVYAYFRSKE 75 (226)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred hHHHHHHHHHHHHHHHHhCccc-----CcHHHHHHHHCCChHHHHHHcCCHH
Confidence 3444443 33345566645433 3677899999999999999998763
No 226
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=20.56 E-value=25 Score=30.77 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=13.0
Q ss_pred Ccccccccccccccchh
Q 048741 114 TIEALTCSACNCHRNFH 130 (314)
Q Consensus 114 t~~~l~CaaCgCHRnFH 130 (314)
-.-.|+|.|||..|.--
T Consensus 116 r~~~l~C~ACGa~~~V~ 132 (170)
T 2g2k_A 116 QTIGNSCKACGYRGMLD 132 (170)
T ss_dssp TEEEEEETTTCCCCCSC
T ss_pred CEEEEEccccCCccccc
Confidence 34569999999987654
No 227
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.53 E-value=24 Score=30.43 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=13.5
Q ss_pred Ccccccccccccccchh
Q 048741 114 TIEALTCSACNCHRNFH 130 (314)
Q Consensus 114 t~~~l~CaaCgCHRnFH 130 (314)
-.-.|+|.|||..|..-
T Consensus 123 r~~~l~C~ACGa~~~V~ 139 (157)
T 2e9h_A 123 QTIGNSCKACGYRGMLD 139 (157)
T ss_dssp TEEEEECSSSCCEEECC
T ss_pred CEEEEEccCCCCCCccc
Confidence 34578999999988765
No 228
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=20.29 E-value=48 Score=25.72 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccc-c
Q 048741 253 KEKMFNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHN-N 296 (314)
Q Consensus 253 k~~Le~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQN-R 296 (314)
++...+.|.+-|+.. ....++|++.||++.+|-..|.| +
T Consensus 12 l~aa~~l~~~~G~~~-----~t~~~Ia~~agvs~~t~Y~~F~~sK 51 (191)
T 1sgm_A 12 LHTASRLSQLQGYHA-----TGLNQIVKESGAPKGSLYHFFPNGK 51 (191)
T ss_dssp HHHHHHHHHHHCTTT-----CCHHHHHHHHCCCSCHHHHSTTTCH
T ss_pred HHHHHHHHHHcCccc-----cCHHHHHHHHCCCchhHHHHccccH
Confidence 444446677745433 36778999999999999999987 5
No 229
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=20.03 E-value=18 Score=25.73 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCCeeeeeccccc
Q 048741 275 VQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 275 reeLa~eiGv~~~vVKVWFQNRR 297 (314)
..++|..|||++.+|.-|..+..
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHCCC
Confidence 46889999999999999998755
No 230
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=20.01 E-value=15 Score=29.13 Aligned_cols=35 Identities=6% Similarity=0.245 Sum_probs=26.7
Q ss_pred HHHHHcCcccCCCCHHHHHHHHHHhCCCCCeeeeeccccc
Q 048741 258 NFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNK 297 (314)
Q Consensus 258 ~~FerlGWr~~~pd~~~reeLa~eiGv~~~vVKVWFQNRR 297 (314)
++|.+.||.. ....++|++.||++.+|--.|.|+.
T Consensus 25 ~l~~~~G~~~-----~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (203)
T 3f1b_A 25 DVFSDRGFHE-----TSMDAIAAKAEISKPMLYLYYGSKD 59 (203)
T ss_dssp HHHHHHCTTT-----CCHHHHHHHTTSCHHHHHHHCCSHH
T ss_pred HHHHHcCccc-----ccHHHHHHHhCCchHHHHHHhCCHH
Confidence 4566644433 4678899999999999999998863
No 231
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.01 E-value=1e+02 Score=22.05 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=19.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcC
Q 048741 242 KRFRTKFTQEQKEKMFNFAEKVG 264 (314)
Q Consensus 242 KR~RT~FT~eQk~~Le~~FerlG 264 (314)
..+|-.||.+.-+.|..+.++.|
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G 28 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYG 28 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC
Confidence 34566899999999999999865
Done!