BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048743
(653 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224126605|ref|XP_002329596.1| predicted protein [Populus trichocarpa]
gi|222870305|gb|EEF07436.1| predicted protein [Populus trichocarpa]
Length = 701
Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/655 (63%), Positives = 513/655 (78%), Gaps = 9/655 (1%)
Query: 2 FCSSSVQQE-KLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRF 60
F S SV Q ++ W GSS VLLRKLE A + HQV EAW TF DF++L+G P +VN
Sbjct: 53 FSSGSVSQPGRICWRGSSNVVLLRKLEIALREHQVDEAWVTFIDFKKLYGFPTGSMVNML 112
Query: 61 ITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLML 120
I+ L YS++ HWLQKACDLV I K K LLQ +L KLS+SLARAQMPVPASMILR+ML
Sbjct: 113 ISRLSYSSDHHWLQKACDLVFLILKEKPGLLQFPVLTKLSISLARAQMPVPASMILRVML 172
Query: 121 GRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIF 180
REN+P +L V HMVKTEIG CLASNFL+Q+CD FLHLSA+ S A+++KPD MIF
Sbjct: 173 ERENMPPLTILWSVVSHMVKTEIGACLASNFLVQMCDCFLHLSAKGSVRAKVVKPDAMIF 232
Query: 181 NLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQ 240
NLVL ACV+F SSLKGQ I+ELMS+ GV+ADAHS+II +QIHEMN QRDE+KK K ++D+
Sbjct: 233 NLVLDACVKFKSSLKGQEIVELMSKAGVIADAHSVIIFSQIHEMNGQRDEIKKLKDHVDE 292
Query: 241 LSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISI 300
+ PF +Y QFY+SLL LHFKFDDID+A +L+LDM++++E +PN KLR D +K L+ I
Sbjct: 293 VGAPFIGYYCQFYDSLLKLHFKFDDIDSAAQLLLDMHKFQESVPNKKLRMDQEKRLLVPI 352
Query: 301 GSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKN 360
GS NL+ GLK+Q+MPELL+KDSIL ++ KQELV+FR+GKLL SNRA+AKL+NGY++HG+
Sbjct: 353 GSNNLKTGLKIQVMPELLQKDSILTVKHKQELVMFRSGKLLLSNRALAKLVNGYRRHGRT 412
Query: 361 SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS 420
++LS LLL ++++ H G+S+ CSDVIDA I+LG+LE AHDILDDM+ AG P+ ST + +
Sbjct: 413 TDLSKLLLCMQQDFHVLGQSSFCSDVIDACIRLGWLEMAHDILDDMDAAGAPIGSTLHMA 472
Query: 421 LLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS 480
LLTAYY +MF+EA+ALL++MRK+ V NLS EMV + A S + + SS KS
Sbjct: 473 LLTAYYCREMFKEAKALLRKMRKAGFVVNLSDEMVAT------ACLSEAANNASSSSSKS 526
Query: 481 DLAESLIQEMREE--AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFY 538
DL + LI+EMREE A S Y+LNSSIY+FCK KM+ DALK Y+RMQ MKI+PTV+TF
Sbjct: 527 DLIDFLIREMREEEKAIPSVGYELNSSIYYFCKAKMMEDALKTYKRMQHMKIQPTVQTFS 586
Query: 539 YLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGY 598
YL+ G SSL MYRDITILWGDIKRN+ S L VSRDLYE L LNFL+GGYFER MEVIGY
Sbjct: 587 YLIDGFSSLGMYRDITILWGDIKRNVGSKDLEVSRDLYEVLHLNFLRGGYFERAMEVIGY 646
Query: 599 MKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
MK++NMY DK MYK EFLK HK+LYR LK S ARTEAQSKRL +V+AFRKW GID
Sbjct: 647 MKERNMYCDKWMYKDEFLKLHKNLYRSLKASEARTEAQSKRLEHVKAFRKWVGID 701
>gi|255586271|ref|XP_002533788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526289|gb|EEF28601.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 689
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/651 (61%), Positives = 508/651 (78%), Gaps = 8/651 (1%)
Query: 4 SSSVQQEKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITD 63
S+ Q E+L WEGSS VLLRKLE + K+H++ EAW TFNDF+ L+G P+ +VV R + +
Sbjct: 46 STRTQPERLCWEGSSHGVLLRKLEVSLKDHRLNEAWVTFNDFKTLYGFPKGYVVCRLLAE 105
Query: 64 LCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRE 123
L YS++P WLQKAC+LV +I K K+DLL + L KLSLS ARAQMP+PASM+LR++L RE
Sbjct: 106 LSYSSDPRWLQKACNLVSQIFKEKSDLLPTETLTKLSLSFARAQMPIPASMVLRVILERE 165
Query: 124 NLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLV 183
N P LL L+ HMVKTE+GTCLASNFLIQ+C+ L +SA +++ A++IK DT+IFNLV
Sbjct: 166 NTPAVSLLRLIVFHMVKTEVGTCLASNFLIQICECLLRISANRNDHAKVIKLDTLIFNLV 225
Query: 184 LHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLST 243
L CVRF SSLKGQ ++E MS+TG++ADAHS++I+A+I+EMN RDE+KKFK +IDQ+S
Sbjct: 226 LEGCVRFKSSLKGQELVEWMSRTGIIADAHSVVIIAEIYEMNGLRDEIKKFKDHIDQVSA 285
Query: 244 PFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSP 303
PF HYQQ YE LL+LHF+FDD+DAA EL+LDMNR+R PN K + D QKP L+SIGS
Sbjct: 286 PFVCHYQQLYEVLLNLHFEFDDLDAASELVLDMNRFRGLNPNKKPKND-QKPCLVSIGSQ 344
Query: 304 NLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSEL 363
NLR GLK+QI+PE+L+K+S++++E + L+ +NGKLL SNRA+A I+GYK+ G+ SEL
Sbjct: 345 NLRAGLKIQILPEVLQKESVIRVEHGKGLLSSKNGKLLLSNRALANFIHGYKRQGRISEL 404
Query: 364 SWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423
+ +LLS++K+ + GES+LCSDVI A LG+LE AHDILDDME AG P TTY LLT
Sbjct: 405 TKVLLSMQKDFQTIGESSLCSDVIGACACLGWLETAHDILDDMETAGSPCSLTTYMVLLT 464
Query: 424 AYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLA 483
AY +MF+EA+AL++Q+RK+ L++NLS EMV E AD ++SS + KSDLA
Sbjct: 465 AYRSREMFKEADALVRQLRKAGLIKNLSVEMVAFTSLLERAD------NSSSSLSKSDLA 518
Query: 484 ESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
+ +IQE REE ++ T+++LNSSIYFFCK KM+GDALKIYR+MQ I+PTV+TF YLVY
Sbjct: 519 DFIIQETREEKEVTPTVHELNSSIYFFCKAKMMGDALKIYRKMQMKGIQPTVQTFAYLVY 578
Query: 543 GHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602
G+SSL YRDITILWGDIKRN+++ VSRDLYE LL+NFL+GGYFERVMEV GYMK+
Sbjct: 579 GYSSLGSYRDITILWGDIKRNMKNRNFLVSRDLYELLLVNFLRGGYFERVMEVAGYMKEC 638
Query: 603 NMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
MY DK MYKSEFLK HK+LY+ LK S+ R E Q KRL VQ FRKW GID
Sbjct: 639 KMYTDKWMYKSEFLKLHKNLYKCLKASDTRNEVQRKRLEFVQTFRKWVGID 689
>gi|449461311|ref|XP_004148385.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g17616-like [Cucumis sativus]
gi|449530891|ref|XP_004172425.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g17616-like [Cucumis sativus]
Length = 714
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/649 (54%), Positives = 462/649 (71%), Gaps = 5/649 (0%)
Query: 4 SSSVQQEKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITD 63
S+ V KL W GSS +VLL KLE A K+HQ+ EAWE F+DF++L+G P + + ++
Sbjct: 70 STYVHPTKLCWGGSSYDVLLGKLEIALKDHQIDEAWELFSDFRKLYGFPNDNFLLMLVSQ 129
Query: 64 LCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRE 123
L Y+++ L KA +LVL+ K K +LQLD L KL L LAR+QMP+PAS ILRLML
Sbjct: 130 LSYTSDCKRLHKAYNLVLQNWKEKPVVLQLDTLTKLVLGLARSQMPIPASEILRLMLQTR 189
Query: 124 NLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLV 183
LP +LL LV +HMVK+E+GT LASN L+Q+CD FL + +++ A+ +KPDTM+FNLV
Sbjct: 190 RLPRMELLQLVILHMVKSEVGTYLASNILVQICDCFLQQATSRNDQAKSMKPDTMLFNLV 249
Query: 184 LHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLST 243
LHACVRF S KGQ ++ELMSQT VVADAH+I+++A+I+EMN QRDELK K +IDQ+S
Sbjct: 250 LHACVRFKLSFKGQQLVELMSQTEVVADAHTIVLIARIYEMNDQRDELKNLKTHIDQVSP 309
Query: 244 PFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSP 303
HY QFY++LLSLHFK+DD D+A L+L++ R+ E K ++ QK + IGS
Sbjct: 310 SLVCHYCQFYDALLSLHFKYDDFDSAANLMLEICRFGESNSIQKHWRELQKSSFLPIGSR 369
Query: 304 NLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSEL 363
+L+ GLK++IMPELL++DS+L +E K E + ++NGKL+ SN+ +AK I ++ G+ SEL
Sbjct: 370 HLKDGLKIKIMPELLQRDSVLNVEVKPEFINYKNGKLVASNKTVAKFIVELRRVGETSEL 429
Query: 364 SWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423
S LLL ++K S S LCSDV+ A I LG+LE AHDILDD+E G P+DST Y LL
Sbjct: 430 SKLLLQVQKGLASVEGSNLCSDVVKACICLGWLETAHDILDDVEAVGSPLDSTVYFLLLK 489
Query: 424 AYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLA 483
AYYK M REA+ L KQM K L + + +M S S + + L
Sbjct: 490 AYYKQDMLREADVLQKQMTKVGLSISTTEDMA-----SSTCSSSRILLPNIEVATHTSLV 544
Query: 484 ESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
ESLIQEM+E +++S + K NSSIYFFCK KMI DAL+ Y+RMQ++ I+PT +TF LV+G
Sbjct: 545 ESLIQEMKETSSMSRVLKFNSSIYFFCKAKMIEDALQAYKRMQQLGIQPTAQTFANLVFG 604
Query: 544 HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
S L+MYR+ITILWGDIKR ++S L +SRDLYE LLL F++GGYFERVME++G M++QN
Sbjct: 605 FSYLQMYRNITILWGDIKRRMQSTHLVLSRDLYECLLLCFIRGGYFERVMEIVGRMEEQN 664
Query: 604 MYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
MY DK MYK EFL HK+LYR LK S A+TEAQ KRL +V+AF+KW GI
Sbjct: 665 MYTDKRMYKREFLMLHKNLYRSLKPSEAKTEAQKKRLEDVRAFKKWVGI 713
>gi|356565393|ref|XP_003550925.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g17616-like [Glycine max]
Length = 684
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/652 (55%), Positives = 471/652 (72%), Gaps = 11/652 (1%)
Query: 4 SSSVQQEKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITD 63
S+S E+LSWE S+ E+LL KL+ A +NHQV EAWE+F+DF+ L+G PE H+VN+ I
Sbjct: 42 STSGHCERLSWERSTEEILLGKLKFALRNHQVQEAWESFHDFRSLYGYPEVHLVNQLIVQ 101
Query: 64 LCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRE 123
L YS+ W++K CDLVL+I + K+ LL D L KL+LSLAR QM PAS++LRLML +
Sbjct: 102 LSYSSNHAWMRKTCDLVLQIVREKSGLLHADTLTKLALSLARLQMTCPASVVLRLMLDKG 161
Query: 124 NLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLV 183
+P LL LV H+ KTEIGT LASN+L Q+CD + L+ +K N A ++ DT++FNLV
Sbjct: 162 CVPSMHLLSLVVFHIAKTEIGTYLASNYLFQVCDFYNCLNDKKGNHAVKVELDTLVFNLV 221
Query: 184 LHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLST 243
L ACVRF SLKG ++ELMS TG VADAHSI+I++QI EMN RDELK+ K +I ++S+
Sbjct: 222 LDACVRFKLSLKGLSLIELMSMTGTVADAHSIVIISQILEMNGLRDELKELKDHIGRVSS 281
Query: 244 PFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSP 303
+ HY+QFY+SLLSLHFKF+DIDAA +L+LDM + + QKP I+IGSP
Sbjct: 282 VYVWHYRQFYDSLLSLHFKFNDIDAAAKLVLDMTSSHNYDVKKECEKHLQKPCFIAIGSP 341
Query: 304 NLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSEL 363
LR LK+ I PELL KDS+LK+E +Q+L+ ++ GKL+ SN A+AK I+GYKK+G+ EL
Sbjct: 342 FLRTVLKIHIEPELLHKDSVLKVESRQDLIFYKGGKLVLSNSALAKFISGYKKYGRIGEL 401
Query: 364 SWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423
S LLLSI+ E +S S+LCSDVI A IQLG+LE AHDILDD+E G PM TY L++
Sbjct: 402 SKLLLSIQGELNSVAGSSLCSDVIGACIQLGWLECAHDILDDVEATGSPMGRDTYMLLVS 461
Query: 424 AYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLA 483
AY K M RE +ALLKQM+K L + LS + + E +T + + K+DLA
Sbjct: 462 AYQKGGMQRETKALLKQMKKVGLDKGLSDDAIDEHNLCE---------ETLNSLGKADLA 512
Query: 484 ESLIQEMREE--AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+L+Q +++E +Y LNSSI+FFCK MI DAL+ YRRM +MKI+PT +TF +L+
Sbjct: 513 IALVQILKDEDQTVFPLVYNLNSSIFFFCKAGMIEDALRAYRRMVDMKIQPTSQTFAFLM 572
Query: 542 YGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
G+SSL MYR+ITILWGDIKR + SG L +RDLYE LLLNFL+GGYFERV+EVI +M+
Sbjct: 573 CGYSSLGMYREITILWGDIKRFMRSGNLVGNRDLYELLLLNFLRGGYFERVLEVISHMRD 632
Query: 602 QNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
NMY DK MYK+EFL+ HK+LYR LK SN RTEAQSKRL +VQ FRKW GID
Sbjct: 633 HNMYPDKWMYKNEFLRLHKNLYRSLKASNTRTEAQSKRLEHVQEFRKWVGID 684
>gi|186511969|ref|NP_001119002.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635613|sp|B3H672.1|PP317_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g17616
gi|332658523|gb|AEE83923.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 674
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/656 (51%), Positives = 465/656 (70%), Gaps = 25/656 (3%)
Query: 2 FCSSSVQQEKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFI 61
FC+S V+ +L+WE SS+ +L +KLE+A K+H+V +AW+ F DF+RL+G PE ++NRF+
Sbjct: 38 FCTS-VKPARLNWEVSSQVILKKKLETALKDHRVDDAWDVFKDFKRLYGFPESVIMNRFV 96
Query: 62 TDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLG 121
T L YS++ WL KA DL K +L D+L KLSLSLARAQM A ILR+ML
Sbjct: 97 TVLSYSSDAGWLCKASDLTRLALKQNPGMLSGDVLTKLSLSLARAQMVESACSILRIMLE 156
Query: 122 RENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGA--ELIKPDTMI 179
+ + SD+L LV +HMVKTEIGTCLASN+L+Q+CD F+ + K N + ++KPDT++
Sbjct: 157 KGYVLTSDVLRLVVMHMVKTEIGTCLASNYLVQVCDRFVEFNVGKRNSSPGNVVKPDTVL 216
Query: 180 FNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYID 239
FNLVL +CVRFG SLKGQ ++ELM++ VVADA+SI+I++ I+EMN RDEL+KFK +I
Sbjct: 217 FNLVLGSCVRFGFSLKGQELIELMAKVDVVADAYSIVIMSCIYEMNGMRDELRKFKEHIG 276
Query: 240 QLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLIS 299
Q+ HYQ F+++LLSL FKFDDI +AG L LDM + + + L D++KP ++
Sbjct: 277 QVPPQLLGHYQHFFDNLLSLEFKFDDIGSAGRLALDMCKSKVLVSVENLGFDSEKPRVLP 336
Query: 300 IGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGK 359
+GS ++R GLK+ I P+LL++DS L ++ + V + N KL +N+ +AKL+ GYK+H
Sbjct: 337 VGSHHIRSGLKIHISPKLLQRDSSLGVDTEATFVNYSNSKLGITNKTLAKLVYGYKRHDN 396
Query: 360 NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYK 419
ELS LL S+ G S LC+DVIDA + +G+LEAAHDILDDM AG+PM+ TY+
Sbjct: 397 LPELSKLLFSL-------GGSRLCADVIDACVAIGWLEAAHDILDDMNSAGYPMELATYR 449
Query: 420 SLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDK 479
+L+ YYK KM R AE LLKQM K+ L+ + S E+VVS E +K + +
Sbjct: 450 MVLSGYYKSKMLRNAEVLLKQMTKAGLITDPSNEIVVS---PETEEKDS---------EN 497
Query: 480 SDLAESLIQEM---REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
++L + L+QE+ ++ A S +Y+LNSS+Y+FCK KM GDAL YR++ +MKI PTV++
Sbjct: 498 TELRDLLVQEINAGKQMKAPSMLYELNSSLYYFCKAKMQGDALITYRKIPKMKIPPTVQS 557
Query: 537 FYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVI 596
F+ L+ +SSL MYR+ITI+WGDIKRNI S L ++DL E L++NFL+GGYFERVME+I
Sbjct: 558 FWILIDMYSSLGMYREITIVWGDIKRNIASKNLKTTQDLLEKLVVNFLRGGYFERVMELI 617
Query: 597 GYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
YMK+ +MY D MYK+E+LK HK+LYR LK S+A TEAQ++RL +V+ FRK GI
Sbjct: 618 SYMKENDMYNDLTMYKNEYLKLHKNLYRTLKASDAVTEAQAQRLEHVKTFRKLVGI 673
>gi|297804420|ref|XP_002870094.1| hypothetical protein ARALYDRAFT_354992 [Arabidopsis lyrata subsp.
lyrata]
gi|297315930|gb|EFH46353.1| hypothetical protein ARALYDRAFT_354992 [Arabidopsis lyrata subsp.
lyrata]
Length = 1299
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 330/656 (50%), Positives = 464/656 (70%), Gaps = 25/656 (3%)
Query: 2 FCSSSVQQEKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFI 61
FC+S ++ +LSWE SS+ +L +KLE+A K+H+V +AW+ F DF+RL+G PE ++NRF+
Sbjct: 74 FCTS-IEPARLSWEVSSQVILKKKLETALKDHRVDDAWDVFKDFKRLYGFPESVIMNRFV 132
Query: 62 TDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLG 121
T L YS++ WL KA DL K +L D+L KLSLSLARAQM A ILR+ML
Sbjct: 133 TVLSYSSDSGWLCKASDLTRLALKQNPGMLSGDVLTKLSLSLARAQMVESACSILRIMLE 192
Query: 122 RENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSN--GAELIKPDTMI 179
++ + SD+L LV +H+VKTE+GTCLASN+L+Q+CD F+ L+ K N ++KPDT +
Sbjct: 193 KDFVLTSDVLRLVVMHLVKTEVGTCLASNYLVQVCDRFVELNVGKRNSSAGNVVKPDTAL 252
Query: 180 FNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYID 239
FNLVL +CVRFG SLKGQ ++ELM++ VVADA+SI+I++ I+EMN RDEL+KFK +I
Sbjct: 253 FNLVLGSCVRFGFSLKGQELIELMAKVDVVADAYSIVIMSCIYEMNGMRDELRKFKEHIG 312
Query: 240 QLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLIS 299
Q+ HY+ +++LLSL FKFDDI +AG L+LDM + ++ + L D++KP ++
Sbjct: 313 QVPPQLLCHYRHLFDNLLSLEFKFDDIRSAGRLVLDMCKSKDLVSVQNLGFDSEKPRVLP 372
Query: 300 IGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGK 359
+GS ++R GLK+ I P+LL++DS L ++ + V F N KL +N+ +AKL+ G+K+H
Sbjct: 373 VGSHHIRSGLKIHISPKLLQRDSSLGVDTEATFVNFSNSKLGITNKTLAKLVYGHKRHDI 432
Query: 360 NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYK 419
ELS LL S+ G S LC+DVIDA + + +LEAAHDILD M AGHPM+ TY+
Sbjct: 433 LPELSKLLFSL-------GGSRLCADVIDACVTIDWLEAAHDILDVMVSAGHPMELATYR 485
Query: 420 SLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDK 479
+L+ YYK M R AE LLKQM K+ L+ + S E+VVS +E D+ +
Sbjct: 486 KVLSGYYKSNMLRNAEVLLKQMTKAGLITDPSNEIVVSPE-TEEKDR-----------EN 533
Query: 480 SDLAESLIQEM---REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
++L + L+QE+ ++E S +Y+LNSS+Y+FCK +M GDA+ YR++ +MKI PTV++
Sbjct: 534 TELRDLLVQEINAGKQEKVPSMLYELNSSLYYFCKARMQGDAIITYRKIPKMKIPPTVQS 593
Query: 537 FYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVI 596
F+ L+ +SSL MYR+ITI+WGDIKRNI S L V++DL E L++NFL+GGYFERVMEVI
Sbjct: 594 FWILIDMYSSLGMYREITIVWGDIKRNIASKNLKVTQDLLEKLVVNFLRGGYFERVMEVI 653
Query: 597 GYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
YMK+ +M D MYK+E+LK HK+LYR LK S+A TEAQ++RL +V+AFRK GI
Sbjct: 654 SYMKENDMINDLTMYKNEYLKLHKNLYRTLKASDAVTEAQAQRLEHVKAFRKLVGI 709
>gi|359496585|ref|XP_003635270.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g17616-like, partial [Vitis vinifera]
Length = 457
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 299/484 (61%), Positives = 356/484 (73%), Gaps = 28/484 (5%)
Query: 170 AELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRD 229
A+LIKPDTMIFN+VL CVR GSS KGQ I+ELM Q V ADAHSI+I+AQIHE+N QR
Sbjct: 2 AKLIKPDTMIFNIVLDGCVRCGSSFKGQQIIELMPQVXVGADAHSIVIIAQIHEINGQRL 61
Query: 230 ELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLR 289
+LKKFKC+IDQ+S HY++FY+SLLSLHF F+DID A L+LDM R R+ L K R
Sbjct: 62 DLKKFKCHIDQVSIQLLRHYRKFYDSLLSLHFTFNDIDDAAGLVLDMCRCRDSLSIRKDR 121
Query: 290 QDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAK 349
++ K L IGS +LR GLK+QI+PELL+KDS+ KM+ KQELVLF NGK + SN+A+ K
Sbjct: 122 NESYKTCLGPIGSYHLREGLKIQIVPELLQKDSVFKMDSKQELVLFSNGKYVLSNKALVK 181
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+ Y+ G+ ELS L+LS++KE + L SDVIDA IQLG+LE AH ILDDMELA
Sbjct: 182 LVIAYQGDGRIGELSRLMLSLQKELGTLEGGGLISDVIDACIQLGWLETAHGILDDMELA 241
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G P+ S+TY SLLTAYYK KM REA+ALLKQMRK+ V +LS EMV+
Sbjct: 242 GAPIGSSTYMSLLTAYYKGKMAREAKALLKQMRKAGFVVDLSDEMVM------------- 288
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
T+ L+ E+ L +Y+ NSSIYFFCK K I DAL+IYRRMQE +
Sbjct: 289 ---TTCLLGV------------EKTILPVVYEFNSSIYFFCKAKKIDDALRIYRRMQETE 333
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
I PTV+T LVYG+S L MYR+ITILWG+IKR+ ESG L V RDLYE L+LNFL+GGYF
Sbjct: 334 IEPTVQTSINLVYGYSCLNMYREITILWGNIKRSRESGSLVVCRDLYEFLVLNFLRGGYF 393
Query: 590 ERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKW 649
ERVMEVIG+MK+QNMY DK MYKSEFLK HK LYR LK SN RTEAQSKRL V+AFRKW
Sbjct: 394 ERVMEVIGHMKEQNMYCDKWMYKSEFLKFHKDLYRNLKASNTRTEAQSKRLEYVEAFRKW 453
Query: 650 AGID 653
AGID
Sbjct: 454 AGID 457
>gi|2245120|emb|CAB10542.1| hypothetical protein [Arabidopsis thaliana]
gi|7268514|emb|CAB78765.1| hypothetical protein [Arabidopsis thaliana]
Length = 1148
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 313/657 (47%), Positives = 436/657 (66%), Gaps = 61/657 (9%)
Query: 2 FCSSSVQQEKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFI 61
FC+S V+ +L+WE SS+ +L +KLE+A K+H+V +AW+ F DF+RL+G PE ++NRF+
Sbjct: 80 FCTS-VKPARLNWEVSSQVILKKKLETALKDHRVDDAWDVFKDFKRLYGFPESVIMNRFV 138
Query: 62 TDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLG 121
T L YS++ WL KA DL K +L D+L KLSLSLARAQM A ILR+ML
Sbjct: 139 TVLSYSSDAGWLCKASDLTRLALKQNPGMLSGDVLTKLSLSLARAQMVESACSILRIMLE 198
Query: 122 RENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGA--ELIKPDTMI 179
+ + SD+L LV +HMV CD F+ + K N + ++KPDT++
Sbjct: 199 KGYVLTSDVLRLVVMHMV----------------CDRFVEFNVGKRNSSPGNVVKPDTVL 242
Query: 180 FNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYID 239
FNLVL +CVRFG SLKGQ ++ELM++ VVADA+SI+I++ I+EMN RDEL+KFK +I
Sbjct: 243 FNLVLGSCVRFGFSLKGQELIELMAKVDVVADAYSIVIMSCIYEMNGMRDELRKFKEHIG 302
Query: 240 QLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLIS 299
Q FKFDDI +AG L LDM + + + L D++KP ++
Sbjct: 303 Q--------------------FKFDDIGSAGRLALDMCKSKVLVSVENLGFDSEKPRVLP 342
Query: 300 IGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGK 359
+GS ++R GLK+ I P+LL++DS L ++ + V + N KL +N+ +AKL+ GYK+H
Sbjct: 343 VGSHHIRSGLKIHISPKLLQRDSSLGVDTEATFVNYSNSKLGITNKTLAKLVYGYKRHDN 402
Query: 360 NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYK 419
ELS LL S+ G S LC+DVIDA + +G+LEAAHDILDDM AG+PM+ TY+
Sbjct: 403 LPELSKLLFSL-------GGSRLCADVIDACVAIGWLEAAHDILDDMNSAGYPMELATYR 455
Query: 420 SLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDK 479
+L+ YYK KM R AE LLKQM K+ L+ + S E+VVS E +K + +
Sbjct: 456 MVLSGYYKSKMLRNAEVLLKQMTKAGLITDPSNEIVVS---PETEEKDS---------EN 503
Query: 480 SDLAESLIQEM---REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
++L + L+QE+ ++ A S +Y+LNSS+Y+FCK KM GDAL YR++ +MKI PTV++
Sbjct: 504 TELRDLLVQEINAGKQMKAPSMLYELNSSLYYFCKAKMQGDALITYRKIPKMKIPPTVQS 563
Query: 537 FYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVI 596
F+ L+ +SSL MYR+ITI+WGDIKRNI S L ++DL E L++NFL+GGYFERVME+I
Sbjct: 564 FWILIDMYSSLGMYREITIVWGDIKRNIASKNLKTTQDLLEKLVVNFLRGGYFERVMELI 623
Query: 597 GYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
YMK+ +MY D MYK+E+LK HK+LYR LK S+A TEAQ++RL +V+ FRK D
Sbjct: 624 SYMKENDMYNDLTMYKNEYLKLHKNLYRTLKASDAVTEAQAQRLEHVKTFRKLVEFD 680
>gi|147766554|emb|CAN69520.1| hypothetical protein VITISV_018331 [Vitis vinifera]
Length = 444
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 283/431 (65%), Positives = 331/431 (76%), Gaps = 3/431 (0%)
Query: 225 NCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLP 284
N QRD+LKKFKC+IDQ+S A HY QFY+SLLSLHFKF+DID A L+LDM R + L
Sbjct: 15 NGQRDDLKKFKCHIDQVSIQLACHYWQFYDSLLSLHFKFNDIDGAAGLVLDMCRCWDSLS 74
Query: 285 NPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSN 344
K R D K L+ I S L+ GLKLQI+PELL+KDS+ KM+ KQEL+LFRNGK + SN
Sbjct: 75 IQKDRNDPHKTCLVPIESYYLKEGLKLQIVPELLQKDSVFKMDSKQELLLFRNGKYVLSN 134
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
+A+AKLI YK+ G+ ELS L+LS++KE + E L SDVIDA IQLG+LE AHDILD
Sbjct: 135 KALAKLIIAYKRDGRIGELSRLMLSLQKELGTL-EGGLISDVIDACIQLGWLETAHDILD 193
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
DMELAG P S TY SLLTAYYK KM REA+ALLKQMRK+ L+ +LS EMV++ S V
Sbjct: 194 DMELAGAPASSITYMSLLTAYYKGKMVREAKALLKQMRKAGLIVDLSDEMVMTTCLSGVV 253
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMR--EEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
DK+ T TS+ + KS LAESL++EM+ E+A L +YK NSSIYFFCK KMI DAL+IY
Sbjct: 254 DKNRMHTRTSTSIWKSGLAESLVREMKKQEKAILPVVYKFNSSIYFFCKAKMIDDALRIY 313
Query: 523 RRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLN 582
RMQEMKI PTV+TF LVYG+S L MYR+ITILWGDIK + +SG L V RDLYE L+LN
Sbjct: 314 GRMQEMKIEPTVQTFINLVYGYSCLNMYREITILWGDIKSSRKSGSLVVCRDLYEFLVLN 373
Query: 583 FLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVN 642
FL+GGYFERVMEVIG MK+QNMY DK MYK EFLK HK LYR LK SN RTEAQSKRL
Sbjct: 374 FLRGGYFERVMEVIGCMKEQNMYCDKWMYKREFLKFHKDLYRNLKASNTRTEAQSKRLEY 433
Query: 643 VQAFRKWAGID 653
V+AFR WAGID
Sbjct: 434 VEAFRTWAGID 444
>gi|89257692|gb|ABD65179.1| pentatricopeptide (PPR) repeat-containing protein [Brassica
oleracea]
Length = 567
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 287/600 (47%), Positives = 407/600 (67%), Gaps = 38/600 (6%)
Query: 57 VNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMIL 116
+NRF+T YS++ WL KA DL K + L+ D L KL LSLARAQM A IL
Sbjct: 1 MNRFVTVFSYSSDSAWLCKADDLSRLALKQNSGLVNSDALTKLLLSLARAQMSESACNIL 60
Query: 117 RLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPD 176
R ML + + D+L LV +HMVKTE+GTCLASN+L+Q+C F+ L K N + ++KPD
Sbjct: 61 RTMLEKGFVLTPDVLRLVVMHMVKTEVGTCLASNYLVQVCHRFMEL---KRN-SNVMKPD 116
Query: 177 TMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKC 236
T++FNLVL +CVRFG SLKGQ ++ELM++ VVAD HSI+I++ ++EMN RDELKK K
Sbjct: 117 TVLFNLVLGSCVRFGFSLKGQELIELMAKADVVADGHSIVIMSCVYEMNGMRDELKKLKE 176
Query: 237 YIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPY 296
I + + HY++ Y++LLSL FKFDDI +AG L+LD+ + + LP+ Q+ +K
Sbjct: 177 GIGHVPSQLLCHYRRLYDNLLSLEFKFDDIGSAGRLVLDICKKSKDLPSV---QNLEKVM 233
Query: 297 LISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKK 356
++ +GS ++R GLK++I PE+L++DS L ++ + V + KL +N+ +AKL+ GYK+
Sbjct: 234 VLPVGSHHIRSGLKIRISPEILQRDSSLGVDSEATFVSCADSKLGVTNKTLAKLVYGYKR 293
Query: 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST 416
ELS LL S+ G + LC+DVIDA + +G+LEAAHDILDD+ AG+PMD
Sbjct: 294 RENLPELSKLLFSV-------GGTKLCADVIDACVAVGWLEAAHDILDDLVSAGNPMDLV 346
Query: 417 TYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSL 476
TY+ +L+ Y+K KM R AE L++QM K+ LV + S E+ D
Sbjct: 347 TYRKVLSGYHKSKMLRNAEVLVRQMTKAGLVTDPS---------DEIKD----------- 386
Query: 477 MDKSDLAESLIQEMR---EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK-IRP 532
+ ++L L+QE+ + S +Y+LNSS+Y+FCK KM GDA+ YR++Q+MK I P
Sbjct: 387 CENTELRALLVQEINAGEQTKVPSMLYELNSSLYYFCKAKMQGDAVTTYRKIQKMKTISP 446
Query: 533 TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
TV++++ LV +SSL MYR+IT+ WGDIKRN+ S L V++DL E L++NFL+GGYFERV
Sbjct: 447 TVQSYWILVDMYSSLSMYREITVAWGDIKRNVASRELEVTQDLLEKLVVNFLRGGYFERV 506
Query: 593 MEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
MEVI MK++ MY D MYK+E+LK H++LYR LK ++A TEAQ++R+ +V+AFRK GI
Sbjct: 507 MEVISCMKEKGMYNDVAMYKNEYLKVHRNLYRTLKAADAVTEAQAQRVEHVKAFRKLVGI 566
>gi|357116839|ref|XP_003560184.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g17616-like [Brachypodium distachyon]
Length = 682
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 276/645 (42%), Positives = 402/645 (62%), Gaps = 14/645 (2%)
Query: 12 LSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPH 71
L WE SRE LLR ++ A K+ V +A + F +++ LHG+PE ++N I L Y++
Sbjct: 47 LPWESPSRETLLRTIDVALKDGNVDQALQAFGNYKSLHGLPEPRILNSVIVSLSYTSSRR 106
Query: 72 WLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLL 131
WLQ+A D+VL + + +LL L +L+L+LAR Q PVPAS +LR+ML LP +D+L
Sbjct: 107 WLQRAYDMVLSVYQSNGNLLNCSSLMRLALALARDQTPVPASAVLRIMLESGKLPDADML 166
Query: 132 LLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAEL--IKPDTMIFNLVLHACVR 189
+VF+HM+K+++G+ LA + L + C+ FLH +++ +L IK + +FN+VL +CV
Sbjct: 167 SMVFLHMLKSQVGSYLAVDVLAETCECFLHQISDRRQLKKLDPIKNNVALFNMVLESCVN 226
Query: 190 FGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLST-PFAHH 248
F +K Q IMELMS GVVAD ++++I +++ EM QRDEL K I+ S+ PF H
Sbjct: 227 FKCMIKAQKIMELMSLVGVVADVNTMVIASRVCEMVGQRDELMSMKRSIESFSSSPFFQH 286
Query: 249 YQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCG 308
Y Q Y+SLL+LHFK +D++AA + ++R ++ + QK +I IGS NL+ G
Sbjct: 287 YLQLYDSLLNLHFKCNDMEAAANFVTALHRIQKSCVS--FCDGLQKQGMIQIGSANLKTG 344
Query: 309 LKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLL 368
++ P L+K L + + L++ +GK L S +A+AKLI G K K + LS +
Sbjct: 345 YRIMFDPTKLDKGFSLDSKIQFGLLVSIDGKFLPSEKALAKLIIGCVKAAKLNTLSMFCI 404
Query: 369 SIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV 428
++ KE + SDVI+A IQ+G+L+AAHDILD +E A P+ TY SLL AY K
Sbjct: 405 TLHKEDI---KGISASDVINACIQMGWLQAAHDILDALESAEIPVGIGTYMSLLRAYEKE 461
Query: 429 KMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQ 488
+ E + LL+Q++K + + E S F+ + D + D KS L SL++
Sbjct: 462 QKPNEFDGLLQQIQK---MASSMPEFHTSPSFT-IKDIAKIAKDEMP-QTKSSLLSSLVE 516
Query: 489 EMRE-EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL 547
E ++ N+S+ FFC KM+ DAL Y+RM+E IRP + TF +++ G+SSL
Sbjct: 517 ETEHYNPGDHLTFEFNNSVRFFCMAKMMEDALSTYKRMREQNIRPNLHTFCHILCGYSSL 576
Query: 548 EMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
M+R+ITILWG+IKR +E G L V RDL + L+L+FL+GGYF RVMEVI YM N+Y D
Sbjct: 577 GMHREITILWGEIKRRLEHGELCVDRDLLDCLVLDFLKGGYFSRVMEVINYMSTHNVYCD 636
Query: 608 KLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
K Y+ FLK HK+LYR L + +TEAQSKR+ +VQAFR WAGI
Sbjct: 637 KWKYRQVFLKLHKNLYRNLNSLHDKTEAQSKRIEDVQAFRSWAGI 681
>gi|24059903|dbj|BAC21367.1| pentatricopeptide repeat-containing protein -like protein [Oryza
sativa Japonica Group]
gi|50509198|dbj|BAD30402.1| pentatricopeptide repeat-containing protein -like protein [Oryza
sativa Japonica Group]
gi|125600311|gb|EAZ39887.1| hypothetical protein OsJ_24325 [Oryza sativa Japonica Group]
Length = 692
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 268/652 (41%), Positives = 398/652 (61%), Gaps = 14/652 (2%)
Query: 5 SSVQQEKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDL 64
++ + L WE SRE LLR + +A + V + + F +++ LHG+PE V++R I L
Sbjct: 50 GTIAAKILPWEAPSRETLLRTINAALDDGNVDDVLQAFANYKTLHGLPEPRVLDRMIVSL 109
Query: 65 CYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGREN 124
Y++ WLQ+A D+VL + + +LL L KL+L+LAR QMP+PAS ++R++L
Sbjct: 110 SYASSRRWLQRAFDMVLSVYQCNGNLLNCGSLMKLALALARDQMPIPASTVVRIILESGK 169
Query: 125 LPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAEL--IKPDTMIFNL 182
LP D+L +V++HMVK+++G+ LA++ L + C+ FL ++ +L IK + +FN+
Sbjct: 170 LPDVDMLTMVYLHMVKSQVGSYLAADVLCETCECFLEQIGDRRQLKKLDPIKSNVTLFNM 229
Query: 183 VLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLS 242
VL +CV F +K Q IMELMS GVVAD +++ I + + EM Q+ EL K ID +
Sbjct: 230 VLKSCVDFKCMIKAQRIMELMSLVGVVADVNTVAIASLVFEMVGQQVELVNMKRSIDSFA 289
Query: 243 T-PFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIG 301
+ PF HY FY SLL+LHFK++D+DAA +L++D+ YR+ P + K +I IG
Sbjct: 290 SLPFIQHYLYFYGSLLNLHFKYNDMDAAAQLLVDL--YRQQKPRAFVGDSVHKQGVIQIG 347
Query: 302 SPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNS 361
S NL+ G ++ P ++K +L E + L+ +G + S +A+AK I G K K
Sbjct: 348 SGNLKTGFRIMFDPIKVDKGFVLDTESQFGLLAVIDGNIRPSEKALAKFIVGCLKASKVR 407
Query: 362 ELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSL 421
LS L+++ KE G S SDVI A I +G+L AAHDILDD+E A P+ TY SL
Sbjct: 408 ALSSFLITLHKEDLK-GPSH--SDVISACILMGWLHAAHDILDDLESAEIPVLICTYMSL 464
Query: 422 LTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSD 481
L AY K E L+Q++K + + F+ + D + D L + S
Sbjct: 465 LRAYEKENKPEEVNRFLQQIQKKAYTM---ADFHTNPSFT-IKDVAKIVKDEMPLRNSS- 519
Query: 482 LAESLIQEMREEAALSTI-YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
L SL+QE+ ++ + ++ N+SI FFCK M+ DAL Y+RM+E +RP++ TF ++
Sbjct: 520 LLSSLVQEIEHYSSREHLTFEFNNSILFFCKANMMDDALSTYKRMREQNVRPSLHTFCHI 579
Query: 541 VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
+ G+SSL M+R+I +LWG+IKR +E G L V RDL + L+LNFL GYF RVMEV+ YM
Sbjct: 580 LCGYSSLGMHREIAMLWGEIKRRLEYGELTVDRDLLDCLILNFLNAGYFARVMEVLSYMA 639
Query: 601 KQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
+ MY DK YK FLK HK+LYR L + + +TE QSKR+ +V+AFR WAG+
Sbjct: 640 NRKMYCDKWKYKQVFLKLHKNLYRNLNLLHEKTEQQSKRIEDVRAFRSWAGV 691
>gi|413919769|gb|AFW59701.1| hypothetical protein ZEAMMB73_115574 [Zea mays]
Length = 681
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 276/653 (42%), Positives = 410/653 (62%), Gaps = 30/653 (4%)
Query: 12 LSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPH 71
L WE SRE+LLRK+ A K+ V EA ++ +++++LHG+PE V+N I L Y +
Sbjct: 46 LPWEAPSREILLRKINCAMKDGNVEEALQSLSNYKKLHGLPEPRVLNSIIVSLSYMSSRR 105
Query: 72 WLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLL 131
WLQ+A D+VL + + +LL L +L+L+LAR QMP+PAS +LR++L LP D+L
Sbjct: 106 WLQRAFDMVLSVYQINRNLLNCGSLMRLALALARDQMPIPASTVLRIILESRKLPDVDML 165
Query: 132 LLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAEL--IKPDTMIFNLVLHACVR 189
+ F+HM+K+++G+ LA++ LI+ C+ FL ++ +L IK + +FN+VL +CV
Sbjct: 166 TMSFLHMLKSQVGSYLATDVLIETCESFLDQVTDRREMKKLDPIKNNATLFNMVLESCVT 225
Query: 190 FGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLST-PFAHH 248
F +K Q IMELMS GVVAD +++++ +++ EM QRDEL K ID L++ F +
Sbjct: 226 FKCIIKAQKIMELMSLIGVVADVNTVVMASRVFEMVGQRDELIHMKRSIDSLTSLTFLQY 285
Query: 249 YQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCG 308
Y FY+SLLSLHFK++D+DAA + ++D+ +++P P QK +I IGS NL+ G
Sbjct: 286 YLHFYDSLLSLHFKYNDMDAAAKFLIDL--HQQPKPGVLFCNGLQKQSIIQIGSGNLKSG 343
Query: 309 LKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELS-WLL 367
K+ P+ +++ +L E + LV+ +G LLH+ +A+AKLI G K LS + +
Sbjct: 344 YKIMFDPKKVDRGFVLGTESQFGLVVLTDGNLLHTEKALAKLIIGCVKSRNMHILSNFFI 403
Query: 368 LSIKKEHHSFG-ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
+S + +G E DV+ A IQ+G+L AAHDI+D++E AG P+ T Y SLL AY
Sbjct: 404 MSCQ-----YGLELISPQDVVTACIQMGWLHAAHDIIDNLESAGIPVGITGYVSLLRAYE 458
Query: 427 KVKMFREAEALLKQMRK--SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE 484
K E LL+Q++K S + + +EV SF+ +S L
Sbjct: 459 KENKSEEVNGLLQQIQKMASTMDDVHTDSPFTINNIAEVVKYEMSFSSSS-------LVA 511
Query: 485 SLIQEMR-----EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
+L E++ E AL +LN+S+ FFCK KM+ DAL Y+ M+E IRPT TF +
Sbjct: 512 ALADEIKHYNPGEHLAL----ELNNSVLFFCKAKMMEDALCTYKCMREQNIRPTSHTFCH 567
Query: 540 LVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
++ G+SS++M+R+IT+LWG+IKR E G L + RDL ++L+LNFL+GGYF RVME+I YM
Sbjct: 568 MLCGYSSMDMHREITMLWGEIKRRHEYGELDLDRDLLDSLVLNFLKGGYFSRVMEIISYM 627
Query: 600 KKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
K N+Y DK Y+ FLK HK+LYR L + +TEAQSKR+ +V+AFR WA I
Sbjct: 628 SKHNIYCDKWKYRRAFLKLHKNLYRNLDSLHDKTEAQSKRIEDVRAFRLWASI 680
>gi|147773546|emb|CAN61142.1| hypothetical protein VITISV_004317 [Vitis vinifera]
Length = 854
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 255/438 (58%), Positives = 309/438 (70%), Gaps = 31/438 (7%)
Query: 219 AQIHEMNCQ-RDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMN 277
+QIHE+N Q R +LKKFKC+IDQ+S HY++FY+SLLSLHF F+DID A L+LDM
Sbjct: 445 SQIHEINGQLRLDLKKFKCHIDQVSIQLLRHYRKFYDSLLSLHFTFNDIDDAAGLVLDMC 504
Query: 278 RYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRN 337
R R+ L K R ++ K L IGS +LR GLK+QI+PELL+KDS+ KM+ KQELVLF N
Sbjct: 505 RCRDSLSIRKDRNESYKTCLGPIGSYHLREGLKIQIVPELLQKDSVFKMDSKQELVLFSN 564
Query: 338 GKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLE 397
GK + SN+A+ KL+ Y+ G+ ELS L+LS++KE + L SDVIDA IQLG+LE
Sbjct: 565 GKYVLSNKALVKLVIAYQGDGRIGELSRLMLSLQKELGTLEGGGLISDVIDACIQLGWLE 624
Query: 398 AAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVS 457
AH ILDDMELAG P+ S+TY SLLTAYYK KM REA+ALLKQMRK+ V +LS EMV++
Sbjct: 625 TAHGILDDMELAGAPIGSSTYMSLLTAYYKGKMAREAKALLKQMRKAGFVVDLSDEMVMT 684
Query: 458 ERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR--EEAALSTIYKLNSSIYFFCKGKMI 515
V DK+ T TS+ + S LAESL+QEM+ E+ L
Sbjct: 685 TCLLGVVDKNRMHTRTSTSIGNSGLAESLVQEMKKXEKXILPV----------------- 727
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL 575
E +I PTV+T LVYG+S L MYR+ITILWG+IKR+ ESG L V RDL
Sbjct: 728 -----------ETEIEPTVQTSINLVYGYSCLNMYREITILWGNIKRSRESGSLVVCRDL 776
Query: 576 YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEA 635
YE L+LNFL+GGYFERVMEVIG+MK+QNMY DK MYKSEFLK HK LYR LK SN RTEA
Sbjct: 777 YEFLVLNFLRGGYFERVMEVIGHMKEQNMYCDKWMYKSEFLKFHKDLYRNLKASNTRTEA 836
Query: 636 QSKRLVNVQAFRKWAGID 653
QSKRL V+AFRKWAGID
Sbjct: 837 QSKRLEYVEAFRKWAGID 854
>gi|359474426|ref|XP_003631463.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g17616-like [Vitis vinifera]
Length = 486
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 237/369 (64%), Positives = 283/369 (76%), Gaps = 7/369 (1%)
Query: 4 SSSVQQEKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITD 63
S S Q E + WEGS VLLRKLE A K+HQV EAWETF D +RL+G P +V+R IT+
Sbjct: 11 SISSQPELICWEGSCHAVLLRKLEIALKDHQVDEAWETFKDIKRLYGFPSHSLVSRLITE 70
Query: 64 LCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRE 123
L YS+ PHWLQKACDLV I K K+DLL D L KLSLSL+RAQMP+PASMILRLML +
Sbjct: 71 LSYSSNPHWLQKACDLVYLILKEKSDLLHSDSLTKLSLSLSRAQMPIPASMILRLMLEKG 130
Query: 124 NLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLV 183
++P ++L L+ +HMVKTEIGT LASN+L+Q+CD FL LSA KSN A+LIKPDTMIFNLV
Sbjct: 131 SVPQKNVLWLIILHMVKTEIGTYLASNYLVQICDHFLLLSASKSNHAKLIKPDTMIFNLV 190
Query: 184 LHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLST 243
L ACVRFGSS KGQ I+ELM Q GV ADAHSIII+AQIHEMN QRD+LKKFKC+IDQ+S
Sbjct: 191 LDACVRFGSSFKGQQIIELMPQVGVGADAHSIIIIAQIHEMNGQRDDLKKFKCHIDQVSI 250
Query: 244 PFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSP 303
A HY+QFY+SLLSLHFKF+DID A L+LDM R + L K R D K L+ IGS
Sbjct: 251 QLACHYRQFYDSLLSLHFKFNDIDGAAGLVLDMCRCWDSLSIQKDRNDPHKTCLVPIGSY 310
Query: 304 NLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGK---- 359
L+ GLKLQI+PELL+KDS+ KM+ KQEL+LFRNGK + SN+A+AKLI YK+ G+
Sbjct: 311 YLKEGLKLQIVPELLQKDSVFKMDSKQELLLFRNGKYVLSNKALAKLIIAYKRDGRIVII 370
Query: 360 ---NSELSW 365
S++ W
Sbjct: 371 NILKSQVGW 379
>gi|125558409|gb|EAZ03945.1| hypothetical protein OsI_26081 [Oryza sativa Indica Group]
Length = 718
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 361/599 (60%), Gaps = 14/599 (2%)
Query: 5 SSVQQEKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDL 64
++ + L WE SRE LLR + +A + V + + F +++ LHG+PE V++R I L
Sbjct: 114 GTIAAKILPWEVPSRETLLRTINAALDDGNVDDVLQAFANYKTLHGLPEPRVLDRMIVSL 173
Query: 65 CYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGREN 124
Y++ WLQ+A D+VL + + +LL L KL+L+LAR QMP+PAS ++R++L
Sbjct: 174 SYASSRRWLQRAFDMVLSVYQCNGNLLNCGSLMKLALALARDQMPIPASTVVRIILESGK 233
Query: 125 LPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAEL--IKPDTMIFNL 182
LP D+L +V++HMVK+++G+ LA++ L + C+ FL ++ +L IK + +FN+
Sbjct: 234 LPDVDMLTMVYLHMVKSQVGSYLAADVLCETCECFLEQIGDRRQLKKLDPIKSNVTLFNM 293
Query: 183 VLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLS 242
VL +CV F +K Q IMELMS GVVAD +++ I + + EM QR EL K ID +
Sbjct: 294 VLKSCVDFKCMIKAQRIMELMSLVGVVADVNTVAIASLVFEMVGQRVELVNMKRSIDSFA 353
Query: 243 T-PFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIG 301
+ PF HY FY SLL+LHFK++D+DAA +L++D+ YR+ P + K +I IG
Sbjct: 354 SLPFIQHYLYFYGSLLNLHFKYNDMDAAAQLLVDL--YRQQKPRAFVGDSVHKQGVIQIG 411
Query: 302 SPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNS 361
S NL+ G ++ P ++K +L E + L+ +G + S +A+AK I G K K
Sbjct: 412 SGNLKTGFRIMFDPIKVDKGFVLDTESQFGLLAVIDGNIRPSEKALAKFIVGCLKASKVR 471
Query: 362 ELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSL 421
LS L+++ KE G S SDVI A I +G+L AAHDILDD+E A P+ TY SL
Sbjct: 472 ALSSFLITLHKEDLK-GPSH--SDVISACILMGWLHAAHDILDDLESAEIPVLICTYMSL 528
Query: 422 LTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSD 481
L AY K E L+Q++K + + F+ + D + D L + S
Sbjct: 529 LRAYEKENKPEEVNRFLQQIQKKAYTM---ADFHTNPSFT-IKDVAKIVKDEMPLRNSS- 583
Query: 482 LAESLIQEMREEAALSTI-YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
L SL+QE+ ++ + ++ N+SI FFCK M+ DAL Y+RM+E +RP++ TF ++
Sbjct: 584 LLSSLVQEIEHYSSREHLTFEFNNSILFFCKANMMDDALSTYKRMREQNVRPSLHTFCHI 643
Query: 541 VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
+ G+SSL M+R+I +LWG+IKR +E G L V RDL + L+LNFL GYF RVMEV+ YM
Sbjct: 644 LCGYSSLGMHREIAMLWGEIKRRLEYGELTVDRDLLDCLILNFLNAGYFARVMEVLSYM 702
>gi|297607252|ref|NP_001059695.2| Os07g0495300 [Oryza sativa Japonica Group]
gi|255677782|dbj|BAF21609.2| Os07g0495300 [Oryza sativa Japonica Group]
Length = 588
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 201/526 (38%), Positives = 307/526 (58%), Gaps = 14/526 (2%)
Query: 6 SVQQEKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLC 65
++ + L WE SRE LLR + +A + V + + F +++ LHG+PE V++R I L
Sbjct: 51 TIAAKILPWEAPSRETLLRTINAALDDGNVDDVLQAFANYKTLHGLPEPRVLDRMIVSLS 110
Query: 66 YSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENL 125
Y++ WLQ+A D+VL + + +LL L KL+L+LAR QMP+PAS ++R++L L
Sbjct: 111 YASSRRWLQRAFDMVLSVYQCNGNLLNCGSLMKLALALARDQMPIPASTVVRIILESGKL 170
Query: 126 PCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAEL--IKPDTMIFNLV 183
P D+L +V++HMVK+++G+ LA++ L + C+ FL ++ +L IK + +FN+V
Sbjct: 171 PDVDMLTMVYLHMVKSQVGSYLAADVLCETCECFLEQIGDRRQLKKLDPIKSNVTLFNMV 230
Query: 184 LHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLST 243
L +CV F +K Q IMELMS GVVAD +++ I + + EM Q+ EL K ID ++
Sbjct: 231 LKSCVDFKCMIKAQRIMELMSLVGVVADVNTVAIASLVFEMVGQQVELVNMKRSIDSFAS 290
Query: 244 -PFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGS 302
PF HY FY SLL+LHFK++D+DAA +L++D+ YR+ P + K +I IGS
Sbjct: 291 LPFIQHYLYFYGSLLNLHFKYNDMDAAAQLLVDL--YRQQKPRAFVGDSVHKQGVIQIGS 348
Query: 303 PNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSE 362
NL+ G ++ P ++K +L E + L+ +G + S +A+AK I G K K
Sbjct: 349 GNLKTGFRIMFDPIKVDKGFVLDTESQFGLLAVIDGNIRPSEKALAKFIVGCLKASKVRA 408
Query: 363 LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422
LS L+++ KE G S SDVI A I +G+L AAHDILDD+E A P+ TY SLL
Sbjct: 409 LSSFLITLHKEDLK-GPSH--SDVISACILMGWLHAAHDILDDLESAEIPVLICTYMSLL 465
Query: 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL 482
AY K E L+Q++K + + F+ + D + D L + S L
Sbjct: 466 RAYEKENKPEEVNRFLQQIQKKAYTM---ADFHTNPSFT-IKDVAKIVKDEMPLRNSS-L 520
Query: 483 AESLIQEMREEAALSTI-YKLNSSIYFFCKGKMIGDALKIYRRMQE 527
SL+QE+ ++ + ++ N+SI FFCK M+ DAL Y+RM+E
Sbjct: 521 LSSLVQEIEHYSSREHLTFEFNNSILFFCKANMMDDALSTYKRMRE 566
>gi|449458514|ref|XP_004146992.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
mitochondrial-like [Cucumis sativus]
gi|449503826|ref|XP_004162196.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
mitochondrial-like [Cucumis sativus]
Length = 796
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 203/691 (29%), Positives = 366/691 (52%), Gaps = 64/691 (9%)
Query: 26 LESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLK-IQ 84
+++A + ++ + W+ + ++ G P + VVN+ +T + E WL+KA DLV +
Sbjct: 107 IQTAIEEQRLNDTWKLYQQHMQMEGFPRKSVVNKLLTCFAETLEIQWLEKAYDLVEQAFA 166
Query: 85 KGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIG 144
+GK +LL+ D L LS SLA+ +P+PAS ILR ++ E+L + HM +T G
Sbjct: 167 EGKQNLLEKDPLIYLSYSLAKLGLPIPASTILRNLIKMEHLLPVAAWSAILAHMSQTGPG 226
Query: 145 TCLASNFLIQLCDVFL--HLSAEKSNGAELI--KPDTMIFNLVLHACVRFGSSLKGQHIM 200
LA+ ++++ +F + K A LI KP++ FN+ L CV FG++ K + ++
Sbjct: 227 AFLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNSTAFNIALSGCVLFGTTRKAEELL 286
Query: 201 ELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLH 260
++M + GV D + ++++ I+E N +R+ELKK + +ID+ ++QFY LL+ H
Sbjct: 287 DMMPRIGVKVDTNLLMVMVHIYERNGRREELKKLQRHIDEAHNLSDVQFRQFYSCLLTCH 346
Query: 261 FKFDDIDAAGELILDMNRYREPLPN-----------------PKLRQDAQKPYL------ 297
KF D+++A ++L M R + N P +D++K ++
Sbjct: 347 LKFGDLESASNMVLGMLRKAKIAKNSVATATLACNTAENHIKPSSGKDSEKNFICQNDGL 406
Query: 298 ---ISIGSPNL-------RCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAM 347
IS G + LKL I + + + + K++ + ELV G L + +
Sbjct: 407 KDKISNGKSIFFDDFVLDKNFLKLDIEAKEILRTLLTKLQLQVELVTTERGILQPTEAIL 466
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSF-GESTLCSDVIDALIQLGFLEAAHDILDDM 406
KL+ + + GK +L+ L+ ++E + ++ VI+A I LG+L+ AHD+LD+M
Sbjct: 467 VKLVRAFLEAGKTKDLAQFLIKAEREESPVSNDDSVLVHVINACISLGWLDQAHDLLDEM 526
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC-EMVVSERFSEVAD 465
LAG S+ Y SLL AY K RE +LL+ RK+ + + SC + +++ R + +
Sbjct: 527 HLAGVRTGSSVYGSLLKAYCKANRTREVASLLRDARKAGIQLDSSCYDALINSRVLQNDN 586
Query: 466 KSA---------------------SFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKLN 503
K A + S+ D++ L L+QE+++ + ++ N
Sbjct: 587 KGALKFFQEMKEAKIPRSGHQEFRRLVEKSAENDEAGLMAKLLQEIKDGQRVDYGLHDWN 646
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE-MYRDITILWGDIKR 562
+ I+FFCK +++ DA K ++M+ + P +TF+ +V G++++ Y ++T LWG++K
Sbjct: 647 NVIHFFCKKRLMQDAEKALKKMRSLGHCPNAQTFHSMVTGYAAIGGKYVEVTELWGEMKS 706
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHL 622
+ L ++L +++L F++GG+F R EV+ M+K M++DK Y++ FLK+H+ L
Sbjct: 707 IASASFLKFDQELLDSVLYTFVRGGFFARANEVVEVMEKDKMFIDKYKYRTLFLKYHRTL 766
Query: 623 YRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
Y+ K +TEAQ ++ AF+KW G+D
Sbjct: 767 YKG-KAPKFQTEAQLRKRETTLAFKKWVGLD 796
>gi|359479705|ref|XP_003632339.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
mitochondrial-like [Vitis vinifera]
Length = 784
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 210/702 (29%), Positives = 357/702 (50%), Gaps = 78/702 (11%)
Query: 22 LLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVL 81
L +LE+A H+ +AW+ F + G P + +VN +T S + WL+KA LV
Sbjct: 89 LCEELENAIDGHRYSDAWKLFEQHMGMEGFPRKSIVNTVLTSFSESLDVQWLEKAYGLVE 148
Query: 82 K-IQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVK 140
+ + K +LL+ + L +S LA +PVPAS +LR ++ E P + HM +
Sbjct: 149 RAFAESKQNLLEKETLIYISFGLASCGLPVPASTVLRKLVEMEEFPPVSAWSAILAHMSQ 208
Query: 141 TEIGTCLASNFLIQLCDVFLHLSAE---KSNGAEL-IKPDTMIFNLVLHACVRFGSSLKG 196
T G LA+ ++++ +F + KSN L +KP+T FN+ L C+ FG++ K
Sbjct: 209 TASGAYLAAELILEIGYLFQDGRVDPRKKSNRPLLAMKPNTTAFNIALAGCLLFGTTRKA 268
Query: 197 QHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESL 256
+ ++++M + GV D + +II+A I+E N +R++L+K K +ID+ ++QFY L
Sbjct: 269 EKLLDMMPRVGVKPDVNLLIIMAHIYERNGRREDLRKLKRHIDEAHNLSDIQFRQFYNCL 328
Query: 257 LSLHFKFDDIDAAGELILDMNR----YREPLPNPKL-------------RQDAQKP--YL 297
L+ H KF D+D+A ++L+M R R L L Q ++K +
Sbjct: 329 LTCHLKFGDLDSASHMVLEMLRKAREARNSLSAATLMFEAVGSGNTSTQEQVSEKSLSHR 388
Query: 298 ISIGSPNLRCGLKLQIMPELLEKD-SILKMEGKQELVLFR---------------NGKLL 341
S G N R L I E +D + LK+E + + +L R G L
Sbjct: 389 KSDGLENARPNTSLSISYEEFSRDRNFLKLEAEAKEILDRLLAKLQMQVEFITTERGILQ 448
Query: 342 HSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG-ESTLCSDVIDALIQLGFLEAAH 400
+ R KL+ + + GK +L+ L+ +KE +++ VI++ I LG+L+ AH
Sbjct: 449 PTERIYVKLVKAFLEAGKTKQLAEFLIKAEKEDSPVSTDNSALVHVINSCILLGWLDQAH 508
Query: 401 DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC-EMVVSER 459
D+LD+M LAG S+ Y SLL AY K E +LL+ RK+ + + SC E ++ R
Sbjct: 509 DLLDEMRLAGVRTGSSVYSSLLKAYCKANRAGEITSLLRDARKAGVQLDSSCYEALIQSR 568
Query: 460 ------------FSEVAD---------------KSASFTDTSSLMDKSDLAESLIQEMRE 492
F E+ + K + + + LM K L+ E++E
Sbjct: 569 VLQKDTEGALHVFKEMKEAKIPRSGHREFEMLVKGCAESGEAGLMAK------LLHEIKE 622
Query: 493 EAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE-MY 550
E + ++ N+ I+FFC+ +++ DA K ++M+ + P +TF+ +V G++++ Y
Sbjct: 623 EQRVDCGVHDWNNVIHFFCRKRLMQDAEKALKKMRSLGHAPNAQTFHSMVTGYAAIGGKY 682
Query: 551 RDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLM 610
++T LWG++K S + ++L + +L F++GG+F R EV+ M++ M++DK
Sbjct: 683 VEVTELWGEMKSFASSSSMKFDQELLDAVLYTFVRGGFFVRANEVVEMMERGKMFIDKYK 742
Query: 611 YKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
Y++ FLK+HK LY+ K +TEAQ +R F+KW G+
Sbjct: 743 YRTLFLKYHKTLYKS-KPPKVQTEAQFRRRDAALTFKKWVGL 783
>gi|296085227|emb|CBI28722.3| unnamed protein product [Vitis vinifera]
Length = 1361
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 210/702 (29%), Positives = 357/702 (50%), Gaps = 78/702 (11%)
Query: 22 LLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVL 81
L +LE+A H+ +AW+ F + G P + +VN +T S + WL+KA LV
Sbjct: 666 LCEELENAIDGHRYSDAWKLFEQHMGMEGFPRKSIVNTVLTSFSESLDVQWLEKAYGLVE 725
Query: 82 K-IQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVK 140
+ + K +LL+ + L +S LA +PVPAS +LR ++ E P + HM +
Sbjct: 726 RAFAESKQNLLEKETLIYISFGLASCGLPVPASTVLRKLVEMEEFPPVSAWSAILAHMSQ 785
Query: 141 TEIGTCLASNFLIQLCDVFLHLSAE---KSNGAEL-IKPDTMIFNLVLHACVRFGSSLKG 196
T G LA+ ++++ +F + KSN L +KP+T FN+ L C+ FG++ K
Sbjct: 786 TASGAYLAAELILEIGYLFQDGRVDPRKKSNRPLLAMKPNTTAFNIALAGCLLFGTTRKA 845
Query: 197 QHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESL 256
+ ++++M + GV D + +II+A I+E N +R++L+K K +ID+ ++QFY L
Sbjct: 846 EKLLDMMPRVGVKPDVNLLIIMAHIYERNGRREDLRKLKRHIDEAHNLSDIQFRQFYNCL 905
Query: 257 LSLHFKFDDIDAAGELILDMNR----YREPLPNPKL-------------RQDAQKP--YL 297
L+ H KF D+D+A ++L+M R R L L Q ++K +
Sbjct: 906 LTCHLKFGDLDSASHMVLEMLRKAREARNSLSAATLMFEAVGSGNTSTQEQVSEKSLSHR 965
Query: 298 ISIGSPNLRCGLKLQIMPELLEKD-SILKMEGKQELVLFR---------------NGKLL 341
S G N R L I E +D + LK+E + + +L R G L
Sbjct: 966 KSDGLENARPNTSLSISYEEFSRDRNFLKLEAEAKEILDRLLAKLQMQVEFITTERGILQ 1025
Query: 342 HSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG-ESTLCSDVIDALIQLGFLEAAH 400
+ R KL+ + + GK +L+ L+ +KE +++ VI++ I LG+L+ AH
Sbjct: 1026 PTERIYVKLVKAFLEAGKTKQLAEFLIKAEKEDSPVSTDNSALVHVINSCILLGWLDQAH 1085
Query: 401 DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC-EMVVSER 459
D+LD+M LAG S+ Y SLL AY K E +LL+ RK+ + + SC E ++ R
Sbjct: 1086 DLLDEMRLAGVRTGSSVYSSLLKAYCKANRAGEITSLLRDARKAGVQLDSSCYEALIQSR 1145
Query: 460 ------------FSEVAD---------------KSASFTDTSSLMDKSDLAESLIQEMRE 492
F E+ + K + + + LM K L+ E++E
Sbjct: 1146 VLQKDTEGALHVFKEMKEAKIPRSGHREFEMLVKGCAESGEAGLMAK------LLHEIKE 1199
Query: 493 EAALST-IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE-MY 550
E + ++ N+ I+FFC+ +++ DA K ++M+ + P +TF+ +V G++++ Y
Sbjct: 1200 EQRVDCGVHDWNNVIHFFCRKRLMQDAEKALKKMRSLGHAPNAQTFHSMVTGYAAIGGKY 1259
Query: 551 RDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLM 610
++T LWG++K S + ++L + +L F++GG+F R EV+ M++ M++DK
Sbjct: 1260 VEVTELWGEMKSFASSSSMKFDQELLDAVLYTFVRGGFFVRANEVVEMMERGKMFIDKYK 1319
Query: 611 YKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
Y++ FLK+HK LY+ K +TEAQ +R F+KW G+
Sbjct: 1320 YRTLFLKYHKTLYKS-KPPKVQTEAQFRRRDAALTFKKWVGL 1360
>gi|224082666|ref|XP_002306785.1| predicted protein [Populus trichocarpa]
gi|222856234|gb|EEE93781.1| predicted protein [Populus trichocarpa]
Length = 750
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 205/694 (29%), Positives = 356/694 (51%), Gaps = 63/694 (9%)
Query: 22 LLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVL 81
L ++E+A H+ +AW+ F + G P + +VN+ +T S + WL+KA LV
Sbjct: 58 LCMEIENAIDEHRFNDAWKLFEQHLHMDGFPRKSIVNKLLTSYSASLDVPWLEKAYGLVE 117
Query: 82 K-IQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVK 140
+ I++ K +LL+ + L LS LA+ +PVPAS +LR ++ E P + HM
Sbjct: 118 QTIEESKQNLLEKEPLIYLSFVLAKCGLPVPASTVLRKLIQMEQYPPVTAWSAILAHMSL 177
Query: 141 TEIGTCLASNFLIQLCDVFL--HLSAEKSNGAELI--KPDTMIFNLVLHACVRFGSSLKG 196
T G LA+ ++++ +F + K A LI KP+T+ N+ L C+ FG++ K
Sbjct: 178 TAPGAYLAAELILEIGYLFQDGRVDPRKKINAPLIAMKPNTIAMNIALTGCLLFGTTRKA 237
Query: 197 QHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESL 256
+ ++++M + G+ AD + +II+A I+E N +R+EL+K + +ID + ++QFY L
Sbjct: 238 EQLLDMMPRIGIRADTNLLIIMAHIYERNGRREELRKLQRHIDDSQSLTDTQFRQFYNCL 297
Query: 257 LSLHFKFDDIDAAGELILDMNRYREPLPN---------PKLRQDAQKP-------YLISI 300
L+ H KF D+DAA ++L M R N P ++ + P + S
Sbjct: 298 LTCHLKFGDLDAASNMVLIMLRKAREARNSFATAALLFPIDKKSSPGPVSEESLSHKESG 357
Query: 301 GSPNLRCGLKLQIMPELLEKDS----------------ILKMEGKQELVLFRNGKLLHSN 344
G N R L I E +D +++++ + EL+ G L +
Sbjct: 358 GLGNNRSNKDLTISYEEFYRDRNFLKLDTEAKEVLSTLLVELQMQVELITTERGILQPTE 417
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHH-SFGESTLCSDVIDALIQLGFLEAAHDIL 403
+ KL+ + + GK EL+ L+ +KE + + + VI++ I LG+L+ AHD+L
Sbjct: 418 KIYVKLVKAFLESGKTKELAAFLIKAEKEDSPASNDDSALVHVINSCISLGWLDQAHDLL 477
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL-----VQNLSCEMVVSE 458
D+M LAG S+ Y SLL AY K E ALL+ R++ + N E V +
Sbjct: 478 DEMCLAGIRTSSSVYASLLKAYCKANQTGEVTALLRDARRAGIQLDSSSYNALIEFRVIQ 537
Query: 459 R--------FSEVADKSASFTDTSSL---------MDKSDLAESLIQEMREE-AALSTIY 500
+ F E+ + T ++ L L+QE++EE AA S ++
Sbjct: 538 KDTKEALHIFKEMKEAKIPRTGHQEFEMLVKGCAEGGEAGLMAKLLQEIKEEQAADSGVH 597
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL-EMYRDITILWGD 559
N+ I+FFCK +++ DA K ++M+ + P +TF+ +V G++++ Y ++T LWG+
Sbjct: 598 DWNNVIHFFCKKRLMQDAEKALKKMRSLGHAPNAQTFHSMVTGYAAIGGKYIEVTELWGE 657
Query: 560 IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHH 619
+K + + ++L +++L F++GG+F R EV+ M+K M++DK Y++ +LK+H
Sbjct: 658 MKSIASATSMKFDQELLDSVLYTFVRGGFFSRANEVVDMMEKGKMFIDKYKYRTLYLKYH 717
Query: 620 KHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
K LY+ K +TE+ K+ F+KW G++
Sbjct: 718 KTLYKG-KTPKIQTESLVKKREAALTFKKWLGLN 750
>gi|297739403|emb|CBI29512.3| unnamed protein product [Vitis vinifera]
Length = 883
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 153/254 (60%), Positives = 193/254 (75%)
Query: 204 SQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKF 263
+ +GV ADAHSI+I+AQIHE+N QR +LKKFKC+IDQ+S HY++FY+SLLSLHF F
Sbjct: 3 ATSGVGADAHSIVIIAQIHEINGQRLDLKKFKCHIDQVSIQLLRHYRKFYDSLLSLHFTF 62
Query: 264 DDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSI 323
+DID A L+LDM R R+ L K R ++ K L IGS +LR GLK+QI+PELL+KDS+
Sbjct: 63 NDIDDAAGLVLDMCRCRDSLSIRKDRNESYKTCLGPIGSYHLREGLKIQIVPELLQKDSV 122
Query: 324 LKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC 383
KM+ KQELVLF NGK + SN+A+ KL+ Y+ G+ ELS L+LS++KE + L
Sbjct: 123 FKMDSKQELVLFSNGKYVLSNKALVKLVIAYQGDGRIGELSRLMLSLQKELGTLEGGGLI 182
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
SDVIDA IQLG+LE AH ILDDMELAG P+ S+TY SLLTAYYK KM REA+ALLKQMRK
Sbjct: 183 SDVIDACIQLGWLETAHGILDDMELAGAPIGSSTYMSLLTAYYKGKMAREAKALLKQMRK 242
Query: 444 SCLVQNLSCEMVVS 457
+ V +LS EMV++
Sbjct: 243 AGFVVDLSDEMVMT 256
>gi|255567544|ref|XP_002524751.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535935|gb|EEF37594.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 787
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 202/689 (29%), Positives = 349/689 (50%), Gaps = 63/689 (9%)
Query: 26 LESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLK-IQ 84
+E A ++ +AW+ F ++ G P++ VVN+ + + S + WL+KA LV + I+
Sbjct: 99 VEHAINELRLSDAWKLFEKHMQMEGFPQKSVVNKLLASIAESNDVPWLEKAYGLVEQAIK 158
Query: 85 KGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIG 144
+ K +LL+ D L LS +LA+ + V AS +LR ++ E P + HM T G
Sbjct: 159 ESKQNLLEKDTLIFLSFNLAKCGLAVLASTVLRKLIEMEQYPPVTAWSAILAHMSLTAPG 218
Query: 145 TCLASNFLIQLCDVFL--HLSAEKSNGAELI--KPDTMIFNLVLHACVRFGSSLKGQHIM 200
LA+ ++++ +F + K A LI KP+T N+ L C+ FG++ K + ++
Sbjct: 219 AYLAAELILEIGYLFQDGKVDPRKKCNATLIAMKPNTTSVNIALAGCLVFGTTRKAEQLL 278
Query: 201 ELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLH 260
+L+ + G+ +A +I +A I+E N +R EL K + +ID+ + Y+QFY LLS H
Sbjct: 279 DLIPRVGIKVNATLLITMAHIYERNGRRQELMKLQRHIDEAHSISDIQYRQFYNCLLSCH 338
Query: 261 FKFDDIDAAGELILDM----NRYREPLPNPKLRQDA----------------QKPYLISI 300
KF D+D+A +++L M R L K A ++P ++
Sbjct: 339 LKFGDLDSASDMVLKMLWKAKEARNSLAAAKFVYQADSKSSHEQISPDSVNHREPDGLNK 398
Query: 301 GSPNL------------RCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMA 348
PN R LKL + L + K++ + EL+ G L + +
Sbjct: 399 SRPNRTPMISHGEFLKDRDFLKLDAEAKGLLDSLLAKLQTQVELITTDRGILQPTEKVYV 458
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHH-SFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
KL+ + + GK EL+ L +KE S + + VI++ I L +L+ AHD+LD+M
Sbjct: 459 KLVKAFLESGKTKELAAFLYKAEKEDSPSSNDDSPLVHVINSCISLDWLDQAHDLLDEMR 518
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC-EMVVSER------- 459
+AG M S+ Y SLL AY K E +ALL+ RK+ + + SC ++ R
Sbjct: 519 VAGVRMSSSVYASLLKAYCKANRAGEVKALLRDARKAGIQLDSSCYGALIKSRVLEEDTQ 578
Query: 460 -----FSEVADKSASFTDTSSLM---------DKSDLAESLIQEMREEAAL-STIYKLNS 504
F E+ D ++ L L++E+RE + S ++ N
Sbjct: 579 GALHLFKEMKDAKIPRAGNQEFEMLVKGCADDGEAGLLAKLLREIREGQTVDSGVHDWNY 638
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE-MYRDITILWGDIKRN 563
I+FFCK +++ DA K ++M+ + P +TF+ +V G++++ Y ++T LWG++K
Sbjct: 639 VIHFFCKKRLMQDAEKALKKMRSLGHAPNAQTFHSMVTGYAAIGGKYVEVTELWGEMKSI 698
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLY 623
+ + ++L +++L F++GG+F R EV+ M+K M++DK Y++ FLK+HK LY
Sbjct: 699 ASATSMKFDQELLDSVLYTFVRGGFFSRANEVVAMMEKVEMFIDKYKYRTLFLKYHKTLY 758
Query: 624 RRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
+ K +TEAQ+++ +F+KW G+
Sbjct: 759 KG-KSPKIQTEAQARKREAALSFKKWVGL 786
>gi|297727589|ref|NP_001176158.1| Os10g0422566 [Oryza sativa Japonica Group]
gi|255679411|dbj|BAH94886.1| Os10g0422566, partial [Oryza sativa Japonica Group]
Length = 788
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 206/692 (29%), Positives = 360/692 (52%), Gaps = 61/692 (8%)
Query: 21 VLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLV 80
+L ++E+A + +AW + + G+P + V+++ IT + + HWL ++ ++V
Sbjct: 97 LLALEIENAIDQQRFDDAWRAYEKHIHMDGVPRKSVLSKLITGFAETCDAHWLNQSYNVV 156
Query: 81 LKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVK 140
+ K+ LL+ + L LSL+LAR+ +P + ++R ++ E P + HM +
Sbjct: 157 NHAFEEKSKLLEKEPLIFLSLALARSSLPNLSINVVRKLIKMEAYPPVAAWSAIVAHMCQ 216
Query: 141 TEIGTCLASNFLIQLCDVFLHLSAE---KSNGAELI-KPDTMIFNLVLHACVRFGSSLKG 196
T G LA++ ++++ +F + + KSN L+ KP+++ FN++L A + FG++ K
Sbjct: 217 TATGAFLAADMVMEIGYLFQNNRVDPRKKSNRPLLLMKPNSLTFNIILTASLLFGTTKKA 276
Query: 197 QHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESL 256
+ ++ELM + G+ D S+I++A+I+E N RDE++K + ++++ +QFY+ L
Sbjct: 277 EQLLELMPRIGLKPDVSSLIVMARIYEQNGHRDEIQKLRRHVNEACGLSESELRQFYDCL 336
Query: 257 LSLHFKFDDIDAAGELILDM-----NRYR---------EPLPNPKLRQDAQKPYLISIGS 302
LS H KF D+D+A ++ILDM N R E + N K+ +K ++ GS
Sbjct: 337 LSCHLKFGDLDSAVDMILDMLKKGKNTKRSLEAAKAVLEAVENNKIYLPYEKTKPVNSGS 396
Query: 303 PNLRCGLKLQIMPEL------------LEKDSIL-----KMEGKQELVLFRNGKLLHSNR 345
N Q++ + L+ +L K++ + LV G L +
Sbjct: 397 SNKSVCTDSQMLNYISFFKDKSFARLELDARELLKLLSDKLQEQVGLVKSEYGILYPTET 456
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG-ESTLCSDVIDALIQLGFLEAAHDILD 404
AKL+ + + K S L+ L+ KE ES+ VI+A I LG+LE AHD+LD
Sbjct: 457 MYAKLVKAFLEANKISALASFLVKASKEDSPVSVESSFVVQVINACISLGWLEQAHDLLD 516
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFR-EAEALLKQMRKSCLVQNLSC-EMVVSERFSE 462
+M +G + ST Y SLL AY K + ALLK +++ + + SC E ++ R
Sbjct: 517 EMRFSGIRVGSTIYSSLLKAYCKEGHHEDDIAALLKDAQQAGIQLDPSCYEDLIQSRAHH 576
Query: 463 VADKSA--SFTDTSSL------------------MDKSDLAESLIQEMREEAALS-TIYK 501
A F + SL + + L L++E+R ++ I+
Sbjct: 577 NNTTGALNLFKELKSLNILKAGQNEFEMLVQGCNNNGAALTTKLVEEVRSGHPVNHAIHD 636
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL-EMYRDITILWGDI 560
N+ I+FFCK +++ DA K +M+ + P +TF+ LV G++++ Y ++T LWG++
Sbjct: 637 WNNVIHFFCKKRLMHDAHKALGKMKALGHTPNAQTFHSLVTGYAAVGGKYVEVTDLWGEM 696
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
K S + ++L ++LL F++GG+F R MEVI M+K M++DK YKS +LK+H+
Sbjct: 697 KVLATSSSMNFDQELLDSLLYCFVRGGFFLRAMEVIEMMEKGKMFIDKYKYKSLWLKYHR 756
Query: 621 HLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
LY+ K +TEAQ KR F++W G+
Sbjct: 757 TLYKG-KAPKVQTEAQLKRREAALHFKRWIGL 787
>gi|15218705|ref|NP_171809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200246|sp|Q9SA60.1|PPR6_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g03100, mitochondrial; Flags: Precursor
gi|4587568|gb|AAD25799.1|AC006550_7 Contains PF|00637 Clathrin 7-fold repeat. EST gb|AA721862 comes
from this gene [Arabidopsis thaliana]
gi|44917465|gb|AAS49057.1| At1g03100 [Arabidopsis thaliana]
gi|332189408|gb|AEE27529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 793
Score = 285 bits (728), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 203/699 (29%), Positives = 351/699 (50%), Gaps = 78/699 (11%)
Query: 25 KLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKI- 83
+++ A H+ EAW F ++ G P + VVN + S + +WLQK LV +
Sbjct: 101 EIQIAVDEHRCDEAWRLFEQHMQMEGFPRKSVVNNVVVCFAESLDSNWLQKGYSLVEQAY 160
Query: 84 QKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEI 143
++GK +LL+ + L LSL+LA++ M VPAS ILR ++ E P V HM
Sbjct: 161 EEGKQNLLEKEPLLYLSLALAKSGMAVPASTILRKLVETEEYPHVSAWSAVLAHMSLAGS 220
Query: 144 GTCLASNFLIQLCDVFLH--LSAEKSNGAELI--KPDTMIFNLVLHACVRFGSSLKGQHI 199
G+ L++ ++++ +F + + K + A L+ KP+T + N+ L C+ FG++ K + +
Sbjct: 221 GSYLSAELVLEIGYLFHNNRVDPRKKSNAPLLAMKPNTQVLNVALAGCLLFGTTRKAEQL 280
Query: 200 MELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSL 259
++++ + GV ADA+ ++I+A I+E N +R+EL+K + +ID+ + QFY LL
Sbjct: 281 LDMIPKIGVKADANLLVIMAHIYERNGRREELRKLQRHIDEACNLNESQFWQFYNCLLMC 340
Query: 260 HFKFDDIDAAGELILDMNR----YREPLPNPKLR---QDAQKPYLISIG----------S 302
H KF D+++A +++L+M R R L L D + Y + +
Sbjct: 341 HLKFGDLESASKMVLEMLRRGKVARNSLGAAILEFDTADDGRLYTKRVSGKGSEVKEHDN 400
Query: 303 PNLRCGLKLQIMP--ELLEKDSILKMEGKQ---------------ELVLFRNGKLLHSNR 345
P R ++P E LK+E + EL+ G L +
Sbjct: 401 PETRVVSIHSMIPYDEFSRDRKFLKLEAEAKDVLGALLAKLHVQVELITSERGVLQPTEE 460
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSF-GESTLCSDVIDALIQLGFLEAAHDILD 404
KL + + GK EL+ LL + E ++++ +VI+A I LG L+ AHD+LD
Sbjct: 461 IYVKLAKAFLESGKMKELAKFLLKAEHEDSPVSSDNSMLINVINACISLGMLDQAHDLLD 520
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC-EMVVSER---- 459
+M +AG S+ Y SLL AY RE +LL+ +K+ + + SC E ++ +
Sbjct: 521 EMRMAGVRTGSSVYSSLLKAYCNTNQTREVTSLLRDAQKAGIQLDSSCYEALIQSQVIQN 580
Query: 460 --------FSEVAD---------------KSASFTDTSSLMDKSDLAESLIQEMREEAAL 496
F E+ + K + LM K L++E+RE +L
Sbjct: 581 DTHGALNVFKEMKEAKILRGGNQKFEKLLKGCEGNAEAGLMSK------LLREIREVQSL 634
Query: 497 -STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL-EMYRDIT 554
+ ++ N+ I+FF K ++ DA K +RM+ + P +TF+ +V G++++ Y ++T
Sbjct: 635 DAGVHDWNNVIHFFSKKGLMQDAEKALKRMRSLGHSPNAQTFHSMVTGYAAIGSKYTEVT 694
Query: 555 ILWGDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
LWG++K + + ++L + +L F++GG+F R EV+ M+K+NM+VDK Y+
Sbjct: 695 ELWGEMKSIAAATSSMKFDQELLDAVLYTFVRGGFFSRANEVVEMMEKKNMFVDKYKYRM 754
Query: 614 EFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
FLK+HK Y+ K ++E+Q K+ F+KW G+
Sbjct: 755 LFLKYHKTAYKG-KAPKVQSESQLKKREAGLVFKKWLGL 792
>gi|242039671|ref|XP_002467230.1| hypothetical protein SORBIDRAFT_01g021710 [Sorghum bicolor]
gi|241921084|gb|EER94228.1| hypothetical protein SORBIDRAFT_01g021710 [Sorghum bicolor]
Length = 768
Score = 284 bits (727), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 209/685 (30%), Positives = 358/685 (52%), Gaps = 61/685 (8%)
Query: 25 KLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQ 84
++E+A + +AW ++ + G+P + V+++ IT L S +PH L+++ ++V
Sbjct: 87 EIENAIDEQRFDDAWRAYDKHVHMDGLPRKSVLSKLITGLAESCDPHRLKQSYNVVSHAF 146
Query: 85 KGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIG 144
+ K +LL + L LSL LAR +P A ++R ++ E P + HM +T G
Sbjct: 147 EEKQELLDKEPLIYLSLVLARCDLPNLAINVVRKLVKMEAYPPVAAWSAILAHMCQTNTG 206
Query: 145 TCLASNFLIQLCDVFLHLSAE---KSNGAEL-IKPDTMIFNLVLHACVRFGSSLKGQHIM 200
L ++ +++L +F + + KSN L +KP++ FN+VL A + FG++ K + ++
Sbjct: 207 AFLGADLVMELGYLFQNNRVDPRKKSNRPLLSMKPNSFTFNIVLTASLVFGTTRKAEQLL 266
Query: 201 ELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLH 260
ELM + GV + + +I++A I+E N +RDE++K K ++D+ ++QFY+ LLS H
Sbjct: 267 ELMPRIGVKPEVNLLIVMAHIYERNGRRDEIQKLKRHVDEACGLSESEFRQFYDCLLSCH 326
Query: 261 FKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNL-----------RCGL 309
KF D+D A +++LDM R + N K +A K L ++ + + C
Sbjct: 327 LKFGDLDHAVDMVLDMLRKGK---NAKRSLEAAKAVLEAVENRKVYFPYEKTDAENPCSS 383
Query: 310 KLQIM--PELLEKDSILKME-GKQELVLFRNGKL-------------LHSNRAM-AKLIN 352
Q++ L+ +S + E +ELV KL LH M AKL+
Sbjct: 384 NSQMLSYASFLKDNSFARFELHARELVRLLTDKLQEQVGLVKSEHGILHPTETMYAKLVK 443
Query: 353 GYKKHGKNSELSWLLLSIKKEHHSFG-ESTLCSDVIDALIQLGFLEAAHDILDDMELAGH 411
+ + K S L L+ KE ES+ VI+A I LG LE AHD+LD+M +G
Sbjct: 444 AFLEADKISALVSFLVKASKEDSPVSVESSFVVQVINACISLGLLEQAHDLLDEMRFSGI 503
Query: 412 PMDSTTYKSLLTAYYKVKMFR-EAEALLKQMRKSCLVQNLSC-EMVVSER---------- 459
+ S+ Y SLL AY K + ALLK +++ + + SC E ++ R
Sbjct: 504 RVGSSIYSSLLKAYCKEGQHEDDITALLKDAQQAGIQLDASCYEDLIQSRANHSNTTGAL 563
Query: 460 --FSEVADKS---ASFTDTSSLMDKSDLAES-----LIQEMREEAALS-TIYKLNSSIYF 508
F E+ + + A + L+ SD E+ L++E+R + +++ N+ I+F
Sbjct: 564 HLFKELKNLNVLKAGHKEFQRLVQGSDDNEAALMTKLVEEVRSGDIVDHAVHEWNNVIHF 623
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL-EMYRDITILWGDIKRNIESG 567
FCK +++ DA + +M+ P +TF+ L+ ++++ Y ++T LWG++K S
Sbjct: 624 FCKKRLMHDAHRALNKMRASGHVPNAQTFHSLITAYAAIGGKYVEVTDLWGEMKLLASSS 683
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLK 627
+ ++L ++LL F++GG+F R MEVI M+K+ M++DK YKS +LK+H+ LY+ K
Sbjct: 684 SMKFDQELLDSLLYCFVRGGFFLRAMEVIDMMEKREMFIDKYKYKSLWLKYHRTLYKG-K 742
Query: 628 VSNARTEAQSKRLVNVQAFRKWAGI 652
+TEAQ KR F+KW G+
Sbjct: 743 APKVQTEAQLKRREAAIHFKKWIGL 767
>gi|413934189|gb|AFW68740.1| hypothetical protein ZEAMMB73_971808 [Zea mays]
Length = 768
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 205/688 (29%), Positives = 352/688 (51%), Gaps = 61/688 (8%)
Query: 22 LLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVL 81
L ++E+A + +AW + + G+P + V+++ IT L S + HWL+++ ++V
Sbjct: 84 LAMEIENAIDQQRFDDAWRAYEKHVHMDGLPRKSVLSKLITGLAESCDHHWLKQSYNVVS 143
Query: 82 KIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKT 141
+ K +LL + L LSL LA +P A ++R ++ E P + HM +T
Sbjct: 144 HAFEEKQELLDKEPLIYLSLILAHCALPNLALNVVRKLVKMEAYPPVAAWSAILAHMCQT 203
Query: 142 EIGTCLASNFLIQLCDVFLHLSAE---KSNGAEL-IKPDTMIFNLVLHACVRFGSSLKGQ 197
G L ++ +++L +F + + KSN L +KP++ FN+VL A + FG++ K +
Sbjct: 204 NTGAFLGADLVMELGYLFQNNRVDPRKKSNRPLLSMKPNSFTFNIVLTASLVFGTTRKAE 263
Query: 198 HIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLL 257
++ELM + GV + + +I++A I+E N +RDE++K K ++D+ +QFY+ LL
Sbjct: 264 QLLELMPRIGVKPEVNLLIVMAHIYERNGRRDEIRKLKRHVDEAYGLSESEVRQFYDCLL 323
Query: 258 SLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQK-------------PYLISIGSPN 304
S H KF D D A +++LDM R + N K +A K PY +
Sbjct: 324 SCHLKFGDFDYAVDMVLDMIRKGK---NAKRSLEAAKAVLEAVENRKFYFPYEKADAENP 380
Query: 305 LRCGLKLQIMPELLEKDSILKME-GKQELVLFRNGKL-------------LHSNRAM-AK 349
C ++ + +S ++E +E V KL LH M AK
Sbjct: 381 RSCSSQMLSHASFFKDNSFGRLELDARESVRLLTDKLQEQVGLVKSEHGILHPTETMYAK 440
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG-ESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
L+ + + K S L+ L+ KE ES+ VI+A I LG LE AHD+LD+M
Sbjct: 441 LVKAFLEADKISALASFLVKASKEDSPVSVESSFVVQVINACISLGLLEQAHDLLDEMRF 500
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFRE-AEALLKQMRKSCLVQNLSC-EMVVSER------- 459
+G + S+ Y SLL AY K + ALLK +++ + + SC E ++ R
Sbjct: 501 SGIRVGSSIYSSLLKAYCKEGQHEDDITALLKDAQQAGIQLDSSCYEDLIQSRVNHSNTT 560
Query: 460 -----FSEVADKS---ASFTDTSSLMDKSDLAES-----LIQEMREEAALS-TIYKLNSS 505
F E+ + + A + ++ SD E+ L++E+R + + +++ N+
Sbjct: 561 GALHLFKELKNLNVLKAGHMEFQRIVQGSDDNEAALMTKLVEEVRSDHTVDHAVHEWNNV 620
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE-MYRDITILWGDIKRNI 564
I+FFCK +++ DA + +M+ P +TF+ L+ ++++ Y ++T LWG++K
Sbjct: 621 IHFFCKKRLMHDAHRALNKMRASGHVPNAQTFHSLITAYAAIGGKYVEVTDLWGEMKLLA 680
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYR 624
+ ++L ++LL F++GG+F R MEVI M+K+ M++DK YKS +LK+H+ LY+
Sbjct: 681 SLSSMKFDQELLDSLLYCFVRGGFFLRAMEVIEMMEKREMFIDKYKYKSLWLKYHRTLYK 740
Query: 625 RLKVSNARTEAQSKRLVNVQAFRKWAGI 652
K +TEAQ KR F+KW G+
Sbjct: 741 G-KAPKVQTEAQLKRREAAIRFKKWIGL 767
>gi|222612848|gb|EEE50980.1| hypothetical protein OsJ_31564 [Oryza sativa Japonica Group]
Length = 800
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 196/664 (29%), Positives = 346/664 (52%), Gaps = 60/664 (9%)
Query: 21 VLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLV 80
+L ++E+A + +AW + + G+P + V+++ IT + + HWL ++ ++V
Sbjct: 88 LLALEIENAIDQQRFDDAWRAYEKHIHMDGVPRKSVLSKLITGFAETCDAHWLNQSYNVV 147
Query: 81 LKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVK 140
+ K+ LL+ + L LSL+LAR+ +P + ++R ++ E P + HM +
Sbjct: 148 NHAFEEKSKLLEKEPLIFLSLALARSSLPNLSINVVRKLIKMEAYPPVAAWSAIVAHMCQ 207
Query: 141 TEIGTCLASNFLIQLCDVFLHLSAE---KSNGAELI-KPDTMIFNLVLHACVRFGSSLKG 196
T G LA++ ++++ +F + + KSN L+ KP+++ FN++L A + FG++ K
Sbjct: 208 TATGAFLAADMVMEIGYLFQNNRVDPRKKSNRPLLLMKPNSLTFNIILTASLLFGTTKKA 267
Query: 197 QHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESL 256
+ ++ELM + G+ D S+I++A+I+E N RDE++K + ++++ +QFY+ L
Sbjct: 268 EQLLELMPRIGLKPDVSSLIVMARIYEQNGHRDEIQKLRRHVNEACGLSESELRQFYDCL 327
Query: 257 LSLHFKFDDIDAAGELILDM-----NRYR---------EPLPNPKLRQDAQKPYLISIGS 302
LS H KF D+D+A ++ILDM N R E + N K+ +K ++ GS
Sbjct: 328 LSCHLKFGDLDSAVDMILDMLKKGKNTKRSLEAAKAVLEAVENNKIYLPYEKTKPVNSGS 387
Query: 303 PNLRCGLKLQIMPEL------------LEKDSIL-----KMEGKQELVLFRNGKLLHSNR 345
N Q++ + L+ +L K++ + LV G L +
Sbjct: 388 SNKSVCTDSQMLNYISFFKDKSFARLELDARELLKLLSDKLQEQVGLVKSEYGILYPTET 447
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG-ESTLCSDVIDALIQLGFLEAAHDILD 404
AKL+ + + K S L+ L+ KE ES+ VI+A I LG+LE AHD+LD
Sbjct: 448 MYAKLVKAFLEANKISALASFLVKASKEDSPVSVESSFVVQVINACISLGWLEQAHDLLD 507
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFR-EAEALLKQMRKSCLVQNLSC-EMVVSERFSE 462
+M +G + ST Y SLL AY K + ALLK +++ + + SC E ++ R
Sbjct: 508 EMRFSGIRVGSTIYSSLLKAYCKEGHHEDDIAALLKDAQQAGIQLDPSCYEDLIQSRAHH 567
Query: 463 VADKSA--SFTDTSSL------------------MDKSDLAESLIQEMREEAALS-TIYK 501
A F + SL + + L L++E+R ++ I+
Sbjct: 568 NNTTGALNLFKELKSLNILKAGQNEFEMLVQGCNNNGAALTTKLVEEVRSGHPVNHAIHD 627
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL-EMYRDITILWGDI 560
N+ I+FFCK +++ DA K +M+ + P +TF+ LV G++++ Y ++T LWG++
Sbjct: 628 WNNVIHFFCKKRLMHDAHKALGKMKALGHTPNAQTFHSLVTGYAAVGGKYVEVTDLWGEM 687
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
K S + ++L ++LL F++GG+F R MEVI M+K M++DK YKS +LK+H+
Sbjct: 688 KVLATSSSMNFDQELLDSLLYCFVRGGFFLRAMEVIEMMEKGKMFIDKYKYKSLWLKYHR 747
Query: 621 HLYR 624
LY+
Sbjct: 748 TLYK 751
>gi|218184544|gb|EEC66971.1| hypothetical protein OsI_33631 [Oryza sativa Indica Group]
Length = 800
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 196/664 (29%), Positives = 346/664 (52%), Gaps = 60/664 (9%)
Query: 21 VLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLV 80
+L ++E+A + +AW + + G+P + V+++ IT + + HWL ++ ++V
Sbjct: 88 LLALEIENAIDQQRFDDAWRAYEKHIHMDGVPRKSVLSKLITGFAETCDAHWLNQSYNVV 147
Query: 81 LKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVK 140
+ K+ LL+ + L LSL+LAR+ +P + ++R ++ E P + HM +
Sbjct: 148 NHAFEEKSKLLEKEPLIFLSLALARSSLPNLSINVVRKLIKMEAYPPVAAWSAIVAHMCQ 207
Query: 141 TEIGTCLASNFLIQLCDVFLHLSAE---KSNGAELI-KPDTMIFNLVLHACVRFGSSLKG 196
T G LA++ ++++ +F + + KSN L+ KP+++ FN++L A + FG++ K
Sbjct: 208 TATGAFLAADMVMEIGYLFQNNRVDPRKKSNRPLLLMKPNSLTFNIILTASLLFGTTKKA 267
Query: 197 QHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESL 256
+ ++ELM + G+ D S+I++A+I+E N RDE++K + ++++ +QFY+ L
Sbjct: 268 EQLLELMPRIGLKPDVSSLIVMARIYEQNGHRDEIQKLRRHVNEACGLSESELRQFYDCL 327
Query: 257 LSLHFKFDDIDAAGELILDM-----NRYR---------EPLPNPKLRQDAQKPYLISIGS 302
LS H KF D+D+A ++ILDM N R E + N K+ +K ++ GS
Sbjct: 328 LSCHLKFGDLDSAVDMILDMLKKGKNTKRSLEAAKAVLEAVENNKIYLPYEKTKPVNSGS 387
Query: 303 PNLRCGLKLQIMPEL------------LEKDSIL-----KMEGKQELVLFRNGKLLHSNR 345
N Q++ + L+ +L K++ + LV G L +
Sbjct: 388 SNKSVCTDSQMLNYISFFKDKSFARLELDARELLKLLSDKLQEQVGLVKSEYGILYPTET 447
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG-ESTLCSDVIDALIQLGFLEAAHDILD 404
AKL+ + + K S L+ L+ KE ES+ VI+A I LG+LE AHD+LD
Sbjct: 448 MYAKLVKAFLEANKISALASFLVKASKEDSPVSVESSFVVQVINACISLGWLEQAHDLLD 507
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFR-EAEALLKQMRKSCLVQNLSC-EMVVSERFSE 462
+M +G + ST Y SLL AY K + ALLK +++ + + SC E ++ R
Sbjct: 508 EMRFSGIRVGSTIYSSLLKAYCKEGHHEDDIAALLKDAQQAGIQLDPSCYEDLIQSRAHH 567
Query: 463 VADKSA--SFTDTSSL------------------MDKSDLAESLIQEMREEAALS-TIYK 501
A F + SL + + L L++E+R ++ I+
Sbjct: 568 NNTTGALNLFKELKSLNILKAGQNEFEMLVQGCNNNGAALTTKLVEEVRSGHPVNHAIHD 627
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL-EMYRDITILWGDI 560
N+ I+FFCK +++ DA K +M+ + P +TF+ LV G++++ Y ++T LWG++
Sbjct: 628 WNNVIHFFCKKRLMHDAHKALGKMKALGHTPNAQTFHSLVTGYAAVGGKYVEVTDLWGEM 687
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
K S + ++L ++LL F++GG+F R MEVI M+K M++DK YKS +LK+H+
Sbjct: 688 KVLATSSSMNFDQELLDSLLYCFVRGGFFLRAMEVIEMMEKGKMFIDKYKYKSLWLKYHR 747
Query: 621 HLYR 624
LY+
Sbjct: 748 TLYK 751
>gi|326516602|dbj|BAJ92456.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 775
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 205/719 (28%), Positives = 357/719 (49%), Gaps = 78/719 (10%)
Query: 1 CFCSSSVQQEKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRF 60
CF +++ E + + +L ++E+A + +AW + + G+P + V+++
Sbjct: 67 CFSTAT---ETVLVQARDPSLLASEIEAAIDQQRFDDAWRAYEKHLHMDGLPRKSVLSKL 123
Query: 61 ITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLML 120
IT + + H L ++ +V + + +LL+ + L LSL LAR +P A ++R ++
Sbjct: 124 ITGFAATCDAHRLNQSYSVVNHTFRERPELLEKEALIYLSLVLARYALPDLAVNVVRKLV 183
Query: 121 GRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAE---KSNGAEL-IKPD 176
E P V HM +T G+ LA++ ++++ +F + + KSN L +KP+
Sbjct: 184 KIEAYPPVAAWSAVIAHMCQTATGSFLAADMVMEIGYLFQNNRVDPRKKSNRPLLAMKPN 243
Query: 177 TMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKC 236
+ FN+VL A + FG++ K + ++ELM + GV +A ++++A+I+E N +DE+ K K
Sbjct: 244 SFTFNIVLTASLLFGTTKKAEQLLELMPRIGVKPEASLLVVMARIYEKNGHKDEIHKLKR 303
Query: 237 YIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDM----NRYREPLPNPKLRQDA 292
++D+ ++Q+Y+ LLS H KF D+D+A +++LDM N + L K +A
Sbjct: 304 HVDEACGLSESEFRQYYDCLLSCHLKFGDLDSAVDMVLDMLKKGNNAKRSLEAAKAVLEA 363
Query: 293 ---------------------QKPYLISIGSPNLRCGLKLQIMPEL-LEKDSILKM---- 326
KP N K + L LE +LK+
Sbjct: 364 VESNKIYLPCQKADPENSGFLNKPVSTDHQMLNYASFFKDKSFARLELEARELLKLLSDK 423
Query: 327 -EGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG-ESTLCS 384
+G+ LV +G L + AKL+ + + K S L+ L+ KE ES+
Sbjct: 424 LQGQVGLVKSEHGVLHPTETTYAKLVKTFLEADKISALASFLVKASKEDSPVSVESSFVV 483
Query: 385 DVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE-AEALLKQMRK 443
VI+A I LG LE AHD+LD+M +G + S+ Y SLL AY K + ALLK ++
Sbjct: 484 QVINACISLGLLEQAHDLLDEMRFSGVRVGSSIYSSLLKAYCKEGNHEDDITALLKDAQQ 543
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSL------MDKSDLAESLIQEM------- 490
+ + + SC + ++ A +T+ M S++ +S+ +E
Sbjct: 544 AGIQLDSSC-------YEDLIKSRAHHNNTTGALHLFKEMKSSNIKKSVNREFEMLVQSC 596
Query: 491 -REEAALST---------------IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
EAAL+ I+ N+ I+FFCK +++ DA K +M+ + P
Sbjct: 597 DNNEAALTAKLVEEVKSGHTVNHAIHDWNNVIHFFCKKRLMHDAHKALSKMRVLGHTPNA 656
Query: 535 ETFYYLVYGHSSLE-MYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVM 593
+TF+ LV ++++ Y ++T LWG++K S + ++L ++LL F++GG+F R M
Sbjct: 657 QTFHSLVTAYAAVGGKYVEVTDLWGEMKVLANSNSMKFDQELLDSLLYCFVRGGFFLRAM 716
Query: 594 EVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
EVI M+ +++DK YKS +LK+H+ LY+ K +TEAQ R F+KW G+
Sbjct: 717 EVIELMESSKLFIDKYKYKSLWLKYHRTLYKG-KAPKVQTEAQLIRREAALRFKKWIGL 774
>gi|357140479|ref|XP_003571794.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
mitochondrial-like [Brachypodium distachyon]
Length = 806
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 209/714 (29%), Positives = 366/714 (51%), Gaps = 70/714 (9%)
Query: 3 CSSSVQQEKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFIT 62
C S+ Q L S ++ L ++E+A + +AW + + G+P + V+++ IT
Sbjct: 98 CFSTTAQTVLVQARDSSQLAL-EIENAIDQQRFDDAWRAYEKHVHMDGLPRKSVLSKLIT 156
Query: 63 DLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGR 122
+ + H L ++ ++V + K +LL+ + L LSL+LA+ +P A ++R ++
Sbjct: 157 GFAVTRDVHRLNQSYNVVDHAFEEKHELLEKEPLIYLSLTLAQCALPNLAVNVVRKLVKM 216
Query: 123 ENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAE---KSNGAEL-IKPDTM 178
E P + HM +T G LA++ ++++ +F + + KSN L +KP++
Sbjct: 217 EAYPPVAAWSGIIAHMCQTANGAFLAADMVMEIGYLFQNNRVDPRKKSNRPLLSMKPNSF 276
Query: 179 IFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYI 238
FN+VL A + FG++ K + ++ELM + GV D +I++A+I+E N +DE+ K K ++
Sbjct: 277 TFNIVLTASLLFGTTKKAEQLLELMPRIGVKPDVSLLIVMARIYEKNGHKDEIVKLKRHV 336
Query: 239 DQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLI 298
D+ +QQFY+ LLS H KF D+D+A +++LDM R + N K +A K L
Sbjct: 337 DEACGLSELEFQQFYDCLLSCHLKFGDLDSAVDMVLDMLRKGK---NAKRSLEAAKAVLE 393
Query: 299 SI-----------------GSPNLRCGLKLQIMPEL------------LEKDSIL----- 324
++ GSPN Q+ + L+ +L
Sbjct: 394 AVESSKIYLPFEKSDPENSGSPNKSVSANGQMRSYVSFFKDKSFARLELDARGLLNLLSD 453
Query: 325 KMEGKQELVLFRNGKLLHSNRAM-AKLINGYKKHGKNSELSWLLLSIKKEHHSFG-ESTL 382
K++ + LV +G +LH M AKL+ + + K S L+ L+ KE ES+
Sbjct: 454 KLQDQVGLVKSEHG-ILHPTETMYAKLVKAFLEADKISALASFLVKASKEDSPVSVESSF 512
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE-AEALLKQM 441
VI+A I +G LE AHD+LD+M +G + S+ Y SLL AY K + ALLK
Sbjct: 513 VVQVINACISVGLLEQAHDLLDEMRFSGIKVGSSIYSSLLKAYCKEGHHEDDITALLKDA 572
Query: 442 RKSCLVQNLSC-EMVVSER------------FSEVADKS---ASFTDTSSLMDKSDLAES 485
+++ + + SC E ++ R F E+ + + + L+ D +E+
Sbjct: 573 QQAGIQLDSSCYEDLIQSRVHHKNTAGALHLFKEMRNSKVVKSGHREFEMLVQSCDNSEA 632
Query: 486 -----LIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
L++E++ ++ I+ N+ I+FFCK +++ DA K +M+ + P +TF+
Sbjct: 633 ALTTKLVEEVKSGHTVNHAIHDWNNVIHFFCKKRLMHDAHKALSKMRVLGHTPNAQTFHS 692
Query: 540 LVYGHSSLE-MYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGY 598
LV ++++ Y ++T LWG++K S + ++L ++LL F++GG+F R MEVI
Sbjct: 693 LVTAYAAIGGKYVEVTDLWGEMKVLANSNSMKFDQELLDSLLYCFVRGGFFLRAMEVIEM 752
Query: 599 MKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
M+K M++DK YKS +LK+H+ +Y+ K +TEAQ R F++W G+
Sbjct: 753 MEKCKMFIDKYKYKSLWLKYHRTMYKG-KAPKVQTEAQLIRREAALQFKRWIGL 805
>gi|242077462|ref|XP_002448667.1| hypothetical protein SORBIDRAFT_06g031150 [Sorghum bicolor]
gi|241939850|gb|EES12995.1| hypothetical protein SORBIDRAFT_06g031150 [Sorghum bicolor]
Length = 257
Score = 198 bits (503), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 117/262 (44%), Positives = 167/262 (63%), Gaps = 8/262 (3%)
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK--SCLVQNL 450
+G+L +AHDI+DD+E AG P+ T Y SLL AY K E LL+Q++K S +
Sbjct: 1 MGWLHSAHDIIDDLESAGIPVGITGYISLLRAYEKENKSEEFNCLLQQIQKIASTMDDIH 60
Query: 451 SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFC 510
+ + ++V + +S +D I+ + E L+ + N+S+ FFC
Sbjct: 61 TNSPFTIKNIAKVVKYEIPLSSSSLFAALADE----IKHYKPEEHLTL--EFNNSVLFFC 114
Query: 511 KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLA 570
K KM+ DAL Y+RM+E IRPT TF +++ G+SS++M+R+IT+LWG+IKR +E G L
Sbjct: 115 KAKMMEDALCTYKRMREQNIRPTSHTFCHILRGYSSMDMHREITMLWGEIKRRLEYGELD 174
Query: 571 VSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSN 630
+ RDL + L+LNFL+GGYF RVME+I YM K N+Y DK Y+ FLK HK+LYR L +
Sbjct: 175 LDRDLLDCLVLNFLKGGYFSRVMEIISYMSKHNIYCDKWKYRHAFLKLHKNLYRNLNSLH 234
Query: 631 ARTEAQSKRLVNVQAFRKWAGI 652
+TEAQSKR+ +V+AFR WA I
Sbjct: 235 DKTEAQSKRIEDVRAFRLWASI 256
>gi|413919768|gb|AFW59700.1| hypothetical protein ZEAMMB73_261613 [Zea mays]
Length = 216
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 112/153 (73%)
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
+LN+S+ FFCK KM+ D + + M+E IRPT TF +++ G+SS++M+R++T+LWG+I
Sbjct: 64 ELNNSVLFFCKAKMMEDVVCTCKCMREQNIRPTSHTFCHMLCGYSSMDMHREVTMLWGEI 123
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
KR E G L + RDL ++L+LNFL+GGYF RVME+I YM K N+Y DK Y FLK HK
Sbjct: 124 KRRHEYGELDLFRDLLDSLVLNFLKGGYFPRVMEIISYMSKHNIYCDKWKYGCAFLKLHK 183
Query: 621 HLYRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
+LY L + +TEAQSKR+ +V+AFR WA I+
Sbjct: 184 NLYMNLNSLHDKTEAQSKRIEDVRAFRLWASIN 216
>gi|168036356|ref|XP_001770673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678034|gb|EDQ64497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 717
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 146/668 (21%), Positives = 283/668 (42%), Gaps = 81/668 (12%)
Query: 16 GSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQK 75
G L+ ++ K + EAW+ R P+R +R + L + P L +
Sbjct: 86 GDDDANLIEEMRDLLKQRRTDEAWQVMQLLSRSGKFPDRQCTSRLVAQLSHRGVPSCLAR 145
Query: 76 ACDLVLKIQKG-KADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLV 134
A ++ ++K + DLL D L L+L+ AR+ A +L LM + P + V
Sbjct: 146 AQQVLTNLRKNNQVDLLDSDSLGLLALASARSGAARYALNVLNLMFEMDIYPSVKVWSAV 205
Query: 135 FVHMVKTEIGTCLASNFLIQLCDVFLHLSAE-KSNGAEL--IKPDTMIFNLVLHACVRFG 191
V + + CL ++L D L E +S G ++ +PDT FN L+AC G
Sbjct: 206 -VSRLGRHVDDCL---LALELFDEVCRLIEEAESQGIDVRSARPDTGAFNAALNACATLG 261
Query: 192 SSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQ 251
+ KG+ +M M + G+ D+ + L +++ C D+ K K D++ +
Sbjct: 262 FAAKGEDLMNSMRRCGLQPDSITFNTLIKLY-AKC--DQRKLLKSLPDEMVENKVMPDES 318
Query: 252 FYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKL 311
SL++ + D+ A L+ + E + K + S +LR
Sbjct: 319 TVNSLIAGYVGLGDLREAEALLRRLQDKSEQGNDSKTKSK-------SWWGAHLR----- 366
Query: 312 QIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIK 371
P++ R L+ GY + G+ S+ LL+++
Sbjct: 367 ---PDV---------------------------RTYTTLMKGYVQKGRRSDAMRTLLAMQ 396
Query: 372 --KEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVK 429
K+ S + I + ++LG ++ A +L +M P++ TY LL Y +
Sbjct: 397 MDKDPRSSPNEVSYTTAISSCVRLGLMDEATVVLQEMLKHNIPVNVITYNILLKGYCSAR 456
Query: 430 MFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLI-- 487
++A +++K M ++ + ++ + E D +A+ D M ++ ++ S +
Sbjct: 457 KLQKAHSVVKDMEEAGVALDVVSYNTLINGCIETGDNAAAL-DYFKKMRETGISPSAVSY 515
Query: 488 --------------------QEMREEAALST-IYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+EMR + + T N + +C+ + DA +++ +M+
Sbjct: 516 TTLMKAFGRNGQPKQVHLVFEEMRNDPRMKTDAVAWNVLLDSYCRNGRVADAKRMFLQMK 575
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD--LYETLLLNFL 584
E ++ PT T+ LV G++ M ++ +LW +IK + V + D L L+ +
Sbjct: 576 EDRVLPTAFTYATLVKGYALGGMLGEVLVLWKEIKERTDDEVNPLQPDEVLLNCLVDTCV 635
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQ 644
+ GYF++ +EV+ M+++ + +K YK F++ + +LY S R + ++ V+
Sbjct: 636 RAGYFQKALEVVACMEEKGIPANKTKYKRIFIELYSNLYTGKHASQRRRDRSEEKRDAVE 695
Query: 645 AFRKWAGI 652
AF+ W G+
Sbjct: 696 AFKFWLGL 703
>gi|225423470|ref|XP_002274151.1| PREDICTED: pentatricopeptide repeat-containing protein At1g69290
[Vitis vinifera]
Length = 655
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 147/670 (21%), Positives = 283/670 (42%), Gaps = 103/670 (15%)
Query: 15 EGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQ 74
+ + E L L ++ + EAW++F P + + N I L + + L+
Sbjct: 57 QSPAPEDLESALHTSLSTNNTDEAWKSFKALTTNSTFPSKSLANSLIAHLASLHDLYNLK 116
Query: 75 KACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLML-GRENLPCSDLLLL 133
+A + + + LL + L S+ A PA ++ M R +P S +
Sbjct: 117 RAFASAVFLLEKNPSLLDFGTVRTLLGSMNSANTAAPAFALINCMFKNRYFMPFS-MWGG 175
Query: 134 VFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVR-FGS 192
V V + + + C + + EK E +KPD N+ L C + S
Sbjct: 176 VIVEITRRNRSFVAFLRVFNETCRIAID---EK---LESMKPDLDACNVALEGCSQDLES 229
Query: 193 SLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQ- 251
+ + ++E+MS G+ D S LA ++ + +++ + ++ L F ++
Sbjct: 230 VSEAEKVVEMMSVLGIQPDESSFGFLAYLYALKGLEEKIVE----LEGLMRGFGFSSKKV 285
Query: 252 FYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKL 311
Y L++ + K +++ I LR+D ++ PN
Sbjct: 286 IYSYLINAYVKSGNLEYVSRTIFR-----------SLREDDEQ-------GPNF------ 321
Query: 312 QIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIK 371
S +++ G+ ++G +L+ L++ +
Sbjct: 322 -------------------------------SEETYCEVVKGFLQNGSIKDLASLIIETQ 350
Query: 372 K-EHHSFG-ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVK 429
K E S + ++ +I A + LGFL+ AH ILD+M + G + Y S+L A+ K
Sbjct: 351 KLEPSSIAVDRSIGYGIISACVSLGFLDKAHSILDEMNVQGVSVGLGVYVSILKAFCKEH 410
Query: 430 MFREAEALLKQMRK-----------SCLVQNLSCEMVVSE-------RFSEVADKSASF- 470
EA L+ ++ + + ++S + S R + V D S+
Sbjct: 411 RTAEAAQLVTEISSLGLQLDAGSYDALIEASMSSQDFQSAFSLFRDMREARVPDMKGSYL 470
Query: 471 TDTSSLMD--KSDLAESLIQEMREEAALST-IYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
T + L + + +L + + E+ E+ + + NS I+ FCK + DA + +RRM
Sbjct: 471 TMMTGLTENHRPELMAAFLDEIVEDPRVEVGTHDWNSIIHAFCKVGRLEDARRTFRRMIF 530
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI----ESGVLAVSRDLYETLLLNF 583
++ P +T+ L+ G++S E Y + +LW ++KR I E GV +L + L
Sbjct: 531 LQFEPNDQTYLSLINGYASAEKYFSVLMLWNEVKRRISIDGEKGV-KFDHNLVDAFLYAL 589
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNV 643
++GG+F+ VM+V+ ++ ++VDK YK F++ HK +LKV+ R +++ +
Sbjct: 590 VKGGFFDAVMQVVEKSQEMKIFVDKWRYKQAFMEVHK----KLKVAKVRKR-NFRKMEAL 644
Query: 644 QAFRKWAGID 653
AF+ WAG++
Sbjct: 645 IAFKNWAGLN 654
>gi|255542030|ref|XP_002512079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549259|gb|EEF50748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 650
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 142/656 (21%), Positives = 269/656 (41%), Gaps = 110/656 (16%)
Query: 33 HQVGEAWETFNDFQRLHG-IPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLL 91
+ +AW++F P + + N IT L + L++A V+ + L
Sbjct: 69 NDTDQAWKSFKFLTSNSSYFPSKSLANSLITHLSSLQDTLNLKRAFASVIFFMEKNPQSL 128
Query: 92 QLDLLAKLSLSLARAQMPVPASMILRLMLG-RENLPCSDLLLLVFVHMVKTEIGTCLASN 150
+ + + S+ A PA +++ M R +P H+ IG N
Sbjct: 129 DFETVQSVLESMKFANSAAPAFALVKCMFKHRYFMP---------FHLWGGLIGHISKKN 179
Query: 151 FLIQLCDVFLHLSAEKSNGA-----ELIKPDTMIFNLVLHACVRFGSSLK-GQHIMELMS 204
+ FL + E A + +KPD NL L C S+ +++E+MS
Sbjct: 180 GMFV---AFLKVFEESYRIAVDEKLDFMKPDLGACNLALECCCEEIESVSDADNVIEIMS 236
Query: 205 QTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFD 264
G+ D S LA ++ + +D + + K ++ S + + FY +L+ + K
Sbjct: 237 VLGIKPDEMSFGFLAYLYALKGLQDRIVELKSLMEGFSVL---NKRLFYSNLIRGYVKSG 293
Query: 265 DIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSIL 324
++++ I+ LR++ +K Y I+
Sbjct: 294 NLESVSATII-----------CSLREEDEKNYNIN------------------------- 317
Query: 325 KMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKK-EHHSFG-ESTL 382
+++ G+ K G L+ L++ +K E S + ++
Sbjct: 318 -------------------EETYCEVVKGFLKDGSLKGLANLIIEARKLEPDSIEIDKSI 358
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
VI+A + LG + AH ILD+M+ G + Y +L AY K EA L+ ++
Sbjct: 359 SFGVINACVNLGLSDKAHSILDEMDAKGGSVGFGVYVPILKAYCKEGRTAEATQLVMEIS 418
Query: 443 K----------SCLVQNLSCEMVVSERFSEVAD---------KSASFTDTSSLMD--KSD 481
L++ F+ D K + T + LM+ + +
Sbjct: 419 NLGLQLDAGSYDALIEASMTSQDFQSAFTLFRDMRESRSPDLKGSYLTIMTGLMENHRPE 478
Query: 482 LAESLIQEMREEAALST-IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
L + + E+ E+ + + NS I+ FCK + DA + +RRM ++ P +T+ L
Sbjct: 479 LMAAFLDEVVEDPRIEVKTHDWNSIIHAFCKAGRLEDAKRTFRRMIFLQFEPNDQTYLSL 538
Query: 541 VYGHSSLEMYRDITILWGDIKRNIESG---VLAVSRDLYETLLLNFLQGGYFERVMEVIG 597
+ G+ + E Y + +LW +IKR + + ++L + L ++GG+F+ VM+V+
Sbjct: 539 INGYVTAEKYFSVLMLWSEIKRRVSNDKEKSFKFDQNLVDAFLYALVKGGFFDAVMQVVE 598
Query: 598 YMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
++ ++VDK YK F++ HK +LKVS R + +++ + AF+ WAG++
Sbjct: 599 KSQEMKIFVDKWKYKQAFMETHK----KLKVSKLR-KRNFRKMEALIAFKNWAGLN 649
>gi|449434724|ref|XP_004135146.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g69290-like [Cucumis sativus]
gi|449517162|ref|XP_004165615.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g69290-like [Cucumis sativus]
Length = 656
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 166/332 (50%), Gaps = 33/332 (9%)
Query: 349 KLINGYKKHGKNSELSWLLLSIKK-EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+++ G+ + G ELS L++ + E S + ++ +I+A + +G+L+ A ILD+M
Sbjct: 330 EMVKGFIQSGNLKELSALIIDAQNLESSSAVDGSIGFGIINACVNIGWLDKAQYILDEMN 389
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL---VQNLSC------------ 452
G + Y +L AY K A L+ + S + +N
Sbjct: 390 SQGVSLGLGVYLPILKAYRKEHRTAAATQLIMDISSSGIQLDAENYDALIEASMSNQDFQ 449
Query: 453 ---EMVVSERFSEVADKSASF-TDTSSLMD--KSDLAESLIQEMREEAALST-IYKLNSS 505
+ S R + +D AS+ T + LM+ + +L + + E+ E+ + + NS
Sbjct: 450 SAFTLFRSMRETRKSDTKASYLTIMTGLMENHRPELMAAFLDEIVEDPLVEVGTHDWNSI 509
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK---- 561
I+ FCK + DA + YRRM+ ++ P +TF L+ G+ S E Y + +LW ++K
Sbjct: 510 IHAFCKAGRLEDARRTYRRMKFLQFEPNEQTFLSLINGYVSAERYFCVLMLWNELKWKVT 569
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKH 621
N ESG+ + +L + L ++GG+F+ VM+V+ K +++DK YK F++ HK
Sbjct: 570 PNGESGI-KLDNNLVDAFLYALVKGGFFDAVMQVVEKTKDTKIFIDKWKYKQAFMETHK- 627
Query: 622 LYRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
+LKV+ R K++ ++ AF+ WAG++
Sbjct: 628 ---KLKVAKLRRR-NYKKMESLIAFKNWAGLN 655
>gi|115440409|ref|NP_001044484.1| Os01g0788900 [Oryza sativa Japonica Group]
gi|20160827|dbj|BAB89767.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|20161191|dbj|BAB90118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534015|dbj|BAF06398.1| Os01g0788900 [Oryza sativa Japonica Group]
gi|215740585|dbj|BAG97241.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 670
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 137/567 (24%), Positives = 242/567 (42%), Gaps = 104/567 (18%)
Query: 118 LMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKS-NGAELIKPD 176
L GR LP + + + + + G +A FL + + +EKS + A ++PD
Sbjct: 176 LRCGR-RLPAFPVWGSPLIELTRADTGAFVA--FLKVFDEACKQMVSEKSPSAAAAMRPD 232
Query: 177 TMIFNLVLHACVRF-GSSLKGQHIMELMSQTGVVADAHSIIILAQIH---EMNCQRDELK 232
N VL C R GS + + ++E+MS V D S LA ++ ++ + DEL
Sbjct: 233 LAACNAVLGGCCRLLGSVTEAERVLEIMSAIAVSPDVDSFGCLAFLYAWRDIPSRVDEL- 291
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDA 292
D+L + F+++L+S + K ++ +IL + R
Sbjct: 292 ------DKLLDALGFGKKIFFKNLISGYLKSCSFESVSSVILRVVEERR----------- 334
Query: 293 QKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLIN 352
+G N L+ E+ ++ NG++ R +A+LI
Sbjct: 335 -------VGGSN---AFDLESYTEVAQR-------------FVDNGRI----RELAQLII 367
Query: 353 GYKKHGKNSELSWLLLSIKKEHH-SFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGH 411
K E L S+ E FG +++A ++LG L AH ILD+M G
Sbjct: 368 ------KAQETESLQQSLAVEDSVGFG-------IVNACVELGLLNKAHSILDEMTAQGA 414
Query: 412 PMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-------LSCEMVVSE------ 458
+ Y S+L AY K + EA L+ ++ + L + + M +
Sbjct: 415 SVGLGVYSSILKAYCKEQRTAEAAQLVSEISAAGLQLDAGSYDALIDASMTAHDFLSAFS 474
Query: 459 RFSEVADKSASFTDTSSLMDKSDLAE------------SLIQEMREEAALSTIYKLNSSI 506
F E+ + TS L + L E +++ + R E A + NS I
Sbjct: 475 LFKEMREARLPDLRTSYLTIMTGLTENNRPELMASFLDTVVDDPRIEIA---THDWNSII 531
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566
+ FCK + DA + YRRM ++ P +T+ L+ G+ S E Y + ILW +++R
Sbjct: 532 HAFCKVGRLEDARRTYRRMVFLRYEPNNQTYLSLINGYVSAEKYFSVLILWTEVRRKGAD 591
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRL 626
+ +L + L ++GG+F+ M+VI ++ +++DK +K F++ HK +L
Sbjct: 592 ----FNHELIDAFLYALVKGGFFDMAMQVIEKAQELKIFLDKWRHKQAFMETHK----KL 643
Query: 627 KVSNARTEAQSKRLVNVQAFRKWAGID 653
KV+ R +++ + AF+ WAG++
Sbjct: 644 KVAKLRKR-NFRKMEALIAFKNWAGLN 669
>gi|125572286|gb|EAZ13801.1| hypothetical protein OsJ_03724 [Oryza sativa Japonica Group]
Length = 670
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 137/567 (24%), Positives = 242/567 (42%), Gaps = 104/567 (18%)
Query: 118 LMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKS-NGAELIKPD 176
L GR LP + + + + + G +A FL + + +EKS + A ++PD
Sbjct: 176 LRCGR-RLPAFPVWGSPLIELTRADTGAFVA--FLKVFDEACKQMVSEKSPSAAAAMRPD 232
Query: 177 TMIFNLVLHACVRF-GSSLKGQHIMELMSQTGVVADAHSIIILAQIH---EMNCQRDELK 232
N VL C R GS + + ++E+MS V D S LA ++ ++ + DEL
Sbjct: 233 LAACNAVLGGCCRLLGSVTEAERVLEIMSAIAVSPDVDSFGCLAFLYAWRDIPSRVDEL- 291
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDA 292
D+L + F+++L+S + K ++ +IL + R
Sbjct: 292 ------DKLLDALGFGKKIFFKNLISGYLKSCSFESVSSVILRVVEERR----------- 334
Query: 293 QKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLIN 352
+G N L+ E+ ++ NG++ R +A+LI
Sbjct: 335 -------VGGSN---AFDLESYTEVAQR-------------FVDNGRI----RELAQLII 367
Query: 353 GYKKHGKNSELSWLLLSIKKEHH-SFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGH 411
K E L S+ E FG +++A ++LG L AH ILD+M G
Sbjct: 368 ------KAQETESLQQSLAVEDSVGFG-------IVNACVELGLLNKAHSILDEMTAQGA 414
Query: 412 PMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-------LSCEMVVSE------ 458
+ Y S+L AY K + EA L+ ++ + L + + M +
Sbjct: 415 SVGLGVYSSILKAYCKEQRTAEAAQLVSEISAAGLQLDAGSYDALIDASMTAHDFLSAFS 474
Query: 459 RFSEVADKSASFTDTSSLMDKSDLAE------------SLIQEMREEAALSTIYKLNSSI 506
F E+ + TS L + L E +++ + R E A + NS I
Sbjct: 475 LFKEMREARLPDLRTSYLTIMTGLTENNRPELMASFLDTVVDDPRIEIA---THDWNSII 531
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566
+ FCK + DA + YRRM ++ P +T+ L+ G+ S E Y + ILW +++R
Sbjct: 532 HAFCKVGRLEDARRTYRRMVFLRYEPNNQTYLSLINGYVSAEKYFSVLILWTEVRRKGAD 591
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRL 626
+ +L + L ++GG+F+ M+VI ++ +++DK +K F++ HK +L
Sbjct: 592 ----FNHELIDAFLYALVKGGFFDMAMQVIEKAQELKIFLDKWRHKQAFMETHK----KL 643
Query: 627 KVSNARTEAQSKRLVNVQAFRKWAGID 653
KV+ R +++ + AF+ WAG++
Sbjct: 644 KVAKLRKR-NFRKMEALIAFKNWAGLN 669
>gi|224098970|ref|XP_002311339.1| predicted protein [Populus trichocarpa]
gi|222851159|gb|EEE88706.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 138/657 (21%), Positives = 261/657 (39%), Gaps = 112/657 (17%)
Query: 32 NHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLL 91
+ EAW +F P + + N IT L + L++A ++ + + L
Sbjct: 74 TNNTNEAWASFKSLTSNSAFPSKSLTNSLITHLSSLNDTINLKRAFASIVYVIEKNPKSL 133
Query: 92 QLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNF 151
+ + S+ RA PA +++ M L + + + +
Sbjct: 134 DFETVQLFLGSMVRANTAAPAFALIKCMFKNRFFMPFRLWGDILIEISRKNDKVIAFLKV 193
Query: 152 LIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACV-RFGSSLKGQHIMELMSQTGVVA 210
+ C + + EK + +KPD N+ L C S + + ++E MS G+
Sbjct: 194 FEESCRIAID---EK---LDFMKPDMDACNVALEGCCCELESVSEAEKVIETMSVLGIKP 247
Query: 211 DAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQ-FYESLLSLHFKFDDIDAA 269
D S LA ++ + +D++ + ++ L + F ++ F+ L+ + K +A
Sbjct: 248 DELSFGFLAYLYALKGFQDKIIE----LNGLMSGFGFSNKKLFFSYLIRGYVKSGSFEAV 303
Query: 270 GELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGK 329
E IL LR+ GL L
Sbjct: 304 SETILR-----------SLREQG---------------GLDLNF---------------- 321
Query: 330 QELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD---- 385
S +++ G+ K G L+ L++ E +T+ +D
Sbjct: 322 -------------SEETYCQVVKGFMKDGGIKGLANLII----EAQKLESATIAADKSTG 364
Query: 386 --VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL------ 437
+I A + L + AH I+D+M+ G + + +L AY K +R AEA
Sbjct: 365 FGIISACVNLRLSDKAHSIVDEMDAQGGSVGLGVFLPILKAY--CKEYRTAEATQLVMDI 422
Query: 438 ------LKQMRKSCLVQNLSCEMVVSERFSEVAD--------KSASFTDTSSLMDK--SD 481
L + L++ F+ D K + T + LM+K +
Sbjct: 423 SNKGLQLDEGSYDALIEASMTSQDFQSAFTLFRDMREGIAELKGSYLTIMTGLMEKQRPE 482
Query: 482 LAESLIQEMREEAALST-IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
L + + E+ E+ + + NS I+ FCK + DA + +RRM ++ P +T+ L
Sbjct: 483 LMAAFLDEIVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTFRRMTFLQFEPNDQTYLSL 542
Query: 541 VYGHSSLEMYRDITILWGDIKRNI----ESGVLAVSRDLYETLLLNFLQGGYFERVMEVI 596
+ G+ + E Y + +LW ++KR + E G+ + L + L ++GG+F+ VM+V+
Sbjct: 543 INGYVTAEKYFGVLMLWNEVKRKVSPDKEKGI-KFDQSLVDAFLYAMVKGGFFDAVMQVV 601
Query: 597 GYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
++ ++VDK YK F++ HK +LKVS R + +++ + AF+ W G++
Sbjct: 602 EKSQEMKIFVDKWRYKQAFMESHK----KLKVSKLR-KRNFRKMEALIAFKNWVGLN 653
>gi|218189191|gb|EEC71618.1| hypothetical protein OsI_04035 [Oryza sativa Indica Group]
Length = 670
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 129/523 (24%), Positives = 226/523 (43%), Gaps = 101/523 (19%)
Query: 162 LSAEKS-NGAELIKPDTMIFNLVLHACVRF-GSSLKGQHIMELMSQTGVVADAHSIIILA 219
++ EKS + A ++PD N VL C R GS + + ++E+MS GV D S LA
Sbjct: 217 VAEEKSPSAAAAMRPDLAACNAVLGGCCRLLGSVTEAERVLEIMSVIGVSPDVDSFGCLA 276
Query: 220 QIH---EMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDM 276
++ ++ + DEL D+L + F+++L+S + K ++ +IL +
Sbjct: 277 FLYAWRDIPSRVDEL-------DKLLDALGFSKKIFFKNLISGYLKSCSFESVSSVILRV 329
Query: 277 NRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFR 336
R +G N L+ E+ +
Sbjct: 330 LEERR------------------VGDSN---AFDLESYTEVAQ-------------CFVD 355
Query: 337 NGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHH-SFGESTLCSDVIDALIQLGF 395
NG++ R +A+LI K E L S+ E FG +++A ++LG
Sbjct: 356 NGRI----RELAQLII------KAQETESLQQSLAVEDSVGFG-------IVNACVELGL 398
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------ 449
L AH ILD+M G + Y S+L AY K + EA L+ ++ + L +
Sbjct: 399 LNKAHSILDEMTAQGASVGLGVYSSILKAYCKEQRTAEAAQLVSEISAAGLQLDAGSYDA 458
Query: 450 -LSCEMVVSE------RFSEVADKSASFTDTSSLMDKSDLAE------------SLIQEM 490
+ M + F E+ + TS L + L E +++ +
Sbjct: 459 LIDASMTAHDFLSAFSLFKEMREARLPDLRTSYLTIMTGLTENNRPELMASFLDTVVDDP 518
Query: 491 REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMY 550
R E A + NS I+ FCK + DA + YRRM ++ P +T+ L+ G+ S E Y
Sbjct: 519 RIEIA---THDWNSIIHAFCKVGRLEDARRTYRRMVFLRYEPNNQTYLSLINGYVSAEKY 575
Query: 551 RDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLM 610
+ ILW +++R + +L + L ++GG+F+ M+VI ++ +++DK
Sbjct: 576 FSVLILWTEVRRKGAD----FNHELIDAFLYALVKGGFFDMAMQVIEKAQELKIFLDKWR 631
Query: 611 YKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
+K F++ HK +LKV+ R +++ + AF+ WAG++
Sbjct: 632 HKQAFMETHK----KLKVAKLRKR-NFRKMEALIAFKNWAGLN 669
>gi|357487645|ref|XP_003614110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515445|gb|AES97068.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 664
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 147/293 (50%), Gaps = 30/293 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+++A + +G + AH+ILD+M G + Y +L AY K EA L+ ++ S
Sbjct: 376 IVNACVSIGLSDKAHNILDEMNALGGSVGLGVYVPILKAYCKENRTAEASLLVTEISSSG 435
Query: 446 LVQNLSCEMVVSE------------------RFSEVADKSASF-TDTSSLMD--KSDLAE 484
L ++ + E R + V D S+ T + LM+ + +L
Sbjct: 436 LKLDVETYDALIETSMSGQDFQSVFSLFRDMRGARVLDLKGSYLTIMTGLMENHRPELMA 495
Query: 485 SLIQEMREEAALST-IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ + E+ E+ + + NS I+ FCK + DA + +RRM ++ P +T+ L+ G
Sbjct: 496 AFLDEVVEDPRIEVGTHDWNSIIHAFCKAGRLEDARRTFRRMTFLQFEPNDQTYLSLING 555
Query: 544 HSSLEMYRDITILWGDIKRNIESG---VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
+ S E Y D+ +LW ++KR + + ++L + L ++GG+F+ VM+V+ K
Sbjct: 556 YVSAEKYFDVMMLWNEVKRKLAGDGPKGIKFDQNLVDAFLYAMVKGGFFDAVMQVVEKSK 615
Query: 601 KQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
+ ++VDK YK F++ HK +LKV+ R + +++ + AF+ WAG++
Sbjct: 616 EMKIFVDKWRYKQAFMETHK----KLKVARLRKK-NVRKMEALIAFKNWAGLN 663
>gi|297841661|ref|XP_002888712.1| hypothetical protein ARALYDRAFT_339164 [Arabidopsis lyrata subsp.
lyrata]
gi|297334553|gb|EFH64971.1| hypothetical protein ARALYDRAFT_339164 [Arabidopsis lyrata subsp.
lyrata]
Length = 1042
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 155/675 (22%), Positives = 286/675 (42%), Gaps = 105/675 (15%)
Query: 7 VQQEKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCY 66
Q++K S+E + L + H EAW+ F +PE+ ++N IT L
Sbjct: 54 TQEQKSSFEST--------LHDSLTTHNTDEAWKAFRSLTAASSLPEKRLINSLITHLSN 105
Query: 67 SAE-----PHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLG 121
+ E H L++A + + LL+ + + L S+ A+ PA +++ M
Sbjct: 106 TEESGENTAHRLKRAFASAAYVIQKDPILLEFETVRTLMESMKLAKAAGPALALVKCMFK 165
Query: 122 RENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVF---LHLSAEKSNGAELIKPDTM 178
DL + H++ I C + L VF ++ ++ + +KPD +
Sbjct: 166 NRYFVPFDL----WGHLI---IDICRENGSLAAFLKVFKESCRIAVDEK--LDFMKPDLV 216
Query: 179 IFNLVLHACVRFGSSL-KGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCY 237
N L AC R SL +++E M+ GV D S LA ++ R+++ + +
Sbjct: 217 ASNAALEACCRQLESLADADNVIESMAVLGVKPDELSFGFLAYLYARKGLREKISELENL 276
Query: 238 IDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYL 297
+D FA + Y +++S + K D+D ++IL L+ D ++
Sbjct: 277 MDGFG--FASR-RILYSNMISGYVKSGDLDNVSDVILH-----------SLKGDGKESGF 322
Query: 298 IS----------IGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAM 347
I S +++ K+ I + LE SI ++ L S++A
Sbjct: 323 GEETYCELVKGFIESKSVKGLAKVIIEAQKLESSSIDADSSVGFGIINACVNLGFSDKAH 382
Query: 348 AKLINGYKKHGKNSELSWLLLSIK---KEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
+ L + G + + + +K KE+ + + L +++ + +QL
Sbjct: 383 SILEEMIAQGGGSVGIGAYVPILKAYCKEYRTAEATQLVTEINSSGLQL----------- 431
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
D+E+ Y +L+ A + F A L + MR+ + V
Sbjct: 432 DVEI---------YNALIEASMTNQDFISAFTLFRDMRE-----------------TRVG 465
Query: 465 DKSASF-TDTSSLMD--KSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALK 520
D S+ T + L++ + +L + + E+ E+ + + NS I+ FCK + DA +
Sbjct: 466 DLKGSYLTIMTGLLENQRPELMAAFLDEVVEDPRVEVNSHDWNSIIHAFCKSGRLEDARR 525
Query: 521 IYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD-----L 575
+RRM ++ P +T+ L+ G+ S E Y ++ +LW +IK I S + A R L
Sbjct: 526 TFRRMVFLRYEPNNQTYLSLINGYVSGEKYFNVLLLWNEIKGKI-SSMEAEKRSKLDHAL 584
Query: 576 YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEA 635
+ L ++GG+F+ M+V+ ++ ++VDK YK F++ HK L RL R
Sbjct: 585 VDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKWRYKQAFMETHKKL--RLPKLRKRNYK 642
Query: 636 QSKRLVNVQAFRKWA 650
+ + LV AF+ WA
Sbjct: 643 KMESLV---AFKNWA 654
>gi|357487751|ref|XP_003614163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515498|gb|AES97121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 660
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 146/293 (49%), Gaps = 30/293 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+++A + +G + AH ILD+M G + Y +L AY K EA L+ ++ S
Sbjct: 372 IVNACVSIGLSDKAHSILDEMNALGGSVGLGVYVPILKAYCKENRTAEASLLVTEISSSG 431
Query: 446 LVQNLSCEMVVSE------------------RFSEVADKSASF-TDTSSLMD--KSDLAE 484
L ++ + E R + V D S+ T + LM+ + +L
Sbjct: 432 LKLDVETYDALIETSMSGQDFQSVFSLFRDMRGARVLDLKGSYLTIMTGLMENHRPELMA 491
Query: 485 SLIQEMREEAALST-IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ + E+ E+ + + NS I+ FCK + DA + +RRM ++ P +T+ L+ G
Sbjct: 492 AFLDEVVEDPRIEVGTHDWNSIIHAFCKAGRLEDARRTFRRMTFLQFEPNDQTYLSLING 551
Query: 544 HSSLEMYRDITILWGDIKRNIESG---VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
+ S E Y D+ +LW ++KR + + ++L + L ++GG+F+ VM+V+ K
Sbjct: 552 YVSAEKYFDVMMLWNEVKRKLAGDGPKGIKFDQNLVDAFLYAMVKGGFFDAVMQVVEKSK 611
Query: 601 KQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
+ ++VDK YK F++ HK +LKV+ R + +++ + AF+ WAG++
Sbjct: 612 EMKIFVDKWRYKQAFMETHK----KLKVARLRKK-NVRKMEALIAFKNWAGLN 659
>gi|414880174|tpg|DAA57305.1| TPA: hypothetical protein ZEAMMB73_061992 [Zea mays]
Length = 680
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 144/301 (47%), Gaps = 39/301 (12%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
E ++ +++A ++LG L AH ILD+M G + Y S+L AY K + EA L+
Sbjct: 392 EDSVGFGIVNACVELGLLNKAHSILDEMTAQGASVGLGVYSSILKAYCKEQKTAEAAQLV 451
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVADKSASFT-------------DTSSLMDKSDLAE- 484
++ + L + + + D ++F TS L + L E
Sbjct: 452 AEISAAGLQLDAGSYDALIDASMTAHDFQSAFALFKDMREARLPELRTSYLTIMTGLTEN 511
Query: 485 -----------SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT 533
S++ + R E A + NS I+ FCK + DA + YRRM ++ P
Sbjct: 512 NKPGLMASFLDSVVDDPRIEIA---THDWNSIIHAFCKVGRLDDARRTYRRMVFLRFEPN 568
Query: 534 VETFYYLVYGHSSLEMYRDITILWGDI-KRNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
+T+ L+ G+ S E Y + ILW ++ +R IE + +L + L ++GG+F+
Sbjct: 569 NQTYLSLINGYVSTEKYFSVLILWTEVRRRGIE-----FNHELIDAFLYALVKGGFFDMA 623
Query: 593 MEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
M+VI ++ +++DK YK F++ HK +LKV+ R +++ + AFR WAGI
Sbjct: 624 MQVIEKAQEFKIFIDKWRYKQAFMETHK----KLKVAKLRKR-NFRKMEALVAFRNWAGI 678
Query: 653 D 653
+
Sbjct: 679 N 679
>gi|224137964|ref|XP_002326484.1| predicted protein [Populus trichocarpa]
gi|222833806|gb|EEE72283.1| predicted protein [Populus trichocarpa]
Length = 203
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 95/149 (63%), Gaps = 13/149 (8%)
Query: 288 LRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAM 347
++ DA L+ + LK Q + +L+ + ++ KQELV+F +G+LL SNRA+
Sbjct: 64 VKPDAMAFNLVLDACVRFKSSLKGQEIVDLMSQTELILDMHKQELVIFWSGELLLSNRAL 123
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
AKL+NGY+KHG+ SELS LLL I+++ H+FG+S+ +LE AHDIL+DM+
Sbjct: 124 AKLVNGYRKHGRTSELSKLLLCIQQDFHAFGQSS-------------WLEMAHDILNDMD 170
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEA 436
AG T + +LLTAYY +MF+EA+A
Sbjct: 171 AAGDLTGFTQHMALLTAYYSREMFKEAKA 199
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 71/122 (58%), Gaps = 33/122 (27%)
Query: 93 LDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFL 152
+ +L K+ LSLARA MPVP SMILR++L REN+P
Sbjct: 15 VPVLTKIPLSLARAHMPVPTSMILRVILERENMPP------------------------- 49
Query: 153 IQLCDVFLH-LSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD 211
LH L +++S A+++KPD M FNLVL ACVRF SSLKGQ I++LMSQT ++ D
Sbjct: 50 -------LHILCSKRSVHAKVVKPDAMAFNLVLDACVRFKSSLKGQEIVDLMSQTELILD 102
Query: 212 AH 213
H
Sbjct: 103 MH 104
>gi|297838671|ref|XP_002887217.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333058|gb|EFH63476.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 623
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 147/658 (22%), Positives = 268/658 (40%), Gaps = 118/658 (17%)
Query: 32 NHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCY-------SAEPHWLQKACDLVLKIQ 84
H +AW+ F F +P++ ++N IT L ++ H L++A +
Sbjct: 45 THDTDQAWKVFRSFAAASSLPDKRLLNSLITHLSSLHHADQNTSLRHRLKRAFVSTTYVI 104
Query: 85 KGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIG 144
+ LL+ + + + S+ A+ PA ++ M DL + + + +E G
Sbjct: 105 EKDPILLEFETIRTVLESMKLAKTSGPALALVECMFKNRYFVPFDLWGRLIIDIC-SETG 163
Query: 145 TCLASNFLIQLCDVFLHLSAEKSNGA-----ELIKPDTMIFNLVLHACV-RFGSSLKGQH 198
+ A FL + E A + +KPD + N L AC + S +
Sbjct: 164 SLAA----------FLKVFRESCRIAVYEKLDFMKPDLVASNAALEACCWQLESLADAED 213
Query: 199 IMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLS 258
++E M+ GV D S LA ++ R+++ + + +D F + Y +++S
Sbjct: 214 VIESMAVLGVKPDESSFGFLAYLYARKGLREKISEIENSMDGFG--FVSR-RILYSNVIS 270
Query: 259 LHFKFDDIDAAGELIL-DMNRYREPLPNPKLRQDAQKPYLIS-IGSPNLRCGLKLQIMPE 316
+ K D+D+ ++IL + R E + R++ + I S +++C KL I +
Sbjct: 271 GYVKSGDLDSVSDVILHSLKRGGE---DSSFREETYCELVKGFIESKSVKCLAKLIIEAQ 327
Query: 317 LLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHS 376
LE SI +NG G
Sbjct: 328 KLESLSI--------------------------DVNGSVGFG------------------ 343
Query: 377 FGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEA 436
+++A ++LGF + ILD+M G Y +L AY K EA
Sbjct: 344 ---------IVNACVKLGF--SGKSILDEMNAQGGSGGIGVYVPILKAYCKEGGTAEATQ 392
Query: 437 LLKQMRKSCL-----VQNLSCEMVVSE-------------RFSEVAD-KSASFTDTSSLM 477
L+ ++ S L N E +++ R ++V+D K T + L+
Sbjct: 393 LVTEISSSGLQLDVETYNTMIEFSMTKQDFLSALTLFKDMRETKVSDLKRCYLTIMTGLL 452
Query: 478 D--KSDLAESLIQEMREEAALST-IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
+ + DL ++E+ E+ + + NS I+ FCK + DA +RRM ++ P
Sbjct: 453 ENQRPDLMAEFVEEVVEDPRVEVKSHDWNSIIHAFCKSGRLEDAKSTFRRMAFLQYEPNN 512
Query: 535 ETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVME 594
+T+ L+ G+ S E Y ++ +LW + K + L + L ++GG+F ++
Sbjct: 513 QTYLSLINGYVSCEKYFEVVVLWKEFKDKKAK----LEHALADAFLNALVKGGFFGTALQ 568
Query: 595 VIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
VI ++ ++VDK YK+ F++ K+L RL R + + L AF+ WAG+
Sbjct: 569 VIEKCQEMKIFVDKWRYKATFMETQKNL--RLPKLRKRKMKKMEFL---DAFKNWAGL 621
>gi|242058949|ref|XP_002458620.1| hypothetical protein SORBIDRAFT_03g036830 [Sorghum bicolor]
gi|241930595|gb|EES03740.1| hypothetical protein SORBIDRAFT_03g036830 [Sorghum bicolor]
Length = 674
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 145/310 (46%), Gaps = 57/310 (18%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDM-------------------------------- 406
E ++ +++A ++LG L AH ILD+M
Sbjct: 386 EDSVGFGIVNACVELGLLNKAHSILDEMTAQGASIGLGVYSSILKAYCKEHKTAEAAQLV 445
Query: 407 ---ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
AG +D+ +Y +L+ A F+ A AL K MR++ L + + + + +E
Sbjct: 446 AEISAAGLKLDAGSYDALIDASMTAHDFQSAFALFKDMREARLPELRTSYLTIMTGLTE- 504
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
+ LM + +S++ + R E A + NS I+ FCK + DA + YR
Sbjct: 505 -------NNKPGLM--ASFLDSVVDDPRIEIA---THDWNSIIHAFCKVGRLEDARRTYR 552
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNF 583
RM ++ P +T+ L+ G+ S E Y ++ ILW +++R + +L + L
Sbjct: 553 RMVFLRFEPNNQTYLSLINGYVSAEKYFNVLILWTEVRRKGTE----FNHELIDAFLYAL 608
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNV 643
++GG+F+ M+VI ++ +++DK YK F++ HK +LKV+ R +++ +
Sbjct: 609 VKGGFFDMAMQVIEKAQEFKIFIDKWRYKQAFMETHK----KLKVAKLRKR-NFRKMEAL 663
Query: 644 QAFRKWAGID 653
AF+ WAGI+
Sbjct: 664 VAFKNWAGIN 673
>gi|356502616|ref|XP_003520114.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g69290-like [Glycine max]
Length = 624
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 159/333 (47%), Gaps = 34/333 (10%)
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHS--FGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+++ Y + G L+ L++ +K S + ++ +++A + +G + AH ILD+M
Sbjct: 297 EVVKAYFQKGNIKGLASLIVEAQKLEGSDIMIDKSIGYGIVNACVNIGLSDKAHSILDEM 356
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS----------CLVQNLSCEMVV 456
G + Y +L AY K EA ++ ++ S LV+ C
Sbjct: 357 NALGASVGLGVYIPILKAYCKENRTAEATQMVMEISNSGLQLDVGTYDALVEAAMCAQDF 416
Query: 457 SERFSEVAD---------KSASFTDTSSLMD--KSDLAESLIQEMREEAALST-IYKLNS 504
FS D K + T + LM+ + +L + + E+ E+ + + NS
Sbjct: 417 QSAFSLFRDMRDARIPDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRIEVGTHDWNS 476
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
I+ FCK + DA + +RRM ++ P +T+ ++ G+ E Y + +LW ++KR +
Sbjct: 477 IIHAFCKAGRLEDARRTFRRMMFLQFEPNDQTYLSMINGYVLAEKYFLVLMLWNEVKRKL 536
Query: 565 ----ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
+ G+ +L + L ++GG+F+ VM+V+ + ++VDK YK F++ HK
Sbjct: 537 SLDGQKGI-KFDHNLVDAFLYAMVKGGFFDAVMQVVEKAYEMRVFVDKWRYKQAFMETHK 595
Query: 621 HLYRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
+LKV+ R + +++ + AF+ WAG++
Sbjct: 596 ----KLKVAKLR-KRNFRKMEALIAFKNWAGLN 623
>gi|357125396|ref|XP_003564380.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g69290-like [Brachypodium distachyon]
Length = 668
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 113/486 (23%), Positives = 221/486 (45%), Gaps = 48/486 (9%)
Query: 172 LIKPDTMIFNLVLHACVR-FGSSLKGQHIMELMSQTGVVADAHSIIILAQIH---EMNCQ 227
+++PD N VL C R GS + ++E+MS GV D S LA ++ ++ +
Sbjct: 226 VMRPDLAACNAVLDGCCRRLGSITDAERVLEIMSAIGVSPDVESFGCLAFLYAWRDVPSR 285
Query: 228 RDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPK 287
DEL D+L + F+++L+S + K ++ +IL + R
Sbjct: 286 VDEL-------DKLLEALGFSKKIFFKNLVSGYLKCCSFESVSSIILRTLKER------- 331
Query: 288 LRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAM 347
R + + +C + + EL + L ++ QE+ L + ++ +
Sbjct: 332 -RVRDGNAFDDECYTEVAQCFVDNGRIKELAQ----LIIQA-QEIELTQQSLVVDDSVGF 385
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
++N G S+ +L + + S G + S ++ A + A ++ ++
Sbjct: 386 G-IVNACVGLGLLSKAHSILDEMTAQGASVGLG-IYSPILKAYCKEQKTAEAAQLVAEIT 443
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
AG +D+ +Y +L+ A F+ A L K MR++ + + + + +E
Sbjct: 444 AAGLQLDAGSYDALIDASMTAHDFQSAFTLFKDMREARVPNLRTSYLTIMTGLTE----- 498
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ LM + +S++ + R E A + NS I+ FCK + DA + YRRM
Sbjct: 499 ---NNRPELM--ASFLDSVVDDPRIEIA---THDWNSIIHAFCKVGRLEDARRTYRRMVF 550
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
+ P +T+ L+ G+ S E Y ++ ILW +++R + + +L + L ++GG
Sbjct: 551 LIFEPNNQTYLSLINGYLSAEKYFNVLILWTEVRRKGAN----FNHELIDAFLYALVKGG 606
Query: 588 YFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFR 647
+F+ M+VI ++ ++VDK +K F++ HK +LKV+ R +++ + AF+
Sbjct: 607 FFDMAMQVIEKAQELKIFVDKWRHKQAFMETHK----KLKVAKLRKR-NFRKMEALIAFK 661
Query: 648 KWAGID 653
WAG++
Sbjct: 662 NWAGLN 667
>gi|302761110|ref|XP_002963977.1| hypothetical protein SELMODRAFT_82002 [Selaginella moellendorffii]
gi|300167706|gb|EFJ34310.1| hypothetical protein SELMODRAFT_82002 [Selaginella moellendorffii]
Length = 716
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 138/682 (20%), Positives = 278/682 (40%), Gaps = 132/682 (19%)
Query: 38 AWETFNDFQRLHGI-PERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGK--ADLLQLD 94
AW F + G+ P+R V+R + LC+ + KA +++++++ + ++L+ D
Sbjct: 87 AWTKFETMTKKLGVLPDRVCVSRLVAQLCHQGTAASVSKAQQIMVELRQKRKVSELVDCD 146
Query: 95 LLAKLSLSLARAQMPVPASMILRLMLG-----------------RENLPCSDLLLLVFVH 137
+ L ++ AR + +LR ML +N+ + L L VF
Sbjct: 147 AMGLLVMASARVGTAHYSLGVLRTMLELGYHPPVKVWSALVSKLGKNVDDAQLALKVF-- 204
Query: 138 MVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQ 197
E+ C+A +IQL H E+ +KPDT FN L+AC G+ + +
Sbjct: 205 ---DEVCQCVAEQGMIQL-----HRKMER------MKPDTGAFNAALNACANIGNLERAE 250
Query: 198 HIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLL 257
+ ELM GV A+ + ++ +++ + ++L K + + ++ + SL+
Sbjct: 251 QLWELMPAFGVKANTLTFNVMIKLY---ARVEKLDKLEQILHTMADADVDPDATTFNSLV 307
Query: 258 SLHFKFDDIDAAGELILDM-----NRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQ 312
+ ++ A ++ + ++ R P PKLR+ + K
Sbjct: 308 AAFVGLGELSLAESIVQSLRGEGEHQTRVPALLPKLREHSAK------------------ 349
Query: 313 IMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKK 372
P++ R L+ GY +H + S+ LL+++++
Sbjct: 350 FQPDV---------------------------RTYTTLMKGYVQHNRVSDAMQLLVAMQQ 382
Query: 373 EHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY--YK 427
E S E T + I A ++G L+ A IL +M + TY +LL +
Sbjct: 383 EKTSAAMPNEVTFTT-AIRACAKMGLLDEARVILQEMATQKVAANVVTYNTLLQGVCVFP 441
Query: 428 VKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS---ASFTD------TSSLMD 478
+ + A +++ M+++ + ++ + + E D A+FT +S +
Sbjct: 442 ITDMKRALEIVEDMKEAGVELDVVSYNTLINGYLEAGDNEQALAAFTRMREAKVPASKVT 501
Query: 479 KSDLAESLIQEMREEAALSTIYKL-------------NSSIYFFCKGKMIGDALKIYRRM 525
L ++ + R E + ++ N+ I + + + DA + M
Sbjct: 502 YGTLMKAFARSGRTELVVKVFTQMALDPRVRVDVVAWNTLIDAYARAGLEQDATRALEDM 561
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIES------------GVLAVS 572
+ PT T+ LV + + + +LW +I R++E G L
Sbjct: 562 KSRGFSPTNATYNTLVKTYGRSRNFGLLILLWKEINARSVEEDSAAVRDKPLVVGALKPD 621
Query: 573 RDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD--KLMYKSEFLKHHKHLYRRLKVSN 630
L ++L+ +F++GGYF+ ++V+ M +Q ++ K YK +++ + +LY S
Sbjct: 622 AALLDSLIDSFVRGGYFQLALQVVDCMDRQGIHSGRAKAKYKRLYVELYANLYTSRHTSE 681
Query: 631 ARTEAQSKRLVNVQAFRKWAGI 652
R ++R V+AF+ W G+
Sbjct: 682 RRKSKTAERRRAVEAFKFWVGL 703
>gi|12325092|gb|AAG52501.1|AC018364_19 unknown protein; 45065-49536 [Arabidopsis thaliana]
Length = 860
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 163/335 (48%), Gaps = 36/335 (10%)
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFG--ESTLCSDVIDALIQLGFLEAAHDILDDM 406
+L+ G+ + L+ ++L +K S+ +S++ +I+A + LGF + AH IL++M
Sbjct: 531 ELVKGFIESKSVKSLAKVILEAQKLESSYVGVDSSVGFGIINACVNLGFSDKAHSILEEM 590
Query: 407 -ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL-----VQNLSCEMVVSE-- 458
G + Y +L AY K EA L+ ++ S L + N E ++
Sbjct: 591 IAQGGGSVGIGVYVPILKAYCKEYRTAEATQLVTEISSSGLQLDVEISNALIEASMTNQD 650
Query: 459 -----------RFSEVADKSASF-TDTSSLMD--KSDLAESLIQEMREEAALS-TIYKLN 503
R + V D S+ T + L++ + +L + + E+ E+ + + N
Sbjct: 651 FISAFTLFRDMRENRVVDLKGSYLTIMTGLLENQRPELMAAFLDEVVEDPRVEVNSHDWN 710
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
S I+ FCK + DA + +RRM ++ P +T+ L+ G+ S E Y ++ +LW +IK
Sbjct: 711 SIIHAFCKSGRLEDARRTFRRMVFLRYEPNNQTYLSLINGYVSGEKYFNVLLLWNEIKGK 770
Query: 564 IESGVLAVSRD-----LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKH 618
I S V A R L + L ++GG+F+ M+V+ ++ ++VDK YK F++
Sbjct: 771 ISS-VEAEKRSRLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKWRYKQAFMET 829
Query: 619 HKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
HK L RL R + + LV AF+ WAG++
Sbjct: 830 HKKL--RLPKLRKRNYKKMESLV---AFKNWAGLN 859
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 111/251 (44%), Gaps = 21/251 (8%)
Query: 33 HQVGEAWETFNDFQRLHGIPERHVVNRFITDLC---YSAE--PHWLQKACDLVLKIQKGK 87
H EAW+ F +PE+ ++N IT L S E H L++A + +
Sbjct: 274 HYTDEAWKAFRSLTAASSLPEKRLINSLITHLSGVEGSGESISHRLKRAFASAAYVIEKD 333
Query: 88 ADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCL 147
LL+ + + L S+ A+ PA +++ M DL + H+V I C
Sbjct: 334 PILLEFETVRTLLESMKLAKAAGPALALVKCMFKNRYFVPFDL----WGHLV---IDICR 386
Query: 148 ASNFLIQLCDVF---LHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLK-GQHIMELM 203
+ L VF +S ++ E +KPD + N L AC R SL ++++E M
Sbjct: 387 ENGSLAPFLKVFKESCRISVDEK--LEFMKPDLVASNAALEACCRQMESLADAENVIESM 444
Query: 204 SQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKF 263
+ GV D S LA ++ R+++ + + +D FA + Y +++S + K
Sbjct: 445 AVLGVKPDELSFGFLAYLYARKGLREKISELENLMDGFG--FASR-RILYSNMISGYVKS 501
Query: 264 DDIDAAGELIL 274
D+D+ ++IL
Sbjct: 502 GDLDSVSDVIL 512
>gi|15221572|ref|NP_177062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75333630|sp|Q9CAA5.1|PP109_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g68980, mitochondrial; Flags: Precursor
gi|12323218|gb|AAG51590.1|AC011665_11 unknown protein [Arabidopsis thaliana]
gi|110740675|dbj|BAE98440.1| hypothetical protein [Arabidopsis thaliana]
gi|332196751|gb|AEE34872.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 145/645 (22%), Positives = 268/645 (41%), Gaps = 92/645 (14%)
Query: 32 NHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCY-------SAEPHWLQKACDLVLKIQ 84
H +AW+ F F +P++ ++N IT L ++ H L++A +
Sbjct: 41 THDTDQAWKVFRSFAAASSLPDKRLLNSLITHLSSFHNTDQNTSLRHRLKRAFVSTTYVI 100
Query: 85 KGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIG 144
+ LL+ + + + S+ A+ PA ++ M DL + + + + E G
Sbjct: 101 EKDPILLEFETVRTVLESMKLAKASGPALALVECMFKNRYFVPFDLWGDLLIDVCR-ENG 159
Query: 145 TCLASNFLIQLCDVFLHLSAEKSNGA-----ELIKPDTMIFNLVLHACVRFGSSLK-GQH 198
+ A FL + E A + +KPD + N L AC R SL ++
Sbjct: 160 SLAA----------FLKVFRESCRIAVDEKLDFMKPDLVASNAALEACCRQMESLADAEN 209
Query: 199 IMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLS 258
++E M GV D S LA ++ R+++ + + +D L FA + Y S++S
Sbjct: 210 LIESMDVLGVKPDELSFGFLAYLYARKGLREKISELEDLMDGLG--FASR-RILYSSMIS 266
Query: 259 LHFKFDDIDAAGELIL-------DMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKL 311
+ K D+D+A ++IL + + + E +R I S ++ KL
Sbjct: 267 GYVKSGDLDSASDVILCSLKGVGEASSFSEETYCELVRG--------FIESKSVESLAKL 318
Query: 312 QIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIK 371
I + LE S ++ KL S +++ +N G +L +
Sbjct: 319 IIEAQKLESMSTDVGGSVGFGIVNACVKLGFSGKSILDELNAQGGSGGIGVYVPILKAYC 378
Query: 372 KEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMF 431
KE + + L +++ + +QL D TY +++ A F
Sbjct: 379 KEGRTSEATQLVTEISSSGLQL--------------------DVETYNTMIEASMTKHDF 418
Query: 432 REAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD-KSASFTDTSSLMD--KSDLAESLIQ 488
A L + MR+ + VAD K T + L++ + +L ++
Sbjct: 419 LSALTLFRDMRE-----------------TRVADLKRCYLTIMTGLLENQRPELMAEFVE 461
Query: 489 EMREEAALST-IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL 547
E+ E+ + + NS I+ FCK +GDA +RRM ++ P +T+ L+ G+ S
Sbjct: 462 EVMEDPRVEVKSHDWNSIIHAFCKSGRLGDAKSTFRRMTFLQYEPNNQTYLSLINGYVSC 521
Query: 548 EMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
E Y ++ ++W + K + L + L ++GG+F ++VI ++ ++VD
Sbjct: 522 EKYFEVVVIWKEFKDKKAK----LEHALADAFLNALVKGGFFGTALQVIEKCQEMKIFVD 577
Query: 608 KLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
K YK+ F++ K+L RL R + K++ + AF+ WA I
Sbjct: 578 KWRYKATFMETQKNL--RLPKLRKR---KMKKIEFLDAFKNWARI 617
>gi|30697827|ref|NP_177089.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806277|sp|P0C7R4.1|PP110_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g69290
gi|332196785|gb|AEE34906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 658
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 163/335 (48%), Gaps = 36/335 (10%)
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFG--ESTLCSDVIDALIQLGFLEAAHDILDDM 406
+L+ G+ + L+ ++L +K S+ +S++ +I+A + LGF + AH IL++M
Sbjct: 329 ELVKGFIESKSVKSLAKVILEAQKLESSYVGVDSSVGFGIINACVNLGFSDKAHSILEEM 388
Query: 407 -ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL-----VQNLSCEMVVSE-- 458
G + Y +L AY K EA L+ ++ S L + N E ++
Sbjct: 389 IAQGGGSVGIGVYVPILKAYCKEYRTAEATQLVTEISSSGLQLDVEISNALIEASMTNQD 448
Query: 459 -----------RFSEVADKSASF-TDTSSLMD--KSDLAESLIQEMREEAALS-TIYKLN 503
R + V D S+ T + L++ + +L + + E+ E+ + + N
Sbjct: 449 FISAFTLFRDMRENRVVDLKGSYLTIMTGLLENQRPELMAAFLDEVVEDPRVEVNSHDWN 508
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
S I+ FCK + DA + +RRM ++ P +T+ L+ G+ S E Y ++ +LW +IK
Sbjct: 509 SIIHAFCKSGRLEDARRTFRRMVFLRYEPNNQTYLSLINGYVSGEKYFNVLLLWNEIKGK 568
Query: 564 IESGVLAVSRD-----LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKH 618
I S V A R L + L ++GG+F+ M+V+ ++ ++VDK YK F++
Sbjct: 569 I-SSVEAEKRSRLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKWRYKQAFMET 627
Query: 619 HKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
HK L RL R + + LV AF+ WAG++
Sbjct: 628 HKKL--RLPKLRKRNYKKMESLV---AFKNWAGLN 657
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 111/251 (44%), Gaps = 21/251 (8%)
Query: 33 HQVGEAWETFNDFQRLHGIPERHVVNRFITDLC---YSAE--PHWLQKACDLVLKIQKGK 87
H EAW+ F +PE+ ++N IT L S E H L++A + +
Sbjct: 72 HYTDEAWKAFRSLTAASSLPEKRLINSLITHLSGVEGSGESISHRLKRAFASAAYVIEKD 131
Query: 88 ADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCL 147
LL+ + + L S+ A+ PA +++ M DL + H+V I C
Sbjct: 132 PILLEFETVRTLLESMKLAKAAGPALALVKCMFKNRYFVPFDL----WGHLV---IDICR 184
Query: 148 ASNFLIQLCDVF---LHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLK-GQHIMELM 203
+ L VF +S ++ E +KPD + N L AC R SL ++++E M
Sbjct: 185 ENGSLAPFLKVFKESCRISVDEK--LEFMKPDLVASNAALEACCRQMESLADAENVIESM 242
Query: 204 SQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKF 263
+ GV D S LA ++ R+++ + + +D FA + Y +++S + K
Sbjct: 243 AVLGVKPDELSFGFLAYLYARKGLREKISELENLMDGFG--FASR-RILYSNMISGYVKS 299
Query: 264 DDIDAAGELIL 274
D+D+ ++IL
Sbjct: 300 GDLDSVSDVIL 310
>gi|302768505|ref|XP_002967672.1| hypothetical protein SELMODRAFT_88400 [Selaginella moellendorffii]
gi|300164410|gb|EFJ31019.1| hypothetical protein SELMODRAFT_88400 [Selaginella moellendorffii]
Length = 717
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 137/682 (20%), Positives = 276/682 (40%), Gaps = 132/682 (19%)
Query: 38 AWETFNDFQRLHGI-PERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGK--ADLLQLD 94
AW F + G+ P+R V+R + LC+ + KA +++++++ + ++L+ D
Sbjct: 88 AWTKFETMTKKLGVLPDRVCVSRLVAQLCHQGTAASVSKAQQIMVELRQKRKVSELVDCD 147
Query: 95 LLAKLSLSLARAQMPVPASMILRLMLG-----------------RENLPCSDLLLLVFVH 137
+ L ++ AR + +LR ML +N+ + L L VF
Sbjct: 148 AMGLLVMASARVGTAHYSLGVLRTMLELGYHPPVKVWSAVVSKLGKNVDDAQLALKVF-- 205
Query: 138 MVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQ 197
E+ C+ +IQL H E+ +KPDT FN L+AC G+ + +
Sbjct: 206 ---DEVCQCVVEQGMIQL-----HRKMER------MKPDTGAFNAALNACANIGNLERAE 251
Query: 198 HIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLL 257
+ ELM GV A+ + ++ +++ + ++L K + + ++ + SL+
Sbjct: 252 QLWELMPAFGVKANTLTFNVMIKLY---ARVEKLDKLEQILHTMADADVDPDATTFNSLV 308
Query: 258 SLHFKFDDIDAAGELILDM-----NRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQ 312
+ ++ A ++ + ++ R P PKLR+ + K
Sbjct: 309 AAFVGLGELSLAESIVQSLRGEGEHQKRVPALLPKLREHSAK------------------ 350
Query: 313 IMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKK 372
P++ R L+ GY +H + S+ LL+++++
Sbjct: 351 FQPDV---------------------------RTYTTLMKGYVQHNRVSDAMQLLVAMQQ 383
Query: 373 EHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY--YK 427
E S E T + I A ++G L+ A IL +M + TY +LL +
Sbjct: 384 EKTSAAMPNEVTFTT-AIRACAKMGLLDEARVILQEMATQKVAANVVTYNTLLQGVCVFP 442
Query: 428 VKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS---ASFTD------TSSLMD 478
+ + A +++ M+++ + ++ + + E D A FT +S +
Sbjct: 443 ITDMKRALEIVEDMKEAGVELDVVSYNTLINGYLEAGDNEQALAVFTRMREAKVPASKVT 502
Query: 479 KSDLAESLIQEMREEAALSTIYKL-------------NSSIYFFCKGKMIGDALKIYRRM 525
L ++ + R E + ++ N+ I + + + DA + M
Sbjct: 503 YGTLMKAFARSGRTELVVKVFTQMALDPRVRVDVVAWNTLIDAYARAGLEQDATRALEDM 562
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIES------------GVLAVS 572
+ PT T+ LV + + + +LW +I R++E G L
Sbjct: 563 KSRGFSPTNATYNTLVKTYGRSRNFGQLILLWKEINARSVEEDSAAVRDKPLVVGALKPD 622
Query: 573 RDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD--KLMYKSEFLKHHKHLYRRLKVSN 630
L ++L+ +F++GGYF+ ++V+ M +Q ++ K YK +++ + +LY S
Sbjct: 623 AALLDSLIDSFVRGGYFQLALQVVDCMDRQGIHSGRAKAKYKRLYVELYANLYTSRHTSE 682
Query: 631 ARTEAQSKRLVNVQAFRKWAGI 652
R ++R V+AF+ W G+
Sbjct: 683 RRKSKTAERRRAVEAFKFWVGL 704
>gi|225439751|ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
chloroplastic-like [Vitis vinifera]
Length = 749
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 137/662 (20%), Positives = 280/662 (42%), Gaps = 65/662 (9%)
Query: 31 KNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADL 90
+ + EAW T+ +L P ++R ++ L Y L +A ++ ++ + + L
Sbjct: 89 RQRKTEEAWLTYVQCTQL---PSPTCLSRLVSQLSYQNTHQALTRAQSIIQRL-RNERQL 144
Query: 91 LQLDL--LAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLA 148
+LD L L++S A+A + A+ +++ ML LP V + + L
Sbjct: 145 HRLDANSLGLLAVSAAKAGHTLYAASLIKSMLRSGYLPHVKAWSAVVSRLAASGDDGPLE 204
Query: 149 SNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGV 208
+ L +H + + A+ +PDT +N VL+AC G + + + E M+Q G
Sbjct: 205 ALKLFDSVTRRIHRFTDATLVAD-SRPDTAAYNAVLNACANLGDTKRFLQVFEEMTQLGA 263
Query: 209 VADAHSIIILAQIHEMNCQRDELKKFKCYI-DQLSTPFAHHYQQFYESLLSLHFKFDDID 267
D + ++ ++ C R + K ++ +++ SL++ + F D++
Sbjct: 264 EPDVLTYNVMIKL----CARVDRKDLLVFVLERILDKGIQLCMTTLHSLVAAYVGFGDLE 319
Query: 268 AAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKL-QIMPELLEKDSILKM 326
A +L+ M R+ L K+ +D ++ +P G +++P +E+++
Sbjct: 320 TAEKLVQAMREGRQDLC--KILRD------VNSENPGNNEGYIFDKLLPNSVERNN---- 367
Query: 327 EGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES--TLCS 384
E L S R L+ GY K G+ ++ +L +++ + S + +
Sbjct: 368 ---SEPPLLPKAYAPDS-RIYTTLMKGYMKEGRVTDTVRMLEAMRHQDDSTSQPDHVTYT 423
Query: 385 DVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK- 443
V+ AL++ G ++ A +L +M G P + TY LL Y + +A+ L+++M
Sbjct: 424 TVVSALVKAGSMDRARQVLAEMTRIGVPANRVTYNILLKGYCEQLQIDKAKELVREMVDD 483
Query: 444 ---------------SCLVQNLSCEMVV---SERFSEVADKSASFTD---TSSLMDKSDL 482
C++ + S + R +A S+T +L + L
Sbjct: 484 EGIVPDVVSYNTLIDGCILVDDSAGALAYFNEMRARGIAPTKISYTTLMKAFALSGQPKL 543
Query: 483 AESLIQEM-REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
A + EM R+ + N + C+ ++ +A K +RM+E P V T+ L
Sbjct: 544 ANKVFDEMLRDPRVKVDLVAWNMLVEAHCRLGLVEEAKKTVQRMRENGFYPNVATYGSLA 603
Query: 542 YGHSSLEMYRDITILWGDIKRNI---ESGVLAVS--------RDLYETLLLNFLQGGYFE 590
G + + +LW ++K E G ++ S L +TL ++ +F
Sbjct: 604 NGIALARKPGEALLLWNEVKERCVVKEEGEISKSSPPPLKPDEGLLDTLADICVRAAFFR 663
Query: 591 RVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWA 650
+ +E++ M++ + +K Y +++ H ++ S AR + +S+R +AF+ W
Sbjct: 664 KALEIVACMEENGIPPNKSKYTRIYVEMHSRMFTSKHASKARQDRRSERKRAAEAFKFWL 723
Query: 651 GI 652
G+
Sbjct: 724 GL 725
>gi|297738088|emb|CBI27289.3| unnamed protein product [Vitis vinifera]
Length = 967
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 134/631 (21%), Positives = 260/631 (41%), Gaps = 98/631 (15%)
Query: 15 EGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQ 74
+ + E L L ++ + EAW++F P + + N I L + + L+
Sbjct: 57 QSPAPEDLESALHTSLSTNNTDEAWKSFKALTTNSTFPSKSLANSLIAHLASLHDLYNLK 116
Query: 75 KACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLML-GRENLPCSDLLLL 133
+A + + + LL + L S+ A PA ++ M R +P S +
Sbjct: 117 RAFASAVFLLEKNPSLLDFGTVRTLLGSMNSANTAAPAFALINCMFKNRYFMPFS-MWGG 175
Query: 134 VFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVR-FGS 192
V V + + + C + + EK E +KPD N+ L C + S
Sbjct: 176 VIVEITRRNRSFVAFLRVFNETCRIAID---EK---LESMKPDLDACNVALEGCSQDLES 229
Query: 193 SLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQ- 251
+ + ++E+MS G+ D S LA ++ + +++ + ++ L F ++
Sbjct: 230 VSEAEKVVEMMSVLGIQPDESSFGFLAYLYALKGLEEKIVE----LEGLMRGFGFSSKKV 285
Query: 252 FYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKL 311
Y L++ + K +++ I LR+D ++ PN
Sbjct: 286 IYSYLINAYVKSGNLEYVSRTIFR-----------SLREDDEQ-------GPNF------ 321
Query: 312 QIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIK 371
S +++ G+ ++G +L+ L++ +
Sbjct: 322 -------------------------------SEETYCEVVKGFLQNGSIKDLASLIIETQ 350
Query: 372 K-EHHSFG-ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVK 429
K E S + ++ +I A + LGFL+ AH ILD+M + G + Y S+L A+ K
Sbjct: 351 KLEPSSIAVDRSIGYGIISACVSLGFLDKAHSILDEMNVQGVSVGLGVYVSILKAFCKEH 410
Query: 430 MFREAEALLKQMRK-----------SCLVQNLSCEMVVSE-------RFSEVADKSASF- 470
EA L+ ++ + + ++S + S R + V D S+
Sbjct: 411 RTAEAAQLVTEISSLGLQLDAGSYDALIEASMSSQDFQSAFSLFRDMREARVPDMKGSYL 470
Query: 471 TDTSSLMD--KSDLAESLIQEMREEAALST-IYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
T + L + + +L + + E+ E+ + + NS I+ FCK + DA + +RRM
Sbjct: 471 TMMTGLTENHRPELMAAFLDEIVEDPRVEVGTHDWNSIIHAFCKVGRLEDARRTFRRMIF 530
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI----ESGVLAVSRDLYETLLLNF 583
++ P +T+ L+ G++S E Y + +LW ++KR I E GV +L + L
Sbjct: 531 LQFEPNDQTYLSLINGYASAEKYFSVLMLWNEVKRRISIDGEKGV-KFDHNLVDAFLYAL 589
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMYKSE 614
++GG+F+ VM+V+ ++ ++VDK +E
Sbjct: 590 VKGGFFDAVMQVVEKSQEMKIFVDKWRKDTE 620
>gi|356536919|ref|XP_003536980.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
chloroplastic-like [Glycine max]
Length = 716
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 150/698 (21%), Positives = 289/698 (41%), Gaps = 88/698 (12%)
Query: 17 SSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKA 76
+S E +KL S ++ + EAW ++ L P ++R ++ L Y L +A
Sbjct: 20 NSPEPRDQKLLSLLRDRKTEEAWLAYSHSTHL---PNPTCLSRLVSQLSYQNTLSSLTRA 76
Query: 77 CDLVLKIQKGKA-DLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVF 135
+V +++ + L + L L++S +A + A+ +LR ML LP
Sbjct: 77 QSIVTRLRNERQLHRLDANCLGLLAVSATKANHTLYAASLLRSMLRSGYLP--------- 127
Query: 136 VHM-VKTEIGTCLAS-----NFLIQLCDVFLHLSAE-----KSNGAELIKPDTMIFNLVL 184
H+ T + CLAS + + +F ++ A +PDT N L
Sbjct: 128 -HVKAWTAVVACLASSPDRGDGPAEALQLFRSVTRRLRRLPDPAMAAASRPDTAAVNAAL 186
Query: 185 HACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTP 244
+AC G + + M Q V DA S + ++ ++D L + QL P
Sbjct: 187 NACANLGDPRAFLQVFDEMPQFNVAPDALSYNTMIKLCCRIGRKDLLVFVLERVLQLEIP 246
Query: 245 FAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPN 304
F Q SL+S + +F D++ A +L+ M R + L++ + Y S G+ +
Sbjct: 247 FCVTTLQ---SLVSAYVEFGDLETAEKLVQAMREERRDICR-VLKECSNLEY--SSGNES 300
Query: 305 --------------LRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKL 350
C + +++P L+++ + E L G + R L
Sbjct: 301 SDDDDDDDDDDDDDNDCIFE-KLLPNLVDQSG-----NEVEPPLLPKG-YAPNTRTYTTL 353
Query: 351 INGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
+ GY G+ S+ +L ++++ + S + + V+ AL+++G ++ A +L +M
Sbjct: 354 MKGYMNAGRVSDTVRMLEAMRRLDDKGSQPDHVSYTTVVSALVKVGAMDRARQVLAEMTR 413
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQ------NL---SCEMVVSER 459
G P + TY LL Y K +A LLK+M +Q N+ C +V
Sbjct: 414 IGVPANLITYNVLLKGYCKQLQIDKARELLKEMVDDAGIQPDVVSYNILIDGCILVDDSA 473
Query: 460 -----FSEVADKSASFTDTS--SLM------DKSDLAESLIQEMREEAALST-IYKLNSS 505
F+E+ + + T S +LM + LA + EM + + + N
Sbjct: 474 GALSFFNEMRARGIAPTKISYTTLMKAFAYSGQPKLAHRVFNEMDSDPRVKVDLIAWNML 533
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
+ +C+ ++ +A K+ ++M+E P V T+ L G + + +LW ++K E
Sbjct: 534 VEGYCRLGLVEEAKKVVQKMKESGFHPDVGTYGSLANGIALARKPGEALLLWNEVKERCE 593
Query: 566 SGVLAVSRD-----------LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSE 614
G D L +T+ ++ +F + +E++ M++ + +K +
Sbjct: 594 VGKEGGKSDSSVPPLKPDGALLDTIADICVRAAFFRKALEIVACMEENGIPPNKTKFTRI 653
Query: 615 FLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
+++ H ++ S AR + + +R +AF+ W G+
Sbjct: 654 YVEMHSRMFTSKHASRARQDRRVERKRAAEAFKFWLGL 691
>gi|297741482|emb|CBI32614.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 130/651 (19%), Positives = 264/651 (40%), Gaps = 88/651 (13%)
Query: 31 KNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADL 90
+ + EAW T+ +L P ++R ++ L Y L +A ++ ++ + + L
Sbjct: 97 RQRKTEEAWLTYVQCTQL---PSPTCLSRLVSQLSYQNTHQALTRAQSIIQRL-RNERQL 152
Query: 91 LQLDL--LAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLA 148
+LD L L++S A+A + A+ +++ ML LP V + + L
Sbjct: 153 HRLDANSLGLLAVSAAKAGHTLYAASLIKSMLRSGYLPHVKAWSAVVSRLAASGDDGPLE 212
Query: 149 SNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGV 208
+ L +H + + A+ +PDT +N VL+AC G + + + E M+Q G
Sbjct: 213 ALKLFDSVTRRIHRFTDATLVAD-SRPDTAAYNAVLNACANLGDTKRFLQVFEEMTQLGA 271
Query: 209 VADAHSIIILAQIHEMNCQRDELKKFKCYI-DQLSTPFAHHYQQFYESLLSLHFKFDDID 267
D + ++ ++ C R + K ++ +++ SL++ + F D++
Sbjct: 272 EPDVLTYNVMIKL----CARVDRKDLLVFVLERILDKGIQLCMTTLHSLVAAYVGFGDLE 327
Query: 268 AAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKME 327
A +L+ M R+ L C + + E
Sbjct: 328 TAEKLVQAMREGRQDL-----------------------CKILRDVNSE----------- 353
Query: 328 GKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES--TLCSD 385
N +R L+ GY K G+ ++ +L +++ + S + +
Sbjct: 354 ---------NPAYAPDSRIYTTLMKGYMKEGRVTDTVRMLEAMRHQDDSTSQPDHVTYTT 404
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK-- 443
V+ AL++ G ++ A +L +M G P + TY LL Y + +A+ L+++M
Sbjct: 405 VVSALVKAGSMDRARQVLAEMTRIGVPANRVTYNILLKGYCEQLQIDKAKELVREMVDDE 464
Query: 444 --------------SCLVQNLSCEMVV---SERFSEVADKSASFTD---TSSLMDKSDLA 483
C++ + S + R +A S+T +L + LA
Sbjct: 465 GIVPDVVSYNTLIDGCILVDDSAGALAYFNEMRARGIAPTKISYTTLMKAFALSGQPKLA 524
Query: 484 ESLIQEM-REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
+ EM R+ + N + C+ ++ +A K +RM+E P V T+ L
Sbjct: 525 NKVFDEMLRDPRVKVDLVAWNMLVEAHCRLGLVEEAKKTVQRMRENGFYPNVATYGSLAN 584
Query: 543 GHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
G + + +LW ++K R + G+L +TL ++ +F + +E++ M++
Sbjct: 585 GIALARKPGEALLLWNEVKERCPDEGLL-------DTLADICVRAAFFRKALEIVACMEE 637
Query: 602 QNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
+ +K Y +++ H ++ S AR + +S+R +AF+ W G+
Sbjct: 638 NGIPPNKSKYTRIYVEMHSRMFTSKHASKARQDRRSERKRAAEAFKFWLGL 688
>gi|357155605|ref|XP_003577175.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
chloroplastic-like [Brachypodium distachyon]
Length = 725
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 139/652 (21%), Positives = 260/652 (39%), Gaps = 66/652 (10%)
Query: 38 AWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLA 97
A++ F L G P +R + L Y++ P +A DL+ ++ + + L LD +
Sbjct: 77 AYKLFAASPTLPGSPA--AASRLLAQLSYTS-PRTFPRAADLLRRL-RAEGSLGLLDANS 132
Query: 98 KLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFL----- 152
+ G L CS LL ++ ++ A + L
Sbjct: 133 LSL------------AASAAARSGHARLACSLLLSMLRRGLLPDRRAYTAAVSRLSPPSR 180
Query: 153 -IQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD 211
++L D LH ++ PDT FN L AC G + + + + M G A+
Sbjct: 181 ALRLFDAVLHHLRRTTDAPASSLPDTAAFNAALSACADAGDCRRFRRLFDEMRAWGAAAE 240
Query: 212 AHSIIILAQIHEMNCQRDELKKFKCYIDQ--LSTPFAHHYQQFYESLLSLHFKFDDIDAA 269
++ + C R K + L+ A F+ S+++ + DI AA
Sbjct: 241 PD--VVTYNVAIKMCARAGRKDLVARVLPRILAAGLAPDATTFH-SIVAAYVGLRDIPAA 297
Query: 270 GELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGK 329
++ M R L LRQ L S S + ++ +++ D E K
Sbjct: 298 EAVVQAMRDRRADL-CLLLRQ------LPSSPSSSSDADEHSHVLEDIVVGDDGQGTE-K 349
Query: 330 QELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES----TLCSD 385
L+L R +R L+ GY G+ ++ + ++++E + S +
Sbjct: 350 APLLLPRT--YPPDSRVYTTLMKGYMNAGRVDDVVAMARAMRREGETMPASKPDHVTYTT 407
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS- 444
V+ L+ G + AH +LDDM AG P TY L+ Y + +A LL++M +
Sbjct: 408 VMSTLVAAGDVGRAHALLDDMAGAGVPASRVTYNVLIKGYCQQLQMSKARELLQEMMSAD 467
Query: 445 -----------------CLVQNLSCEMVV---SERFSEVADKSASFTD---TSSLMDKSD 481
C++ + S + R VA +AS+T + +
Sbjct: 468 GGGIEPDVVTYNTLMDGCVLADDSAGALALFNEMRSRGVAPSTASYTTLMKAFAAAGQPR 527
Query: 482 LAESLIQEM-REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
+ + EM R+ A N + +C+ + A +M+E ++P V TF L
Sbjct: 528 AVQRVFDEMDRDPNAAPDRAAWNMLVEGYCQQGHLESAKAATEKMKERGVQPDVATFGSL 587
Query: 541 VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
G ++ + +LWG++K ++G L +L + L ++G +F++ +E++ M+
Sbjct: 588 AKGVAAARKPGEALVLWGEVKARRDAGELRPDEELLDALADVCVRGAFFKKALEIVACME 647
Query: 601 KQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
+ + +K YK +++ H ++ S AR + + +R +AF+ W G+
Sbjct: 648 ENGIAPNKTKYKKIYIEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 699
>gi|326502598|dbj|BAJ98927.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 733
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 121/539 (22%), Positives = 225/539 (41%), Gaps = 52/539 (9%)
Query: 153 IQLCDVFLH--LSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIM-ELMSQTGVV 209
++L D LH A S PDT FN VL AC G + + + E+ S
Sbjct: 182 LRLFDAVLHHLRRAPDSASPSFALPDTAAFNAVLSACADAGDCRRFRQLFDEMRSWPSAA 241
Query: 210 ADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAA 269
DA + + ++ +RD + + I LS+ A F+ SL++ + F DI A
Sbjct: 242 PDALTYNVAIKMCARAGRRDLVARVLERI--LSSGIAPCATTFH-SLVAAYVGFGDIPTA 298
Query: 270 GELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPE---LLEKDSILKM 326
++ M R + LR A + N G+ + ++ E +LE K
Sbjct: 299 ERIVQAMREGRSDV-CLLLRHVAVEG--------NDEKGIAVIVVDEHSDVLEDIVGPKP 349
Query: 327 EGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES----TL 382
E E+ L +S R L+ GY G+ ++ + ++++E + S
Sbjct: 350 EEGSEVPLLSRTYPPNS-RVYTTLMKGYMNAGRVDDVVAMARAMRREGETMPASRPDHVT 408
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
+ V+ L G +E AH +LD+M AG P TY L+ Y + A LL++M
Sbjct: 409 YTTVVSTLAAAGDMERAHAVLDEMARAGVPASRVTYNVLIKGYCQQLQMSRARELLEEMT 468
Query: 443 K----------------SCLVQNLSCEMVV---SERFSEVADKSASFTD---TSSLMDKS 480
C++ + S + R VA + S+T + +
Sbjct: 469 TDAGIEADVVTYNTLIDGCVLMDDSAGALALFNEMRARGVAPSTVSYTTLMKAFAASGQP 528
Query: 481 DLAESLIQEMREEAALSTIYKL-NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
+A ++ +EM ++ ++ N + +C+ M+ A + RM+E ++P V T+
Sbjct: 529 KVAHNVFEEMEKDPRVTVDRPAWNMLVEGYCQQGMLETAKQTVERMKESGVQPDVATYGS 588
Query: 540 LVYGHSSLEMYRDITILWGDIKRNIESGV------LAVSRDLYETLLLNFLQGGYFERVM 593
L G + + +LW ++K E+G L +L + L ++G +F++ +
Sbjct: 589 LAKGIAVARKPGEALLLWNEVKERCEAGSGNGKPGLRPDEELLDALADVCVRGAFFKKAL 648
Query: 594 EVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
E++ M++ + +K YK +++ H ++ S AR + + +R +AF+ W G+
Sbjct: 649 EIVACMEENGIAPNKTKYKKIYIEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 707
>gi|326522078|dbj|BAK04167.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 416
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 136/293 (46%), Gaps = 37/293 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
V++A + LG L AH ILD+M G + Y +L AY K + EA L+ ++ +
Sbjct: 135 VVNACVGLGLLNKAHSILDEMTAQGASVGLAIYSPILKAYCKEQKTAEAAQLVAEINAAG 194
Query: 446 LVQNLSCEMVVSERFSEVADKSASFT-------------DTSSLMDKSDLAE-------- 484
L + + + D ++F TS L + L E
Sbjct: 195 LQLDAGSYDALIDASMTAHDFQSAFALFKDMREARLPDLRTSYLTIMTGLTENNRPELMA 254
Query: 485 ----SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
+++ + R E A + NS I+ FCK + DA + YRRM + P +T+ L
Sbjct: 255 SFLDAVVDDPRIEIA---THDWNSIIHAFCKVGRLEDARRTYRRMLFLLYEPNNQTYLSL 311
Query: 541 VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
+ G+ S E Y + ILW +++R + +L + L ++GG+F+ M+VI +
Sbjct: 312 INGYLSAEKYFYVLILWTEVRRKGAD----FNHELIDAFLHALVKGGFFDMAMQVIEKAQ 367
Query: 601 KQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
+ ++VDK +K F++ HK +LKV+ R +++ + AF+ WAG++
Sbjct: 368 ESKIFVDKWRHKQAFMETHK----KLKVAKLRKR-NFRKMEALIAFKNWAGLN 415
>gi|449440377|ref|XP_004137961.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
chloroplastic-like [Cucumis sativus]
gi|449483612|ref|XP_004156638.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
chloroplastic-like [Cucumis sativus]
Length = 736
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 138/689 (20%), Positives = 270/689 (39%), Gaps = 119/689 (17%)
Query: 34 QVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKI-QKGKADLLQ 92
+ EAW T+ + + +P ++R ++ L Y P L +A ++ ++ Q + L
Sbjct: 79 KTDEAWITYT---QCNDLPSPTCLSRLVSQLSYQNTPSSLTRAQSILTRLRQDNQLHRLD 135
Query: 93 LDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFL 152
+ L L+++ A+A + A +++ ML LP V + + + L
Sbjct: 136 ANSLGLLAVAAAKAGHTLYACSVIKSMLRSGYLPHVKAWSAVVSRLAASPDDGPAEAIKL 195
Query: 153 IQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA 212
L L A+ + A+ +PDT +N VL+AC G+ K + E M + G D
Sbjct: 196 FSLVTQRLRRFADPTITAD-SRPDTAAYNGVLNACANMGAYEKFLQLFEEMEEFGAEPDV 254
Query: 213 HSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSL---HFKFDDIDAA 269
+ ++ ++ C R K Y+ L A +L S+ + F D++ A
Sbjct: 255 LTYNVMIKL----CARANRKDLIVYV--LEAILAKDIPMCMTTLHSVVAAYVGFGDLETA 308
Query: 270 GELIL-------------------------DMNR-----YREPLPNPKLRQDAQKPYLIS 299
+++ D+N +++ LPN D++ P L
Sbjct: 309 EKVVQAMREGKRDICRILRDGYLDEIEDVEDLNEDEDELFKKLLPNLNEEIDSEPPLLPK 368
Query: 300 IGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGK 359
I SPN +R L+ GY G+
Sbjct: 369 IYSPN---------------------------------------SRIYTTLMKGYMNEGR 389
Query: 360 NSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTT 417
+ +L +++ + S + + V+ AL++ G ++ A +L +M G P + T
Sbjct: 390 VGDTIRMLEAMRNQGDRSSHPDHVSYTTVVSALVKAGSMDRARQVLAEMTRIGCPANRIT 449
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQN--------LSCEMVVSER------FSEV 463
Y LL Y ++ +A+ L K+M ++ + ++V + F+E+
Sbjct: 450 YNILLKGYCRLLQMDKAKDLFKEMVDGAGIEPDVVSYNIMIDGSILVDDSAGALGFFNEM 509
Query: 464 ADKSASFTDTS--SLM------DKSDLAESLIQEMREEAALST-IYKLNSSIYFFCKGKM 514
K + T S +LM + LA + EM + + I N I +C+
Sbjct: 510 RSKGIAPTKVSYTTLMKAFAQSGQPKLARKVFDEMLNDPRVKVDIVAWNMLIEGYCRLGW 569
Query: 515 IGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK------RNIESG- 567
I +A ++ ++M+E P V T+ L G S + +LW ++K R +S
Sbjct: 570 IEEAKQLVQKMKENGFFPDVSTYGSLANGISLARKPGEALLLWNEVKERCAVRRGYKSDS 629
Query: 568 ----VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLY 623
L L +TL ++ +F + +E++ M++ + +K Y +++ H ++
Sbjct: 630 SSPPPLKPDEGLLDTLADICVRAAFFRKALEIVACMEENGIPPNKTKYSRIYVEMHSRMF 689
Query: 624 RRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
S AR + + ++ +AF+ W G+
Sbjct: 690 TSKHASKARQDRRIEKKRAAEAFKFWLGL 718
>gi|125527993|gb|EAY76107.1| hypothetical protein OsI_04033 [Oryza sativa Indica Group]
Length = 262
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 129/257 (50%), Gaps = 26/257 (10%)
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE 458
A ++ ++ AG +D+ +Y +L+ A F A +L K+MR++ L + + +
Sbjct: 29 AAQLVSEISAAGLQLDAGSYDALIDASMTAHDFLSAFSLFKEMREARLPDLRTSYLTIMT 88
Query: 459 RFSE--VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+E + ASF DT ++ + R E A + NS I+ FCK +
Sbjct: 89 GLTENNRPELMASFLDT------------VVDDPRIEIA---THDWNSIIHAFCKVGRLE 133
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLY 576
DA + YRRM ++ P +T+ L+ G+ S E Y + ILW +++R + +L
Sbjct: 134 DARRTYRRMVFLRYEPNNQTYLSLINGYVSAEKYFSVLILWTEVRRKGAD----FNHELI 189
Query: 577 ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQ 636
+ L ++GG+F+ M+VI ++ +++DK +K F++ HK +LKV+ R
Sbjct: 190 DAFLYALVKGGFFDMAMQVIEKAQELKIFLDKWRHKQAFMETHK----KLKVAKLRKR-N 244
Query: 637 SKRLVNVQAFRKWAGID 653
+++ + AF+ WAG++
Sbjct: 245 FRKMEALIAFKNWAGLN 261
>gi|62320586|dbj|BAD95223.1| hypothetical protein [Arabidopsis thaliana]
Length = 778
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/349 (21%), Positives = 153/349 (43%), Gaps = 40/349 (11%)
Query: 344 NRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQLGFLEAAHD 401
+R L+ GY K+G+ ++ + +L ++++ + +S + + V+ A + G ++ A
Sbjct: 414 SRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQ 473
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN--LSCEMVVS-- 457
+L +M G P + TY LL Y K AE LL++M + ++ +S +++
Sbjct: 474 VLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGC 533
Query: 458 ----------ERFSEVADKSASFTDTS--------SLMDKSDLAESLIQEMREEAALST- 498
F+E+ + + T S ++ + LA + EM + +
Sbjct: 534 ILIDDSAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVD 593
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG 558
+ N + +C+ +I DA ++ RM+E P V T+ L G S D +LW
Sbjct: 594 LIAWNMLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWK 653
Query: 559 DIKR---------------NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
+IK + +L L +TL ++ +F++ +E+I M++
Sbjct: 654 EIKERCAVKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENG 713
Query: 604 MYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
+ +K YK +++ H ++ S AR + + +R +AF+ W G+
Sbjct: 714 IPPNKTKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGL 762
>gi|15232734|ref|NP_187576.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75204290|sp|Q9SF38.1|PP222_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g09650, chloroplastic; AltName: Full=Protein HIGH
CHLOROPHYLL FLUORESCENCE 152; Flags: Precursor
gi|6682243|gb|AAF23295.1|AC016661_20 hypothetical protein [Arabidopsis thaliana]
gi|332641272|gb|AEE74793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 778
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/349 (21%), Positives = 153/349 (43%), Gaps = 40/349 (11%)
Query: 344 NRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQLGFLEAAHD 401
+R L+ GY K+G+ ++ + +L ++++ + +S + + V+ A + G ++ A
Sbjct: 414 SRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQ 473
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN--LSCEMVVS-- 457
+L +M G P + TY LL Y K AE LL++M + ++ +S +++
Sbjct: 474 VLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGC 533
Query: 458 ----------ERFSEVADKSASFTDTS--------SLMDKSDLAESLIQEMREEAALST- 498
F+E+ + + T S ++ + LA + EM + +
Sbjct: 534 ILIDDSAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVD 593
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG 558
+ N + +C+ +I DA ++ RM+E P V T+ L G S D +LW
Sbjct: 594 LIAWNMLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWK 653
Query: 559 DIKR---------------NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
+IK + +L L +TL ++ +F++ +E+I M++
Sbjct: 654 EIKERCAVKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENG 713
Query: 604 MYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
+ +K YK +++ H ++ S AR + + +R +AF+ W G+
Sbjct: 714 IPPNKTKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGL 762
>gi|297829500|ref|XP_002882632.1| HCF152 [Arabidopsis lyrata subsp. lyrata]
gi|297328472|gb|EFH58891.1| HCF152 [Arabidopsis lyrata subsp. lyrata]
Length = 772
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/349 (21%), Positives = 154/349 (44%), Gaps = 40/349 (11%)
Query: 344 NRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQLGFLEAAHD 401
+R L+ GY K+G+ ++ + +L ++++ + +S + + V+ A ++ G ++ A
Sbjct: 408 SRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVKAGLMDRARQ 467
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN--LSCEMVVS-- 457
+L +M G P + TY LL Y K AE LL++M + ++ +S +++
Sbjct: 468 VLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMAEDAGIEPDVVSYNIIIDGC 527
Query: 458 ----------ERFSEVADKSASFTDTS--------SLMDKSDLAESLIQEMREEAALST- 498
F+E+ + + T S ++ + LA + EM + +
Sbjct: 528 ILIDDSAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVD 587
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG 558
+ N + +C+ +I DA ++ RM+E P V T+ L G S + +LW
Sbjct: 588 LIAWNMLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSLARKPGEALLLWK 647
Query: 559 DIKRNIE---------------SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
+IK E +L L +TL ++ +F++ +E+I M++
Sbjct: 648 EIKERCEVKKKEAPSDSSSDPSPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENG 707
Query: 604 MYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
+ +K YK +++ H ++ S AR + + +R +AF+ W G+
Sbjct: 708 IPPNKTKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGL 756
>gi|242054089|ref|XP_002456190.1| hypothetical protein SORBIDRAFT_03g031900 [Sorghum bicolor]
gi|241928165|gb|EES01310.1| hypothetical protein SORBIDRAFT_03g031900 [Sorghum bicolor]
Length = 731
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/513 (21%), Positives = 213/513 (41%), Gaps = 58/513 (11%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
PD FN L AC G + + + + MS+ ADA + ++ ++ C R K
Sbjct: 221 PDAAAFNSALSACADAGDCRRFRQLFDAMSEWSAAADALTYNVVIKM----CARAGRKDL 276
Query: 235 KCYIDQ--LSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDA 292
+ + LS+ A F+ SL++ F DI A ++ M R
Sbjct: 277 VARVLERMLSSGLAPCATTFH-SLVAAFVGFGDIATAERIVQAMREER------------ 323
Query: 293 QKPYLISIGSPNLRCGLKLQIMPE--LLEKDSILKME---GKQELVLFRNGKLLHSNRAM 347
K + + + + C ++ E L D + E G E+ L ++ R
Sbjct: 324 -KDICLLLRAVAMDCDGATDVVEEGAALLDDIVAGSEQELGADEVPLLPKAYPPNA-RVY 381
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGES----TLCSDVIDALIQLGFLEAAHDIL 403
L+ GY G+ ++ +L ++++E + S + V+ AL+ G + AH +L
Sbjct: 382 TTLMKGYMNAGRVDDVVAVLRAMRQEARTAPASRPDHVTYTTVMSALVGAGDVARAHAVL 441
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQ-------NLSCEMVV 456
D+M G P + TY LL Y + +A L ++M +Q L V+
Sbjct: 442 DEMAADGVPANRVTYNVLLKGYCQQLQIGKARELFEEMVTDAGIQPGVVTYNTLMDGCVL 501
Query: 457 SE------------RFSEVADKSASFTD---TSSLMDKSDLAESLIQEMREEAALSTIYK 501
S+ R +A + S+T ++ + +A + +EM + ++
Sbjct: 502 SDDSAGALAFFNEMRSRGIAPSTVSYTTLMKAFAVSGQPKVAHKVFEEMERDPRVTVDRA 561
Query: 502 L-NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
N + +C+ + A ++ RM+E ++P V T+ L G + + +LW ++
Sbjct: 562 AWNMLVEGYCRLGQVETAKQVVERMKERGVQPDVATYGSLAKGVAMARKPGEALVLWNEV 621
Query: 561 K-RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHH 619
K R +E +L L ++ +F++ +E++ M+++ + +K YK +++ H
Sbjct: 622 KERCLEEA----DEELLGALADVCVRAAFFKKALEIVACMEEKGIAPNKTKYKKMYIEMH 677
Query: 620 KHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
++ S AR + + +R +AF+ W G+
Sbjct: 678 SRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 710
>gi|224138602|ref|XP_002322855.1| predicted protein [Populus trichocarpa]
gi|222867485|gb|EEF04616.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 137/668 (20%), Positives = 276/668 (41%), Gaps = 64/668 (9%)
Query: 31 KNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADL 90
+ + EAW + Q H +P ++R ++ L Y P L++A ++ +++ + L
Sbjct: 84 RQRKTEEAWVLYT--QTPH-LPPPTCLSRLVSQLSYQNTPLSLRRAQSILTRLRH-ECQL 139
Query: 91 LQLDL--LAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLA 148
+LD L L++S ++ A ++ ML LP V + G
Sbjct: 140 HRLDANSLGLLAVSATKSGQLSYAFSLINSMLRSGYLPHVKAWSAVLSRLASAPDGGPTR 199
Query: 149 SNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGV 208
+ L + ++ + A+ +PDT FN VL+AC G + E M G+
Sbjct: 200 ALKLFNTITRRVRRFSDVTMVAD-SRPDTAAFNNVLNACANLGDGKMFLKLFEEMPDFGL 258
Query: 209 VADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDA 268
D + I+ ++ C R +L F ++++ SL++ + F D++
Sbjct: 259 EPDILTYNIMIKLCA-RCNRKDLLVF--VLERVIEKGIPLCMTTLHSLVAAYVGFGDLET 315
Query: 269 AGELILDMNRYREPL----PNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSIL 324
++ M R L L + + S + + +++P L+E
Sbjct: 316 VERMVQAMREGRRDLCKILREANLEDFNEDEENEVLDSSQIGVSVFEKLLPNLVE----- 370
Query: 325 KMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES--TL 382
+ + +L + +R L+ GY K G+ ++ +L +++ + S G+
Sbjct: 371 -VSNSEPPLLPK--VFAPDSRIFTTLMKGYMKQGRVTDTVRMLEAMRCQDDSKGQPDHIT 427
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
+ VI AL++ G ++ A +L +M G P + TY LL Y + +A+ LLK+M
Sbjct: 428 YTTVISALVKAGSMDPARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLKEMA 487
Query: 443 K----------------SCLVQNLSCEMVVSERFSEVADKSASFTDTS--------SLMD 478
C++ + S + F+E+ K T S +L
Sbjct: 488 DDVNIEPDVVSYNTLIDGCILVDDSAGALAF--FNEMRTKGIMPTKISYTTLMKAFALSG 545
Query: 479 KSDLAESLIQEMREEAAL-STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
+ LA + EM ++ + + + N + +C+ ++ +A + +RM+E P V T+
Sbjct: 546 QPKLANKVFDEMLKDPRVKADLVAWNMLLEGYCRLGLVDEAKTVIQRMKENGFHPDVATY 605
Query: 538 YYLVYGHSSLEMYRDITILWGDIKR-----------NIESGVLAVSRD--LYETLLLNFL 584
L G S + +LW ++K N +S +L + D L TL +
Sbjct: 606 GSLANGISLARKPGEALLLWKEVKERWEVKGEGESSNSDSPLLPLKPDEELLATLADICV 665
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQ 644
+ +F++ +E++ M++ + +K YK +++ H ++ S AR + + +R +
Sbjct: 666 RAAFFQKALEIVACMEENGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAE 725
Query: 645 AFRKWAGI 652
AF+ W G+
Sbjct: 726 AFKFWLGL 733
>gi|255568420|ref|XP_002525184.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535481|gb|EEF37150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 740
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 140/654 (21%), Positives = 267/654 (40%), Gaps = 67/654 (10%)
Query: 51 IPERHVVNRFITDLCYSAEPHWLQKACDLVLKI-QKGKADLLQLDLLAKLSLSLARAQMP 109
+P ++R ++ L Y P L +A ++ ++ Q+ + L + L L++S ++
Sbjct: 86 LPNPTCLSRLVSQLSYQNTPLSLSRAQSILTRLRQERQLHRLDANSLGLLAVSATKSGQL 145
Query: 110 VPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLS--AEKS 167
A ++ ML LP V + + + Q +F ++ +
Sbjct: 146 SYAVSLINSMLRSGYLPHVKAWSAVISRLSSS------PDDGPQQAIKLFNSITRRVRRF 199
Query: 168 NGAELI---KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEM 224
N A L+ PDT FN VL+AC G + + MS+ G D + ++ ++
Sbjct: 200 NDAALVADSNPDTAAFNSVLNACANLGDGKMFLQLFDQMSEFGAEPDILTYNVMIKLCA- 258
Query: 225 NCQRDELKKFKC-YIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPL 283
C R +L F + Q P SL++ + F D++ A + M R L
Sbjct: 259 RCDRKDLLVFVLERVIQKRIPLC---MTTLHSLVAAYVGFGDLETAEIMAQAMREGRRDL 315
Query: 284 PNPKLRQDAQKPYLISIG------SPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRN 337
K+ ++ L G S L K + E L +SI G E L
Sbjct: 316 C--KILREVNMEDLGYYGEDVIENSQRLDQNRKNMFVFEKLLPNSI--QSGDTEPSLLPK 371
Query: 338 GKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIK--KEHHSFGESTLCSDVIDALIQLGF 395
S R L+ GY G+ S+ +L +++ ++ S + + VI AL++ G
Sbjct: 372 VYAPDS-RIYTTLMKGYMNQGRVSDTIRMLEAMRHQDDNASHPDHVSYTTVISALVKAGS 430
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN--LSCE 453
++ A +L +M G P + TY LL + + +A+ LLK+M ++ ++ +S
Sbjct: 431 MDRARQVLAEMTRIGVPANRITYNILLKGHCQHLQIDKAKELLKEMDENAEIEPDVVSYN 490
Query: 454 MVVS------------ERFSEVADKSASFTDTS--------SLMDKSDLAESLIQEMREE 493
++ F+E+ +K + T S SL + LA + EM ++
Sbjct: 491 TMIDGCIQVDDSAGALAFFNEMREKGIAPTKISYTTLMKAFSLSGQPKLANQVFDEMFKD 550
Query: 494 AALST-IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+ + N + +CK ++ A KI +RM+E P V T+ L G + +
Sbjct: 551 PRVKVDLIAWNVLVEAYCKLGLVEQAKKIIQRMKENGFHPNVATYGSLASGIALARKPGE 610
Query: 553 ITILWGDIKRNIE--------------SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGY 598
ILW ++K +E + +TL ++ F++ +E++
Sbjct: 611 ALILWNEVKERLEMQKEGHNSKSDLPPPPAFKPDEGMLDTLADICVRAALFQKALEIVAC 670
Query: 599 MKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
M++ ++ +K+ YK +++ H ++ S AR + + +R +AF+ W G+
Sbjct: 671 MEENGIFPNKMKYKKIYVEMHSRMFTSKHASQARVDRRRERKRAAEAFKFWLGL 724
>gi|302797571|ref|XP_002980546.1| hypothetical protein SELMODRAFT_113055 [Selaginella moellendorffii]
gi|300151552|gb|EFJ18197.1| hypothetical protein SELMODRAFT_113055 [Selaginella moellendorffii]
Length = 636
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+++ N I + K K+IGDA ++ RM ++P +++Y+V G + D+ LW
Sbjct: 434 SLFSWNLVIEYCSKKKLIGDAQRMLARMAPAGVQPDSYSYWYVVKGLITRSRLTDVLGLW 493
Query: 558 GDIK---RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSE 614
I+ R + + + L ETL+ F++G F + +E++ Y K++++ +D+ +K
Sbjct: 494 PQIQFASRRDRPNRIILHKQLVETLMYAFVKGANFAQALELLEYAKEEDIPLDREAFKDL 553
Query: 615 FLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKW 649
FLK+H H + S R + ++L+ ++ F+KW
Sbjct: 554 FLKYHSHRFTSKHKSPLRVYGRQQQLLEMEEFKKW 588
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 82/216 (37%), Gaps = 29/216 (13%)
Query: 43 NDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLK-IQKGKADLLQLDLLAKLSL 101
+ +R P R ++ I+ L Y P L +A L+ + + DLL + L+ L+L
Sbjct: 22 DGLRRKGSFPSRDSLSTLISQLAYKQTPLSLSQADRLIQDLVASRREDLLDQNSLSLLAL 81
Query: 102 SLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLH 161
+ A M + LRLM P + V V E +A +I+L D +
Sbjct: 82 AYAGVGMANFSRSTLRLMFQTGLYPPVRVWTAVMV-----EEPDPVAR--IIKLMDFAMM 134
Query: 162 LSAEKSNGAELI--KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILA 219
K N L+ +PD FN L C + + I MS GV+ ++ S +L
Sbjct: 135 ---PKGNEELLVSMRPDVTSFNSALRICATLADTQNAEEIFHSMSLFGVLPNSDSFELLI 191
Query: 220 QIH----------------EMNCQRDELKKFKCYID 239
+++ E C R K ID
Sbjct: 192 KVYGKARRFDLFRKVPQRMEAACVRPSASTLKALID 227
>gi|302790097|ref|XP_002976816.1| hypothetical protein SELMODRAFT_105853 [Selaginella moellendorffii]
gi|300155294|gb|EFJ21926.1| hypothetical protein SELMODRAFT_105853 [Selaginella moellendorffii]
Length = 636
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+++ N I + K K+IGDA ++ RM ++P +++Y+V G + D+ LW
Sbjct: 434 SLFSWNLVIEYCSKKKLIGDAQRMLARMAPAGVQPDSYSYWYVVKGLITRSRLTDVLGLW 493
Query: 558 GDIK---RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSE 614
I+ R + + + L ETL+ F++G F + +E++ Y K++++ +D+ +K
Sbjct: 494 PQIQFASRRDRPNRIILHKQLVETLMYAFVKGANFAQALELLEYAKEEDIPLDREAFKDL 553
Query: 615 FLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKW 649
FLK+H H + S R + ++L+ ++ F+KW
Sbjct: 554 FLKYHSHRFTSKHKSPLRVYGRQQQLLEMEEFKKW 588
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 13/183 (7%)
Query: 43 NDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLK-IQKGKADLLQLDLLAKLSL 101
+ +R P R ++ I+ L Y P L +A L+ + + DLL + L+ L+L
Sbjct: 22 DGLRRKGSFPSRDSLSTLISQLAYKQTPLSLSQADRLIQDLVASRREDLLDQNSLSLLAL 81
Query: 102 SLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLH 161
+ A M + LRLM P + V V E +A +I+L D +
Sbjct: 82 AYAGVGMANFSRSTLRLMFQTGLYPSVRVWTAVMV-----EEPDPVAR--IIKLMDFAMM 134
Query: 162 LSAEKSNGAELI--KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILA 219
K N L+ +PD FN L C + + I MS GV+ ++ S +L
Sbjct: 135 ---PKGNEELLVSMRPDVTSFNSALRICATLADTQNAEEIFHSMSLFGVLPNSDSFELLI 191
Query: 220 QIH 222
+++
Sbjct: 192 KVY 194
>gi|77552783|gb|ABA95579.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 697
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 109/509 (21%), Positives = 208/509 (40%), Gaps = 60/509 (11%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
PDT FN L AC G ++ +H+ + M DA + +L ++ ++D + +
Sbjct: 201 PDTAAFNAALSACANAGDCIRFRHLFDQMPAWNAPPDALTYNVLIKMCARAGRKDLVARV 260
Query: 235 KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQK 294
I LS+ F+ SL++ + F DI A ++ M R + L +
Sbjct: 261 LHRI--LSSGLTPCATTFH-SLVAAYVGFGDIPTAERIVQAMRERRTDIC--LLFRAVAD 315
Query: 295 PYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGY 354
++IS + C L + I+K ++E+ L +S R L+ GY
Sbjct: 316 DHIISHDQQS--CVL-----------EDIVKPWEQEEVPLLPKAYPPNS-RVYTTLMKGY 361
Query: 355 KKHGKNSELSWLLLSIKKEHHSFGESTLCS--------DVIDALIQLGFLEAAHDILDDM 406
G+ ++ +L ++++E GE++ S VI L+ G +E A +L++M
Sbjct: 362 MNAGRVEDVVAMLRAMRRE----GETSPASRPDHVTYTTVISTLVAAGDMERARAVLEEM 417
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALL----------------KQMRKSCLVQNL 450
AG TY L+ Y + +A+ LL + C++ +
Sbjct: 418 GQAGVAASRVTYNVLIKGYCQQLQAGKAKELLAVDMAEAGIQPDVVTYNTLIDGCVLTDD 477
Query: 451 SCEMVV---SERFSEVADKSASFTDTSSLMDKSD---LAESLIQEMREEAALST-IYKLN 503
S V R +A + S+T S LA + EM ++ ++ N
Sbjct: 478 SAGAVALFNEMRERGIAPSAVSYTTLMKAFAASGQPKLAHKVFDEMEKDPRVAVDRAAWN 537
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ +C+ ++ A K+ RM+ ++P V T+ L G + + +LW +IK
Sbjct: 538 MLVEAYCRLGLLESAKKVVERMKARGVQPDVATYGSLAKGIAVARRPGEALLLWEEIKEK 597
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLY 623
G ++ E L ++ F + +E++ M++ + +K YK ++ H ++
Sbjct: 598 EVDG------EVVEALADVCVRAALFRKALEMVARMEEMGVEPNKAKYKRMYVDLHSRMF 651
Query: 624 RRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
S AR + + +R +AF+ W G+
Sbjct: 652 TSKHASQARQDRRRERKRAAEAFKFWLGL 680
>gi|115486864|ref|NP_001065238.1| Os12g0102600 [Oryza sativa Japonica Group]
gi|113648426|dbj|BAF28938.1| Os12g0102600, partial [Oryza sativa Japonica Group]
Length = 712
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 109/509 (21%), Positives = 208/509 (40%), Gaps = 60/509 (11%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
PDT FN L AC G ++ +H+ + M DA + +L ++ ++D + +
Sbjct: 216 PDTAAFNAALSACANAGDCIRFRHLFDQMPAWNAPPDALTYNVLIKMCARAGRKDLVARV 275
Query: 235 KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQK 294
I LS+ F+ SL++ + F DI A ++ M R + L +
Sbjct: 276 LHRI--LSSGLTPCATTFH-SLVAAYVGFGDIPTAERIVQAMRERRTDIC--LLFRAVAD 330
Query: 295 PYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGY 354
++IS + C L + I+K ++E+ L +S R L+ GY
Sbjct: 331 DHIISHDQQS--CVL-----------EDIVKPWEQEEVPLLPKAYPPNS-RVYTTLMKGY 376
Query: 355 KKHGKNSELSWLLLSIKKEHHSFGESTLCS--------DVIDALIQLGFLEAAHDILDDM 406
G+ ++ +L ++++E GE++ S VI L+ G +E A +L++M
Sbjct: 377 MNAGRVEDVVAMLRAMRRE----GETSPASRPDHVTYTTVISTLVAAGDMERARAVLEEM 432
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALL----------------KQMRKSCLVQNL 450
AG TY L+ Y + +A+ LL + C++ +
Sbjct: 433 GQAGVAASRVTYNVLIKGYCQQLQAGKAKELLAVDMAEAGIQPDVVTYNTLIDGCVLTDD 492
Query: 451 SCEMVV---SERFSEVADKSASFTDTSSLMDKSD---LAESLIQEMREEAALSTIYKL-N 503
S V R +A + S+T S LA + EM ++ ++ N
Sbjct: 493 SAGAVALFNEMRERGIAPSAVSYTTLMKAFAASGQPKLAHKVFDEMEKDPRVAVDRAAWN 552
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ +C+ ++ A K+ RM+ ++P V T+ L G + + +LW +IK
Sbjct: 553 MLVEAYCRLGLLESAKKVVERMKARGVQPDVATYGSLAKGIAVARRPGEALLLWEEIKEK 612
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLY 623
G ++ E L ++ F + +E++ M++ + +K YK ++ H ++
Sbjct: 613 EVDG------EVVEALADVCVRAALFRKALEMVARMEEMGVEPNKAKYKRMYVDLHSRMF 666
Query: 624 RRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
S AR + + +R +AF+ W G+
Sbjct: 667 TSKHASQARQDRRRERKRAAEAFKFWLGL 695
>gi|115483719|ref|NP_001065521.1| Os11g0103000 [Oryza sativa Japonica Group]
gi|77548314|gb|ABA91111.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113644225|dbj|BAF27366.1| Os11g0103000 [Oryza sativa Japonica Group]
Length = 543
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 107/505 (21%), Positives = 205/505 (40%), Gaps = 52/505 (10%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
PDT FN L AC G ++ +H+ + M DA + +L ++ ++D + +
Sbjct: 47 PDTAAFNAALSACADAGDCIRFRHLFDQMPAWNAPPDALTYNVLIKMCARAGRKDLVARV 106
Query: 235 KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQK 294
I LS+ F+ SL++ + F DI A ++ M R + L +
Sbjct: 107 LHRI--LSSGLTPCATTFH-SLVAAYVGFGDIPTAERIVQAMRERRTDIC--LLFRAVAD 161
Query: 295 PYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGY 354
++IS + C L + I+K + E+ L +S R L+ GY
Sbjct: 162 DHIISHDQQS--CVL-----------EDIVKPWEQDEVPLLPKAYPPNS-RVYTTLMKGY 207
Query: 355 KKHGKNSELSWLLLSIKKEHHSFGES----TLCSDVIDALIQLGFLEAAHDILDDMELAG 410
G+ ++ +L ++++E + S + VI L+ G +E A +L++M AG
Sbjct: 208 MNAGRVEDVVAMLRAMRREGETSPASRPDHVTYTTVISTLVAAGDMERARAVLEEMGQAG 267
Query: 411 HPMDSTTYKSLLTAYYKVKMFREAEALL----------------KQMRKSCLVQNLSCEM 454
TY L+ Y + +A+ LL + C++ + S
Sbjct: 268 VAASRVTYNVLIKGYCQQLQAGKAKELLAVDMAEAGIQPDVVTYNTLIDGCVLTDDSAGA 327
Query: 455 VV---SERFSEVADKSASFTDTSSLMDKSD---LAESLIQEMREEAALST-IYKLNSSIY 507
V R +A + S+T S LA + EM ++ ++ N +
Sbjct: 328 VALFNEMRERGIAPSAVSYTTLMKAFAASGQPKLAHKVFDEMEKDPRVAVDRAAWNMLVE 387
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESG 567
+C+ ++ A K+ RM+ ++P V T+ L G + + +LW +IK G
Sbjct: 388 AYCRLGLLESAKKVVERMKARGVQPDVATYGSLAKGIAVARRPGEALLLWEEIKEKEVDG 447
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLK 627
++ E L ++ F + +E++ M++ + +K YK ++ H ++
Sbjct: 448 ------EVVEALADVCVRAALFRKALEMVARMEEMGVEPNKAKYKRMYVDLHSRMFTSKH 501
Query: 628 VSNARTEAQSKRLVNVQAFRKWAGI 652
S AR + + +R +AF+ W G+
Sbjct: 502 ASQARQDRRRERKRAAEAFKFWLGL 526
>gi|296080897|emb|CBI18829.3| unnamed protein product [Vitis vinifera]
Length = 78
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 45/68 (66%)
Query: 4 SSSVQQEKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITD 63
S S Q E + WEGS VLLRKLE A K+HQ EAWETF D +RL+G P + R IT+
Sbjct: 11 SISSQPELICWEGSCHAVLLRKLEIALKDHQGDEAWETFEDIKRLYGFPSHSLATRLITE 70
Query: 64 LCYSAEPH 71
L YS+ PH
Sbjct: 71 LSYSSNPH 78
>gi|125535459|gb|EAY81947.1| hypothetical protein OsI_37125 [Oryza sativa Indica Group]
Length = 697
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 109/509 (21%), Positives = 207/509 (40%), Gaps = 60/509 (11%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
PDT FN L AC G ++ +H+ + M DA + +L ++ ++D + +
Sbjct: 201 PDTAAFNAALSACADAGDCIRFRHLFDQMPAWNAPPDALTYNVLIKMCARAGRKDLVARV 260
Query: 235 KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQK 294
I LS+ F+ SL++ + F DI A ++ M R + L +
Sbjct: 261 LHRI--LSSGLTPCATTFH-SLVAAYVGFGDIPTAERIVQAMRERRTDIC--LLFRAVAD 315
Query: 295 PYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGY 354
++IS + C L + I+K + E+ L +S R L+ GY
Sbjct: 316 DHIISHDQQS--CVL-----------EDIVKPWEQDEVPLLPKAYPPNS-RVYTTLMKGY 361
Query: 355 KKHGKNSELSWLLLSIKKEHHSFGESTLCS--------DVIDALIQLGFLEAAHDILDDM 406
G+ ++ +L ++++E GE++ S VI L+ G +E A +L++M
Sbjct: 362 MNAGRVEDVVAMLRAMRRE----GETSPASRPDHVTYTTVISTLVAAGDMERARAVLEEM 417
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALL----------------KQMRKSCLVQNL 450
AG TY L+ Y + +A+ LL + C++ +
Sbjct: 418 GQAGVAASRVTYNVLIKGYCQQLQAGKAKELLAVDMAEAGIQPDVVTYNTLIDGCVLTDD 477
Query: 451 SCEMVV---SERFSEVADKSASFTDTSSLMDKSD---LAESLIQEMREEAALST-IYKLN 503
S V R +A + S+T S LA + EM ++ ++ N
Sbjct: 478 SAGAVALFNEMRERGIAPSAVSYTTLMKAFAASGQPKLAHKVFDEMEKDPRVAVDRAAWN 537
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ +C+ ++ A K+ RM+ ++P V T+ L G + + +LW +IK
Sbjct: 538 MLVEAYCRLGLLESAKKVVERMKARGVQPDVATYGSLAKGIAVARRPGEALLLWEEIKEK 597
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLY 623
G ++ E L ++ F + +E++ M++ + +K YK ++ H ++
Sbjct: 598 EVDG------EVVEALADVCVRAALFRKALEMVARMEEMGVEPNKAKYKRMYVDLHSRMF 651
Query: 624 RRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
S AR + + +R +AF+ W G+
Sbjct: 652 TSKHASQARQDRRRERKRAAEAFKFWLGL 680
>gi|357516655|ref|XP_003628616.1| hypothetical protein MTR_8g062650 [Medicago truncatula]
gi|355522638|gb|AET03092.1| hypothetical protein MTR_8g062650 [Medicago truncatula]
Length = 190
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 84/192 (43%), Gaps = 61/192 (31%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+ +AHDILDD E AG PM Y +AY K M REA+A LKQM+K L + LS +
Sbjct: 60 INSAHDILDDAEAAGSPMGFNMYILHSSAYQKEGMQREAKARLKQMKKINLQKELSDNAI 119
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
DK + +T + + KS+LA +L Q +++E
Sbjct: 120 ---------DKHTPYEETLNSVGKSNLAITLAQVLKDE---------------------- 148
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL 575
TV T L LWG IKR ++ L V+RDL
Sbjct: 149 ---------------NQTVITLTML---------------LWGGIKRFTKNNYLVVNRDL 178
Query: 576 YETLLLNFLQGG 587
YE LLLNF++GG
Sbjct: 179 YELLLLNFIRGG 190
>gi|414880874|tpg|DAA58005.1| TPA: hypothetical protein ZEAMMB73_979671 [Zea mays]
Length = 730
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 102/524 (19%), Positives = 217/524 (41%), Gaps = 59/524 (11%)
Query: 166 KSNGAELIKP----DTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQI 221
+S EL+ P D FN L AC G + + + + MS+ ADA + ++ ++
Sbjct: 208 RSAPPELVSPSCLPDAAAFNAALSACADAGDCRRFRQLFDAMSEWSAAADALTYNVVIKM 267
Query: 222 HEMNCQRDELKKF--KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRY 279
++D + + + L TP A + SL++ F DI A ++ M
Sbjct: 268 CARAGRKDLVARVLERMLFSGL-TPCATTFH----SLVAAFVGFGDIATAERIVQAMREE 322
Query: 280 REPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSIL----KMEGKQELVLF 335
R K + + + ++ C + + D I+ + +G E+ L
Sbjct: 323 R-------------KDICLLLRAVSMDCDGVTDVEEGAVLLDDIVAGAKQGQGSDEVPLL 369
Query: 336 RNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES----TLCSDVIDALI 391
++ R L+ GY G+ ++ +L ++++E + S + VI AL+
Sbjct: 370 PKAYPPNA-RVYTTLMKGYTNAGRVDDVLAVLRAMRQEAQTAPASRPDHVTYTTVISALV 428
Query: 392 QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM---------- 441
G + A +L++M A P + TY LL Y + +A L ++M
Sbjct: 429 GAGDMARARAVLNEMAAARVPANRVTYNVLLKGYCQQLQIGQARELFEEMVTDAGIQPGV 488
Query: 442 ------RKSCLVQNLSCEMVV---SERFSEVADKSASFTD---TSSLMDKSDLAESLIQE 489
C++ + S + R +A + S+T ++ + +A + +E
Sbjct: 489 VTYNTLMDGCVLTDDSAGALAFFNEMRSRGIAPSTVSYTTLMKAFAVSGQPKVAHKVFEE 548
Query: 490 MREEAALSTIYKL-NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548
M + ++ N + +C+ ++ A ++ RM+E ++P V T+ + G +
Sbjct: 549 MERDPRVTVDRAAWNMLVEGYCRLGLVETAKQVVERMKERGVQPDVATYGSMAKGIAVAR 608
Query: 549 MYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDK 608
+ +LW ++K E + +L L ++ +F++ +E++ M+++ + +K
Sbjct: 609 KPGEALVLWNEVK---ERCLKEADEELLGALADVCVRAAFFKKALEIVACMEEKGIAPNK 665
Query: 609 LMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
YK +++ H ++ S AR + + +R +AF+ W G+
Sbjct: 666 TKYKKMYIEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 709
>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 724
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 28/285 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+NG K G+ L I K S + + +I + G L+ A +L DM +
Sbjct: 322 LMNGLCKIGRVDAAKDLFYRIPKP-----TSVIFNTLIHGFVTHGRLDDAKAVLSDMVTS 376
Query: 410 -GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G D TY SL+ Y+K + A +L+ MR N+ ++ + F ++
Sbjct: 377 YGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLG---- 432
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
K D A +L+ EM + N I FCK I +A++I+R M
Sbjct: 433 ----------KIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK 482
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588
+P V TF L+ G ++ + L D+ I GV+A + Y TL+ FL+ G
Sbjct: 483 GCKPDVYTFNSLISGLCEVDEIKHALWLLRDM---ISEGVVA-NTVTYNTLINAFLRRGE 538
Query: 589 FERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNART 633
+ +++ M Q +D++ Y S K L R +V AR+
Sbjct: 539 IKEARKLVNEMVFQGSLLDEITYNSLI----KGLCRAGEVDKARS 579
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 23/181 (12%)
Query: 365 WLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424
WLL + E + + +I+A ++ G ++ A ++++M G +D TY SL+
Sbjct: 509 WLLRDMISEG-VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKG 567
Query: 425 YYKVKMFREAEALLKQMRKSCLV-QNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLA 483
+ +A +L ++M + LV ++SC ++++ + +S +
Sbjct: 568 LCRAGEVDKARSLFEKMLRDGLVPSSISCNILING------------------LCRSGMV 609
Query: 484 ESLIQ---EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
E ++ EM + I NS I C+ I D L ++R++Q I P T+ L
Sbjct: 610 EEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTL 669
Query: 541 V 541
+
Sbjct: 670 M 670
>gi|222616460|gb|EEE52592.1| hypothetical protein OsJ_34898 [Oryza sativa Japonica Group]
Length = 675
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 103/510 (20%), Positives = 197/510 (38%), Gaps = 84/510 (16%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
PDT FN L AC G ++ +H+ + M DA + +L ++ ++D + +
Sbjct: 201 PDTAAFNAALSACANAGDCIRFRHLFDQMPAWNAPPDALTYNVLIKMCARAGRKDLVARV 260
Query: 235 KCYI-DQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQ 293
I S P HH + + + L F+ A + I+ ++ L +D
Sbjct: 261 LHRILSSGSHPLRHHAMRERRTDICLLFRA----VADDHIISHDQQSCVL------EDIV 310
Query: 294 KPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLING 353
KP+ +QE V ++R L+ G
Sbjct: 311 KPW--------------------------------EQEEVPLLPKAYPPNSRVYTTLMKG 338
Query: 354 YKKHGKNSELSWLLLSIKKEHHSFGESTLCS--------DVIDALIQLGFLEAAHDILDD 405
Y G+ ++ +L ++++E GE++ S VI L+ G +E A +L++
Sbjct: 339 YMNAGRVEDVVAMLRAMRRE----GETSPASRPDHVTYTTVISTLVAAGDMERARAVLEE 394
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALL----------------KQMRKSCLVQN 449
M AG TY L+ Y + +A+ LL + C++ +
Sbjct: 395 MGQAGVAASRVTYNVLIKGYCQQLQAGKAKELLAVDMAEAGIQPDVVTYNTLIDGCVLTD 454
Query: 450 LSCEMVV---SERFSEVADKSASFTDTSSLMDKSD---LAESLIQEMREEAALST-IYKL 502
S V R +A + S+T S LA + EM ++ ++
Sbjct: 455 DSAGAVALFNEMRERGIAPSAVSYTTLMKAFAASGQPKLAHKVFDEMEKDPRVAVDRAAW 514
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
N + +C+ ++ A K+ RM+ ++P V T+ L G + + +LW +IK
Sbjct: 515 NMLVEAYCRLGLLESAKKVVERMKARGVQPDVATYGSLAKGIAVARRPGEALLLWEEIKE 574
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHL 622
G ++ E L ++ F + +E++ M++ + +K YK ++ H +
Sbjct: 575 KEVDG------EVVEALADVCVRAALFRKALEMVARMEEMGVEPNKAKYKRMYVDLHSRM 628
Query: 623 YRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
+ S AR + + +R +AF+ W G+
Sbjct: 629 FTSKHASQARQDRRRERKRAAEAFKFWLGL 658
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 106/223 (47%), Gaps = 15/223 (6%)
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
L R+ + LI+G K G+ E S + ++K++ + ++ + V+D + G L+ A
Sbjct: 562 FLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFAL-DARAYNAVVDGFCKSGKLDKA 620
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
+++L++M++ P TY S++ K+ EA L ++ + + N+ +V S
Sbjct: 621 YEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNV---IVYS-- 675
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
S D + + D A +++EM ++ +Y NS + K + I +AL
Sbjct: 676 ---------SLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEAL 726
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
++ M+EMK P T+ L+ G ++ Y + W ++++
Sbjct: 727 ICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQK 769
>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g64320, mitochondrial; Flags: Precursor
gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 730
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 120/285 (42%), Gaps = 28/285 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+NG K G+ L I K E + + +I + G L+ A +L DM +
Sbjct: 328 LMNGLCKIGRVDAAKDLFYRIPKP-----EIVIFNTLIHGFVTHGRLDDAKAVLSDMVTS 382
Query: 410 -GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G D TY SL+ Y+K + A +L MR N+ ++ + F ++
Sbjct: 383 YGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLG---- 438
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
K D A +++ EM + N I FCK I +A++I+R M
Sbjct: 439 ----------KIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK 488
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588
+P V TF L+ G ++ + L D+ I GV+A + Y TL+ FL+ G
Sbjct: 489 GCKPDVYTFNSLISGLCEVDEIKHALWLLRDM---ISEGVVA-NTVTYNTLINAFLRRGE 544
Query: 589 FERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNART 633
+ +++ M Q +D++ Y S K L R +V AR+
Sbjct: 545 IKEARKLVNEMVFQGSPLDEITYNSLI----KGLCRAGEVDKARS 585
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 23/181 (12%)
Query: 365 WLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424
WLL + E + + +I+A ++ G ++ A ++++M G P+D TY SL+
Sbjct: 515 WLLRDMISEG-VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKG 573
Query: 425 YYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLA 483
+ +A +L ++M R N+SC ++++ + +S +
Sbjct: 574 LCRAGEVDKARSLFEKMLRDGHAPSNISCNILING------------------LCRSGMV 615
Query: 484 ESLIQ---EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
E ++ EM + I NS I C+ I D L ++R++Q I P TF L
Sbjct: 616 EEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTL 675
Query: 541 V 541
+
Sbjct: 676 M 676
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 98/440 (22%), Positives = 182/440 (41%), Gaps = 66/440 (15%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA---HSIIILAQIHEMNCQRD 229
+KP+ +++ ++ A + G + + I+E M + G++ D +S+II C+
Sbjct: 447 LKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGF------CKAK 500
Query: 230 ELKKFKCYIDQLST----PFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPN 285
+++ + Y+ ++ P AH Y F D AGE+ + + E L
Sbjct: 501 RMEEARTYLMEMLERRLRPNAHTYGAF----------IDGYSKAGEMEIADRYFNEMLSC 550
Query: 286 PKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELV--LFRNGK---- 339
L LI + +L + + ++ L+ L RNGK
Sbjct: 551 GVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEA 610
Query: 340 -----------LLHSNRAMAKLINGYKKHGKNSELSWLL--LSIKKEHHSFGESTLCSDV 386
LL + LI+G K G + S LL + IK + + +
Sbjct: 611 FGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNI---L 667
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREA-----EALLKQM 441
ID L + G +E A ++ DD+E G + TY +++ Y K K A E LL+ +
Sbjct: 668 IDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGV 727
Query: 442 RKSCLVQNLSCEMVVSER--------FSEVADKS-ASFTDTSSLMD------KSDLAESL 486
+ N+ E F E+ +K AS ++L++ K A L
Sbjct: 728 PPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHL 787
Query: 487 IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546
++EM E+ + S I CK M+G+A +++ MQE + PT +T+ L++G+ +
Sbjct: 788 LEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHN 847
Query: 547 LEMYRDITILWGD-IKRNIE 565
+ +++ L+ + + + IE
Sbjct: 848 IGNMSEVSALFEEMVAKGIE 867
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 94/218 (43%), Gaps = 24/218 (11%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI G+ + G+N ++ LL K+ S +I+ L + G L+ + IL +M +
Sbjct: 387 LIEGHCR-GQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMN 445
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC----------------- 452
G ++ Y +L+TA+ K E+ +L++MR+ ++ ++ C
Sbjct: 446 GLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEA 505
Query: 453 -----EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIY 507
EM+ R A +F D S + ++A+ EM L + + I
Sbjct: 506 RTYLMEML-ERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIE 564
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
CK + +A ++R + ++ V+T+ L++G S
Sbjct: 565 GHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLS 602
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG-ESTLC--SDVIDALIQLGFLEAAHDILDDM 406
LI+G+ + G + IK E + G E+ L + +++ + + G +E A +I+ +M
Sbjct: 317 LIDGFMRQGDIEQA----FRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM 372
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD- 465
G DS TY L+ + + + A LL +M+K L + V+ +
Sbjct: 373 MEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNL 432
Query: 466 -----------------KSASFTDTSSLMDKSDLAES---LIQEMREEAALSTIYKLNSS 505
+ +T + K E +++ MRE+ L ++ NS
Sbjct: 433 QGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSL 492
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
I FCK K + +A M E ++RP T+ + G+S
Sbjct: 493 IIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYS 532
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 98/440 (22%), Positives = 182/440 (41%), Gaps = 66/440 (15%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA---HSIIILAQIHEMNCQRD 229
+KP+ +++ ++ A + G + + I+E M + G++ D +S+II C+
Sbjct: 456 LKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGF------CKAK 509
Query: 230 ELKKFKCYIDQLST----PFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPN 285
+++ + Y+ ++ P AH Y F D AGE+ + + E L
Sbjct: 510 RMEEARTYLMEMLERRLRPNAHTYGAF----------IDGYSKAGEMEIADRYFNEMLSC 559
Query: 286 PKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELV--LFRNGK---- 339
L LI + +L + + ++ L+ L RNGK
Sbjct: 560 GVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEA 619
Query: 340 -----------LLHSNRAMAKLINGYKKHGKNSELSWLL--LSIKKEHHSFGESTLCSDV 386
LL + LI+G K G + S LL + IK + + +
Sbjct: 620 FGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNI---L 676
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREA-----EALLKQM 441
ID L + G +E A ++ DD+E G + TY +++ Y K K A E LL+ +
Sbjct: 677 IDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGV 736
Query: 442 RKSCLVQNLSCEMVVSER--------FSEVADKS-ASFTDTSSLMD------KSDLAESL 486
+ N+ E F E+ +K AS ++L++ K A L
Sbjct: 737 PPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHL 796
Query: 487 IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546
++EM E+ + S I CK M+G+A +++ MQE + PT +T+ L++G+ +
Sbjct: 797 LEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHN 856
Query: 547 LEMYRDITILWGD-IKRNIE 565
+ +++ L+ + + + IE
Sbjct: 857 IGNMSEVSALFEEMVAKGIE 876
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 94/218 (43%), Gaps = 24/218 (11%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI G+ + G+N ++ LL K+ S +I+ L + G L+ + IL +M +
Sbjct: 396 LIEGHCR-GQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMN 454
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC----------------- 452
G ++ Y +L+TA+ K E+ +L++MR+ ++ ++ C
Sbjct: 455 GLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEA 514
Query: 453 -----EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIY 507
EM+ R A +F D S + ++A+ EM L + + I
Sbjct: 515 RTYLMEML-ERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIE 573
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
CK + +A ++R + ++ V+T+ L++G S
Sbjct: 574 GHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLS 611
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG-ESTLC--SDVIDALIQLGFLEAAHDILDDM 406
LI+G+ + G + IK E + G E+ L + +++ + + G +E A +I+ +M
Sbjct: 326 LIDGFMRQGDIEQA----FRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM 381
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD- 465
G DS TY L+ + + + A LL +M+K L + V+ +
Sbjct: 382 MEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNL 441
Query: 466 -----------------KSASFTDTSSLMDKSDLAES---LIQEMREEAALSTIYKLNSS 505
+ +T + K E +++ MRE+ L ++ NS
Sbjct: 442 QGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSL 501
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
I FCK K + +A M E ++RP T+ + G+S
Sbjct: 502 IIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYS 541
>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12775, mitochondrial; Flags: Precursor
gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
multiple PPR PF|01535 repeats. EST gb|AI999079 comes
from this gene [Arabidopsis thaliana]
gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 644
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 113/260 (43%), Gaps = 47/260 (18%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID L + G L+ A ++ ++ME+ G D TY +L+ + + + LL+ M K
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ N VV+ FS + D SF L + A+ L++EM + N
Sbjct: 327 RKISPN-----VVT--FSVLID---SFVKEGKLRE----ADQLLKEMMQRGIAPNTITYN 372
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH-------SSLEMYRDITIL 556
S I FCK + +A+++ M P + TF L+ G+ LE++R+++ L
Sbjct: 373 SLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMS-L 431
Query: 557 WGDIKRNI----------ESGVLAVSRDL---------------YETLLLNFLQGGYFER 591
G I + +SG L V++ L Y+ LL G E+
Sbjct: 432 RGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEK 491
Query: 592 VMEVIGYMKKQNMYVDKLMY 611
+E+ G ++K M +D +Y
Sbjct: 492 ALEIFGKIEKSKMELDIGIY 511
>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Brachypodium distachyon]
Length = 692
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 115/266 (43%), Gaps = 24/266 (9%)
Query: 359 KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTY 418
++SEL+W L + F + + ID L + G L A +L M+ G D TY
Sbjct: 177 RSSELAWRLFEQLPAPNVFTFNIM----IDFLCKEGDLAEARALLARMKAIGCSPDVVTY 232
Query: 419 KSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD 478
SL+ Y K E E L+ +MR C V ++ + + F
Sbjct: 233 NSLIDGYGKCGELEEVEKLVGEMR------GCGCRPDVVT-YNALVNCFCKF-------G 278
Query: 479 KSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFY 538
+ + A S EM+ E ++ + ++ + FCK M+ +A+K++ +M+ ++P T+
Sbjct: 279 RMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYT 338
Query: 539 YLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGY 598
LV G D +L ++ ++ GV ++ Y L+ + G +V
Sbjct: 339 CLVDGTCKAGRLDDALVLTNEM---VQQGV-PLNVVTYTVLVDGLCKEGKVAEAEDVFRL 394
Query: 599 MKKQNMYVDKLMYKSEFLKHHKHLYR 624
M++ + ++L+Y + L H +Y+
Sbjct: 395 MERAGIRANELLYTT--LIHGHFVYK 418
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 23/180 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS- 444
++D L + G + A D+ ME AG + Y +L+ ++ K A +LL +M+
Sbjct: 375 LVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKG 434
Query: 445 ---------------CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD------KSDLA 483
C +Q L + + E K + T+ +MD K A
Sbjct: 435 MELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTN-IMDACFKARKESEA 493
Query: 484 ESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+L+Q+M + I + + CK I +A+ + +M ++ + P V+ + LV G
Sbjct: 494 IALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDG 553
>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial [Vitis vinifera]
gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 116/279 (41%), Gaps = 19/279 (6%)
Query: 335 FRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG 394
+ G L+ RA L+ GY K G + ++ +++ S E T S +IDA G
Sbjct: 317 LKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTY-SLLIDAYANAG 375
Query: 395 FLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEM 454
E+A +L +ME +G +S + +L +Y ++++ +L++MR S + +
Sbjct: 376 RWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPD----- 430
Query: 455 VVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKM 514
F V DT + D A + MR E N+ I CK
Sbjct: 431 ---RHFYNV------MIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGH 481
Query: 515 IGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD 574
A +++ MQE P T+ ++ E + D+ L G ++ G+LA +
Sbjct: 482 HNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQ---SQGLLA-NVV 537
Query: 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y TL+ + Q G F+ +E + MK + MY +
Sbjct: 538 TYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNA 576
>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
Length = 378
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 103/218 (47%), Gaps = 15/218 (6%)
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
R+ + LI+G K G+ E S + ++K+ + ++ + V+D + G ++ A++ L+
Sbjct: 60 RSYSILIHGLTKAGQARETSSIFHAMKQRGFAL-DARAYNAVVDGFCKSGKVDKAYEALE 118
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
+M++ P TY S++ K+ EA L ++ + + N+ +V S
Sbjct: 119 EMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNV---IVYS------- 168
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
S D + + D A +++EM ++ +Y NS + K + I +AL ++
Sbjct: 169 ----SLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQS 224
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
M+EMK P T+ L+ G ++ Y + W ++++
Sbjct: 225 MKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQK 262
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 98/221 (44%), Gaps = 19/221 (8%)
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
RA +++G+ K GK + L +K +H +T S +ID L ++ L+ A+ + +
Sbjct: 95 RAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGS-IIDGLAKIDRLDEAYMLFE 153
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
+ + G ++ Y SL+ + KV EA +L++M K L N+ ++ +
Sbjct: 154 EAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYT-------WNSLM 206
Query: 465 DKSASFTDTSSLMDKSDLAESLI--QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
D +L+ ++ E+LI Q M+E Y + I C+ + A +
Sbjct: 207 D---------ALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFW 257
Query: 523 RRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ MQ+ + P V T+ ++ G + + D L+ K N
Sbjct: 258 QEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKAN 298
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 102/242 (42%), Gaps = 40/242 (16%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I+ L ++G A ++ DDM G D TY +++ K+ A LLK+M +
Sbjct: 167 TTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEE 226
Query: 444 ----------SCLVQNLSCEMVVSER---FSEVADKSAS---FTDTSSLMDKSDL----- 482
S L+ +L + +V+E FS + K S FT TS +
Sbjct: 227 AGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKE 286
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A +L+ EM + I N + FCK + +AL + + M EM + P V T+ L+Y
Sbjct: 287 ASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMY 346
Query: 543 GHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602
G+S LW D+ +R L+ ++ + F + + GY K +
Sbjct: 347 GYS----------LWTDVVE---------ARKLFHVMITKGCKPNIFSYNILINGYCKAK 387
Query: 603 NM 604
+
Sbjct: 388 RI 389
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 114/285 (40%), Gaps = 30/285 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC--SDVIDALIQLGFLEAAHDILDDME 407
+ING K G+ + + LL KK + + + S +ID+L + + A DI M+
Sbjct: 204 IINGLCKIGETAAAAGLL---KKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMK 260
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK----------SCLVQNLSCEMVVS 457
G D TY SL+ K ++EA ALL +M + LV E VS
Sbjct: 261 AKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVS 320
Query: 458 ERFSEVADKS-----ASFTDTSSLMDKSDL------AESLIQEMREEAALSTIYKLNSSI 506
E + + + SSLM L A L M + I+ N I
Sbjct: 321 EALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILI 380
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566
+CK K I +A++++ M + P ++ L++G L R+ D+ RN+ +
Sbjct: 381 NGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQ----DLFRNMCT 436
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
Y LL F + GY + + M+ + + +MY
Sbjct: 437 NGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMY 481
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 113/290 (38%), Gaps = 38/290 (13%)
Query: 350 LINGYKKHGKNSELSWLL-----LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
LI G K + E S LL L+I + +F + ++D + G + A +L
Sbjct: 274 LIQGLCKFSRWKEASALLNEMTSLNIMPDIVTF------NVLVDTFCKEGKVSEALGVLK 327
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVS------ 457
M G + TY SL+ Y EA L M K C S ++++
Sbjct: 328 TMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAK 387
Query: 458 ------ERFSEVADKSASFTDTS--------SLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ F+E+ + + + S + K A+ L + M L ++ +
Sbjct: 388 RIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYS 447
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI-KR 562
+ FCK +G A +++R MQ ++P + + LV+ ++D L+ ++ +
Sbjct: 448 ILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQ 507
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
++ V LY T++ + G + +E M+ D++ Y
Sbjct: 508 GLQPHV-----QLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYN 552
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/407 (19%), Positives = 171/407 (42%), Gaps = 45/407 (11%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKK- 233
P+ +N+++ R G I + M + G+ + ++ I+ + C+ +L++
Sbjct: 402 PNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMI---DRLCKAQKLEEA 458
Query: 234 ---FKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKL-- 288
F+ D++ TP A + + L + DD + E +LD + L
Sbjct: 459 CSIFEGMDDKVCTPNAVTFSSLIDGLGKCG-RVDDAYSLYEKMLDCGHVPGAIVYTSLIR 517
Query: 289 -------RQDAQKPY--LISIGSPNLRCGLKLQIMPELLEKDSILKM-EGKQELVLFRN- 337
++D K Y ++ G C L ++ + D + K E ++ LFR
Sbjct: 518 SFFKCGRKEDGHKIYKEMVHTG-----CSPDLTLINTYM--DCVFKAGETEKGRALFREI 570
Query: 338 --GKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF 395
+ R+ + LI+G K G +E ++ L KE ++ + VID + G
Sbjct: 571 NAHGFIPDARSYSILIHGLVKAGLANE-TYELFYAMKEQGCVLDTHAYNAVIDGFCKSGK 629
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+ A+ +L++M++ GHP TY S++ K+ EA L ++ + + + N+
Sbjct: 630 VNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS 689
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+ + F +V + D A +++E+ ++ +Y N + K + I
Sbjct: 690 LIDGFGKVG--------------RIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 735
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
+AL ++ M+++K P T+ L+ G + + + W ++++
Sbjct: 736 NEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQK 782
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 90/204 (44%), Gaps = 27/204 (13%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID L + G ++ A+ + + M GH + Y SL+ +++K + + K+M
Sbjct: 478 SSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVH 537
Query: 444 SCLVQNLS-------CEMVVSER------FSEV-----ADKSASFTDTSSLMDKSDLAES 485
+ +L+ C E F E+ + S++ + K+ LA
Sbjct: 538 TGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANE 597
Query: 486 ---LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR---PTVETFYY 539
L M+E+ + + N+ I FCK G K Y+ ++EMK++ PTV T+
Sbjct: 598 TYELFYAMKEQGCVLDTHAYNAVIDGFCKS---GKVNKAYQLLEEMKVKGHPPTVVTYGS 654
Query: 540 LVYGHSSLEMYRDITILWGDIKRN 563
++ G + ++ + +L+ + K N
Sbjct: 655 VIDGLAKIDRLDEAYMLFEEAKSN 678
>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/407 (19%), Positives = 172/407 (42%), Gaps = 45/407 (11%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKK- 233
P+ +N+++ R G I + M + G+ + ++ I+ I + C+ +L++
Sbjct: 157 PNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIM--IDRL-CKAQKLEEA 213
Query: 234 ---FKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKL-- 288
F+ D++ TP A + + L + DD + E +LD + L
Sbjct: 214 CSIFEGMDDKVCTPNAVTFSSLIDGLGKCG-RVDDAYSLYEKMLDCGHVPGAIVYTSLIR 272
Query: 289 -------RQDAQKPY--LISIGSPNLRCGLKLQIMPELLEKDSILKM-EGKQELVLFRN- 337
++D K Y ++ G C L ++ + D + K E ++ LFR
Sbjct: 273 SFFKCGRKEDGHKIYKEMVHTG-----CSPDLTLINTYM--DCVFKAGETEKGRALFREI 325
Query: 338 --GKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF 395
+ R+ + LI+G K G +E ++ L KE ++ + VID + G
Sbjct: 326 NAHGFIPDARSYSILIHGLVKAGLANE-TYELFYAMKEQGCVLDTHAYNAVIDGFCKSGK 384
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+ A+ +L++M++ GHP TY S++ K+ EA L ++ + + + N+
Sbjct: 385 VNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS 444
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+ + F +V + D A +++E+ ++ +Y N + K + I
Sbjct: 445 LIDGFGKVG--------------RIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 490
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
+AL ++ M+++K P T+ L+ G + + + W ++++
Sbjct: 491 NEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQK 537
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 90/204 (44%), Gaps = 27/204 (13%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID L + G ++ A+ + + M GH + Y SL+ +++K + + K+M
Sbjct: 233 SSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVH 292
Query: 444 SCLVQNLS-------CEMVVSER------FSEV-----ADKSASFTDTSSLMDKSDLAES 485
+ +L+ C E F E+ + S++ + K+ LA
Sbjct: 293 TGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANE 352
Query: 486 ---LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR---PTVETFYY 539
L M+E+ + + N+ I FCK G K Y+ ++EMK++ PTV T+
Sbjct: 353 TYELFYAMKEQGCVLDTHAYNAVIDGFCKS---GKVNKAYQLLEEMKVKGHPPTVVTYGS 409
Query: 540 LVYGHSSLEMYRDITILWGDIKRN 563
++ G + ++ + +L+ + K N
Sbjct: 410 VIDGLAKIDRLDEAYMLFEEAKSN 433
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 103/474 (21%), Positives = 190/474 (40%), Gaps = 59/474 (12%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
PD + ++ V++ RFG K ++E+M + G+ +++ I I + C+
Sbjct: 279 PDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSY---IYGSIIGLLCR------- 328
Query: 235 KCYIDQLSTPFAHHYQQ-------FYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPK 287
C + + F+ +Q Y +L+ K DI AA + +M+ R+ P+
Sbjct: 329 ICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS-RDITPDV- 386
Query: 288 LRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKME---GKQELVLFRNGKLLHSN 344
L A IG L ++ + LE DS+ E G + ++ +H++
Sbjct: 387 LTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNH 446
Query: 345 RAMA----------KLINGYKKHG---KNSELSWLLLSIKKEHHSFGESTLCSDVIDALI 391
A LI+G K G +EL + I + + F ++ +++ L
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS----IVNGLC 502
Query: 392 QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
+ G +E A ++ + E AG D+ TY +L+ AY K +A+ +LK+M L +
Sbjct: 503 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIV 562
Query: 452 CEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK 511
V+ F L + E L+ M + NS + +C
Sbjct: 563 TFNVLMNGF--------------CLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCI 608
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV 571
+ A IY+ M + P +T+ LV GH ++ L+ ++K +V
Sbjct: 609 RNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMK----GKGFSV 664
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRR 625
S Y L+ FL+ F EV M+++ + DK ++ +F K+ +R
Sbjct: 665 SVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF--DFFSDTKYKGKR 716
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 25/190 (13%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI + QLG ++ AH +L MEL G+ D +Y +++ Y + + L++ M++
Sbjct: 252 VIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 311
Query: 446 LVQN---------LSCEMV----VSERFSEVADKSASFTDT---SSLMD----KSDL--A 483
L N L C + E FSE+ + DT ++L+D + D+ A
Sbjct: 312 LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMI-RQGILPDTVVYTTLIDGFCKRGDIRAA 370
Query: 484 ESLIQEMREEAALSTIYKLNSSIYFFCK-GKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
EM + + I FC+ G M+ +A K++ M + P TF L+
Sbjct: 371 SKFFYEMHSRDITPDVLTYTAIISGFCQIGDMV-EAGKLFHEMFCKGLEPDSVTFTELIN 429
Query: 543 GHSSLEMYRD 552
G+ +D
Sbjct: 430 GYCKAGHMKD 439
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 103/474 (21%), Positives = 190/474 (40%), Gaps = 59/474 (12%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
PD + ++ V++ RFG K ++E+M + G+ +++ I I + C+
Sbjct: 722 PDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSY---IYGSIIGLLCR------- 771
Query: 235 KCYIDQLSTPFAHHYQQ-------FYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPK 287
C + + F+ +Q Y +L+ K DI AA + +M+ R+ P+
Sbjct: 772 ICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS-RDITPD-V 829
Query: 288 LRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKME---GKQELVLFRNGKLLHSN 344
L A IG L ++ + LE DS+ E G + ++ +H++
Sbjct: 830 LTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNH 889
Query: 345 RAMA----------KLINGYKKHG---KNSELSWLLLSIKKEHHSFGESTLCSDVIDALI 391
A LI+G K G +EL + I + + F ++ +++ L
Sbjct: 890 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS----IVNGLC 945
Query: 392 QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
+ G +E A ++ + E AG D+ TY +L+ AY K +A+ +LK+M L +
Sbjct: 946 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIV 1005
Query: 452 CEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK 511
V+ F L + E L+ M + NS + +C
Sbjct: 1006 TFNVLMNGF--------------CLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCI 1051
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV 571
+ A IY+ M + P +T+ LV GH ++ L+ ++K +V
Sbjct: 1052 RNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMK----GKGFSV 1107
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRR 625
S Y L+ FL+ F EV M+++ + DK ++ +F K+ +R
Sbjct: 1108 SVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF--DFFSDTKYKGKR 1159
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 25/190 (13%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI + QLG ++ AH +L MEL G+ D +Y +++ Y + + L++ M++
Sbjct: 695 VIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 754
Query: 446 LVQN---------LSCEMV----VSERFSEVADKSASFTDT---SSLMD----KSDL--A 483
L N L C + E FSE+ + DT ++L+D + D+ A
Sbjct: 755 LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMI-RQGILPDTVVYTTLIDGFCKRGDIRAA 813
Query: 484 ESLIQEMREEAALSTIYKLNSSIYFFCK-GKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
EM + + I FC+ G M+ +A K++ M + P TF L+
Sbjct: 814 SKFFYEMHSRDITPDVLTYTAIISGFCQIGDMV-EAGKLFHEMFCKGLEPDSVTFTELIN 872
Query: 543 GHSSLEMYRD 552
G+ +D
Sbjct: 873 GYCKAGHMKD 882
>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 32/252 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV----KMFREAEALLKQM 441
VI+ L ++G L A DI++DM++ G + TY +L+ Y K+ KM++ A+A+LK+M
Sbjct: 169 VINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYK-ADAILKEM 227
Query: 442 RKS----------------CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD------K 479
R C +N+S M V + K T +SL++ K
Sbjct: 228 RADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVT-YNSLINGLCNNGK 286
Query: 480 SDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
+ A +L +M I N+ + FCK KM+ A +++ M + I P V T+
Sbjct: 287 VNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNI 346
Query: 540 LVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
L+ + E D L+ R + + Y L+ + G E ++ M
Sbjct: 347 LIDAYCKDENMEDAFALY----RIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEM 402
Query: 600 KKQNMYVDKLMY 611
+++ D + Y
Sbjct: 403 DTKHLKADLITY 414
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 104/228 (45%), Gaps = 15/228 (6%)
Query: 335 FRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG 394
R+ L R+ + LI+G K G+ E S + ++K++ + ++ + V+D + G
Sbjct: 554 IRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFAL-DARAYNAVVDGFCKSG 612
Query: 395 FLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEM 454
+ A++IL++M+ TY +++ K+ EA L ++ + + N+
Sbjct: 613 KVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYS 672
Query: 455 VVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKM 514
+ + F +V + D A +++EM ++ +Y NS + K +
Sbjct: 673 SLIDGFGKVG--------------RIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEE 718
Query: 515 IGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
I +AL ++ M+EMK P T+ L+ G ++ Y + W D+++
Sbjct: 719 INEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQK 766
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 99/221 (44%), Gaps = 19/221 (8%)
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
RA +++G+ K GK + +L +K++ +T + ++D L ++ L+ A+ + +
Sbjct: 599 RAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGA-IVDGLAKIDRLDEAYMLFE 657
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
+ + G ++ Y SL+ + KV EA +L++M K L N+ ++ +
Sbjct: 658 EAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYT-------WNSLL 710
Query: 465 DKSASFTDTSSLMDKSDLAESLI--QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
D +L+ ++ E+L+ Q M+E Y + I C+ + A +
Sbjct: 711 D---------ALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFW 761
Query: 523 RRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ MQ+ + P V T+ ++ G + + D L+ K N
Sbjct: 762 QDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 802
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 107/255 (41%), Gaps = 28/255 (10%)
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
T CS +ID L + G ++ A+ + + M AGH + Y SL+ ++ + + K+
Sbjct: 460 TYCS-LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKE 518
Query: 441 M-RKSCL--VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL--------------- 482
+ R+ C + L+ M + EV F D S D+
Sbjct: 519 LIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQ 578
Query: 483 ---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
++ M+++ N+ + FCK + A +I M+E ++PTV T+
Sbjct: 579 ARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGA 638
Query: 540 LVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGY 598
+V G + ++ + +L+ + K + IE V+ LY +L+ F + G + ++
Sbjct: 639 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVV-----LYSSLIDGFGKVGRIDEAYLILEE 693
Query: 599 MKKQNMYVDKLMYKS 613
M K+ + + + S
Sbjct: 694 MMKKGLTPNVYTWNS 708
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 71/167 (42%), Gaps = 14/167 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I AL + E A ++L M+ G+ + + +L+ A + +A AL+ +++ SC
Sbjct: 185 LIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSC 244
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L ++ V + F + + D+A E++ + S
Sbjct: 245 LEPDIVLYNVCIDCFGKAGN--------------VDMAWKFFHELKAQGLKPDDVSYTSM 290
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
I+ CK +G+A +++ +M+ + P + ++ G+ S + D
Sbjct: 291 IWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFED 337
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 103/232 (44%), Gaps = 26/232 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
V++ L + G +E A + D+M G D +Y +L++ Y K EA A+ +M +
Sbjct: 231 VVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKG 290
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS---DLAESLIQEMREEAALSTIYKL 502
+V ++ +FT M ++ + A +L+ +MRE +
Sbjct: 291 VVPDV-----------------VTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTF 333
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK- 561
+ I FC+ + DAL + M+E +I+P+V + L+ G+ L + L +++
Sbjct: 334 TALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEA 393
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ ++ V+ Y T+L + + G + E+ M K+ + D + Y S
Sbjct: 394 KGMKPDVVT-----YSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSS 440
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 24/208 (11%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
EA + DDM AG + TY +L+ A+ + AE L+ MR+ + +L
Sbjct: 172 EALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLV----- 226
Query: 457 SERFSEVAD---KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
F+ V + K+ D + D EM E N+ + +CK
Sbjct: 227 --TFNTVVNGLCKAGRMEDARKMFD----------EMAREGLTPDGVSYNTLVSGYCKAG 274
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR 573
+ +AL ++ M + + P V TF L++ L G ++ E G L ++
Sbjct: 275 CLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMR---ERG-LRMNE 330
Query: 574 DLYETLLLNFLQGGYFERVMEVIGYMKK 601
+ L+ F + G+ + + + M++
Sbjct: 331 FTFTALIDGFCRNGFLDDALLAMKEMRE 358
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/134 (18%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 481 DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
D AE L+ MRE ++ N+ + CK + DA K++ M + P ++ L
Sbjct: 207 DAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTL 266
Query: 541 VYGHSSLEMYRDITILWGDI-KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
V G+ + ++ ++ ++ + V+ + +L+ + G ER + ++G M
Sbjct: 267 VSGYCKAGCLHEALAVFAEMAQKGVVPDVVT-----FTSLIHAMCRAGNLERAVALVGQM 321
Query: 600 KKQNMYVDKLMYKS 613
+++ + +++ + +
Sbjct: 322 RERGLRMNEFTFTA 335
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 76/394 (19%), Positives = 157/394 (39%), Gaps = 55/394 (13%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
P + +N VL A + S + ++ M + GV + ++ IL + QR+E
Sbjct: 118 PSLLAYNAVLLA-LSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREE--AL 174
Query: 235 KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQK 294
D + Y +L++ + ++DAA L+ M R+ +
Sbjct: 175 GVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVM------------REGGVR 222
Query: 295 PYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELV--LFRNGKLLHSNRAMAKLIN 352
P L++ + ++ L + +ME +++ + R G L + L++
Sbjct: 223 PSLVTFNT----------VVNGLCKAG---RMEDARKMFDEMAREG-LTPDGVSYNTLVS 268
Query: 353 GYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHP 412
GY K G E + + ++ T S +I A+ + G LE A ++ M G
Sbjct: 269 GYCKAGCLHEALAVFAEMAQKGVVPDVVTFTS-LIHAMCRAGNLERAVALVGQMRERGLR 327
Query: 413 MDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC-------------------- 452
M+ T+ +L+ + + +A +K+MR+ + ++ C
Sbjct: 328 MNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEAREL 387
Query: 453 --EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFC 510
EM +V S + + D +D A L ++M ++ + +S I C
Sbjct: 388 IHEMEAKGMKPDVVTYSTILSGYCKIGD-TDSAFELNRKMLKKGVVPDAITYSSLIRGLC 446
Query: 511 KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ + +GDA +++ +M ++ ++P T+ L+ GH
Sbjct: 447 EERRLGDACELFEKMLQLGLQPDEFTYTTLIDGH 480
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 104/227 (45%), Gaps = 15/227 (6%)
Query: 336 RNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF 395
R+ L R+ + LI+G K G+ E S + ++K++ + ++ + V+D + G
Sbjct: 421 RSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFAL-DARAYNAVVDGFCKSGK 479
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+ A++IL++M+ TY +++ K+ EA L ++ + + N+
Sbjct: 480 VHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSS 539
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+ + F +V + D A +++EM ++ +Y NS + K + I
Sbjct: 540 LIDGFGKVG--------------RIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEI 585
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
+AL ++ M+EMK P T+ L+ G ++ Y + W D+++
Sbjct: 586 NEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQK 632
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 99/221 (44%), Gaps = 19/221 (8%)
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
RA +++G+ K GK + +L +K++ +T + ++D L ++ L+ A+ + +
Sbjct: 465 RAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGA-IVDGLAKIDRLDEAYMLFE 523
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
+ + G ++ Y SL+ + KV EA +L++M K L N+ ++ +
Sbjct: 524 EAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVY-------TWNSLL 576
Query: 465 DKSASFTDTSSLMDKSDLAESLI--QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
D +L+ ++ E+L+ Q M+E Y + I C+ + A +
Sbjct: 577 D---------ALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFW 627
Query: 523 RRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ MQ+ + P V T+ ++ G + + D L+ K N
Sbjct: 628 QDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 668
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 107/255 (41%), Gaps = 28/255 (10%)
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
T CS +ID L + G ++ A+ + + M AGH + Y SL+ ++ + + K+
Sbjct: 326 TYCS-LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKE 384
Query: 441 M-RKSCL--VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL--------------- 482
+ R+ C + L+ M + EV F D S D+
Sbjct: 385 LIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQ 444
Query: 483 ---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
++ M+++ N+ + FCK + A +I M+E ++PTV T+
Sbjct: 445 ARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGA 504
Query: 540 LVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGY 598
+V G + ++ + +L+ + K + IE V+ LY +L+ F + G + ++
Sbjct: 505 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVV-----LYSSLIDGFGKVGRIDEAYLILEE 559
Query: 599 MKKQNMYVDKLMYKS 613
M K+ + + + S
Sbjct: 560 MMKKGLTPNVYTWNS 574
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 71/167 (42%), Gaps = 14/167 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I AL + E A ++L M+ G+ + + +L+ A + +A AL+ +++ SC
Sbjct: 51 LIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSC 110
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L ++ V + F + + D+A E++ + S
Sbjct: 111 LEPDIVLYNVCIDCFGKAGN--------------VDMACKFFHELKAQGLKPDDVSYTSM 156
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
I+ CK +G+A +++ +M+ + P + ++ G+ S + D
Sbjct: 157 IWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFED 203
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 104/227 (45%), Gaps = 15/227 (6%)
Query: 336 RNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF 395
R+ L R+ + LI+G K G+ E S + ++K++ + ++ + V+D + G
Sbjct: 289 RSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFAL-DARAYNAVVDGFCKSGK 347
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+ A++IL++M+ TY +++ K+ EA L ++ + + N+
Sbjct: 348 VHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSS 407
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+ + F +V + D A +++EM ++ +Y NS + K + I
Sbjct: 408 LIDGFGKVG--------------RIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEI 453
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
+AL ++ M+EMK P T+ L+ G ++ Y + W D+++
Sbjct: 454 NEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQK 500
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 99/221 (44%), Gaps = 19/221 (8%)
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
RA +++G+ K GK + +L +K++ +T + ++D L ++ L+ A+ + +
Sbjct: 333 RAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGA-IVDGLAKIDRLDEAYMLFE 391
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
+ + G ++ Y SL+ + KV EA +L++M K L N+ ++ +
Sbjct: 392 EAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVY-------TWNSLL 444
Query: 465 DKSASFTDTSSLMDKSDLAESLI--QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
D +L+ ++ E+L+ Q M+E Y + I C+ + A +
Sbjct: 445 D---------ALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFW 495
Query: 523 RRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ MQ+ + P V T+ ++ G + + D L+ K N
Sbjct: 496 QDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 536
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 107/255 (41%), Gaps = 28/255 (10%)
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
T CS +ID L + G ++ A+ + + M AGH + Y SL+ ++ + + K+
Sbjct: 194 TYCS-LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKE 252
Query: 441 M-RKSCL--VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL--------------- 482
+ R+ C + L+ M + EV F D S D+
Sbjct: 253 LIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQ 312
Query: 483 ---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
++ M+++ N+ + FCK + A +I M+E ++PTV T+
Sbjct: 313 ARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGA 372
Query: 540 LVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGY 598
+V G + ++ + +L+ + K + IE V+ LY +L+ F + G + ++
Sbjct: 373 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVV-----LYSSLIDGFGKVGRIDEAYLILEE 427
Query: 599 MKKQNMYVDKLMYKS 613
M K+ + + + S
Sbjct: 428 MMKKGLTPNVYTWNS 442
>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 719
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 117/268 (43%), Gaps = 28/268 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+ Y G E L+ ++ + S G T + VI+ L + G E A ++ +M +
Sbjct: 266 LISAYSSQGLMEEAFELMHAMPSKGFSPGVYTY-NTVINGLCKHGKYERAKEVFAEMLRS 324
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA--DKS 467
G DSTTY+SLL K E E + MR +V +L C + F+ DK+
Sbjct: 325 GLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKA 384
Query: 468 ASFTDT---SSLMDKSDLAESLIQ----------------EMREEAALSTIYKLNSSIYF 508
+ ++ + L+ + + LIQ EM ++ + N+ ++
Sbjct: 385 LMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHG 444
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESG 567
CK KM+G+A K++ M E + P T L+ GH L ++ L+ +K + I+
Sbjct: 445 LCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLD 504
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEV 595
V+ Y TLL F + G + E+
Sbjct: 505 VVT-----YNTLLDGFGKVGDIDTAKEI 527
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 31/237 (13%)
Query: 373 EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
E F +S + +ID +LG L+ A ++ M+ +D TY +LL + KV
Sbjct: 463 ERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDID 522
Query: 433 EAEALLKQMRK----------SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM----- 477
A+ + M S LV L + +SE F V D+ S + ++M
Sbjct: 523 TAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAF-RVWDEMISKSIKPTVMICNSM 581
Query: 478 --------DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
+ SD E +++M E + N+ IY F K + + A + ++M+E +
Sbjct: 582 IKGYCRSGNASD-GEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQ 640
Query: 530 --IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
+ P V T+ +++G ++ + +++ IE GV R Y +L+ F+
Sbjct: 641 GGLVPDVFTYNSILHGFCRENQMKEAEAV---LRKMIERGV-NPDRSTYTSLINGFV 693
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 121/284 (42%), Gaps = 28/284 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+ Y G E L+ ++ + S G T + VI+ L + G E A ++ +M +
Sbjct: 276 LISAYSSKGLMEEAFELMNAMPGKGFSPGVYTY-NTVINGLCKHGKYERAKEVFAEMLRS 334
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA--DKS 467
G DSTTY+SLL K E E + MR +V +L C + F+ DK+
Sbjct: 335 GLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKA 394
Query: 468 ASFTDT---SSLMDKSDLAESLIQ----------------EMREEAALSTIYKLNSSIYF 508
+ ++ + L+ + + LIQ EM ++ + N+ ++
Sbjct: 395 LMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHG 454
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESG 567
CK KM+G+A K++ M E + P T L+ GH L ++ L+ +K + I
Sbjct: 455 LCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLD 514
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
V+ Y TLL F + G + E+ M + + + Y
Sbjct: 515 VVT-----YNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISY 553
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 26/211 (12%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
+ + + L+ Y + + REA +R S+ F+ D + +
Sbjct: 164 NDSVFDLLIRTYVQARKLREAHEAFTLLR--------------SKGFTVSIDACNALIGS 209
Query: 474 SSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK-GKM--IGDALKIYRRMQEMKI 530
+ +LA + QE+ +Y LN + CK GKM +G L ++QE +
Sbjct: 210 LVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLS---QVQEKGV 266
Query: 531 RPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGGYF 589
P + T+ L+ +SS + + L + + GV Y T++ + G +
Sbjct: 267 YPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYT-----YNTVINGLCKHGKY 321
Query: 590 ERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
ER EV M + + D Y+S ++ K
Sbjct: 322 ERAKEVFAEMLRSGLSPDSTTYRSLLMEACK 352
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 31/237 (13%)
Query: 373 EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
E F +S + +ID +LG L+ A ++ M+ +D TY +LL + KV
Sbjct: 473 ERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDID 532
Query: 433 EA----------EALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM----- 477
A E L + S LV L + ++E F V D+ S ++M
Sbjct: 533 TAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAF-RVWDEMISKNIKPTVMICNSM 591
Query: 478 --------DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
+ SD ES +++M E + N+ IY F + + + A + ++M+E +
Sbjct: 592 IKGYCRSGNASD-GESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQ 650
Query: 530 --IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
+ P V T+ +++G ++ ++ +++ IE GV R Y ++ F+
Sbjct: 651 GGLVPDVFTYNSILHGFCRQNQMKEAEVV---LRKMIERGV-NPDRSTYTCMINGFV 703
>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 774
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 24/205 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-R 442
+ +I A ++ G ++ A +++DM G P+D TY L+ A+ K+ +A L +M R
Sbjct: 524 NTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVR 583
Query: 443 KSCLVQNLSCEMVVSE--RFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
K + N+SC ++++ R +V + A L+++M +
Sbjct: 584 KDLVPSNISCNLLINGLCRVGKVCN-----------------ALELLRDMIHRGLAPDVV 626
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
NS I CK I +A ++ ++Q I+P T+ L+ H M+ D +L +
Sbjct: 627 TYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLL---L 683
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQ 585
R +E+ + Y L+ NF++
Sbjct: 684 LRGVENAFIPNDVTWY-ILVSNFIK 707
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 99/264 (37%), Gaps = 53/264 (20%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LINGY K G+ E + L ++ + + +I L + G + +A D+++DM
Sbjct: 350 LINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSAN 409
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + TY +LL + K EA +L
Sbjct: 410 GCTPNLITYTTLLDGFCKKNQLEEAGYVL------------------------------- 438
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
EM + I N + CK + AL + M +
Sbjct: 439 ------------------NEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKG 480
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
+P + TF L++G ++ D L+ D+ + GV+A + Y TL+ FL+GG
Sbjct: 481 CKPDIFTFNTLIFGLCKVDRKEDALALYRDM---LLDGVIA-NTVTYNTLIHAFLRGGAI 536
Query: 590 ERVMEVIGYMKKQNMYVDKLMYKS 613
+ ++++ M + +D++ Y
Sbjct: 537 QEALKLVNDMLFRGCPLDEITYNG 560
>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
Length = 479
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 117/267 (43%), Gaps = 14/267 (5%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+ING+ GK SE LL + S T S +I+AL++ G L +A D+L +M +
Sbjct: 193 MINGFCSSGKWSEAQRLLQEMLVRKISPDVVTF-SGLINALVKEGDLNSAQDLLQEMISS 251
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + T +LL ++A + K M+KS + ++ + F+ V +
Sbjct: 252 GVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMM------DIDATHAFNGVEPDVQT 305
Query: 470 FTD-TSSLMDKSDL--AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ S L+++ AE L +EM + +S I CK + +A +++ M
Sbjct: 306 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMG 365
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
P + TF L+ G+ M D L+ ++ R G++A + Y TL+ F +
Sbjct: 366 SKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRR---GIVA-NAITYITLIRGFRKV 421
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKS 613
G +++ M +Y D + ++
Sbjct: 422 GNINGSLDIFQEMISSGVYPDTITIRN 448
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 90/207 (43%), Gaps = 25/207 (12%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+++G K G LL +++ H + + S +ID L + G A ++ +M+
Sbjct: 120 GTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQ 179
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY ++ + + EA+ LL++M LV+ +S ++V FS + +
Sbjct: 180 DKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEM----LVRKISPDVVT---FSGLINAL 232
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
D +S A+ L+QEM + N+ + C + DAL++++ MQ+
Sbjct: 233 VKEGDLNS-------AQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQK 285
Query: 528 M-----------KIRPTVETFYYLVYG 543
+ P V+T+ L+ G
Sbjct: 286 SMMDIDATHAFNGVEPDVQTYNILISG 312
>gi|224141335|ref|XP_002324029.1| predicted protein [Populus trichocarpa]
gi|222867031|gb|EEF04162.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 137/324 (42%), Gaps = 40/324 (12%)
Query: 336 RNGKLLHSNRAMAKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG 394
RN L + LI + K G ++ L WL ++ G+ L S++I+ +L
Sbjct: 134 RNRALAPDRYTYSTLITHFGKAGMFDASLFWL--QQMEQDRVSGDLVLYSNLIELSRKLC 191
Query: 395 FLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN----- 449
A I ++ +G D Y S++ + K K+FREA+ L+K+MR+ ++ +
Sbjct: 192 DYSKAISIFMRLKRSGIMPDLVAYNSMINVFGKAKLFREAKLLMKEMREVGVMPDTVSYS 251
Query: 450 -LSCEMVVSERFSEVADKSASFT---------------DTSSLMDKSDLAESLIQEMREE 493
L V +E+F E A D +D + A+ L MR+
Sbjct: 252 TLLSVYVENEKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKM 311
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMYR 551
+ N+ + + + ++ G+A+ ++R MQ+ I V T+ + VYG SLE +
Sbjct: 312 GIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYG-KSLEHEK 370
Query: 552 DITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
++ R IE + Y T++ + + G +R + ++ + +D+++Y
Sbjct: 371 ATNLMQEMQNRGIEPNAIT-----YSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLY 425
Query: 612 --------KSEFLKHHKHLYRRLK 627
+S + H K L LK
Sbjct: 426 QTMIVAYERSGLVAHAKRLLHELK 449
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 111/266 (41%), Gaps = 36/266 (13%)
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE 458
AH + D+M D TY +L+T + K MF + L+QM + +S ++V+
Sbjct: 126 AHGLFDEMRNRALAPDRYTYSTLITHFGKAGMFDASLFWLQQMEQD----RVSGDLVLYS 181
Query: 459 RFSEVADKSASFTDTSSLMDK-------SDL------------------AESLIQEMREE 493
E++ K ++ S+ + DL A+ L++EMRE
Sbjct: 182 NLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVFGKAKLFREAKLLMKEMREV 241
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI 553
+ ++ + + + + +AL ++ M E K + T ++ + L+M ++
Sbjct: 242 GVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEA 301
Query: 554 T-ILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
+ W K IE V++ Y TLL + + F + + M+K+++ + + Y
Sbjct: 302 DRLFWSMRKMGIEPNVVS-----YNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYN 356
Query: 613 SEFLKHHKHLYRRLKVSNARTEAQSK 638
+ + K L K +N E Q++
Sbjct: 357 TMIKVYGKSLEHE-KATNLMQEMQNR 381
>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
Length = 479
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 117/267 (43%), Gaps = 14/267 (5%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+ING+ GK SE LL + S T S +I+AL++ G L +A D+L +M +
Sbjct: 193 MINGFCSSGKWSEAQRLLQEMLVRKISPDVVTF-SGLINALVKEGDLNSAQDLLQEMISS 251
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + T +LL ++A + K M+KS + ++ + F+ V +
Sbjct: 252 GVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMM------DIDATHAFNGVEPDVQT 305
Query: 470 FTD-TSSLMDKSDL--AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ S L+++ AE L +EM + +S I CK + +A +++ M
Sbjct: 306 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMG 365
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
P + TF L+ G+ M D L+ ++ R G++A + Y TL+ F +
Sbjct: 366 SKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRR---GIVA-NAITYITLIRGFRKV 421
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKS 613
G +++ M +Y D + ++
Sbjct: 422 GNINGSLDIFQEMISSGVYPDTITIRN 448
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 90/207 (43%), Gaps = 25/207 (12%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+++G K G LL +++ H + + S +ID L + G A ++ +M+
Sbjct: 120 GTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQ 179
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY ++ + + EA+ LL++M LV+ +S ++V FS + +
Sbjct: 180 DKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEM----LVRKISPDVVT---FSGLINAL 232
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
D +S A+ L+QEM + N+ + C + DAL++++ MQ+
Sbjct: 233 VKEGDLNS-------AQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQK 285
Query: 528 M-----------KIRPTVETFYYLVYG 543
+ P V+T+ L+ G
Sbjct: 286 SMMDIDATHAFNGVEPDVQTYNILISG 312
>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
Length = 773
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 20/269 (7%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF-LEAAHDILD 404
A LIN Y ++G+ LL +KKE T + V++A + G E ++
Sbjct: 119 AFTALINAYGRNGQYEASLHLLARMKKERVEPNLITY-NTVLNACSKGGLDWEGLLNLFA 177
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
M G D TY +LL+A + +A + K M +S +V + A
Sbjct: 178 QMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVAD--------------A 223
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
S DT + ++ E L++EM +E I NS I + + A ++++
Sbjct: 224 VTYKSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQ 283
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
MQ P VET+ L+ + + + + L+ D+K +A Y +L+ F
Sbjct: 284 MQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPTVAT----YNSLIQVFG 339
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+GGYF+ + + M + D Y +
Sbjct: 340 EGGYFQESINLFHDMVDSGVKPDDATYSA 368
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 94/220 (42%), Gaps = 22/220 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I+A G + A + M+ G D TY +LL Y F + +L M++
Sbjct: 262 NSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKE 321
Query: 444 SCLVQNLSCEMVVSERFS--EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYK 501
LS V+ S +V + F ++ +L D+ +S ++ ++A S +
Sbjct: 322 ------LSTPPTVATYNSLIQVFGEGGYFQESINLFH--DMVDSGVKP--DDATYSALLS 371
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
+ +G + +A KI++ M + P++E L+ + + MY+D + + I+
Sbjct: 372 VCG------RGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIR 425
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
E+G L Y+ L+ + +GG + + M K
Sbjct: 426 ---EAG-LDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNK 461
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 109/266 (40%), Gaps = 39/266 (14%)
Query: 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST 416
G E + +L EH +TLC+ VI+++ + G ++ A +L+DM G D+
Sbjct: 295 RGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTI 354
Query: 417 TYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSS 475
+Y ++L + + + +A+ LL +M R +C +F
Sbjct: 355 SYTTVLKGLCRAERWDDAKELLNEMVRNNC------------------PPNEVTFNTFIC 396
Query: 476 LMDKSDLAES---LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP 532
++ + L E LI++M E + N+ + FC I AL+++R M +P
Sbjct: 397 ILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFR---SMPCKP 453
Query: 533 TVETFYYLVYGHSSLEMYRDIT-----ILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
T+ L+ G + E +L GD N+ + + L+ F Q G
Sbjct: 454 NTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVT---------FNVLVSFFCQKG 504
Query: 588 YFERVMEVIGYMKKQNMYVDKLMYKS 613
+ E +E++ M + + + Y +
Sbjct: 505 FLEEAIELVEQMMEHGCTPNLITYNT 530
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 25/203 (12%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
A L+ GY ++G L+ S+ ++ + L I L G + A +LDD
Sbjct: 113 AYNTLVAGYCRYGHLDAARRLIGSMPVAPDAYTYTPL----IRVLCDRGRVADALSLLDD 168
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSC--------LVQNLSCEMVV 456
M G + TY LL A + F +A A+L +MR K C ++ N C
Sbjct: 169 MLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGR 228
Query: 457 SERFSEVADKSASF---TDTSSLMD---------KSDLAESLIQEMREEAALSTIYKLNS 504
+ E+ ++ S+ DT S + D E L EM E+ + +
Sbjct: 229 VDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDM 288
Query: 505 SIYFFCKGKMIGDALKIYRRMQE 527
I FFC+G M+ A+++ +M E
Sbjct: 289 LIRFFCRGGMVERAIQVLEQMTE 311
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 107/259 (41%), Gaps = 30/259 (11%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHS---FGESTLCSDVIDALIQLGFLEAAHDILD 404
KLI + G+ S+ + +L + + F +TL + + G L+AA ++
Sbjct: 80 TKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTL----VAGYCRYGHLDAARRLIG 135
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEV 463
M +A D+ TY L+ +A +LL M R+ C +V E
Sbjct: 136 SMPVAP---DAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPN-----VVTYTVLLEA 187
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
+++ F +++D EMR + I N I C+ + DA ++
Sbjct: 188 MCRNSGFEQAMAVLD----------EMRAKGCTPNIVTYNVIINGMCREGRVDDARELLN 237
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNF 583
R+ +P ++ L+ G + + + D+ L+ ++ +E + + ++ L+ F
Sbjct: 238 RLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEM---MEKNCMP-NEVTFDMLIRFF 293
Query: 584 LQGGYFERVMEVIGYMKKQ 602
+GG ER ++V+ M +
Sbjct: 294 CRGGMVERAIQVLEQMTEH 312
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 95/233 (40%), Gaps = 28/233 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI AL L A L++M + TY L+ K EA ALL +MRK C
Sbjct: 52 VIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKC 111
Query: 446 LVQNLSCEMVVS-----ERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
+ ++ ++S ER SE D L++EM + I+
Sbjct: 112 VPTAVTYNSLISGLCKAERASEAYD--------------------LLEEMVYSGCIPDIF 151
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
+ I FCK K DAL+++ ++ RP V T+ L+ G ++ L+G
Sbjct: 152 TYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFG-- 209
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
R I+SG + Y +L+ F + G + M ++ M + D + Y +
Sbjct: 210 -RMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTT 261
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 30/201 (14%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K G+ E L + K + + +I ++G ++ A ++L+ M
Sbjct: 191 LIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 250
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D TY +L+ + K+ +A LL QM + L ++ +
Sbjct: 251 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDV-----------------VT 293
Query: 470 FTDTSSLMDK-------SDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
FT SLMD SD A ++ EMR ++ T+Y N+ + +C+ + +A K
Sbjct: 294 FT---SLMDGLCRENRLSD-AVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM 349
Query: 523 RRMQEMKIRPTVETFYYLVYG 543
++EM P V +F ++ G
Sbjct: 350 --LEEMDCPPNVVSFNIMIRG 368
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 107/263 (40%), Gaps = 28/263 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K G+ E LL ++K+ + + +I L + A+D+L++M +
Sbjct: 87 LIDGLCKGGRVDEAVALLSKMRKK--CVPTAVTYNSLISGLCKAERASEAYDLLEEMVYS 144
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM----------RKSCLVQNLSCEMVVSER 459
G D TY +L+T + K K +A + +Q+ SCL+ L E + E
Sbjct: 145 GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 204
Query: 460 ---FSEVADKSASFTDTSSL---------MDKSDLAESLIQEMREEAALSTIYKLNSSIY 507
F + + +T + M K D A +L++ M E + + + +
Sbjct: 205 IDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMN 264
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESG 567
FCK + DA + +M + P V TF L+ G D + G+++R S
Sbjct: 265 GFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSP 324
Query: 568 VLAVSRDLYETLLLNFLQGGYFE 590
+ Y T+L + + E
Sbjct: 325 TVYT----YNTILDGYCRANQLE 343
>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
Length = 773
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 20/269 (7%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF-LEAAHDILD 404
A LIN Y ++G+ LL +KKE T + V++A + G E ++
Sbjct: 119 AFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITY-NTVLNACSKGGLDWEGLLNLFA 177
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
M G D TY +LL+A + +A + K M +S +V + A
Sbjct: 178 QMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVAD--------------A 223
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
S DT + ++ E L++EM +E I NS I + + A ++++
Sbjct: 224 VTYKSLVDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQ 283
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
MQ P VET+ L+ + + + + L+ D+K +A Y +L+ F
Sbjct: 284 MQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVAT----YNSLIQVFG 339
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+GGYF+ + + M + D Y +
Sbjct: 340 EGGYFQESINLFHDMVDSGVKPDDATYSA 368
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 97/238 (40%), Gaps = 28/238 (11%)
Query: 385 DVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RK 443
D QLG +E ++L +ME G+P D Y SL+ AY A + KQM R
Sbjct: 231 DTFAGSNQLGRVE---ELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRG 287
Query: 444 SC------------LVQNLSCEMVVSERFSEVADKSASFTDTS--SLM----DKSDLAES 485
C + N C V FS++ D S T + SL+ + ES
Sbjct: 288 GCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQES 347
Query: 486 --LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
L +M + ++ + +G + +A KI++ M + P++E L+
Sbjct: 348 INLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISS 407
Query: 544 HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
+ + MY+D + + I+ E+G L Y+ L+ + +GG + + M K
Sbjct: 408 YGKMAMYKDALVSYYRIR---EAG-LDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNK 461
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 87/462 (18%), Positives = 177/462 (38%), Gaps = 57/462 (12%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQR--DELK 232
P+ +N+++ + G + + M G+ + ++ I+ QR D
Sbjct: 407 PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVD-RLCKAQRLDDACS 465
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDA 292
F+ + P A Y E L H + D+ E +LD N+ +PN +
Sbjct: 466 IFEGLDHKTCRPDAVTYCSLIEGL-GRHGRVDEAYKLYEQMLDANQ----IPNAVVYTSL 520
Query: 293 QKPYLISIGSPNLRCG------------LKLQIMPELL----EKDSILKM----EGKQEL 332
+ + +CG L+L P+LL D + K +G+
Sbjct: 521 IRNFF--------KCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALF 572
Query: 333 VLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ 392
+N + R+ LI+G K G E ++ L KE ++ + VID +
Sbjct: 573 QEIKNLGFIPDARSYTILIHGLVKAGFAHE-AYELFYTMKEQGCVLDTRAYNTVIDGFCK 631
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
G + A+ +L++M+ GH TY S++ K+ EA L ++ + + N+
Sbjct: 632 SGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVI 691
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
+ + F +V + D A +++E+ ++ +Y N + K
Sbjct: 692 YSSLIDGFGKVG--------------RIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKA 737
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI-KRNIESGVLAV 571
+ I +AL ++ M+++K P T+ L++G + + + W ++ K+ + V
Sbjct: 738 EEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFT- 796
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y T++ + G + K++ D +Y +
Sbjct: 797 ----YTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNA 834
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 95/233 (40%), Gaps = 28/233 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI AL L A L++M + TY L+ K EA ALL +MRK C
Sbjct: 52 VIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKC 111
Query: 446 LVQNLSCEMVVS-----ERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
+ ++ ++S ER SE D L++EM + I+
Sbjct: 112 VPTAVTYNSLISGLCKAERASEAYD--------------------LLEEMVYSGCIPDIF 151
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
+ I FCK K DAL+++ ++ RP V T+ L+ G ++ L+G
Sbjct: 152 TYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFG-- 209
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
R I+SG + Y +L+ F + G + M ++ M + D + Y +
Sbjct: 210 -RMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTT 261
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 30/201 (14%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K G+ E L + K + + +I ++G ++ A ++L+ M
Sbjct: 191 LIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 250
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D TY +L+ + K+ +A LL QM + L ++ +
Sbjct: 251 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDV-----------------VT 293
Query: 470 FTDTSSLMDK-------SDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
FT SLMD SD A ++ EMR ++ T+Y N+ + +C+ + +A K
Sbjct: 294 FT---SLMDGLCRENRLSD-AVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM 349
Query: 523 RRMQEMKIRPTVETFYYLVYG 543
++EM P V +F ++ G
Sbjct: 350 --LEEMDCPPNVVSFNIMIRG 368
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 107/263 (40%), Gaps = 28/263 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K G+ E LL ++K+ + + +I L + A+D+L++M +
Sbjct: 87 LIDGLCKGGRVDEAVALLSKMRKK--CVPTAVTYNSLISGLCKAERASEAYDLLEEMVYS 144
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM----------RKSCLVQNLSCEMVVSER 459
G D TY +L+T + K K +A + +Q+ SCL+ L E + E
Sbjct: 145 GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 204
Query: 460 ---FSEVADKSASFTDTSSL---------MDKSDLAESLIQEMREEAALSTIYKLNSSIY 507
F + + +T + M K D A +L++ M E + + + +
Sbjct: 205 IDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMN 264
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESG 567
FCK + DA + +M + P V TF L+ G D + G+++R S
Sbjct: 265 GFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSP 324
Query: 568 VLAVSRDLYETLLLNFLQGGYFE 590
+ Y T+L + + E
Sbjct: 325 TVYT----YNTILDGYCRANQLE 343
>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
Length = 642
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 103/461 (22%), Positives = 185/461 (40%), Gaps = 51/461 (11%)
Query: 174 KPDTMIFNLVLHACVRFGSSLKGQHI-MELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
KP + +N V+ ++ G K + E+ ++ D + L +E + D
Sbjct: 194 KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAI 253
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNR---------YREPL 283
+ D++ ++ Y +LL ++FK ++ A +L +M R Y E +
Sbjct: 254 RL---FDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310
Query: 284 PNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGK-----------QEL 332
L + + LR GL P+++ ++++ + GK E+
Sbjct: 311 KG--LGKAGRVDEAYGFYKDMLRDGL----TPDVVFLNNLMNILGKVGRVEELTNVFSEM 364
Query: 333 VLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ 392
++R + S + K + K H SE+S +K + S E T S +ID +
Sbjct: 365 GMWRCTPTVVSYNTVIKALFESKAH--VSEVSSWFDKMKADSVSPSEFTY-SILIDGYCK 421
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
+E A +L++M+ G P Y SL+ A K K + A+ L K+++ +N
Sbjct: 422 TNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELK-----ENFGN 476
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
VS R V K F L + D L EM+ + + +Y N+ + K
Sbjct: 477 ---VSSRVYAVMIK--HFGKCGKLSEAVD----LFNEMKNQGSGPDVYAYNALMSGMVKA 527
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVS 572
MI +A + R+M+E R + + ++ G + + R ++ IK SG+
Sbjct: 528 GMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKH---SGIKP-D 583
Query: 573 RDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y TLL F G FE ++ MK + D + Y S
Sbjct: 584 GVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSS 624
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 87/462 (18%), Positives = 177/462 (38%), Gaps = 57/462 (12%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQR--DELK 232
P+ +N+++ + G + + M G+ + ++ I+ QR D
Sbjct: 407 PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVD-RLCKAQRLDDACS 465
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDA 292
F+ + P A Y E L H + D+ E +LD N+ +PN +
Sbjct: 466 IFEGLDHKTCRPDAVTYCSLIEGL-GRHGRVDEAYKLYEQMLDANQ----IPNAVVYTSL 520
Query: 293 QKPYLISIGSPNLRCG------------LKLQIMPELL----EKDSILKM----EGKQEL 332
+ + +CG L+L P+LL D + K +G+
Sbjct: 521 IRNFF--------KCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALF 572
Query: 333 VLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ 392
+N + R+ LI+G K G E ++ L KE ++ + VID +
Sbjct: 573 QEIKNLGFIPDARSYTILIHGLVKAGFAHE-AYELFYTMKEQGCVLDTRAYNTVIDGFCK 631
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
G + A+ +L++M+ GH TY S++ K+ EA L ++ + + N+
Sbjct: 632 SGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVI 691
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
+ + F +V + D A +++E+ ++ +Y N + K
Sbjct: 692 YSSLIDGFGKVG--------------RIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKA 737
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI-KRNIESGVLAV 571
+ I +AL ++ M+++K P T+ L++G + + + W ++ K+ + V
Sbjct: 738 EEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFT- 796
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y T++ + G + K++ D +Y +
Sbjct: 797 ----YTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNA 834
>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 27/248 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+ L + G A IL +M G D+TTY +LL + F EA+ + +M +
Sbjct: 42 IINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQG 101
Query: 446 LVQNL---SCEMVVSER----------------FSEVADKSASFTDTSSLMDKSDLAESL 486
+V +L S M V R F V D ++ E+L
Sbjct: 102 VVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEAL 161
Query: 487 I--QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
EM E+ + + N+ + CK KM+ DA K++ M E P TF L++GH
Sbjct: 162 KIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGH 221
Query: 545 -SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
M + +++ +RNI+ ++A Y TL+ F + G E+ E+ M +
Sbjct: 222 CQDGNMTKALSLFGTMTQRNIKPDIVA-----YNTLIDGFCKVGEMEKASELWDGMISRK 276
Query: 604 MYVDKLMY 611
++ + + Y
Sbjct: 277 IFPNHITY 284
>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
[Arabidopsis thaliana]
gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 109/230 (47%), Gaps = 23/230 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV----KMFREAEALLKQM 441
VI+AL + G + A D+++DM++ G + +Y +L+ Y K+ KM++ A+A+LK+M
Sbjct: 229 VINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYK-ADAVLKEM 287
Query: 442 RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYK 501
++ + NL+ ++ + F + + S + +EM ++ +
Sbjct: 288 VENDVSPNLTTFNILIDGFWKDDNLPGSM--------------KVFKEMLDQDVKPNVIS 333
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
NS I C G I +A+ + +M ++P + T+ L+ G +M ++ ++G +K
Sbjct: 334 YNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVK 393
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
G + +R +Y L+ + + G + + M+++ + D Y
Sbjct: 394 ---GQGAVPTTR-MYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTY 439
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 105/219 (47%), Gaps = 17/219 (7%)
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
R+ + LI+G K G+ E S + ++ ++ + ++ + V+D L + G ++ A+++L+
Sbjct: 561 RSYSILIHGLTKAGQARETSNIFQAMSQQGFAL-DARAYNAVVDGLCKSGKVDKAYEVLE 619
Query: 405 DMELAG-HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
+M++ HP TY S++ K+ EA L ++ + + N+ + + F +V
Sbjct: 620 EMKVKHVHPT-VATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKV 678
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
+ D A +++EM ++ +Y NS + K + I +AL ++
Sbjct: 679 G--------------RIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQ 724
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
M+EMK P T+ L+ G ++ Y + W ++++
Sbjct: 725 SMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQK 763
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 69/167 (41%), Gaps = 14/167 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I AL + E A ++L M+ G+ + + +L+ A + A AL+ +++ SC
Sbjct: 182 LIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSC 241
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L ++ V + F + D+A E++ S
Sbjct: 242 LEPDIVLYNVCIDCFGKAG--------------SVDMAWKFFHELKAHGLRPDDVSYTSM 287
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
++ CK +G+A +++ +M+ + P + ++ G+ S E + D
Sbjct: 288 VWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDD 334
>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Brachypodium distachyon]
Length = 524
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 121/278 (43%), Gaps = 31/278 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDM-ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
VI G ++A +I+ +M E G D TY ++++ + KV +A + +M
Sbjct: 153 VIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTE 212
Query: 445 CLVQNLS----------CE---MVVSERF-SEVADKSAS--------FTDTSSLMDKSDL 482
V+ + C+ + V+ R+ E+ D+ S F T + ++
Sbjct: 213 GKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAE 272
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A +L++EM E+ + N I +CK A+K++ M IR TV T+ L++
Sbjct: 273 AHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIH 332
Query: 543 GHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
S M ++ L+ D ++R I + +Y L+ + GG +R E++G M+K
Sbjct: 333 ALSMKGMVQETDRLFNDAVRRGIRPDLF-----MYNALINSHCTGGDMDRAFEIMGEMEK 387
Query: 602 QNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKR 639
+ + D + Y + L L RL + E +KR
Sbjct: 388 KRITPDDVTYNT--LMRGLCLLGRLDEARGLIEEMTKR 423
>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
Length = 871
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/425 (20%), Positives = 169/425 (39%), Gaps = 63/425 (14%)
Query: 150 NFLIQLCDV---------FLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIM 200
N LI C + +LHL ++P F +LHA R G+ ++ + +
Sbjct: 286 NILINACCIGGRTWVAIDWLHLMVRSG-----VEPSVATFTTILHALCREGNVVEARKLF 340
Query: 201 ELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLH 260
+ + G+ +A I + + + E+ + +++ T + L+ H
Sbjct: 341 DGIQDMGIAPNAA---IYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGH 397
Query: 261 FKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEK 320
+K+ I+ + L+ D+ + + + ++S R ++++ ELLEK
Sbjct: 398 YKYGRIEDSDRLLKDL------IVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEK 451
Query: 321 DSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES 380
L S A LI Y + G + ++ I S
Sbjct: 452 GLTL------------------SVVAFNSLIGAYSRAGLEDK-AFEAYRIMVRCGFTPSS 492
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
+ C+ ++ L + G+L+ A +L M G P++ Y LL Y+K+ A+ L K+
Sbjct: 493 STCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKE 552
Query: 441 MRK----------SCLVQNLSCEMVVSERFSEVADKSA------SFTDTS---SLMDKSD 481
M++ + L+ LS V E + + SA +F S L D
Sbjct: 553 MKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGR 612
Query: 482 LAESLI--QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
+ E+L +EMR++ LS + N I FC+ + A++ + MQ + + P + TF
Sbjct: 613 VTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNI 672
Query: 540 LVYGH 544
L+ G+
Sbjct: 673 LIGGY 677
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 106/252 (42%), Gaps = 27/252 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ ++ AL + G + A + D ++ G ++ Y +L+ Y+K + +A L ++MR
Sbjct: 321 TTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRT 380
Query: 444 S-----CLVQNLSC-------EMVVSERFSEVADKSASFTDTSSLMD----------KSD 481
+ C+ N+ + S+R + S F D SSL D + D
Sbjct: 381 TGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLD-SSLYDVMVSSLCWAGRLD 439
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
A L+QE+ E+ ++ NS I + + + A + YR M P+ T L+
Sbjct: 440 EAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSLL 499
Query: 542 YGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
G ++ IL + R +E G +++ Y LL + + E + MK+
Sbjct: 500 MGLCRKGWLQEARIL---LYRMLEKG-FPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKE 555
Query: 602 QNMYVDKLMYKS 613
+ +Y D + + +
Sbjct: 556 RGIYPDAVAFTA 567
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 88/212 (41%), Gaps = 16/212 (7%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
A L++GY K N E + L KE + ++ + +ID L + G +E A+++ +
Sbjct: 529 AYTVLLDGYFKM-NNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLE 587
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD 465
M G ++ Y SL+ EA L K+MR+ L+ + ++ + F
Sbjct: 588 MSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRG- 646
Query: 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+ A +M+ L I+ N I +CK + A +I +M
Sbjct: 647 -------------QMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKM 693
Query: 526 QEMKIRPTVETFYYLVYGHSSL-EMYRDITIL 556
+ P + T+ ++G+ + +M + + IL
Sbjct: 694 YSCGLDPDITTYNTYMHGYCRMRKMNQAVIIL 725
>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
Length = 1320
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 18/228 (7%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ L ++G +E ++++M+LAG D+ TY +L+ AY K+ +A LL+ M
Sbjct: 491 NTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLN 550
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
L L V+ F S +++ E LI+ M E+ + N
Sbjct: 551 KRLQPTLVTFNVLMNGFC-----------MSGMLED---GERLIEWMLEKGIMPNATTFN 596
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
S + +C + +IY+ M + + P T+ L+ GH R++ W K
Sbjct: 597 SLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKA---RNMKEAWFLHKEM 653
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+E G +V+ Y+ L+ F + F ++ M+K + +K +Y
Sbjct: 654 VEKG-YSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIY 700
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 18/205 (8%)
Query: 326 MEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD 385
+E +Q L R + N +I+G+ K G S L ++++ T S
Sbjct: 329 VEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTS- 387
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI + + G + A ++ ++M + G D TY +L+ Y K +EA ++ QM +
Sbjct: 388 VIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKG 447
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L N VV+ ++ +AD + D+A L+ EM + +Y N+
Sbjct: 448 LTPN-----VVT--YTALADGLCKNGEI-------DVANELLHEMSRKGLQPNVYTYNTI 493
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKI 530
+ CK IG+ + + M+EM +
Sbjct: 494 VNGLCK---IGNIEQTVKLMEEMDL 515
>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 606
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 90/180 (50%), Gaps = 19/180 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV----KMFREAEALLKQM 441
VI+AL + G + A D+++DM++ G+ + +Y +L+ Y K+ KM++ A+A+LK+M
Sbjct: 229 VINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYK-ADAVLKEM 287
Query: 442 RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYK 501
++ + NL+ ++ + F + + S + +EM ++ + +
Sbjct: 288 VENEVSPNLTTFNILIDGFWKDDNLPGSL--------------KVFKEMLDQDVIPNVIT 333
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
NS I C G I +A+ + +M ++P + T++ L+ G M ++ ++ +K
Sbjct: 334 YNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVK 393
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 100/230 (43%), Gaps = 18/230 (7%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ L + G +E A + D+M G D +Y +LL+ Y KV E+ A+ +M +
Sbjct: 227 NSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQ 286
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
LV + VV+ F+ S + + A +L+ +MRE
Sbjct: 287 RGLVPD-----VVT--FT-------SLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFT 332
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ I FCK + DAL M++ I+P+V + L+ G+ L L ++ R
Sbjct: 333 ALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD----LARELIRE 388
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+E+ + Y T++ + + G + ++ M K+ + D + Y S
Sbjct: 389 MEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSS 438
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 17/228 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++ AL G LE A ++ DM AG ++ TY +L+ A+ + AE ++ MR+
Sbjct: 158 LVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREE- 216
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
N +V S + + + A + EM E + N+
Sbjct: 217 --GNAKPNLVTFN----------SMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTL 264
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
+ +CK + ++L ++ M + + P V TF L++ L ++ E
Sbjct: 265 LSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR---E 321
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G L ++ + L+ F + G+ + + + M+K + + Y +
Sbjct: 322 RG-LRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNA 368
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 83/195 (42%), Gaps = 15/195 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+ K G + L+ +++ E T + +ID + GFL+ A +++M
Sbjct: 299 LIHATCKAGNLEQAVALVAQMRERGLRMNEVTF-TALIDGFCKKGFLDDALLAVEEMRKC 357
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G Y +L+ Y K+ A L+++M + ++ + + +V + ++
Sbjct: 358 GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSA 417
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
F L Q+M ++ L +S I C+ K + DA +++ M ++
Sbjct: 418 F--------------QLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLG 463
Query: 530 IRPTVETFYYLVYGH 544
++P T+ L+ GH
Sbjct: 464 VQPDEFTYTTLIDGH 478
>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 642
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 103/461 (22%), Positives = 184/461 (39%), Gaps = 51/461 (11%)
Query: 174 KPDTMIFNLVLHACVRFGSSLKGQHI-MELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
KP + +N V+ ++ G K + E+ ++ D + L +E + D
Sbjct: 194 KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAI 253
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNR---------YREPL 283
+ D++ ++ Y +LL ++FK ++ A +L +M R Y E +
Sbjct: 254 RL---FDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310
Query: 284 PNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGK-----------QEL 332
L + + LR GL P+++ ++++ + GK E+
Sbjct: 311 KG--LGKAGRVDEAYGFYKDMLRDGL----TPDVVFLNNLMNILGKVGRVEELTNVFSEM 364
Query: 333 VLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ 392
++R + S + K + K H SE+S +K + S E T S +ID +
Sbjct: 365 GMWRCTPTVVSYNTVIKALFESKAH--VSEVSSWFDKMKADSVSPSEFTY-SILIDGYCK 421
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
+E A +L++M+ G P Y SL+ A K K + A L K+++ +N
Sbjct: 422 TNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELK-----ENFGN 476
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
VS R V K F L + D L EM+ + + +Y N+ + K
Sbjct: 477 ---VSSRVYAVMIK--HFGKCGKLSEAVD----LFNEMKNQGSGPDVYAYNALMSGMVKA 527
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVS 572
MI +A + R+M+E R + + ++ G + + R ++ IK SG+
Sbjct: 528 GMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKH---SGIKP-D 583
Query: 573 RDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y TLL F G FE ++ MK + D + Y S
Sbjct: 584 GVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSS 624
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 17/189 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV-KMFREAEALLKQMRKS 444
VI+ L ++G + A D+++DM+ G TY +++ Y K KMF+ A+ALLK+M
Sbjct: 235 VINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFK-ADALLKEMVAK 293
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
+ N ++ + F + +A A+ + +EM+ + + NS
Sbjct: 294 RIHPNEITFNILIDGFCRDENVTA--------------AKKVFEEMQRQGLQPNVVTYNS 339
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI-KRN 563
I C + +AL + +M M ++P V T+ L+ G +M ++ + DI KR
Sbjct: 340 LINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRG 399
Query: 564 IESGVLAVS 572
+ V+ +
Sbjct: 400 LAPNVITFN 408
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I+ L G L+ A + D M G + TY +L+ + K KM +EA +L + K
Sbjct: 338 NSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGK 397
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
L N V++ F+ + D + MD + L S+ M + + N
Sbjct: 398 RGLAPN-----VIT--FNTLIDAYGK----AGRMDDAFLLRSM---MLDTGVCPNVSTYN 443
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
I FC+ + +A K+ + M+ ++ + T+ LV
Sbjct: 444 CLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILV 481
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 22/204 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV-KMFREAEALLKQMRKS 444
VI+ L ++G + A D+++DM+ G TY +++ Y K KMF+ A+ALLK+M
Sbjct: 235 VINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFK-ADALLKEMVAK 293
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
+ N ++ + F + +A A+ + +EM+ + + NS
Sbjct: 294 RIHPNEITFNILIDGFCRDENVTA--------------AKKVFEEMQRQGLQPNVVTYNS 339
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI-KRN 563
I C + +AL + +M M ++P V T+ L+ G +M ++ + DI KR
Sbjct: 340 LINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRG 399
Query: 564 IESGVLAVSRDLYETLLLNFLQGG 587
+ V+ + TL+ + + G
Sbjct: 400 LAPNVIT-----FNTLIDAYGKAG 418
Score = 42.7 bits (99), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I+ L G L+ A + D M G + TY +L+ + K KM +EA +L + K
Sbjct: 338 NSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGK 397
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
L N V++ F+ + D + MD + L S+ M + + N
Sbjct: 398 RGLAPN-----VIT--FNTLIDAYGK----AGRMDDAFLLRSM---MLDTGVCPNVSTYN 443
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
I FC+ + +A K+ + M+ ++ + T+ LV
Sbjct: 444 CLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILV 481
>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63070, mitochondrial; Flags: Precursor
gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 24/269 (8%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ING K G+ +L+ LL+ ++ + + + +ID L + ++ A D+ + ME
Sbjct: 219 GAVINGLCKRGE-PDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKME 277
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY L++ + +A LL M L +N++ ++V F+ + D
Sbjct: 278 TKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDM----LEKNINPDLVF---FNALID-- 328
Query: 468 ASFTDTSSLMDKSDLAESLIQEM-REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+F L++ AE L EM + + + N+ I FCK K + + ++++R M
Sbjct: 329 -AFVKEGKLVE----AEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMS 383
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNFL 584
+ + T+ L++G RD K+ + G V D+ Y LL
Sbjct: 384 QRGLVGNTVTYTTLIHGFFQA---RDCDNAQMVFKQMVSDG---VHPDIMTYNILLDGLC 437
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G E + V YM+K++M +D + Y +
Sbjct: 438 NNGNVETALVVFEYMQKRDMKLDIVTYTT 466
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 16/149 (10%)
Query: 396 LEAAHDILDDMELAGHPMDSTT-YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEM 454
L+ A + DM + P S + LL+A K+ F +L +QM+ + NL
Sbjct: 56 LDDAIGLFGDM-VKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114
Query: 455 VVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKM 514
+ F + S LA +++ +M + +I LNS + FC G
Sbjct: 115 IFINYFCRRSQLS--------------LALAILGKMMKLGYGPSIVTLNSLLNGFCHGNR 160
Query: 515 IGDALKIYRRMQEMKIRPTVETFYYLVYG 543
I +A+ + +M EM +P TF LV+G
Sbjct: 161 ISEAVALVDQMVEMGYQPDTVTFTTLVHG 189
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 76/165 (46%), Gaps = 15/165 (9%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
++D M G+ D+ T+ +L+ ++ EA AL+++M +V+ ++V
Sbjct: 167 LVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM----VVKGCQPDLVTY---- 218
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
+ + + DLA +L+ +M + + + N+ I CK K + DA +
Sbjct: 219 ------GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDL 272
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIE 565
+ +M+ I+P V T+ L+ + + D + L D +++NI
Sbjct: 273 FNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNIN 317
>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
Length = 668
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 111/264 (42%), Gaps = 31/264 (11%)
Query: 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST 416
G E + +L EH +TLC+ VI+++ + G ++ A L++M G D+
Sbjct: 294 RGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTI 353
Query: 417 TYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSS 475
+Y ++L + + + +A+ LLK+M R +C +F
Sbjct: 354 SYTTVLKGLCRAERWNDAKELLKEMVRNNC------------------PPNEVTFNTFIC 395
Query: 476 LMDKSDLAES---LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP 532
++ + L E LI++M+E + N+ + FC I AL+++R M +P
Sbjct: 396 ILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFR---SMPCKP 452
Query: 533 TVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFER 591
T+ L+ G + E L + + R+ V+ + L+ F Q G+ +
Sbjct: 453 NTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVT-----FNVLVNFFCQKGFLDE 507
Query: 592 VMEVIGYMKKQNMYVDKLMYKSEF 615
+E++ M + + + Y + F
Sbjct: 508 AIELVEQMMEHGCTPNLITYNTLF 531
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 25/203 (12%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
A L+ GY ++G L+ S+ ++ + L I L G + A +LDD
Sbjct: 112 AYNTLVAGYCRYGHLDAARRLIGSMPVAPDAYTYTPL----IRVLCDRGRVADALSLLDD 167
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVS-----ER 459
M G + TY LL A K F +A A+L +MR K C ++ ++++ R
Sbjct: 168 MLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGR 227
Query: 460 FSEVAD------------KSASFTDTSSLMDKS---DLAESLIQEMREEAALSTIYKLNS 504
+ D + S+T + S D E L EM E+ + +
Sbjct: 228 VDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDM 287
Query: 505 SIYFFCKGKMIGDALKIYRRMQE 527
I FFC+G M+ A+++ ++M E
Sbjct: 288 LIRFFCRGGMVERAIQVLQQMTE 310
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 93/229 (40%), Gaps = 20/229 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
+I+ + + G ++ A D+L+ + G D+ +Y +LL K + + E L +M K+
Sbjct: 218 IINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKN 277
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
C+ ++ +M++ F ++++ A ++Q+M E + N
Sbjct: 278 CMPNEVTFDMLIR------------FFCRGGMVER---AIQVLQQMTEHECATNTTLCNI 322
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
I CK + DA K M P ++ ++ G E + D L ++ RN
Sbjct: 323 VINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRN- 381
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + T + Q G E+ + +I M++ V + Y +
Sbjct: 382 ---NCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNA 427
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 100/239 (41%), Gaps = 22/239 (9%)
Query: 382 LCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM 441
LC+ +I L + G A +L E +G P+D Y +L+ Y + A L+ M
Sbjct: 77 LCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSM 136
Query: 442 -------RKSCLVQNLSCEMVVSERFSEVAD--------KSASFTDTSSLMDKS---DLA 483
+ L++ L V++ S + D ++T M K+ + A
Sbjct: 137 PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQA 196
Query: 484 ESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+++ EMR + I N I C+ + DA + R+ +P ++ L+ G
Sbjct: 197 MAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKG 256
Query: 544 HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602
+ + + D+ L+ ++ +E + + ++ L+ F +GG ER ++V+ M +
Sbjct: 257 LCASKRWDDVEELFAEM---MEKNCMP-NEVTFDMLIRFFCRGGMVERAIQVLQQMTEH 311
>gi|356519580|ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Glycine max]
Length = 1012
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 122/278 (43%), Gaps = 43/278 (15%)
Query: 348 AKLINGYKKHGKNSELSWLL-----LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
+ ++ G +HGK +E + LL + + H S+ + +I AL++ G + A +
Sbjct: 275 SSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSY------TTIISALLKSGRVMEAFNH 328
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462
M + G +D +++ +K +EAE + + + K LV N + + +
Sbjct: 329 QSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCK 388
Query: 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
V D + AE+++Q+M +E L + +S I + K M+ A+++
Sbjct: 389 VGD--------------VEFAETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVL 434
Query: 523 RRMQEMKIRPTVETFYYLVYGH-------SSLEMYRDITILWGDIKRNIESGVLAVSRDL 575
R+M +M I P V + L+ G+ ++ Y+++ WG + NI +
Sbjct: 435 RKMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEMKS-WGLEENNI----------I 483
Query: 576 YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++ LL N + G + +I + + +Y+D Y S
Sbjct: 484 FDILLNNLKRSGGMKEAQSLIKDILSKGIYLDVFNYSS 521
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 86/198 (43%), Gaps = 8/198 (4%)
Query: 353 GYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHP 412
G+ K G + LL + K+ F +S C+ ++ Q+G ++ A I+ ++ G P
Sbjct: 84 GFCKRGLADQGFGLLSEMVKKGVCF-DSVTCNILVKGYCQIGLVQYAEWIMGNLVGGGVP 142
Query: 413 MDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTD 472
+D+ +L+ Y +V + A L++ K+ + ++ + F + D + + +
Sbjct: 143 LDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVTYNTLVNAFCKRGDLAKAESV 202
Query: 473 TSSLMD-KSDLAESLIQEMREEA------ALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+ ++ + D ++ + E T+ + I +CK + I D +Y +M
Sbjct: 203 VNEILGFRRDDESGVLNDCGVETWDGLRDLQPTVVTWTTLIAAYCKHRGIDDFFSLYEQM 262
Query: 526 QEMKIRPTVETFYYLVYG 543
+ P V T ++YG
Sbjct: 263 IMSGVMPDVVTCSSILYG 280
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 18/160 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I L +LG + A+ +L +M + G D TY +L+ Y +A QM
Sbjct: 694 NTLITVLCRLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLV 753
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAAL--STIYK 501
S + N++ + E S T+ LM +D L+ EMRE + +T Y
Sbjct: 754 SGISPNITTYNALLEGLS-----------TNGLMRDAD---KLVSEMRERGLVPNATTYN 799
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+ S + K D++K+Y M PT T+ L+
Sbjct: 800 ILVSGHGRVGNKR--DSIKLYCEMITKGFIPTTGTYNVLI 837
>gi|356540087|ref|XP_003538522.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Glycine max]
Length = 667
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + KHG +S L WL ++ + G+ L S++ID +L A I +
Sbjct: 183 STLITCFGKHGLFDSSLFWL--QQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRL 240
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL------VQNLSCEMVVSERF 460
+ + D Y S++ + K K+FREA LL++MR + + L V +++F
Sbjct: 241 KASTITPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKF 300
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E + + +D + A+ L MR+ + N+
Sbjct: 301 VEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTL 360
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMYRDITILWGDIKRN 563
+ + + + G+A+ ++R MQ ++ V T+ + +YG +LE + ++ KR
Sbjct: 361 LRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYG-KTLEHEKATNLIQEMNKRG 419
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 420 IEPNAIT-----YSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYER 471
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 100/241 (41%), Gaps = 35/241 (14%)
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE 458
AH + D+M G D TY +L+T + K +F + L+QM + N+S ++V+
Sbjct: 163 AHGLFDEMRQKGLSPDRYTYSTLITCFGKHGLFDSSLFWLQQMEQ----DNVSGDLVLYS 218
Query: 459 RFSEVADKSASFTDTSSLMDK-------SDL------------------AESLIQEMREE 493
++A K + ++ S+ + DL A L+QEMR+
Sbjct: 219 NLIDLARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVFGKAKLFREARLLLQEMRDN 278
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI 553
A ++ + + + +AL ++ M E K + T ++ + L M ++
Sbjct: 279 AVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEA 338
Query: 554 T-ILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
+ W K I+ V++ Y TLL + + F + + M+ +++ + + Y
Sbjct: 339 DRLFWSMRKMGIQPNVIS-----YNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYN 393
Query: 613 S 613
+
Sbjct: 394 T 394
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 100/230 (43%), Gaps = 18/230 (7%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ L + G +E A + D+M G D +Y +LL+ Y KV E+ A+ +M +
Sbjct: 85 NSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQ 144
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
LV + VV+ F+ S + + A +L+ +MRE
Sbjct: 145 RGLVPD-----VVT--FT-------SLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFT 190
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ I FCK + DAL M++ I+P+V + L+ G+ L L ++ R
Sbjct: 191 ALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD----LARELIRE 246
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+E+ + Y T++ + + G + ++ M K+ + D + Y S
Sbjct: 247 MEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSS 296
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 17/228 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++ AL G LE A ++ DM AG ++ TY +L+ A+ + AE ++ MR+
Sbjct: 16 LVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREE- 74
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
N +V S + + + A + EM E + N+
Sbjct: 75 --GNAKPNLVTFN----------SMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTL 122
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
+ +CK + ++L ++ M + + P V TF L++ L ++ E
Sbjct: 123 LSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR---E 179
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G L ++ + L+ F + G+ + + + M+K + + Y +
Sbjct: 180 RG-LRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNA 226
Score = 47.0 bits (110), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 83/195 (42%), Gaps = 15/195 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+ K G + L+ +++ E T + +ID + GFL+ A +++M
Sbjct: 157 LIHATCKAGNLEQAVALVAQMRERGLRMNEVTF-TALIDGFCKKGFLDDALLAVEEMRKC 215
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G Y +L+ Y K+ A L+++M + ++ + + +V + ++
Sbjct: 216 GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSA 275
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
F L Q+M ++ L +S I C+ K + DA +++ M ++
Sbjct: 276 F--------------QLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLG 321
Query: 530 IRPTVETFYYLVYGH 544
++P T+ L+ GH
Sbjct: 322 VQPDEFTYTTLIDGH 336
>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 108/256 (42%), Gaps = 26/256 (10%)
Query: 380 STLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK 439
S L S +I L +LG +E A D+ + + AG + Y ++++AY + REA + +
Sbjct: 200 SKLASIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQ 259
Query: 440 QMRKSCLVQNLSCEMVVSER--------------FSEVADKSA-----SFTDTSSLMDKS 480
M+K+ NL + + F E+ + +F ++ +
Sbjct: 260 AMKKAGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRG 319
Query: 481 DLAES---LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
L E + EM+ I+ N+ I CKG + A I M+ I P V T+
Sbjct: 320 GLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTY 379
Query: 538 YYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIG 597
++ G+ L + + L+ D+K ESGV R Y TL+ + + G F+ +
Sbjct: 380 STMIDGYGKLGCFEEAISLYHDMK---ESGVRP-DRVSYNTLIDIYAKLGRFDDALIACK 435
Query: 598 YMKKQNMYVDKLMYKS 613
M++ + D + Y +
Sbjct: 436 DMERVGLKADVVTYNA 451
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 95/228 (41%), Gaps = 30/228 (13%)
Query: 325 KMEGKQELVLFRNGKLLHSNRAM-AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC 383
+ME ++ GK + N + +I+GY K G E L +H ES +
Sbjct: 356 QMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISL-------YHDMKESGVR 408
Query: 384 SD------VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
D +ID +LG + A DME G D TY +L+ AY K +++A L
Sbjct: 409 PDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACL 468
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
+M+ LV N+ + + +S K+ D S ++ E +
Sbjct: 469 FDKMKGEGLVPNVLTYSALIDSYS----KAGMHQDVS----------NVFTEFKRAGLKP 514
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV--YG 543
+ +S I CK ++ DA+ + + M + I+P + T+ L+ YG
Sbjct: 515 DVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYG 562
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/291 (19%), Positives = 122/291 (41%), Gaps = 29/291 (9%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF-LEAAHDILD 404
A + +++ Y + G+ E + ++KK T + +IDA + G L+ A DI D
Sbjct: 237 AYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITY-NTIIDACGKGGVDLKQALDIFD 295
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN--------------- 449
+M+ G D T+ SL+ + ++ +++ + +M++ + Q+
Sbjct: 296 EMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGG 355
Query: 450 ---LSCEMVVSERFSEVADKSASFT---DTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
L+ ++ + R ++ +++ D + + A SL +M+E N
Sbjct: 356 QMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYN 415
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-R 562
+ I + K DAL + M+ + ++ V T+ L+ + Y+D L+ +K
Sbjct: 416 TLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGE 475
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ VL Y L+ ++ + G + V V K+ + D ++Y S
Sbjct: 476 GLVPNVLT-----YSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSS 521
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 77/368 (20%), Positives = 140/368 (38%), Gaps = 61/368 (16%)
Query: 152 LIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD 211
L Q D+F + E ++PD + FN ++ C R G Q + M + G+ D
Sbjct: 287 LKQALDIFDEMQKEG------VEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQD 340
Query: 212 AHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGE 271
I + + C+ +++ + + Y +++ + K + A
Sbjct: 341 ---IFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAIS 397
Query: 272 LILDMNRYREPLPNPKLRQDAQKPYLIS------------------IGSPNL-RCGLKLQ 312
L DM ++ +P +S I ++ R GLK
Sbjct: 398 LYHDM------------KESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLK-- 443
Query: 313 IMPELLEKDSILKMEGKQ-----ELVLF---RNGKLLHSNRAMAKLINGYKKHGKNSELS 364
+++ ++++ GKQ LF + L+ + + LI+ Y K G + ++S
Sbjct: 444 --ADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVS 501
Query: 365 WLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424
+ K+ + L S +ID+ + G +E A +L +M AG + TY SL+ A
Sbjct: 502 NVFTEFKRAGLK-PDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDA 560
Query: 425 YYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE 484
Y + + EA+ M S VQ + ER EV K +S A
Sbjct: 561 YGRYGQADKLEAVKANMPNS--VQK------IGERSMEVVRKPPPSQQNASDHTGVLAAV 612
Query: 485 SLIQEMRE 492
S+ EM++
Sbjct: 613 SVFHEMQQ 620
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 100/233 (42%), Gaps = 24/233 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ V++ + + G +E A + D+M G D +Y +L+ Y KV EA ++ +M +
Sbjct: 231 NSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTR 290
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS---DLAESLIQEMREEAALSTIY 500
++ ++ +FT +M K+ + A L++EMRE
Sbjct: 291 KGIMPDV-----------------VTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEI 333
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
+ I FCK + DAL R M++ +I+P+V + L+ G+ + + ++
Sbjct: 334 TFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEAR----EL 389
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
R +E+ + Y T+L + + G ++ M + + D + Y S
Sbjct: 390 VREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSS 442
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 14/159 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID + GFL+ A + +M Y +L+ Y V EA L+++M
Sbjct: 338 LIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKG 397
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ ++ + + + D ++F L Q+M E L +S
Sbjct: 398 VKPDVVTYSTILSAYCKNGDTHSAF--------------QLNQQMLENGVLPDAITYSSL 443
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
I C+ K +GDA +++ M + ++P T+ L+ GH
Sbjct: 444 IRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGH 482
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 88/219 (40%), Gaps = 20/219 (9%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
L +A D M G + TY L+ A +EA ++L+ MR + N
Sbjct: 138 LPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNT 197
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+ F + D AE L+ MRE + NS + CK +
Sbjct: 198 LVAAFCRAGE--------------VDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRM 243
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRD 574
DA K++ M + + P ++ LV G+ + + ++ ++ R I V+
Sbjct: 244 EDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVT---- 299
Query: 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ +L+ + G ER + ++ M+++ + ++++ + +
Sbjct: 300 -FTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTA 337
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 100/230 (43%), Gaps = 18/230 (7%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ L + G +E A + D+M G D +Y +LL+ Y KV E+ A+ +M +
Sbjct: 227 NSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQ 286
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
LV + VV+ F+ S + + A +L+ +MRE
Sbjct: 287 RGLVPD-----VVT--FT-------SLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFT 332
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ I FCK + DAL M++ I+P+V + L+ G+ L L ++ R
Sbjct: 333 ALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD----LARELIRE 388
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+E+ + Y T++ + + G + ++ M K+ + D + Y S
Sbjct: 389 MEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSS 438
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 17/228 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++ AL G LE A ++ DM AG ++ TY +L+ A+ + AE ++ MR+
Sbjct: 158 LVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREE- 216
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
N +V S + + + A + EM E + N+
Sbjct: 217 --GNAKPNLVTFN----------SMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTL 264
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
+ +CK + ++L ++ M + + P V TF L++ L ++ E
Sbjct: 265 LSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR---E 321
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G L ++ + L+ F + G+ + + + M+K + + Y +
Sbjct: 322 RG-LRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNA 368
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 83/195 (42%), Gaps = 15/195 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+ K G + L+ +++ E T + +ID + GFL+ A +++M
Sbjct: 299 LIHATCKAGNLEQAVALVAQMRERGLRMNEVTF-TALIDGFCKKGFLDDALLAVEEMRKC 357
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G Y +L+ Y K+ A L+++M + ++ + + +V + ++
Sbjct: 358 GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSA 417
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
F L Q+M ++ L +S I C+ K + DA +++ M ++
Sbjct: 418 F--------------QLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLG 463
Query: 530 IRPTVETFYYLVYGH 544
++P T+ L+ GH
Sbjct: 464 VQPDEFTYTTLIDGH 478
>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 27/248 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+ L + G A IL +M G D+TTY +LL + F EA+ + +M +
Sbjct: 194 IINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQG 253
Query: 446 LVQNL---SCEMVVSER----------------FSEVADKSASFTDTSSLMDKSDLAESL 486
+V +L S + V R F V D ++ E+L
Sbjct: 254 VVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEAL 313
Query: 487 I--QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
EM E+ + + N+ + CK KM+ DA K++ M E P TF L++GH
Sbjct: 314 KIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGH 373
Query: 545 -SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
M + +++ +RNI+ ++A Y TL+ F + G E+ E+ M +
Sbjct: 374 CQDGNMTKALSLFGTMTQRNIKPDIVA-----YNTLIDGFCKVGEMEKASELWDGMISRK 428
Query: 604 MYVDKLMY 611
++ + + Y
Sbjct: 429 IFPNHITY 436
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 88/399 (22%), Positives = 153/399 (38%), Gaps = 57/399 (14%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRD--- 229
+ PDT +N +L R + + + I M + GVV D S L + N D
Sbjct: 219 LSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQAL 278
Query: 230 ----ELKKFKCYIDQ-LSTPFAHHYQQFYESLLSLHFKFDDIDAAGEL-ILDMNRYREPL 283
++KKF D + T H Y + L +L + + ++ L ++ N L
Sbjct: 279 VYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGL 338
Query: 284 PNPKLRQDAQKPY--LISIGSPNLRCGLKLQIMPELLEKDSILK---MEGKQELVLFRNG 338
K+ DA K + ++ G+ +P+ +++ +G L G
Sbjct: 339 CKEKMLTDADKLFDEMVERGA-----------LPDFYTFTTLIHGHCQDGNMTKALSLFG 387
Query: 339 KLLHSN-----RAMAKLINGYKKHG---KNSELSWLLLS--IKKEHHSFGESTLCSDVID 388
+ N A LI+G+ K G K SEL ++S I H ++G +I+
Sbjct: 388 TMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGI------LIN 441
Query: 389 ALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLV 447
A +G + A + D M G T +++ Y + +A+ L +M K
Sbjct: 442 AYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAP 501
Query: 448 QNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIY 507
++S +++ E D D A I +M +E L I N +
Sbjct: 502 DHISYNTLINGFVRE---------------DNMDKAFLWINKMEKEGLLPDIITYNVVMN 546
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546
FC+ + +A + R+M E I P T+ L+ GH +
Sbjct: 547 GFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVT 585
>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
Length = 866
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 112/258 (43%), Gaps = 24/258 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGF-LEAAHDILDDME 407
LIN Y ++GK LL +KKE S S L + VI++ + G E + +M
Sbjct: 184 LINSYGRNGKYEVSLELLERMKKERVS--PSILTYNTVINSCARGGLDWEGLLGLFAEMR 241
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY +LL A + EAE + + M + +V +++ +
Sbjct: 242 HEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYL----------- 290
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
DT +++ D L++EM + I N + + + I DA ++R MQE
Sbjct: 291 ---VDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQE 347
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQG 586
P ET+ L+ + Y ++ L+ ++K N E Y TL+ F +G
Sbjct: 348 AGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAAT-----YNTLIDVFGEG 402
Query: 587 GYFERVMEVIGYMKKQNM 604
GYF+ V+ + M ++N+
Sbjct: 403 GYFKEVVTLFHDMAEENV 420
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/335 (21%), Positives = 134/335 (40%), Gaps = 54/335 (16%)
Query: 313 IMPELLEKDSIL-----KMEGKQELVLFRN---GKLLHSNRAMAKLINGYKKHGKNSELS 364
I P+++ +++L + G + ++FR G ++ L++ + K + ++S
Sbjct: 245 IQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVS 304
Query: 365 WLLLSIKKEHHSFGESTLCSD---VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSL 421
LL KE S G S +++A ++G +E A + M+ AG ++ TY L
Sbjct: 305 ELL----KEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSIL 360
Query: 422 LTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDK-- 479
L Y K + E L +M+ V N + +V + F + +L
Sbjct: 361 LGLYGKHGRYDEVRELFLEMK----VSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMA 416
Query: 480 -----------------------SDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
D A+ ++ M E+ + + I + + M
Sbjct: 417 EENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYE 476
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD---ITILWGDIKRNIESGVLAVSR 573
+AL M EM +PT+ET+ L+Y + +Y++ I + GD +A R
Sbjct: 477 EALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKMGDFG-------VARER 529
Query: 574 DLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDK 608
D + ++ F QGG FE ++ M+K + D+
Sbjct: 530 DSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDE 564
>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 754
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 111/257 (43%), Gaps = 22/257 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF-LEAAHDILDDMEL 408
LIN Y +HG+ E+S LL K+ + VI++ + G E + +M
Sbjct: 183 LINSYGRHGQ-YEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRH 241
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G D TY +LL A + EAE + + M + +V +++ + E F +
Sbjct: 242 EGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGK------ 295
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
++K + L++EM L I N + + I A+ ++R+MQE
Sbjct: 296 --------LNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEA 347
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGG 587
+ P T+ L+ + Y D+ L+ ++K N E V Y L+ F +GG
Sbjct: 348 RCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDV-----GTYNVLIEVFGEGG 402
Query: 588 YFERVMEVIGYMKKQNM 604
YF+ V+ + M ++N+
Sbjct: 403 YFKEVVTLFHDMVEENV 419
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 115/290 (39%), Gaps = 62/290 (21%)
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
T ++++ +L LE ++L +ME +G+ D ++Y LL AY R A + +Q
Sbjct: 284 TTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQ 343
Query: 441 MRKSCLVQN----------------------LSCEMVVSER---------FSEVADKSAS 469
M+++ V N L EM VS EV +
Sbjct: 344 MQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGY 403
Query: 470 FTDTSSLM----------------------DKSDL---AESLIQEMREEAALSTIYKLNS 504
F + +L K L A+ ++ M E+ + +
Sbjct: 404 FKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTG 463
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRN 563
I + + +AL ++ M EM +PTVET+ L+ + +Y++ I+W +
Sbjct: 464 VIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMW----KM 519
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
ESGV A RD + ++ + QGG FE ++ ++K D+ +++
Sbjct: 520 GESGV-ARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEA 568
>gi|356569143|ref|XP_003552765.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Glycine max]
Length = 658
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 130/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + KHG +S L WL ++ + G+ L S++ID +L A I +
Sbjct: 174 STLITSFGKHGLFDSSLFWL--QQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRL 231
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL------VQNLSCEMVVSERF 460
+ + D Y S++ + K K+FREA LL++MR + + L V +++F
Sbjct: 232 KASTISPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKF 291
Query: 461 SEV---------ADKSASFTDTSSLMD------KSDLAESLIQEMREEAALSTIYKLNSS 505
E A T + ++D A+ L MR+ + N+
Sbjct: 292 VEALSLFFEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVVSYNTL 351
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMYRDITILWGDIKRN 563
+ + + + G+A+ ++R MQ ++ V T+ + +YG +LE + ++ KR
Sbjct: 352 LRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYG-KTLEHEKATNLIQEMKKRG 410
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 411 IEPNAIT-----YSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYER 462
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 101/241 (41%), Gaps = 35/241 (14%)
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE 458
AH + D+M G D TY +L+T++ K +F + L+QM + N+S ++V+
Sbjct: 154 AHGLFDEMRQKGLSPDRYTYSTLITSFGKHGLFDSSLFWLQQMEQ----DNVSGDLVLYS 209
Query: 459 RFSEVADKSASFTDTSSLMDK-------SDL------------------AESLIQEMREE 493
++A K + ++ S+ + DL A L+QEMR+
Sbjct: 210 NLIDLARKLSDYSKAISIFSRLKASTISPDLIAYNSMINVFGKAKLFREARLLLQEMRDN 269
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI 553
A ++ + + + +AL ++ M E K + T ++ + L M ++
Sbjct: 270 AVQPDTVSYSTLLAIYVDNQKFVEALSLFFEMNEAKCPLDLTTCNIMIDVYGQLHMPKEA 329
Query: 554 T-ILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
+ W K I+ V++ Y TLL + + F + + M+ +++ + + Y
Sbjct: 330 DRLFWSMRKMGIQPNVVS-----YNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYN 384
Query: 613 S 613
+
Sbjct: 385 T 385
>gi|449459510|ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Cucumis sativus]
gi|449530101|ref|XP_004172035.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Cucumis sativus]
Length = 680
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 131/297 (44%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 198 STLITYFGKEGMFDAALSWL--QKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRL 255
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR------KSCLVQNLSCEMVVSERF 460
+ +G D Y +++ + K K+FREA LLK+MR + L V +E+F
Sbjct: 256 KRSGITPDIVAYNTMINVFGKAKLFREARFLLKEMRAVDVMPDTVSYSTLLNMFVENEKF 315
Query: 461 -------SEVADKSASF--------TDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
SE+ + + D +D A+ L MR+ + N+
Sbjct: 316 LEALSVISEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWRMRKIGIEPNVVSYNTI 375
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMYRDITILWGDIKRN 563
+ + + ++ G+A+ ++R MQ +I+ V T+ + +YG +LE + ++ KR
Sbjct: 376 LRVYGEAELFGEAIHLFRLMQRKEIKQNVVTYNTMIKIYG-KTLEHEKATNLVQDMQKRG 434
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ +D+++Y++ + + K
Sbjct: 435 IEPNAIT-----YSTIISIWGKAGKLDRSAMLFQKLRSSGAEIDQVLYQTMIVAYEK 486
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
E AH + D+M D TY +L+T + K MF A + L++M + +S ++V+
Sbjct: 176 ELAHGLFDEMRQRALAADRYTYSTLITYFGKEGMFDAALSWLQKMEQ----DRVSGDLVL 231
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
E++ K ++ A S+ ++ I N+ I F K K+
Sbjct: 232 YSNLIELSRKLCDYSK----------AISIFSRLKRSGITPDIVAYNTMINVFGKAKLFR 281
Query: 517 DALKIYRRMQEMKIRPTVETFYYLV 541
+A + + M+ + + P ++ L+
Sbjct: 282 EARFLLKEMRAVDVMPDTVSYSTLL 306
>gi|225452658|ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic [Vitis vinifera]
gi|296087770|emb|CBI35026.3| unnamed protein product [Vitis vinifera]
Length = 675
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 130/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G +S LSWL ++ G+ L S++I+ +L A I +
Sbjct: 194 STLITHFGKEGMFDSALSWL--QKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRL 251
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVS-------- 457
+ +G D Y S++ + K K+FREA LL +MR ++ + +S ++S
Sbjct: 252 KRSGISPDLVAYNSMINVFGKAKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKY 311
Query: 458 ----ERFSEVADKSASF--------TDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
FSE+ + D +D + A+ L MR+ I N+
Sbjct: 312 VEALSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNTL 371
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMYRDITILWGDIKRN 563
+ + + ++ G+A+ ++R MQ I V T+ + +YG SLE + ++ R
Sbjct: 372 LRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYG-KSLEHEKATNLVQEMQNRG 430
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 431 IEPNAIT-----YSTIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQTMIVAYER 482
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 60/302 (19%), Positives = 124/302 (41%), Gaps = 37/302 (12%)
Query: 364 SWLLLSIKKEHHSFGESTLCSDV-IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422
S LL E S+ S +V I +++ E AH + ++M D TY +L+
Sbjct: 138 SLALLDWINEEASYSPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLI 197
Query: 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDK--- 479
T + K MF A + L++M + +S ++V+ E++ K ++ S+ +
Sbjct: 198 THFGKEGMFDSALSWLQKMEQ----DRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKR 253
Query: 480 ----SDL------------------AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGD 517
DL A L+ EMR + ++ + + + +
Sbjct: 254 SGISPDLVAYNSMINVFGKAKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVE 313
Query: 518 ALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDIT-ILWGDIKRNIESGVLAVSRDLY 576
AL ++ M E++ + T ++ + L+M ++ + W K IE G+++ Y
Sbjct: 314 ALSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVS-----Y 368
Query: 577 ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQ 636
TLL + + F + + M+++++ + + Y + + K L K +N E Q
Sbjct: 369 NTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHE-KATNLVQEMQ 427
Query: 637 SK 638
++
Sbjct: 428 NR 429
>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Brachypodium distachyon]
Length = 571
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 106/252 (42%), Gaps = 32/252 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK----VKMFREAEALLKQM 441
VI L + G L A D+ D+ G TY +++ Y K +M+ +ALLK+M
Sbjct: 191 VISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMY-HVDALLKEM 249
Query: 442 RKS----------------CLVQNLSCEMVVSERFSEVADKSASFTDTSSLM------DK 479
++ C N + + V E + +AS S+L+ K
Sbjct: 250 VEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQ-QGIAASVVTYSALVWGLCSEGK 308
Query: 480 SDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
+ L+ EM++ + + LNS + FCK M+ DA M++ ++P V T+
Sbjct: 309 VEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTI 368
Query: 540 LVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
LV G+ L+ +D +K + + + +Y L+ F + G + V ++ M
Sbjct: 369 LVDGYRRLDKMKDALA----VKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEM 424
Query: 600 KKQNMYVDKLMY 611
+ + + D + Y
Sbjct: 425 RMKGVRADIVTY 436
>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 77/379 (20%), Positives = 158/379 (41%), Gaps = 39/379 (10%)
Query: 251 QFYESLLSLHFKFDDIDAAGELILDMNRYREPLPN----PKLRQDAQKPYLISIGSPNLR 306
+ Y +L+ ++FK ++ A L+ +M R R +P +L + K + +
Sbjct: 267 KIYTTLMGIYFKLGKVEEALNLVHEM-RMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYK 325
Query: 307 CGLKLQIMPELLEKDSILKMEG-----KQELVLFRNGKLLHSNRAMAK----LINGYKKH 357
LK P+++ ++++ + G K+ + LF +LL+ + + + ++
Sbjct: 326 NMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDK 385
Query: 358 GKNSELSWLLLSIKKEH---HSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMD 414
SE S L +KK+ SF S L ID + +E A +L++M+ G P
Sbjct: 386 APPSEASSWLERMKKDGVVPSSFTYSIL----IDGFCKTNRVEKALLLLEEMDEKGFPPC 441
Query: 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTS 474
Y SL+ + K K + A L ++++++C ++ V+ + F K F +
Sbjct: 442 PAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFG----KCGRFNE-- 495
Query: 475 SLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
A L EM++ + +Y N+ I + M+ +A ++R M+E P +
Sbjct: 496 --------AMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDI 547
Query: 535 ETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVME 594
+ ++ G + + ++ +K S + Y T+L + G FE +
Sbjct: 548 NSHNIILNGLARTGGPKRAMEMFAKMK----SSTIKPDAVSYNTVLGCLSRAGLFEEATK 603
Query: 595 VIGYMKKQNMYVDKLMYKS 613
++ M + D + Y S
Sbjct: 604 LMKEMNSKGFEYDLITYSS 622
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 15/152 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPM-DSTTYKSLLTAYYKVKMFREAEALLKQMR 442
+ VI L+Q G E H++ ++M GH D+ TY +L++A+ K+ A L +M+
Sbjct: 199 NSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEMK 258
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
++ L A + + K + A +L+ EMR + T+Y
Sbjct: 259 ENGL--------------QPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTY 304
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
I K + DA +Y+ M + +P V
Sbjct: 305 TELIRGLGKSGRVEDAYGVYKNMLKDGCKPDV 336
>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 108/256 (42%), Gaps = 26/256 (10%)
Query: 380 STLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK 439
S L S +I L +LG +E A D+ + + AG + Y ++++AY + REA + +
Sbjct: 199 SKLASIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQ 258
Query: 440 QMRKSCLVQNLSCEMVVSER--------------FSEVADKSA-----SFTDTSSLMDKS 480
M+K+ NL + + F E+ + +F ++ +
Sbjct: 259 AMKKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRG 318
Query: 481 DLAES---LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
L E + EM+ I+ N+ I CKG + A I M+ I P V T+
Sbjct: 319 SLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTY 378
Query: 538 YYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIG 597
++ G+ L + + L+ D+K ESGV R Y TL+ + + G F+ +
Sbjct: 379 STMIDGYGKLGCFEEAIGLYHDMK---ESGVRP-DRVSYNTLIDIYAKLGRFDDALTACK 434
Query: 598 YMKKQNMYVDKLMYKS 613
M++ + D + Y +
Sbjct: 435 DMERVGLKADVVTYNA 450
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 29/207 (14%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD------VIDALIQLGFLEAAHD 401
+ +I+GY K G E L +H ES + D +ID +LG + A
Sbjct: 379 STMIDGYGKLGCFEEAIGL-------YHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALT 431
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
DME G D TY +L+ AY K +++A L +M+ LV N+ + + +S
Sbjct: 432 ACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYS 491
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
K+ D A S+ E + + +S I CK ++ DA+ +
Sbjct: 492 ----KAGMHQD----------ATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVL 537
Query: 522 YRRMQEMKIRPTVETFYYLV--YGHSS 546
+ M + I+P + T+ L+ YG +
Sbjct: 538 LQEMTQAGIQPNIVTYNSLIDAYGRNG 564
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 102/229 (44%), Gaps = 20/229 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+IDA+ + G +E A I+ M L + TY +++ Y K+ F EA L M++S
Sbjct: 346 LIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESG 405
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
V +R S + D + + + D A + ++M + + N+
Sbjct: 406 ---------VRPDRVS-----YNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNAL 451
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NI 564
I + K DA ++ +M+ + P V T+ L+ +S M++D T ++ + KR +
Sbjct: 452 IDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGL 511
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ V+ LY +L+ + + G E + ++ M + + + + Y S
Sbjct: 512 KPDVV-----LYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNS 555
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 14/173 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID +LG E A + DM+ +G D +Y +L+ Y K+ F +A K M +
Sbjct: 379 STMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMER 438
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
L ++V + K + D + L DK M+ E + + +
Sbjct: 439 V----GLKADVVTYNALIDAYGKQGKYKDAAGLFDK----------MKAEGLVPNVLTYS 484
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
+ I + K M DA I+ + ++P V + L+ + D +L
Sbjct: 485 ALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVL 537
>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
Length = 692
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 109/243 (44%), Gaps = 22/243 (9%)
Query: 373 EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
EH + + + +ID + + G LE AH+IL+ M G + Y +LL + +
Sbjct: 327 EHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWE 386
Query: 433 EAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491
E E LL +M K C + +++ ++V F + L+D+ L+++M
Sbjct: 387 ETEELLAEMFDKDCPLDDVTFNILV------------DFFCQNGLVDR---VIELLEQML 431
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYR 551
E + + + I FCK +I +A+ + + M +P ++ ++ G S E +
Sbjct: 432 EHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWV 491
Query: 552 DITILWGDIKRNIESGVLAVSRDLYETLLLNFL-QGGYFERVMEVIGYMKKQNMYVDKLM 610
D L + + I+ G ++ + T L+NFL + G E+ +E++ M D +
Sbjct: 492 DAEDL---MSQMIQQGC-PLNPITFNT-LINFLCKKGLVEQAIELLKQMLVNGCSPDLIS 546
Query: 611 YKS 613
Y +
Sbjct: 547 YST 549
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 46/234 (19%), Positives = 92/234 (39%), Gaps = 24/234 (10%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ V++A+ G ++ A +L D+ G D +Y ++L K + + L+++M
Sbjct: 232 CNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMV 291
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE---SLIQEMREEAALSTI 499
+ N+ +F S + ++ L E ++ +M E I
Sbjct: 292 RMACPPNI-----------------VTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDI 334
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD 559
+ I CK + A +I RM ++P V + L+ G S E + + L +
Sbjct: 335 RMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAE 394
Query: 560 IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + + L+ F Q G +RV+E++ M + D + Y +
Sbjct: 395 MFDKD----CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTT 444
>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
gi|224033903|gb|ACN36027.1| unknown [Zea mays]
Length = 655
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 109/243 (44%), Gaps = 22/243 (9%)
Query: 373 EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
EH + + + +ID + + G LE AH+IL+ M G + Y +LL + +
Sbjct: 290 EHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWE 349
Query: 433 EAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491
E E LL +M K C + +++ ++V F + L+D+ L+++M
Sbjct: 350 ETEELLAEMFDKDCPLDDVTFNILV------------DFFCQNGLVDR---VIELLEQML 394
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYR 551
E + + + I FCK +I +A+ + + M +P ++ ++ G S E +
Sbjct: 395 ERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWV 454
Query: 552 DITILWGDIKRNIESGVLAVSRDLYETLLLNFL-QGGYFERVMEVIGYMKKQNMYVDKLM 610
D L + + I+ G ++ + T L+NFL + G E+ +E++ M D +
Sbjct: 455 DAEDL---MSQMIQQGC-PLNPITFNT-LINFLCKKGLVEQAIELLKQMLVNGCSPDLIS 509
Query: 611 YKS 613
Y +
Sbjct: 510 YST 512
Score = 38.9 bits (89), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 24/234 (10%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ V++A+ G ++ A +L D+ G D +Y ++L K + + L+++M
Sbjct: 195 CNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMV 254
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE---SLIQEMREEAALSTI 499
+ N+ +F S + ++ L E ++ +M E I
Sbjct: 255 RMACPPNI-----------------VTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDI 297
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD 559
+ I CK + A +I RM ++P V + L+ G S E + + L +
Sbjct: 298 RMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAE 357
Query: 560 IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + + L+ F Q G +RV+E++ M ++ D + Y +
Sbjct: 358 MFDKD----CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTT 407
>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
Length = 695
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 105/507 (20%), Positives = 201/507 (39%), Gaps = 69/507 (13%)
Query: 139 VKTEIGTCLASNFLIQ-LCDVFLHLSAEKSNG---AELIKPDTMIFNLVLHACVRFGSSL 194
V++ + + + N L++ L V H + G A +PDT +N + ACV G
Sbjct: 116 VRSPLPSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLD 175
Query: 195 KGQHIMELM--SQTGVVADAHSI-IILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQ 251
+ ++ M S+ DA S +++A + D LK F +D+ P Q
Sbjct: 176 EALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAP----NQI 231
Query: 252 FYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIG---SPNLRCG 308
Y +++ H K D++A R R+ ++ QD +KP +++ S R G
Sbjct: 232 TYNTMIDGHVKGGDLEAG-------FRLRD-----QMLQDGRKPNVVTYNVLLSGLCRAG 279
Query: 309 LKLQIMPELLEKDSILKM--EGKQELVLFRNGKLLHSNRAM------------------- 347
++ L+++ + M +G +LF +R M
Sbjct: 280 -RMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTC 338
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGEST-LCSDVIDALIQLGFLEAAHDILDDM 406
+ L+NG K GK ++ +L + H +T + + +I+ Q+ L+ A I + M
Sbjct: 339 SILLNGLCKDGKVAKAEQVLEMLV--HTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQM 396
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ D TY +L+ K++M EAE L+ +M KS + ++ + + +
Sbjct: 397 KSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQL 456
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
FT ++ +M+++ S + S + FCK I +A+ I M
Sbjct: 457 EKCFT--------------VLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMI 502
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
+ P + + ++ + +L +++ SGV A S Y LL +
Sbjct: 503 HKDVVPNAQVYNSIIDAYIESGGTEQAFLL---VEKMKSSGVSA-SIFTYNLLLKGLCKN 558
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ E+I + Q + D + Y +
Sbjct: 559 SQIDEAEELIYNLTNQGLRPDVVSYNT 585
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 81/192 (42%), Gaps = 15/192 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LING K +E L++ ++K T + +IDA + G LE +L DM+
Sbjct: 411 LINGLCKMEMITEAEDLVMEMEKSGVDPSVETF-NTLIDAYGRAGQLEKCFTVLSDMQDK 469
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + ++ S++ A+ K EA A+L M +V N + + + E +
Sbjct: 470 GIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQA 529
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
F L+++M+ ++I+ N + CK I +A ++ +
Sbjct: 530 FL--------------LVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQG 575
Query: 530 IRPTVETFYYLV 541
+RP V ++ ++
Sbjct: 576 LRPDVVSYNTII 587
>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
Length = 573
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 108/253 (42%), Gaps = 35/253 (13%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK----VKMFREAEALLKQM 441
VI L + G L A D+ DM G TY +L+ YYK KM+ + LLK+M
Sbjct: 194 VISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMY-HVDMLLKEM 252
Query: 442 RKS----------------CLVQNLSCEMVVSERFSE--VADKSASFTD-TSSLMDKSDL 482
++ C N++ + V E + + ++T S L + +
Sbjct: 253 NQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKV 312
Query: 483 AES--LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
+S L++EM EE L+T+ LNS + FCK M+ +A M + ++P V T+ L
Sbjct: 313 EDSMKLVEEM-EELGLATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTL 371
Query: 541 VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGY 598
+ G+ L ++ T G + +S D+ Y L+ F + V ++
Sbjct: 372 IDGYQRLGKMKEATAAKGAMAGK------GISPDVKTYNCLITGFTTSTDWRSVSGLLDE 425
Query: 599 MKKQNMYVDKLMY 611
MK+ + D + Y
Sbjct: 426 MKETGVKADLVTY 438
>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 712
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 137/327 (41%), Gaps = 38/327 (11%)
Query: 333 VLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ 392
N L + M ++ + + GK E +++ ++ H ++ + + VID +
Sbjct: 147 TFLNNDNLDRATEVMQCMVRSFSEIGKLKEAVNMVIEMQ-NHGLVLKARILNFVIDVALA 205
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLS 451
LGF++ A + D+M DST+YK ++ Y ++ + + LK M + V N +
Sbjct: 206 LGFVDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNAT 265
Query: 452 CEMVVSERFSEVADKSASF---------------TDTSSLMD------KSDLAESLIQEM 490
C +++S FSE + +F + SSL++ A +++EM
Sbjct: 266 CTLMIST-FSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEM 324
Query: 491 REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM-QEMKIRPTVETFYYLVYGHSSLEM 549
+ +Y + I CK A +++ ++ + +P V T+ ++ G+ E
Sbjct: 325 VRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEK 384
Query: 550 YRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ------- 602
+L + R E G L + + Y L+ + G F R E++ M K+
Sbjct: 385 LNRAEML---LIRMKEQG-LVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIF 440
Query: 603 --NMYVDKLMYKSEFLKHHKHLYRRLK 627
N +D L K F + +K L R LK
Sbjct: 441 TYNAIIDGLCKKGRFPEAYKLLRRGLK 467
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 22/215 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+INGY K K + LL+ +K++ +T + +ID + G A++++D M
Sbjct: 375 MINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTY-TCLIDGHCKAGNFGRAYELMDLMGKE 433
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL-VQNLSCEMVVSERFSEVADKSA 468
G + TY +++ K F EA LL++ KS L ++ +++SE + +K A
Sbjct: 434 GFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQA 493
Query: 469 --------------------SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
T K + +E L +E L T S I
Sbjct: 494 LAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICG 553
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+C+ I A+K + +M++ +P T+ L+ G
Sbjct: 554 YCRDGHISSAIKFFHKMRDYGCKPDSITYGALISG 588
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 99/450 (22%), Positives = 186/450 (41%), Gaps = 68/450 (15%)
Query: 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA--HSIII--LAQIHEMNCQRD 229
+PD +N+V+ G ++E M G DA H+ II +A +++ D
Sbjct: 109 EPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMD 168
Query: 230 ELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLR 289
L+ C + ++ Y +L++ + ++ A +L+ +M P
Sbjct: 169 HLRSMGCDPNVVT----------YTALIAAFARAKKLEEAMKLLEEMRERGCP------- 211
Query: 290 QDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFR--NGKLLHSNRAM 347
PNL + ++ + L K L M G + V+ + G +
Sbjct: 212 -------------PNL---VTYNVLVDALCK---LSMVGAAQDVVKKMIEGGFAPNVMTF 252
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ-LGFLEAAHDILDDM 406
L++G+ K G N + + LL I S +ID L + FLEA ++L++M
Sbjct: 253 NSLVDGFCKRG-NVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEA-KEVLEEM 310
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ G D+ TY +L+ K EAE +L++M S + ++VV +S +
Sbjct: 311 KTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGS----GCTPDVVV---YSSIIH- 362
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+F + L++ A+ +QEMR++ + N+ I CK I +A I +MQ
Sbjct: 363 --AFCKSGKLLE----AQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQ 416
Query: 527 EM-KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNF 583
E + P V T+ ++ G +M + L + R ++G + D+ Y T++
Sbjct: 417 ESGDVLPDVVTYSTVINGLCKSDMLVEAQKL---LDRMCKAG---CNPDVVTYTTIIDGL 470
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ G E ++ MK+ + + Y +
Sbjct: 471 CKCGRLEEAEYLLQGMKRAGCAPNVVTYTT 500
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 114/287 (39%), Gaps = 39/287 (13%)
Query: 355 KKHGKNSEL--SWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHP 412
KKH + +L S LL S + + S+ + VI G L AA ++L++M+ AG
Sbjct: 91 KKHREAGDLFRSELLASCEPDVCSY------NIVISGFCNAGDLHAALELLEEMKSAGFA 144
Query: 413 MDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTD 472
D+ T+ ++TA A L+ M C+ V + +A +F
Sbjct: 145 PDAFTHTPIITAMANAGDLDGAMDHLRSM---------GCDPNVVTYTALIA----AFAR 191
Query: 473 TSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP 532
L + A L++EMRE + N + CK M+G A + ++M E P
Sbjct: 192 AKKLEE----AMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAP 247
Query: 533 TVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFER 591
V TF LV G D L G + + + V+ Y L+ + F
Sbjct: 248 NVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVT-----YSALIDGLCKSQKFLE 302
Query: 592 VMEVIGYMKKQNMYVDKLMY--------KSEFLKHHKHLYRRLKVSN 630
EV+ MK + + D Y K++ ++ + + RR+ S
Sbjct: 303 AKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSG 349
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 104/251 (41%), Gaps = 37/251 (14%)
Query: 336 RNGKLLHSNRAMAKL---------------INGYKKHGKNSELSWLLLSIKKEHHSFGES 380
++GKLL + + + ++ I+G K GK +E +L +++ +
Sbjct: 366 KSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDV 425
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
S VI+ L + L A +LD M AG D TY +++ K EAE LL+
Sbjct: 426 VTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQG 485
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS---DLAESLIQEMREEAALS 497
M+++ N+ ++T S + K+ D AE +++EMR
Sbjct: 486 MKRAGCAPNV-----------------VTYTTLISGLCKARKVDEAERVMEEMRNAGCPP 528
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR--PTVETFYYLVYGHSSLEMYRDITI 555
+ N+ + C I +A ++ +RM++ + P T+ +V S ++ ++
Sbjct: 529 NLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQ 588
Query: 556 LWGDIKRNIES 566
L +K S
Sbjct: 589 LLEQMKSTTSS 599
>gi|255552808|ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543458|gb|EEF44989.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 654
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 130/296 (43%), Gaps = 30/296 (10%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ LI + K G E + L ++++ S G+ L S++I+ +L A I ++
Sbjct: 173 STLITSFGKAGMFDESLFWLQQMEQDRVS-GDLVLYSNLIELSRKLCDYSKAISIFMRLK 231
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK-SCLVQNLSCEMVVS-----ERFS 461
+G D Y S++ + K ++FREA L+ +MR+ L +S ++S E+F
Sbjct: 232 RSGITPDLVAYNSMINVFGKARLFREARMLVHEMREVGVLPDTVSYSTLLSVYVENEKFV 291
Query: 462 EVADKSASFT---------------DTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506
E A D +D A+ L MR+ + N+ +
Sbjct: 292 EALSVFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLL 351
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMYRDITILWGDIKRNI 564
+ + ++ G+A+ ++R MQ +I V T+ + +YG SLE + ++ KR I
Sbjct: 352 KVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGK-SLEHEKATNLVQEMQKRGI 410
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
E + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 411 EPNAIT-----YSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYER 461
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 108/266 (40%), Gaps = 36/266 (13%)
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE 458
AH + D+M D TY +L+T++ K MF E+ L+QM + +S ++V+
Sbjct: 153 AHGLFDEMRQRALSPDRYTYSTLITSFGKAGMFDESLFWLQQMEQ----DRVSGDLVLYS 208
Query: 459 RFSEVADKSASFTDTSSLMDK-------SDL------------------AESLIQEMREE 493
E++ K ++ S+ + DL A L+ EMRE
Sbjct: 209 NLIELSRKLCDYSKAISIFMRLKRSGITPDLVAYNSMINVFGKARLFREARMLVHEMREV 268
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI 553
L ++ + + + + +AL ++ M E + T ++ + L+M ++
Sbjct: 269 GVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEA 328
Query: 554 T-ILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
+ W K IE V++ Y TLL + + F + + M+++ + + + Y
Sbjct: 329 DRLFWSMRKMGIEPNVVS-----YNTLLKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYN 383
Query: 613 SEFLKHHKHLYRRLKVSNARTEAQSK 638
+ + K L K +N E Q +
Sbjct: 384 TMIKIYGKSLEHE-KATNLVQEMQKR 408
>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 120/282 (42%), Gaps = 24/282 (8%)
Query: 285 NPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKM----EGKQELVLFRNGKL 340
N ++D K Y + N C LQ++ + D + K +G+ ++ +
Sbjct: 494 NHGRKEDGHKIYKDMV---NQNCSPDLQLLNTYM--DCMFKAGEPEKGRAMFEEIKSRRF 548
Query: 341 LHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAH 400
+ R+ + LI+G K G +E L S+K E ++ + VID + G + A+
Sbjct: 549 VPDARSYSILIHGLIKAGFANETYELFYSMK-EQGCVLDTRAYNIVIDGFCKCGKVNKAY 607
Query: 401 DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERF 460
+L++M+ G TY S++ K+ EA L ++ + S+R
Sbjct: 608 QLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK--------------SKRI 653
Query: 461 SEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALK 520
+S D + + D A +++E+ ++ +Y NS + K + I +AL
Sbjct: 654 ELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALV 713
Query: 521 IYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
++ M+E+K P T+ L+ G + + + W ++++
Sbjct: 714 CFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQK 755
>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Brachypodium distachyon]
Length = 556
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/231 (19%), Positives = 98/231 (42%), Gaps = 20/231 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S V+D + G ++ AH +LD++ G +++ Y SLL +Y + + LLK+M
Sbjct: 152 SVVVDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQRNDDAVAGLLKEMEN 211
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ + ++ + S D S E++ EM+ + +Y +
Sbjct: 212 RGVEPTVGTYTILVDGLSRAGDISK--------------VEAVYDEMKRKNVAGDVYFYS 257
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-R 562
+ I +C+G + A +++ + P T+ L+ G + +L D++ R
Sbjct: 258 AVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLR 317
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + ++ T++ + + G E+ +E+ M+K + +D Y +
Sbjct: 318 GVGHNQI-----VFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNT 363
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 116/274 (42%), Gaps = 29/274 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
+ R LING+ K G+ E + +LL+ + + + +ID + G +E A +I
Sbjct: 287 NERTYGALINGFCKIGQ-IEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHGMVEKALEI 345
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462
ME G +D TY +L +V +A+ LL M + + N
Sbjct: 346 KAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKGVAPNY------------ 393
Query: 463 VADKSASFTDTSSLMDK-SDLAES--LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
S+T S+ K D+ E+ L ++M + + ++ N I + K I +A
Sbjct: 394 -----VSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAE 448
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITI-LWGDIK-RNIESGVLAVSRDLYE 577
+ + M++ + P + T+ LV+GH + D+ + L+ ++K R + V+A Y
Sbjct: 449 RFKKEMEKKGLVPDIYTYAGLVHGH-CVNGKVDVALRLFEEMKHRGTKPNVVA-----YT 502
Query: 578 TLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
L+ + G E ++ M + D +Y
Sbjct: 503 ALVSGLAKEGRSEEAFQLYDDMLAAGLTPDDTLY 536
>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 124/288 (43%), Gaps = 30/288 (10%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ +ING K G N+ ++ LL +E + +ID+L + + A D+L +M
Sbjct: 201 STVINGLCKSG-NTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMV 259
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK----------SCLVQNLSCEMVVS 457
G P D TY ++L + + EA L +M + LV L E +VS
Sbjct: 260 DRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVS 319
Query: 458 ER---FSEVADKSA--------SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506
E F + K A + D L ++ D A+ ++ M ++ ++ N I
Sbjct: 320 EARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILI 379
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566
+CK + + +A + M E ++ P T+ L+ G + ++ L+ K S
Sbjct: 380 NGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLF---KEMCSS 436
Query: 567 GVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
G+L DL Y TLL + G+ + ++++ M++ + D ++Y
Sbjct: 437 GLLP---DLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYN 481
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 15/180 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+ L +L + A +L M G D+ T+ +L+ +EA L +M
Sbjct: 133 LINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEM---- 188
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
V+ V+S +S V + +TS +A L+++M E+ + +
Sbjct: 189 -VRRGHQPDVIS--YSTVINGLCKSGNTS-------MALQLLRKMEEKGCKPNLVAYTTI 238
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNI 564
I CK ++ DA+ + M + I P V T+ +++G SL + TIL+ + + RN+
Sbjct: 239 IDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNV 298
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 80/194 (41%), Gaps = 15/194 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L++G K G SE + ++ K+ T + ++D ++ A +LD M
Sbjct: 308 LVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTY-NALMDGYCLNNQMDEAQKVLDIMVDK 366
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G +Y L+ Y K + EA++LL +M + L + + + +V
Sbjct: 367 GCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVG----- 421
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
+ A +L +EM L + ++ + CK + +ALK+ + MQE K
Sbjct: 422 ---------RPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESK 472
Query: 530 IRPTVETFYYLVYG 543
I P + + L+ G
Sbjct: 473 IEPDIVLYNILIEG 486
>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 988
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+ L +LG + A++++ M L G D TY S++ A+ + R+AE + M K
Sbjct: 493 LINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKG 552
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ ++ V+ ++ + + D A+ EM+++ + N+
Sbjct: 553 IHPSVVTYTVLIHSYA--------------VRGRLDFAKKYFDEMQDKGVSPNVITYNAL 598
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
IY CK M+ A ++ M+ + P T+ L+ +S+L+ ++D L+ D+
Sbjct: 599 IYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDM 653
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 85/198 (42%), Gaps = 20/198 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ ++D+ + G + A ++LD M + G + +Y L+ F A+ L++QM
Sbjct: 211 NTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSM 270
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
L + + F K F + A L +EM AL T+ N
Sbjct: 271 LGLKVSAHTYNPLIRGFC----KKEMFEE----------ANDLRREMLGRGALPTVVTYN 316
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-R 562
+ +Y C+ + DA + M + P + ++ L+YG+S L + + +L+ +++ +
Sbjct: 317 TIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSK 376
Query: 563 NIESGVLAVSRDLYETLL 580
N+ V+ Y TL+
Sbjct: 377 NLVPSVVT-----YNTLI 389
>gi|255661194|gb|ACU25766.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 426
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 131/297 (44%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y S++ + K K+FREA +L+ +MR + ++ + L V ++RF
Sbjct: 71 KRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVENKRF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ +++ G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYER 301
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 103/247 (41%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKS------CLVQNL----------SCEMVVS 457
D TY +L+T + K +F A + L++M + L NL S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 458 ERF--SEVADKSASFTDTSSLMDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
R S A ++ ++ K+ L A SLI EMR + + + +
Sbjct: 68 SRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|110740599|dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
Length = 546
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 133/297 (44%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G +S LSWL ++ G+ L S++I+ +L A I +
Sbjct: 62 STLITSFGKEGMFDSALSWL--QKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRL 119
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVS-------- 457
+ +G D Y S++ Y K K+FREA L+K+M ++ ++ N +S ++S
Sbjct: 120 KRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKF 179
Query: 458 ----ERFSEVADKSASF--------TDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
F+E+ + + + D +D A+ L +R+ + N+
Sbjct: 180 LEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTI 239
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMYRDITILWGDIKRN 563
+ + + ++ G+A+ ++R MQ I V T+ + +YG ++E + ++ R
Sbjct: 240 LRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYG-KTMEHEKATNLVQEMQSRG 298
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 299 IEPNAIT-----YSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYER 350
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 58/302 (19%), Positives = 124/302 (41%), Gaps = 40/302 (13%)
Query: 363 LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422
L W+ K F + + +V+ A + AH + D+M D TY +L+
Sbjct: 10 LDWVHEEAKYTPSVFAYNVVLRNVLRA----KQFDIAHGLFDEMRQRALAPDRYTYSTLI 65
Query: 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDK--- 479
T++ K MF A + L++M + +S ++V+ E++ + ++ S+ +
Sbjct: 66 TSFGKEGMFDSALSWLQKMEQD----RVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKR 121
Query: 480 ----SDL------------------AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGD 517
DL A LI+EM E L ++ + + + +
Sbjct: 122 SGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLE 181
Query: 518 ALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDIT-ILWGDIKRNIESGVLAVSRDLY 576
AL ++ M+E+ + T ++ + L+M ++ + W K +IE V++ Y
Sbjct: 182 ALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVS-----Y 236
Query: 577 ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQ 636
T+L + + F + + M+++++ + + Y + +K + K +N E Q
Sbjct: 237 NTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNT-MIKIYGKTMEHEKATNLVQEMQ 295
Query: 637 SK 638
S+
Sbjct: 296 SR 297
>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g31400, chloroplastic; Flags: Precursor
gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
Length = 918
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 98/215 (45%), Gaps = 10/215 (4%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+ GY K GK E+ + +K+EH S +ID + G + A +I + + A
Sbjct: 485 LLGGYGKQGKYDEVKKVFTEMKREH-VLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSA 543
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA--DKS 467
G D Y +L+ A K + A +L+ +M K + N+ + + F A D+S
Sbjct: 544 GLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRS 603
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL----NSSIYFFCKGKM--IGDALKI 521
A +++ SL S A S + E + +L N+ C+ M + L++
Sbjct: 604 ADYSNGGSLPFSSS-ALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEV 662
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
+R+M +++I+P V TF ++ S + D ++L
Sbjct: 663 FRKMHQLEIKPNVVTFSAILNACSRCNSFEDASML 697
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 109/268 (40%), Gaps = 26/268 (9%)
Query: 368 LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK 427
++K+E + L S +I L + G + A I + G+ + +L++AY +
Sbjct: 221 FAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGR 280
Query: 428 VKMFREAEALLKQMRKSCLVQNLSCEMVVSE-------RFSEVA------------DKSA 468
+ EA ++ M++ L NL V + F +VA
Sbjct: 281 SGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRI 340
Query: 469 SFTDTSSLMDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+F ++ + L A +L EM ++ N+ + CKG + A +I +M
Sbjct: 341 TFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQM 400
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ 585
+I P V ++ ++ G + + + L+G+++ +A+ R Y TLL + +
Sbjct: 401 PVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL----GIALDRVSYNTLLSIYTK 456
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G E ++++ M + D + Y +
Sbjct: 457 VGRSEEALDILREMASVGIKKDVVTYNA 484
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 96/231 (41%), Gaps = 24/231 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++DA+ + G ++ A +IL M + + +Y +++ + K F EA L +MR
Sbjct: 380 LLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMR--- 436
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST---IYKL 502
+ +A S+ S+ K +E + +RE A++ +
Sbjct: 437 --------------YLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTY 482
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
N+ + + K + K++ M+ + P + T+ L+ G+S +Y++ +I R
Sbjct: 483 NALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAM----EIFR 538
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+S L LY L+ + G + +I M K+ + + + Y S
Sbjct: 539 EFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNS 589
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 88/204 (43%), Gaps = 23/204 (11%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILD 404
+ +I+G+ K G+ E L++ E G + + ++ ++G E A DIL
Sbjct: 413 STVIDGFAKAGRFDEA----LNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILR 468
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
+M G D TY +LL Y K + E + + +M++ ++ NL + + +S
Sbjct: 469 EMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYS--- 525
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
K + + A + +E + + + ++ I CK ++G A+ +
Sbjct: 526 -KGGLYKE----------AMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDE 574
Query: 525 MQEMKIRPTVETFYYLV--YGHSS 546
M + I P V T+ ++ +G S+
Sbjct: 575 MTKEGISPNVVTYNSIIDAFGRSA 598
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 89/480 (18%), Positives = 190/480 (39%), Gaps = 64/480 (13%)
Query: 176 DTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFK 235
+T+ +N++LH + G + ++ M G V D S ++ + CQ ++L K
Sbjct: 251 NTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGY---CQVEQLGKVL 307
Query: 236 CYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKP 295
+++L Q Y S++S K + A E +L + + + P+ +
Sbjct: 308 KLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEA-EQVLRVMKNQRIFPD-----NVVYT 361
Query: 296 YLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELV--LFRNGKLLHSNRAMAK---- 349
LIS + ++ ++ E+ K + ++ L + GK++ + + ++
Sbjct: 362 TLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSK 421
Query: 350 -----------LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDV------IDALIQ 392
LI+GY K G+ E L H+ E L +V +D L +
Sbjct: 422 GLKPDEVTYTALIDGYCKAGEMKEAFSL-------HNQMVEKGLTPNVVTYTALVDGLCK 474
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
G ++ A+++L +M G + TY +L+ KV +A L+++M + +
Sbjct: 475 CGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTIT 534
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKS---------------------DLAESLIQEMR 491
+ + + ++ + + + ++DK + E LI+ M
Sbjct: 535 YTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWML 594
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYR 551
++ + NS + +C + ++IY+ M + P T+ L+ GH R
Sbjct: 595 DKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKA---R 651
Query: 552 DITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
++ W K +E G +++ Y +L+ F + FE ++ M+ +K +Y
Sbjct: 652 NMKEAWFLHKEMVEKG-FSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIY 710
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 114/289 (39%), Gaps = 21/289 (7%)
Query: 326 MEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD 385
+E +Q L + +N ++ N LI+G+ K G N + + L K + +
Sbjct: 339 VEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSG-NVSVEYKLFDEMKRKKIVPDFVTYTS 397
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I L Q G + A + +M G D TY +L+ Y K +EA +L QM +
Sbjct: 398 MIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKG 457
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L N VV+ + D + D+A L+ EM E+ + N+
Sbjct: 458 LTPN-----VVT---------YTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNAL 503
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL-EMYRDITILWGDIKRNI 564
I CK I A+K+ M P T+ ++ + + EM + +L + + +
Sbjct: 504 INGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGL 563
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ ++ + L+ F G E +I +M + + + + S
Sbjct: 564 QPTIVT-----FNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNS 607
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 111/264 (42%), Gaps = 19/264 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
LI+G KHG+ + LL ++K+ + + +++ + + G +E A ++ +ME
Sbjct: 472 GALIDGLCKHGELDTANELLDEMRKKGLQLN-VCIYNSMVNGICKAGNIEQAIKLMKEME 530
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
+AG D+ TY +++ AY ++ +A LL++M L + V+ F +
Sbjct: 531 VAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLG--- 587
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+++ D L+ M E+ + N+ + C + KIY+RM+
Sbjct: 588 --------MLEDGD---RLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRN 636
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
+ P T+ L+ GH R++ W K IE G + Y L+ F +
Sbjct: 637 QGVAPDSNTYNILIKGHCKA---RNLKEAWFLYKEMIEKGYVPTVTS-YNALIKRFYKKR 692
Query: 588 YFERVMEVIGYMKKQNMYVDKLMY 611
F E+ M+ + D +Y
Sbjct: 693 KFXEARELFEEMRGHGLVADGEIY 716
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/254 (19%), Positives = 105/254 (41%), Gaps = 31/254 (12%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S VID LG L+ A ++DDM++ G + TY S++ K+ EAE +L++M
Sbjct: 297 STVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMS 356
Query: 444 SCLVQN-------------LSCEMVVSERFSEVADK--SASFTDTSSLMD------KSDL 482
++ + L ++ F E+ K S + ++L+ K
Sbjct: 357 QKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIE 416
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
++L EM + I +CK + +A ++ M +M + P + T+ L+
Sbjct: 417 PQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALID 476
Query: 543 G---HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
G H L+ ++ + L ++ +Y +++ + G E+ ++++ M
Sbjct: 477 GLCKHGELDTANELL-------DEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM 529
Query: 600 KKQNMYVDKLMYKS 613
+ + D + Y +
Sbjct: 530 EVAGIDPDAITYTT 543
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 50/267 (18%), Positives = 105/267 (39%), Gaps = 36/267 (13%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
++ + + +I +LG + A+ D+M D TY +L+ + + E + L
Sbjct: 362 DNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLF 421
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS------------------ 480
+M + + L + V +V K+ + SL ++
Sbjct: 422 HEM----ISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDG 477
Query: 481 -------DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT 533
D A L+ EMR++ + NS + CK I A+K+ + M+ I P
Sbjct: 478 LCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPD 537
Query: 534 VETFYYLVYGHSSL-EMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
T+ ++ + L ++ + +L + R ++ V+ + L+ F G E
Sbjct: 538 AITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVT-----FNVLMNGFCMLGMLEDG 592
Query: 593 MEVIGYMKKQNMYVDKLMYKSEFLKHH 619
++G+M ++ + D + Y + +K H
Sbjct: 593 DRLLGWMLEKGIVPDAITYNT-LMKQH 618
>gi|15242530|ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39980, chloroplastic; Flags: Precursor
gi|10176990|dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana]
gi|332007115|gb|AED94498.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 678
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 133/297 (44%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G +S LSWL ++ G+ L S++I+ +L A I +
Sbjct: 194 STLITSFGKEGMFDSALSWL--QKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRL 251
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVS-------- 457
+ +G D Y S++ Y K K+FREA L+K+M ++ ++ N +S ++S
Sbjct: 252 KRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKF 311
Query: 458 ----ERFSEVADKSASF--------TDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
F+E+ + + + D +D A+ L +R+ + N+
Sbjct: 312 LEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTI 371
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMYRDITILWGDIKRN 563
+ + + ++ G+A+ ++R MQ I V T+ + +YG ++E + ++ R
Sbjct: 372 LRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYG-KTMEHEKATNLVQEMQSRG 430
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 431 IEPNAIT-----YSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYER 482
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 58/302 (19%), Positives = 124/302 (41%), Gaps = 40/302 (13%)
Query: 363 LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422
L W+ K F + + +V+ A + AH + D+M D TY +L+
Sbjct: 142 LDWVHEEAKYTPSVFAYNVVLRNVLRA----KQFDIAHGLFDEMRQRALAPDRYTYSTLI 197
Query: 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDK--- 479
T++ K MF A + L++M + +S ++V+ E++ + ++ S+ +
Sbjct: 198 TSFGKEGMFDSALSWLQKMEQD----RVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKR 253
Query: 480 ----SDL------------------AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGD 517
DL A LI+EM E L ++ + + + +
Sbjct: 254 SGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLE 313
Query: 518 ALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDIT-ILWGDIKRNIESGVLAVSRDLY 576
AL ++ M+E+ + T ++ + L+M ++ + W K +IE V++ Y
Sbjct: 314 ALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVS-----Y 368
Query: 577 ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQ 636
T+L + + F + + M+++++ + + Y + +K + K +N E Q
Sbjct: 369 NTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNT-MIKIYGKTMEHEKATNLVQEMQ 427
Query: 637 SK 638
S+
Sbjct: 428 SR 429
>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 18/228 (7%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ L + G ++ A ++ DME+AG D+ TY +L+ AY K + A LL+QM
Sbjct: 402 NSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQM-- 459
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
L + L +V F+ + + F + L D E L++ M E+ + N
Sbjct: 460 --LDRELQPTVVT---FNVLMN---GFCMSGMLED----GEKLLKWMLEKGIMPNATTYN 507
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
S I +C + +IYR M + P T+ L+ GH R++ W + R+
Sbjct: 508 SLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKA---RNMKEAWF-LHRD 563
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ ++ Y L+ F + F E+ M+++ + D+ +Y
Sbjct: 564 MVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIY 611
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 116/298 (38%), Gaps = 36/298 (12%)
Query: 332 LVLFRNGKLLHSNRAM---------------AKLINGYKKHGKNSELSWLLLSIKKEHHS 376
L+L + GK+ + R + LI+G+ K G S L ++K S
Sbjct: 231 LLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKIS 290
Query: 377 FGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEA 436
T + VI L Q G + A + +M D TY +L+ Y K +EA +
Sbjct: 291 PDFITYTA-VICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFS 349
Query: 437 LLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAAL 496
L QM + L N+ +++ + + D A L+ EM +
Sbjct: 350 LHNQMLQMGLTPNIVTYTALADGLCKCGE--------------VDTANELLHEMCRKGLE 395
Query: 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH-SSLEMYRDITI 555
IY NS + CK I A+K+ + M+ P T+ L+ + S EM R +
Sbjct: 396 LNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHEL 455
Query: 556 LWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
L + R ++ V+ + L+ F G E +++ +M ++ + + Y S
Sbjct: 456 LRQMLDRELQPTVVT-----FNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNS 508
>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 727
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 129/288 (44%), Gaps = 38/288 (13%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+I+G+ K G + +++ +S K +T + ++ L+QLG ++ A ++D+MELA
Sbjct: 412 IIDGFMKTG-DVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELA 470
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQ----------------MRKSCLVQNLSCE 453
G + +Y +L+ + + A LK+ ++ C +
Sbjct: 471 GVQPNFRSYTTLMQGFASIGEIGLAFKCLKRVNEITQKPPIISYASLLKACCKAGRMQNA 530
Query: 454 MVVSER--FSEVADKSASFTDTSSLMD----KSDLAES--LIQEMREEAALSTIYKLNSS 505
+ V+E F+ V + F ++L+D + D+ E+ ++Q+MR+E I+ S
Sbjct: 531 IAVTEEMAFAGVPMNNYIF---NTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSF 587
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
+ CK + A + M++ ++P ++T+ L++G +S+ I + ++K
Sbjct: 588 VNACCKAGDMQKATETIEEMKQQDLQPNLQTYTILIHGWTSVSHPEKALICYDEMK---- 643
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFER------VMEVIGYMKKQNMYVD 607
+ L + LY ++ + L R V++V M Q M +D
Sbjct: 644 AAGLIPDKPLYYCIVTSLLSKAAIARETVRNGVLQVTSEMVDQGMCID 691
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 83/213 (38%), Gaps = 22/213 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LIN Y K GK + +K + + +T S ++D +QLG A + +DM A
Sbjct: 307 LINLYTKLGKMMKALEFCKEMKAQGITLNRNTY-SMLVDGYVQLGDFANAFSVFEDMSEA 365
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D TY LL A+ K + A LL +M+ + + + + F + D +
Sbjct: 366 GIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYITIIDGFMKTGDVRMA 425
Query: 470 FTDTSSL---------------------MDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
+ S + + + D A S+I EM + +
Sbjct: 426 YKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQG 485
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
F IG A K +R+ E+ +P + ++ L+
Sbjct: 486 FASIGEIGLAFKCLKRVNEITQKPPIISYASLL 518
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 78/192 (40%), Gaps = 30/192 (15%)
Query: 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTS 474
+ TY L+ Y K+ +A K+M+ + N + ++ + + ++ D + +F
Sbjct: 301 AVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFANAF---- 356
Query: 475 SLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
S+ ++M E N + FCK + + A+++ RM+ PT+
Sbjct: 357 ----------SVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTI 406
Query: 535 ETFYYLVYGHSSLEMYRDITILWGDIK---RNIESGVLAVSR---DLYETLLLNFLQGGY 588
+T+ ++ G GD++ + + LA R Y ++ N +Q G
Sbjct: 407 QTYITIIDGFMKT----------GDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQ 456
Query: 589 FERVMEVIGYMK 600
+R VI M+
Sbjct: 457 IDRAASVIDEME 468
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 36/243 (14%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDV-----IDALIQLGFLEAAHDILD 404
LING K+ K E ++ H F E + + V + A + ++ A ++D
Sbjct: 488 LINGLCKNHKMEE------ALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVD 541
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSE--RFS 461
+M G P+D+ TY L+ A K + L ++M K +SC +++S R
Sbjct: 542 EMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTG 601
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
+V D A +Q+M I NS I CK + +A +
Sbjct: 602 KVND-----------------ALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNL 644
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLL 581
+ ++Q IRP T+ L+ H M+ D +L + + ++SG + ++ ++L+
Sbjct: 645 FNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLL---LYKGVDSGF--IPNEVTWSILI 699
Query: 582 NFL 584
N++
Sbjct: 700 NYI 702
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 92/242 (38%), Gaps = 28/242 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-- 441
+DVI L + G + A +LD M L G D+ TY L+ ++ EA ALL ++
Sbjct: 279 NDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN 338
Query: 442 RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYK 501
+ L L V S RF E D L +++ E A Y
Sbjct: 339 PNTVLYNTLISGYVASGRFEEAKDL---------------LYNNMVIAGYEPDA----YT 379
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
N I K + AL++ M + P V T+ L+ G + +I
Sbjct: 380 FNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAA----EIV 435
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS---EFLKH 618
++ + L+++ Y L+ + G E +++ G M + D + S K+
Sbjct: 436 NSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKN 495
Query: 619 HK 620
HK
Sbjct: 496 HK 497
>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
Length = 792
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 23/231 (9%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G ++ A + +M G P + TY +L+ Y K K F A ALL +MR++ +SC
Sbjct: 444 GRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQN----GVSC- 498
Query: 454 MVVSERFSEVADKSAS-FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
D + + + ++++ + +++ E + T NS I F K
Sbjct: 499 ----------GDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKA 548
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN-IESGVLAV 571
M+G A +YR+M++ I P + T+ + G+ L ++R+ I+ + A
Sbjct: 549 GMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAA- 607
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHL 622
Y + F + G R + + + K + D +Y S F+ +K+L
Sbjct: 608 ----YNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNS-FVTGYKNL 653
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 113/280 (40%), Gaps = 22/280 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+NG K GK + + LLL + E + +ID + G ++ H +L+ M+
Sbjct: 378 LVNGLCKLGKVDD-ARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEV 436
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALL----KQMRKSCLVQNLSCEMVVSERFSEVAD 465
D TY +L+ Y K ++A A+L + S +++ L C E EV D
Sbjct: 437 SCTPDVVTYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLEGL-CSTGKVEEAQEVMD 495
Query: 466 --KSASFTDTSS--------LMD--KSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
TSS L D + D A ++Q M E +Y + I CK K
Sbjct: 496 LMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTK 555
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR 573
+ DA+ + M E P V T+ L+ G + + + K +SG +
Sbjct: 556 RVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKI---NKMDAAYQCFKTMRDSGC-EPDK 611
Query: 574 DLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y L+ F Q G E+ +EV+ M ++ D Y S
Sbjct: 612 LAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFS 651
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 86/431 (19%), Positives = 166/431 (38%), Gaps = 56/431 (12%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
PD ++N ++ + G ++++++M + V D +I + CQ + L +
Sbjct: 125 PDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPD---VITYTSLIVGCCQTNALDEA 181
Query: 235 KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDM-NRYREPLPNPKLRQDAQ 293
+ ++++ Y +LL+ K + ++ +L+ +M REP +
Sbjct: 182 RKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREP---DTFSYNTV 238
Query: 294 KPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLING 353
L G K + ++LEK +++ + ++V + + L++G
Sbjct: 239 VACLCESG--------KYEEAGKILEK--MIEKKCGPDVVTYNS------------LMDG 276
Query: 354 YKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413
+ K K E LL + + T + +I + L A+ +++DM AG
Sbjct: 277 FCKVSKMDEAERLLEDMVGRRCAPTVITY-TTLIGGFSRADRLADAYRVMEDMFKAGISP 335
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTD 472
D TY LL K EA LL+ M K C ++ ++V+
Sbjct: 336 DLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCK----------- 384
Query: 473 TSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP 532
+ K D A L++ M E + N+ I FCK + + K+ M+E+ P
Sbjct: 385 ----LGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTP 440
Query: 533 TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
V T+ L+ G+ +D + G ++ + Y ++L G E
Sbjct: 441 DVVTYSTLIDGYCKANRMQDAFAILG----------ISPDKASYSSMLEGLCSTGKVEEA 490
Query: 593 MEVIGYMKKQN 603
EV+ M KQ
Sbjct: 491 QEVMDLMTKQG 501
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 137/328 (41%), Gaps = 40/328 (12%)
Query: 315 PELLEKDSILKM-----EGKQELVLFRNGKLLHSNRAMAK--LINGYKKHGKNSELSWLL 367
P+++ ++ILK + + L FR GK+ S A LI+G + + E LL
Sbjct: 57 PDVITHNTILKAYCQIGDLDRALSHFR-GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLL 115
Query: 368 LS-IKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
I+K+ H C +I L ++G ++AA ++L M D TY SL+
Sbjct: 116 DEMIQKDCHPDAAVYNC--LIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCC 173
Query: 427 KVKMFREAEALLKQMRKSCLVQ---------NLSCEMVVSERFS-------EVADKSASF 470
+ EA L+++M++S L N C+ E S E + +F
Sbjct: 174 QTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTF 233
Query: 471 TDTSSLM-----DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+ + + K + A ++++M E+ + NS + FCK + +A ++ M
Sbjct: 234 SYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDM 293
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNF 583
+ PTV T+ L+ G S + D + D+ + +S DL Y LL
Sbjct: 294 VGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFK------AGISPDLVTYNCLLDGL 347
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ G E E++ M +++ D + Y
Sbjct: 348 CKAGKLEEAHELLEVMVEKDCAPDVVTY 375
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 28/236 (11%)
Query: 327 EGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDV 386
EG + L L + + LI+GY K + + ++ +L I + S+ S +
Sbjct: 425 EGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQD-AFAILGISPDKASY------SSM 477
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSC 445
++ L G +E A +++D M G P S+ Y ++ V+ EA +L+ M + C
Sbjct: 478 LEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGC 537
Query: 446 --------LVQNLSCEMVVSERFSEVAD---------KSASFT---DTSSLMDKSDLAES 485
++ N C+ E V D A++T D ++K D A
Sbjct: 538 EPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQ 597
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+ MR+ N I FC+ + A+++ + M E P T++ L+
Sbjct: 598 CFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLM 653
>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 794
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 110/240 (45%), Gaps = 29/240 (12%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-----RKSCLVQN-- 449
E A D+ +++++AG D+ TY +LL Y K + +EA +LKQM R S + N
Sbjct: 267 EEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSL 326
Query: 450 ---------LSCEMVVSERFSEVADKSASFTDTSSL-----MDKSDLAESLIQEMREEAA 495
L +V+ + + K +T T+ L K +LA + +EMR+
Sbjct: 327 VSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGC 386
Query: 496 LSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMYRDI 553
I N+ I + + +K+++ ++ K P + T+ L V+G + ++ ++
Sbjct: 387 KPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMD--SEV 444
Query: 554 TILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ ++ ++KR+ A RD + TL+ + + G F++ M M + + D Y +
Sbjct: 445 SGVFEEMKRS----RFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNA 500
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 107/262 (40%), Gaps = 36/262 (13%)
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
+ + + S ++ + ++ L + G + A +L ++E G +D Y SL+TAY
Sbjct: 131 FIRTRNDRVSLLNGSVIAVIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYA 190
Query: 427 KVKMFREAEALLKQMRK-SC--------------------------LVQNLSCEMVVSER 459
K +R+A + +M++ C LVQ++ C + +
Sbjct: 191 NNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDL 250
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
+ + S SL ++ A L +E++ N+ + + K + +A+
Sbjct: 251 CT--YNTLISCCRAGSLYEE---ALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAM 305
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETL 579
++ ++M+ RP+V T+ LV + + D +L KR + + Y TL
Sbjct: 306 EVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVL----KRKMVDKGIKPDVYTYTTL 361
Query: 580 LLNFLQGGYFERVMEVIGYMKK 601
L F+ G E MEV M+K
Sbjct: 362 LSGFVNAGKEELAMEVFEEMRK 383
Score = 42.4 bits (98), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 106/252 (42%), Gaps = 31/252 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR--- 442
V+ L + G E + +L +M+ G + TY SLL AY + AL +++
Sbjct: 501 VLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGT 560
Query: 443 --------KSCLVQNLSCEMVV-SER-FSEVADKSASFTDTS-----SLMDKSDL---AE 484
K+ ++ N +++V +ER F E + S T+ S+ + + A
Sbjct: 561 IKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKAN 620
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
++ M E ++ NS +Y + + + + +I+R + + I P V ++ ++Y +
Sbjct: 621 EILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAY 680
Query: 545 SSLEMYRDITILWGDIKRNIES-GVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKK 601
+M + KR IE V A D+ Y T + + F ++VI YM K
Sbjct: 681 CRNDM-------MDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIK 733
Query: 602 QNMYVDKLMYKS 613
Q + Y S
Sbjct: 734 QGCKPNHNTYNS 745
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 98/246 (39%), Gaps = 27/246 (10%)
Query: 373 EHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMF 431
E +SF S + + ++ A ++ G LE A + M G D TY +LL+ +
Sbjct: 312 ESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKE 371
Query: 432 REAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE--SLIQE 489
A + ++MRK N+ + + + D+ E + +E
Sbjct: 372 ELAMEVFEEMRKVGCKPNICTFNALIKMYG----------------DRGKFEEMVKVFKE 415
Query: 490 MREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEM 549
++ I N+ + F + M + ++ M+ + P +TF L+ +
Sbjct: 416 IKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGS 475
Query: 550 YRDITILWGDIKRNIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
+ + KR +E+G VS DL Y +L +GG +E+ +V+ MK +
Sbjct: 476 FDQAMAAY---KRMLEAG---VSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPN 529
Query: 608 KLMYKS 613
++ Y S
Sbjct: 530 EVTYSS 535
>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
Length = 792
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 23/231 (9%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G ++ A + +M G P + TY +L+ Y K K F A ALL +MR++ +SC
Sbjct: 444 GRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQN----GVSC- 498
Query: 454 MVVSERFSEVADKSAS-FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
D + + + ++++ + +++ E + T NS I F K
Sbjct: 499 ----------GDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKA 548
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN-IESGVLAV 571
M+G A +YR+M++ I P + T+ + G+ L ++R+ I+ + A
Sbjct: 549 GMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAA- 607
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHL 622
Y + F + G R + + + K + D +Y S F+ +K+L
Sbjct: 608 ----YNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNS-FVTGYKNL 653
>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Brachypodium distachyon]
Length = 810
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 106/243 (43%), Gaps = 33/243 (13%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G ++ A + +M + G + TY +L+ Y K F A ALL +M+++ +SC
Sbjct: 450 GCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQN----GVSCN 505
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
+ ++D+ + +++ E + T+ NS I F K
Sbjct: 506 DYTYN----------VLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAG 555
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHS-------SLEMYRDITILWGDIKRNIES 566
M+G A +Y++M+E + P + T+ + G+ +L+M D+ +R ++
Sbjct: 556 MMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVR------RRGLQP 609
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRL 626
++A Y L+ F Q G ++++ + K + + ++Y S + +K+L
Sbjct: 610 DIVA-----YNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNS-LITGYKNLNMMK 663
Query: 627 KVS 629
+VS
Sbjct: 664 EVS 666
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 46/248 (18%), Positives = 106/248 (42%), Gaps = 26/248 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++D L++ G +E A + D+M AG MD +L+ Y + A L K+ K
Sbjct: 268 MVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLKDG 327
Query: 446 LVQN--------LSCEMV-VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR----- 491
+V C+ V ++++ E+ + S + S + + L+ + R
Sbjct: 328 IVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAV 387
Query: 492 ------EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
++ L ++ N+ I++ C+ + +AL ++ RM++ ++P++ T+ L+ G+
Sbjct: 388 CLFEEMADSGLPDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYC 447
Query: 546 SLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
+ L+ ++ + V+ Y TL+ ++ F+ ++ MK+ +
Sbjct: 448 KKGCMDEAVKLYSEMPMEGFKPNVVT-----YITLMRGYIAKKDFDNAYALLDEMKQNGV 502
Query: 605 YVDKLMYK 612
+ Y
Sbjct: 503 SCNDYTYN 510
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 82/195 (42%), Gaps = 15/195 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
I+GY + G S+++ +L+ + + + +I+ Q G + A +L +
Sbjct: 582 FIDGYCRTG-CSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKD 640
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G ++ Y SL+T Y + M +E + M K +V + S + + FS+ D + +
Sbjct: 641 GLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSK--DGNVA 698
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
F A L EM + + + + + C+ I A K+ M+ +
Sbjct: 699 F------------ALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLD 746
Query: 530 IRPTVETFYYLVYGH 544
+RP V + L+ G+
Sbjct: 747 VRPNVFIYNMLINGY 761
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 23/266 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCS--DVIDALIQLGFLEAAHDILDDME 407
LI+ Y K G+ E LL S+ + + L S +I+ L + G ++ A +IL++M
Sbjct: 51 LIDAYCKMGRIDEAFGLLKSMSSKGM---QPNLISYNVIINGLCREGSMKEAWEILEEMG 107
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY +LL Y K F +A + +M V+N VV+ ++ + +
Sbjct: 108 YKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM-----VRNGVSPSVVT--YTALINSM 160
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ + M+ +MR + I F + ++ +A +I M E
Sbjct: 161 CKARNLNRAME-------FFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTE 213
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
P+V T+ ++GH LE + G ++ +E G LA Y T++ F + G
Sbjct: 214 SGFSPSVVTYNAFIHGHCVLERMEEA---LGVVQEMVEKG-LAPDVVSYSTIISGFCRKG 269
Query: 588 YFERVMEVIGYMKKQNMYVDKLMYKS 613
+R ++ M ++ + D + Y S
Sbjct: 270 ELDRAFQMKQEMVEKGVSPDAVTYSS 295
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 84/195 (43%), Gaps = 17/195 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMEL 408
L+NGY K G + L++ + + S + + +I+++ + L A + D M +
Sbjct: 121 LLNGYCKEGNFHQA--LVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRI 178
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G + TY +L+ + + + EA +L +M +S FS
Sbjct: 179 RGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTES--------------GFSPSVVTYN 224
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+F ++++ + A ++QEM E+ + ++ I FC+ + A ++ + M E
Sbjct: 225 AFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEK 284
Query: 529 KIRPTVETFYYLVYG 543
+ P T+ L+ G
Sbjct: 285 GVSPDAVTYSSLIQG 299
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 18/228 (7%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ L + G ++ A ++ DME+AG D+ TY +L+ AY K + A LL+QM
Sbjct: 502 NSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQM-- 559
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
L + L +V F+ + + F + L D E L++ M E+ + N
Sbjct: 560 --LDRELQPTVVT---FNVLMN---GFCMSGMLED----GEKLLKWMLEKGIMPNATTYN 607
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
S I +C + +IYR M + P T+ L+ GH R++ W + R+
Sbjct: 608 SLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKA---RNMKEAWF-LHRD 663
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ ++ Y L+ F + F E+ M+++ + D+ +Y
Sbjct: 664 MVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIY 711
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 116/298 (38%), Gaps = 36/298 (12%)
Query: 332 LVLFRNGKLLHSNRAM---------------AKLINGYKKHGKNSELSWLLLSIKKEHHS 376
L+L + GK+ + R + LI+G+ K G S L ++K S
Sbjct: 331 LLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKIS 390
Query: 377 FGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEA 436
T + VI L Q G + A + +M D TY +L+ Y K +EA +
Sbjct: 391 PDFITYTA-VICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFS 449
Query: 437 LLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAAL 496
L QM + L N+ +++ + + D A L+ EM +
Sbjct: 450 LHNQMLQMGLTPNIVTYTALADGLCKCGE--------------VDTANELLHEMCRKGLE 495
Query: 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH-SSLEMYRDITI 555
IY NS + CK I A+K+ + M+ P T+ L+ + S EM R +
Sbjct: 496 LNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHEL 555
Query: 556 LWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
L + R ++ V+ + L+ F G E +++ +M ++ + + Y S
Sbjct: 556 LRQMLDRELQPTVVT-----FNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNS 608
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 20/161 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ +L QLG + AH +L MEL G D +Y +++ Y +V + L+++M+
Sbjct: 259 ITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKG 318
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL---AESLIQEMREEAALSTIYKL 502
L N ++ L+ K+ AE +++EM E
Sbjct: 319 LKPN-----------------PYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIY 361
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ I FCK + A +++ MQ+ KI P T+ ++ G
Sbjct: 362 TTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICG 402
>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 779
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 107/253 (42%), Gaps = 22/253 (8%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF-LEAAHDILD 404
+ LIN Y ++G++ LL +K+E + T + VI+A + G E +
Sbjct: 111 SFTALINAYGRNGQHEASLHLLARMKREKVTPNLITY-NTVINACAKGGLEWEGLLGLFA 169
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
M G D TY +LL+A + EA + + M ++ +V + +
Sbjct: 170 QMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPD--------------S 215
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
+ D D+ + L++EM + + N I + + A K++++
Sbjct: 216 ITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQ 275
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNF 583
MQE P V TF L+ + Y ++ +L+ D+K R E V + Y TL+ F
Sbjct: 276 MQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDV-----NTYNTLIQVF 330
Query: 584 LQGGYFERVMEVI 596
QGG+F+ + +
Sbjct: 331 GQGGFFQESINLF 343
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 69/164 (42%), Gaps = 14/164 (8%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
+S + ++D Q E ++L +ME AG+ D Y L+ AY + +R A +
Sbjct: 214 DSITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMF 273
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST 498
KQM+++ + ++V E K + D L +M+E
Sbjct: 274 KQMQEA----GCTPDVVTFSTLLEAYGKHGCY----------DEVRLLFTDMKERGTEPD 319
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
+ N+ I F +G +++ ++ + + + P + T+ L+Y
Sbjct: 320 VNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLY 363
>gi|255661192|gb|ACU25765.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 426
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 135/308 (43%), Gaps = 33/308 (10%)
Query: 338 GKLLHSNR-AMAKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF 395
G+ L +R + LI + K G ++ LSWL ++ G+ L S++I+ +L
Sbjct: 2 GRALSPDRYTYSTLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCD 59
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------ 449
A I ++ +G D Y S++ + K K+FREA +L+ +MR + ++ +
Sbjct: 60 YSKAISIFSRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTT 119
Query: 450 LSCEMVVSERFSEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEA 494
L V ++RF E A + L+D + A+ L MR+
Sbjct: 120 LLTMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIG 179
Query: 495 ALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRD 552
+ N+ + + ++ G+A+ ++R MQ I V T+ ++YG +LE +
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKA 238
Query: 553 ITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
++ R IE + Y T++ + + G +R + ++ + +D+++Y+
Sbjct: 239 NNLIQEMQNRGIEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQ 293
Query: 613 SEFLKHHK 620
+ + + +
Sbjct: 294 TMIVAYER 301
>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 917
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 99/218 (45%), Gaps = 16/218 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+ GY K GK E+ + +K+EH S +ID + G + A ++ + + A
Sbjct: 485 LLGGYGKQGKYDEVKKVFAEMKREH-VLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSA 543
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA--DKS 467
G D Y +L+ A K + A +L+ +M K + N+ + + F A ++S
Sbjct: 544 GLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERS 603
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIY-------KLNSSIYFFCKGKM--IGDA 518
A +++ SL + S + E+ E I + N+ + CK M +
Sbjct: 604 ADYSNGGSL----PFSSSALSELTETEGNRVIQLFGQLTSEGNNRMTKDCKEGMQELSCI 659
Query: 519 LKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
L+++R+M +++I+P V TF ++ S + D ++L
Sbjct: 660 LEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASML 697
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 110/269 (40%), Gaps = 28/269 (10%)
Query: 368 LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK 427
++K+E + L S +I L + G + A I + G+ + +L++AY +
Sbjct: 221 FAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGR 280
Query: 428 VKMFREAEALLKQMRKSCLVQNLSCEMVVSE-------RFSEVA------------DKSA 468
+ EA ++ M++ L NL V + F +VA
Sbjct: 281 SGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRI 340
Query: 469 SFTDTSSLMDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+F ++ + L A +L EM ++ N+ + CKG + A +I +M
Sbjct: 341 TFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQM 400
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFL 584
+I P V ++ ++ G + + + L+G+++ NI A+ R Y TLL +
Sbjct: 401 PAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNI-----ALDRVSYNTLLSIYT 455
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ G E ++++ M + D + Y +
Sbjct: 456 KVGRSEEALDILREMASVGIKKDVVTYNA 484
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 89/209 (42%), Gaps = 33/209 (15%)
Query: 348 AKLINGYKKHGKNSELSWLL-----LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
+ +I+G+ K G+ E L L+I + S+ + ++ ++G E A DI
Sbjct: 413 STVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSY------NTLLSIYTKVGRSEEALDI 466
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462
L +M G D TY +LL Y K + E + + +M++ ++ NL + + +S
Sbjct: 467 LREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYS- 525
Query: 463 VADKSASFTDTSSLMDKSDLAESLIQEMRE--EAALSTIYKLNSS-IYFFCKGKMIGDAL 519
K L + ++ RE A L L S+ I CK ++G A+
Sbjct: 526 ----------------KGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAV 569
Query: 520 KIYRRMQEMKIRPTVETFYYLV--YGHSS 546
+ M + I P V T+ ++ +G S+
Sbjct: 570 SLIDEMTKEGISPNVVTYNSIIDAFGRSA 598
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 95/231 (41%), Gaps = 24/231 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++DA+ + G ++ A +IL M + +Y +++ + K F EA L +MR
Sbjct: 380 LLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMR--- 436
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST---IYKL 502
+ +A S+ S+ K +E + +RE A++ +
Sbjct: 437 --------------YLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTY 482
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
N+ + + K + K++ M+ + P + T+ L+ G+S +Y++ ++ R
Sbjct: 483 NALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAM----EVFR 538
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+S L LY L+ + G + +I M K+ + + + Y S
Sbjct: 539 EFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNS 589
>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 908
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 110/276 (39%), Gaps = 42/276 (15%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +I+ LI++G +E A ++L+ + G + Y S++ + K EAE L M +
Sbjct: 334 SGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAE 393
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD---------------------KSDL 482
L N ++ + F A +F + +++ K +
Sbjct: 394 RGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKM 453
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
AE L +EM ++ T+ S I +CK ++ A K+Y M I P TF L+
Sbjct: 454 AELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALIC 513
Query: 543 GHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602
G + + + L+ ++ +E +L + Y L+ + G R E++ M K+
Sbjct: 514 GLCQINKMAEASKLFDEM---VELKILP-NEVTYNVLIEGHCREGNTTRAFELLDEMIKK 569
Query: 603 NMYVDKLMYKS---------------EFLK--HHKH 621
+ D Y+ EF+ HHKH
Sbjct: 570 GLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKH 605
>gi|296082940|emb|CBI22241.3| unnamed protein product [Vitis vinifera]
Length = 1256
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 18/203 (8%)
Query: 382 LCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM 441
+C+ ++ L +GF AH ++D+ G +D T + L++ + K K F EA + + M
Sbjct: 726 VCNMFLEKLCVVGFTTIAHALVDEFLQQGCILDHTAHSHLISGFCKEKRFSEAFTIFESM 785
Query: 442 RKSCLVQNLSCEMVVSERFSEV--ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499
+ LV L +++ + +K+ + D S L E I +AL
Sbjct: 786 QAKNLVPCLDASILLIPQLCRANRVEKAIALKDLS-------LREQSIDSFSVHSAL--- 835
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD 559
+N FCK IG+A +++ M + P +E LV+G+ R +T L G
Sbjct: 836 --MNG----FCKTGRIGEAAILFQDMFSNGLLPDIEICNMLVFGYCQANSVRKVTELIGV 889
Query: 560 IKRNIESGVLAVSRDLYETLLLN 582
+ R ++V R++ L +N
Sbjct: 890 MIRKDLGFSISVYRNVVRLLCMN 912
>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 503
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 121/303 (39%), Gaps = 37/303 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+N K G + + W L + ++ I A G L+ A I +ME
Sbjct: 144 LMNSAVKGGGSLKEVWALYQDMVQRGISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKL 203
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC---------------EM 454
P + Y L+ AY +V EAE L+ +MR+ + N+ +
Sbjct: 204 NVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQF 263
Query: 455 VVSERFSEVADKSASFTDTSSLM---------DKSDLAESLIQEMREEAALSTIYKLNSS 505
VV+E E + S + D + ++ AE + M+ Y +
Sbjct: 264 VVAEGLIEEMEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTAL 323
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH---SSLEMYRDITILWGDIKR 562
I + + + A + + +++ + PTVET+ L+ + LEM + +W +K
Sbjct: 324 INAYAERRCPEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEM---VQAVWKSMK- 379
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK---SEFLKHH 619
+E V +R Y T+L F + G ++ ++I K Q D ++Y + +++
Sbjct: 380 -VEGCV--ATRVTYMTILDAFQKQGRYKEARDLIEEFKNQGHKPDLMVYNMLLNSYMRGG 436
Query: 620 KHL 622
+H+
Sbjct: 437 RHV 439
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/410 (19%), Positives = 162/410 (39%), Gaps = 51/410 (12%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIIL--------------AQ 220
P+ +N+++ R G + + M + G+ + ++ I+ A
Sbjct: 375 PNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAM 434
Query: 221 IHEMN---CQRDELKKFKCYIDQLS-TPFAHHYQQFYESLLSLHFKFDDIDAAGELILDM 276
EM+ C DE+ F ID L + YE +L + + I +
Sbjct: 435 FEEMDYKVCTPDEIT-FCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFF 493
Query: 277 NRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKM----EGKQEL 332
N R ++D K Y I N C LQ++ + D + K +G+
Sbjct: 494 NHGR--------KEDGHKIYKDMI---NQNCSPDLQLLNTYM--DCMFKAGEPEKGRAMF 540
Query: 333 VLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ 392
+ + + R+ + LI+G K G +E L S+K E ++ + VID +
Sbjct: 541 EEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMK-EQGCVLDTRAYNIVIDGFCK 599
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
G + A+ +L++M+ G TY S++ K+ EA L ++ + + N+
Sbjct: 600 CGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVI 659
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
+ + F +V + D A +++E+ ++ +Y NS + K
Sbjct: 660 YSSLIDGFGKVG--------------RIDEAYLILEELMQKGLTPNLYTWNSLLDALVKA 705
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
+ I +AL ++ M+E+K P T+ L+ G + + + W ++++
Sbjct: 706 EEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQK 755
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 86/214 (40%), Gaps = 25/214 (11%)
Query: 350 LINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
LI G+ K G+ +S LS LL K + L + ID+ ++G ++ A ++E
Sbjct: 209 LIRGFAKEGRVDSALS--LLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEA 266
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREA----EALLKQMRKSC------LVQNLSCEMVVSE 458
G D TY S++ K EA E L K R C ++ E
Sbjct: 267 NGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDE 326
Query: 459 RFSEVADKSASFTDTSSL-----------MDKSDLAESLIQEMREEAALSTIYKLNSSIY 507
+S + + A + S + M K D A + +EM+++AA + N I
Sbjct: 327 AYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAA-PNLSTYNILID 385
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
C+ + A ++ MQ+ + P V T +V
Sbjct: 386 MLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMV 419
>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 819
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 129/312 (41%), Gaps = 53/312 (16%)
Query: 354 YKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413
+ ++G +SE+S + +K+ T + +I A + G E A + M AG
Sbjct: 464 FGQNGMDSEVSGVFKEMKRAGFVPERETF-NTLISAYSRCGSFEQAMTVYRRMLDAGVTP 522
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLS-CEMV---------------V 456
D +TY ++L A + M+ ++E +L +M C L+ C ++
Sbjct: 523 DLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLA 582
Query: 457 SERFSEVADKSASFTDTSSLM-DKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
E +S V + A T L+ K DL AE E++E I LNS + + +
Sbjct: 583 EEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRR 642
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS-------SLEMYRDI------------ 553
+M+G A ++ M+E P++ T+ L+Y HS S E+ R+I
Sbjct: 643 QMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISY 702
Query: 554 -TILWG---DIKRNIESGVLAVSRD--------LYETLLLNFLQGGYFERVMEVIGYMKK 601
T+++ + + S + + RD Y T + ++ FE + V+ YM K
Sbjct: 703 NTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIK 762
Query: 602 QNMYVDKLMYKS 613
++ Y S
Sbjct: 763 HGCRPNQNTYNS 774
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 120/298 (40%), Gaps = 27/298 (9%)
Query: 320 KDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGE 379
K L E Q + H L++ Y K + E +L + E + F
Sbjct: 290 KRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEM--ELNGFSP 347
Query: 380 STLC-SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
S + + +I A + G L+ A ++ + M G D TY +LL+ + + A +
Sbjct: 348 SIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIF 407
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST 498
++MR + N+ C F ++ F D + D+ ++ LS
Sbjct: 408 EEMRNAGCKPNI-CTF---NAFIKMYGNRGKFVDMMKIFDEINV-----------CGLSP 452
Query: 499 -IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
I N+ + F + M + +++ M+ P ETF L+ +S + ++
Sbjct: 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVY 512
Query: 558 GDIKRNIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+R +++G V+ DL Y T+L +GG +E+ +V+ M+ ++L Y S
Sbjct: 513 ---RRMLDAG---VTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCS 564
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 63/319 (19%), Positives = 125/319 (39%), Gaps = 34/319 (10%)
Query: 297 LISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKK 356
L S+ PN G ++ EL E EL+ F G H +A
Sbjct: 103 LRSLIEPNFDSGQLDALLSELFEPFKDKPESTSSELLAFLKGLGFHKKFDLALCA----- 157
Query: 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST 416
W + +K++ S ++++ + VI L + G + +A ++ + ++ G +D
Sbjct: 158 ------FDWFMK--QKDYQSMLDNSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDVY 209
Query: 417 TYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSL 476
+Y SL++A+ +REA + K+M + L V+ F ++ T
Sbjct: 210 SYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKIT----- 264
Query: 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
SL+++M+ + Y N+ I +G + +A +++ M+ T
Sbjct: 265 --------SLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVT 316
Query: 537 FYYL--VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVME 594
+ L VYG S +R + + +E + S Y +L+ + + G + ME
Sbjct: 317 YNALLDVYGKS----HRPKEAM--KVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAME 370
Query: 595 VIGYMKKQNMYVDKLMYKS 613
+ M ++ D Y +
Sbjct: 371 LKNQMAEKGTKPDVFTYTT 389
>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 660
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 14/171 (8%)
Query: 373 EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
E F + C+ +IDA ++ +++A ++ +M+ G D+ TY +L+ + V +
Sbjct: 463 EVGGFCDIVSCNILIDAFCKVKKVKSALELFKEMDYKGMQADAVTYGTLINGLFSVGYYN 522
Query: 433 EAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE 492
AE L +QM K+ + N++ ++ +V D A+ + M +
Sbjct: 523 LAEELFEQMLKAQIDPNVNLYNIMLHHLCKVGDLKR--------------AQKIFLHMIQ 568
Query: 493 EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ L I N+ IY+ K +AL +++ M+ + P TF YL+ G
Sbjct: 569 KEILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFKYLING 619
>gi|302813417|ref|XP_002988394.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
gi|300143796|gb|EFJ10484.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
Length = 388
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 19/228 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
V++ + G L+ A L M AG D TY +L+ ++K++ F A LL+QM S
Sbjct: 17 VVNGFARAGHLDGALGTLRMMRKAGCDPDEVTYNTLIDVFHKLERFDSARELLEQMWDSG 76
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ V++E ++ V ASF + ++ A+ +++ M + + N+
Sbjct: 77 IRPG-----VMAETYNNVI---ASFCEVCNVRK----AKGILELMIDSGCKPDVVTYNTL 124
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I CK + DAL++ M+EM+ P T+ ++ G L R T + I
Sbjct: 125 ISGLCKVRRADDALQL---MREMEPAPNTITYNTVING---LWRSRKDTEAQALLDEMIS 178
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G S Y ++ N + E+ ++V YM+K+ D++ + +
Sbjct: 179 VGC-PFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCETDEVTFAT 225
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 106/265 (40%), Gaps = 44/265 (16%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+ING + K++E LL + F ST + VI L + +E A D+ M
Sbjct: 156 VINGLWRSRKDTEAQALLDEMISVGCPFSVSTY-NCVIANLCRSREMEKAVDVFLYMRKK 214
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
D T+ +L+ + + K +A L M ++ + ++ S
Sbjct: 215 KCETDEVTFATLVDGFLRDKRLEDAGGTLDWMARAGIPSDVK-----------------S 257
Query: 470 FTDT-SSLMDKSDLAES--LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+T ++L D+ ++ + M + T+ N + CK + AL ++R MQ
Sbjct: 258 YTKLLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYNVLLKGLCKALRVEHALVLFREMQ 317
Query: 527 EMKIRPTVETFYYLVYG-------HSSLEMYRDITILW-GDIKRNIESGVLAVSRDLYET 578
E +I+P V ++ ++ G +++++RD + L DI +ET
Sbjct: 318 EREIQPDVVSYTTVIKGLCAARRIDEAIDLFRDTSFLEPNDIT--------------HET 363
Query: 579 LLLNFLQGGYFERVMEVIGYMKKQN 603
L + + G E V G K QN
Sbjct: 364 LRIGLEKSGRLEDYSSVTGR-KDQN 387
>gi|225447562|ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Vitis vinifera]
Length = 616
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 107/253 (42%), Gaps = 29/253 (11%)
Query: 366 LLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST--TYKSLLT 423
++L I ++H F + V+ ++ G ++ + + + + DS+ + SL
Sbjct: 196 IILHILTKNHKFKSA---ESVLKGILGSGSIDHPSKLFEAILYSYRICDSSPCVFDSLFK 252
Query: 424 AYYKVKMFREAEALLKQMRKSCLVQNL-SCEMVVSERFSEVADKSASFTDTSSLMDKSDL 482
Y ++K R A + QM+ + + SC +S S + + D+
Sbjct: 253 TYAQMKKLRNAIDVFCQMKDYGFLPRVESCNAYISASIS---------------LQRGDI 297
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A + +EM+ +Y LN + FCK + A+++++RM+ M PT+ ++ L+
Sbjct: 298 ALTFYREMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKRMETMGFSPTITSYNTLIA 357
Query: 543 GHSSLEMYRDITILWGDIKRNIESGVLAVSRD--LYETLLLNFLQGGYFERVMEVIGYMK 600
G Y + +L +K I V D + TL+ F +GG ++ MK
Sbjct: 358 G------YCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMK 411
Query: 601 KQNMYVDKLMYKS 613
++ + + Y +
Sbjct: 412 ANDVVPNTITYNT 424
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 93/239 (38%), Gaps = 35/239 (14%)
Query: 305 LRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELS 364
L G+KL+I L+EK+ + + + V F LING+ + GK E +
Sbjct: 365 LNSGMKLKI---LMEKNGV-----RPDDVTFNT------------LINGFCRGGKLHEAN 404
Query: 365 WLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424
+ S K + + + +I+ Q+G E + D+M G D TY +L+
Sbjct: 405 -KIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILG 463
Query: 425 YYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE 484
++A L+K++ + LV N S FS + + S+ A
Sbjct: 464 LCMEGRTKKAAYLVKELDRENLVPN-------SSTFS-------ALITGQCVRKNSERAF 509
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
L + M + I FCK + A+++ R M E I P +T L G
Sbjct: 510 QLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVREMSERSIAPDSDTLSELCRG 568
>gi|225452865|ref|XP_002278558.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15280-like [Vitis vinifera]
Length = 1273
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 18/203 (8%)
Query: 382 LCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM 441
+C+ ++ L +GF AH ++D+ G +D T + L++ + K K F EA + + M
Sbjct: 743 VCNMFLEKLCVVGFTTIAHALVDEFLQQGCILDHTAHSHLISGFCKEKRFSEAFTIFESM 802
Query: 442 RKSCLVQNLSCEMVVSERFSEV--ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499
+ LV L +++ + +K+ + D S L E I +AL
Sbjct: 803 QAKNLVPCLDASILLIPQLCRANRVEKAIALKDLS-------LREQSIDSFSVHSAL--- 852
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD 559
+N FCK IG+A +++ M + P +E LV+G+ R +T L G
Sbjct: 853 --MNG----FCKTGRIGEAAILFQDMFSNGLLPDIEICNMLVFGYCQANSVRKVTELIGV 906
Query: 560 IKRNIESGVLAVSRDLYETLLLN 582
+ R ++V R++ L +N
Sbjct: 907 MIRKDLGFSISVYRNVVRLLCMN 929
>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
Length = 1023
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 114/249 (45%), Gaps = 25/249 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK-S 444
+ID + + G +EAA + ++M+ G D+ TY S++ Y KV + ++M+ S
Sbjct: 139 MIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMS 198
Query: 445 CLVQNLSCEMVVS------------ERFSEVADKS--ASFTDTSSLMD---KSDLAESLI 487
C ++ +++ E F E+ + S+L+D K D+ + +
Sbjct: 199 CEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAL 258
Query: 488 Q---EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ +MR + + S + +CK + DA ++ M ++ + V T+ L+ G
Sbjct: 259 KFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGL 318
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
+E ++ L+G + + +GV+ + Y L+ F++ +R +E++ MK + +
Sbjct: 319 CDVERIKEAEELFGKM---VTAGVIP-NLASYTALIHGFVKAKNMDRALELLDEMKGRGI 374
Query: 605 YVDKLMYKS 613
D L+Y +
Sbjct: 375 KPDLLLYGT 383
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 16/156 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ ++DA ++G L A + D+M G + TY +L+ V+ +EAE L +M
Sbjct: 277 TSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVT 336
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ ++ NL+ + F + + MD+ A L+ EM+ +
Sbjct: 337 AGVIPNLASYTALIHGFVKAKN-----------MDR---ALELLDEMKGRGIKPDLLLYG 382
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
+ I+ C + I A + MQE I+ TF Y
Sbjct: 383 TFIWSLCGLEKIEAAKVVMNEMQEKGIK--ANTFIY 416
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 114/269 (42%), Gaps = 29/269 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCS--DVIDALIQLGFLEAAHDILDDME 407
LI+ Y K G+ E LL S+ + + L S +I+ L + G ++ A +IL++M
Sbjct: 255 LIDAYCKMGRIDEAFGLLKSMSSKGM---QPNLISYNVIINGLCREGSMKEAWEILEEMG 311
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY +LL Y K F +A + +M V+N V+
Sbjct: 312 YKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM-----VRN------------GVSPSV 354
Query: 468 ASFTDTSSLMDKS---DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
++T + M K+ + A +MR + I F + ++ +A +I
Sbjct: 355 VTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNE 414
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
M E P+V T+ ++GH LE + G ++ +E G LA Y T++ F
Sbjct: 415 MTESGFSPSVVTYNAFIHGHCVLERMEEA---LGVVQEMVEKG-LAPDVVSYSTIISGFC 470
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ G +R ++ M ++ + D + Y S
Sbjct: 471 RKGELDRAFQMKQEMVEKGVSPDAVTYSS 499
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 84/195 (43%), Gaps = 17/195 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMEL 408
L+NGY K G + L++ + + S + + +I+++ + L A + D M +
Sbjct: 325 LLNGYCKEGNFHQ--ALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRI 382
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G + TY +L+ + + + EA +L +M +S FS
Sbjct: 383 RGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTES--------------GFSPSVVTYN 428
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+F ++++ + A ++QEM E+ + ++ I FC+ + A ++ + M E
Sbjct: 429 AFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEK 488
Query: 529 KIRPTVETFYYLVYG 543
+ P T+ L+ G
Sbjct: 489 GVSPDAVTYSSLIQG 503
>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
Length = 897
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 107/252 (42%), Gaps = 29/252 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDM-ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
VI G ++AA DI+ +M E G + TY ++++ + KV EA + +M
Sbjct: 520 VIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTK 579
Query: 445 -----------------CLVQNLSCEMVVSERFSE--VADKSASFT--DTSSLMD-KSDL 482
C L ++ +R E VA A++ + MD +
Sbjct: 580 GEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTE 639
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A L++EM + ++ N I CK + AL+I+ M +R TV T+ L+Y
Sbjct: 640 AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIY 699
Query: 543 GHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
S ++ L+ + ++R I ++ LY L+ + G +R E++G M+K
Sbjct: 700 ALSKKGQVQETDKLFDEAVRRGIRPDLV-----LYNALINSHSTSGNIDRAFEIMGEMEK 754
Query: 602 QNMYVDKLMYKS 613
+ + D + Y +
Sbjct: 755 KRIAPDDVTYNT 766
>gi|242094080|ref|XP_002437530.1| hypothetical protein SORBIDRAFT_10g028820 [Sorghum bicolor]
gi|241915753|gb|EER88897.1| hypothetical protein SORBIDRAFT_10g028820 [Sorghum bicolor]
Length = 540
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 86/228 (37%), Gaps = 20/228 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDM--ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+DAL + G AA ++ + E G D Y LL + + + + E L MR
Sbjct: 153 TVDALCKEGHPRAAARLVAQVRREDGGWAPDVRVYNILLNGWSRARRLDKVEKLWAAMR- 211
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
E +F D +M + D A +L+ +MREE + + N
Sbjct: 212 -------------DEGVRPTVVTYGTFIDAYCVMRRPDQAMTLLDQMREEGIQANLLTCN 258
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+Y + GDA K+ + + P + TF LV+G+ + D+ G +K
Sbjct: 259 PIVYALAQAGRFGDAHKVLEKFPLYGVSPNISTFNSLVFGYCK---HGDLAGASGVLKAM 315
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ G+ +R Y + F + E M + M D+ Y
Sbjct: 316 LGRGISPTART-YNYFFMVFSRNRSIELGMNLYVKMVSNGYAPDQFTY 362
>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
Length = 695
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 100/259 (38%), Gaps = 45/259 (17%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VID L + G L A + M+ G D TY SL+ Y K E E L+ +MRKS
Sbjct: 206 VIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSG 265
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
++ + FS+ + + A S EM+ + ++ + ++
Sbjct: 266 CAADVVTYNALINCFSKFG--------------RMEKAYSYFGEMKRQGVVANVVTFSTF 311
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN-- 563
+ FCK ++ +A+K++ +M+ + P T+ LV G D +L ++
Sbjct: 312 VDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGL 371
Query: 564 -----------------------------IESGVLAVSRDLYETLLLNFLQGGYFERVME 594
+E G + + LY TL+ ER ++
Sbjct: 372 VPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALD 431
Query: 595 VIGYMKKQNMYVDKLMYKS 613
++ MK + M +D +Y +
Sbjct: 432 LLNQMKNKGMELDVSLYGT 450
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 4/129 (3%)
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
L++ + + + ++ N I F CK + +A ++ RM+ M P V T+ L+ G+
Sbjct: 186 GLVRRLFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGY 245
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
++ L ++++ SG A Y L+ F + G E+ G MK+Q +
Sbjct: 246 GKCGDLEEVEQLVSEMRK---SGC-AADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGV 301
Query: 605 YVDKLMYKS 613
+ + + +
Sbjct: 302 VANVVTFST 310
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 81/194 (41%), Gaps = 15/194 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+++G K GK +E +L S+ + L + +I E A D+L+ M+
Sbjct: 381 MVDGLCKEGKVAEADNVL-SLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNK 439
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G +D + Y +L+ K + EA++LL +M L N + + + +S
Sbjct: 440 GMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESE- 498
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
A +L+ ++ + + + I CK I +A+ + +M+E+
Sbjct: 499 -------------AVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELG 545
Query: 530 IRPTVETFYYLVYG 543
+ P V+ + L+ G
Sbjct: 546 LDPNVQAYTALIDG 559
>gi|111154024|dbj|BAF02664.1| pentatricopeptide repeat protein [Physcomitrella patens]
gi|111185880|dbj|BAF02672.1| pentatricopeptide repeat protein [Physcomitrella patens]
Length = 531
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 14/164 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++ A + G + + IL+ M+ +G +T Y +L+ + K + +A A+L+ M+
Sbjct: 290 LVAAYGKAGLTDNVNKILETMKASGVEASTTLYNTLINIHSKAEAPEKARAVLQLMQ--- 346
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
C+ + E + + LM AES++ EM+
Sbjct: 347 -ADGCQCDEITYTSVMEAYSR-----NKQPLM-----AESMMGEMKRAGIQPGPVSYGVL 395
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEM 549
I +C+ +GDA +I R MQ K +PTVE + ++ G++S +M
Sbjct: 396 ISAYCRAGRLGDAERILRAMQNAKCKPTVEIYNMMISGYASAKM 439
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 90/199 (45%), Gaps = 17/199 (8%)
Query: 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
+R A L+ Y K G ++ +L ++K +TL + +I+ + E A +L
Sbjct: 284 DRPYAALVAAYGKAGLTDNVNKILETMKASGVE-ASTTLYNTLINIHSKAEAPEKARAVL 342
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVSERFSE 462
M+ G D TY S++ AY + K AE+++ +M+++ + +S +++S
Sbjct: 343 QLMQADGCQCDEITYTSVMEAYSRNKQPLMAESMMGEMKRAGIQPGPVSYGVLIS----- 397
Query: 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
++ L D AE +++ M+ T+ N I + KM A +++
Sbjct: 398 ------AYCRAGRLGD----AERILRAMQNAKCKPTVEIYNMMISGYASAKMRSQAERMF 447
Query: 523 RRMQEMKIRPTVETFYYLV 541
+ MQ+ +RP TF L+
Sbjct: 448 QTMQDCGLRPDAVTFNTLI 466
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 490 MREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEM 549
+ +++ L+++ NS++ K + DA+ I++R + ++P V ++ L+ G L+
Sbjct: 136 LEDDSQLNSVKDYNSALLNCVKDGRMRDAMTIFKRFEGAGLKPDVVSYTALIQGFGKLKS 195
Query: 550 YRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKL 609
Y +T ++ ++RN L L L+ + GG + Y + Q + D +
Sbjct: 196 YNKVTDVFSRMQRNRCPPDL----KLCTVLISTYGNGGLPVLAESAMQYAQAQGLQPDAI 251
Query: 610 MYKS 613
Y +
Sbjct: 252 AYTA 255
>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
Length = 902
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 107/252 (42%), Gaps = 29/252 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDM-ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
VI G ++AA DI+ +M E G + TY ++++ + KV EA + +M
Sbjct: 525 VIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTK 584
Query: 445 -----------------CLVQNLSCEMVVSERFSE--VADKSASFT--DTSSLMD-KSDL 482
C L ++ +R E VA A++ + MD +
Sbjct: 585 GEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTE 644
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A L++EM + ++ N I CK + AL+I+ M +R TV T+ L+Y
Sbjct: 645 AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIY 704
Query: 543 GHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
S ++ L+ + ++R I ++ LY L+ + G +R E++G M+K
Sbjct: 705 ALSKKGQVQETDKLFDEAVRRGIRPDLV-----LYNALINSHSTSGNIDRAFEIMGEMEK 759
Query: 602 QNMYVDKLMYKS 613
+ + D + Y +
Sbjct: 760 KRIAPDDVTYNT 771
>gi|168056841|ref|XP_001780426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695174|dbj|BAD67152.1| PpPPR_38 [Physcomitrella patens]
gi|162668102|gb|EDQ54716.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 513
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 14/164 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++ A + G + + IL+ M+ +G +T Y +L+ + K + +A A+L+ M+
Sbjct: 290 LVAAYGKAGLTDNVNKILETMKASGVEASTTLYNTLINIHSKAEAPEKARAVLQLMQ--- 346
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
C+ + E + + LM AES++ EM+
Sbjct: 347 -ADGCQCDEITYTSVMEAYSR-----NKQPLM-----AESMMGEMKRAGIQPGPVSYGVL 395
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEM 549
I +C+ +GDA +I R MQ K +PTVE + ++ G++S +M
Sbjct: 396 ISAYCRAGRLGDAERILRAMQNAKCKPTVEIYNMMISGYASAKM 439
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 17/198 (8%)
Query: 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
+R A L+ Y K G ++ +L ++K +TL + +I+ + E A +L
Sbjct: 284 DRPYAALVAAYGKAGLTDNVNKILETMKASGVE-ASTTLYNTLINIHSKAEAPEKARAVL 342
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVSERFSE 462
M+ G D TY S++ AY + K AE+++ +M+++ + +S +++S
Sbjct: 343 QLMQADGCQCDEITYTSVMEAYSRNKQPLMAESMMGEMKRAGIQPGPVSYGVLIS----- 397
Query: 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
++ L D AE +++ M+ T+ N I + KM A +++
Sbjct: 398 ------AYCRAGRLGD----AERILRAMQNAKCKPTVEIYNMMISGYASAKMRSQAERMF 447
Query: 523 RRMQEMKIRPTVETFYYL 540
+ MQ+ +RP Y+
Sbjct: 448 QTMQDCGLRPDAAEDCYI 465
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 490 MREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEM 549
+ +++ L+++ NS++ K + DA+ I++R + ++P V ++ L+ G L+
Sbjct: 136 LEDDSQLNSVKDYNSALLNCVKDGRMRDAMTIFKRFEGAGLKPDVVSYTALIQGFGKLKS 195
Query: 550 YRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKL 609
Y +T ++ ++RN L L L+ + GG + Y + Q + D +
Sbjct: 196 YNKVTDVFSRMQRNRCPPDL----KLCTVLISTYGNGGLPVLAESAMQYAQAQGLQPDAI 251
Query: 610 MYKS 613
Y +
Sbjct: 252 AYTA 255
>gi|242058007|ref|XP_002458149.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
gi|241930124|gb|EES03269.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
Length = 795
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C ++ + G ++ A + +M G P + TY +L+ Y K K F +A ALL +M
Sbjct: 436 CHSLLLGYCEKGCMDEALKLYSEMPGKGFPPNEVTYTTLMKGYIKKKAFDKAYALLNEMH 495
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
++ +SC E + + ++D+ + +++ E + T
Sbjct: 496 QN----GVSC----GEYTYNI------LINGLCMVDRVCEVDEMLKRFVSEGFVPTTMTY 541
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
NS I F K M+G AL +YR+M E I P + T+ + G+
Sbjct: 542 NSIINGFVKAGMMGSALAMYRQMCEKGITPNIVTYTSFIDGY 583
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 103/261 (39%), Gaps = 22/261 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+ GY K + LL + + S GE T + +I+ L + + ++L
Sbjct: 474 LMKGYIKKKAFDKAYALLNEMHQNGVSCGEYTY-NILINGLCMVDRVCEVDEMLKRFVSE 532
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + TY S++ + K M A A+ +QM + + N+ S
Sbjct: 533 GFVPTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGITPNIV--------------TYTS 578
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
F D + DLA L+ MR I N+ I FCK + AL + +
Sbjct: 579 FIDGYCRTNCCDLAVKLLIYMRCNGIHPDIAAYNAFINMFCKQGNMSHALHFLVLLLKDG 638
Query: 530 IRPTVETFYYLVYGHSSLEMYRDIT-ILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588
+ P V + V G+ +L+M + + + IK+ I A ++Y TL+ F + G
Sbjct: 639 LTPNVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRI-----AADTEIYTTLIDGFSKVGN 693
Query: 589 FERVMEVIGYM-KKQNMYVDK 608
+E+ M N+ DK
Sbjct: 694 VAFALELYSEMLANHNIPDDK 714
>gi|302795973|ref|XP_002979749.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
gi|300152509|gb|EFJ19151.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
Length = 388
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 19/230 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ V++ + G L+ A L M AG D TY +L+ ++K++ F A LL+QM
Sbjct: 15 NSVVNGFARAGHLDGALGTLRMMRKAGCNPDEVTYNTLIDVFHKLERFDSARELLEQMWD 74
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
S + V++E ++ V ASF + ++ A+ +++ M + + N
Sbjct: 75 SGIRPG-----VMAETYNNVI---ASFCEVCNVRK----AKGILELMIDSGCKPDVVTYN 122
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ I CK + DAL++ M+EM+ P T+ ++ G L R T +
Sbjct: 123 TLISGLCKLRRADDALQL---MREMEPAPNTITYNTVING---LWRSRKDTEAQALLDEM 176
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
I G S Y ++ N + E+ ++V YM+K+ D++ + +
Sbjct: 177 ISVGC-PFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCEADEVTFAT 225
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 106/265 (40%), Gaps = 44/265 (16%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+ING + K++E LL + F ST + VI L + +E A D+ M
Sbjct: 156 VINGLWRSRKDTEAQALLDEMISVGCPFSVSTY-NCVIANLCRSREMEKAVDVFLYMRKK 214
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
D T+ +L+ + + K +A L M ++ + ++ S
Sbjct: 215 KCEADEVTFATLVDGFLRDKRLEDAGGTLDWMARAGIPSDVK-----------------S 257
Query: 470 FTDT-SSLMDKSDLAES--LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+T ++L D+ ++ + M + T+ N + CK + AL ++R MQ
Sbjct: 258 YTKLLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYNVLLKGLCKALRVEHALVLFREMQ 317
Query: 527 EMKIRPTVETFYYLVYG-------HSSLEMYRDITIL-WGDIKRNIESGVLAVSRDLYET 578
E +I+P V ++ ++ G +++++RD + L DI +ET
Sbjct: 318 EREIQPDVVSYTTVIKGLCAARRIDEAIDLFRDPSFLEPNDIT--------------HET 363
Query: 579 LLLNFLQGGYFERVMEVIGYMKKQN 603
L + + G E V G K QN
Sbjct: 364 LRIGLEKSGRLEDYSSVTGR-KDQN 387
>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Glycine max]
Length = 903
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 120/271 (44%), Gaps = 27/271 (9%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDI 402
A++ L++G +K GK + L++ + + FG + + +I++L + G L+ A +
Sbjct: 332 AVSGLVDGLRKQGKIDDAYELVVKVGR----FGFVPNLFVYNALINSLCKGGDLDKAELL 387
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462
+M L + TY L+ ++ + A + +M +Q+ E V + ++
Sbjct: 388 YSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRM-----IQDGIGETVYA--YNS 440
Query: 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
+ + F D S+ AESL EM + T S I +CK + A K+Y
Sbjct: 441 LINGQCKFGDLSA-------AESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLY 493
Query: 523 RRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLL 581
+M + I P V TF L+ G S + + L+ + ++R I+ + Y L+
Sbjct: 494 NKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKP-----TEVTYNVLIE 548
Query: 582 NFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
+ + G ++ E++ M ++ + D Y+
Sbjct: 549 GYCRDGKIDKAFELLEDMHQKGLVPDTYTYR 579
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/382 (19%), Positives = 141/382 (36%), Gaps = 65/382 (17%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
IKP + +N+++ R G K ++E M Q G+V D ++ L I + C +
Sbjct: 536 IKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPL--ISGL-CSTGRVS 592
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDA 292
K K +ID L + Y +LL + Q+
Sbjct: 593 KAKDFIDDLHKQNVKLNEMCYSALLHGYC----------------------------QEG 624
Query: 293 QKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQE----LVLFRNGKLLHSNRAMA 348
+ +S ++ G+ + ++ + D LK ++ L + L N
Sbjct: 625 RLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYT 684
Query: 349 KLINGYKKHG--KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+I+ Y K G K + W L+ ++ F + +++ L + G ++ A + M
Sbjct: 685 SMIDTYSKEGSFKKAFECWDLMVTEE---CFPNVVTYTALMNGLCKAGEMDRAGLLFKRM 741
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE-----RFS 461
+ A P +S TY L K +EA L M K L ++ +++ RF
Sbjct: 742 QAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIIIRGFCKLGRFH 801
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
E A ++ EM E ++ IY +C+ +G ++K+
Sbjct: 802 E--------------------ATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKL 841
Query: 522 YRRMQEMKIRPTVETFYYLVYG 543
+ M + P + + L+YG
Sbjct: 842 WDTMLNRGLEPDLVAYNLLIYG 863
>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
Length = 667
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 120/288 (41%), Gaps = 36/288 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++NG K G S L+ LL E + + S +ID+L + G ++AA + +ME
Sbjct: 176 IVNGICKSGDTS-LALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETK 234
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV------------- 456
G TY SL+ K + + LLK M ++ N+ V+
Sbjct: 235 GIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEA 294
Query: 457 SERFSEVADKSASFTDTS--SLMDKSDL------AESLIQEMREEAALSTIYKLNSSIYF 508
+E + E+ K S + SLMD + A +++ M I S I
Sbjct: 295 NELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKG 354
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEMYRDITILWGDIKRNIE 565
+CK K + + +K++R++ + + T+ LV G LE+ ++ + +
Sbjct: 355 YCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEEL------FQEMVS 408
Query: 566 SGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
GVL D+ Y LL G E+ +E+ ++K M +D +MY
Sbjct: 409 LGVLP---DVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMY 453
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 15/194 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+ + K GK E + L + + S T S ++D L A+++LD M
Sbjct: 281 LIDVFVKEGKLQEANELYKEMITKGISPNTITYNS-LMDGYCMQNRLSEANNMLDLMVRN 339
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
D T+ SL+ Y KVK E L +++ K LV N ++ + F +
Sbjct: 340 NCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSG----- 394
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
K ++AE L QEM L + + C + AL+I+ +Q+ K
Sbjct: 395 ---------KLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 445
Query: 530 IRPTVETFYYLVYG 543
+ + + ++ G
Sbjct: 446 MNLDIVMYTIIIEG 459
>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 29/239 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I AL ++G+LE A ++ D M G + + L+ Y + + LL +MR S
Sbjct: 159 LISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSSG 218
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL--AESLIQEMREEAALSTIYKLN 503
+ N + A T SSL + AE L+++MRE I N
Sbjct: 219 ALPN----------------RVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFN 262
Query: 504 SSIYFFCKGKMIGDALKIYRRMQ---EMKI-RPTVETFYYLVYGHSSLEMYRDITILWGD 559
I CK I +A +I+R MQ EM + +P T+ ++ G S M+ + ++ D
Sbjct: 263 CRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIF-D 321
Query: 560 IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKH 618
+N E+ +S Y +L ++ G ++ M ++N+ + +Y L H
Sbjct: 322 SMKNSET----LSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPN--LYSYNILVH 374
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 19/162 (11%)
Query: 387 IDALIQLGFLEAAHDILDDMEL---AGHPMDST-TYKSLLTAYYKVKMFREAEALLKQMR 442
I AL + G + A I DM++ G P +T TY +L + MF EA A+ M+
Sbjct: 265 IAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMK 324
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
S + S + + + L++ A ++ EM E+ +Y
Sbjct: 325 NSETLSLRSYNIWM-----------LGLVRSGKLLE----AHLILNEMAEKNIKPNLYSY 369
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
N ++ CK M DA I M+E + P T+ L++G+
Sbjct: 370 NILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGY 411
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 101/243 (41%), Gaps = 36/243 (14%)
Query: 401 DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL---VQNLSCEMVVS 457
D+LD+M +G + Y +++++ EAE L+++MR+ L + +C +
Sbjct: 209 DLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAAL 268
Query: 458 ERFSEVADKSASFTD---------------TSSLMDKSDLAESLIQEMR------EEAAL 496
+ ++ + S F D T +LM + +E + +E R + +
Sbjct: 269 CKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSET 328
Query: 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
++ N + + + +A I M E I+P + ++ LV+G M+ D +
Sbjct: 329 LSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSI 388
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNF------LQGGYFERVMEVIGYMKKQNMYVDKLM 610
G ++ ESGV A Y TLL + L+ Y R M +G NMY ++
Sbjct: 389 LGLMR---ESGV-APDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFP--NMYTCNIL 442
Query: 611 YKS 613
S
Sbjct: 443 LHS 445
>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 669
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 109/262 (41%), Gaps = 31/262 (11%)
Query: 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST 416
G E + +L +H +TLC+ VI+A+ + G ++ A+D L++M + G D+
Sbjct: 293 RGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTI 352
Query: 417 TYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSS 475
+Y ++L + + A+ LL +M RK+C +F
Sbjct: 353 SYTTVLRGLCRAGRWEHAKELLPEMVRKNC------------------PPNEVTFNTFIC 394
Query: 476 LMDKSDLAES---LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP 532
++ + L E LI+ M E I N+ ++ FC + AL+++ + P
Sbjct: 395 ILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELF---NNLPCEP 451
Query: 533 TVETFYYLVYGHSSLE-MYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFER 591
T+ L+ G E + +L G I+++ + + L+ F Q G+ E
Sbjct: 452 NTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVT-----FNVLVSFFCQKGFVEE 506
Query: 592 VMEVIGYMKKQNMYVDKLMYKS 613
ME++ M + + + + +
Sbjct: 507 AMELVNQMMEHGCTPNLITFNT 528
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 109/260 (41%), Gaps = 32/260 (12%)
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHS---FGESTLCSDVIDALIQLGFLEAAHDILDD 405
KLI + G+ S+ + +L + + F +TL + + G L+AA ++
Sbjct: 79 KLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTL----VAGYCRYGRLDAARRLIAS 134
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD 465
M + P D+ TY ++ +A ALL M L + +V E
Sbjct: 135 MPV---PPDAYTYTPIIRGLCDRGRVGDALALLDDM----LQRGCQPSVVTYTVLLEAVC 187
Query: 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
KS+ F + +++D EMR + I N I C+ + DA +I R+
Sbjct: 188 KSSGFGEAMNVLD----------EMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRL 237
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI--KRNIESGVLAVSRDLYETLLLNF 583
+P + ++ ++ G + + D+ +L+ ++ K+ + + V ++ L+ F
Sbjct: 238 SSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEV------TFDMLVRFF 291
Query: 584 LQGGYFERVMEVIGYMKKQN 603
+GG ER ++V+ M +
Sbjct: 292 CRGGMVERAIQVLQQMSQHG 311
>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 701
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/302 (18%), Positives = 137/302 (45%), Gaps = 27/302 (8%)
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL 393
L NG L ++ M ++ + + G+ +E +++ ++ + + T+ + V++ ++L
Sbjct: 137 LLANGNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITM-NCVLEIAVEL 195
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSC 452
G +E A ++ D+M + G DS++YK ++ ++ +EA+ L M ++ + N +C
Sbjct: 196 GLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATC 255
Query: 453 EMVVSE------------RFSEVADKS--ASFTDTSSLMD----KSDLAES--LIQEMRE 492
++++ F ++ D + + +SL+D K + ++ +++EM
Sbjct: 256 TLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVR 315
Query: 493 EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM-QEMKIRPTVETFYYLVYGHSSLEMYR 551
+Y + I CK A +++ ++ + +P V T+ ++ G+ +
Sbjct: 316 NGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLN 375
Query: 552 DITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+L+ +K E G+ + + Y TL+ + G F R E++ M + + Y
Sbjct: 376 RAEMLFSRMK---EQGLFP-NVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTY 431
Query: 612 KS 613
+
Sbjct: 432 NA 433
>gi|255661210|gb|ACU25774.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 426
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 128/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G + LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDDALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ AG D Y S++ + K K+FREA +L+ +MR++ +V + L V +++F
Sbjct: 71 KRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVENQKF 130
Query: 461 SEVADKSAS---------------FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
E A D +D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYG-KTLEHEKANNLIQEMHNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D ++Y++ + + +
Sbjct: 250 IEPNAIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYER 301
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 46/235 (19%), Positives = 100/235 (42%), Gaps = 35/235 (14%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F +A + L++M + + ++V+ E++ K ++
Sbjct: 8 DRYTYSTLITHFGKEGLFDDALSWLQKMEQD----RVPGDLVLYSNLIELSRKLCDYSKA 63
Query: 474 SSLMDK-------SDL------------------AESLIQEMREEAALSTIYKLNSSIYF 508
S+ + DL A SLI EMRE + ++ +
Sbjct: 64 ISIFSRLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTM 123
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESG 567
+ + + +AL ++ M+E+K + T ++ + L+M ++ + W K IE
Sbjct: 124 YVENQKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPN 183
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHL 622
V++ Y TLL + F + + M+++++ + + Y + + + K L
Sbjct: 184 VVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTL 233
>gi|255661136|gb|ACU25737.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 426
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + + N L V +++F
Sbjct: 71 KRSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + K
Sbjct: 250 IEPNSIT-----YSTIISIWSKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYEK 301
Score = 42.4 bits (98), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
Length = 607
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 23/173 (13%)
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL 446
IDA+ + G +E A +L DME G + TY +L+ Y K++ + EA L ++M KS
Sbjct: 94 IDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKM-KSMR 152
Query: 447 VQ-------NLSCEMVVSERFSEVAD---------------KSASFTDTSSLMDKSDLAE 484
+Q L V + +++E+A+ S + + D+
Sbjct: 153 IQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGRLDIVS 212
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
L+Q+MR+ ++ ++ I + K M GDA +Y +E ++P V F
Sbjct: 213 ILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLF 265
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 98/244 (40%), Gaps = 27/244 (11%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKM-FREAEALLKQMRKSCLV---QNLSCEMVVS 457
+L+ M+ AG + +Y +++ A K + R +QM K L + + +
Sbjct: 3 VLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAAC 62
Query: 458 ERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGD 517
R + D A F + L D IY N+ I CK +
Sbjct: 63 SRVGHLEDARAVFDEMIHLGIGRD-----------------IYTYNTFIDAICKCGNMEL 105
Query: 518 ALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYE 577
A+++ M+ ++P V T+ L+ G+S LE Y + L +K S + + R Y
Sbjct: 106 AMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKMK----SMRIQLDRVCYN 161
Query: 578 TLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQS 637
TLL +++ G + + V M++ + D + Y S + K RL + + +
Sbjct: 162 TLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQ--GRLDIVSILVQDMR 219
Query: 638 KRLV 641
KR V
Sbjct: 220 KRGV 223
>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 29/239 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I AL ++G+LE A ++ D M G + + L+ Y + + LL +MR S
Sbjct: 159 LISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSSG 218
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL--AESLIQEMREEAALSTIYKLN 503
+ N + A T SSL + AE L+++MRE I N
Sbjct: 219 ALPN----------------RVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFN 262
Query: 504 SSIYFFCKGKMIGDALKIYRRMQ---EMKI-RPTVETFYYLVYGHSSLEMYRDITILWGD 559
I CK I +A +I+R MQ EM + +P T+ ++ G S M+ + ++ D
Sbjct: 263 CRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIF-D 321
Query: 560 IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKH 618
+N E+ +S Y +L ++ G ++ M ++N+ + +Y L H
Sbjct: 322 SMKNSET----LSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPN--LYSYNILVH 374
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 19/162 (11%)
Query: 387 IDALIQLGFLEAAHDILDDMEL---AGHPMDST-TYKSLLTAYYKVKMFREAEALLKQMR 442
I AL + G + A I DM++ G P +T TY +L + MF EA A+ M+
Sbjct: 265 IAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMK 324
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
S + S + + + L++ A ++ EM E+ +Y
Sbjct: 325 NSETLSLRSYNIWM-----------LGLVRSGKLLE----AHLILNEMAEKNIKPNLYSY 369
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
N ++ CK M DA I M+E + P T+ L++G+
Sbjct: 370 NILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGY 411
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 101/243 (41%), Gaps = 36/243 (14%)
Query: 401 DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL---VQNLSCEMVVS 457
D+LD+M +G + Y +++++ EAE L+++MR+ L + +C +
Sbjct: 209 DLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAAL 268
Query: 458 ERFSEVADKSASFTD---------------TSSLMDKSDLAESLIQEMR------EEAAL 496
+ ++ + S F D T +LM + +E + +E R + +
Sbjct: 269 CKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSET 328
Query: 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
++ N + + + +A I M E I+P + ++ LV+G M+ D +
Sbjct: 329 LSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSI 388
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNF------LQGGYFERVMEVIGYMKKQNMYVDKLM 610
G ++ ESGV A Y TLL + L+ Y R M +G NMY ++
Sbjct: 389 LGLMR---ESGV-APDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFP--NMYTCNIL 442
Query: 611 YKS 613
S
Sbjct: 443 LHS 445
>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
Length = 729
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 101/247 (40%), Gaps = 32/247 (12%)
Query: 373 EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
EH + S ++D L +G ++ A ++L ++ G D+ Y ++L ++ +
Sbjct: 330 EHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWE 389
Query: 433 EAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS--DLAESLIQEM 490
AE L+ EMV S+ D+ T +SL K D A ++++M
Sbjct: 390 HAEELMA-------------EMVCSDC---PPDEVTFNTVIASLCQKGLVDRAIKVVEQM 433
Query: 491 REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMY 550
E I NS I C + I DA+++ +Q +P + TF L+ G S++ +
Sbjct: 434 SENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRW 493
Query: 551 RD-----ITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMY 605
D + ++ D + + + T++ + Q G + +E + M +
Sbjct: 494 EDAEQLMVNMMHSDCPPDATT---------FNTVITSLCQKGLLLQAIETLKIMAENGCI 544
Query: 606 VDKLMYK 612
++ Y
Sbjct: 545 PNQSTYN 551
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/229 (18%), Positives = 94/229 (41%), Gaps = 20/229 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS- 444
+I+A+ G ++ A +IL D+ G D+ TY +L + + ++E E L +M +
Sbjct: 238 LINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNK 297
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
C ++ +V+ + L+D+ A ++ M E + I +S
Sbjct: 298 CAPDEVTFNTIVTSLCQQ------------GLVDR---AIKVVDHMSEHGCIPDIVTYSS 342
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
+ C + DA+++ R++ +P + ++ G S+E + L ++
Sbjct: 343 ILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMV--- 399
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ T++ + Q G +R ++V+ M + D + Y S
Sbjct: 400 -CSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNS 447
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 28/232 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI +L Q G ++ A +++ M G D TY S++ + +A LL +
Sbjct: 413 VIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNL---- 468
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
Q+ C+ + F+ + S +D+ + AE L+ M N+
Sbjct: 469 --QSYGCKPDIVT-FNTLLKGLCS-------VDRWEDAEQLMVNMMHSDCPPDATTFNTV 518
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I C+ ++ A++ + M E P T+ +V D + G + ++
Sbjct: 519 ITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVV----------DALLKAGKTQEALK 568
Query: 566 --SGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
SG+ + DL Y T++ N + G E ++++ M + D + Y+S
Sbjct: 569 LLSGMTNGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRS 620
>gi|255661202|gb|ACU25770.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 426
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 133/312 (42%), Gaps = 40/312 (12%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G + LSWL +E G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDDALSWL--QKMEEDRVPGDLVLYSNLIELSRKLCDYSRAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC-----EMVVSER-- 459
+ +G D Y S++ + K K+FREA AL+ +MR + ++ + M V +
Sbjct: 71 KRSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVENQKF 130
Query: 460 ------FSEVADKSASF--------TDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
FSE+ + SF D + + A+ L MR+ + N+
Sbjct: 131 LEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMVIYG-KTLEHEKANNLIQEMQDRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY--------KSEF 615
IE + Y T++ + + G +R + ++ + +D+++Y ++
Sbjct: 250 IEPNAIT-----YSTIISIWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVAYERAGL 304
Query: 616 LKHHKHLYRRLK 627
+ H K L + LK
Sbjct: 305 VAHAKRLLQELK 316
>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
Length = 385
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 28/200 (14%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K G+ E L + K + + +I ++G ++ A ++L+ M
Sbjct: 130 LIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 189
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D TY +L+ + K+ +A LL QM + L N+ +
Sbjct: 190 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNV-----------------VT 232
Query: 470 FTDTSSLMD----KSDLAES--LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
FT SLMD ++ L+++ ++ EMR ++ T+Y N+ + +C+ + +A K
Sbjct: 233 FT---SLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFM- 288
Query: 524 RMQEMKIRPTVETFYYLVYG 543
++EM P V +F ++ G
Sbjct: 289 -LEEMDCPPNVVSFNIMIRG 307
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 478 DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
+++ A L++EM + I+ + I FCK K DAL+++ ++ RP V T+
Sbjct: 68 ERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTY 127
Query: 538 YYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIG 597
L+ G ++ L+G R I+SG + Y +L+ F + G + M ++
Sbjct: 128 SCLIDGLCKEGRLKEAIDLFG---RMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLE 184
Query: 598 YMKKQNMYVDKLMYKS 613
M + D + Y +
Sbjct: 185 RMAETGSSPDVVTYTT 200
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 22/201 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-- 441
+ +I L + A+D+L++M +G D TY +L+T + K K +A + +Q+
Sbjct: 58 NSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVA 117
Query: 442 --------RKSCLVQNLSCEMVVSER---FSEVADKSASFTDTSSL---------MDKSD 481
SCL+ L E + E F + + +T + M K D
Sbjct: 118 RGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMD 177
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
A +L++ M E + + + + FCK + DA + +M + P V TF L+
Sbjct: 178 EAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLM 237
Query: 542 YGHSSLEMYRDITILWGDIKR 562
G D + G+++R
Sbjct: 238 DGLCRENRLSDAVHILGEMRR 258
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 27/234 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDST-TYKSLLTAYYKVKMFREAEALLKQMR 442
S +ID L + G L+ A D+ M +G M +T TY SL++ + ++ EA LL++M
Sbjct: 128 SCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMA 187
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
++ ++ + F ++A + D A L+ +M + +
Sbjct: 188 ETGSSPDVVTYTTLMNGFCKLA--------------RLDDAYDLLNQMTRKGLTPNVVTF 233
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH---SSLEMYRDITILWGD 559
S + C+ + DA+ I M+ PTV T+ ++ G+ + LE R + D
Sbjct: 234 TSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEMD 293
Query: 560 IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
N+ S + ++ + ME++ +++ D +MY +
Sbjct: 294 CPPNVVS---------FNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTT 338
>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1151
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 28/242 (11%)
Query: 327 EGKQELVLFRNGKLLHSNRAMAKLINGYKKH---GKNSELSWLLLSIKKEHHSFGESTLC 383
EGK L L + A LING+ K G ++ + + K + ++F L
Sbjct: 320 EGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYAL- 378
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
I L ++G LE A D+ +M + G D TY L+ YYKV+ +A LL +++K
Sbjct: 379 ---IHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKK 435
Query: 444 SCLVQN-LSCEMVVS--------ERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEA 494
L N C +V+ R +E+ + S+ +++ + + + L++E R E
Sbjct: 436 ENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEE 495
Query: 495 ALST------------IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A+ ++ N+ I FCK + + M ++P V T+ ++
Sbjct: 496 AIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIH 555
Query: 543 GH 544
G+
Sbjct: 556 GY 557
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 121/278 (43%), Gaps = 29/278 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR--- 442
+I+ L +LG + A ++ D + G +S TY +++ Y K EA L M+
Sbjct: 693 LINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVG 752
Query: 443 ------KSCLVQNLSCEMVVSER-----FSEVADKSASFTDTSSLMDK----SDLAES-- 485
C + + C+ +E+ V + AS ++L+D L E+
Sbjct: 753 VPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQ 812
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
L+++M + I + C I +A +++ MQ+ + P V T+ L++G++
Sbjct: 813 LVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYN 872
Query: 546 SLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
+ ++ L+ + + R I+ LA + ++ L+ G + + ++++ M + +
Sbjct: 873 RIGRRSEMFSLFDEMVARGIKPDDLA-----WSVMVDAHLKEGNWIKALKLVDDMLSEGV 927
Query: 605 YVDKLMYK--SEFLKHHKHLYRRLKVSNARTEAQSKRL 640
V K +Y + L H +L LKV + E Q +L
Sbjct: 928 NVCKNLYTILIDALCKHNNLSEVLKVLD-EVEKQGSKL 964
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 117/289 (40%), Gaps = 41/289 (14%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+ Y+K G +E + L K G + C+ + L++ +E + M A
Sbjct: 169 LIDIYRKKGFLNEAVSVFLGAKTNEFIVGLAC-CNSLSKDLLKGNRVELFWKVYKGMLGA 227
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
P D TY +L+ AY +V E + +L M + + NL VV D +
Sbjct: 228 IVP-DVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEA 286
Query: 470 FTDTSSLMDKSDLAESLI------------QEMREEAALSTIYKLN---------SSIYF 508
S+ +K L ++ I + ++ L +Y + + I
Sbjct: 287 LELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALING 346
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL-------EMYRDITILWGDIK 561
F K IG A ++ M KI+ T+Y L++G + +++ ++T++ IK
Sbjct: 347 FVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMM--GIK 404
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLM 610
+I++ Y L+ + + E+ E++ +KK+N+ + M
Sbjct: 405 PDIQT---------YNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYM 444
>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 92/449 (20%), Positives = 185/449 (41%), Gaps = 66/449 (14%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIIL-------AQIHEMNCQ 227
P+ FN+++ C R G + +++ELMSQ VV DA + ++ +I E
Sbjct: 265 PNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRL 324
Query: 228 RDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPK 287
R+E++ K D ++ Y +L++ F+ + +LI +M R PN
Sbjct: 325 REEMENLKLSPDVVT----------YNTLINGCFEHGSSEEGFKLIEEMEG-RGMKPN-S 372
Query: 288 LRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAM 347
+ + + + G M E+ ++ KME L
Sbjct: 373 VTYNVMVKWFVKKGK-----------MDEV--DKTVRKME---------ESGCLPDIVTY 410
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
LI+ + K GK E L+ + ++ + TL + ++ AL + L+ AHD+L
Sbjct: 411 NTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTL-NTMLRALCRERKLDEAHDLLCSAR 469
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G+ +D +Y +L+ Y+K + +A L +M++ ++ ++ ++ +
Sbjct: 470 RRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSII-------TYNSMIAGL 522
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
T+ +DK D E+ E + N+ I+ +C+ + A + + +M E
Sbjct: 523 CQMGKTNQAIDKLD-------ELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVE 575
Query: 528 MKIRPTVETFYYLVYG---HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
+P V T L+ G LE + W ++++ AVS Y T++L+
Sbjct: 576 KNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVD----AVS---YNTIILSLC 628
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ F +++ M+++ + D Y +
Sbjct: 629 KEKRFGEAFDLLEEMEEKKLGPDCYTYNA 657
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/389 (21%), Positives = 151/389 (38%), Gaps = 60/389 (15%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
+ PD + +N +++ C GSS +G ++E M G+ ++ + ++ + + DE+
Sbjct: 333 LSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVD 392
Query: 233 KF-------KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPN 285
K C D ++ Y +L+S H K +D A L+ +M R
Sbjct: 393 KTVRKMEESGCLPDIVT----------YNTLISWHCKVGKMDEAFRLMDEMGR------- 435
Query: 286 PKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNR 345
L+ D + L M L ++ L E L R
Sbjct: 436 KGLKMD----------------DVTLNTMLRALCRERKLD-EAHDLLCSARRRGYFVDEV 478
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
+ LI GY KH K S+ + L KE + +I L Q+G A D LD+
Sbjct: 479 SYGTLIIGYFKHEKASQ-ALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDE 537
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVA 464
+ +G D TY +++ Y + +A +M K+ ++C ++ E
Sbjct: 538 LLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKE-- 595
Query: 465 DKSASFTDTSSLMDKS-DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
+++K+ L + I + ++ A+S N+ I CK K G+A +
Sbjct: 596 ----------GMLEKALKLFNTWISKGKDVDAVS----YNTIILSLCKEKRFGEAFDLLE 641
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
M+E K+ P T+ ++ G + +D
Sbjct: 642 EMEEKKLGPDCYTYNAILGGLTDAGRMKD 670
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 48/257 (18%), Positives = 104/257 (40%), Gaps = 25/257 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++D L + G L A D+L DM+ G + TT+ L+ ++ +EA +++ M ++
Sbjct: 238 ILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNS 297
Query: 446 LVQNLSCEMVVSERF---SEVADK------------SASFTDTSSLMD------KSDLAE 484
+V + V+ F +A+ S ++L++ S+
Sbjct: 298 VVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGF 357
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
LI+EM N + +F K + + K R+M+E P + T+ L+ H
Sbjct: 358 KLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWH 417
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
+ + L ++ R L + T+L + + +++ +++
Sbjct: 418 CKVGKMDEAFRLMDEMGRK----GLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGY 473
Query: 605 YVDKLMYKSEFLKHHKH 621
+VD++ Y + + + KH
Sbjct: 474 FVDEVSYGTLIIGYFKH 490
>gi|255661208|gb|ACU25773.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 426
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 131/297 (44%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G + LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDDALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ AG D Y S++ + K K+FREA +L+ +MR++ +V + L V +++F
Sbjct: 71 KRAGIKPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVENQKF 130
Query: 461 SEVADKSASFTDTSSLMDKS------------DL---AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + D+ A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYG-KTLEHEKANNLIQEMHNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D ++Y++ + + +
Sbjct: 250 IEPNAIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYER 301
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 100/231 (43%), Gaps = 27/231 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F +A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSLMD---KSDL------------------AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K DL A SLI EMRE + ++ + + +
Sbjct: 68 SRLKRAGIKPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
+ +AL ++ M+E+K + T ++ + L+M ++ + W K IE V++
Sbjct: 128 QKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHL 622
Y TLL + F + + M+++++ + + Y + + + K L
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTL 233
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1164
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 100/468 (21%), Positives = 185/468 (39%), Gaps = 47/468 (10%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKK- 233
PD + ++ V++ RFG K ++E M Q G+ ++++ + + C+ E ++
Sbjct: 702 PDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEA 761
Query: 234 FKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQ 293
F I Q P Y +L+ K DI AA + +M+ R+ P+ L A
Sbjct: 762 FSEMIGQGILPDT----IVYTTLVDGFCKRGDIRAASKFFYEMHS-RDITPD-VLTYTAI 815
Query: 294 KPYLISIGSPNLRCGLKLQIMPELLEKDSIL---KMEGKQELVLFRNGKLLHSNRAMA-- 348
IG L +++ LE D I M G + ++ +H++ A
Sbjct: 816 ISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGC 875
Query: 349 --------KLINGYKKHG---KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLE 397
LI+G K G +EL + I + + F ++ +++ L + G +E
Sbjct: 876 SPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS----IVNGLCKSGNIE 931
Query: 398 AAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVS 457
A ++ + E AG D+ TY +L+ AY K +A+ +L +M L + V+
Sbjct: 932 EAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLM 991
Query: 458 ERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGD 517
F L + E L+ M + N + +C +
Sbjct: 992 NGFC--------------LHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKA 1037
Query: 518 ALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYE 577
A IY+ M + P +T+ LV GH + ++ L+ ++K +VS Y
Sbjct: 1038 ATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMK----GKGFSVSVSTYS 1093
Query: 578 TLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRR 625
L+ F + F E+ M++ + DK ++ +F K+ +R
Sbjct: 1094 VLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIF--DFFSDTKYKGKR 1139
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 25/190 (13%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI + QLG + AH +L MEL G+ D +Y +++ Y + + L+++M++
Sbjct: 675 VIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKG 734
Query: 446 LVQN---------LSCEMV----VSERFSEVADKSASFTDT---SSLMD----KSDL--A 483
L N L C + E FSE+ + DT ++L+D + D+ A
Sbjct: 735 LKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGI-LPDTIVYTTLVDGFCKRGDIRAA 793
Query: 484 ESLIQEMREEAALSTIYKLNSSIYFFCK-GKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
EM + + I FC+ G M+ +A K++ M + P + TF L+
Sbjct: 794 SKFFYEMHSRDITPDVLTYTAIISGFCQIGDMV-EAGKLFHEMLCRGLEPDIITFTELMN 852
Query: 543 GHSSLEMYRD 552
G+ +D
Sbjct: 853 GYCKAGHIKD 862
>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
Length = 715
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 120/269 (44%), Gaps = 35/269 (13%)
Query: 392 QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNL 450
++G + A ++ D+M + G DS +YK + AY ++ + + LK M R+ +V N
Sbjct: 208 EMGLVGYAENVFDEMRVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNA 267
Query: 451 SCEMVVS---------------ERFSEVADKSASFTDTS---SLMDKSDLAES--LIQEM 490
+C +++S +++ E+ K TS L + + ++ +++EM
Sbjct: 268 TCTLMISTFCEKGFASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEM 327
Query: 491 REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM-QEMKIRPTVETFYYLVYGHSSLEM 549
++ +Y + I CK A +++ ++ + +P V T+ +++G+ +
Sbjct: 328 VKKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDK 387
Query: 550 YRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ------- 602
+L +K E G++ ++ Y L+ + G FE+ E++ M K+
Sbjct: 388 LNRAEMLLSRMK---EQGLVPNTKT-YTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIF 443
Query: 603 --NMYVDKLMYKSEFLKHHKHLYRRLKVS 629
N ++D L K FL+ K L + ++
Sbjct: 444 TYNAFIDSLCKKGRFLEACKLLKKGFRLG 472
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 84/197 (42%), Gaps = 19/197 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+I+GY K K + +LLS KE + + +ID + G E A++++D M
Sbjct: 378 MIHGYCKEDKLNRAE-MLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKE 436
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + TY + + + K F EA LLK+ R AD
Sbjct: 437 GFSANIFTYNAFIDSLCKKGRFLEACKLLKK----------------GFRLGLQADTVTY 480
Query: 470 FTDTSSLMDKSDLAESLI--QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
S L ++D E+L+ +M + ++ N+ I F + + + ++ K++
Sbjct: 481 TILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVG 540
Query: 528 MKIRPTVETFYYLVYGH 544
+ + PT ET+ ++ G+
Sbjct: 541 LGLVPTKETYTSMICGY 557
>gi|255661178|gb|ACU25758.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 352
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 130/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSXKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + ++ N L V +++F
Sbjct: 71 KRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYER 301
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 105/251 (41%), Gaps = 36/251 (14%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + ++V+ E++ K ++
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQD----RVPGDLVLYSNLIELSXKLCDYSKA 63
Query: 474 SSLMDK-------SDL------------------AESLIQEMREEAALSTIYKLNSSIYF 508
S+ + DL A SLI EMR + ++ +
Sbjct: 64 ISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTM 123
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESG 567
+ + K +AL ++ M+E+K + T ++ + L M ++ + WG K IE
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPN 183
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLK 627
V++ Y TLL + F + + M+++N+ + + Y S + + K L K
Sbjct: 184 VVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-K 237
Query: 628 VSNARTEAQSK 638
+N E Q++
Sbjct: 238 ANNLIQEMQNR 248
>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 139/336 (41%), Gaps = 34/336 (10%)
Query: 298 ISIGSPNLRCGLKLQIMPELLEKDSILK---MEGKQELVLFRNGKLLH-----SNRAMAK 349
I+ G L LK P+ + ++++K ++G+ + L + KLL + + A
Sbjct: 110 ITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYAT 169
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LING K G L I + + + +IDA+ + + A+ + +M +
Sbjct: 170 LINGVCKIGDTRAAIKFLRKIDGRLTK-PDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVK 228
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM----------RKSCLVQNLSCEMVVSER 459
G D TY +L+ + V +EA LL +M + LV L E V E
Sbjct: 229 GISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEA 288
Query: 460 FSEVAD--KSASFTDT---SSLMDKSDL------AESLIQEMREEAALSTIYKLNSSIYF 508
S +A K+ D S+LMD L A+ + M ++ I
Sbjct: 289 KSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILING 348
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
FCK KM+ +AL +++ M + + P + T+ L+ G L I+ +W I + G
Sbjct: 349 FCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDG---LCKSGRISYVWDLIDEMRDRGQ 405
Query: 569 LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
A Y +L+ + G+ +R + + MK Q +
Sbjct: 406 PA-DVITYSSLIDGLCKNGHLDRAIALFNKMKDQEI 440
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S ++D + ++ A + + M L G D TY L+ + K KM EA L K+M +
Sbjct: 308 STLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQ 367
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+V + +S + D S + D LI EMR+ + + +
Sbjct: 368 KNMVPGIV-------TYSSLIDGLCKSGRISYVWD-------LIDEMRDRGQPADVITYS 413
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
S I CK + A+ ++ +M++ +IRP + TF L+ G
Sbjct: 414 SLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDG 453
>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 841
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 119/281 (42%), Gaps = 38/281 (13%)
Query: 286 PKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKM------------------- 326
PK+ ++ +P I++ + LK QI L D ++ M
Sbjct: 252 PKILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKV 311
Query: 327 -EGKQELVLFR--NGKLLHSNRAMAK-LINGYKKHGKNSELSWLLLSIKKEHHSFGESTL 382
E K L L R +GKL+ + M +I+G K K+ ++ L S K F +
Sbjct: 312 GETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKD-KHVNDAFDLYSEKVSKRIFPDVFT 370
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
+ +I +G L+ A D+ + M D T+ L+ + K +EA+ +L M
Sbjct: 371 YNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMM 430
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
K Q++ ++V +S D L+++ + AES+ M + +
Sbjct: 431 K----QSIKPDVVTY----------SSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSY 476
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
N I FCK KM+ +A+K+++ M +I P V T+ L+ G
Sbjct: 477 NIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDG 517
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 100/264 (37%), Gaps = 21/264 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L++G+ K G E +L + K+ T S ++D + + A I + M
Sbjct: 409 LVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTY-SSLMDGYCLVNEVNKAESIFNTMSHR 467
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + +Y ++ + K+KM EA L K+M + F +V S S
Sbjct: 468 GVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHK-------------QIFPDVITYS-S 513
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D + A L+ EM I NS + CK + A+ + +++
Sbjct: 514 LIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQG 573
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGY 588
IRP + T+ LV G D ++ D + + V A Y ++ F G
Sbjct: 574 IRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYA-----YTVMIQGFCDKGL 628
Query: 589 FERVMEVIGYMKKQNMYVDKLMYK 612
F+ + ++ M++ D Y+
Sbjct: 629 FDEALALLSKMEENGCIPDAKTYE 652
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 61/328 (18%), Positives = 138/328 (42%), Gaps = 62/328 (18%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
I PD F++++ + G+ + ++++ +M + + D ++ + + + C +E+
Sbjct: 399 IIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPD---VVTYSSLMDGYCLVNEVN 455
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDA 292
K + + +S Q Y +++ K +D A +L +M+ +++ P+
Sbjct: 456 KAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMH-HKQIFPDV-----I 509
Query: 293 QKPYLISIGSPNLRCGLKLQIM---------PELLEKDSILKMEGKQELVLFRNGKLLHS 343
LI + R L+++ P+++ +SIL K+ H
Sbjct: 510 TYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKH----------HV 559
Query: 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
++A+ L+ K G +++ + +K L Q G LE A +
Sbjct: 560 DKAIT-LLTKLKGQGIRPDMNTYTILVK-----------------GLCQSGKLEDARKVF 601
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLSCEMVVSERFSE 462
+D+ + G+ +D Y ++ + +F EA ALL +M ++ C+ + E+++ F +
Sbjct: 602 EDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEK 661
Query: 463 VADKSASFTDTSSLMDKSDLAESLIQEM 490
D++D+AE L++EM
Sbjct: 662 ---------------DENDMAEKLLREM 674
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 81/194 (41%), Gaps = 19/194 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHS--FGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ING+ K E L K+ HH F + S +ID L + G + A +++D+M
Sbjct: 479 MINGFCKIKMVDEAMKLF---KEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMH 535
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY S+L A K +A LL +++ + +++ ++ + + S
Sbjct: 536 YRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQ----S 591
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
D A + +++ + +Y I FC + +AL + +M+E
Sbjct: 592 GKLED----------ARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEE 641
Query: 528 MKIRPTVETFYYLV 541
P +T+ ++
Sbjct: 642 NGCIPDAKTYEIII 655
>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
Length = 628
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 92/421 (21%), Positives = 166/421 (39%), Gaps = 49/421 (11%)
Query: 165 EKSNGAELIK----PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSII-ILA 219
E +G E+I+ PD + +N + + G KG ++E M + G+ D + I++
Sbjct: 171 ECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIIS 230
Query: 220 QIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNR- 278
+ + N D + FK +++ P + Y ++L S + D +D E + M
Sbjct: 231 GLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNL-SRANRLDTVDEVLEHMQAMKAG 289
Query: 279 -----YREPLPNPKLRQDAQKPY-------LISIGS-PNLRCGLKLQIMPELLEKDSILK 325
Y L + + P +I GS PNL L + + L K +
Sbjct: 290 CVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNL---LSYNFVIDGLCKSGNVD 346
Query: 326 MEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD 385
K + +G LI+G+ K G+ S+ LL+ +K ++ + +
Sbjct: 347 DAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNT 406
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KS 444
+ID + G L+ A +L +M+ G + TY +L+ Y K M+ EAE+L +M K
Sbjct: 407 LIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKG 466
Query: 445 CLVQNLSCEMVVSERFSEVADKSAS-----------------------FTDTSSLMDKSD 481
C ++ V+S FS+ S + D + ++
Sbjct: 467 CFPDIITYNTVLSA-FSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTE 525
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI-GDALKIYRRMQEMKIRPTVETFYYL 540
+L+QEM Y N I + + + AL +Y++M + P+ F L
Sbjct: 526 QGLTLLQEMTARGWSCDSYTYNVLIAKLAETEEVPSKALAVYQQMLDQDCVPSASIFNSL 585
Query: 541 V 541
V
Sbjct: 586 V 586
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 100/231 (43%), Gaps = 22/231 (9%)
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSC 445
I L + G L+ ++L++M+ G P D T+ S+++ K +A + K M + C
Sbjct: 194 ISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGC 253
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR--EEAALSTIYKLN 503
+ +L+ +++ D S ++ D + +++ M+ + + +Y N
Sbjct: 254 VPDSLTYSIML---------------DNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHN 298
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ I C+ A I M E P + ++ +++ G L ++ W ++
Sbjct: 299 AFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDG---LCKSGNVDDAWKLSRKM 355
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYV-DKLMYKS 613
++SG + TL+ F + G + +++ MK +N+ V D + Y +
Sbjct: 356 LDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNT 406
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 113/273 (41%), Gaps = 23/273 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LINGY G N + LL + KE+ + ++++ + G LE+A +M
Sbjct: 449 LINGYLTKG-NVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVEC 507
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + +Y +L+ + K A +LLK+M + N+ V S K
Sbjct: 508 GLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLS----KENR 563
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
F++ + DK M E+ L + + I C+ A KI+ M++ K
Sbjct: 564 FSEAEKICDK----------MVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRK 613
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
P + T+ L+YG E D + +R E G + D Y TL+ + G F
Sbjct: 614 CLPNLYTYSSLIYGLCQ-EGKAD------EAERMSEIGC-EPTLDTYSTLVSGLCRKGRF 665
Query: 590 ERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHL 622
+++ MK++ D+ +Y S + H K+L
Sbjct: 666 YEAEQLVKDMKERGFCPDREIYYSLLIAHCKNL 698
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 103/252 (40%), Gaps = 27/252 (10%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ ++ L + +E A ++ M +G T+ +L+ K REAE +L Q+
Sbjct: 166 CNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIF 225
Query: 443 K----------------SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD------KS 480
+ C +NL V +R + S T S+L++ +
Sbjct: 226 QYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVT-YSTLINGLCNEGRV 284
Query: 481 DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
D A +++EM E+ T+Y I C + +A+++ RM++ RP V+T+ L
Sbjct: 285 DEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTAL 344
Query: 541 VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
+ G S L + + G + ++ G L + Y L+ GG F +++ +M+
Sbjct: 345 ISGLSRL---GKLEVAIGLYHKMLKEG-LVPNTVTYNALINELCVGGRFSTALKIFHWME 400
Query: 601 KQNMYVDKLMYK 612
+ Y
Sbjct: 401 GHGSLANTQTYN 412
>gi|297805706|ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 680
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 127/297 (42%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G +S LSWL ++ G+ L S++I+ +L A I +
Sbjct: 196 STLITSFGKEGMFDSALSWL--QKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRL 253
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y S++ Y K K+F+EA L+K+M ++ + N L V + +F
Sbjct: 254 KRSGITPDLVAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKF 313
Query: 461 SEVADKSAS---------------FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
E A D +D A+ L +R+ + N+
Sbjct: 314 LEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTI 373
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMYRDITILWGDIKRN 563
+ + + ++ G+A+ ++R MQ I V T+ + +YG ++E + ++ R
Sbjct: 374 LRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYG-KTMEHEKATNLVQEMQSRG 432
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 433 IEPNAIT-----YSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYER 484
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 59/302 (19%), Positives = 124/302 (41%), Gaps = 40/302 (13%)
Query: 363 LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422
L W+ K F + + +V+ A Q G AH + D+M D TY +L+
Sbjct: 144 LDWVHEEAKYTPSVFAYNVVLRNVLRAK-QFGI---AHGLFDEMRQRALAPDRYTYSTLI 199
Query: 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDK--- 479
T++ K MF A + L++M + +S ++V+ E++ + ++ S+ +
Sbjct: 200 TSFGKEGMFDSALSWLQKMEQD----RVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKR 255
Query: 480 ----SDL------------------AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGD 517
DL A LI+EM E ++ + + + +
Sbjct: 256 SGITPDLVAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLE 315
Query: 518 ALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDIT-ILWGDIKRNIESGVLAVSRDLY 576
AL ++ M+E+ + T ++ + L+M ++ + W K +IE V++ Y
Sbjct: 316 ALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVS-----Y 370
Query: 577 ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQ 636
T+L + + F + + M+++++ + + Y + +K + K +N E Q
Sbjct: 371 NTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNT-MIKIYGKTMEHEKATNLVQEMQ 429
Query: 637 SK 638
S+
Sbjct: 430 SR 431
>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 724
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 140/311 (45%), Gaps = 36/311 (11%)
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL 393
L NG L ++ M ++ + + G+ +E +++ ++ + S T+ + V++ I+
Sbjct: 160 LIANGNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQNQGLSPSSITM-NCVLEIAIES 218
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSC 452
G ++ A ++ D+M + G DS+++K ++ ++ +EA+ L M ++ + N +C
Sbjct: 219 GLIDYAENVFDEMSVRGVCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATC 278
Query: 453 EMVVSE------------RFSEVADKS--ASFTDTSSLMD----KSDLAES--LIQEMRE 492
+++S F ++ D + + +SL+D K + ++ +++EM
Sbjct: 279 TLILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVR 338
Query: 493 EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI-RPTVETFYYLVYGHSSLEMYR 551
+Y + I CK A +++ ++ I +P V T+ ++ G+ +
Sbjct: 339 NGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLN 398
Query: 552 DITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ--------- 602
+L+ +K E G+ + + Y TL+ + G F+R E++ M +
Sbjct: 399 RAEMLFSRMK---EQGLFP-NVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTY 454
Query: 603 NMYVDKLMYKS 613
N +D L KS
Sbjct: 455 NAVIDSLCKKS 465
>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
Length = 607
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 91/442 (20%), Positives = 168/442 (38%), Gaps = 54/442 (12%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTG--VVADAHSIIILAQIHEMNCQRDE 230
+KPD + + ++L+ + G +++ MS G V AD I+IL + + C+
Sbjct: 162 VKPDIVTYGILLNRLCKAGLVGDALKVLDRMSSPGSDVCAD---IVILNTVVDGLCKIGR 218
Query: 231 LKKFKCYIDQLSTPF--AHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKL 288
L+ ++D+ Y L + DID A +++ M + E + +
Sbjct: 219 LQDAIVFVDERMRQVHGCAPNTVTYNCLADACCRVGDIDMACQIVERMEK--EGVTPNVI 276
Query: 289 RQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMA 348
+ L +G R G L E ++ + L+ G LH N
Sbjct: 277 TMNTIVGGLCRVG----RVGAALDFFRE--KRTTWLEARGNAVTYSTLVSAFLHCN---- 326
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
N L+ L + ++ + +I L Q G L A +I M+
Sbjct: 327 -----------NVALAMELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDACNIAASMKK 375
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
AG +D Y L+ + + K EA L ++M+ + L ++ + + D SA
Sbjct: 376 AGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLCKAGDFSA 435
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ L+ M ++ ++ + ++ +CK +ALKI+R M E
Sbjct: 436 --------------VDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEA 481
Query: 529 KIRPTVETFYYLV-YGHSSLEMYRDITILWGDIKR--NIESGVLAVSRDLYETLLLNFLQ 585
+I+P + L+ + S E+ D+ I D R N+ + V Y LL
Sbjct: 482 RIQPNTVIYNTLIDFLCKSREV--DVAIKLFDEMRENNVPANVTT-----YNALLKGLQD 534
Query: 586 GGYFERVMEVIGYMKKQNMYVD 607
E+ E++ MK++ D
Sbjct: 535 KNMPEKAFELMDQMKEERCTPD 556
>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 115/267 (43%), Gaps = 28/267 (10%)
Query: 370 IKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVK 429
I K++ + L S +I L +LG + A + + L GH ++ ++++AY +
Sbjct: 168 IWKQNGRIAKGKLVSTMIGTLGRLGEINHALRLFESARLEGHGNTVYSFSAMISAYGRNG 227
Query: 430 MFREAEALLKQMRKSCLVQNL-----------SCEM---VVSERFSE------VADKSAS 469
F +A L + MR + NL E+ VV + F E V D+
Sbjct: 228 HFSDAVDLFRSMRSWGVYPNLISYNSLIDAGAKGEVDFDVVVKFFDEMLAEGIVPDRLTY 287
Query: 470 FTDTSSLMDKS--DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ S K + A+ L+ EM ++ + + N+ + CKG I A ++ M
Sbjct: 288 NSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSS 347
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQG 586
++ PTV T+ ++ G + + D L+ ++K R+I +V R Y T++ + +
Sbjct: 348 RRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSI-----SVDRVSYNTMVGIYAKL 402
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKS 613
G F+ + M+ M D + Y +
Sbjct: 403 GRFDEAIGQCKEMESCGMKRDVVTYNA 429
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 136/331 (41%), Gaps = 78/331 (23%)
Query: 332 LVLFRNGKL-LHSNR--AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVI- 387
L LF + +L H N + + +I+ Y ++G S+ L S++ S+G + ++I
Sbjct: 198 LRLFESARLEGHGNTVYSFSAMISAYGRNGHFSDAVDLFRSMR----SWG---VYPNLIS 250
Query: 388 -DALIQLGFL-EAAHDIL----DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM 441
++LI G E D++ D+M G D TY SLL+ M+ A+ LL +M
Sbjct: 251 YNSLIDAGAKGEVDFDVVVKFFDEMLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEM 310
Query: 442 RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYK 501
+ +V++ A ++ DT + DLA +++EM T+
Sbjct: 311 DQKGIVRD--------------AFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVT 356
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT---------------------------- 533
++ I K ++ DAL +Y +EMK+R
Sbjct: 357 YSTMIDGCAKANLLEDALNLY---EEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCK 413
Query: 534 ----------VETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLN 582
V T+ L+ G+ MY ++ L+ ++K NI L Y T++
Sbjct: 414 EMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLT-----YSTMIDV 468
Query: 583 FLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ +GG F+ M+V KK + VD + Y S
Sbjct: 469 YTKGGMFQEAMDVYKDFKKAQLEVDVVFYTS 499
>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63080, mitochondrial; Flags: Precursor
gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 614
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 123/285 (43%), Gaps = 26/285 (9%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ING K G+ +L+ LL+ ++ + + S VID+L + ++ A ++ +M+
Sbjct: 209 GAVINGLCKRGE-PDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMD 267
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC------------EMV 455
G D TY SL++ + +A LL M + + N+ +++
Sbjct: 268 NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLI 327
Query: 456 VSER-FSEVADKSA--------SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506
+E+ F E+ +S S + + D+ D A+ + M + L + N+ I
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566
FCK K + D ++++R M + T+ L++G + +++ K+ +
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVF---KQMVSD 444
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
GV + Y TLL + G E+ M V Y++K M D Y
Sbjct: 445 GVHP-NIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTY 488
>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g19290-like [Cucumis
sativus]
Length = 885
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/411 (20%), Positives = 159/411 (38%), Gaps = 52/411 (12%)
Query: 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKK 233
+PD +N+V++A G S H++ LM + G SI I + C+ ++
Sbjct: 289 EPDVYSYNIVINANCLKGQSSYALHLLNLMIENGC---KPSIATFCTIIDAFCKEGNVEL 345
Query: 234 FKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMN---------------- 277
+ Y D++ Y ++S + K DI A L +M
Sbjct: 346 ARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVA 405
Query: 278 ---RYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVL 334
RY + +L +D L+ S C + + + D +K+ L
Sbjct: 406 GHYRYGKEEDGNRLLRDLSVSGLLHDSS---LCDVTVAGLCWAGRYDEAMKLLEN----L 458
Query: 335 FRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG 394
G + S A +I Y G E ++ I + S+ CS ++ +L++ G
Sbjct: 459 LEKG-IPPSVVAFNSIIAAYGNAGL-EERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKG 516
Query: 395 FLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK----------S 444
L+ A L DM G P+ + + LL Y+++ AE+L +M+ +
Sbjct: 517 SLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFA 576
Query: 445 CLVQNLSCEMVVSERFSEVADK------SASFTDTSSL-----MDKSDLAESLIQEMREE 493
+ L ++++ + +D +F S + + K + A L++EM +
Sbjct: 577 AFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKR 636
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
L I+ +N I CK + A++ + M M + P + T+ L+ G+
Sbjct: 637 GLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGY 687
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 92/216 (42%), Gaps = 18/216 (8%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
+N A L++GY + G ++ L + K F ++ + I+ L G + A+D+
Sbjct: 536 TNMAFTVLLDGYFRIGA-VNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDV 594
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-SCEMVVSERFS 461
DM G ++ Y SL+ + KV EA L+++M K L+ ++ + M++
Sbjct: 595 FSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCK 654
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
+ + LA +M I N+ I +CK +G A +
Sbjct: 655 Q---------------GRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDL 699
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSL-EMYRDITIL 556
+M + P + T+ ++G+ ++ ++ R + IL
Sbjct: 700 MMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMIL 735
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 27/176 (15%)
Query: 380 STLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK 439
+T C+ +IDA + G +E A D++E G ++ Y +++ Y K + +A L +
Sbjct: 328 ATFCT-IIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFE 386
Query: 440 QMR-KSCLVQNLSCEMVVSE--RFSEVADKSASFTD--TSSLMDKSDLAESLIQEMREEA 494
+MR K + ++ +V+ R+ + D + D S L+ S L + + +
Sbjct: 387 EMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGL---- 442
Query: 495 ALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV--YGHSSLE 548
C +A+K+ + E I P+V F ++ YG++ LE
Sbjct: 443 ---------------CWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLE 483
>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 86/180 (47%), Gaps = 19/180 (10%)
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK----VKMFREAEALLKQMR 442
I+ L + G L A D ++DM+ G + TY +L+ Y K KM++ AEA +K+M
Sbjct: 207 INGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYK-AEAFMKEM- 264
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
+ N C V+ F+ + D + ++ A+ +EM+++ I
Sbjct: 265 ----LANKICPNEVT--FNTLIDGFCKDENVAA-------AKKAFEEMQKQGLKPNIVTY 311
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
NS I C + +A+ ++ +M + ++P + T+ L+ G +M ++ T ++ D+ +
Sbjct: 312 NSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSK 371
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 21/182 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I+ L G LE A D+ D M G + TY +L+ + K KM +EA + + K
Sbjct: 312 NSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSK 371
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD-------------------KSDL-- 482
LV N+ + + + + F+ SS++D K DL
Sbjct: 372 QELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQA 431
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A+ L+ EM + + N I CK +A K+ M + ++P T+ L+
Sbjct: 432 AKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMD 491
Query: 543 GH 544
G+
Sbjct: 492 GY 493
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 105/248 (42%), Gaps = 27/248 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+ L + G A +LD+M G D+ TY LL + +AE + +M
Sbjct: 330 IINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQG 389
Query: 446 LVQNL-------------SCEMVVSERFSEVADKSASFTDT------SSLMDKSDLAESL 486
+V +L C + F ++ + + + ++E+L
Sbjct: 390 VVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEAL 449
Query: 487 I--QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
EM E+ + + N+ + CK KM+ +A +++ M E + P TF L+ G+
Sbjct: 450 KVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGY 509
Query: 545 S-SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
S M + +T+ I+RN++ V+ Y TL+ F +G E+V E+ M +
Sbjct: 510 SKDGNMNKAVTLFEMMIQRNLKPDVVT-----YNTLIDGFCKGSEMEKVNELWNDMISRR 564
Query: 604 MYVDKLMY 611
+Y + + Y
Sbjct: 565 IYPNHISY 572
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/229 (18%), Positives = 96/229 (41%), Gaps = 20/229 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I + G + A + D+M G +D TY ++L K KM EA+ L +M +
Sbjct: 435 LIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERG 494
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ + + +S+ + M+K A +L + M + + N+
Sbjct: 495 VFPDFYTFTTLINGYSKDGN-----------MNK---AVTLFEMMIQRNLKPDVVTYNTL 540
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNI 564
I FCKG + +++ M +I P ++ L+ G+ ++ + LW + +++
Sbjct: 541 IDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGF 600
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ ++ + T++ + + G + E + M + + D + Y +
Sbjct: 601 EATIITCN-----TIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNT 644
>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 917
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/411 (20%), Positives = 161/411 (39%), Gaps = 52/411 (12%)
Query: 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKK 233
+PD +N+V++A G S H++ LM + G SI I + C+ ++
Sbjct: 320 EPDVYSYNIVINANCLKGQSSYALHLLNLMIENGC---KPSIATFCTIIDAFCKEGNVEL 376
Query: 234 FKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMN---------------- 277
+ Y D++ Y ++S + K DI A L +M
Sbjct: 377 ARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVA 436
Query: 278 ---RYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVL 334
RY + +L +D L+ S C + + + D +K+ E +L
Sbjct: 437 GHYRYGKEEDGNRLLRDLSVSGLLHDSS---LCDVTVAGLCWAGRYDEAMKL---LENLL 490
Query: 335 FRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG 394
+ + S A +I Y G E ++ I + S+ CS ++ +L++ G
Sbjct: 491 GKG--IPPSVVAFNSIIAAYGNAGL-EERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKG 547
Query: 395 FLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK----------S 444
L+ A L DM G P+ + + LL Y+++ AE+L +M+ +
Sbjct: 548 SLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFA 607
Query: 445 CLVQNLSCEMVVSERFSEVADK------SASFTDTSSL-----MDKSDLAESLIQEMREE 493
+ L ++++ + +D +F S + + K + A L++EM +
Sbjct: 608 AFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKR 667
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
L I+ +N I CK + A++ + M M + P + T+ L+ G+
Sbjct: 668 GLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGY 718
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 92/216 (42%), Gaps = 18/216 (8%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
+N A L++GY + G ++ L + K F ++ + I+ L G + A+D+
Sbjct: 567 TNMAFTVLLDGYFRIGA-VNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDV 625
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-SCEMVVSERFS 461
DM G ++ Y SL+ + KV EA L+++M K L+ ++ + M++
Sbjct: 626 FSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCK 685
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
+ + LA +M I N+ I +CK +G A +
Sbjct: 686 Q---------------GRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDL 730
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSL-EMYRDITIL 556
+M + P + T+ ++G+ ++ ++ R + IL
Sbjct: 731 MMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMIL 766
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 27/176 (15%)
Query: 380 STLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK 439
+T C+ +IDA + G +E A D++E G ++ Y +++ Y K + +A L +
Sbjct: 359 ATFCT-IIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFE 417
Query: 440 QMR-KSCLVQNLSCEMVVSE--RFSEVADKSASFTD--TSSLMDKSDLAESLIQEMREEA 494
+MR K + ++ +V+ R+ + D + D S L+ S L + + +
Sbjct: 418 EMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGL---- 473
Query: 495 ALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV--YGHSSLE 548
C +A+K+ + I P+V F ++ YG++ LE
Sbjct: 474 ---------------CWAGRYDEAMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLE 514
>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 128/317 (40%), Gaps = 36/317 (11%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+ING K G+ + + LL +++ T S +ID+ + + A DI M++
Sbjct: 209 IINGLCKIGETAAAAGLLKKMEEAGCQPNVVTY-STIIDSHRKDRRVNEALDIFSYMKVK 267
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK----------SCLVQNLSCEMVVSE- 458
G D TY SL+ ++EA ALL +MR + LV + E VSE
Sbjct: 268 GISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEA 327
Query: 459 -----RFSEVADKSASFTDTS-----SLMDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
+E+ + T +S SL + A L M + ++ N I
Sbjct: 328 QGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILING 387
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
+CK K I +A +++ M + P ++ L++G L R+ L+ ++ N
Sbjct: 388 YCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPN 447
Query: 569 LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ---------NMYVDKLMYKSEFLKHH 619
L Y LL F + GYF + + M+ N+ +D M KS L+
Sbjct: 448 LFT----YSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDA-MCKSGNLRDA 502
Query: 620 KHLYRRLKVSNARTEAQ 636
+ L+ L V + AQ
Sbjct: 503 RKLFSELFVKGLQPNAQ 519
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 17/195 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMEL 408
LINGY K + E L + H + + + +I L QLG L A ++ +M
Sbjct: 384 LINGYCKVKRIDEAKQLFNEMI--HQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHT 441
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G+ + TY LL + K F +A L + M+ + NL V+ + KS
Sbjct: 442 NGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNL----VMYNILIDAMCKSG 497
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ D L +E ++ ++ A + T + I CK ++ +AL+ +R M+E
Sbjct: 498 NLRDARKL-----FSELFVKGLQPNAQIYT-----TIINGLCKEGLLDEALEAFRNMEED 547
Query: 529 KIRPTVETFYYLVYG 543
P ++ ++ G
Sbjct: 548 GCPPDEISYNVIIRG 562
>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
Length = 818
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/245 (20%), Positives = 96/245 (39%), Gaps = 26/245 (10%)
Query: 372 KEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMF 431
EH + S ++D L +G ++ A ++L ++ G D+ Y ++L + +
Sbjct: 418 SEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQW 477
Query: 432 REAEALLKQMRKS-CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS--DLAESLIQ 488
AE L+ +M S C ++ VV +SL K D A +++
Sbjct: 478 ERAEELMAEMLCSDCPPDEVTFNTVV-----------------ASLCQKGLVDRAIRVVE 520
Query: 489 EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548
+M E I N I C I DA+++ +Q +P + TF L+ G ++
Sbjct: 521 QMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVD 580
Query: 549 MYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
+ D L ++ R N L + T++ + Q G + +E + M + +
Sbjct: 581 RWEDAEQLMANMMRSNCPPDELT-----FNTVITSLCQKGLLTQAIETLKIMAENGCVPN 635
Query: 608 KLMYK 612
Y
Sbjct: 636 SSTYS 640
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 90/264 (34%), Gaps = 57/264 (21%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++NGY + G+ + L+ + +F + L I AL G + A + DDM
Sbjct: 225 MVNGYCRAGRIEDARRLINGMPFPPDTFTFNPL----IRALCVRGRIPDALAVFDDMLHR 280
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G TY LL A K +R+A A
Sbjct: 281 GCSPSVVTYSILLDATCKESGYRQAMA--------------------------------- 307
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
L+ EMR + I N I C + +AL I +
Sbjct: 308 ----------------LLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHG 351
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
+P T+ ++ E ++++ L ++ N A + T++ + Q G
Sbjct: 352 CKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSN----NCAPDEVTFNTIVTSLCQQGLV 407
Query: 590 ERVMEVIGYMKKQNMYVDKLMYKS 613
+R +EV+ +M + D + Y S
Sbjct: 408 DRAIEVVDHMSEHGCVADIVTYSS 431
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/272 (19%), Positives = 108/272 (39%), Gaps = 35/272 (12%)
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
LLS K + ++ + V+ L E A +++ +M + P D T+ +++ +
Sbjct: 448 LLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLC 507
Query: 427 KVKMFREAEALLKQMRKS----------CLVQNLSCEMVVSERFSEVAD------KSASF 470
+ + A +++QM ++ C++ L E + + ++D K
Sbjct: 508 QKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIV 567
Query: 471 TDTSSL-----MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
T + L +D+ + AE L+ M N+ I C+ ++ A++ + M
Sbjct: 568 TFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIM 627
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE--SGVLAVSRDL--YETLLL 581
E P T+ +V D + G + +E SG+ + DL Y T++
Sbjct: 628 AENGCVPNSSTYSIVV----------DALLKAGKAQAALELLSGMTNGTPDLITYNTVIS 677
Query: 582 NFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
N + G E ++++ M + D Y+S
Sbjct: 678 NLTKAGKMEEALDLLRVMVSNGLCPDTTTYRS 709
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 48/248 (19%), Positives = 91/248 (36%), Gaps = 25/248 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK-S 444
++DA + A +LD+M G D TY L+ A EA +L +
Sbjct: 292 LLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHG 351
Query: 445 CLVQNLSCEMVV-----SERFSEVADKSASFTDTSSLMDK---------------SDLAE 484
C ++ V+ SER+ EV + A T + D+ D A
Sbjct: 352 CKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAI 411
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
++ M E ++ I +S + C + DA+++ R++ +P + ++ G
Sbjct: 412 EVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGL 471
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
S E + L ++ + T++ + Q G +R + V+ M +
Sbjct: 472 CSTEQWERAEELMAEML----CSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGC 527
Query: 605 YVDKLMYK 612
D + Y
Sbjct: 528 SPDIVTYN 535
>gi|255661168|gb|ACU25753.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 352
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + + N L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
Length = 1302
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/302 (18%), Positives = 137/302 (45%), Gaps = 27/302 (8%)
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL 393
L NG L ++ M ++ + + G+ +E +++ ++ + + T+ + V++ ++L
Sbjct: 738 LLANGNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITM-NCVLEIAVEL 796
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSC 452
G +E A ++ D+M + G DS++YK ++ ++ +EA+ L M ++ + N +C
Sbjct: 797 GLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATC 856
Query: 453 EMVVSE------------RFSEVADKS--ASFTDTSSLMD----KSDLAES--LIQEMRE 492
++++ F ++ D + + +SL+D K + ++ +++EM
Sbjct: 857 TLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVR 916
Query: 493 EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM-QEMKIRPTVETFYYLVYGHSSLEMYR 551
+Y + I CK A +++ ++ + +P V T+ ++ G+ +
Sbjct: 917 NGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLN 976
Query: 552 DITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+L+ +K E G+ + + Y TL+ + G F R E++ M + + Y
Sbjct: 977 RAEMLFSRMK---EQGLFP-NVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTY 1032
Query: 612 KS 613
+
Sbjct: 1033 NA 1034
>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
Length = 645
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 22/243 (9%)
Query: 373 EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
EH + + + +ID + + LE A IL+ M G + Y +LL +
Sbjct: 280 EHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWE 339
Query: 433 EAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491
EAE LL +M K C + +++ ++V F + L+D+ ++++M
Sbjct: 340 EAEGLLAEMFDKDCPLDDVTFNILVD------------FLCQNGLVDR---VIEVLEQML 384
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYR 551
E + + + I FCK +I +A+ + R M RP ++ ++ G S E +
Sbjct: 385 EHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWV 444
Query: 552 DITILWGDIKRNIESGVLAVSRDLYETLLLNFL-QGGYFERVMEVIGYMKKQNMYVDKLM 610
D L + + I+ G + L+NFL + G E+ +E++ M D +
Sbjct: 445 DAEEL---MSQMIQQG--CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLIS 499
Query: 611 YKS 613
Y +
Sbjct: 500 YST 502
>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1016
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 120/269 (44%), Gaps = 25/269 (9%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKK---EHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
+ ++NG K G+ SE LL +KK + + +TL ID+L + G A
Sbjct: 277 SSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTL----IDSLFKAGSAWEAFACQS 332
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
+ + G +D +L+ +K +EAE + + + K L+ N + + + +V
Sbjct: 333 QLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVG 392
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
D M++ ESL+QEM E+ + +S I + K ++ +A+ + ++
Sbjct: 393 D-----------MER---VESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKK 438
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
M + I P + L+ G+ T L+ ++K SG L V+ L++ L+ N
Sbjct: 439 MLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKL---SG-LKVNNVLFDVLVNNLK 494
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+G + E++ + + + +D + Y S
Sbjct: 495 RGKRMDEAEELLKDVTSRGLLLDHVNYTS 523
Score = 45.4 bits (106), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 117/268 (43%), Gaps = 26/268 (9%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
+ +INGY K G L + +KK + + + + + +ID + G E A D+ ++
Sbjct: 417 SSIINGYTKKGI---LDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNE 473
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD 465
M+L+G +++ + L+ + K EAE LLK + L+ + + + F +
Sbjct: 474 MKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGK 533
Query: 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK-GKMIGDALKIYRR 524
+SA+ ++++EM E++ + N I + GK +A +Y
Sbjct: 534 ESAAL--------------NMVEEMTEKSIPFDVVTYNVLINGLLEHGKY--EAKSVYSG 577
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
M EM + P T+ ++ + + LW ++K S + S TL++
Sbjct: 578 MIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEMK----SHKIMPSSITCNTLVVGLS 633
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYK 612
+ G E+ M V+ M ++ + ++++
Sbjct: 634 EAGEIEKAMNVLNEMSVMGIHPNLVIHR 661
>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
Length = 667
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 100/233 (42%), Gaps = 13/233 (5%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I QLG L AA D+L +M +G + T +LL ++A + K M+K
Sbjct: 427 TTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQK 486
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTD-TSSLMDKSDL--AESLIQEMREEAALSTIY 500
S + ++ S F++V ++ L+++ AE L +EM +
Sbjct: 487 SKM------DLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTI 540
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
NS I CK + +A +++ M P V TF L+ G+ + D ++ ++
Sbjct: 541 TYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEM 600
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
R G++A + Y TL+ F Q G +++ M +Y D + ++
Sbjct: 601 GRR---GIVA-NAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRN 649
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 110/281 (39%), Gaps = 42/281 (14%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+ING+ G+ SE LL + + S T S +I+AL++ G A ++ ++M
Sbjct: 289 MINGFCSSGRWSEAQRLLREMFERKMSPDVVTF-SVLINALVKEGKFFEAEELYNEMLPR 347
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSA 468
G ++ TY S++ + K AE + M K C ++ +++
Sbjct: 348 GIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILI------------ 395
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
D + D L+ EM ++ + I+ FC+ + AL + + M
Sbjct: 396 ---DGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISS 452
Query: 529 KIRPTVETFYYLVYG-------HSSLEMYR---------DITILWGDIKRNIESGVLAVS 572
+ P V T L+ G +LEM++ D + + D++ ++++
Sbjct: 453 GVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQT------ 506
Query: 573 RDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y L+ + G F E+ M + + D + Y S
Sbjct: 507 ---YNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNS 544
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 99/252 (39%), Gaps = 18/252 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+++G K G LL +++ + S +ID L + G A ++ +M+
Sbjct: 216 GTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQ 275
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G + TY ++ + + EA+ LL++M + + +S ++V K
Sbjct: 276 EKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFE----RKMSPDVVTFSVLINALVKE 331
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
F + AE L EM + NS I F K + A +++ M
Sbjct: 332 GKFFE----------AEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMAT 381
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
P V TF L+ G+ + D L ++ R G++A + Y TL+ F Q G
Sbjct: 382 KGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRR---GLVA-NTITYTTLIHGFCQLG 437
Query: 588 YFERVMEVIGYM 599
++++ M
Sbjct: 438 NLNAALDLLQEM 449
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ L + G + A +LD M G + TY +++ K+ A LL++M +
Sbjct: 181 TTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEE 240
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
V + +V+ + K TD A++L EM+E+ ++ N
Sbjct: 241 ---VSRIKPNVVIYSAIIDGLWKDGRQTD----------AQNLFSEMQEKGISPNLFTYN 287
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
I FC +A ++ R M E K+ P V TF L+
Sbjct: 288 CMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLI 325
>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
Length = 332
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 112/266 (42%), Gaps = 19/266 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ING K G ++E + LLS +E H + + +ID L + G A ++ +M
Sbjct: 45 GTIINGLCKMG-DTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMH 103
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY ++ ++ + + +AE LL+ M + + ++ ++V K
Sbjct: 104 DKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDM----IERQINPDVVTFSALINALVKE 159
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
++ AE + +M T NS I FCK + DA ++ M
Sbjct: 160 GKVSE----------AEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMAS 209
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
P V TF L+ G+ + + ++ ++ R G++A + Y TL+ F Q G
Sbjct: 210 KSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRR---GIVA-NTVTYTTLIHGFCQVG 265
Query: 588 YFERVMEVIGYMKKQNMYVDKLMYKS 613
+ +++ M + + + ++S
Sbjct: 266 DLDAAQDLLNVMISSGVAPNYITFQS 291
>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
Length = 948
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 118/277 (42%), Gaps = 43/277 (15%)
Query: 350 LINGYKKHG-----KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL- 403
LI GY HG K E +L I + + L + +I+ + G E A D+L
Sbjct: 306 LIQGYLMHGLCRMGKVDEARAMLSKIPNPN-----TVLYNTLINGYVVSGRFEEAKDLLY 360
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
+M +AG D+ T+ ++ K A L +M K N+ ++ + F
Sbjct: 361 KNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFC-- 418
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
K F + S +++ S A+ L +L+T+ N I CK I DAL++Y
Sbjct: 419 --KQGHFEEASKVVN-SMSAKGL--------SLNTV-GYNCLIGALCKDGKIQDALQMYG 466
Query: 524 RMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITILWGDIKRNIESGVLAVSRDLY 576
M +P + TF L+YG +L +YRD+ + GV+A + Y
Sbjct: 467 EMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLL----------EGVIA-NTVTY 515
Query: 577 ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
TL+ FL+ ++ +++G M+ + +D + Y
Sbjct: 516 NTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNG 552
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 89/202 (44%), Gaps = 21/202 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I A ++L ++ A ++ +M G P+D+ TY L+ A K + L++QM
Sbjct: 516 NTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFG 575
Query: 444 SCLVQNL-SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
+ ++ SC ++++ SF T + D A +++M + I
Sbjct: 576 EEIFPSINSCNILIN-----------SFCRTGKVND----ALQFLRDMIQRGLTPDIVTY 620
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
NS I CK +AL ++ +Q I P T+ L+ + ++ D L + +
Sbjct: 621 NSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQL---LFK 677
Query: 563 NIESGVLAVSRDLYETLLLNFL 584
+ +G + ++ ++L+N+
Sbjct: 678 GVSNGF--IPNEITWSILINYF 697
>gi|255661214|gb|ACU25776.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 426
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 133/315 (42%), Gaps = 40/315 (12%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G + LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDGALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSKL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y S++ + K ++FREA +L+ +MR + ++ N L V ++RF
Sbjct: 71 KRSGITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTLLTMYVENKRF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 REALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKDIVQNVVTYNTMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY--------KSEF 615
IE + Y T++ + + G +R + ++ + +D+++Y ++
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRVSGIEIDQVLYQTMIVAYERAGL 304
Query: 616 LKHHKHLYRRLKVSN 630
+ H K L LK N
Sbjct: 305 VAHAKRLLHELKRPN 319
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 106/251 (42%), Gaps = 36/251 (14%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + ++V+ E++ K ++
Sbjct: 8 DRYTYSTLITHFGKEGLFDGALSWLQKMEQD----RVPGDLVLYSNLIELSRKLCDYSKA 63
Query: 474 SSLMDK-------SDL------------------AESLIQEMREEAALSTIYKLNSSIYF 508
S+ K DL A SLI EMR + ++ +
Sbjct: 64 ISIFSKLKRSGITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTLLTM 123
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESG 567
+ + K +AL ++ M+E+K + T ++ + L+M ++ + WG K IE
Sbjct: 124 YVENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWGMRKMGIEPN 183
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLK 627
V++ Y TLL + F + + M+++++ + + Y + + + K L K
Sbjct: 184 VVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKDIVQNVVTYNTMMMIYGKTLEHE-K 237
Query: 628 VSNARTEAQSK 638
+N E Q++
Sbjct: 238 ANNLIQEMQNR 248
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 75/351 (21%), Positives = 145/351 (41%), Gaps = 45/351 (12%)
Query: 294 KPYLISIGSPNLRCGL--KLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLI 351
+P L++ + L GL K +IM + D ++KM + +++ + + +I
Sbjct: 7 QPTLVTFNT--LLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITY------------STII 52
Query: 352 NGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGH 411
NG K G N+ ++ LL +E + +ID+L + + A D +M G
Sbjct: 53 NGLCKMG-NTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGI 111
Query: 412 PMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFT 471
P D TY S+L + + EA +L KQM + ++ N F+ + D
Sbjct: 112 PPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPN-------KVTFTILID------ 158
Query: 472 DTSSLMDKSDLAES--LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
L K ++E+ + + M E+ +Y N+ + +C + +A K++ M
Sbjct: 159 ---GLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKG 215
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNFLQGG 587
P V ++ L+ GH + L ++ +++ D+ Y TL+ F Q G
Sbjct: 216 CAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHK------SLTPDIFTYSTLMRGFCQVG 269
Query: 588 YFERVMEVIGYMKKQNMYVDKLMYKS--EFLKHHKHLYRRLKVSNARTEAQ 636
+ E++ M + + + Y + L H HL ++ A E++
Sbjct: 270 RPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESK 320
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/251 (19%), Positives = 94/251 (37%), Gaps = 34/251 (13%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K SE +WL+ E + + ++D ++ A + + M+
Sbjct: 156 LIDGLCKKRMISE-AWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRK 214
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + +Y L+ + K EA+ LL +M L ++ + F +V
Sbjct: 215 GCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVG----- 269
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
+ A+ L++EM L + + + CK + +A ++ + MQE K
Sbjct: 270 ---------RPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESK 320
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
I P + + L+ G + G L +R+L+ L + +Q
Sbjct: 321 IEPNIFIYTILIEGMCTF-------------------GKLEAARELFSNLFVKGIQPTVV 361
Query: 590 ERVMEVIGYMK 600
+ + G +K
Sbjct: 362 TYTVMISGLLK 372
>gi|255661164|gb|ACU25751.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 426
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + + N L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSXFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 103/247 (41%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL + M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSXFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
Length = 773
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 110/249 (44%), Gaps = 22/249 (8%)
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
+L+ EH + + + +ID + + G LE A++IL+ M G + Y ++L
Sbjct: 273 VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLC 332
Query: 427 KVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES 485
+ ++EAE LL +M +K C + +++ ++V F + L+D+
Sbjct: 333 SAERWKEAEELLSEMFQKDCPLDDVTFNILV------------DFFCQNGLVDR---VIE 377
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
L+++M + + + I FCK +I +A+ + + M +P ++ ++ G
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLC 437
Query: 546 SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL-QGGYFERVMEVIGYMKKQNM 604
S + D L + + I+ G + L+NFL + G E+ +E++ M
Sbjct: 438 SAGRWVDAEEL---MSQMIQQG--CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGC 492
Query: 605 YVDKLMYKS 613
D + Y +
Sbjct: 493 SPDLISYST 501
>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 654
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 100/233 (42%), Gaps = 13/233 (5%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I Q+G L AA D+L +M +G + T +LL ++A + K M+K
Sbjct: 400 TTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQK 459
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTD-TSSLMDKSDL--AESLIQEMREEAALSTIY 500
S + ++ S F+ V ++ S L+++ AE L +EM +
Sbjct: 460 SKM------DIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 513
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
NS I+ CK + +A +++ M P V TF L+ G+ D L+ ++
Sbjct: 514 TYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 573
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
R G++A + Y TL+ F + G +++ M +Y D + ++
Sbjct: 574 GRR---GIVA-NAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRN 622
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 18/194 (9%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+ A+ K F EAE L +M ++ + +S D
Sbjct: 290 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPS--------------TITYSSMIDG 335
Query: 474 SSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT 533
++ D AE + M + I N+ I +C+ K + D +K+ M E +
Sbjct: 336 FCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVAN 395
Query: 534 VETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVM 593
T+ L++G + D+ ++ + SGV + TLL G + +
Sbjct: 396 TITYTTLIHGFCQVG---DLNAAQDLLQEMVSSGVCP-NVVTCNTLLDGLCDNGKLKDAL 451
Query: 594 EVIGYMKKQNMYVD 607
E+ M+K M +D
Sbjct: 452 EMFKAMQKSKMDID 465
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 60/240 (25%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+ING+ G+ SE LL + + + + +I+A ++ G A ++ D+M
Sbjct: 261 MINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR 320
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAE---------------------------------- 435
G + TY S++ + K AE
Sbjct: 321 GIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDG 380
Query: 436 -ALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEA 494
LL +M ++ LV N + F +V D +A A+ L+QEM
Sbjct: 381 IKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNA--------------AQDLLQEMVSSG 426
Query: 495 ALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK-----------IRPTVETFYYLVYG 543
+ N+ + C + DAL++++ MQ+ K + P V+T+ L+ G
Sbjct: 427 VCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISG 486
>gi|298707411|emb|CBJ30040.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 564
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 14/161 (8%)
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
T S + A G E A +LD M G P + T+ + ++A K +R A +L++
Sbjct: 148 TTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTILRR 207
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
MR + N+ + D + LA+ L+ EMRE+ +
Sbjct: 208 MRAANCPPNV--------------QTYTAAIDACGKAGEWRLAQGLLAEMREKGVAPNVI 253
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
NS+I G +AL + R M M ++P + ++ V
Sbjct: 254 TFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAV 294
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 20/157 (12%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ I AL G + A ++L DM G + +Y + +TA + A A+ +QMR
Sbjct: 256 NSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARALAVHEQMRS 315
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFT---DTSSLMDKSDLAESLIQEMREEAALSTIY 500
+ R EV SFT D + ++A +L+ EMR+E T+
Sbjct: 316 RGI------------RGDEV-----SFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVR 358
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
+++I KG+ G A+ + R M+E+ + P +F
Sbjct: 359 SFSTAISACGKGQQWGRAVALLREMEEVGVSPNEVSF 395
>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
Length = 694
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 45/259 (17%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VID L + G L A + M+ G D TY SL+ Y K E E L+ +MRKS
Sbjct: 205 VIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSG 264
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
++ + FS+ ++K A S EM+ ++ + L++
Sbjct: 265 CAADVVTYNALINCFSKFG-----------WIEK---AYSYFGEMKRLGVMANVVTLSTF 310
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN-- 563
+ FCK ++ +A+K++ +M+ + P T+ LV G D +L ++
Sbjct: 311 VDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGL 370
Query: 564 --------------IESGVLAVSRD---------------LYETLLLNFLQGGYFERVME 594
+ G +AV+ D LY TL+ ER ++
Sbjct: 371 VPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALD 430
Query: 595 VIGYMKKQNMYVDKLMYKS 613
++ MK + M +D +Y +
Sbjct: 431 LLNEMKNKGMELDVSLYGT 449
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 15/195 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+GY K G+ E+ L+ ++K + T + +I+ + G++E A+ +M+
Sbjct: 240 LIDGYGKCGELEEVELLVSEMRKSGCAADVVTY-NALINCFSKFGWIEKAYSYFGEMKRL 298
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + T + + A+ K + REA L QMR ++ N F+ S
Sbjct: 299 GVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPN---------EFT-----YTS 344
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D + + D A L+ EM + + + + CK + A + M+
Sbjct: 345 LVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAG 404
Query: 530 IRPTVETFYYLVYGH 544
++ + L++GH
Sbjct: 405 VKANELLYTTLIHGH 419
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
L++ + E ++ N I F CK + +A ++ RM+ M P V T+ L+ G+
Sbjct: 185 GLVRRLFEHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGY 244
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
++ +L ++++ SG A Y L+ F + G+ E+ G MK+
Sbjct: 245 GKCGELEEVELLVSEMRK---SGC-AADVVTYNALINCFSKFGWIEKAYSYFGEMKR 297
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 117/286 (40%), Gaps = 27/286 (9%)
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
K++NGY K G E + + I + T S +I Q L++A + ++M L
Sbjct: 223 KMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTS-LIMGYCQRKDLDSAFKVFNEMPL 281
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV------SERFSE 462
G + Y L+ + EA L +M+ + V+ SER SE
Sbjct: 282 KGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSE 341
Query: 463 VADKSASFTDT---------SSLMD------KSDLAESLIQEMREEAALSTIYKLNSSIY 507
+ +T + L+D K + A L+ +M E+ + + N+ I
Sbjct: 342 ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALIN 401
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESG 567
+CK MI DA+ + M+ K+ P T+ L+ G+ +++ + +L ++R +
Sbjct: 402 GYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPD 461
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
V+ Y +L+ + G F+ ++ M + + D+ Y S
Sbjct: 462 VVT-----YNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTS 502
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 22/219 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G + G N + ++ LLS+ + + + +ID+L + +E A D+ D +E
Sbjct: 468 LIDGQCRSG-NFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQK 526
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVV------------ 456
G + Y +L+ Y K EA +L++M K+CL +L+ ++
Sbjct: 527 GVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEA 586
Query: 457 ---SERFSEVADKSASFTDT---SSLMDKSDL--AESLIQEMREEAALSTIYKLNSSIYF 508
E+ ++ + TDT L+ D A S Q+M + + I
Sbjct: 587 TLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQT 646
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL 547
+C+ + DA + +M+E + P + T+ L+ G+ L
Sbjct: 647 YCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDL 685
>gi|255661186|gb|ACU25762.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 426
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 130/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + ++ N L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E + + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + K
Sbjct: 250 IEPNSIT-----YSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEK 301
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR + + + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|255661130|gb|ACU25734.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 426
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + + N L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIDQNVVTYNSMMMIYG-KTLEHVKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L +K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIDQNVVTYNSMMMIYGKTL-EHVKANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
Length = 772
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 110/249 (44%), Gaps = 22/249 (8%)
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
+L+ EH + + + +ID + + G LE A++IL+ M G + Y ++L
Sbjct: 273 VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLC 332
Query: 427 KVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES 485
+ ++EAE LL +M +K C + +++ ++V F + L+D+
Sbjct: 333 SAERWKEAEELLSEMFQKDCPLDDVTFNILV------------DFFCQNGLVDR---VIE 377
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
L+++M + + + I FCK +I +A+ + + M +P ++ ++ G
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLC 437
Query: 546 SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL-QGGYFERVMEVIGYMKKQNM 604
S + D L + + I+ G + L+NFL + G E+ +E++ M
Sbjct: 438 SAGRWVDAEEL---MSQMIQQG--CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGC 492
Query: 605 YVDKLMYKS 613
D + Y +
Sbjct: 493 SPDLISYST 501
>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 680
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 109/261 (41%), Gaps = 29/261 (11%)
Query: 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST 416
G E + +L +H +TLC+ VI+A+ + G ++ A+D L++M + G D+
Sbjct: 304 RGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTI 363
Query: 417 TYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSS 475
+Y ++L + + A+ LL +M RK+C +F
Sbjct: 364 SYTTVLRGLCRAGRWEHAKELLPEMVRKNC------------------PPNEVTFNTFIC 405
Query: 476 LMDKSDLAES---LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP 532
++ + L E LI+ M E I N+ ++ FC + AL+++ + P
Sbjct: 406 ILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELF---NNLPCEP 462
Query: 533 TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
T+ L+ G E L ++ + + + AV+ + L+ F Q G+ E
Sbjct: 463 NTITYTTLLTGLCHAERLDAAAELLAEMIQK-DCPLNAVT---FNVLVSFFCQKGFVEEA 518
Query: 593 MEVIGYMKKQNMYVDKLMYKS 613
ME++ M + + + + +
Sbjct: 519 MELVNQMMEHGCTPNLITFNT 539
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 18/142 (12%)
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
E KS+ F + +++D EMR + I N I C+ + DA +I
Sbjct: 195 EAVCKSSGFGEAMNVLD----------EMRAKGCTPNIVTYNVIINGMCREGRVDDAKEI 244
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI--KRNIESGVLAVSRDLYETL 579
R+ +P + ++ ++ G + + D+ +L+ ++ K+ + + V ++ L
Sbjct: 245 LNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEV------TFDML 298
Query: 580 LLNFLQGGYFERVMEVIGYMKK 601
+ F +GG ER ++V+ M +
Sbjct: 299 VRFFCRGGMVERAIQVLQQMSQ 320
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 98/233 (42%), Gaps = 30/233 (12%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ LI+G K K E + LL+ E + S V+D L+++G +E A +L M
Sbjct: 247 STLIDGLSKMAKMDE-ALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMR 305
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-----RKSCLVQNLSCE-MVVSERFS 461
AG D+ TY +L+ ++K + REA LL++M S + C + S RF
Sbjct: 306 DAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFD 365
Query: 462 ---EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL-------------NSS 505
E+ D A+ + + S + + L + R AL K+ ++
Sbjct: 366 EAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSAL 425
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYR 551
I CK I +A + RM P V TF L+ G + LE++R
Sbjct: 426 IDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFR 478
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 130/311 (41%), Gaps = 28/311 (9%)
Query: 313 IMPELLEKDSILKMEGKQELV-----LFRNGKLLHSNRAMAK---LINGYKKHGKNSELS 364
I P+++ +++ GKQ V LF + + + +I+G K G+ E +
Sbjct: 26 IYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGR-IENA 84
Query: 365 WLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423
L H F + + S +ID L + ++ +L++M G ++ TY +L+
Sbjct: 85 LTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVN 144
Query: 424 AYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL 482
A +EA +LL+QM C + ++ +++ E ++A M +S L
Sbjct: 145 ALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGL 204
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
+ +I NS + CK + I DA +++R E RP V T+ L+
Sbjct: 205 SPDVIT-------------FNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLID 251
Query: 543 GHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602
G S + + L + + +E G A + Y T++ L+ G E + V+ M+
Sbjct: 252 GLSKMAKMDEALQL---LAKMVELGCRA-NTVTYSTVVDGLLKVGRMEDAVVVLRQMRDA 307
Query: 603 NMYVDKLMYKS 613
D + Y +
Sbjct: 308 GCLPDAVTYNT 318
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 111/267 (41%), Gaps = 23/267 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL- 408
L+N G++ E ++ LL + E +I L + G +EAA ++D+M +
Sbjct: 142 LVNALLGQGRSKE-AFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMI 200
Query: 409 -AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ-MRKSCLVQNLSCEMVVSERFSEVADK 466
+G D T+ S+L K + +A + K+ + + C ++
Sbjct: 201 ESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVT--------------- 245
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
++ D S M K D A L+ +M E + ++ + K + DA+ + R+M+
Sbjct: 246 YSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMR 305
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
+ P T+ L+ G + R+ G ++ +E+G S Y TL +
Sbjct: 306 DAGCLPDAVTYNTLIDGFFKRQRLREAV---GLLREMLEAG-FHPSVVTYTTLCHGLCRS 361
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKS 613
G F+ +E++ YM + + + Y S
Sbjct: 362 GRFDEAVEILDYMAARGCAPNAITYSS 388
>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
Length = 647
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 91/197 (46%), Gaps = 21/197 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L++G+ K G+ E + L L E ++ + +ID L +LG +E + +M
Sbjct: 295 LVDGFLKLGRLDE-ALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNR 353
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLSCEMVVSE--RFSEVADK 466
G+ D+ TY +L+ + K KM +A + +QM +S +V ++ +++ + VA+
Sbjct: 354 GYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEA 413
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
A+F M E ++T+ ++ + FC + A++++RRM
Sbjct: 414 YATFL-----------------AMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRML 456
Query: 527 EMKIRPTVETFYYLVYG 543
+ P + ++ ++ G
Sbjct: 457 DRGCEPNLVSYNIIIRG 473
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 122/298 (40%), Gaps = 28/298 (9%)
Query: 339 KLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEA 398
K L + L++G K G+ E +L + ++ +S T + VID L + G +E
Sbjct: 106 KCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTY-TVVIDGLSKAGRVEE 164
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE 458
A I DM G D+ Y +L++ K+ EA L QM ++ + + ++V+
Sbjct: 165 ARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHN 224
Query: 459 RFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDA 518
S + D + D+ D + L T + N + CK + +A
Sbjct: 225 LVIRQLCASGNLEDALAYFDELDDSLDL-----------THFTFNPLVAALCKAERTEEA 273
Query: 519 LKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVL--AVSRDLY 576
+ ++M E + PT+ T+ LV G L + + +K +E G + AV+ Y
Sbjct: 274 IAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALL---QLKEAVERGFIPDAVT---Y 327
Query: 577 ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY--------KSEFLKHHKHLYRRL 626
+++ + G E E M+ + D + Y K++ + +YR++
Sbjct: 328 TSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQM 385
>gi|255661170|gb|ACU25754.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 426
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + + N L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|168061839|ref|XP_001782893.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665615|gb|EDQ52293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 713
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 82/380 (21%), Positives = 153/380 (40%), Gaps = 56/380 (14%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
++ D++ FN++++A R G LM +V D + IL I+ RD
Sbjct: 126 LQQDSVTFNIIMNALNRVGRIRDVDRYWALMRMGRIVPDLTTCSIL--INAFGRARD-WH 182
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFK---FDDIDAAGELILDMNRYREPLPNPKLR 289
K + ++ T Y SL+S++ K F +++ + + RE L N L
Sbjct: 183 KVDLVLAEMETYGIKADLMIYNSLISVYGKAGLFYEVELVVKSLRAEIARREDLGNSSLA 242
Query: 290 QDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQ---ELVLFRNGKLLHSNR- 345
D L+ +++L + GK + V++ G++ S
Sbjct: 243 FD-------------------------LVTYNTLLDVYGKAGRLDDVIYWFGEMKKSGVQ 277
Query: 346 ----AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHD 401
L+N Y GK S +L + ++++ + + ++ + G A
Sbjct: 278 PDVLTFDSLVNAY---GKASHYDGEVLELFRKYNYKSDLVFYNTLLFMFGKGGHYADAWK 334
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
IL+DM+ AG S TY SL+ A+ + ++EAE L++M+ + +
Sbjct: 335 ILEDMKAAGFMPTSETYNSLILAFGRGSQWQEAENTLERMKANGV--------------K 380
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
VA + + SL + E LI +M+EE + I NS + F+ + IG ++
Sbjct: 381 PVAQSFSFLLEAYSLSGQIPKGEKLIVKMKEENLIYGIAGHNSLLRFYMRAGDIGSIIQT 440
Query: 522 YRRMQEMKIRPTVETFYYLV 541
Y Q +P +F ++
Sbjct: 441 YETCQTRGPKPNQSSFVPMI 460
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 106/273 (38%), Gaps = 69/273 (25%)
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
T CS +I+A + +L +ME G D Y SL++ Y K +F E E ++K
Sbjct: 166 TTCSILINAFGRARDWHKVDLVLAEMETYGIKADLMIYNSLISVYGKAGLFYEVELVVKS 225
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
+R +E+A + + S LA L+
Sbjct: 226 LR------------------AEIARRED--------LGNSSLAFDLV------------- 246
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV--YGHSS------LEMYRD 552
N+ + + K + D + + M++ ++P V TF LV YG +S LE++R
Sbjct: 247 TYNTLLDVYGKAGRLDDVIYWFGEMKKSGVQPDVLTFDSLVNAYGKASHYDGEVLELFR- 305
Query: 553 ITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
K N +S ++ Y TLL F +GG++ +++ MK Y
Sbjct: 306 --------KYNYKSDLV-----FYNTLLFMFGKGGHYADAWKILEDMKAAGFMPTSETYN 352
Query: 613 SEFL--------KHHKHLYRRLKVSNARTEAQS 637
S L + ++ R+K + + AQS
Sbjct: 353 SLILAFGRGSQWQEAENTLERMKANGVKPVAQS 385
>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
Length = 644
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 110/249 (44%), Gaps = 22/249 (8%)
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
+L+ EH + + + +ID + + G LE A++IL+ M G + Y ++L
Sbjct: 273 VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLC 332
Query: 427 KVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES 485
+ ++EAE LL +M +K C + +++ ++V F + L+D+
Sbjct: 333 SAERWKEAEELLSEMFQKDCPLDDVTFNILV------------DFFCQNGLVDR---VIE 377
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
L+++M + + + I FCK +I +A+ + + M +P ++ ++ G
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLC 437
Query: 546 SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL-QGGYFERVMEVIGYMKKQNM 604
S + D L + + I+ G + L+NFL + G E+ +E++ M
Sbjct: 438 SAGRWVDAEEL---MSQMIQQG--CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGC 492
Query: 605 YVDKLMYKS 613
D + Y +
Sbjct: 493 SPDLISYST 501
>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
Length = 644
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 110/249 (44%), Gaps = 22/249 (8%)
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
+L+ EH + + + +ID + + G LE A++IL+ M G + Y ++L
Sbjct: 273 VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLC 332
Query: 427 KVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES 485
+ ++EAE LL +M +K C + +++ ++V F + L+D+
Sbjct: 333 SAERWKEAEELLSEMFQKDCPLDDVTFNILV------------DFFCQNGLVDR---VIE 377
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
L+++M + + + I FCK +I +A+ + + M +P ++ ++ G
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLC 437
Query: 546 SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL-QGGYFERVMEVIGYMKKQNM 604
S + D L + + I+ G + L+NFL + G E+ +E++ M
Sbjct: 438 SAGRWVDAEEL---MSQMIQQG--CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGC 492
Query: 605 YVDKLMYKS 613
D + Y +
Sbjct: 493 SPDLISYST 501
>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
protein [Medicago truncatula]
gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
protein [Medicago truncatula]
Length = 970
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 119/269 (44%), Gaps = 23/269 (8%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD-VIDALIQLGFLEAAHDILD 404
A++ L++G +K G N + ++ L+ +K F + + +I+AL + L+ A +
Sbjct: 325 AVSGLVDGLRKKG-NIDSAYDLV-VKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYK 382
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
+M P++ TY L+ ++ K M AE+ +M + + + + ++ +
Sbjct: 383 NMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIY-------PYNSLI 435
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
+ F D S+ AE L +M E T + I +CK + A K+YR
Sbjct: 436 NGHCKFGDLSA-------AEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYRE 488
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNF 583
M E +I P+V TF L+YG S + + L+ + ++R I+ + Y ++ +
Sbjct: 489 MNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKP-----TEVTYNVMIEGY 543
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
+ ++ E++ M + D Y+
Sbjct: 544 CKAHNMDKAFELLEDMLHNGLVPDTYTYR 572
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 79/197 (40%), Gaps = 22/197 (11%)
Query: 350 LINGYKKHG---KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+I+ Y K G K+ E L+++ K F + ++ L ++G ++ A + + M
Sbjct: 679 MIDAYSKEGSFKKSGECLDLMVTEK----CFPNVVTYTAFMNGLCKVGEIDRAGHLFEKM 734
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
A +S TY L + K +EA L +M K L + +++
Sbjct: 735 LTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLKGLLANTATYNILIR--------- 785
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
F L++ A ++ EM E ++ IY C+ +G A++++ M
Sbjct: 786 --GFCKLGRLIE----ATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTML 839
Query: 527 EMKIRPTVETFYYLVYG 543
+ P F L+YG
Sbjct: 840 RKGVEPDSVAFNLLIYG 856
>gi|255661134|gb|ACU25736.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
gi|255661138|gb|ACU25738.1| pentatricopeptide repeat-containing protein [Verbena halei]
gi|255661140|gb|ACU25739.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 426
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + + N L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301
Score = 42.0 bits (97), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|255661132|gb|ACU25735.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 426
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 128/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC-----EMVVSER-F 460
+ +G D Y +++ + K K+FREA +L+ +MR + + N + M V R F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENRKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 104/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
+ +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 RKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|410110149|gb|AFV61154.1| pentatricopeptide repeat-containing protein 123, partial
[Xeroaloysia ovatifolia]
Length = 431
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 130/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 16 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 73
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + ++ N L V +++F
Sbjct: 74 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYVENKKF 133
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E + + L+D + A+ L MR+ + N+
Sbjct: 134 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 193
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 194 LRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 252
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + K
Sbjct: 253 IEPNSIT-----YSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEK 304
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 28/257 (10%)
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
D+M D TY +L+T + K +F A + L++M + + +L + E ++
Sbjct: 1 DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60
Query: 464 ADKSASFTDTSSL------------------MDKSDL---AESLIQEMREEAALSTIYKL 502
D S + + S L K+ L A SLI EMR +
Sbjct: 61 CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIK 561
+ + + + K +AL ++ M+E+K + T ++ + L M ++ + WG K
Sbjct: 121 TTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKH 621
IE V++ Y TLL + F + + M+++N+ + + Y S + + K
Sbjct: 181 MGIEPNVVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKT 235
Query: 622 LYRRLKVSNARTEAQSK 638
L K +N E Q++
Sbjct: 236 LEHE-KANNLIQEMQNR 251
>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
Length = 863
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 111/267 (41%), Gaps = 24/267 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF-LEAAHDILDDMEL 408
LIN Y ++G+ E S LL K + VI+A + G E + +M
Sbjct: 182 LINAYGRNGR-YETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRH 240
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G D TY +LL+A + EAE + + M +V +L+ + E F +
Sbjct: 241 EGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGK------ 294
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ + + L+ EM +L I N + + K I +A+ ++ +MQ
Sbjct: 295 --------LRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA 346
Query: 529 KIRPTVETFYYLV--YGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
P T+ L+ +G S Y D+ L+ ++K + A Y L+ F +G
Sbjct: 347 GCTPNANTYSVLLNLFGQSG--RYDDVRQLFLEMKSSNTDPDAAT----YNILIEVFGEG 400
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKS 613
GYF+ V+ + M ++N+ D Y+
Sbjct: 401 GYFKEVVTLFHDMVEENIEPDMETYEG 427
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 14/172 (8%)
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
T S +++ +L LE D+L +M G D T+Y LL AY K +EA + Q
Sbjct: 283 TTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQ 342
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
M+ + N + V+ F + + D L EM+
Sbjct: 343 MQAAGCTPNANTYSVLLNLFGQSG--------------RYDDVRQLFLEMKSSNTDPDAA 388
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
N I F +G + + ++ M E I P +ET+ +++ ++ D
Sbjct: 389 TYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHED 440
>gi|255661158|gb|ACU25748.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 426
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + + N L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 323
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 112/266 (42%), Gaps = 19/266 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ING K G ++E + LLS +E H + + +ID L + G A ++ +M
Sbjct: 45 GTIINGLCKMG-DTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMH 103
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY ++ ++ + + +AE LL+ M + + ++ ++V K
Sbjct: 104 DKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDM----IERQINPDVVTFSALINALVKE 159
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
++ AE + +M T NS I FCK + DA ++ M
Sbjct: 160 GKVSE----------AEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMAS 209
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
P V TF L+ G+ + + ++ ++ R G++A + Y TL+ F Q G
Sbjct: 210 KSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRR---GIVANTV-TYTTLIHGFCQVG 265
Query: 588 YFERVMEVIGYMKKQNMYVDKLMYKS 613
+ +++ M + + + ++S
Sbjct: 266 DLDAAQDLLNVMISSGVAPNYITFQS 291
>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 102/242 (42%), Gaps = 25/242 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-- 441
+ +IDAL + + A+ + +M G D TY +L+ + +EA LL +M
Sbjct: 203 NTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVL 262
Query: 442 --------RKSCLVQNLSCEMVVSERFSEVAD--KSASFTDT---SSLMDKSDL------ 482
+ LV L E V E + +A K+ D S+LMD L
Sbjct: 263 KTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKK 322
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A+ + M ++ I FCK KM+ +AL +++ M + + P + T+ L+
Sbjct: 323 AQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLID 382
Query: 543 GHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602
G L I+ +W I + G+ A + Y +L+ + G+ +R + + MK Q
Sbjct: 383 G---LCKSGRISYVWDLIDEMRDRGIPA-NVITYNSLIDGLCKNGHLDRAIALFNKMKDQ 438
Query: 603 NM 604
+
Sbjct: 439 GI 440
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 14/160 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S ++D + L+ A + + M L G D +Y L+ + K KM EA L K+M +
Sbjct: 308 STLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQ 367
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+V + +S + D S + D LI EMR+ + + N
Sbjct: 368 KNMVPGIV-------TYSSLIDGLCKSGRISYVWD-------LIDEMRDRGIPANVITYN 413
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
S I CK + A+ ++ +M++ IRP TF L+ G
Sbjct: 414 SLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDG 453
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 15/188 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LING+ K+ E L + +++ G T S +ID L + G + D++D+M
Sbjct: 345 LINGFCKNKMVDEALNLFKEMHQKNMVPGIVTY-SSLIDGLCKSGRISYVWDLIDEMRDR 403
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G P + TY SL+ K A AL +M+ + S F+ + D
Sbjct: 404 GIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRP-------CSFTFTILLD---G 453
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
L D A+ Q++ + +YK N I CK ++ +AL + +M+E
Sbjct: 454 LCKGGRLKD----AQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENG 509
Query: 530 IRPTVETF 537
P TF
Sbjct: 510 CVPNAVTF 517
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 101/251 (40%), Gaps = 29/251 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI+ G EAA I M+ D TY S ++ K + EA +L ++ +S
Sbjct: 258 VINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESG 317
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS---------------------DLAE 484
LV N + + D +F +M++ + AE
Sbjct: 318 LVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAE 377
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VY 542
+I+EMRE+ + N I +C+ AL ++ M E IRPTVET+ L V+
Sbjct: 378 DMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVF 437
Query: 543 GHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602
G + ++ K++I+ G+L ++ L+ G +R +++ M
Sbjct: 438 GKRN-----RMSEAEEKFKKSIKEGMLP-DIIMFNALIDGHCVNGNIDRAFQLLKEMDNA 491
Query: 603 NMYVDKLMYKS 613
+ D++ + +
Sbjct: 492 KVVPDEVTFNT 502
>gi|255661166|gb|ACU25752.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 426
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + + N L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|255661148|gb|ACU25743.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 425
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + + N L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 104/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL I+ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic [Vitis vinifera]
Length = 869
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 115/270 (42%), Gaps = 22/270 (8%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF-LEAAHDILD 404
+ LIN Y ++G+ LL +KKE S T + VI++ + G E +
Sbjct: 183 SFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTY-NTVINSCARGGLDWEELLGLFA 241
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
M G D TY +LL+A + + EAE + + M + ++ +++ + E F +
Sbjct: 242 QMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGK-- 299
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
+++ + L++EM + I N + + I +A+ ++R+
Sbjct: 300 ------------LNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQ 347
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNF 583
MQ P T+ L+ + Y D+ L+ ++K N E Y L+ F
Sbjct: 348 MQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAAT-----YNILINVF 402
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+GGYF+ V+ + M ++N+ + Y+
Sbjct: 403 GEGGYFKEVVTLFHDMVEENVEPNMETYEG 432
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 28/268 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I L + G LE +I D+M G ++ +L+ AY + ++ + LL +M+K
Sbjct: 152 MIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKK-- 209
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ +S ++ ++ V + A +D +L L +MR E + I N +
Sbjct: 210 --ERVSPSILT---YNTVINSCA-----RGGLDWEELL-GLFAQMRHEGIQADIVTYN-T 257
Query: 506 IYFFCKGKMIGD-ALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
+ C + +GD A ++R M E I P + T+ YLV L ++ ++ + +
Sbjct: 258 LLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVS----ELLKEM 313
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK---SEFLKHHKH 621
ESG Y LL Q G + M V M+ + Y + + +H ++
Sbjct: 314 ESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRY 373
Query: 622 -----LYRRLKVSNARTEAQSKR-LVNV 643
L+ +KVSN A + L+NV
Sbjct: 374 DDVRDLFLEMKVSNTEPNAATYNILINV 401
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 126/298 (42%), Gaps = 29/298 (9%)
Query: 328 GKQELVLFRN---GKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCS 384
G + ++FR G +L + L+ + K + ++S LL ++ SF + T +
Sbjct: 268 GDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMES-GGSFPDITSYN 326
Query: 385 DVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
+++A Q G ++ A + M+ AG ++ TY LL Y + + + L +M+ S
Sbjct: 327 VLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVS 386
Query: 445 CLVQNLSCEMVVSERFSE------------------VADKSASFTDTSSLMDKSDL---A 483
N + ++ F E V ++ K L A
Sbjct: 387 NTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDA 446
Query: 484 ESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ ++ M E+ + + I + + + +AL + M E+ +PTVET+ L+
Sbjct: 447 KKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQM 506
Query: 544 HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
+ +Y++ + + + +SGV A +RD + ++ F QGG FE ++ M+K
Sbjct: 507 FAKGGLYKESEAI---LLKMGQSGV-ARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEK 560
>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 4/143 (2%)
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
S D SL D + E +E+ L T++ NS I F M+ + L ++RRM+E
Sbjct: 160 SLIDVLSLSSDFDRVRCIFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKES 219
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588
I P++ TF +L+ G + ++ +E G + Y T++ + + G
Sbjct: 220 GIEPSLYTFNFLLNGLVNSMFIESAERVF----EVMECGKIGPDVVSYNTMIKGYCKAGN 275
Query: 589 FERVMEVIGYMKKQNMYVDKLMY 611
++ ME M+K+N+ DK+ Y
Sbjct: 276 TKKAMEKFTDMEKRNLEPDKITY 298
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 15/198 (7%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
A + +I G K G+ E S + ++ K+ + + +IDA + G + A ++ +
Sbjct: 332 AYSLVIGGLCKDGRTVEGSSVFENMNKKGCK-ANVAIYTALIDAYGKNGNVNEAINLFER 390
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD 465
M+ G D TY ++ K EA + + + E+ V+ F
Sbjct: 391 MKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDN--------EVAVNAMFY---- 438
Query: 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+S D + D AE +EM E Y N+ I K + +AL +++RM
Sbjct: 439 --SSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRM 496
Query: 526 QEMKIRPTVETFYYLVYG 543
++ TV T+ L+ G
Sbjct: 497 EKEGCDQTVYTYTILISG 514
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 110/264 (41%), Gaps = 19/264 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
LI+G KHG+ + LL ++K+ + + +++ + + G +E A ++ +ME
Sbjct: 472 GALIDGLCKHGELDTANELLDEMRKKGLQLN-VCIYNSMVNGICKAGNIEQAIKLMKEME 530
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
+AG D+ TY +++ AY ++ +A LL++M L + V+ F +
Sbjct: 531 VAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLG--- 587
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+++ D L+ M E+ + N+ + C + KIY+RM+
Sbjct: 588 --------MLEDGD---RLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRN 636
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
+ P T+ L+ GH R++ W K IE G + Y L+ F +
Sbjct: 637 QGVAPDSNTYNILIKGHCKA---RNLKEAWFLYKEMIEKGYVPTVTS-YNALIKRFYKKK 692
Query: 588 YFERVMEVIGYMKKQNMYVDKLMY 611
E+ M+ + D +Y
Sbjct: 693 KILEARELFEEMRGHGLVADGEIY 716
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/254 (19%), Positives = 105/254 (41%), Gaps = 31/254 (12%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S VID LG L+ A ++DDM++ G + TY S++ K+ EAE +L++M
Sbjct: 297 STVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMS 356
Query: 444 SCLVQN-------------LSCEMVVSERFSEVADK--SASFTDTSSLMD------KSDL 482
++ + L ++ F E+ K S + ++L+ K
Sbjct: 357 QKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIE 416
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
++L EM + I +CK + +A ++ M +M + P + T+ L+
Sbjct: 417 PQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALID 476
Query: 543 G---HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
G H L+ ++ + L ++ +Y +++ + G E+ ++++ M
Sbjct: 477 GLCKHGELDTANELL-------DEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM 529
Query: 600 KKQNMYVDKLMYKS 613
+ + D + Y +
Sbjct: 530 EVAGIDPDAITYTT 543
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 50/267 (18%), Positives = 105/267 (39%), Gaps = 36/267 (13%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
++ + + +I +LG + A+ D+M D TY +L+ + + E + L
Sbjct: 362 DNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLF 421
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS------------------ 480
+M + + L + V +V K+ + SL ++
Sbjct: 422 HEM----ISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDG 477
Query: 481 -------DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT 533
D A L+ EMR++ + NS + CK I A+K+ + M+ I P
Sbjct: 478 LCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPD 537
Query: 534 VETFYYLVYGHSSL-EMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
T+ ++ + L ++ + +L + R ++ V+ + L+ F G E
Sbjct: 538 AITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVT-----FNVLMNGFCMLGMLEDG 592
Query: 593 MEVIGYMKKQNMYVDKLMYKSEFLKHH 619
++G+M ++ + D + Y + +K H
Sbjct: 593 DRLLGWMLEKGIVPDAITYNT-LMKQH 618
>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Vitis vinifera]
Length = 939
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 113/268 (42%), Gaps = 26/268 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCS--DVIDALIQLGFLEAAHDILDDME 407
++N + K GK E + +KK + E + + +I+ + LG +EAA +L M
Sbjct: 232 MVNAFCKDGKVDEAAGF---VKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMS 288
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G + TY L+ Y K EAE +L+ M++ +V ER V
Sbjct: 289 EKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQE-------EAALVPDERAYGV---- 337
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
D K D A L+ EM + ++ NS I +CK I +A + RM +
Sbjct: 338 --LIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD 395
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGD--IKRNIESGVLAVSRDLYETLLLNFLQ 585
++P ++ L+ G+ E + D ++ IE VL Y TLL +
Sbjct: 396 WNLKPDSYSYNTLLDGYCR-EGHTSEAFNLCDKMLQEGIEPTVLT-----YNTLLKGLCR 449
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G F+ +++ M K+ + D++ Y +
Sbjct: 450 VGAFDDALQIWHLMMKRGVAPDEVGYST 477
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 107/264 (40%), Gaps = 18/264 (6%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI GY K K E +L +++E + +ID + G ++ A +LD+M
Sbjct: 302 LIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRL 361
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + SL+ Y K EAE ++ +M + NL + S ++ + D
Sbjct: 362 GLKTNLFICNSLINGYCKRGEIHEAEGVITRM----VDWNLKPD---SYSYNTLLDGYCR 414
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
TS A +L +M +E T+ N+ + C+ DAL+I+ M +
Sbjct: 415 EGHTSE-------AFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRG 467
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
+ P + L+ G +E + + LW DI + G SR + T++ + G
Sbjct: 468 VAPDEVGYSTLLDGLFKMENFEGASTLWKDI---LARG-FTKSRITFNTMISGLCKMGKM 523
Query: 590 ERVMEVIGYMKKQNMYVDKLMYKS 613
E+ MK D + Y++
Sbjct: 524 VEAEEIFDKMKDLGCSPDGITYRT 547
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 114/277 (41%), Gaps = 43/277 (15%)
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLS------IKKEHHSFGEST------ 381
L+R G++ +N M K+++ HG + L S I+K S ES
Sbjct: 657 LYRLGRIDEANLLMQKMVD----HGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLP 712
Query: 382 ---LCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
+ + I L + G ++ A + L G D+ TY +L+ Y EA L
Sbjct: 713 NNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLR 772
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST 498
+M + LV N+ V KS + D A+ L ++ ++
Sbjct: 773 DEMLRRGLVPNI----VTYNALINGLCKS----------ENVDRAQRLFHKLHQKGLFPN 818
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEMYRDITI 555
+ N+ I +CK + A K+ +M E I P+V T+ L+ G H +E R + +
Sbjct: 819 VVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIE--RSMKL 876
Query: 556 LWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
L IK ++S ++ Y TL+ +++ G +++
Sbjct: 877 LNQMIKAGVDSKLIE-----YCTLVQGYIRSGEMQKI 908
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 72/373 (19%), Positives = 146/373 (39%), Gaps = 45/373 (12%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
++P+ + ++ +++ V G + +++ MS+ GV + + +L + + C+ DE +
Sbjct: 257 VEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAE 316
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDA 292
K + + + ++ Y L+ + + ID A L+ +M LR
Sbjct: 317 KVLRGMQEEAALVPD--ERAYGVLIDGYCRTGKIDDAVRLLDEM-----------LRLGL 363
Query: 293 QKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLIN 352
+ I N C ++ I + EG ++ N L + + L++
Sbjct: 364 KTNLFICNSLINGYC-----------KRGEIHEAEGVITRMVDWN--LKPDSYSYNTLLD 410
Query: 353 GYKKHGKNSELSWLLLSIKKEHHSFGESTLCS--DVIDALIQLGFLEAAHDILDDMELAG 410
GY + G SE L + +E E T+ + ++ L ++G + A I M G
Sbjct: 411 GYCREGHTSEAFNLCDKMLQEGI---EPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRG 467
Query: 411 HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASF 470
D Y +LL +K++ F A L K +++ F++ +
Sbjct: 468 VAPDEVGYSTLLDGLFKMENFEGASTLWKD--------------ILARGFTKSRITFNTM 513
Query: 471 TDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI 530
M K AE + +M++ + I +CK +G A K+ M+ I
Sbjct: 514 ISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPI 573
Query: 531 RPTVETFYYLVYG 543
P++E + L+ G
Sbjct: 574 SPSIEMYNSLISG 586
>gi|255661146|gb|ACU25742.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 426
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + + N L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 104/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL I+ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|255661162|gb|ACU25750.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 426
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + + N L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
Length = 1041
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 28/223 (12%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGEST---LCSDVIDALIQLGFLEAAHDI 402
A LI+G+ + G + E +K+E + G + ++ + + G +E A +
Sbjct: 343 AYTALIDGFMRQGDSGEA----FRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADAL 398
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVSE--R 459
L++M + G D+ TY +++ Y K + + LL +M+KS LV +C M+++ R
Sbjct: 399 LNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCR 458
Query: 460 FSEVADKSASFTDTSSLMDKSD------LAESLIQEMREEAALSTIYKL----------- 502
+ D S F SL K + L + +QE R + A+ + +
Sbjct: 459 HGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLC 518
Query: 503 -NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
NS I CK + + +A M E ++P V T+ L++G+
Sbjct: 519 YNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGY 561
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 118/310 (38%), Gaps = 42/310 (13%)
Query: 335 FRNGKL----LHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDAL 390
F NG L LH LIN + + G E LL ++++ S T + VI L
Sbjct: 223 FYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTY-NVVIGGL 281
Query: 391 IQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
+ G ++ A ++ M+ G D TY L+ + K K EA+ +L++M L
Sbjct: 282 CRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGH 341
Query: 451 SCEMVVSERFSEVADKSASFTDTSSLMDKS---------------------DLAESLIQE 489
+ + F D +F ++ + + A++L+ E
Sbjct: 342 VAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNE 401
Query: 490 MREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSS 546
M N+ I + K + + M++ + PT T ++ G H S
Sbjct: 402 MIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGS 461
Query: 547 LEMYRDITILWGDIKRNIESGV-LAVSRD--LYETLLLNFLQGGYFERVMEVIGYMKKQN 603
+E D R E V L V + +Y TL+ +Q G F+ + ++ M K+
Sbjct: 462 IE----------DASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKG 511
Query: 604 MYVDKLMYKS 613
+ D L Y S
Sbjct: 512 VQPDVLCYNS 521
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 24/200 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LING K G+ L I + + T + +ID + G L A + D+M L
Sbjct: 697 LINGLCKAGEIERARELFDGIPGKGLAHNAVTYAT-IIDGYCKSGNLSKAFRLFDEMTLK 755
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA- 468
G P DS Y +L+ K +A +L + V + F+ + +A
Sbjct: 756 GVPPDSFVYSALIDGCRKEGNTEKALSLFLES--------------VQKGFASTSSLNAL 801
Query: 469 --SFTDTSSLMDKSDLAESLI-QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
F + +++ + L E ++ + ++ + TI I + CK + +A + + M
Sbjct: 802 MDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTIL-----IDYHCKTGFLKEAEQFFVDM 856
Query: 526 QEMKIRPTVETFYYLVYGHS 545
Q+ + P T+ L+ G++
Sbjct: 857 QKRNLMPNALTYTALLSGYN 876
>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
Length = 1060
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 104/251 (41%), Gaps = 12/251 (4%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+GY K G N E + + S E S +ID + G +EAA + +M +
Sbjct: 409 LIDGYCKEG-NMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIK 467
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN---LSCEMVVSERFSEVADK 466
G D Y +L+ ++K +EA L K+M+++ L N LSC + + ++D
Sbjct: 468 GLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDA 527
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
F + +D S E+ + I C I A K + M+
Sbjct: 528 IKLFLAKTG----TDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMR 583
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
+RP V T ++ GH RD+ +L DI ++ G++ S +Y L + +
Sbjct: 584 CSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADI---LKMGIIPNS-SVYRVLAKGYEES 639
Query: 587 GYFERVMEVIG 597
GY + + G
Sbjct: 640 GYLKSALSFCG 650
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 34/171 (19%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ V+D L++ G + + DM G + TY +L+ + F +A L +M
Sbjct: 161 CNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMI 220
Query: 443 K----------SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE 492
+ + L++ L E +SE AES+ + MR
Sbjct: 221 EKKIFPTVVIYTILIRGLCGESRISE------------------------AESMFRTMRN 256
Query: 493 EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
L +Y N+ + +CK + AL++Y M + P V TF L+ G
Sbjct: 257 SGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDG 307
Score = 45.8 bits (107), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 14/159 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID L + + +A L DM G + Y L+ Y K EA +L ++ K
Sbjct: 304 LIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE 363
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
++ ++ ++ + V D+ + A+ L+QEM+++ L N+
Sbjct: 364 ILPDVFTYSILIKGLCGV--------------DRMEEADGLLQEMKKKGFLPNAVTYNTL 409
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
I +CK + A+++ +M E I P + TF L+ G+
Sbjct: 410 IDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGY 448
>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 665
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 108/260 (41%), Gaps = 30/260 (11%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHS---FGESTLCSDVIDALIQLGFLEAAHDILD 404
KLI + G+ S+ + +L + + F +TL + + G L+AA ++
Sbjct: 74 TKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTL----VAGYCRYGRLDAARRLIA 129
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEV 463
M + P D+ TY L+ +A +LL M R+ C +V E
Sbjct: 130 SMPV---PPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPS-----VVTYTVLLEA 181
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
KS+ F ++D EMR + I N I C+ + DA +I
Sbjct: 182 VCKSSGFGQAMKVLD----------EMRAKGCTPNIVTYNVIINGMCREDRVDDARQILN 231
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNF 583
R+ +P ++ ++ G + + + D+ +L+ ++ +E+ + + ++ L+ F
Sbjct: 232 RLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEM---VENNCVP-NEVTFDMLVRFF 287
Query: 584 LQGGYFERVMEVIGYMKKQN 603
+GG ER +EV+ M +
Sbjct: 288 CRGGMVERAIEVLDRMSEHG 307
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 112/258 (43%), Gaps = 23/258 (8%)
Query: 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST 416
G E + +L EH +TLC+ VI+++ + G ++ A + L++M G D+
Sbjct: 289 RGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTI 348
Query: 417 TYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSS 475
+Y ++L + + +A+ LL +M RK+C E+ + + K
Sbjct: 349 SYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPN----EVTFNTFICILCQK--------G 396
Query: 476 LMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVE 535
L+D++ L LI++M E I N+ + FC + AL+++ + P
Sbjct: 397 LIDQAIL---LIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELF---NSLPCEPNTI 450
Query: 536 TFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEV 595
T+ L+ G E L ++ +N + + V+ + L+ F Q G+ E +E+
Sbjct: 451 TYTTLLTGLCHAERLDAAAELLAEMMQN-DCPLNVVT---FNVLVSFFCQKGFVEEAIEL 506
Query: 596 IGYMKKQNMYVDKLMYKS 613
+ M + + + + +
Sbjct: 507 VQQMMEHGCTPNLITFNT 524
>gi|255661156|gb|ACU25747.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 426
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + + N L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNXMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 103/247 (41%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL I+ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNXMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Brachypodium distachyon]
Length = 858
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 21/172 (12%)
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL 446
IDA+ + G +E A +L DME + TY +L+ Y K++ + EA L ++M+ +
Sbjct: 346 IDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGI 405
Query: 447 VQNLSCEMVV------SERFSEVA------DKSASFTDT---SSLMD------KSDLAES 485
+ C V + ++ E+A + S DT +SL++ + D+
Sbjct: 406 QLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSF 465
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
L+Q+MR ++ ++ I + K M GDA +Y +E ++P V F
Sbjct: 466 LVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLF 517
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 20/240 (8%)
Query: 376 SFGESTLC-SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKM-FRE 433
+G + S +I A + G + A +L+ M+ AG + TY +++ A K + R
Sbjct: 228 GYGNTVFANSALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRF 287
Query: 434 AEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE 493
+QM + +R S S + A +L EM
Sbjct: 288 TLGYFRQMLR--------------DRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHL 333
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI 553
IY N+ I CK I A+++ M+ ++P V T+ L+ G+S LE Y +
Sbjct: 334 GIGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEA 393
Query: 554 TILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
L+ +K S + + R Y T+L +++ G + + V M+ + D + Y S
Sbjct: 394 LKLYEKMK----SLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNS 449
Score = 38.9 bits (89), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 86/212 (40%), Gaps = 16/212 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMEL 408
LINGY K G+ +S+L+ +++ S L S +ID + G A ++ D +
Sbjct: 450 LINGYGKQGRLDIVSFLVQDMRR--RGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKE 507
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
+G D + S + K + A +LL M + + N+ + + F + S
Sbjct: 508 SGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDAFGKSKVLSE 567
Query: 469 SFTDTSSLMDKSDLAESLIQE----MREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
+ + +I+ R +A+ + + +YF L+++++
Sbjct: 568 EDPEAGEMGIVGVYNGQIIRAANPVTRGRSAIDVRMRRSQELYFI---------LELFQK 618
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
M + +RP V TF ++ S + D +L
Sbjct: 619 MVQQGVRPNVVTFSAILNACSRCNNFEDAALL 650
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 99/474 (20%), Positives = 198/474 (41%), Gaps = 57/474 (12%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD--AHSIIILAQIHEMNCQRDE 230
+KP+ ++ ++ A V+ ++++M GV+ D ++ +I+ C+ +
Sbjct: 482 VKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGL-----CRAKK 536
Query: 231 LKKFKCYIDQLS----TPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNP 286
+++ K + + P AH Y F ++L+ K +I A DM +PN
Sbjct: 537 VEEAKMLLVDMGEKGIKPNAHTYGAF----INLYSKSGEIQVAERYFKDM-LSSGIVPNN 591
Query: 287 KLRQDAQKPYLISIGSP-----NLRCGLKLQIMPELLEKDSI---LKMEGKQELVLFRNG 338
+ K + +G+ +C L+ ++P++ +I L GK + +
Sbjct: 592 VIYTILIKGH-CDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFL 650
Query: 339 KLLHSNRA-----MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQ 392
K L + LI+G+ K G + S L + H+ + + + +I+ L +
Sbjct: 651 KFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEML--HNGINPNIVVYNTLINGLCK 708
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
LG + A ++ D++E D TY +++ Y K EA L +M
Sbjct: 709 LGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEM----------- 757
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
+S+ S D + A SL E +++ ++ ++ NS I FCK
Sbjct: 758 ---ISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQK-SVGSLSAFNSLIDSFCKH 813
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAV 571
+ +A +++ M + K+ P + T+ L+ + EM + L+ D++ RNI L
Sbjct: 814 GKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLT- 872
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY---KSEFLKHHKHL 622
Y +LLL++ Q G +++ + M+ + + D + Y S + K K L
Sbjct: 873 ----YTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSL 922
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 131/629 (20%), Positives = 243/629 (38%), Gaps = 111/629 (17%)
Query: 31 KNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLK-IQKG-KA 88
K+H + +A E + + P + I+ LC+S++ LQKA +++ + I+ G K
Sbjct: 428 KSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSD---LQKANEVLDQMIRNGVKP 484
Query: 89 DLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLP---CSDLLLLVFVHMVKTEIGT 145
++ L K + +R +M + +L++M+ LP C + L+ IG
Sbjct: 485 NVFMYGTLIKAYVQESRYEMAIE---LLKIMIANGVLPDLFCYNCLI----------IGL 531
Query: 146 CLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQ 205
C A ++ + L EK IKP+ + ++ + G + + M
Sbjct: 532 CRAKK--VEEAKMLLVDMGEKG-----IKPNAHTYGAFINLYSKSGEIQVAERYFKDMLS 584
Query: 206 TGVVADAHSIIILAQIH-EMNCQRDELKKFKCYIDQLSTPFAHHYQQ------------- 251
+G+V + IL + H ++ + L FKC +++ P Y
Sbjct: 585 SGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKE 644
Query: 252 ------------------FYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQ 293
Y SL+S K DI+ A +L Y E L N
Sbjct: 645 AMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQL------YDEMLHN------GI 692
Query: 294 KPYLISIGS-PNLRCGL-----KLQIMPELLEKDSILKMEGKQELV--LFRNGKLLHSNR 345
P ++ + N C L ++ E+ EKD + + ++ ++G L + +
Sbjct: 693 NPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFK 752
Query: 346 AMAKLI------NGY------KKHGKNSELSWLL-LSIKKEHHSFGESTLCSDVIDALIQ 392
++I +GY GK L L L + + S G + + +ID+ +
Sbjct: 753 LFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCK 812
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
G + A ++ DDM + TY L+ AY K +M EAE L M ++ N
Sbjct: 813 HGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLT 872
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
+ ++++ ++ F S D E R A + Y + +S Y CK
Sbjct: 873 YTSLLLSYNQIGNR---FKMISLFKD---------MEARGIACDAIAYGVMASAY--CKE 918
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVS 572
+ALK+ + I+ + F L++ + + L ++ + L++S
Sbjct: 919 GKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKE----ELSLS 974
Query: 573 RDLYETLLLNFLQGGYFERVMEVIGYMKK 601
TLLL F + G + +V+G M++
Sbjct: 975 SKTCNTLLLGFYKSGNEDEASKVLGVMQR 1003
Score = 42.0 bits (97), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 90/223 (40%), Gaps = 31/223 (13%)
Query: 341 LHSNR-AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFL 396
L+ NR LI+G+ K G E L IK E + G + +I + + G +
Sbjct: 342 LNPNRFTYTALIDGFIKEGNIEEA----LRIKDEMITRGLKLNVVTYNAMIGGIAKAGEM 397
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK----------SCL 446
A + ++M +AG D+ TY L+ Y K +A LL +M+ S L
Sbjct: 398 AKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVL 457
Query: 447 VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAA----------- 495
+ L C ++ +EV D+ ++ L ++ +QE R E A
Sbjct: 458 ISGL-CHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANG 516
Query: 496 -LSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
L ++ N I C+ K + +A + M E I+P T+
Sbjct: 517 VLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTY 559
>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
Length = 528
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 107/252 (42%), Gaps = 29/252 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDM-ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
VI G ++AA DI+ +M E G + TY ++++ + KV EA + +M
Sbjct: 151 VIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTK 210
Query: 445 -----------------CLVQNLSCEMVVSERFSE--VADKSASFT--DTSSLMD-KSDL 482
C L ++ +R E VA A++ + MD +
Sbjct: 211 GEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTE 270
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A L++EM + ++ N I CK + AL+I+ M +R TV T+ L+Y
Sbjct: 271 AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIY 330
Query: 543 GHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
S ++ L+ + ++R I ++ LY L+ + G +R E++G M+K
Sbjct: 331 ALSKKGQVQETDKLFDEAVRRGIRPDLV-----LYNALINSHSTSGNIDRAFEIMGEMEK 385
Query: 602 QNMYVDKLMYKS 613
+ + D + Y +
Sbjct: 386 KRIAPDDVTYNT 397
>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74850, chloroplastic; AltName: Full=Protein PLASTID
TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
Length = 862
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 114/268 (42%), Gaps = 26/268 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGF-LEAAHDILDDME 407
LIN Y ++G+ LL +K E S S L + VI+A + G E + +M
Sbjct: 182 LINAYGRNGRYETSLELLDRMKNEKIS--PSILTYNTVINACARGGLDWEGLLGLFAEMR 239
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY +LL+A + EAE + + M +V +L+ + E F +
Sbjct: 240 HEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGK----- 294
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ + + L+ EM +L I N + + K I +A+ ++ +MQ
Sbjct: 295 ---------LRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQA 345
Query: 528 MKIRPTVETFYYLV--YGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ 585
P T+ L+ +G S Y D+ L+ ++K + A Y L+ F +
Sbjct: 346 AGCTPNANTYSVLLNLFGQSG--RYDDVRQLFLEMKSSNTDPDAAT----YNILIEVFGE 399
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
GGYF+ V+ + M ++N+ D Y+
Sbjct: 400 GGYFKEVVTLFHDMVEENIEPDMETYEG 427
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 102/277 (36%), Gaps = 60/277 (21%)
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
T S +++ +L LE D+L +M G D T+Y LL AY K +EA + Q
Sbjct: 283 TTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQ 342
Query: 441 MRKSCLVQNLSCEMVVSERFSEVA---DKSASFTDTSSLMDKSDLAE------------- 484
M+ + N + V+ F + D F + S D A
Sbjct: 343 MQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGY 402
Query: 485 -----SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI------------------ 521
+L +M EE + I+ KG + DA KI
Sbjct: 403 FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTG 462
Query: 522 -----------------YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
+ M E+ P++ETF+ L+Y + + ++ + + R +
Sbjct: 463 VIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAI---LSRLV 519
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
+SG+ +RD + + + QGG FE ++ M+K
Sbjct: 520 DSGI-PRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEK 555
>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 113/268 (42%), Gaps = 26/268 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCS--DVIDALIQLGFLEAAHDILDDME 407
++N + K GK E + +KK + E + + +I+ + LG +EAA +L M
Sbjct: 198 MVNAFCKDGKVDEAAGF---VKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMS 254
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G + TY L+ Y K EAE +L+ M++ +V ER V
Sbjct: 255 EKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQE-------EAALVPDERAYGV---- 303
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
D K D A L+ EM + ++ NS I +CK I +A + RM +
Sbjct: 304 --LIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD 361
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGD--IKRNIESGVLAVSRDLYETLLLNFLQ 585
++P ++ L+ G+ E + D ++ IE VL Y TLL +
Sbjct: 362 WNLKPDSYSYNTLLDGYCR-EGHTSEAFNLCDKMLQEGIEPTVLT-----YNTLLKGLCR 415
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G F+ +++ M K+ + D++ Y +
Sbjct: 416 VGAFDDALQIWHLMMKRGVAPDEVGYST 443
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 107/264 (40%), Gaps = 18/264 (6%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI GY K K E +L +++E + +ID + G ++ A +LD+M
Sbjct: 268 LIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRL 327
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + SL+ Y K EAE ++ +M + NL + S ++ + D
Sbjct: 328 GLKTNLFICNSLINGYCKRGEIHEAEGVITRM----VDWNLKPD---SYSYNTLLDGYCR 380
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
TS A +L +M +E T+ N+ + C+ DAL+I+ M +
Sbjct: 381 EGHTSE-------AFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRG 433
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
+ P + L+ G +E + + LW DI + G SR + T++ + G
Sbjct: 434 VAPDEVGYSTLLDGLFKMENFEGASTLWKDI---LARG-FTKSRITFNTMISGLCKMGKM 489
Query: 590 ERVMEVIGYMKKQNMYVDKLMYKS 613
E+ MK D + Y++
Sbjct: 490 VEAEEIFDKMKDLGCSPDGITYRT 513
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 72/373 (19%), Positives = 146/373 (39%), Gaps = 45/373 (12%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
++P+ + ++ +++ V G + +++ MS+ GV + + +L + + C+ DE +
Sbjct: 223 VEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAE 282
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDA 292
K + + + ++ Y L+ + + ID A L+ +M LR
Sbjct: 283 KVLRGMQEEAALVPD--ERAYGVLIDGYCRTGKIDDAVRLLDEM-----------LRLGL 329
Query: 293 QKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLIN 352
+ I N C ++ I + EG ++ N L + + L++
Sbjct: 330 KTNLFICNSLINGYC-----------KRGEIHEAEGVITRMVDWN--LKPDSYSYNTLLD 376
Query: 353 GYKKHGKNSELSWLLLSIKKEHHSFGESTLCS--DVIDALIQLGFLEAAHDILDDMELAG 410
GY + G SE L + +E E T+ + ++ L ++G + A I M G
Sbjct: 377 GYCREGHTSEAFNLCDKMLQEGI---EPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRG 433
Query: 411 HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASF 470
D Y +LL +K++ F A L K +++ F++ +
Sbjct: 434 VAPDEVGYSTLLDGLFKMENFEGASTLWKD--------------ILARGFTKSRITFNTM 479
Query: 471 TDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI 530
M K AE + +M++ + I +CK +G A K+ M+ I
Sbjct: 480 ISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPI 539
Query: 531 RPTVETFYYLVYG 543
P++E + L+ G
Sbjct: 540 SPSIEMYNSLISG 552
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 105/248 (42%), Gaps = 27/248 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+ L + G A +LD+M G D+ TY LL + +AE + +M
Sbjct: 173 IINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQG 232
Query: 446 LVQNL-------------SCEMVVSERFSEVADKSASFTDT------SSLMDKSDLAESL 486
+V +L C + F ++ + + + ++E+L
Sbjct: 233 VVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEAL 292
Query: 487 I--QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
EM E+ + + N+ + CK KM+ +A +++ M E + P TF L+ G+
Sbjct: 293 KVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGY 352
Query: 545 S-SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
S M + +T+ I+RN++ V+ Y TL+ F +G E+V E+ M +
Sbjct: 353 SKDGNMNKAVTLFEMMIQRNLKPDVVT-----YNTLIDGFCKGSEMEKVNELWNDMISRR 407
Query: 604 MYVDKLMY 611
+Y + + Y
Sbjct: 408 IYPNHISY 415
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/229 (18%), Positives = 97/229 (42%), Gaps = 20/229 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I + G + A + D+M G +D TY ++L K KM EA+ L +M +
Sbjct: 278 LIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERG 337
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ + + +S+ + + + T L E +IQ + ++ N+
Sbjct: 338 VFPDFYTFTTLINGYSKDGNMNKAVT----------LFEMMIQRNLKPDVVT----YNTL 383
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNI 564
I FCKG + +++ M +I P ++ L+ G+ ++ + LW + +++
Sbjct: 384 IDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGF 443
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ ++ + T++ + + G + E + M + + D + Y +
Sbjct: 444 EATIITCN-----TIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNT 487
>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 543
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 92/230 (40%), Gaps = 21/230 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI +L Q GF+ A +L M G D TY S++ K + EA LLK++
Sbjct: 306 VITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEM 365
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS--DLAESLIQEMREEAALSTIYKLN 503
+ +N + D+ T +SL K D A ++ EM E + I N
Sbjct: 366 VSKNC------------IPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYN 413
Query: 504 SSI-YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS-SLEMYRDITILWGDIK 561
+ F CK +AL + M + P T+ L +G S EM R I +
Sbjct: 414 CIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMF----- 468
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
R +++ L+ + LY +LL + + ++ YM D+ Y
Sbjct: 469 RRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTY 518
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 111/285 (38%), Gaps = 27/285 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++NGY + G ++ S+ +F + L I AL G + A + DDM
Sbjct: 134 MVNGYCRAGNIDAARRMIDSVPFAPDTFTYNPL----IRALCVRGCVLDALAVFDDMLHR 189
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSC---------LVQNLSCEMVVSER 459
G TY LL A K +++A LL +MR K C L+ + + V E
Sbjct: 190 GCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEA 249
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL------------NSSIY 507
+V + S+ + + + +SL R E A + K+ N+ I
Sbjct: 250 L-KVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVIT 308
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESG 567
C+ +G A K+ +M E P + T+ ++ G + L ++ + S
Sbjct: 309 SLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSK 368
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
+ + T++ + Q G F+R ++V+ M + D Y
Sbjct: 369 NCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYN 413
>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 94/197 (47%), Gaps = 14/197 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSF-GESTLCSDVIDALIQLGFLEAAHDILDDM 406
LING K G+ ++ LL K E HS + + + +I++L + L A D+ +M
Sbjct: 167 GTLINGLCKAGETKAVARLLR--KLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEM 224
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ G D TY +L+ + + +EA +LL +M+ ++N++ ++ FS + D
Sbjct: 225 IVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMK----LKNINPDVYT---FSVLIDA 277
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ D A SL +EM+ + + I NS I CK + A+ + + M+
Sbjct: 278 LGKEGKKKMV----DEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMK 333
Query: 527 EMKIRPTVETFYYLVYG 543
E I+P V ++ L+ G
Sbjct: 334 EHGIQPDVYSYTILLDG 350
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
L++++ + + N+ I CK K++GDA +Y M I P V T+ L++G
Sbjct: 185 LLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFC 244
Query: 546 SLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFL----QGGYFERVMEVIGYMK 600
+ ++ L ++K +NI V S +L++ L + + M + MK
Sbjct: 245 IMGKMKEAFSLLNEMKLKNINPDVYTFS------VLIDALGKEGKKKMVDEAMSLFEEMK 298
Query: 601 KQNMYVDKLMYKS 613
+NM D + Y S
Sbjct: 299 HKNMIPDIVTYNS 311
>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
Length = 1205
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 136/332 (40%), Gaps = 34/332 (10%)
Query: 309 LKLQIMPELLEKDSILK---MEGKQELVLFRNGKLLH-----SNRAMAKLINGYKKHGKN 360
LK P+ + ++++K ++G+ + L + KLL + + LING K G
Sbjct: 121 LKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDT 180
Query: 361 SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS 420
LL I + + S +IDAL + + A+ + +M + G D TY +
Sbjct: 181 RAAIKLLQKIDGRL-TKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYST 239
Query: 421 LLTAYYKVKMFREAEALLKQM----------RKSCLVQNLSCEMVVSERFSEVAD--KSA 468
L+ + +EA LL +M + LV L E V E S +A K+
Sbjct: 240 LIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC 299
Query: 469 SFTDT---SSLMDKSDL------AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
D S+LMD L A+ + M ++ I FCK KM+ +AL
Sbjct: 300 VKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEAL 359
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETL 579
+++ M + + P + T+ L+ G L I +W I + G A + Y +L
Sbjct: 360 NLFKEMHQKNMVPGIVTYSSLIDG---LCKSGRIPYVWDLIDEMHDRGQPA-NVITYSSL 415
Query: 580 LLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ + G+ +R + + MK Q + + +
Sbjct: 416 IDGLCKNGHLDRAIALFNKMKDQGIRPNTFTF 447
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 14/160 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S ++D + ++ A + + M L G D TY L+ + K KM EA L K+M +
Sbjct: 308 STLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQ 367
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+V + +S + D + D LI EM + + + +
Sbjct: 368 KNMVPGIVT-------YSSLIDGLCKSGRIPYVWD-------LIDEMHDRGQPANVITYS 413
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
S I CK + A+ ++ +M++ IRP TF L+ G
Sbjct: 414 SLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDG 453
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 15/192 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LING+ K+ E L + +++ G T S +ID L + G + D++D+M
Sbjct: 345 LINGFCKNKMVDEALNLFKEMHQKNMVPGIVTY-SSLIDGLCKSGRIPYVWDLIDEMHDR 403
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G P + TY SL+ K A AL +M+ + N ++ + K
Sbjct: 404 GQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLC----KGGR 459
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D A+ + Q++ + +Y N I CK ++ +AL + +M++
Sbjct: 460 LKD----------AQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNG 509
Query: 530 IRPTVETFYYLV 541
P TF ++
Sbjct: 510 CIPDAVTFEIII 521
>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 545
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 113/271 (41%), Gaps = 25/271 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G+ K GK E +L + K++ T S ++D + + A + + M
Sbjct: 274 LIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNS-LMDGYCLVKQVNKAKSLFNVMAQR 332
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D +Y ++ + K+KM EA L ++M C+ + F V + S
Sbjct: 333 GVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMH---------CKQI----FPNVVTYN-S 378
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D ++ A L+ EM + S I NS + CK + A+ + +++E
Sbjct: 379 LVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKG 438
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNFLQGG 587
I+P + T+ L+ G + D ++ D+ V S ++ Y +L+ F G
Sbjct: 439 IQPDIFTYTVLINGLCKVGRLDDAQKVFEDLL------VKGYSPNIYTYTSLINGFCNKG 492
Query: 588 YFERVMEVIGYMKKQNMYVDKLMYKSEFLKH 618
+F+ + ++ MK + + Y E L H
Sbjct: 493 FFDEGLAMLSKMKDNGCIPNAITY--EILIH 521
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +I +G L+ A D+ + M + T+ L+ + K REA+ +L M K
Sbjct: 237 SSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMK 296
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+N+ ++V S D L+ + + A+SL M + ++ +
Sbjct: 297 ----KNVKLDVVTYN----------SLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYS 342
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
I FCK KM+ +A+K++ M +I P V T+ LV G
Sbjct: 343 IMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDG 382
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 510 CKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGV 568
CK K++ DA +Y M +I P V T+ L+ G + + L+ I NI V
Sbjct: 209 CKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNV 268
Query: 569 LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ L+ F + G V+ M K+N+ +D + Y S
Sbjct: 269 YT-----FSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNS 308
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 74/342 (21%), Positives = 138/342 (40%), Gaps = 62/342 (18%)
Query: 171 ELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDE 230
E IKPD FN++++A + G +G+ + ++M + G+ + + + + C E
Sbjct: 289 ENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGI---KPNFVTYNSLMDGYCLVKE 345
Query: 231 LKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQ 290
+ K K + ++ + Q Y +++ K D A L +M+R + +P+
Sbjct: 346 VNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHR-KNIIPDVVTYS 404
Query: 291 DAQKPYLISIGSPNLRCGLKLQIM---------PELLEKDSILKMEGKQELVLFRNGKLL 341
LI S + R LQ++ P + +SIL K V
Sbjct: 405 S-----LIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQV-------- 451
Query: 342 HSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHD 401
++A+A L+ +K G ++S + IK L Q G LE A
Sbjct: 452 --DKAIA-LLTKFKDKGFQPDISTYSILIK-----------------GLCQSGKLEDARK 491
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVSERF 460
+ +D+ + G+ +D Y ++ + +F EA ALL +M C+ + E+++ F
Sbjct: 492 VFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLF 551
Query: 461 SEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
+ D++D+AE L++EM Y L
Sbjct: 552 KK---------------DENDMAEKLLREMIARGLPLNFYDL 578
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 15/194 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+N + K GK E + + K+ T S ++D + + A I + M
Sbjct: 301 LVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNS-LMDGYCLVKEVNKAKSIFNTMAQG 359
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D +Y ++ + K+K F EA L K+M + ++ + VV+ +S
Sbjct: 360 GVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPD-----VVTY---------SS 405
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D S + A L+ +M + I NS + CK + A+ + + ++
Sbjct: 406 LIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKG 465
Query: 530 IRPTVETFYYLVYG 543
+P + T+ L+ G
Sbjct: 466 FQPDISTYSILIKG 479
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 21/181 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID++ ++ + A D+ +M G D TY +L++ + + ++A L +M
Sbjct: 231 IIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILEN 290
Query: 446 LVQNLSCEMVVSERFSE---------VADK------SASFTDTSSLMDKSDL------AE 484
+ ++ ++ F + V D +F +SLMD L A+
Sbjct: 291 IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAK 350
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
S+ M + I + I FCK K +A+ +++ M I P V T+ L+ G
Sbjct: 351 SIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGL 410
Query: 545 S 545
S
Sbjct: 411 S 411
>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
Length = 1037
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 112/268 (41%), Gaps = 26/268 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCS--DVIDALIQLGFLEAAHDILDDME 407
++N + K GK E + +KK + E + + +I+ + LG +EAA +L M
Sbjct: 232 MVNAFCKDGKVDEAAGF---VKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMS 288
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G + TY L+ Y K EAE +L+ M++ +V ER V
Sbjct: 289 EKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQE-------EAALVPDERAYGV---- 337
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
D K D A L+ EM + ++ NS I +CK I +A + RM +
Sbjct: 338 --LIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD 395
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGD--IKRNIESGVLAVSRDLYETLLLNFLQ 585
++P ++ L+ G+ E + D ++ IE VL Y TLL +
Sbjct: 396 WNLKPDSYSYNTLLDGYCR-EGHTSEAFNLCDKMLQEGIEPTVLT-----YNTLLKGLCR 449
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G F+ +++ M K + D++ Y +
Sbjct: 450 VGAFDDALQIWHLMMKXGVAPDEVGYST 477
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 107/264 (40%), Gaps = 18/264 (6%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI GY K K E +L +++E + +ID + G ++ A +LD+M
Sbjct: 302 LIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRL 361
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + SL+ Y K EAE ++ +M + NL + S ++ + D
Sbjct: 362 GLKTNLFICNSLINGYCKRGEIHEAEGVITRM----VDWNLKPD---SYSYNTLLDGYCR 414
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
TS A +L +M +E T+ N+ + C+ DAL+I+ M +
Sbjct: 415 EGHTSE-------AFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXG 467
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
+ P + L+ G +E + + LW DI + G SR + T++ + G
Sbjct: 468 VAPDEVGYSTLLDGLFKMENFEGASTLWKDI---LARG-FTKSRITFNTMISGLCKMGKM 523
Query: 590 ERVMEVIGYMKKQNMYVDKLMYKS 613
E+ MK D + Y++
Sbjct: 524 VEAEEIFDKMKDLGCSPDGITYRT 547
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 72/373 (19%), Positives = 146/373 (39%), Gaps = 45/373 (12%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
++P+ + ++ +++ V G + +++ MS+ GV + + +L + + C+ DE +
Sbjct: 257 VEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAE 316
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDA 292
K + + + ++ Y L+ + + ID A L+ +M LR
Sbjct: 317 KVLRGMQEEAALVPD--ERAYGVLIDGYCRTGKIDDAVRLLDEM-----------LRLGL 363
Query: 293 QKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLIN 352
+ I N C ++ I + EG ++ N L + + L++
Sbjct: 364 KTNLFICNSLINGYC-----------KRGEIHEAEGVITRMVDWN--LKPDSYSYNTLLD 410
Query: 353 GYKKHGKNSELSWLLLSIKKEHHSFGESTLCS--DVIDALIQLGFLEAAHDILDDMELAG 410
GY + G SE L + +E E T+ + ++ L ++G + A I M G
Sbjct: 411 GYCREGHTSEAFNLCDKMLQEGI---EPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXG 467
Query: 411 HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASF 470
D Y +LL +K++ F A L K +++ F++ +
Sbjct: 468 VAPDEVGYSTLLDGLFKMENFEGASTLWKD--------------ILARGFTKSRITFNTM 513
Query: 471 TDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI 530
M K AE + +M++ + I +CK +G A K+ M+ I
Sbjct: 514 ISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXI 573
Query: 531 RPTVETFYYLVYG 543
P++E + L+ G
Sbjct: 574 SPSIEMYNSLISG 586
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 111/273 (40%), Gaps = 47/273 (17%)
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLS------IKKEHHSFGEST------ 381
L+R G++ +N M K+++ HG + L S I+K S ES
Sbjct: 657 LYRLGRIDEANLLMQKMVD----HGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLP 712
Query: 382 ---LCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
+ + I L + G ++ A + L G D+ TY +L+ Y EA L
Sbjct: 713 NNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLR 772
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST 498
+M + LV N+ V KS + D A+ L ++ ++
Sbjct: 773 DEMLRRGLVPNI----VTYNALINGLCKS----------ENVDRAQRLFHKLHQKGLFPN 818
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEMYRDITI 555
+ N+ I +CK + A K+ +M E I P+V T+ L+ G H +E R + +
Sbjct: 819 VVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIE--RSMKL 876
Query: 556 LWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588
L IK ++S ++ Y TL +QGG+
Sbjct: 877 LNQMIKAGVDSKLIE-----YCTL----VQGGF 900
>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 641
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 107/248 (43%), Gaps = 22/248 (8%)
Query: 368 LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK 427
LS EH + + + +ID + + G E A+DIL M G + Y ++L
Sbjct: 271 LSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCS 330
Query: 428 VKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL 486
+ + EAE LL +M ++ C + +++ ++V F + L+D+ L
Sbjct: 331 AERWEEAEDLLAEMFQEDCPLDDVTFNILV------------DFFCQNGLVDR---VIEL 375
Query: 487 IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546
+++M E + + + I FCK ++ +A+ + + M +P ++ ++ G
Sbjct: 376 LEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCR 435
Query: 547 LEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL-QGGYFERVMEVIGYMKKQNMY 605
E + D L I I+ G L + L+NF+ + G E+ +E++ M
Sbjct: 436 AERWVDAQEL---ISHMIQQGCL--PNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCS 490
Query: 606 VDKLMYKS 613
D + Y +
Sbjct: 491 PDLISYST 498
>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 890
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 136/311 (43%), Gaps = 51/311 (16%)
Query: 338 GKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVI--DALIQLGF 395
G +HS AM I+ + ++G+ + L S+ S+G + +VI +++I G
Sbjct: 245 GSTVHSFSAM---ISAFGRNGRFPDAVDLFRSMS----SWG---VVPNVITYNSIIDAGA 294
Query: 396 L-EAAHDIL----DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
E + D++ D+M G D TY SLL+ M+ A+ LL +M C+V ++
Sbjct: 295 KGEVSFDVVVKFYDEMIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDV 354
Query: 451 SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFC 510
F+ ++ DT + DLA + +EM + + ++ + +
Sbjct: 355 ---------FT-----YNTYLDTLCKAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYA 400
Query: 511 KGKMIGDALKIYRRMQEMKIRPTV--ETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
K ++ DAL +Y +EMK+R Y + G +Y + L I++ E
Sbjct: 401 KANLLEDALNLY---EEMKLRSVCLDRVSYNTLVG-----IYEKLGNLDEAIEKCKEMER 452
Query: 569 LAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY--------KSEFLKH 618
++RD+ Y LL + + G ++ V + MK +N+Y + L Y K E +
Sbjct: 453 SGINRDVVTYNALLSGYGKHGMYDEVRRLFEEMKARNIYPNTLTYSTMIDMYTKGEMFQE 512
Query: 619 HKHLYRRLKVS 629
+YR K++
Sbjct: 513 AMDVYREFKMA 523
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 392 QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
+LG L+ A + +ME +G D TY +LL+ Y K M+ E L ++M+ +N+
Sbjct: 436 KLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEMK----ARNIY 491
Query: 452 CEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK 511
+ ++ K F + + + +A I + A + T+ CK
Sbjct: 492 PNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFYSAIIDTL----------CK 541
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
++ ++ + M E I+P V TF ++
Sbjct: 542 NGLMESSIMLLMAMMEKGIKPNVVTFNSII 571
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
Query: 481 DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
+LA L + R E ST++ ++ I F + DA+ ++R M + P V T+ +
Sbjct: 230 NLALGLFERARLEGYGSTVHSFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNSI 289
Query: 541 VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
+ + E+ D+ + + D I +G++ R Y +LL G +E +++ M
Sbjct: 290 IDAGAKGEVSFDVVVKFYD--EMIANGLMP-DRLTYNSLLSVCASKGMWEMAQKLLSEMD 346
Query: 601 KQNMYVDKLMYKS 613
+ + D Y +
Sbjct: 347 HRCIVPDVFTYNT 359
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 108/257 (42%), Gaps = 27/257 (10%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
++ + + V+ + G L AA + D+M+ G D TY +L+ + +EAE +L
Sbjct: 354 DAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVL 413
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDK------------SD----- 481
++M L + V+ + + +V + +F + ++ K SD
Sbjct: 414 QEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQ 473
Query: 482 ----LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
A L+ EM + I+ NS I CK + A++ M E ++P V T+
Sbjct: 474 GDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTY 533
Query: 538 YYLVYG-HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVI 596
++ S E+ R ++L + + I+ ++ Y L+ F G E ++
Sbjct: 534 TTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVT-----YNVLMNGFCMSGRVEGGKRLL 588
Query: 597 GYMKKQNMYVDKLMYKS 613
+M ++N++ + Y S
Sbjct: 589 EWMLEKNIHPNTTTYNS 605
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 33/201 (16%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVI------DALIQLGFLEAAHDIL 403
LI+GY K GK +E ++L+ H+ + + +V+ D L + G + AA+++L
Sbjct: 431 LIDGYCKVGKMTE-AFLV------HNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELL 483
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
+M G ++ TY SL+ K +A + M ++ L ++
Sbjct: 484 HEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVY------------ 531
Query: 464 ADKSASFTDTSSLMDKS---DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALK 520
++T + +S D A SL+QEM ++ TI N + FC + +
Sbjct: 532 -----TYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKR 586
Query: 521 IYRRMQEMKIRPTVETFYYLV 541
+ M E I P T+ L+
Sbjct: 587 LLEWMLEKNIHPNTTTYNSLM 607
>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 107/260 (41%), Gaps = 47/260 (18%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID + G + A ++ M+ G + TY L+ ++K + RE + + M++
Sbjct: 197 TTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKR 256
Query: 444 SCLVQN-LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
S +V N + ++SE + ++DK A + EMRE+ +
Sbjct: 257 SGIVPNAYAYNCLISEYCN------------GGMVDK---AFKVFAEMREKGIACGVMTY 301
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG------------------- 543
N I C+GK G+A+K+ ++ ++ + P + T+ L+ G
Sbjct: 302 NILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKS 361
Query: 544 ----------HSSLEMYRDITILWG--DIKRNIESGVLAVSRDLYETLLLNFLQGGYFER 591
++ + Y + L G D+ + +E +A S+ Y L+ F + Y E+
Sbjct: 362 SGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEK 421
Query: 592 VMEVIGYMKKQNMYVDKLMY 611
E+ M+K + D Y
Sbjct: 422 ACEMHSLMEKSGLVPDVYTY 441
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/159 (19%), Positives = 74/159 (46%), Gaps = 14/159 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+ +G ++ A + + ++ +G TY +L+ Y KV+ A L+K+M + C
Sbjct: 339 LINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC 398
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ + ++ + F+ + + + + SLM+KS L +Y +
Sbjct: 399 IAPSKVTYTILIDAFARL-NYTEKACEMHSLMEKSGLVPD-------------VYTYSVL 444
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
I+ C + +A K+++ + EM ++P + +++G+
Sbjct: 445 IHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGY 483
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 110/497 (22%), Positives = 191/497 (38%), Gaps = 67/497 (13%)
Query: 127 CSDLLLLVFVHMVKTEIGTCLASNFLI-------QLCDVFLHLSAEKSNGAELIKPDTMI 179
CSD +L F M KT + N +I +L D L NG P+
Sbjct: 212 CSDAVLH-FREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNG---FAPNVFS 267
Query: 180 FNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYID 239
+N VLH + ++E M G D ++ + C+ D++ + +D
Sbjct: 268 YNTVLHGFCKANRVENALWLLEQMVTRGCPPD---VVSYTTVINGLCKLDQVDEACRVMD 324
Query: 240 QLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLIS 299
++ Y +L+ + D+D A EL+ K+ + +P I+
Sbjct: 325 KMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELV------------RKMTERGYRPNAIT 372
Query: 300 IGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGK 359
+ IM ++ + + Q L + + +I+G+ K GK
Sbjct: 373 YNN----------IMHVFCRRNDMER--AHQVLQMMIQTGCPPDAINYSTIISGFCKAGK 420
Query: 360 NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD-DMELAGHPMDSTTY 418
E LL + + + L S +IDAL + +++A ++L + + P D Y
Sbjct: 421 LREAHDLLEQMIRRGCRPDVACL-STLIDALCKAAAIDSAQELLRMSIGMDCAP-DVVAY 478
Query: 419 KSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD---KSASFTDTSS 475
L+ A K K EAE+ L M V+N VV+ ++ V D KS D
Sbjct: 479 SILIHALCKAKRLPEAESWLDVM-----VKNRCYPDVVT--YNSVVDGLCKSRRINDAFL 531
Query: 476 LMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVE 535
L D+ MR + + + I+ FCK + A K+ RM+E K P V
Sbjct: 532 LFDR----------MRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVV 581
Query: 536 TFYYLVYGHSSLEMYRDITILWG-DIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVME 594
T+ L+ G + + T+ D+ + + A + Y TL+ + E+ E
Sbjct: 582 TYSALING-----LCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAE 636
Query: 595 VIGYMKKQNMYVDKLMY 611
++ M+KQ+ D + Y
Sbjct: 637 MLEIMRKQSCTPDSITY 653
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/237 (18%), Positives = 102/237 (43%), Gaps = 21/237 (8%)
Query: 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
G++ S +I I+ G + A+++ D+M G + +KS+L +A
Sbjct: 159 GDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLH 218
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
++M K+C +++ ++ + S D+ D A L++EM +
Sbjct: 219 FREMSKTCPPDSVTYNTMI---------------NGLSKSDRLDDAIRLLEEMVDNGFAP 263
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDIT-IL 556
++ N+ ++ FCK + +AL + +M P V ++ ++ G L+ + ++
Sbjct: 264 NVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVM 323
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
I+R + V+ Y TL+ F + G + +E++ M ++ + + Y +
Sbjct: 324 DKMIQRGCQPNVIT-----YGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNN 375
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 93/217 (42%), Gaps = 22/217 (10%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ L++G K GK E + LL + + S T + +ID +LG ++ A+ +L++M
Sbjct: 987 SSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTY-NTIIDGHCKLGRIDEAYHLLEEMV 1045
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL----------------- 450
G + TY LL A+ K +A L++ M + V NL
Sbjct: 1046 DGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVE 1105
Query: 451 -SCEMVVSERFSEVADKSASF-TDTSSLMDKSDLAES--LIQEMREEAALSTIYKLNSSI 506
+C+++ S S+ T + L + + E L+++M + I N+ I
Sbjct: 1106 RACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTII 1165
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
CK + A +++ +QE P + T+ LV+G
Sbjct: 1166 DAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHG 1202
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 21/181 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S ++D+L++ G ++ A +++DM G + TY SLL K EA ALL++M +
Sbjct: 952 STIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTR 1011
Query: 444 SCLVQNL---------SCEMV-VSERF---SEVADKSA--SFTDTSSLMD------KSDL 482
S N+ C++ + E + E+ D + + L+D K++
Sbjct: 1012 SGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAED 1071
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A L++ M E+ + ++ NS + FCK + A ++ M + P V ++ ++
Sbjct: 1072 AIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIA 1131
Query: 543 G 543
G
Sbjct: 1132 G 1132
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 94/233 (40%), Gaps = 27/233 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I L + G + A+++L +M G P + + ++ + A L K+M +S
Sbjct: 883 LIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEES- 941
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
SC + F+ ++ D+ K D A L+++M + + +S
Sbjct: 942 ----GSCP---PDVFT-----YSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSL 989
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL----EMYRDI-TILWGDI 560
++ CK + +A + +RM P + T+ ++ GH L E Y + ++ G
Sbjct: 990 LHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGC 1049
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ N+ + Y LL F + G E + ++ M ++ + Y S
Sbjct: 1050 QPNVVT---------YTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNS 1093
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 20/194 (10%)
Query: 348 AKLINGYKKHG---KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
LI+G+ K G K E+ LLLS S+ + S ID L + G L A ++L+
Sbjct: 1303 GTLIDGFCKTGNLDKALEILQLLLS----KGSYPDVVTFSIFIDWLSKRGRLRQAGELLE 1358
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK-SCLVQNLSCEMVVSERFSE- 462
M AG D+ TY +LL + + +A L + MR+ C N + +V +
Sbjct: 1359 TMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKK 1418
Query: 463 -----VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIY-FFCKGKMIG 516
+A+ S S DT ++ +L+ L + EA + +L +I F K
Sbjct: 1419 SYKDLLAEVSKSMVDTGFKLNH-ELSSKLEASIEVEADV----RLGCAIVDMFGKCGSPQ 1473
Query: 517 DALKIYRRMQEMKI 530
DA K++ M + +
Sbjct: 1474 DARKVFEGMDQRNV 1487
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 109/262 (41%), Gaps = 27/262 (10%)
Query: 374 HHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE 433
H ++ + + V+ + G L AA + D+M+ G D TY +L+ + +E
Sbjct: 349 HGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKE 408
Query: 434 AEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDK------------SD 481
AE +L++M L + V+ + + +V + +F + ++ K SD
Sbjct: 409 AERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSD 468
Query: 482 ---------LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP 532
A L+ EM + I+ NS I CK + A++ M E ++P
Sbjct: 469 GLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKP 528
Query: 533 TVETFYYLVYG-HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFER 591
V T+ ++ S E+ R ++L + + I+ ++ Y L+ F G E
Sbjct: 529 DVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVT-----YNVLMNGFCMSGRVEG 583
Query: 592 VMEVIGYMKKQNMYVDKLMYKS 613
++ +M ++N++ + Y S
Sbjct: 584 GKRLLEWMLEKNIHPNTTTYNS 605
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 33/201 (16%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVI------DALIQLGFLEAAHDIL 403
LI+GY K GK +E ++L+ H+ + + +V+ D L + G + AA+++L
Sbjct: 431 LIDGYCKVGKMTE-AFLV------HNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELL 483
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
+M G ++ TY SL+ K +A + M ++ L ++
Sbjct: 484 HEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVY------------ 531
Query: 464 ADKSASFTDTSSLMDKS---DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALK 520
++T + +S D A SL+QEM ++ TI N + FC + +
Sbjct: 532 -----TYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKR 586
Query: 521 IYRRMQEMKIRPTVETFYYLV 541
+ M E I P T+ L+
Sbjct: 587 LLEWMLEKNIHPNTTTYNSLM 607
>gi|110738160|dbj|BAF01011.1| DYW7 protein [Arabidopsis thaliana]
Length = 328
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 18/208 (8%)
Query: 354 YKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413
Y ++GK+ E L+ ++KE S G T + +I QLG +AA D++ ME G
Sbjct: 86 YCQNGKHEEAVELVKEMEKEGISPGLVTW-NILIGGYNQLGKCDAAMDLMQKMETFGITA 144
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN----------LSCEMVVSE--RFS 461
D T+ ++++ M +A + ++M + +V N SC V+++
Sbjct: 145 DVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVH 204
Query: 462 EVADKSASFTDT---SSLMDKSDLAESL--IQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+A K D +SL+D L +++ + +Y NS I +C+ G
Sbjct: 205 SIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCG 264
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGH 544
A +++ RMQ+ +RP + T+ ++ G+
Sbjct: 265 KAYELFTRMQDANLRPNIITWNTMISGY 292
>gi|410110065|gb|AFV61112.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
citrodora]
Length = 435
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 131/297 (44%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 20 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 77
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA AL+ +M+ + ++ N L V +++F
Sbjct: 78 KRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVENKKF 137
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E + + L+D + A+ L MR+ + + N+
Sbjct: 138 IEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIETNVVSYNTL 197
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 198 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 256
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 257 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYER 308
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 111/261 (42%), Gaps = 28/261 (10%)
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
H + D+M D TY +L+T + K +F A + L++M + + +L + E
Sbjct: 1 HGLFDEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIEL 60
Query: 460 FSEVADKSASFTDTSSL------------------MDKSDL---AESLIQEMREEAALST 498
++ D S + + S L K+ L A +LI EM+ +
Sbjct: 61 SRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPN 120
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILW 557
++ + + + K +AL ++ M+E+K + T ++ + L M ++ + W
Sbjct: 121 TASYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 180
Query: 558 GDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLK 617
G K IE+ V++ Y TLL + F + + M+++N+ + + Y S +
Sbjct: 181 GMRKMGIETNVVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMI 235
Query: 618 HHKHLYRRLKVSNARTEAQSK 638
+ K L K +N E Q++
Sbjct: 236 YGKTLEHE-KANNLIQEMQNR 255
>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
Length = 1056
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 92/218 (42%), Gaps = 23/218 (10%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ LI+G K K E + LL+ E + S V+D L+++G +E A +L M
Sbjct: 547 STLIDGLSKMAKMDE-ALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMR 605
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-----RKSCLVQNLSCE-MVVSERFS 461
AG D+ TY +L+ ++K + REA LL++M S + C + S RF
Sbjct: 606 DAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFD 665
Query: 462 ---EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL-------------NSS 505
E+ D A+ + + S + + L + R AL K+ ++
Sbjct: 666 EAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSAL 725
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
I CK I +A + RM P V TF L+ G
Sbjct: 726 IDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILING 763
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 25/219 (11%)
Query: 416 TTYKSLLTAYYKVKMFREAEALLKQMRKS----------------CLVQNLSCEMVVSER 459
TY +L+T K M R+A LL+ M +S C Q + V +R
Sbjct: 474 VTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKR 533
Query: 460 FSEVADKS-----ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKM 514
E + ++ D S M K D A L+ +M E + ++ + K
Sbjct: 534 ALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGR 593
Query: 515 IGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD 574
+ DA+ + R+M++ P T+ L+ G + R+ G ++ +E+G S
Sbjct: 594 MEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAV---GLLREMLEAG-FHPSVV 649
Query: 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y TL + G F+ +E++ YM + + + Y S
Sbjct: 650 TYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSS 688
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 17/159 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
V+D L + G E A +L +M GH D TY +++ K K A ++M
Sbjct: 898 VMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEM---- 953
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L +NL + +V +S D DK D A L +R TI ++
Sbjct: 954 LRKNLKPDAIV----------YSSLIDAFCKADKVDDAWKL---LRSSGIEPTITMYSTM 1000
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ CK + AL++ R M+ P + + L +
Sbjct: 1001 VDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAY 1039
>gi|255661200|gb|ACU25769.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 426
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 133/308 (43%), Gaps = 33/308 (10%)
Query: 338 GKLLHSNR-AMAKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF 395
G+ L ++ + LI + K G + LSWL ++ G+ L S++I+ +L
Sbjct: 2 GRALSPDKYTYSTLITYFGKEGLFDDALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCD 59
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------ 449
A I ++ +G D Y S++ + K K+FREA +L+ +MR + ++ +
Sbjct: 60 FSKAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYST 119
Query: 450 LSCEMVVSERFSEVADKSAS---------------FTDTSSLMDKSDLAESLIQEMREEA 494
L V +++F E A D +D + A+ L MR+
Sbjct: 120 LLTMYVENQKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGMRKXG 179
Query: 495 ALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRD 552
+ N+ + + ++ G+A+ ++R MQ I V T+ ++YG +LE +
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYG-KTLEHEKA 238
Query: 553 ITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
++ R IE + Y T++ + + G +R + ++ + +D+++Y+
Sbjct: 239 NNLIQEMHNRGIEPDAIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILYQ 293
Query: 613 SEFLKHHK 620
+ + + +
Sbjct: 294 TMIVAYER 301
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 100/235 (42%), Gaps = 35/235 (14%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F +A + L++M + + ++V+ E++ K F+
Sbjct: 8 DKYTYSTLITYFGKEGLFDDALSWLQKMEQD----RVPGDLVLYSNLIELSRKLCDFSKA 63
Query: 474 SSLMDK-------SDL------------------AESLIQEMREEAALSTIYKLNSSIYF 508
S+ + DL A SLI EMR + ++ +
Sbjct: 64 ISIFSRLKRSGITPDLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLLTM 123
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESG 567
+ + + +AL ++ M+E+K + T ++ + L+M ++ + WG K IE
Sbjct: 124 YVENQKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGMRKXGIEPN 183
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHL 622
V++ Y TLL + F + + M+++N+ + + Y + + + K L
Sbjct: 184 VVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTL 233
>gi|255661144|gb|ACU25741.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 426
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + + N L V +++F
Sbjct: 71 KRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301
Score = 42.0 bits (97), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 109/262 (41%), Gaps = 27/262 (10%)
Query: 374 HHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE 433
H ++ + + V+ + G L AA + D+M+ G D TY +L+ + +E
Sbjct: 349 HGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKE 408
Query: 434 AEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDK------------SD 481
AE +L++M L + V+ + + +V + +F + ++ K SD
Sbjct: 409 AERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSD 468
Query: 482 ---------LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP 532
A L+ EM + I+ NS I CK + A++ M E ++P
Sbjct: 469 GLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKP 528
Query: 533 TVETFYYLVYG-HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFER 591
V T+ ++ S E+ R ++L + + I+ ++ Y L+ F G E
Sbjct: 529 DVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVT-----YNVLMNGFCMSGRVEG 583
Query: 592 VMEVIGYMKKQNMYVDKLMYKS 613
++ +M ++N++ + Y S
Sbjct: 584 GKRLLEWMLEKNIHPNTTTYNS 605
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 33/201 (16%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVI------DALIQLGFLEAAHDIL 403
LI+GY K GK +E ++L+ H+ + + +V+ D L + G + AA+++L
Sbjct: 431 LIDGYCKVGKMTE-AFLV------HNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELL 483
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
+M G ++ TY SL+ K +A + M ++ L ++
Sbjct: 484 HEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVY------------ 531
Query: 464 ADKSASFTDTSSLMDKS---DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALK 520
++T + +S D A SL+QEM ++ TI N + FC + +
Sbjct: 532 -----TYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKR 586
Query: 521 IYRRMQEMKIRPTVETFYYLV 541
+ M E I P T+ L+
Sbjct: 587 LLEWMLEKNIHPNTTTYNSLM 607
>gi|359496222|ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g13150-like [Vitis vinifera]
Length = 379
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 26/162 (16%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+++A ++G L++A +LD+ME G D T+ +LL A+Y+ + + E + M+K+
Sbjct: 169 IVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNN 228
Query: 446 LVQNLSC-----EMVVSE-RFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499
+ N+ V+SE R SE + LI EM+ +
Sbjct: 229 VAPNVRSYNAKLRGVISENRMSEAVE--------------------LIDEMKTSGIKPDV 268
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+ LNS + FC + +A + Y + ++ P T+ L+
Sbjct: 269 FTLNSLMKGFCNAGNLEEAKRWYSEIARNELPPVRATYMTLI 310
>gi|255661154|gb|ACU25746.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 426
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYXKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + + N L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSXGVDIDQVLYQTMIVAYER 301
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD-------- 465
D TY +L+T + K +F A + L++M + + +L + E ++ D
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYXKAISIF 67
Query: 466 ---KSASFTD-------TSSLMDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
K + FT ++ K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL I+ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
Length = 655
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 110/249 (44%), Gaps = 22/249 (8%)
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
+L+ EH + + + +ID + + G L+ AH+IL+ M G + Y +LL
Sbjct: 284 VLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLC 343
Query: 427 KVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES 485
+ + E E LL +M K C + +++ ++V F + L+D+
Sbjct: 344 SAERWEETEELLAEMFDKDCPLDDVTFNILV------------DFFCQNGLVDR---VIE 388
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
L+++M + + + I FCK +I +A+ + + M +P ++ ++ G
Sbjct: 389 LLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLC 448
Query: 546 SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL-QGGYFERVMEVIGYMKKQNM 604
S E + D L + I+ G ++ + T L+NFL + G E+ +E++ M
Sbjct: 449 SAERWVDAEDLMSQM---IQQGC-PLNPITFNT-LINFLCKKGLVEQAIELLKQMLVNGC 503
Query: 605 YVDKLMYKS 613
D + Y +
Sbjct: 504 SPDLISYST 512
>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 732
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 107/254 (42%), Gaps = 27/254 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S VI A + G E A +L +M+ G D TY S ++A K + EA LL++M
Sbjct: 330 SIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPM 389
Query: 444 SCLVQN-LSCEMVVSE-----RFSEVAD---------------KSASFTDTSSLMDKSDL 482
+ N +S +V+S R+ E D ++ D + + +
Sbjct: 390 EGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQ 449
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A L++EM + NS+I K A+++ R M + P V T+ ++
Sbjct: 450 ALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIA 509
Query: 543 GHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
+ + + L+ +++R I V++ + T + QGG++E ++V+G M
Sbjct: 510 SCAMGRQWEEALDLFREMQRQGITPDVVSCN-----TAINACAQGGWWEEALDVLGEMPT 564
Query: 602 QNMYVDKLMYKSEF 615
+ D + Y++
Sbjct: 565 MGLVPDAISYRTAI 578
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 14/155 (9%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ I+A Q G+ E A D+L +M G D+ +Y++ + A K ++E LL++M
Sbjct: 539 CNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMS 598
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
L + +S RF+ SA D + K L L+++M +
Sbjct: 599 TVGLTPD-----AISYRFA----MSACSVDG---LWKEALV--LLRDMLAVGLSPDVVTY 644
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
NS+I KG +A + R+M + P V +F
Sbjct: 645 NSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSF 679
>gi|296090624|emb|CBI41008.3| unnamed protein product [Vitis vinifera]
Length = 379
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 26/162 (16%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+++A ++G L++A +LD+ME G D T+ +LL A+Y+ + + E + M+K+
Sbjct: 179 IVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNN 238
Query: 446 LVQNLSC-----EMVVSE-RFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499
+ N+ V+SE R SE + LI EM+ +
Sbjct: 239 VAPNVRSYNAKLRGVISENRMSEAVE--------------------LIDEMKTSGIKPDV 278
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+ LNS + FC + +A + Y + ++ P T+ L+
Sbjct: 279 FTLNSLMKGFCNAGNLEEAKRWYSEIARNELPPVRATYMTLI 320
>gi|410110137|gb|AFV61148.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rubella]
Length = 440
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/297 (19%), Positives = 132/297 (44%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 19 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 76
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +M+ + ++ N L V +++F
Sbjct: 77 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKF 136
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E + + L+D + A+ L MR+ ++ N+
Sbjct: 137 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLSMAKEADKLFWGMRKMGIEPSVVSFNTL 196
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I TV T+ ++YG +LE + ++ R
Sbjct: 197 LRVYGDAELFGEAIHLFRLMQRKNIEQTVVTYNSMIMIYG-KTLEHEKANNLIQEMQSRG 255
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D++++++ + + +
Sbjct: 256 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 307
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 108/264 (40%), Gaps = 38/264 (14%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
+ D+M D TY +L+T + K +F A + L++M + + ++V+
Sbjct: 2 LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ----DRVPGDLVLYSNLI 57
Query: 462 EVADKSASFTDTSSLMDK-------SDL------------------AESLIQEMREEAAL 496
E++ K ++ S+ + DL A SLI EM+ +
Sbjct: 58 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVM 117
Query: 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMYRDIT 554
++ + + + K +AL ++ M+E+K + T + VYG S+ D
Sbjct: 118 PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLSMAKEAD-K 176
Query: 555 ILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSE 614
+ WG K IE V++ + TLL + F + + M+++N+ + Y S
Sbjct: 177 LFWGMRKMGIEPSVVS-----FNTLLRVYGDAELFGEAIHLFRLMQRKNIEQTVVTYNSM 231
Query: 615 FLKHHKHLYRRLKVSNARTEAQSK 638
+ + K L K +N E QS+
Sbjct: 232 IMIYGKTLEHE-KANNLIQEMQSR 254
>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
Length = 455
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 107/252 (42%), Gaps = 29/252 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDM-ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
VI G ++AA DI+ +M E G + TY ++++ + KV EA + +M
Sbjct: 78 VIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTK 137
Query: 445 -----------------CLVQNLSCEMVVSERFSE--VADKSASFT--DTSSLMD-KSDL 482
C L ++ +R E VA A++ + MD +
Sbjct: 138 GEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTE 197
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A L++EM + ++ N I CK + AL+I+ M +R TV T+ L+Y
Sbjct: 198 AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIY 257
Query: 543 GHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
S ++ L+ + ++R I ++ LY L+ + G +R E++G M+K
Sbjct: 258 ALSKKGQVQETDKLFDEAVRRGIRPDLV-----LYNALINSHSTSGNIDRAFEIMGEMEK 312
Query: 602 QNMYVDKLMYKS 613
+ + D + Y +
Sbjct: 313 KRIAPDDVTYNT 324
>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 137/336 (40%), Gaps = 34/336 (10%)
Query: 298 ISIGSPNLRCGLKLQIMPELLEKDSILK---MEGKQELVLFRNGKLLH-----SNRAMAK 349
I+ G L LK P+ + ++++K ++G+ + L + KLL + + A
Sbjct: 110 ITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYAT 169
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LING K G LL I + S +IDAL + + A+ + +M +
Sbjct: 170 LINGVCKIGDTRGAIKLLRKIDGRLTK-PNVEMYSTIIDALCKYQLVSEAYGLFSEMTVK 228
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM----------RKSCLVQNLSCEMVVSER 459
G D TY +L+ + +EA LL +M + LV L E V E
Sbjct: 229 GISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEA 288
Query: 460 FSEVAD--KSASFTDT---SSLMDKSDL------AESLIQEMREEAALSTIYKLNSSIYF 508
S +A K+ D S+LMD L A+ + M ++ I
Sbjct: 289 KSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILING 348
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
FCK KM+ +AL +++ M + + P + T+ L+ G L I +W I + G
Sbjct: 349 FCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDG---LCKSGRIPYVWDLIDEMRDRGQ 405
Query: 569 LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
A Y +L+ + G+ +R + + MK Q +
Sbjct: 406 PA-DVITYSSLIDGLCKNGHLDRAIALFNKMKDQEI 440
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 14/160 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S ++D + ++ A + + M L G D TY L+ + K KM EA L K+M +
Sbjct: 308 STLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQ 367
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+V + +S + D + D LI EMR+ + + +
Sbjct: 368 KNMVPGIV-------TYSSLIDGLCKSGRIPYVWD-------LIDEMRDRGQPADVITYS 413
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
S I CK + A+ ++ +M++ +IRP + TF L+ G
Sbjct: 414 SLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDG 453
>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
Length = 760
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 19/212 (8%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDM 406
+ +I+GY K G E L ++ ++ +C + ++D +LG + AH I M
Sbjct: 300 STMIDGYAKLGLAHEAIALFQEMRNQN--VEPDGICYNTMVDIHARLGNFDEAHSIRRAM 357
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
E AG D TY +LL +Y K FREA +LL++M++ N+ + + + K
Sbjct: 358 EEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYC----K 413
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
D A +L Q++++ + ++ + CK +AL + M
Sbjct: 414 HGFHRD----------AMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMA 463
Query: 527 EMKIRPTVETFYYLV--YGHSSLEMYRDITIL 556
+ IRP V T+ L+ YG L + ++ L
Sbjct: 464 DNGIRPNVITYNSLLDAYGRQCLMVRKNFPKL 495
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 84/198 (42%), Gaps = 20/198 (10%)
Query: 417 TYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSL 476
TY +++ Y K+ + EA AL ++MR QN+ + + ++ + +F
Sbjct: 298 TYSTMIDGYAKLGLAHEAIALFQEMRN----QNVEPDGICYNTMVDIHARLGNF------ 347
Query: 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
D A S+ + M E I N+ + + K +A+ + M++ P + T
Sbjct: 348 ----DEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILT 403
Query: 537 FYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEV 595
+ L+ + +RD L+ D+K+ ++ V+ LY TL+ + G + + +
Sbjct: 404 YSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVV-----LYSTLVDGCCKNGSPDEALAL 458
Query: 596 IGYMKKQNMYVDKLMYKS 613
+ M + + + Y S
Sbjct: 459 LEEMADNGIRPNVITYNS 476
>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
Length = 975
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 106/259 (40%), Gaps = 45/259 (17%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID L + G L+ A ++ ++ME+ G + TY L+ + + + LL+ M K
Sbjct: 365 SIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK 424
Query: 444 SCLVQNLSCEMVVSERFSE------------------VADKSASFTDTSSLMDKS----- 480
+ N+ V+ + F + +A + ++T SL+D
Sbjct: 425 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYT---SLIDGFCKENH 481
Query: 481 -DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
D A ++ M + I N I +CK I D L+++R+M + T+
Sbjct: 482 LDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNT 541
Query: 540 LVYGHSSL-------EMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
L+ G L E+++++ + R + ++ Y+ LL G E+
Sbjct: 542 LIQGFCELGKLNVAKELFQEM------VSRKVPPNIVT-----YKILLDGLCDNGESEKA 590
Query: 593 MEVIGYMKKQNMYVDKLMY 611
+E+ ++K M +D +Y
Sbjct: 591 LEIFEKIEKSKMELDIGIY 609
>gi|30686506|ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g19720; AltName: Full=Protein DYW7
gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein [Arabidopsis thaliana]
gi|332191770|gb|AEE29891.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 894
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 18/208 (8%)
Query: 354 YKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413
Y ++GK+ E L+ ++KE S G T + +I QLG +AA D++ ME G
Sbjct: 257 YCQNGKHEEAVELVKEMEKEGISPGLVTW-NILIGGYNQLGKCDAAMDLMQKMETFGITA 315
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN----------LSCEMVVSE--RFS 461
D T+ ++++ M +A + ++M + +V N SC V+++
Sbjct: 316 DVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVH 375
Query: 462 EVADKSASFTDT---SSLMDKSDLAESL--IQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+A K D +SL+D L +++ + +Y NS I +C+ G
Sbjct: 376 SIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCG 435
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGH 544
A +++ RMQ+ +RP + T+ ++ G+
Sbjct: 436 KAYELFTRMQDANLRPNIITWNTMISGY 463
>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 20/205 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I A ++ G ++ A +++DM G P+D TY L+ A + + AL + M
Sbjct: 551 NTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMS 610
Query: 444 SCL-VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
L N+SC ++++ T ++ A +++M I
Sbjct: 611 KGLNPNNISCNILIN-----------GLCRTGNIQH----ALEFLRDMIHRGLTPDIVTY 655
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
NS I CK +AL ++ ++Q I P T+ L+ H M+ D +L + R
Sbjct: 656 NSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLL---LSR 712
Query: 563 NIESGVLAVSRDLYETLLLNFLQGG 587
++SG + Y L+ NF++ G
Sbjct: 713 GVDSGFIPNEVTWY-ILVSNFIKEG 736
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 110/265 (41%), Gaps = 24/265 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL-DDMEL 408
L++G + GK E LL + + L + +I+ + G L+ A ++ + M
Sbjct: 346 LMHGLCRMGKVDEARMLLNKVPNPN-----VVLFNTLINGYVSRGRLDEAKAVMHESMLS 400
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G D TY +L+ K A L+ +M+ N+ ++ +RF +
Sbjct: 401 VGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEG---- 456
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ + A +++ EM + N I CK + + DAL ++ M
Sbjct: 457 ----------RLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSK 506
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588
+P + TF L++G + + + L+ D+ + GV+A + Y TL+ FL+ G
Sbjct: 507 GCKPDIFTFNSLIFGLCKVNKFEEALGLYQDM---LLEGVIA-NTITYNTLIHAFLRRGA 562
Query: 589 FERVMEVIGYMKKQNMYVDKLMYKS 613
+ ++++ M + +D + Y
Sbjct: 563 MQEALKLVNDMLFRGCPLDDITYNG 587
>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 680
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 147/345 (42%), Gaps = 62/345 (17%)
Query: 170 AELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRD 229
+E I PD FN+++ A + G + ++ + +M + G+ D I+ + + C +
Sbjct: 273 SENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPD---IVTYNSLMDGYCLVN 329
Query: 230 ELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLR 289
E+ K ++ +S + Y +++ K +D A +L +M+ +++ PN
Sbjct: 330 EVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMH-HKQIFPNVITY 388
Query: 290 QDAQKPYLISIGSPNLRCGLKLQIM---------PELLEKDSILKMEGKQELVLFRNGKL 340
LI + R L+++ P+++ SIL K LV
Sbjct: 389 NS-----LIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLV------- 436
Query: 341 LHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAH 400
++A+A LI K G I+ +++ + +ID L + G LE A
Sbjct: 437 ---DKAIALLIK-LKDQG-----------IRPNMYTY------TILIDGLCKGGRLEDAR 475
Query: 401 DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVSER 459
+I +D+ + G+ + TY ++ + +F EA +LL +M+ SC+ ++ E+++
Sbjct: 476 NIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSL 535
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
F + D++D AE L++EM L + + S
Sbjct: 536 FDK---------------DENDKAEKLLREMITRGLLYSFLEYGS 565
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 80/369 (21%), Positives = 148/369 (40%), Gaps = 49/369 (13%)
Query: 213 HSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLL-SLHFKFDDIDAAGE 271
HS H N D + F C + Q TP + Q SL+ S H+
Sbjct: 37 HSFSTSTTFHNNNDVVDAVSLFNCLLRQNPTPPDMEFGQILGSLVKSKHYH-----TVLS 91
Query: 272 LILDMNRYREPLPN--------PKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSI 323
L M YR PN Q P+ S+ + L+ G + P+ + ++
Sbjct: 92 LFQKM-EYRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYE----PDTITLNTF 146
Query: 324 LK---MEGKQELVLFRNGKLL----HSNR-AMAKLINGYKKHGKNSELSWLLLSIKKEHH 375
+K ++G+ L + KL+ H ++ + LING K G+ LL + +
Sbjct: 147 IKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLV 206
Query: 376 SFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAE 435
+ + S +ID++ + + A D+ +M + TY +L++ + V ++A
Sbjct: 207 QL-DVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAI 265
Query: 436 ALLKQMRKSCLVQNLSCEMVVSERFS------EVADKSA---------------SFTDTS 474
L +M + ++ ++ + F E + A S D
Sbjct: 266 GLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGY 325
Query: 475 SLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
L+++ ++A+S++ M +T+ N I FCK KM+ A+K+++ M +I P V
Sbjct: 326 CLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNV 385
Query: 535 ETFYYLVYG 543
T+ L+ G
Sbjct: 386 ITYNSLIDG 394
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 102/252 (40%), Gaps = 33/252 (13%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM---- 441
++DA + G ++ A + L M G D TY SL+ Y V A+++L M
Sbjct: 286 LVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRG 345
Query: 442 -----RKSCLVQNLSCEMVVSER----FSEVADKS--ASFTDTSSLMD------KSDLAE 484
R +V N C++ + ++ F E+ K + +SL+D + A
Sbjct: 346 VTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYAL 405
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
LI M + I +S + CK ++ A+ + ++++ IRP + T+ L+ G
Sbjct: 406 ELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGL 465
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDL----YETLLLNFLQGGYFERVMEVIGYMK 600
D RNI +L +L Y ++ F G F+ + ++ MK
Sbjct: 466 CKGGRLED--------ARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMK 517
Query: 601 KQNMYVDKLMYK 612
+ D + Y+
Sbjct: 518 DNSCIPDAITYE 529
>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 347
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 20/203 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I A ++ G ++ A +++DM G P+D TY L+ A + + AL + M
Sbjct: 160 LIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKG 219
Query: 446 L-VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
L N+SC ++++ T ++ A +++M I NS
Sbjct: 220 LNPNNISCNILIN-----------GLCRTGNIQH----ALEFLRDMIHRGLTPDIVTYNS 264
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
I CK +AL ++ ++Q I P T+ L+ H M+ D +L + R +
Sbjct: 265 LINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLL---LSRGV 321
Query: 565 ESGVLAVSRDLYETLLLNFLQGG 587
+SG + Y L+ NF++ G
Sbjct: 322 DSGFIPNEVTWY-ILVSNFIKEG 343
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 84/205 (40%), Gaps = 18/205 (8%)
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G D TY +L+ K A L+ +M+ N+ ++ +RF +
Sbjct: 8 VGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEG---- 63
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ + A +++ EM + N I CK + + DAL ++ M
Sbjct: 64 ----------RLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSK 113
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588
+P + TF L++G + + + L+ D+ + GV+A + Y TL+ FL+ G
Sbjct: 114 GCKPDIFTFNSLIFGLCKVNKFEEALGLYQDM---LLEGVIA-NTITYNTLIHAFLRRGA 169
Query: 589 FERVMEVIGYMKKQNMYVDKLMYKS 613
+ ++++ M + +D + Y
Sbjct: 170 MQEALKLVNDMLFRGCPLDDITYNG 194
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 20/160 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I L + G+L +A +++++M++ G + TY L+ + K EA +L +M
Sbjct: 20 LILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKG 79
Query: 446 LVQN---LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
L N +C + + +V D F D SS K D I+
Sbjct: 80 LALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPD-----------------IFTF 122
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
NS I+ CK +AL +Y+ M + T+ L++
Sbjct: 123 NSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIH 162
>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 874
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 101/248 (40%), Gaps = 37/248 (14%)
Query: 363 LSWL-----LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTT 417
+SWL L I E ++F + +I AL ++AA ++ D+M G + T
Sbjct: 131 VSWLYKDMVLCGISPETYTF------NLLIRALCDSSCVDAARELFDEMPEKGCKPNEFT 184
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477
+ L+ Y K + + LL M E F + +K T SS
Sbjct: 185 FGILVRGYCKAGLTDKGLELLNSM----------------ESFGVLPNKVVYNTIVSSFC 228
Query: 478 --DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI----R 531
++D +E L+++MREE + I NS I CK + DA +I+ M+ + R
Sbjct: 229 REGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPR 288
Query: 532 PTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFER 591
P T+ ++ G + + D L+ I+ N + VS Y L ++ G F
Sbjct: 289 PNSITYNLMLKGFCKVGLLEDAKTLFESIRENDD----LVSLQSYNIWLQGLVRHGKFIE 344
Query: 592 VMEVIGYM 599
V+ M
Sbjct: 345 AETVLKQM 352
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 89/228 (39%), Gaps = 45/228 (19%)
Query: 358 GKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM---- 413
G+ SE LL + ++ + ++ C+ ++D L G L+ A +I+ M + G
Sbjct: 445 GRISEAEELLRKMNEKGYGL-DTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNL 503
Query: 414 -------------------DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEM 454
D TY +LL K F EA+ L +M L +
Sbjct: 504 GNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYN 563
Query: 455 VVSERFSEVADKSASF----------------TDTSSLMD---KSDLAE--SLIQEMREE 493
+ F + S++F T S ++ K+ + E L+ EMRE+
Sbjct: 564 IFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREK 623
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
I N++I + C+G + DA + M + I P V +F YL+
Sbjct: 624 GISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLI 671
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 115/285 (40%), Gaps = 43/285 (15%)
Query: 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVI-DALIQLGFLEAAHDILDDMELA 409
+ G +HGK E +L + + G S +++ D L +LG L A I+ M+
Sbjct: 333 LQGLVRHGKFIEAETVLKQMIDK--GIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRN 390
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQ-MRKSCLVQNLSCEMVVSERFSEVADKSA 468
G D+ TY LL Y V A++LL++ MR +CL +C +++ ++
Sbjct: 391 GVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWN------- 443
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
M + AE L+++M E+ N + C + A++I + M+
Sbjct: 444 --------MGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMR-- 493
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNFLQG 586
V+G ++L + I D IE+ L DL Y TLL +
Sbjct: 494 ------------VHGSAALGNLGNSYIGLVD-DSLIENNCLP---DLITYSTLLNGLCKA 537
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
G F + M + + D L Y H H ++ K+S+A
Sbjct: 538 GRFAEAKTLFAEMMGEKLQPDSLAYN--IFIH--HFCKQGKISSA 578
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 113/272 (41%), Gaps = 14/272 (5%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L++GY GK LL + + ++ + C+ ++ +L +G + A ++L M
Sbjct: 402 LLHGYCSVGKVDAAKSLLQEMMR-NNCLPNAYTCNILLHSLWNMGRISEAEELLRKMNEK 460
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR--KSCLVQNLSCEMV--VSERFSE--- 462
G+ +D+ T ++ +A ++K MR S + NL + V + E
Sbjct: 461 GYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNC 520
Query: 463 VADKSASFTDTSSLMDKSDLAE--SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALK 520
+ D T + L AE +L EM E N I+ FCK I A +
Sbjct: 521 LPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFR 580
Query: 521 IYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLL 580
+ + M++ ++ET+ L+ G L + I + G + E G+ + + Y T +
Sbjct: 581 VLKDMEKKGCHKSLETYNSLILG---LGIKNQIFEIHGLMDEMREKGI-SPNICTYNTAI 636
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
+GG E ++ M ++N+ + +K
Sbjct: 637 QYLCEGGKVEDATNLLDEMMQKNIAPNVFSFK 668
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 108/249 (43%), Gaps = 41/249 (16%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++ + G + ++L+ ME G + Y ++++++ + ++E L+++MR+
Sbjct: 188 LVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEG 247
Query: 446 LVQNLSCEMVVSERFS------EVADKSASFTD---------------TSSLMDKS---- 480
LV ++ + + R S +V D S F+D T +LM K
Sbjct: 248 LVPDI---VTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKV 304
Query: 481 ---DLAESLIQEMREEAALSTIYKLNSSIYFFCK-GKMIGDALKIYRRMQEMKIRPTVET 536
+ A++L + +RE L ++ N + + GK I +A + ++M + I P++ +
Sbjct: 305 GLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFI-EAETVLKQMIDKGIGPSIYS 363
Query: 537 FYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD--LYETLLLNFLQGGYFERVME 594
+ L+ G L M D + G +KRN VS D Y LL + G +
Sbjct: 364 YNILMDGLCKLGMLSDAKTIVGLMKRN------GVSPDAVTYGCLLHGYCSVGKVDAAKS 417
Query: 595 VIGYMKKQN 603
++ M + N
Sbjct: 418 LLQEMMRNN 426
>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22670, mitochondrial; Flags: Precursor
gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 562
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 104/237 (43%), Gaps = 23/237 (9%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
M+K++ K GK ++ L ++K + ++ + ++DAL++ +E AH++
Sbjct: 205 TMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLK 264
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD 465
+ P D+ T+ L+ + K + F +A A++ M+ V + ++V F E
Sbjct: 265 LFDTIKP-DARTFNILIHGFCKARKFDDARAMMDLMK----VTEFTPDVVTYTSFVEAYC 319
Query: 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
K F + ++ +EMRE + ++ K K + +AL +Y +M
Sbjct: 320 KEGDFRRVNEML----------EEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKM 369
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD--LYETLL 580
+E P + + L++ S ++D ++ D+ V RD +Y T++
Sbjct: 370 KEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQ------GVRRDVLVYNTMI 420
>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 447
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 8/196 (4%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
LING K G LL I + + S +IDAL + + A+ + +M
Sbjct: 167 GTLINGVCKIGDTRAAIKLLKKIDGRLTK-PDVVMYSTIIDALCKYQLVSEAYGLFSEMT 225
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
+ G D TY +L+ + V +EA LL M + ++ ++ + +
Sbjct: 226 VKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVK 285
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ S + D LI EMR+ + + +S I CK + A+ ++ +M++
Sbjct: 286 EAKRRISYVWD-------LIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKD 338
Query: 528 MKIRPTVETFYYLVYG 543
IRP + TF L+ G
Sbjct: 339 QGIRPNMFTFTILLDG 354
>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
Length = 722
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 20/205 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I A ++ G ++ A +++DM G P+D TY L+ A + + AL + M
Sbjct: 533 NTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMS 592
Query: 444 SCL-VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
L N+SC ++++ T ++ A +++M I
Sbjct: 593 KGLNPNNISCNILIN-----------GLCRTGNIQH----ALEFLRDMIHRGLTPDIVTY 637
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
NS I CK +AL ++ ++Q I P T+ L+ H M+ D +L + R
Sbjct: 638 NSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLL---LSR 694
Query: 563 NIESGVLAVSRDLYETLLLNFLQGG 587
++SG + Y L+ NF++ G
Sbjct: 695 GVDSGFIPNEVTWY-ILVSNFIKEG 718
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 110/265 (41%), Gaps = 24/265 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL-DDMEL 408
L++G + GK E LL + + L + +I+ + G L+ A ++ + M
Sbjct: 328 LMHGLCRMGKVDEARMLLNKVPNPN-----VVLFNTLINGYVSRGRLDEAKAVMHESMLS 382
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G D TY +L+ K A L+ +M+ N+ ++ +RF +
Sbjct: 383 VGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEG---- 438
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ + A +++ EM + N I CK + + DAL ++ M
Sbjct: 439 ----------RLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSK 488
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588
+P + TF L++G + + + L+ D+ + GV+A + Y TL+ FL+ G
Sbjct: 489 GCKPDIFTFNSLIFGLCKVNKFEEALGLYQDM---LLEGVIA-NTITYNTLIHAFLRRGA 544
Query: 589 FERVMEVIGYMKKQNMYVDKLMYKS 613
+ ++++ M + +D + Y
Sbjct: 545 MQEALKLVNDMLFRGCPLDDITYNG 569
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 119/282 (42%), Gaps = 28/282 (9%)
Query: 354 YKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413
+ ++G +SE+S + +K+ E + +I A + G E A + M AG
Sbjct: 464 FGQNGMDSEVSGVFKEMKRAGF-VPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTP 522
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLS-CEMV---------------V 456
D +TY ++L A + M+ ++E +L +M C L+ C ++
Sbjct: 523 DLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLA 582
Query: 457 SERFSEVADKSASFTDTSSLM-DKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
E +S V + A T L+ K DL AE E++E I LNS + + +
Sbjct: 583 EEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRR 642
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS-SLEMYRDITILWGDIKRNIESGVLAV 571
+M+ A + M+E P++ T+ L+Y HS S + + IL + + I+ +++
Sbjct: 643 QMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIIS- 701
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y T++ + + + M+ + D + Y +
Sbjct: 702 ----YNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNT 739
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 101/233 (43%), Gaps = 24/233 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I A + G L+ A ++ + M G D TY +LL+ + + A ++ ++MR
Sbjct: 353 NSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRN 412
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST-IYKL 502
+ N+ C F ++ FT+ + D+ ++ LS I
Sbjct: 413 AGCKPNI-CTF---NAFIKMYGNRGKFTEMMKIFDEINV-----------CGLSPDIVTW 457
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
N+ + F + M + +++ M+ P ETF L+ +S + ++ +R
Sbjct: 458 NTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVY---RR 514
Query: 563 NIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+++G V+ DL Y T+L +GG +E+ +V+ M+ ++L Y S
Sbjct: 515 MLDAG---VTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCS 564
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 61/319 (19%), Positives = 125/319 (39%), Gaps = 34/319 (10%)
Query: 297 LISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKK 356
L S+ PN G ++ EL E EL+ F G H +A
Sbjct: 103 LRSLIEPNFDSGQLDSVLSELFEPFKDKPESTSSELLAFLKGLGFHKKFDLAL------- 155
Query: 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST 416
W + +K++ S ++++ + +I L + G + +A ++ + ++ G +D
Sbjct: 156 ----RAFDWFMK--QKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVY 209
Query: 417 TYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSL 476
+Y SL++A+ +REA + K+M + L V+ F ++ T
Sbjct: 210 SYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKIT----- 264
Query: 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
SL+++M+ + Y N+ I +G + +A +++ M+ T
Sbjct: 265 --------SLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVT 316
Query: 537 FYYL--VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVME 594
+ L VYG S ++ + ++ N S + Y +L+ + + G + ME
Sbjct: 317 YNALLDVYGKSHRP--KEAMKVLNEMVLNGFSPSIVT----YNSLISAYARDGMLDEAME 370
Query: 595 VIGYMKKQNMYVDKLMYKS 613
+ M ++ D Y +
Sbjct: 371 LKNQMAEKGTKPDVFTYTT 389
>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 616
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 107/248 (43%), Gaps = 22/248 (8%)
Query: 368 LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK 427
LS EH + + + +ID + + G E A+DIL M G + Y ++L
Sbjct: 246 LSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCS 305
Query: 428 VKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL 486
+ + EAE LL +M ++ C + +++ ++V F + L+D+ L
Sbjct: 306 AERWEEAEDLLAEMFQEDCPLDDVTFNILV------------DFFCQNGLVDR---VIEL 350
Query: 487 IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546
+++M E + + + I FCK ++ +A+ + + M +P ++ ++ G
Sbjct: 351 LEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCR 410
Query: 547 LEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL-QGGYFERVMEVIGYMKKQNMY 605
E + D L I I+ G L + L+NF+ + G E+ +E++ M
Sbjct: 411 AERWVDAQEL---ISHMIQQGCL--PNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCS 465
Query: 606 VDKLMYKS 613
D + Y +
Sbjct: 466 PDLISYST 473
>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 548
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/252 (20%), Positives = 108/252 (42%), Gaps = 21/252 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L++G+ K GK ++ + ++L+I + + + ++D + + A DI D M
Sbjct: 277 LVDGFCKEGKVND-AKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASG 335
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + Y +++ + K+KM EA L ++MR ++ N VV+ +S
Sbjct: 336 GVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPN-----VVTY---------SS 381
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D + + A L+ EM + I +S + CK + A+ + +++
Sbjct: 382 LIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQG 441
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGY 588
IRP + T+ L+ G D ++ D + + V A Y ++ F G+
Sbjct: 442 IRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYA-----YTVMIQGFCDKGF 496
Query: 589 FERVMEVIGYMK 600
F++ + ++ M+
Sbjct: 497 FDKALALLSKME 508
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 121/288 (42%), Gaps = 32/288 (11%)
Query: 350 LINGYKKHGKNSELSWLLLS--IKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
LIN + + G NS LS+ + + +KK +H + + +I L G + A D +
Sbjct: 102 LINCFSQLGLNS-LSFSIFAKILKKGYHP--TAITFNTLIKGLCLKGHIHQALHFHDKVV 158
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ-------------------MRKSCLVQ 448
G +D +Y +L+ KV A LLK+ M K+ LV
Sbjct: 159 AQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVN 218
Query: 449 N---LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ L +MV +V +A + S++ K + A L +M++E +Y N
Sbjct: 219 DAFDLYSQMVAKRICPDVFTYNALISGFSAV-SKLNYAIDLFNKMKKENINPNVYTFNIL 277
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
+ FCK + DA + M + I+P V T+ L+ G+ S+ DI ++
Sbjct: 278 VDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNK----AKDIFDSMA 333
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
SG + + +Y T++ F + + + + M+ + + + + Y S
Sbjct: 334 SGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSS 381
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 87/217 (40%), Gaps = 22/217 (10%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
LING K G+ + LL + + + + + +ID + + + A D+ M
Sbjct: 170 GTLINGLCKVGRITAALQLLKRVDGKLVQ-PNAVMYNMIIDNMCKAKLVNDAFDLYSQMV 228
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA--- 464
D TY +L++ + V A L +M+K + N+ ++ + F +
Sbjct: 229 AKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVN 288
Query: 465 ------------DKSASFTDTSSLMD------KSDLAESLIQEMREEAALSTIYKLNSSI 506
D +SLMD K + A+ + M ++ + + +
Sbjct: 289 DAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMV 348
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
FCK KM+ +A+ ++ M+ KI P V T+ L+ G
Sbjct: 349 NGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDG 385
Score = 38.9 bits (89), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 14/154 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID L +LG + A ++D+M G P + TY S+L A K +A ALL ++
Sbjct: 380 SSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKD 439
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
Q + +M + +S D A+++ +++ + +Y
Sbjct: 440 ----QGIRPDMYTYTILIKGLCQSGRLED----------AQNVFEDLLVKGYNLDVYAYT 485
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
I FC AL + +M++ P +T+
Sbjct: 486 VMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTY 519
>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
Length = 759
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 19/203 (9%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDM 406
+ +I+GY K G E L ++ ++ +C + ++D +LG + AH I M
Sbjct: 299 STMIDGYAKLGLAHEAIALFQEMRNQN--VEPDGICYNTMVDIHARLGNFDEAHSIRRAM 356
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
E AG D TY +LL +Y K FREA +LL++M++ N+ + + + K
Sbjct: 357 EEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYC----K 412
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
D A +L Q++++ + ++ + CK +AL + M
Sbjct: 413 HGFHRD----------AMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMA 462
Query: 527 EMKIRPTVETFYYLV--YGHSSL 547
+ IRP V T+ L+ YG L
Sbjct: 463 DNGIRPNVITYNSLLDAYGRQCL 485
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 84/198 (42%), Gaps = 20/198 (10%)
Query: 417 TYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSL 476
TY +++ Y K+ + EA AL ++MR QN+ + + ++ + +F
Sbjct: 297 TYSTMIDGYAKLGLAHEAIALFQEMRN----QNVEPDGICYNTMVDIHARLGNF------ 346
Query: 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
D A S+ + M E I N+ + + K +A+ + M++ P + T
Sbjct: 347 ----DEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILT 402
Query: 537 FYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEV 595
+ L+ + +RD L+ D+K+ ++ V+ LY TL+ + G + + +
Sbjct: 403 YSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVV-----LYSTLVDGCCKNGSPDEALAL 457
Query: 596 IGYMKKQNMYVDKLMYKS 613
+ M + + + Y S
Sbjct: 458 LEEMADNGIRPNVITYNS 475
>gi|147791423|emb|CAN76850.1| hypothetical protein VITISV_005998 [Vitis vinifera]
Length = 340
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 26/162 (16%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+++A ++G L++A +LD+ME G D T+ +LL A+Y+ + + E + M+K+
Sbjct: 130 IVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNN 189
Query: 446 LVQNLSC-----EMVVSE-RFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499
+ N+ V+SE R SE + LI EM+ +
Sbjct: 190 VAPNVRSYNAKLRGVISENRMSEAVE--------------------LIDEMKTSGIKPDV 229
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+ LNS + FC + +A + Y + ++ P T+ L+
Sbjct: 230 FTLNSLMKGFCNAGNLEEAKRWYSEIARNELPPVRATYMTLI 271
>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
Length = 577
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 123/279 (44%), Gaps = 31/279 (11%)
Query: 339 KLLHSNRAM-AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLE 397
K+ N M ++NG K G ++E + LL I ++ ++ + S VIDAL + L+
Sbjct: 162 KICEPNEVMYGTVMNGLSKRG-HTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLD 220
Query: 398 AAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK----------SCLV 447
AA ++L++M+ P + TY SL+ K+ + + + LL +M S L+
Sbjct: 221 AAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILI 280
Query: 448 QNLSCEMVV---SERFSEVADKS--------ASFTDTSSLMDKSDLAESLIQEMREEAAL 496
L E V E + +K ++ D L + D A + +R++
Sbjct: 281 DGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIK 340
Query: 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
I+ + I +CK K + A++++ + + ++P T+ +++G + D +
Sbjct: 341 PNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKI 400
Query: 557 WGDIKRNIESGVLAVSRD--LYETLLLNFLQGGYFERVM 593
+ ++ R + + D L+ TLL + + G E M
Sbjct: 401 FDEMLR------VGPTPDICLHSTLLFGYFKYGLVEEAM 433
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 15/178 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LINGY K KN + L + ++ S ++ LI++G + A I D+M
Sbjct: 349 LINGYCKK-KNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRV 407
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D + +LL Y+K + EA L ++ ++ N+S VV +
Sbjct: 408 GPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCK------- 460
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
D+ A ++ +++ + + N I FC+ + + I R+M++
Sbjct: 461 -------NDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMED 511
>gi|255661190|gb|ACU25764.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 426
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 130/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ L+WL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALAWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + ++ N L V +++F
Sbjct: 71 KRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQSRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYER 301
Score = 45.8 bits (107), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 105/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A A L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALAWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR + ++ + + +
Sbjct: 68 SRLKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E QS+
Sbjct: 242 IQEMQSR 248
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 21/181 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS- 444
+I+ L ++G A + DD E +G TY +++ K+ A L K+M ++
Sbjct: 171 LINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAG 230
Query: 445 ---------CLVQNLSCEMVVSER---FSEVADKSAS---FTDTSSLMDKSDL-----AE 484
L+ +L + +V+E FS + K S FT S + + A
Sbjct: 231 CQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEAS 290
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+L+ EM + I+ N + CK + +A +++ M EM + P V T+ L+YG+
Sbjct: 291 ALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGY 350
Query: 545 S 545
S
Sbjct: 351 S 351
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 84/214 (39%), Gaps = 18/214 (8%)
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE 458
A + D M G D+ +Y L+ Y K K EA+ L +M + Q L+ + V
Sbjct: 359 ARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEM----IHQGLTPDNV--- 411
Query: 459 RFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDA 518
+ + + A+ L + M L ++ + + FCK +G A
Sbjct: 412 -------NYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKA 464
Query: 519 LKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYET 578
+++R MQ ++P + + L+ +D L+ ++ G+L + +Y T
Sbjct: 465 FRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSEL---FVQGLLP-NVQIYTT 520
Query: 579 LLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
++ N + G + +E M+ D+ Y
Sbjct: 521 IINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYN 554
>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
Length = 545
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 88/197 (44%), Gaps = 20/197 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K G+ E + E ++ + +ID L +LG +E + +M
Sbjct: 192 LIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNR 251
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLSCEMVVSE--RFSEVADK 466
G+ D+ TY +L+ + K KM +A + +QM +S +V ++ +++ + VA+
Sbjct: 252 GYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEA 311
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
A+F M E ++T+ ++ + FC + A++++RRM
Sbjct: 312 YATFL-----------------AMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRML 354
Query: 527 EMKIRPTVETFYYLVYG 543
+ P + ++ ++ G
Sbjct: 355 DRGCEPNLVSYNIIIRG 371
>gi|255661182|gb|ACU25760.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 426
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 125/268 (46%), Gaps = 23/268 (8%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ +G+ D Y +++ + K K+FREA +L+ +M+ + ++ N + + + E
Sbjct: 71 KNSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLLTMYVE---- 126
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ F + A S+ EMRE L + N I + + M +A K++ M+
Sbjct: 127 NKKFLE----------ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 176
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQ 585
+M I P V ++ L+ + E++ + L+ ++R NIE V+ Y ++++ + +
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YNSMIMIYGK 231
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ +I M+ + + + + Y +
Sbjct: 232 TLEHEKANNLIQEMQSRGIEPNSITYST 259
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSLMDKS---DL------------------AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L + DL A SLI EM+ + ++ + + +
Sbjct: 68 SRLKNSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E QS+
Sbjct: 242 IQEMQSR 248
>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
Length = 496
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 102/252 (40%), Gaps = 25/252 (9%)
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
T C+ +++ + G + A + D+M L G + TY +L+ Y+ + AL ++
Sbjct: 39 TACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEE 98
Query: 441 MRKSCLVQNLS---------CEMVVSERFSEVADKSASFTDTSSLMDKSDL--------- 482
MR+ + NL C ER + D+ +++ + L
Sbjct: 99 MRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGK 158
Query: 483 ---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
A L+ MR E +I N + + K + +AL + +M+ +P+ T+
Sbjct: 159 LWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNM 218
Query: 540 LVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
L+ G RD+T + E G L ++ Y L+ +F + + + E++ M
Sbjct: 219 LIAGFCRA---RDMTRANRALSDMKERG-LEPTKVTYTILIDSFARENHMGKAFEILAGM 274
Query: 600 KKQNMYVDKLMY 611
+K + VD Y
Sbjct: 275 EKAGLEVDAHTY 286
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 166 KSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMN 225
+S G + ++P +I++++++ R GSS K ++ M Q G++ ++ S + ++
Sbjct: 307 QSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVL--- 363
Query: 226 CQRDELKKFKCYIDQLST--PFAHHYQQFYES 255
C+ D+ ++ + +D + T FA H+Q F S
Sbjct: 364 CKDDKCQEAEALLDDMETIRSFAGHHQNFIAS 395
>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
Length = 568
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 107/252 (42%), Gaps = 29/252 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDM-ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
VI G ++AA DI+ +M E G + TY ++++ + KV EA + +M
Sbjct: 191 VIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTK 250
Query: 445 -----------------CLVQNLSCEMVVSERFSE--VADKSASFT--DTSSLMD-KSDL 482
C L ++ +R E VA A++ + MD +
Sbjct: 251 GEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTE 310
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A L++EM + ++ N I CK + AL+I+ M +R TV T+ L+Y
Sbjct: 311 AYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIY 370
Query: 543 GHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
S ++ L+ + ++R I ++ LY L+ + G +R E++G M+K
Sbjct: 371 ALSKKGQVQETDKLFDEAVRRGIRPDLV-----LYNALINSHSTSGNIDRAFEIMGEMEK 425
Query: 602 QNMYVDKLMYKS 613
+ + D + Y +
Sbjct: 426 KRIAPDDVTYNT 437
>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
Length = 528
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 91/193 (47%), Gaps = 21/193 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+IDA + G + A ++ D+M + P+ +TTY ++ + + + EA+L +M++
Sbjct: 305 LIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQG 364
Query: 446 LVQNLSCEMVV------SERFSEVAD-----KSASFTDTSSLMDK----------SDLAE 484
LV N+ + S RF E D K+ +S++ +D A
Sbjct: 365 LVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHAL 424
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
++++ MR + ++ LNS I F + + I +A + + M+E +RP V T+ L+
Sbjct: 425 NVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKAL 484
Query: 545 SSLEMYRDITILW 557
+E + + +++
Sbjct: 485 IRVEQFEKVPVIY 497
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 115/280 (41%), Gaps = 19/280 (6%)
Query: 332 LVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALI 391
L F G++ RA L+ GY K G +L + + + E+T S ++DA
Sbjct: 147 LEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATY-SLLVDAYT 205
Query: 392 QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
+ G E+A +L +ME G S + +L + +++A A+L++M S + +
Sbjct: 206 RAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRH 265
Query: 452 CEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK 511
V+ + F + + MD D MREE + N+ I CK
Sbjct: 266 FYNVMIDTFGK-------YNCLGHAMDAFD-------RMREEGIEPDVVTWNTLIDAHCK 311
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV 571
G A++++ M+E T+ ++ + + + + ++K E G L
Sbjct: 312 GGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMK---EQG-LVP 367
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ Y TL+ + + G F+ ++ I MK + MY
Sbjct: 368 NIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMY 407
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 75/164 (45%), Gaps = 20/164 (12%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ + + G +E A + D+M G D +Y +L+ Y K EA ++ +M +
Sbjct: 224 NSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQ 283
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS---DLAESLIQEMREEAALSTIY 500
++ ++ +FT +M K+ + A +L+++MRE
Sbjct: 284 KGIMPDV-----------------VTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEV 326
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ I FCK + DAL R M++ +I+P+V + L+ G+
Sbjct: 327 TFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGY 370
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 20/229 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I AL G + A IL DM AG + TY +L+ A+++ AE L+ M
Sbjct: 156 LIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGG 215
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L NL V K+ D + D EM E N+
Sbjct: 216 LKPNL----VTFNSMVNGMCKAGKMEDARKVFD----------EMMREGLAPDGVSYNTL 261
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG-DIKRNI 564
+ +CK +AL ++ M + I P V TF L++ M + + W + R +
Sbjct: 262 VGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIH-----VMCKAGNLEWAVTLVRQM 316
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
L ++ + L+ F + G+ + + + M++ + + Y +
Sbjct: 317 RERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNA 365
>gi|255661160|gb|ACU25749.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 426
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + + N L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G ++ + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDKAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301
Score = 42.0 bits (97), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 14/161 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I+ L + G LE A I+ +ME AGH D TY +L+ K F A +L++M
Sbjct: 501 NSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLD 560
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ +++ V+ F + + + + L++ M E+ + N
Sbjct: 561 KGIKPSIATYNVLMNGF--------------CMSGRVEGGKKLLEWMLEKNVRPNVVTYN 606
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
S + +C K + +IY+ M ++ P T+ L+ GH
Sbjct: 607 SLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGH 647
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 51/255 (20%), Positives = 103/255 (40%), Gaps = 33/255 (12%)
Query: 380 STLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK 439
+T+ + VI L G + A +L+DM + G +D+ + ++++ + A L +
Sbjct: 322 ATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFE 381
Query: 440 QMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES--LIQEMREEAALS 497
+M+K L AD+ + L +L E+ ++QEM ++
Sbjct: 382 EMQKRGL----------------AADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDV 425
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ I +CK + +A +++ M ++ P V T+ L G R L
Sbjct: 426 DVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELL 485
Query: 558 GDI-KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK----KQNMY-----VD 607
++ + +E V Y +L+ + G E+ M ++ M+ + ++Y +D
Sbjct: 486 HEMCNKGLELNVYT-----YNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLID 540
Query: 608 KLMYKSEFLKHHKHL 622
L EF + H L
Sbjct: 541 TLCKSGEFDRAHNML 555
>gi|255661196|gb|ACU25767.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 426
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 128/298 (42%), Gaps = 34/298 (11%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSF-GESTLCSDVIDALIQLGFLEAAHDILDD 405
+ LI + K G + LSWL K EH G+ L S++I+ +L A I
Sbjct: 13 STLITHFGKEGLFDDALSWLQ---KMEHDRVRGDLXLYSNLIELSRKLCDYSKAISIFSR 69
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSER 459
++ +G D Y S++ + K K+FREA +L+ +MR ++ + L V +++
Sbjct: 70 LKRSGITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLTMYVENKK 129
Query: 460 FSEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNS 504
F E A + L+D + A+ L MR+ + N+
Sbjct: 130 FIEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGVEPNVVSYNT 189
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKR 562
+ + ++ G+A ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 190 LLRVYSDAELFGEAXHLFRLMQRKDIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQSR 248
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 249 GIEPNAIT-----YSTIISIWGKVGKLDRAAMLFEKLRSSGIEIDQVLYQTMIVAYER 301
>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
Length = 467
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 102/252 (40%), Gaps = 25/252 (9%)
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
T C+ +++ + G + A + D+M L G + TY +L+ Y+ + AL ++
Sbjct: 39 TACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEE 98
Query: 441 MRKSCLVQNLS---------CEMVVSERFSEVADKSASFTDTSSLMDKSDL--------- 482
MR+ + NL C ER + D+ +++ + L
Sbjct: 99 MRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGK 158
Query: 483 ---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
A L+ MR E +I N + + K + +AL + +M+ +P+ T+
Sbjct: 159 LWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNM 218
Query: 540 LVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
L+ G RD+T + E G L ++ Y L+ +F + + + E++ M
Sbjct: 219 LIAGFCRA---RDMTRANRALSDMKERG-LEPTKVTYTILIDSFARENHMGKAFEILAGM 274
Query: 600 KKQNMYVDKLMY 611
+K + VD Y
Sbjct: 275 EKAGLEVDAHTY 286
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 166 KSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMN 225
+S G + ++P +I++++++ R GSS K ++ M Q G++ ++ S + ++
Sbjct: 307 QSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVL--- 363
Query: 226 CQRDELKKFKCYIDQLST--PFAHHYQQFYES 255
C+ D+ ++ + +D + T FA H+Q F S
Sbjct: 364 CKDDKCQEAEALLDDMETIRSFAGHHQNFIAS 395
>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 794
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 112/279 (40%), Gaps = 28/279 (10%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
A LING K G LL I + S +IDAL + + A+ + +M
Sbjct: 416 ATLINGVCKIGDTRGAIKLLRKIDGRLTK-PNVEMYSTIIDALCKYQLVSEAYGLFSEMT 474
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM----------RKSCLVQNLSCEMVVS 457
+ G D TY +L+ + V +EA LL +M + LV L E V
Sbjct: 475 VKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVK 534
Query: 458 ERFSEVA------DKSASFTDTSSLMDKSDL------AESLIQEMREEAALSTIYKLNSS 505
E S +A K FT ++LM+ L A+ + M ++
Sbjct: 535 EAKSVLAVMLKACVKPDVFT-YNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTIL 593
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I FCK KM+ +AL +++ M + + P T+ LV G L I+ +W I +
Sbjct: 594 INGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDG---LCKSGRISYVWDLIDEMRD 650
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
G A Y +L+ + G+ ++ + + MK Q +
Sbjct: 651 RGQPA-DVITYNSLIDGLCKNGHLDKAIALFNKMKDQGI 688
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
++ A + + M L G D TY L+ + K KM EA L K+M + +V +
Sbjct: 568 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPD------ 621
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+ +S + D S + D LI EMR+ + + NS I CK +
Sbjct: 622 -TVTYSSLVDGLCKSGRISYVWD-------LIDEMRDRGQPADVITYNSLIDGLCKNGHL 673
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYG 543
A+ ++ +M++ IRP TF L+ G
Sbjct: 674 DKAIALFNKMKDQGIRPNTFTFTILLDG 701
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 21/191 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHS---FGESTLCSDVIDALIQLGFLEAAHDILDDM 406
LING+ K S++ L++ KE H ++ S ++D L + G + D++D+M
Sbjct: 593 LINGFCK----SKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEM 648
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
G P D TY SL+ K +A AL +M+ + N + F+ + D
Sbjct: 649 RDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPN-------TFTFTILLD- 700
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
L D A+ + Q++ + +Y N IY CK ++ +AL + +M+
Sbjct: 701 --GLCKGGRLKD----AQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKME 754
Query: 527 EMKIRPTVETF 537
E P TF
Sbjct: 755 ENGCIPNAVTF 765
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 23/174 (13%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-- 441
+ +IDAL + + A+ + +M + G + TY +L+ + V +EA LL M
Sbjct: 137 NTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVL 196
Query: 442 --------RKSCLVQNLSCEMVVSERFSEVA------DKSASFTDTSSLMDKSDL----- 482
+ LV L E V E S +A KS T S+LMD L
Sbjct: 197 KTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVIT-YSTLMDGYFLVYEVK 255
Query: 483 -AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVE 535
A+ + M ++ N I FCK K + AL +++ M + P ++
Sbjct: 256 KAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQ 309
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 126/286 (44%), Gaps = 28/286 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+ + ++G +SE+S + +K+ E + +I A + GF + A I M A
Sbjct: 472 LLAVFGQNGMDSEVSGVFKEMKRAGF-VPERDTFNTLISAYSRCGFFDQAMAIYRRMLDA 530
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLS-CEM------------- 454
G D +TY ++L A + ++ ++E +L +M+ C L+ C +
Sbjct: 531 GVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERM 590
Query: 455 --VVSERFSEVADKSASFTDTSSLM-DKSDL---AESLIQEMREEAALSTIYKLNSSIYF 508
+ E +S + + A T L+ KSDL E E+RE+ I LN+ +
Sbjct: 591 SALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSI 650
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMY-RDITILWGDIKRNIESG 567
+ + +M+ +I +++ P++ T+ L+Y +S E + + IL I + ++
Sbjct: 651 YGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPD 710
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+++ + T++ + + G + + MK + D + Y +
Sbjct: 711 IIS-----FNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNT 751
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 103/240 (42%), Gaps = 29/240 (12%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------- 449
E A ++ ++M+ AG D TY +LL Y K + REA +LK+M S +
Sbjct: 308 EEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSL 367
Query: 450 ---------LSCEMVVSERFSEVADKSASFTDTSSL-----MDKSDLAESLIQEMREEAA 495
L M + + + K FT T+ L K D A + +EMR
Sbjct: 368 ISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGC 427
Query: 496 LSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMYRDI 553
I N+ I + +K++ ++ + P + T+ L V+G + ++ ++
Sbjct: 428 QPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMD--SEV 485
Query: 554 TILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ ++ ++KR +G + RD + TL+ + + G+F++ M + M + D Y +
Sbjct: 486 SGVFKEMKR---AGFVP-ERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNA 541
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 106/261 (40%), Gaps = 26/261 (9%)
Query: 359 KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL----GFLEAAHDILDDMELAGHPMD 414
K +EL+ + + F S L + V+ +I + G A +L D+ G +D
Sbjct: 161 KKNELALCVFYFVRNREDFA-SILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHID 219
Query: 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTS 474
Y SL+TAY +REA + K++ + L V+ + ++
Sbjct: 220 IYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMG---------- 269
Query: 475 SLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
M S +A L+ M+ +Y N+ I +G + +A +++ M+ P
Sbjct: 270 --MPWSKIA-GLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDK 326
Query: 535 ETFYYL--VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
T+ L VYG S R+ ++ + +E+ A S Y +L+ + + G +
Sbjct: 327 VTYNALLDVYGKSRRP--REAM----EVLKEMEASGFAPSIVTYNSLISAYARDGLLDEA 380
Query: 593 MEVIGYMKKQNMYVDKLMYKS 613
ME+ M K+ + D Y +
Sbjct: 381 MELKSQMVKKGIKPDVFTYTT 401
>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 804
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 140/328 (42%), Gaps = 34/328 (10%)
Query: 315 PELLEKDSILKMEGKQE-----LVLFRNGKLLHSNRAMAK---LINGYKKHGKNSELSWL 366
P + ++++KM G + + +F + KL + + + L+ + ++G +S++S +
Sbjct: 402 PNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGI 461
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
+K+ E + +I A + G + A + M AG D +TY ++L A
Sbjct: 462 FKEMKRAGF-VAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALA 520
Query: 427 KVKMFREAEALLKQMRKS-CLVQNLSCEMVVS--------ERFSEVADK--SASFTDTSS 475
+ ++ ++E +L +M C LS ++ ER + A++ S S +
Sbjct: 521 RGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAV 580
Query: 476 LM-------DKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
L+ KSDL E E+R I LN+ + + + +M+ A +I M
Sbjct: 581 LLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFM 640
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ 585
E + P++ T+ L+Y +S E ++ +I R + + R Y T++ + +
Sbjct: 641 HETRFTPSLTTYNSLMYMYSRSENFQKSE----EILREVLEKGMKPDRISYNTVIYAYCR 696
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G + + MK + D + Y +
Sbjct: 697 NGRMKEASRIFSEMKDSALVPDVVTYNT 724
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 91/219 (41%), Gaps = 22/219 (10%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
+ A +L +ME G S TY SL++AY K + EA L QM + ++ +
Sbjct: 316 QEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTL 375
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
F + K D A + EMR I N+ I
Sbjct: 376 LSGFEKAG--------------KDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFA 421
Query: 517 DALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD 574
+ +K++ ++ P + T+ L V+G + ++ ++ ++ ++KR +G +A RD
Sbjct: 422 EMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMD--SQVSGIFKEMKR---AGFVA-ERD 475
Query: 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ TL+ + + G F++ M V M + + D Y +
Sbjct: 476 TFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNA 514
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 126/286 (44%), Gaps = 28/286 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+ + ++G +SE+S + +K+ E + +I A + GF + A I M A
Sbjct: 472 LLAVFGQNGMDSEVSGVFKEMKRAGF-VPERDTFNTLISAYSRCGFFDQAMAIYRRMLDA 530
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLS-CEM------------- 454
G D +TY ++L A + ++ ++E +L +M+ C L+ C +
Sbjct: 531 GVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERM 590
Query: 455 --VVSERFSEVADKSASFTDTSSLM-DKSDL---AESLIQEMREEAALSTIYKLNSSIYF 508
+ E +S + + A T L+ KSDL E E+RE+ I LN+ +
Sbjct: 591 SALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSI 650
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMY-RDITILWGDIKRNIESG 567
+ + +M+ +I +++ P++ T+ L+Y +S E + + IL I + ++
Sbjct: 651 YGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPD 710
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+++ + T++ + + G + + MK + D + Y +
Sbjct: 711 IIS-----FNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNT 751
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 103/240 (42%), Gaps = 29/240 (12%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------- 449
E A ++ ++M+ AG D TY +LL Y K + REA +LK+M S +
Sbjct: 308 EEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSL 367
Query: 450 ---------LSCEMVVSERFSEVADKSASFTDTSSL-----MDKSDLAESLIQEMREEAA 495
L M + + + K FT T+ L K D A + +EMR
Sbjct: 368 ISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGC 427
Query: 496 LSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMYRDI 553
I N+ I + +K++ ++ + P + T+ L V+G + ++ ++
Sbjct: 428 QPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMD--SEV 485
Query: 554 TILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ ++ ++KR +G + RD + TL+ + + G+F++ M + M + D Y +
Sbjct: 486 SGVFKEMKR---AGFVP-ERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNA 541
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 106/261 (40%), Gaps = 26/261 (9%)
Query: 359 KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL----GFLEAAHDILDDMELAGHPMD 414
K +EL+ + + F S L + V+ +I + G A +L D+ G +D
Sbjct: 161 KKNELALCVFYFVRNREDFA-SILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHID 219
Query: 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTS 474
Y SL+TAY +REA + K++ + L V+ + ++
Sbjct: 220 IYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMG---------- 269
Query: 475 SLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
M S +A L+ M+ +Y N+ I +G + +A +++ M+ P
Sbjct: 270 --MPWSKIA-GLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDK 326
Query: 535 ETFYYL--VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
T+ L VYG S R+ ++ + +E+ A S Y +L+ + + G +
Sbjct: 327 VTYNALLDVYGKSRRP--REAM----EVLKEMEASGFAPSIVTYNSLISAYARDGLLDEA 380
Query: 593 MEVIGYMKKQNMYVDKLMYKS 613
ME+ M K+ + D Y +
Sbjct: 381 MELKSQMVKKGIKPDVFTYTT 401
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 75/164 (45%), Gaps = 20/164 (12%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ + + G +E A + D+M G D +Y +L+ Y K EA ++ +M +
Sbjct: 264 NSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQ 323
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS---DLAESLIQEMREEAALSTIY 500
++ ++ +FT +M K+ + A +L+++MRE
Sbjct: 324 KGIMPDV-----------------VTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEV 366
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ I FCK + DAL R M++ +I+P+V + L+ G+
Sbjct: 367 TFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGY 410
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 88/217 (40%), Gaps = 20/217 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++ AL G + A IL DM AG + TY +L+ A+++ AE L+ MR+
Sbjct: 196 LVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGG 255
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L NL V K+ D + D EM E N+
Sbjct: 256 LKPNL----VTFNSMVNGMCKAGKMEDARKVFD----------EMVREGLAPDGVSYNTL 301
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS-SLEMYRDITILWGDIKRNI 564
+ +CK +AL ++ M + I P V TF L++ + + R +T++ R +
Sbjct: 302 VGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLV-----RQM 356
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
L ++ + L+ F + G+ + + + MK+
Sbjct: 357 RERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQ 393
>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 114/270 (42%), Gaps = 32/270 (11%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
P + +N+++ AC R G L+ + ++ M + G+ + +I IH + C +L +
Sbjct: 184 PTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGI--EPTVVIYTTLIHGL-CSESKLMEA 240
Query: 235 KCYIDQL--STPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDA 292
+ Q+ S F + Y Y L+ + K ++ A L M D
Sbjct: 241 ESMFRQMKDSGVFPNLYT--YNVLMDGYCKTANVKQALHLYQGM------------LDDG 286
Query: 293 QKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLIN 352
+P +++ G I+ + L K L + ++ V ++ + LI+
Sbjct: 287 LQPNVVTFG-----------ILIDALCKVREL-LAARRFFVQMAKFGVVPNVVVFNSLID 334
Query: 353 GYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHP 412
GY K G SE + LLL ++K S T S +I +LG +E A DIL ME G P
Sbjct: 335 GYSKAGNCSEATDLLLEMEKFKISPDVFTY-SILIKNACRLGTVEEADDILKRMEKEGVP 393
Query: 413 MDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
+S Y SL+ Y K +A + K +
Sbjct: 394 ANSVVYNSLIDGYCKEGNMEKALEIFKATK 423
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 53/271 (19%), Positives = 110/271 (40%), Gaps = 23/271 (8%)
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
+A L+NG K + ++ W L + F + ++DA + G + A ++
Sbjct: 152 QACNALLNGLLKKS-SFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLIS 210
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
+M G Y +L+ EAE++ +QM+ S + NL V+ + + + A
Sbjct: 211 EMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTA 270
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
+ + L Q M ++ + I CK + + A + + +
Sbjct: 271 NVKQAL--------------HLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQ 316
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLN 582
M + + P V F L+ G+S + T L ++++ +S D+ Y L+ N
Sbjct: 317 MAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEK------FKISPDVFTYSILIKN 370
Query: 583 FLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ G E +++ M+K+ + + ++Y S
Sbjct: 371 ACRLGTVEEADDILKRMEKEGVPANSVVYNS 401
>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
Length = 583
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 104/243 (42%), Gaps = 37/243 (15%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
+ R LING+ K G+ LL ++ + + + + +ID + G ++ A I
Sbjct: 316 NERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQ-IIFNTMIDGYCRKGMVDDALKI 374
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN---------LSC- 452
ME G +D TY +L +V EA+ LL M + +V N + C
Sbjct: 375 KAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCK 434
Query: 453 --EMVVSER-FSEVADKSAS------------FTDTSSLMDKSDLAESLIQEMREEAALS 497
+MV + R F E+A+K A+ +T S+ + AE +EM ++ +
Sbjct: 435 DGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIRE----AERFRKEMEKKGFVP 490
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMY 550
+Y S ++ C + ALK++ M++ P V + L+ G ++ ++Y
Sbjct: 491 DVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLY 550
Query: 551 RDI 553
D+
Sbjct: 551 DDM 553
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 100/230 (43%), Gaps = 18/230 (7%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S V+D L + G ++ A +LDDM G +++ Y SLL Y + K + +L+ M
Sbjct: 181 SVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIM-- 238
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+N E V ++ + D ++ D S + E+L EM+ + +Y
Sbjct: 239 ----ENEGIEATVGT-YTILVDSLSTARDISKV-------EALFNEMKANNVVGDVYLYT 286
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ I +C+ + A K+ + P T+ L+ G + +L D++
Sbjct: 287 AVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQ-- 344
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
GV +++ ++ T++ + + G + +++ M+K + +D Y +
Sbjct: 345 -GQGV-GLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNT 392
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 90/220 (40%), Gaps = 24/220 (10%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILD 404
A + +++G K G+ + LL + + H + LC + ++D ++ +IL+
Sbjct: 179 AASVVVDGLCKSGRVDDARRLLDDMPR--HGVSLNALCYNSLLDCYVRQKDDGRVQEILE 236
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQ---------NLSCEMV 455
ME G TY L+ + + + EAL +M+ + +V N C
Sbjct: 237 IMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAG 296
Query: 456 VSERFSEVADKSAS------------FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
R ++V D+ + + + + AE L+ +M+ + N
Sbjct: 297 NMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFN 356
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ I +C+ M+ DALKI M++M + + T+ L G
Sbjct: 357 TMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACG 396
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 37/226 (16%)
Query: 336 RNGKLLHSNRAMAKL---------------INGYKKHGKNSELSWLLLSIKKEHHSFGES 380
++GKLL + + + ++ I+G K GK +E +L +++ +
Sbjct: 244 KSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDV 303
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
S VI+ L + L A +LD M AG D TY +++ K EAE LL+
Sbjct: 304 VTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQG 363
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS---DLAESLIQEMREEAALS 497
M+++ N+ ++T S + K+ D AE +++EMR
Sbjct: 364 MKRAGCAPNV-----------------VTYTTLISGLCKARKVDEAERVMEEMRNAGCPP 406
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR--PTVETFYYLV 541
+ N+ + C I +A ++ +RM++ + P T+ +V
Sbjct: 407 NLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIV 452
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 122/268 (45%), Gaps = 26/268 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ-LGFLEAAHDILDDMEL 408
L++G+ K G N + + LL I S +ID L + FLEA ++L++M+
Sbjct: 133 LVDGFCKRG-NVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEA-KEVLEEMKA 190
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
+G D+ TY +L+ K EAE +L++M S + ++VV +S +
Sbjct: 191 SGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGS----GCTPDVVV---YSSIIH--- 240
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+F + L++ A+ +QEMR++ + N+ I CK I +A I +MQE
Sbjct: 241 AFCKSGKLLE----AQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQES 296
Query: 529 -KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNFLQ 585
+ P V T+ ++ G +M + L + R ++G + D+ Y T++ +
Sbjct: 297 GDVLPDVVTYSTVINGLCKSDMLVEAQKL---LDRMCKAG---CNPDVVTYTTIIDGLCK 350
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G E ++ MK+ + + Y +
Sbjct: 351 CGRLEEAEYLLQGMKRAGCAPNVVTYTT 378
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 96/246 (39%), Gaps = 31/246 (12%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G L AA ++L++M+ AG D+ T+ ++TA A L+ M C+
Sbjct: 4 GDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---------GCD 54
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
V + +A +F L + A L++EMRE + N + CK
Sbjct: 55 PNVVTYTALIA----AFARAKKLEE----AMKLLEEMRERGCPPNLVTYNVLVDALCKLS 106
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVS 572
M+G A + ++M E P V TF LV G D L G + + + V+
Sbjct: 107 MVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVT-- 164
Query: 573 RDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY--------KSEFLKHHKHLYR 624
Y L+ + F EV+ MK + D Y K++ ++ + + R
Sbjct: 165 ---YSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLR 221
Query: 625 RLKVSN 630
R+ S
Sbjct: 222 RMAGSG 227
Score = 39.3 bits (90), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 18/228 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I A + LE A +L++M G P + TY L+ A K+ M A+ ++K+M +
Sbjct: 63 LIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGG 122
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
N+ F+ + D F ++ D A L+ M + + ++
Sbjct: 123 FAPNVM-------TFNSLVD---GFCKRGNVDD----ARKLLGIMVAKGMRPNVVTYSAL 168
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I CK + +A ++ M+ + P T+ L++G + + + ++R
Sbjct: 169 IDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQM---LRRMAG 225
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
SG +Y +++ F + G + + M+KQ D + Y +
Sbjct: 226 SGCTP-DVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNT 272
>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 121/316 (38%), Gaps = 34/316 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+ING K G+ + L + E + S +ID+L + + A DI M+
Sbjct: 233 IINGLCKIGETVAAAGLFRKMG-EAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAK 291
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK--- 466
G + TY SL+ +REA A+L +M ++ N+ ++ F + +
Sbjct: 292 GISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEA 351
Query: 467 ------------SASFTDTSSLMDKSDL------AESLIQEMREEAALSTIYKLNSSIYF 508
+ SSLM+ L A L M + ++ N I
Sbjct: 352 RGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILING 411
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
+CK K IG+A +++ M + P + ++ L+ G L R+ L+ ++ N
Sbjct: 412 YCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPD 471
Query: 569 LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY--------KSEFLKHHK 620
L Y LL F + GY + + M+ + + +MY KS LK +
Sbjct: 472 LCT----YSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEAR 527
Query: 621 HLYRRLKVSNARTEAQ 636
L+ L V + Q
Sbjct: 528 KLFSELFVQGLQPNVQ 543
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 17/195 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMEL 408
LINGY K + E L + H + + +ID L QLG L AHD+ +M
Sbjct: 408 LINGYCKAKRIGEAKQLFNEMI--HQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLT 465
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G+ D TY LL + K +A L + M+ + L N MV+ + KS
Sbjct: 466 NGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPN----MVMYNILIDAMCKSR 521
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ + L +E +Q ++ + T + I CK ++ +AL+ +R M+E
Sbjct: 522 NLKEARKL-----FSELFVQGLQPNVQIYT-----TIINGLCKEGLLDEALEAFRNMEED 571
Query: 529 KIRPTVETFYYLVYG 543
P ++ ++ G
Sbjct: 572 GCPPNEFSYNVIIRG 586
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 21/181 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK-- 443
+I+ L ++G A ++ DDM G+ D TY +++ K+ A L ++M +
Sbjct: 198 LINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAG 257
Query: 444 --------SCLVQNLSCEMVVSER---FSEVADKSAS---FTDTSSLMDKSDL-----AE 484
S ++ +L + V+E FS + K S FT S + + A
Sbjct: 258 CQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREAS 317
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+++ EM + I + I FCK + +A + + M EM + P V T+ L+ G+
Sbjct: 318 AMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGY 377
Query: 545 S 545
S
Sbjct: 378 S 378
>gi|414876286|tpg|DAA53417.1| TPA: hypothetical protein ZEAMMB73_373649 [Zea mays]
Length = 561
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 20/169 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I +L + G +E A + D M G M Y SL+ Y K F +A LL +M
Sbjct: 92 LIHSLCKRGMMEDALCMFDRMREKGIRMTVYPYNSLINGYCKHNNFHQARGLLNEMVAKG 151
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTD-TSSLMDKSDLAES--LIQEMREEAALSTIYKL 502
L + AS++ + L K DLA + L +EM A +Y
Sbjct: 152 LTPS-----------------PASYSPLIAGLCRKGDLASAMELHREMTRNAVSGNVYTF 194
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYR 551
+ I FCK + +A +++ +M E + P TF ++ G+ + R
Sbjct: 195 TALISGFCKDGNMDEATRLFHKMMESSLVPNEVTFNVMIEGYCRVGNIR 243
>gi|410110075|gb|AFV61117.1| pentatricopeptide repeat-containing protein 123, partial
[Burroughsia fastigiata]
Length = 348
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 103/225 (45%), Gaps = 24/225 (10%)
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK-SCLVQNLSCEMVVS 457
A ++ +M+ AG ++T+Y +LLT Y + K F EA ++ +MR+ CL+ +C +++
Sbjct: 41 ARSLISEMKTAGVTPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI- 99
Query: 458 ERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGD 517
D + + A+ L MR+ + N+ + + ++ G+
Sbjct: 100 --------------DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLVRVYGDAELFGE 145
Query: 518 ALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL 575
A+ ++R MQ I V T+ ++YG +LE + ++ R IE +
Sbjct: 146 AIHLFRLMQRKNIEQNVVTYNSMIMIYG-KTLEHEKANNLIQEMQSRGIEPNSIT----- 199
Query: 576 YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
Y T++ + + G +R + ++ +D++++++ + + +
Sbjct: 200 YSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYER 244
>gi|359496212|ref|XP_003635178.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Vitis vinifera]
Length = 379
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 26/162 (16%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+++A ++G L++A +LD+ME G D T+ +LL A+Y+ + + E + M+K+
Sbjct: 169 LVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNN 228
Query: 446 LVQNLSC-----EMVVSE-RFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499
+ N+ V+SE R SE + LI EM+ +
Sbjct: 229 VAPNVRSYNAKLRGVISENRMSEAVE--------------------LIDEMKTSGIKPDV 268
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+ LNS + FC + +A + Y + ++ P T+ L+
Sbjct: 269 FTLNSLMKGFCNAGNLEEAKRWYSEIARNELPPVRATYMTLI 310
>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 120/297 (40%), Gaps = 31/297 (10%)
Query: 368 LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK 427
++++E + L S +I L +LG +E A + D G+ + +L++AY +
Sbjct: 178 FAVRRESGKNEQGKLASAMISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSALISAYGR 237
Query: 428 VKMFREAEALLKQMRKSCLVQNLSCEMVVSE-------RFSEVAD------------KSA 468
EA + M+ + L+ NL V + F +V +
Sbjct: 238 SGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRI 297
Query: 469 SFTDTSSLMDKSDLAES---LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+F ++ + L E+ L M ++ I+ N+ + CKG + A +I M
Sbjct: 298 TFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEM 357
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNF 583
I P V T+ ++ G++ + D ++ ++K L V D Y TLL +
Sbjct: 358 PTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMK------FLGVGLDRVSYNTLLSVY 411
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRL 640
+ G FE+ ++V M+ + D + Y + + K YR +V E + R+
Sbjct: 412 AKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQ-YRYDEVRRVFEEMKRGRV 467
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 79/405 (19%), Positives = 155/405 (38%), Gaps = 48/405 (11%)
Query: 167 SNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNC 226
SNG ++PD + FN +L C R G + + M G+ D I + + C
Sbjct: 289 SNG---VQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQD---IFTYNTLLDAVC 342
Query: 227 QRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNP 286
+ ++ + ++ T Y +++ + K +D A + +M
Sbjct: 343 KGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMK--------- 393
Query: 287 KLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRA 346
+ +G + L + +L + L + + E R + ++
Sbjct: 394 ----------FLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYN--- 440
Query: 347 MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
L+ GY K + E+ + +K+ S T S +ID + G + A ++ +
Sbjct: 441 --ALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTY-STLIDVYSKGGLYKEAMEVFREF 497
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ AG D Y +L+ A K + + LL +M K + N+ + + F A
Sbjct: 498 KQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASA 557
Query: 467 SASFTDT--SSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFF--------CKGKMIG 516
D+ ++ + L+ ++QE E A + N I F C+ K G
Sbjct: 558 QCVVDDSGETTALQVESLSSIVVQEAIESQAADK--EDNRIIEIFGKLAAEKACEAKNSG 615
Query: 517 DA-----LKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
L ++++M E+KI+P V TF ++ S + + D ++L
Sbjct: 616 KQEILCILGVFQKMHELKIKPNVVTFSAILNACSRCDSFEDASML 660
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 92/220 (41%), Gaps = 18/220 (8%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G EAA + M G D TY +LL A K A ++ +M ++ N+
Sbjct: 310 GLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTY 369
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
+ + +++V + D A ++ EM+ N+ + + K
Sbjct: 370 STMIDGYAKVG--------------RLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLG 415
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR 573
AL + + M+ IR V T+ L+ G+ Y ++ ++ ++KR G ++ +
Sbjct: 416 RFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKR----GRVSPNL 471
Query: 574 DLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y TL+ + +GG ++ MEV K+ + D ++Y +
Sbjct: 472 LTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSA 511
>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
Length = 661
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 95/203 (46%), Gaps = 24/203 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+IDA + G + A ++ D+M + P+ +TTY ++ + + + EA+L +M++
Sbjct: 438 LIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQG 497
Query: 446 LVQNLSCEMVV------SERFSEVAD-----KSASFTDTSSLMDK----------SDLAE 484
LV N+ + S RF E D K+ + ++ +D A
Sbjct: 498 LVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHAL 557
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
++++ MR + ++ LNS I F + + I +A + + M+E +RP V T+ L+
Sbjct: 558 NVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKAL 617
Query: 545 SSLEMYRDITILWGDIKRNIESG 567
+E + + +++ ++ I SG
Sbjct: 618 IRVEQFEKVPVIYEEM---ITSG 637
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 116/282 (41%), Gaps = 19/282 (6%)
Query: 332 LVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALI 391
L F G++ RA L+ GY K G +L + + + E+T S ++DA
Sbjct: 280 LEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATY-SLLVDAYT 338
Query: 392 QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
+ G E+A +L +ME G S + +L + +++A A+L++M S + +
Sbjct: 339 RAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRH 398
Query: 452 CEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK 511
V+ + F + + MD D MREE + N+ I CK
Sbjct: 399 FYNVMIDTFGK-------YNCLGHAMDAFD-------RMREEGIEPDVVTWNTLIDAHCK 444
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV 571
G A++++ M+E T+ ++ + + + + ++K E G L
Sbjct: 445 GGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMK---EQG-LVP 500
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ Y TL+ + + G F+ ++ I MK + MY +
Sbjct: 501 NIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHA 542
>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
Length = 660
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/372 (20%), Positives = 145/372 (38%), Gaps = 74/372 (19%)
Query: 311 LQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSI 370
+ ++ E+L +S + K ++F N LL I+G + K E++ L+
Sbjct: 59 MNVLDEMLLPESEFRPNDKTAGIVFNN--LLK--------IDGLEGRVKEDEIAGLVSKF 108
Query: 371 KKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKM 430
K H+ F ++ + +I L + G A +ILD++ + D+ +LLT K +
Sbjct: 109 GK-HNIFPDTIALTQLISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKARE 167
Query: 431 FREAEALLKQMRKS----------------CLVQNLSCEMVVSERFSEVADKSASFTDTS 474
F + L+++M+ C + + + V E+ +++ F
Sbjct: 168 FGKMNLLMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPD 227
Query: 475 SLM-----------DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
++M + + A L+ +MR + T N I +C+ I A K++
Sbjct: 228 TIMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFN 287
Query: 524 RMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITILWGDIKRNIESGVL------- 569
M+ +I P V T LV G +++E +R + G N+ V
Sbjct: 288 EMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFR-VMQQKGLKGNNVTYTVFINAFCNV 346
Query: 570 -----------AVSRD-------LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+S+D +Y TL+ Q G + V+ +K+ +D++ Y
Sbjct: 347 NNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCY 406
Query: 612 K---SEFLKHHK 620
SEF K +K
Sbjct: 407 NVLISEFCKKNK 418
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 27/208 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDV-IDALIQLGFLEAAHDILDDMEL 408
LI G + G+ + S ++ +K+ F +C +V I + L+ A + L++MEL
Sbjct: 374 LICGLAQAGRLDDASSVVSKLKEA--GFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMEL 431
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS-----------------CLVQNLS 451
AG DS TY +L++ + K+ F+ A +K+M + CL N+
Sbjct: 432 AGVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNID 491
Query: 452 CEMVVSERFSEVADKSASFT-------DTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
+ + + + VA K T D+ + + A SL+ +M+ + NS
Sbjct: 492 EAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNS 551
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRP 532
+ A K+ RM E P
Sbjct: 552 IFKALRDKNWLDKAFKLMDRMVEQACNP 579
>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
Length = 1245
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 103/262 (39%), Gaps = 19/262 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++NG + G S L+ LL +E + + S +ID+L + G ++AA + +ME
Sbjct: 189 IVNGICRSGDTS-LALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETK 247
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G TY SL+ K + + LLK M +V N+ V+ + F +
Sbjct: 248 GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG----- 302
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
K A L +EM I N+ + +C + +A + M K
Sbjct: 303 ---------KLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 353
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
P + TF L+ G+ ++ D ++ RNI L + Y L+ F Q G
Sbjct: 354 CSPDIVTFTSLIKGYCMVKRVDDGMKVF----RNISKRGLVANAVTYSILVQGFCQSGKI 409
Query: 590 ERVMEVIGYMKKQNMYVDKLMY 611
+ E+ M + D + Y
Sbjct: 410 KLAEELFQEMVSHGVLPDVMTY 431
>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
Length = 661
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 95/203 (46%), Gaps = 24/203 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+IDA + G + A ++ D+M + P+ +TTY ++ + + + EA+L +M++
Sbjct: 438 LIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQG 497
Query: 446 LVQNLSCEMVV------SERFSEVAD-----KSASFTDTSSLMDK----------SDLAE 484
LV N+ + S RF E D K+ + ++ +D A
Sbjct: 498 LVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHAL 557
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
++++ MR + ++ LNS I F + + I +A + + M+E +RP V T+ L+
Sbjct: 558 NVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKAL 617
Query: 545 SSLEMYRDITILWGDIKRNIESG 567
+E + + +++ ++ I SG
Sbjct: 618 IRVEQFEKVPVIYEEM---ITSG 637
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 116/282 (41%), Gaps = 19/282 (6%)
Query: 332 LVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALI 391
L F G++ RA L+ GY K G +L + + + E+T S ++DA
Sbjct: 280 LEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATY-SLLVDAYT 338
Query: 392 QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
+ G E+A +L +ME G S + +L + +++A A+L++M S + +
Sbjct: 339 RAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRH 398
Query: 452 CEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK 511
V+ + F + + MD D MREE + N+ I CK
Sbjct: 399 FYNVMIDTFGK-------YNCLGHAMDAFD-------RMREEGIEPDVVTWNTLIDAHCK 444
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV 571
G A++++ M+E T+ ++ + + + + ++K E G L
Sbjct: 445 GGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMK---EQG-LVP 500
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ Y TL+ + + G F+ ++ I MK + MY +
Sbjct: 501 NIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHA 542
>gi|255661112|gb|ACU25725.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 424
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHH--SFGESTLCSDVIDALIQL----GFL 396
S+ M KL N K NS LSW S+ + + GE + D+++ + + G L
Sbjct: 219 SSPYMDKLAN---KFTTNSHLSWQSFSLARGVRVMANGEDSFDIDMVNTYLSIFLAKGKL 275
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F+EA +L M ++ +++ V+
Sbjct: 276 SVACKLFEIFTTMGVDPVSYTYNSIMSSFVKKGYFKEAFGVLHTMGETVYPADIATYNVI 335
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 336 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 381
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+ K++++M+ I P V T+ L+ HS +D
Sbjct: 382 EVNKLFQQMKASGINPDVVTYNTLIEVHSKAGRLKD 417
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + E A ++++ME
Sbjct: 57 LIDGLYKNGRAEAAYTMFLDLKRKGNNFVDGITYSIVILHLCKEDQFEEALQLVEEMEAR 116
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-----SCEMVVSERFSEVA 464
G +D T SLL Y+ + E L+K +R LV +L + E + S+
Sbjct: 117 GFVVDLVTLTSLLITLYRRGQWDRTEQLMKHIRDGNLVPSLLKWKSAMESSIRTPQSKKR 176
Query: 465 DKSASFTDTSSLMDKSDLAES 485
D + F +++D +L +S
Sbjct: 177 DFTPMFPPVDNILDVLNLTKS 197
>gi|410110061|gb|AFV61110.1| pentatricopeptide repeat-containing protein 123, partial
[Acantholippia seriphioides]
Length = 416
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 124/268 (46%), Gaps = 23/268 (8%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 15 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 72
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ +G D Y +++ + K K+FREA +L+ +M+ S ++ N + + + E
Sbjct: 73 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLLTMYVE---- 128
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ F + A S+ EMRE L + N I + + M +A K++ M+
Sbjct: 129 NKKFLE----------ALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 178
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQ 585
+M I P V ++ L+ + E++ + L+ ++R NIE V+ Y ++++ + +
Sbjct: 179 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YNSMIMIYGK 233
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ +I M+ + + + + Y +
Sbjct: 234 TLEHEKANNLIQEMQSRGIEPNSITYST 261
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 10 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 69
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EM+ + ++ + + +
Sbjct: 70 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLLTMYVEN 129
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 130 KKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 188
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 189 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHE-KANNL 243
Query: 632 RTEAQSK 638
E QS+
Sbjct: 244 IQEMQSR 250
>gi|255661188|gb|ACU25763.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
Length = 426
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 130/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + ++ N L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E + + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYER 301
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR + ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|255661174|gb|ACU25756.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 426
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + + + L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
Length = 745
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 27/198 (13%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVI------DALIQLGFLEAAHDIL 403
LI+GY K GK +E + H++ + + +V+ D L + G ++AA+++L
Sbjct: 437 LIDGYCKRGKMAEAFQM-------HNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELL 489
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
+M G +++ TY SL+ K +A + M +CL ++ + + +
Sbjct: 490 HEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKS 549
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
D D A SL+QEM ++ TI N + FC + K+
Sbjct: 550 GDL--------------DRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLD 595
Query: 524 RMQEMKIRPTVETFYYLV 541
M E I P T+ L+
Sbjct: 596 WMLEKNIHPNAATYNSLM 613
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 103/257 (40%), Gaps = 27/257 (10%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
+ L + V+ G L +A D+M+ G D TY +++ + EAE LL
Sbjct: 360 DEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLL 419
Query: 439 KQM--RK--------SCLVQNLSCEMVVSERFS--------EVADKSASFTD-TSSLMDK 479
++M R+ + L+ ++E F V ++T T L +
Sbjct: 420 QEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQ 479
Query: 480 SDL--AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
D+ A L+ EM + NS I CK + A++ M ++P V T+
Sbjct: 480 GDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTY 539
Query: 538 YYLVYG-HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVI 596
L+ S ++ R ++L + + I+ ++ Y L+ F G E +++
Sbjct: 540 TTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVT-----YNVLMNGFCMSGRVEGGKKLL 594
Query: 597 GYMKKQNMYVDKLMYKS 613
+M ++N++ + Y S
Sbjct: 595 DWMLEKNIHPNAATYNS 611
>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 123/286 (43%), Gaps = 28/286 (9%)
Query: 350 LINGYKKHGKNSE-LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
+IN G+ S+ L+W L I++ + + VI+A + G + A + D ++
Sbjct: 97 VINACCIRGRTSDALAWFNLMIERGCNP--TVVTFNTVINAFCKEGNVVEARKLFDGLKE 154
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVSE--RFSEVAD 465
G ++ Y +L+ Y K++ +A L ++MRK + + ++ ++VS ++ D
Sbjct: 155 MGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREED 214
Query: 466 KSASFTDTS--------SLMDKS----------DLAESLIQEMREEAALSTIYKLNSSIY 507
D S SL D S D A + +M E+ +I NS I
Sbjct: 215 GDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIA 274
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESG 567
+ + + A + Y+ M + P+ T L+ G S ++ T L G + IE G
Sbjct: 275 AYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQM---IEKG 331
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
L+V+ + LL F + G + G M+++ ++ D + + +
Sbjct: 332 -LSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSA 376
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 21/205 (10%)
Query: 377 FGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEA 436
F + S ID L + G +E A+++ +M G ++ Y SL+ + K EA
Sbjct: 368 FPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALK 427
Query: 437 LLKQMRKSCLVQNL-SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAA 495
L K MR L+ ++ + M++ + +SA ++ +M +
Sbjct: 428 LEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAI---------------NVFMDMHQTGL 472
Query: 496 LSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH-SSLEMYRDIT 554
I N+ I +CK + +A + RM P + T+ ++G SS M R +
Sbjct: 473 SPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVL 532
Query: 555 ILWGDIKRNIESGVLAVSRDLYETL 579
+L + +G+L+ S TL
Sbjct: 533 ML----DELVSAGILSFSFACPPTL 553
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 99/237 (41%), Gaps = 32/237 (13%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-R 442
S VID + G + A D+ +M G P D TY S++ A K + +AEA L+QM
Sbjct: 223 STVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVN 282
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
K L N + ++ ++ T + A + +EMR + L + L
Sbjct: 283 KGVLPNNWTYNNLIY-----------GYSSTGQWKE----AVRVFKEMRRHSILPDVVTL 327
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW----G 558
+ + CK I +A ++ M P V ++ ++ G+++ D+T L+ G
Sbjct: 328 SMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLG 387
Query: 559 DIKRNIESGVLAVSRDLY--ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
D ++ D+Y L+ + G ++ M + M+ + D + Y++
Sbjct: 388 D----------GIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 434
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 149/354 (42%), Gaps = 47/354 (13%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS----IIILAQIHEMNCQR 228
I PD FN+++ A G K I M GV D + I L +I +M+
Sbjct: 390 IAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD--- 446
Query: 229 DELKKFKCYIDQLSTP--FAHH--YQQF--YESLLSLHFKFDDIDAAGELILDMNRYREP 282
D ++KF IDQ P +A+H Q F + SLL +I G + LD+ +
Sbjct: 447 DAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG-MHLDIVFFSSI 505
Query: 283 LPN-PKLRQ--DAQKPYLISIGSPNLRCGL-KLQIMPELLEKDSILKMEGKQELVLFR-- 336
+ N KL + DAQ + +++ GL ++ +L L + ++ L +F
Sbjct: 506 INNLCKLGRVMDAQNIFDLTV-----NVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAM 560
Query: 337 -NGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQ 392
+ + ++ L+NGY K G+ E LS+ +E G + L + +ID L +
Sbjct: 561 VSAGIEPNDVVYGTLVNGYCKIGRIDEG----LSLFREMLQKGIKPSTILYNIIIDGLFE 616
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL------ 446
G A +M +G M+ TY +L +K + F EA L K++R +
Sbjct: 617 AGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIIT 676
Query: 447 VQNLSCEMVVSERFSEVADKSASFTD--------TSSLMDKSDLAESLIQEMRE 492
+ + M + R E D AS + T S+M + + E L++E +
Sbjct: 677 LNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAED 730
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/214 (19%), Positives = 85/214 (39%), Gaps = 18/214 (8%)
Query: 337 NGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL 396
N +L +N LI GY G+ E + +++ H + S ++ +L + G +
Sbjct: 282 NKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR-HSILPDVVTLSMLMGSLCKYGKI 340
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
+ A D+ D M + G + +Y +L Y + L M + ++ V+
Sbjct: 341 KEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVL 400
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ ++ ++DK A + EMR+ + + I C+ +
Sbjct: 401 IKAYANCG-----------MLDK---AMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 446
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYG---HSSL 547
DA++ + +M + + P ++ L+ G H SL
Sbjct: 447 DAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSL 480
>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 624
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 99/222 (44%), Gaps = 18/222 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
V++ L + G +E + ++ + + G ++ TY +++ AY K + F E +LK M+K
Sbjct: 230 VVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDG 289
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+V N V E++ K+ +D AE L EMRE S ++ S
Sbjct: 290 VVYN----KVTYTLLMELSVKNGKMSD----------AEKLFDEMRERGIESDVHVYTSL 335
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I + C+ + A ++ + E + P+ T+ L+ G + IL + ++
Sbjct: 336 ISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNE----MQ 391
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
S + +++ ++ TL+ + + G + + M+++ D
Sbjct: 392 SKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQAD 433
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID + ++G + AA ++++M+ G + + +L+ Y + M EA + M +
Sbjct: 370 LIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKG 429
Query: 446 LVQNL-SCEMVVS-----ERFSE------------VADKSASFTDTSSLMDKS---DLAE 484
++ +C + S +R+ E V + S+T+ + K + A+
Sbjct: 430 FQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAK 489
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
L EM + N IY +CK I +A K+ M+ + P T+ L++G
Sbjct: 490 RLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGE 549
>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 830
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 119/270 (44%), Gaps = 30/270 (11%)
Query: 350 LINGYKKHGKNSELSW-----LLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
+++ Y K G+ SW LL ++ + F E T CS VI A + G L+ A L
Sbjct: 257 MLDVYGKMGR----SWGRILELLDEMRSKGLEFDEFT-CSTVISACGREGMLDEARKFLA 311
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVSERFSEV 463
+++L G+ + Y S+L + K ++ EA ++LK+M +C +++ ++E+
Sbjct: 312 ELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSIT--------YNEL 363
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
A A++ L D ++I M + + + I + K DAL+++
Sbjct: 364 A---ATYVRAGFL----DEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFS 416
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNF 583
+M+++ P V T+ ++ D+ + ++K N A +R + T+L
Sbjct: 417 KMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLN----GCAPNRATWNTMLAVC 472
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ G V +V+ MK DK + +
Sbjct: 473 SEEGKHNYVNKVLREMKNCGFEPDKDTFNT 502
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 91/209 (43%), Gaps = 26/209 (12%)
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL---SCEMVVSER 459
D ++ G+ D S+L+ + + KMF +A +L + + L NL +C M + R
Sbjct: 625 FDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVR 684
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
E AE +++ ++ + N+ I FC+ ++ +A+
Sbjct: 685 EDECWK-----------------AEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAI 727
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDIT-ILWGDIKRNIESGVLAVSRDLYET 578
++ M I+PT+ T+ + G++ +E++ + ++ I+ N L Y+
Sbjct: 728 RVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELT-----YKI 782
Query: 579 LLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
L+ + + G E M+ + +K+ ++ D
Sbjct: 783 LVDGYCKAGKHEEAMDFVTKIKEIDISFD 811
>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
[Vitis vinifera]
Length = 811
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 105/240 (43%), Gaps = 29/240 (12%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMV 455
E A +L +M+LAG D TY +LL Y K + +EA +L++M C ++ +
Sbjct: 288 EEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSL 347
Query: 456 VS---------------ERFSEVADKSASFTDTSSL-----MDKSDLAESLIQEMREEAA 495
+S + E K FT T+ L K A + +EMR E
Sbjct: 348 ISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGC 407
Query: 496 LSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMYRDI 553
I N+ I + +K++ ++ + P + T+ L V+G + ++ ++
Sbjct: 408 KPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMD--SEV 465
Query: 554 TILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ ++ ++KR +G + RD + TL+ ++ + G F++ M V M + + D Y +
Sbjct: 466 SGVFKEMKR---AGFVP-ERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNA 521
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/329 (19%), Positives = 141/329 (42%), Gaps = 36/329 (10%)
Query: 315 PELLEKDSILKMEGKQE-----LVLFRNGKLLHSNRAMAK---LINGYKKHGKNSELSWL 366
P + ++++KM G + + +F + K + + L++ + ++G +SE+S +
Sbjct: 409 PNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGV 468
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
+K+ T + +I + + G + A + M AG D ++Y ++L A
Sbjct: 469 FKEMKRAGFVPERDTF-NTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALA 527
Query: 427 KVKMFREAEALLKQMRKS-CLVQNLS-CEMV---------------VSERFSEVADKSAS 469
+ +++++E +L +M+ C L+ C ++ E +S + + A
Sbjct: 528 RGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAV 587
Query: 470 FTDTSSLMD-KSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
T L++ K DL E E+R+ I LN+ + + + +M+ A +I M
Sbjct: 588 LLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCM 647
Query: 526 QEMKIRPTVETFYYLVYGHS-SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
+ P++ T+ L+Y +S S R IL + + I +++ Y T++ +
Sbjct: 648 KRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIIS-----YNTVIYAYC 702
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ G V+ M++ D + Y +
Sbjct: 703 RNGRMRDASRVLSEMRESGPAPDIITYNT 731
Score = 45.4 bits (106), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 78/419 (18%), Positives = 165/419 (39%), Gaps = 89/419 (21%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIH-------EMN 225
IKPD + +L + G I E M G + + L ++H EM
Sbjct: 372 IKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMM 431
Query: 226 CQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPN 285
+++K F+C D ++ + +LLS+ F + +D+ + + +P
Sbjct: 432 KVFEDIKTFQCSPDIVT----------WNTLLSV-FGQNGMDSEVSGVFKEMKRAGFVP- 479
Query: 286 PKLRQDAQKPYLISIGSPNLRCG------------LKLQIMPELLEKDSILKMEGKQELV 333
++ ++ S RCG L+ + P+L +++L
Sbjct: 480 -------ERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLA-------A 525
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES-------TLCSDV 386
L R G S + +A++ +G K +EL++ L H++ L ++
Sbjct: 526 LARGGLWKQSEKVLAEMKDG---RCKPNELTYCSL-----LHAYANGKEIERMCALAEEI 577
Query: 387 IDALIQ--------LGFLEAAHDILDDMELA-------GHPMDSTTYKSLLTAYYKVKMF 431
+I+ L + + D+L + E A G D TT ++++ Y + +M
Sbjct: 578 YSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMV 637
Query: 432 REAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491
+A +L M++ +L+ + +S +SA+F + +E +++E+
Sbjct: 638 AKANEILDCMKRGGFTPSLTTYNSLMYMYS----RSANF----------ERSEEILREIL 683
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMY 550
+ I N+ IY +C+ + DA ++ M+E P + T+ + +++ M+
Sbjct: 684 AKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMF 742
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 97/232 (41%), Gaps = 22/232 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I A + G LE A ++ + M G D TY +LL+ + K + A + ++MR
Sbjct: 345 NSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRN 404
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
N+ F+ + + + +M + ++++ I N
Sbjct: 405 EGCKPNICT-------FNALIKMHGNRGKFTEMM-------KVFEDIKTFQCSPDIVTWN 450
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ + F + M + +++ M+ P +TF L+ +S + ++ KR
Sbjct: 451 TLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVY---KRM 507
Query: 564 IESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+E+G V+ DL Y +L +GG +++ +V+ MK ++L Y S
Sbjct: 508 LEAG---VNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCS 556
>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic [Vitis vinifera]
Length = 867
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 109/268 (40%), Gaps = 26/268 (9%)
Query: 368 LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK 427
++++E + L S +I L +LG +E A ++ + G+ + +L++AY +
Sbjct: 173 FAVRREQRRNEQGKLASAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGR 232
Query: 428 VKMFREAEALLKQMRKSCLVQNLSCEMVVSE----------RFSEVADK---------SA 468
EA + + M+ S L NL V + R +E+ D+
Sbjct: 233 SGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRI 292
Query: 469 SFTDTSSLMDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+F ++ + L A +L EM I+ N+ + CKG + A +I M
Sbjct: 293 TFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEM 352
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ 585
I P V T+ ++ G++ + L+ ++K + + R Y TLL + +
Sbjct: 353 PRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMK----FASIGLDRVSYNTLLSIYAK 408
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G FE + V M+ + D + Y +
Sbjct: 409 LGRFEEALNVCKEMESSGIKKDAVTYNA 436
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 89/427 (20%), Positives = 162/427 (37%), Gaps = 52/427 (12%)
Query: 166 KSNGAELIKPDTMIFNLVLHACVRFGSSL-KGQHIMELMSQTGVVADAHSIIILAQIHEM 224
KS+G +KP+ + +N V+ AC + G + I + M + GV D + L +
Sbjct: 247 KSSG---LKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAV--- 300
Query: 225 NCQRDELKKFKCYIDQLSTPFAHHYQQ---FYESLLSLHFKFDDIDAAGELILDMNRYRE 281
C R L ++ + S +Q Y +LL K +D A +++ +M R +
Sbjct: 301 -CGRGGL--WEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPR-KH 356
Query: 282 PLPNPKLRQDAQKPY-----------------LISIGSPNLRCGLKLQIMPELLEKDSIL 324
+PN Y SIG + L I +L + L
Sbjct: 357 IMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEAL 416
Query: 325 KMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCS 384
+ + E + + ++ L+ GY K GK E+ + +K E F S
Sbjct: 417 NVCKEMESSGIKKDAVTYN-----ALLGGYGKQGKYEEVKRVFEEMKAE-RIFPNLLTYS 470
Query: 385 DVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
+ID + G + A ++ + + AG D Y +L+ A K + A + L +M K
Sbjct: 471 TLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKE 530
Query: 445 CLVQNLSCEMVVSERFSEVA----------DKSASFTDTSSLMDKSDLAESLIQEMREEA 494
+ N+ + + F + + S +SSL D ES + + +
Sbjct: 531 GIRPNVVTYNSIIDAFGRSGSAECVIDPPYETNVSKMSSSSLKVVEDATESEVGDKEDNQ 590
Query: 495 ALSTIYKLNSSIYFFCKGKMIGDA-----LKIYRRMQEMKIRPTVETFYYLVYGHSSLEM 549
+ +L + K + G L ++ +M E+ I+P V TF ++ S
Sbjct: 591 IIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDIKPNVVTFSAILNACSRCNS 650
Query: 550 YRDITIL 556
+ D ++L
Sbjct: 651 FEDASML 657
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 20/221 (9%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G EAA ++ +M G D TY +LL A K A ++ +M + ++ N
Sbjct: 305 GLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPN---- 360
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
VV+ +S V D A + D A +L EM+ + N+ + + K
Sbjct: 361 -VVT--YSTVIDGYAK-------AGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLG 410
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVS 572
+AL + + M+ I+ T+ L+ G+ Y ++ ++ ++K I +L
Sbjct: 411 RFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLT-- 468
Query: 573 RDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y TL+ + +GG ++ MEV KK + D ++Y +
Sbjct: 469 ---YSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSA 506
>gi|255661180|gb|ACU25759.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 426
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + ++ N L V +++F
Sbjct: 71 KKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + +D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYER 301
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR + ++ + + +
Sbjct: 68 SRLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|255661142|gb|ACU25740.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 426
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 128/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLV------QNLSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + + L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR T ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|410110069|gb|AFV61114.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
lycioides]
Length = 429
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 130/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 15 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 72
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + ++ N L V +++F
Sbjct: 73 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKF 132
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E + + L+D + A+ L MR+ + N+
Sbjct: 133 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 192
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 193 LRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 251
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 252 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYER 303
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 10 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 69
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR + ++ + + +
Sbjct: 70 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVEN 129
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 130 KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 188
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 189 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHE-KANNL 243
Query: 632 RTEAQSK 638
E Q++
Sbjct: 244 IQEMQNR 250
>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
Length = 668
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 118/282 (41%), Gaps = 19/282 (6%)
Query: 332 LVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALI 391
L F G++ RA L+ GY + G +L + + + E+T S ++DA
Sbjct: 287 LEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATY-SLLVDAYT 345
Query: 392 QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
+ G E+A +L +ME G S + +L + +++A A+L++M+ S + +
Sbjct: 346 RAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRH 405
Query: 452 CEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK 511
V+ + F + + MD D MREE + N+ I CK
Sbjct: 406 FYNVMIDTFGK-------YNCLGHAMDAFD-------RMREEEIEPDVVTWNTLIDAHCK 451
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV 571
G A++++ M+E P T+ ++ E + + + ++K E G L
Sbjct: 452 GGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMK---EQG-LVP 507
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ Y TL+ + + G ++ ++ I MK + MY +
Sbjct: 508 NIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHA 549
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 14/205 (6%)
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
L + A+ LI+ G+ +E L L + + ++ +++G L+ A
Sbjct: 259 LTPRSNAVTALISALGSAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNA 318
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
+LD+M G D TY L+ AY + + A LLK+M + + S
Sbjct: 319 EQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPS-------SYV 371
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
FS + A F D A ++++EM+ + N I F K +G A+
Sbjct: 372 FSRIL---AGFRDRGDWQK----AFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAM 424
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGH 544
+ RM+E +I P V T+ L+ H
Sbjct: 425 DAFDRMREEEIEPDVVTWNTLIDAH 449
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 94/203 (46%), Gaps = 24/203 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+IDA + G + A ++ ++M + P +TTY ++ + + + EA+L +M++
Sbjct: 445 LIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQG 504
Query: 446 LVQNLSCEMVV------SERFSEVAD-----KSASFTDTSSLMDK----------SDLAE 484
LV N+ + S R+ E D K+ + ++ +D A
Sbjct: 505 LVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHAL 564
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
++++ M+ + +I LNS I F + + + +A + + M+E +RP V T+ L+
Sbjct: 565 NVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKAL 624
Query: 545 SSLEMYRDITILWGDIKRNIESG 567
+E + + +++ ++ I SG
Sbjct: 625 IRVEQFDKVPVIYEEM---ITSG 644
>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 636
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 118/269 (43%), Gaps = 31/269 (11%)
Query: 366 LLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY 425
+L +I ++++F + ++DAL + G L+ A ++L M G + TY SL+ Y
Sbjct: 270 VLKNINPDYYTF------NILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGY 323
Query: 426 YKVKMFREAEALLKQMRK---------SCLVQNLSCEM-VVSE--------RFSEVADKS 467
V +A+ +L + + C + N C++ +V E +F +A
Sbjct: 324 CLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDK 383
Query: 468 ASFTDTSSLMDKS---DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
++ + KS A L+ EM + + I+ N I CK + A+ + ++
Sbjct: 384 VTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKK 443
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
+++ I+P + TF L+YG + ++ D+ +++ S +V+ Y ++
Sbjct: 444 IKDQGIQPDMYTFNILIYGLCKVGRLKNAQ----DVFQDLLSKGYSVNAWTYNIMVNGLC 499
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ G F+ ++ M + D + Y++
Sbjct: 500 KEGLFDEAEALLSKMDDNGIIPDAVTYET 528
>gi|410110067|gb|AFV61113.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
herrerae]
Length = 433
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 124/268 (46%), Gaps = 23/268 (8%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 16 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 73
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ +G D Y +++ + K K+FREA AL+ +M+ + ++ N + + + E
Sbjct: 74 KRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVE---- 129
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ F + A S+ EMRE L + N I + + M +A K++ M+
Sbjct: 130 NKKFIE----------ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 179
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQ 585
+M I P V ++ L+ + E++ + L+ ++R NIE V+ Y ++++ + +
Sbjct: 180 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YNSMMMIYGK 234
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ +I M+ + + + + Y +
Sbjct: 235 TLEHEKANNLIQEMQNRGIEPNSITYST 262
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 108/257 (42%), Gaps = 28/257 (10%)
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
D+M D TY +L+T + K +F A + L++M + + +L + E ++
Sbjct: 1 DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60
Query: 464 ADKSASFTDTSSL------------------MDKSDL---AESLIQEMREEAALSTIYKL 502
D S + + S L K+ L A +LI EM+ +
Sbjct: 61 CDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASY 120
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIK 561
++ + + + K +AL ++ M+E+K + T ++ + L M ++ + WG K
Sbjct: 121 STLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKH 621
IE V++ Y TLL + F + + M+++N+ + + Y S + + K
Sbjct: 181 MGIEPNVVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKT 235
Query: 622 LYRRLKVSNARTEAQSK 638
L K +N E Q++
Sbjct: 236 LEHE-KANNLIQEMQNR 251
>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
Length = 1131
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 102/245 (41%), Gaps = 24/245 (9%)
Query: 369 SIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV 428
I++ H+F S +++ I+ G + A D+ DM+ AG P + TY +L+ Y K
Sbjct: 321 GIERNVHTF------SALMNVCIKCGQYKLALDVYRDMQAAGCPANVVTYNTLIDVYGKS 374
Query: 429 KMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQ 488
+ EA A+L+QM++ ER V + + ++ A + +
Sbjct: 375 GQWEEALAVLEQMKR--------------ERIQPVTRTFNTLMIACNTSNQWQEALRVYE 420
Query: 489 EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548
+M + N+ I KG + L +++ M + +V T+ L+
Sbjct: 421 QMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAG 480
Query: 549 MYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDK 608
++ L+ +++ E V V Y +L+ QG +E+ EV M++Q D
Sbjct: 481 EWKLALQLFEEMRG--EGCVPNVIS--YNSLITACAQGAQWEKAAEVFEQMQRQGCRPDV 536
Query: 609 LMYKS 613
+ Y +
Sbjct: 537 VSYTA 541
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 17/203 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+ Y K G+ E +L +K+E T + +I + EA + + M +
Sbjct: 367 LIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALR-VYEQMAAS 425
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSA 468
HP ++TTY +L++A+ K + A+ K+M +K C ++ ++S +K+
Sbjct: 426 SHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLIS-----ACEKAG 480
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ LA L +EMR E + + NS I +G A +++ +MQ
Sbjct: 481 EW----------KLALQLFEEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQ 530
Query: 529 KIRPTVETFYYLVYGHSSLEMYR 551
RP V ++ L+ + +R
Sbjct: 531 GCRPDVVSYTALIQAYERGGQWR 553
>gi|255661212|gb|ACU25775.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 426
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G + LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDDALSWL--QKMEQDRVPGDLVLYSNLIELSRKLYDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y S++ + K K+FREA +L+ +MR +V + L V +++F
Sbjct: 71 KRSGIVPDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLLTMYVENQKF 130
Query: 461 SEVADKSASFTDTSSLMDKS------------DL---AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + D+ A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYG-KTLEHEKANNLIQEMHSRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D ++Y++ + + +
Sbjct: 250 IEPNAIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYER 301
>gi|410110077|gb|AFV61118.1| pentatricopeptide repeat-containing protein 123, partial
[Coelocarpum swinglei]
Length = 440
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 124/268 (46%), Gaps = 23/268 (8%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 19 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 76
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ +G D Y +++ + K K+FR+A +L+ +MR + ++ N S + + E
Sbjct: 77 KRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNASSYSALLTMYVE---- 132
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ F + A S+ EMRE L + N I + + M +A K++ M+
Sbjct: 133 NKKFLE----------ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 182
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQ 585
+M I P V ++ L+ + E++ + L+ ++R NIE V+ Y ++++ + +
Sbjct: 183 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YNSMMMIYGK 237
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ +I M+ + + + + Y +
Sbjct: 238 TLEHEKANNLIQEMQNRGIEPNSITYST 265
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 109/259 (42%), Gaps = 28/259 (10%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
+ D+M D TY +L+T + K +F A + L++M + + +L + E
Sbjct: 2 LFDEMREKALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61
Query: 462 EVADKSASFTDTSSL------------------MDKSDL---AESLIQEMREEAALSTIY 500
++ D S + + S L K+ L A SLI EMR +
Sbjct: 62 KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNAS 121
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGD 559
++ + + + K +AL ++ M+E+K + T ++ + L M ++ + WG
Sbjct: 122 SYSALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181
Query: 560 IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHH 619
K IE V++ Y TLL + F + + M+++N+ + + Y S + +
Sbjct: 182 RKMGIEPNVVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 236
Query: 620 KHLYRRLKVSNARTEAQSK 638
K L K +N E Q++
Sbjct: 237 KTLEHE-KANNLIQEMQNR 254
>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 101/229 (44%), Gaps = 20/229 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID + G + A ++ M G + TY L+ ++K + RE + + M++
Sbjct: 197 TTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKR 256
Query: 444 SCLVQN-LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
S +V N + ++SE ++ ++DK A + EMRE+ +
Sbjct: 257 SGIVPNAYAYNCLISEYCND------------GMVDK---AFKVFAEMREKGIACGVMTY 301
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
N I C+GK G+A+K+ ++ ++ + P + T+ L+ G + L+ +K
Sbjct: 302 NILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKS 361
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ S L Y TL+ + + ++++ M+++ + K+ Y
Sbjct: 362 SGLSPTLVT----YNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTY 406
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/159 (18%), Positives = 74/159 (46%), Gaps = 14/159 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+ + +++A + + ++ +G TY +L+ Y KV+ A L+K+M + C
Sbjct: 339 LINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC 398
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ + ++ + F+ + + + + SLM+KS L +Y +
Sbjct: 399 IAPSKVTYTILIDAFARL-NHTEKACEMHSLMEKSGLVPD-------------VYTYSVL 444
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
++ C + +A K+++ + EM ++P + +++G+
Sbjct: 445 LHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGY 483
>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like, partial [Cucumis sativus]
Length = 602
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 100/231 (43%), Gaps = 20/231 (8%)
Query: 379 ESTLCS--DVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEA 436
E +CS V+D L + G + A ++D++ G TY +LL Y ++K
Sbjct: 185 EIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNE 244
Query: 437 LLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAAL 496
+L M K+ + N++ ++ E +S + K + AE L EM ++
Sbjct: 245 ILSLMEKNVVDYNVTTYTMLIEWYSRSS--------------KIEEAEKLFDEMLKKGIE 290
Query: 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
+Y S I + CK + A ++ M E ++ P T+ L+ G + ++
Sbjct: 291 PDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMM 350
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
D ++S + V+R ++ TL+ + + G + + + M+++ +D
Sbjct: 351 VND----MQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEID 397
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 124/302 (41%), Gaps = 46/302 (15%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+IN K G N + +++L E + +I+ + G ++AA +++DM+
Sbjct: 299 IINWNCKFG-NMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSK 357
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVS-----ERFSE- 462
G ++ + +L+ Y K M EA L M+ K + +C ++ S R E
Sbjct: 358 GVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEA 417
Query: 463 -----------VADKSASFTDTSSLMD----KSDLAES--LIQEMREEAALSTIYKLNSS 505
VA SF S L+D + + AE+ L + M ++ ++ N+
Sbjct: 418 KRLLLTMEERGVAPNVVSF---SILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAF 474
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH-------SSLEMYRDITILWG 558
I +CK + +A K+ MQE + P T+ L+ G +LE++ ++ L
Sbjct: 475 IERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQL-- 532
Query: 559 DIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKH 618
+ RN+ + Y ++ + G + ++ M K+ + D +Y S
Sbjct: 533 GLNRNVVT---------YTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASL 583
Query: 619 HK 620
HK
Sbjct: 584 HK 585
>gi|449507432|ref|XP_004163031.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Cucumis sativus]
Length = 1061
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 115/277 (41%), Gaps = 20/277 (7%)
Query: 340 LLHSNRAMAKLINGYKKHGKN-SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEA 398
+ H NR LI G + ++ + W+L + H S +I LG ++
Sbjct: 108 IFHRNRLWNLLIRGICVNKEDPGKALWVLQDCFRNHAILPSSFTFCVLIHKFCSLGMMDK 167
Query: 399 AHDILDDM--ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A +IL+ M E +P D+ S+++ + + + E LK + + NL +V
Sbjct: 168 AVEILELMSDENVNYPFDNFVCSSVISGFCNIG---KPELALKFFENAKTLGNLKPNLVT 224
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
++ V + + D L+ EM +E + + I + M+
Sbjct: 225 ---YTAVIGALCKLHRVNQVSD-------LVCEMEKENLAFDVVFYSCWICGYIAEGMLL 274
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLY 576
DA K R M + IRP + L+YG S L ++ +G ++R +SG L +S Y
Sbjct: 275 DAFKRNREMVQKGIRPDTISCTILIYGLSKL---GNVEKAFGVLERMRKSG-LELSSVTY 330
Query: 577 ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++L F + G E + +K M VD+ MY +
Sbjct: 331 TVIMLGFCKKGKLEEAFSLFEMVKGLEMEVDEFMYAT 367
>gi|449461209|ref|XP_004148334.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Cucumis sativus]
Length = 1085
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 115/277 (41%), Gaps = 20/277 (7%)
Query: 340 LLHSNRAMAKLINGYKKHGKN-SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEA 398
+ H NR LI G + ++ + W+L + H S +I LG ++
Sbjct: 108 IFHRNRLWNLLIRGICVNKEDPGKALWVLQDCFRNHAILPSSFTFCVLIHKFCSLGMMDK 167
Query: 399 AHDILDDM--ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A +IL+ M E +P D+ S+++ + + + E LK + + NL +V
Sbjct: 168 AVEILELMSDENVNYPFDNFVCSSVISGFCNIG---KPELALKFFENAKTLGNLKPNLVT 224
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
++ V + + D L+ EM +E + + I + M+
Sbjct: 225 ---YTAVIGALCKLHRVNQVSD-------LVCEMEKENLAFDVVFYSCWICGYIAEGMLL 274
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLY 576
DA K R M + IRP + L+YG S L ++ +G ++R +SG L +S Y
Sbjct: 275 DAFKRNREMVQKGIRPDTISCTILIYGLSKL---GNVEKAFGVLERMRKSG-LELSSVTY 330
Query: 577 ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++L F + G E + +K M VD+ MY +
Sbjct: 331 TVIMLGFCKKGKLEEAFSLFEMVKGLEMEVDEFMYAT 367
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 133/306 (43%), Gaps = 43/306 (14%)
Query: 171 ELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDE 230
E IKPD FN+++ + G +G+ + +M + G+ + ++ + + C E
Sbjct: 261 ENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPN---VVTYCSLMDGYCLVKE 317
Query: 231 LKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQ 290
+ K K + +S + Q Y L+ K +D A L +M ++ +P+ +
Sbjct: 318 VNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEM-HHKHIIPD-VVTY 375
Query: 291 DAQKPYLISIGSPNLRCGLKL-------QIMPELLEKDSILKMEGKQELVLFRNGKLLHS 343
++ L +G + LKL + P+++ SIL K V
Sbjct: 376 NSLIDGLCKLGK--ISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQV---------- 423
Query: 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
++A+A L+ K G I+ +++ + +ID L + G LE AH+I
Sbjct: 424 DKAIA-LLTKLKDQG-----------IRPNMYTY------TILIDGLCKGGRLEDAHNIF 465
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVSERFSE 462
+D+ + G+ + TY ++ + +F EA ALL +M+ SC+ ++ E+++ F +
Sbjct: 466 EDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDK 525
Query: 463 VADKSA 468
+ A
Sbjct: 526 DENDKA 531
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 107/263 (40%), Gaps = 19/263 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L++G+ K GK E + + K+ T CS ++D + + A IL M
Sbjct: 273 LVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCS-LMDGYCLVKEVNKAKSILYTMSQR 331
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D +Y L+ + K+K EA L K+M ++ + VV+ S
Sbjct: 332 GVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPD-----VVTYN---------S 377
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D + K A L+ EM + I +S + CK + A+ + ++++
Sbjct: 378 LIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQG 437
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
IRP + T+ L+ G D ++ D+ + G ++ + Y ++ F G F
Sbjct: 438 IRPNMYTYTILIDGLCKGGRLEDAHNIFEDL---LVKG-YNITVNTYTVMIHGFCNKGLF 493
Query: 590 ERVMEVIGYMKKQNMYVDKLMYK 612
+ + ++ MK + D + Y+
Sbjct: 494 DEALALLSKMKDNSCIPDAVTYE 516
>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12300, mitochondrial; Flags: Precursor
gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 103/253 (40%), Gaps = 33/253 (13%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID L + G L+ A ++ ++ME+ G + TY L+ + + + LL+ M K
Sbjct: 267 SIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK 326
Query: 444 SCLVQNLSCEMVVSERFSE------------------VADKSASFTDTSSLMDKS----- 480
+ N+ V+ + F + +A + ++T SL+D
Sbjct: 327 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYT---SLIDGFCKENH 383
Query: 481 -DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
D A ++ M + I N I +CK I D L+++R+M + T+
Sbjct: 384 LDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNT 443
Query: 540 LVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGY 598
L+ G L L+ + + R + ++ Y+ LL G E+ +E+
Sbjct: 444 LIQGFCELGKLNVAKELFQEMVSRKVPPNIVT-----YKILLDGLCDNGESEKALEIFEK 498
Query: 599 MKKQNMYVDKLMY 611
++K M +D +Y
Sbjct: 499 IEKSKMELDIGIY 511
>gi|414888175|tpg|DAA64189.1| TPA: hypothetical protein ZEAMMB73_647521 [Zea mays]
Length = 667
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 14/171 (8%)
Query: 373 EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
E F + C+ +IDA + + +A + +M G D+ TY +L+ Y V +
Sbjct: 470 EVGGFCDIVSCNILIDAFCKAKKVSSALKLFKEMGYKGIQADAVTYGTLINGLYGVGYYY 529
Query: 433 EAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE 492
AE + +QM K+ +V N++ ++ K+ F + A+ + +M +
Sbjct: 530 LAEEIFEQMLKARVVPNVNLYNIMLHNLC----KAGQF----------EQAQKIFLQMIQ 575
Query: 493 EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ I N+ IY+ K +A+ ++R M I P TF YL+ G
Sbjct: 576 KEVSPDIITFNTLIYWLGKCSRAIEAIDLFRDMTARGIEPDSLTFRYLISG 626
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 23/231 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I ++ G + A I+ M G D TY L Y M +EAE L+++M S
Sbjct: 377 LISGFLRSGSINKAFKIISVMRTNGCEPDVVTYNIRLNHYCNTGMIKEAEKLIEEMEMSG 436
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS---DLAESLIQEMREEAALSTIYKL 502
+V +R+ S+ + K+ D A + + E I
Sbjct: 437 IVN--------PDRY--------SYNQMLKGLCKAHQLDRAFGFVSDHMEVGGFCDIVSC 480
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
N I FCK K + ALK+++ M I+ T+ L+ G + Y L +I
Sbjct: 481 NILIDAFCKAKKVSSALKLFKEMGYKGIQADAVTYGTLINGLYGVGYY----YLAEEIFE 536
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + + +LY +L N + G FE+ ++ M ++ + D + + +
Sbjct: 537 QMLKARVVPNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKEVSPDIITFNT 587
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 17/202 (8%)
Query: 341 LHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAH 400
L +N ++ L+NG+ K G+ E +L + +E S + T S +++ ++G + A
Sbjct: 225 LLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNS-LVNGFCRIGNVNDAL 283
Query: 401 DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSER 459
DI+D M G D TY SL++ K+ F +A +L+QM + C ++ ++S
Sbjct: 284 DIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISAL 343
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
E ++A +DLA L+ + L + N+ I C K A+
Sbjct: 344 CKENEIEAA-----------TDLARILVS----KGLLPDVCTFNTLIQGLCLSKNQDIAM 388
Query: 520 KIYRRMQEMKIRPTVETFYYLV 541
+++ M+ +P T+ L+
Sbjct: 389 EMFEEMKNKGCKPDEFTYSILI 410
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 86/393 (21%), Positives = 145/393 (36%), Gaps = 55/393 (13%)
Query: 171 ELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDE 230
E PD + FN +++ R G+ I++ M + G D ++ L I M C+ E
Sbjct: 257 EGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSL--ISGM-CKLGE 313
Query: 231 LKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQ 290
+K + Q+ Y +L+S K ++I+AA +L
Sbjct: 314 FEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDL------------------ 355
Query: 291 DAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKL 350
L+S G C I L K+ + ME +E+ +N + L
Sbjct: 356 ---ARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEM---KNKGCKPDEFTYSIL 409
Query: 351 INGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDME 407
I+ + E LL KE S G + + + +ID L + +E A +I D ME
Sbjct: 410 IDSLCYERRLKEALMLL----KEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQME 465
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
L G S TY +L+ K K EA L+ QM L + + F V D
Sbjct: 466 LLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGD-- 523
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
++K A ++Q M I+ + I C+ + A K+ R +Q
Sbjct: 524 ---------IEK---AGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQM 571
Query: 528 MKI-------RPTVETFYYLVYGHSSLEMYRDI 553
I P ++ + + ++R++
Sbjct: 572 KGIVLTPHAYNPVIQALFMRKRTKEGMRLFREM 604
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 101/239 (42%), Gaps = 25/239 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI G+ K G E ++ LL K + + S +I LI+ L+ A +L ME
Sbjct: 260 LIAGFGKVGDLVE-AYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKE 318
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSC---------LVQNLS------CE 453
G P D+ TY +L+ K + +A L +M+ K C L+ L
Sbjct: 319 GCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESA 378
Query: 454 MVVSERFSEVADKSASFTDTS--SLMDKS---DLAESLIQEMREEAALSTIYKLNSSIYF 508
V+ E V + FT S +++ K+ D A+ L EMR + + N+ +
Sbjct: 379 CVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNS 438
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESG 567
+G +A KI+ M+E + P V T+ L+ G S + D G +K IE G
Sbjct: 439 LGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDAC---GLLKELIEQG 494
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 15/194 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+N K G+ E L +K + + S +I++L + G EAA +++ +M+
Sbjct: 15 LLNALAKAGQCEEAQLLFEELKAAKWT-PDVVSYSCLINSLGRAGKWEAALEVVAEMQAK 73
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + TY +L+ K F EA LL +MR + V ++ + + S +
Sbjct: 74 GCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEA 133
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
FT L EMRE + + NS IY K A+++ M+
Sbjct: 134 FT--------------LFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHG 179
Query: 530 IRPTVETFYYLVYG 543
P V T+ L+ G
Sbjct: 180 CPPDVMTYSSLITG 193
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 19/196 (9%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ LI G K G+ + L +K+ T + ++DAL + G ++ A ++LD+M+
Sbjct: 188 SSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTA-LMDALGKAGRVDDALELLDEMK 246
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G TY +L+ + KV EA LL +M+++ C+ +V S
Sbjct: 247 ERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRN------GCK-------PDVVTYS 293
Query: 468 ASFTDTSSLMDKSDLAES--LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
T L+ S L E+ ++++M +E N+ I K ++ DA +++ RM
Sbjct: 294 CLIT---GLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRM 350
Query: 526 QEMKIRPTVETFYYLV 541
+ P V T+ L+
Sbjct: 351 KSKGCNPDVVTYSTLI 366
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 22/158 (13%)
Query: 408 LAGHPMDST-TYKSLLTAYYKVKMFREAEALLKQMRK----------SCLVQNLSCEMVV 456
+ G P + TY SLL A K EA+ L ++++ SCL+ +L
Sbjct: 1 MKGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKW 60
Query: 457 SERFSEVADKSA-----------SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
VA+ A + D + D A L+ EMR+ + + N
Sbjct: 61 EAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCL 120
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
I K + +A ++ M+E P T+ L+YG
Sbjct: 121 ISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYG 158
>gi|147772266|emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]
Length = 483
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 84/199 (42%), Gaps = 24/199 (12%)
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-SCEMVVSERFSEVADKSASFTDTSSL 476
+ SL Y ++K R A + QM+ + + SC +S S
Sbjct: 114 FDSLFKTYAQMKKLRNAIDVFCQMKDYGFLPRVESCNAYISASIS--------------- 158
Query: 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
+ + D+A + +EM+ +Y LN + FCK + A++++++M+ M PT+ +
Sbjct: 159 LQRGDIALTFYREMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKKMETMGFSPTITS 218
Query: 537 FYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD--LYETLLLNFLQGGYFERVME 594
+ L+ G Y + +L +K I V D + TL+ F +GG +
Sbjct: 219 YNTLIAG------YCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANK 272
Query: 595 VIGYMKKQNMYVDKLMYKS 613
+ MK ++ + + Y +
Sbjct: 273 IFSEMKANDVVPNTITYNT 291
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 93/239 (38%), Gaps = 35/239 (14%)
Query: 305 LRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELS 364
L G+KL+I L+EK+ + + + V F LING+ + GK E +
Sbjct: 232 LNSGMKLKI---LMEKNGV-----RPDDVTFNT------------LINGFCRGGKLHEAN 271
Query: 365 WLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424
+ S K + + + +I+ Q+G E + D+M G D TY +L+
Sbjct: 272 -KIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILG 330
Query: 425 YYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE 484
++A L+K++ + LV N S FS + + S+ A
Sbjct: 331 LCMEGRTKKAAYLVKELDRENLVPN-------SSTFS-------ALITGQCVRKNSERAF 376
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
L + M + I FCK + A+++ R M E I P +T L G
Sbjct: 377 QLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVREMSERSIAPDSDTLSELCRG 435
>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
Length = 683
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 80/382 (20%), Positives = 145/382 (37%), Gaps = 70/382 (18%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA-------HSIIILAQIHEMN 225
+ P T F + A R G + ++ M++ G V DA H+++ + E
Sbjct: 173 VPPTTFTFGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAA 232
Query: 226 CQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPN 285
DE+ C D F + +L L + A L+
Sbjct: 233 MLLDEMLLMGCAAD---------VNTFNDLVLGL-CGLGRVREAARLV------------ 270
Query: 286 PKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNR 345
++ P +++ G LQ + + D M G+ V N +L++
Sbjct: 271 DRMMTQGCMPSVVTYG-------FLLQGLCRTRQADEACAMLGRLPEV---NVVMLNT-- 318
Query: 346 AMAKLINGYKKHGK---NSELSWLLLS--IKKEHHSFGESTLCSDVIDALIQLGFLEAAH 400
+I G GK +EL ++ S + H++ S ++ L +LG +A
Sbjct: 319 ----VIRGCLTEGKLARATELYEMMGSKGCPPDVHTY------SILMHGLCKLGRFGSAV 368
Query: 401 DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERF 460
+LD+ME G + TY +LL ++ + M+ +A A+L QM +++ F
Sbjct: 369 RMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQM--------------LAKGF 414
Query: 461 SEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALK 520
S + K D A L+QEM+ + I N+ IY C ++ +A
Sbjct: 415 SMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEH 474
Query: 521 IYRRMQEMKIRPTVETFYYLVY 542
I+R + E + T+ L++
Sbjct: 475 IFRNLIEEGVVANGITYNTLIH 496
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 113/287 (39%), Gaps = 33/287 (11%)
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
LL H ++ L VI AL+ G + A +LD+M L G D T+ L+
Sbjct: 199 LLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLC 258
Query: 427 KVKMFREAEALL-KQMRKSC---------LVQNL--------SCEMVVSERFSEVADKSA 468
+ REA L+ + M + C L+Q L +C M+ R EV
Sbjct: 259 GLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAML--GRLPEVNVVML 316
Query: 469 SFTDTSSLMD-KSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ L + K A L + M + ++ + ++ CK G A+++ M+E
Sbjct: 317 NTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEE 376
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
P + T+ L++ M+ D + + + + G +++ Y ++ + G
Sbjct: 377 KGCAPNIVTYSTLLHSFCRNGMWDDARAM---LDQMLAKG-FSMNSQGYNGIIYALCKDG 432
Query: 588 YFERVMEVIGYMKKQNMYVDKLMYKS--------EFLKHHKHLYRRL 626
++ ++ MK Q D Y + + ++ +H++R L
Sbjct: 433 KLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNL 479
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 20/201 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
+I AL++ G + + +M L G +D +Y L+ A K + ALL++M K
Sbjct: 494 LIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKG 553
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
N S M+++E K+ D A L +EM + I N+
Sbjct: 554 IKPNNFSYNMLINELC-----KAGKVRD----------ALELSKEMLNQGLTPDIVTYNT 598
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
I CK AL + ++ + P + T+ L+ H + + D +L + + I
Sbjct: 599 LINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAML---LDKAI 655
Query: 565 ESGVLAVSRDLYETLLLNFLQ 585
G++ R + ++ NF++
Sbjct: 656 SGGIVPNERT-WGMMVQNFVR 675
>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
Length = 374
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 103/239 (43%), Gaps = 29/239 (12%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
+ R LING+ K G+ LL ++ + + + + +ID + G ++ A I
Sbjct: 107 NERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQ-IIFNTMIDGYCRKGMVDDALKI 165
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN---------LSC- 452
ME G +D TY +L +V EA+ LL M + +V N + C
Sbjct: 166 KAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCK 225
Query: 453 --EMVVSER-FSEVADKSASFTDTS------SLMDKSDL--AESLIQEMREEAALSTIYK 501
+MV + R F E+A+K A+ + + K + AE +EM ++ + +Y
Sbjct: 226 DGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYT 285
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDI 553
S ++ C + ALK++ M++ P V + L+ G ++ ++Y D+
Sbjct: 286 YASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDM 344
>gi|297844892|ref|XP_002890327.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336169|gb|EFH66586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 903
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 121/271 (44%), Gaps = 33/271 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDM 406
++N Y + GK + + K+ +S G C+ +I+ +G +E +L M
Sbjct: 231 VVNAYCRCGK---VDKAMAFAKEMDNSLGLELNVVTCNSLINGYAMIGDVEGMTRVLRLM 287
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE---RFSEV 463
G + T+ SL+ +Y K + EAE + + + + LV + V+ + R +
Sbjct: 288 SERGVSRNVVTFTSLIKSYCKKGLMEEAEQVFELVTEKKLVPDQHMHGVLIDGYCRNGRI 347
Query: 464 ADK------------SASFTDTSSLMD---KSDL---AESLIQEMREEAALSTIYKLNSS 505
D + T +SL++ KS AE ++ M + + + N+
Sbjct: 348 CDAVRVHDYMIEMGVRTNTTICNSLINGYCKSGQLVEAEQILTRMNDWSLKPDHHTYNTL 407
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG-DIKRNI 564
+ +C+ + +ALK+ RM + ++ PTV T+ L+ G+S + + D+ LW +KR +
Sbjct: 408 VDGYCRAGHVDEALKLCGRMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGV 467
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEV 595
+ ++ S TLL + G F+ M++
Sbjct: 468 TANEISCS-----TLLEALFKLGDFDEAMKL 493
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 56/291 (19%), Positives = 119/291 (40%), Gaps = 26/291 (8%)
Query: 327 EGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDV 386
E +Q L KL+ LI+GY ++G+ + + + E +T+C+ +
Sbjct: 314 EAEQVFELVTEKKLVPDQHMHGVLIDGYCRNGRICD-AVRVHDYMIEMGVRTNTTICNSL 372
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL 446
I+ + G L A IL M D TY +L+ Y + EA L +M + +
Sbjct: 373 INGYCKSGQLVEAEQILTRMNDWSLKPDHHTYNTLVDGYCRAGHVDEALKLCGRMCQKEV 432
Query: 447 VQNLSCEMVVSERFSEV-------------------ADKSASFTDTSSLMDKSDLAES-- 485
V + ++ + +S + A++ + T +L D E+
Sbjct: 433 VPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVTANEISCSTLLEALFKLGDFDEAMK 492
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
L + + L+ LN I CK + + +A +I + + +P V+T+ L +G+
Sbjct: 493 LWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPDVQTYQALSHGYY 552
Query: 546 SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVI 596
++ ++ +K +E + + ++Y TL+ + + +V +++
Sbjct: 553 NVGNLKEAFA----VKDFMEKKGIFPTIEMYNTLISGAFKYKHLNKVADLV 599
>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 585
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 91/224 (40%), Gaps = 22/224 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID L ++G + A + ++M G D T+ +L+ K M EA+ L+ M
Sbjct: 243 IIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRG 302
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+V +L + E F V D D A+ L M + +
Sbjct: 303 IVPDLFTFTSLIEGFCLVGD--------------LDSAKELFLSMPSKGYEPDVISYTVL 348
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
IY +CK + +A+K+Y M + P ++TF L+ G D L+G +K +
Sbjct: 349 IYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPH-- 406
Query: 566 SGVLAVSRDLY--ETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
AV ++LY L + G ME+ +K NM +D
Sbjct: 407 ----AVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLD 446
>gi|413934769|gb|AFW69320.1| hypothetical protein ZEAMMB73_542469 [Zea mays]
Length = 539
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 16/161 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDM--ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
IDAL + G AA ++ + E G D Y LL + + + +AE L MR
Sbjct: 152 TIDALCKEGHPRAAALLVAQIRREDDGWAPDVRIYNILLNGWSRARRLDKAEKLWAAMR- 210
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
E +F D +M + D A +L+ +MREE + + N
Sbjct: 211 -------------DEGVRPTVVTYGTFIDAHCVMRRPDHAMALLDQMREEGIEANLLTCN 257
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+Y GDA K+ + + P + TF LV+G+
Sbjct: 258 PIVYALAHAGRFGDAHKVLEKFPLYGVAPNISTFNSLVFGY 298
>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 889
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 123/286 (43%), Gaps = 28/286 (9%)
Query: 350 LINGYKKHGKNSE-LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
+IN G+ S+ L+W L I++ + + VI+A + G + A + D ++
Sbjct: 307 VINACCIRGRTSDALAWFNLMIERGCNP--TVVTFNTVINAFCKEGNVVEARKLFDGLKE 364
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVSE--RFSEVAD 465
G ++ Y +L+ Y K++ +A L ++MRK + + ++ ++VS ++ D
Sbjct: 365 MGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREED 424
Query: 466 KSASFTDTS--------SLMDKS----------DLAESLIQEMREEAALSTIYKLNSSIY 507
D S SL D S D A + +M E+ +I NS I
Sbjct: 425 GDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIA 484
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESG 567
+ + + A + Y+ M + P+ T L+ G S ++ T L G + IE G
Sbjct: 485 AYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQM---IEKG 541
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
L+V+ + LL F + G + G M+++ ++ D + + +
Sbjct: 542 -LSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSA 586
>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Cucumis sativus]
Length = 606
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 100/231 (43%), Gaps = 20/231 (8%)
Query: 379 ESTLCS--DVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEA 436
E +CS V+D L + G + A ++D++ G TY +LL Y ++K
Sbjct: 189 EIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNE 248
Query: 437 LLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAAL 496
+L M K+ + N++ ++ E +S + K + AE L EM ++
Sbjct: 249 ILSLMEKNVVDYNVTTYTMLIEWYSRSS--------------KIEEAEKLFDEMLKKGIE 294
Query: 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
+Y S I + CK + A ++ M E ++ P T+ L+ G + ++
Sbjct: 295 PDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMM 354
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
D ++S + V+R ++ TL+ + + G + + + M+++ +D
Sbjct: 355 VND----MQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEID 401
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 124/302 (41%), Gaps = 46/302 (15%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+IN K G N + +++L E + +I+ + G ++AA +++DM+
Sbjct: 303 IINWNCKFG-NMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSK 361
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVS-----ERFSE- 462
G ++ + +L+ Y K M EA L M+ K + +C ++ S R E
Sbjct: 362 GVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEA 421
Query: 463 -----------VADKSASFTDTSSLMD----KSDLAES--LIQEMREEAALSTIYKLNSS 505
VA SF S L+D + + AE+ L + M ++ ++ N+
Sbjct: 422 KRLLLTMEERGVAPNVVSF---SILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAF 478
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH-------SSLEMYRDITILWG 558
I +CK + +A K+ MQE + P T+ L+ G +LE++ ++ L
Sbjct: 479 IERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQL-- 536
Query: 559 DIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKH 618
+ RN+ + Y ++ + G + ++ M K+ + D +Y S
Sbjct: 537 GLNRNVVT---------YTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASL 587
Query: 619 HK 620
HK
Sbjct: 588 HK 589
>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 915
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 116/286 (40%), Gaps = 27/286 (9%)
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
K++NGY K G N E + +S+ E + + +I Q L++A + +M L
Sbjct: 223 KMVNGYCKVG-NVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPL 281
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV------SERFSE 462
G + Y L+ + EA L +M+ + V+ SER SE
Sbjct: 282 KGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSE 341
Query: 463 VADKSASFTDT---------SSLMD------KSDLAESLIQEMREEAALSTIYKLNSSIY 507
+ + + L+D K + A L+ +M E+ + + N+ I
Sbjct: 342 ALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALIN 401
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESG 567
+CK MI DAL + M+ +RP T+ L+ G+ +++ + +L ++R +
Sbjct: 402 GYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLERKVLPD 461
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
V+ Y +L+ + G F+ ++ M + + D Y S
Sbjct: 462 VVT-----YNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTS 502
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 22/219 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G + G N + ++ LLS+ + + + +ID+L + +E A D+ D +E
Sbjct: 468 LIDGQCRSG-NFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQK 526
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVV------------ 456
+ Y +L+ Y K EA +L++M K+CL +L+ ++
Sbjct: 527 DVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEA 586
Query: 457 ---SERFSEVADKSASFTDT---SSLMDKSDL--AESLIQEMREEAALSTIYKLNSSIYF 508
E+ ++ + TDT L+ D A Q+M + + I
Sbjct: 587 TLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQT 646
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL 547
+C+ + DA + +M+E + P + T+ L+ G+ L
Sbjct: 647 YCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDL 685
>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
Length = 653
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 105/243 (43%), Gaps = 22/243 (9%)
Query: 373 EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
+H + + + V+D + + G LE AH+ILD M G + Y ++L + +
Sbjct: 288 DHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWE 347
Query: 433 EAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491
+AE LL +M C + +++ ++V F + L+ + L+++M
Sbjct: 348 QAEELLAEMFDNDCPLDDVTFNILV------------DFFCQNGLVYR---VIELLEQML 392
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYR 551
E + + + I FCK +I +A+ + + M RP ++ ++ G S E +
Sbjct: 393 EHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWV 452
Query: 552 DITILWGDIKRNIESGVLAVSRDLYETLLLNFL-QGGYFERVMEVIGYMKKQNMYVDKLM 610
D L + + IE G + ++NFL + G E+ +E++ M D +
Sbjct: 453 DAEDL---MSQMIEQG--CSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLIS 507
Query: 611 YKS 613
Y +
Sbjct: 508 YST 510
>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 907
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 114/274 (41%), Gaps = 27/274 (9%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGEST---LCSDVIDALIQLGFLEAA 399
S A++ L+ G +K GK E L++ K FG S + + +ID+L + + A
Sbjct: 331 SEAAVSSLVEGLRKRGKVEEA----LNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEA 386
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
+ D M G + TY L+ + + A + L +M L ++
Sbjct: 387 ELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVY-------P 439
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
++ + + F D S+ AESL+ EM + T+ S + +C I AL
Sbjct: 440 YNSLINGHCKFGDISA-------AESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKAL 492
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYET 578
++Y M I P++ TF L+ G + RD L+ ++ N++ +R Y
Sbjct: 493 RLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKP-----NRVTYNV 547
Query: 579 LLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
++ + + G + E + M ++ + D Y+
Sbjct: 548 MIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYR 581
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 98/223 (43%), Gaps = 15/223 (6%)
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
L R+ + LI+ K G E ++ L K+ ++ + VID + G + A
Sbjct: 441 FLPDTRSYSILIHSLVKAGFARE-TYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKA 499
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
+ +L++M+ GH TY S++ K+ EA L ++ + + + N +++ S
Sbjct: 500 YQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELN---QVIYS-- 554
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
S D + + D A +++EM ++ +Y N + K + I +AL
Sbjct: 555 ---------SLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEAL 605
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
++ M+++K P T+ L+ G + + + W ++++
Sbjct: 606 VCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQK 648
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 87/205 (42%), Gaps = 25/205 (12%)
Query: 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
RA +I+G+ K GK ++ LL +K H T S V+D L ++ L+ A+ +
Sbjct: 480 TRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGS-VVDGLAKIDRLDEAYMLF 538
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL---SCEMVVSERF 460
++ + G ++ Y SL+ + KV EA ++++M + L N+ +C +
Sbjct: 539 EEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLL------ 592
Query: 461 SEVADKSASFTDTSSLMDKSDLAESLI--QEMREEAALSTIYKLNSSIYFFCKGKMIGDA 518
L+ ++ E+L+ Q M++ I CK + A
Sbjct: 593 -------------DGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKA 639
Query: 519 LKIYRRMQEMKIRPTVETFYYLVYG 543
++ MQ+ ++P T+ ++ G
Sbjct: 640 FVFWQEMQKQGLKPNTITYTAMISG 664
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 107/248 (43%), Gaps = 30/248 (12%)
Query: 380 STLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK 439
+T CS +ID L + G ++ A+ I + M A + Y SL+ ++K + + K
Sbjct: 341 ATFCS-LIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYK 399
Query: 440 QM-RKSC------LVQNLSCEMVVSER------FSEVADKSASF---TDTSSLMDKSDLA 483
+M R C L + C E F E+ K+ F T + S++ S +
Sbjct: 400 EMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEI--KARGFLPDTRSYSILIHSLVK 457
Query: 484 ESLIQE-------MREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
+E M+++ + N+ I FCK + A ++ M+ M PTV T
Sbjct: 458 AGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVT 517
Query: 537 FYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVI 596
+ +V G + ++ + +L+ + K N + +++ +Y +L+ F + G + V+
Sbjct: 518 YGSVVDGLAKIDRLDEAYMLFEEAKSN----GIELNQVIYSSLIDGFGKVGRVDEAYLVM 573
Query: 597 GYMKKQNM 604
M ++ +
Sbjct: 574 EEMMQKGL 581
>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 642
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 94/463 (20%), Positives = 181/463 (39%), Gaps = 55/463 (11%)
Query: 174 KPDTMIFNLVLHACVRFGSSLKGQHI-MELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
KP + +N V+ ++ G K + E+ ++ D + L +E + D
Sbjct: 194 KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAI 253
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNR---------YREPL 283
+ D++ ++ Y +LL ++FK ++ A +L +M R Y E +
Sbjct: 254 RL---FDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310
Query: 284 PNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGK-----------QEL 332
++ Y + + L + P+++ ++++ + GK E+
Sbjct: 311 KGLGKAGRVEEAYDL------YKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEM 364
Query: 333 VLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ 392
+R + S + K + ++ SE+S +K + S E T S +ID +
Sbjct: 365 GTWRCTPTVVSYNTVIKAL--FESKAPVSEVSSWFDKMKADGVSPSEFTY-SILIDGYCK 421
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
+E A +L++M+ G P Y SL+ A K K + A L K+++ +N
Sbjct: 422 TNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELK-----ENFGN 476
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
VS R V K F L + D L EM+ + + +Y N+ + K
Sbjct: 477 ---VSSRVYAVMIK--HFGKCGKLSEAVD----LFNEMKNQGSGPDVYAYNALMSGMVKA 527
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVS 572
M+ +A + R+M+E + + ++ G + + R ++ +K +
Sbjct: 528 GMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKH------CGIK 581
Query: 573 RD--LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
D Y TLL F G FE ++ MK + D + Y S
Sbjct: 582 PDGVTYNTLLGCFAHAGMFEEAARLMREMKDKGFEYDAITYSS 624
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 125/280 (44%), Gaps = 34/280 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMEL 408
++NG K G +++L+++LL+ K E L + +ID L + ++ A ++ +ME
Sbjct: 227 VVNGLCKRG-DTDLAFILLN-KMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMET 284
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM--RK--------SCLVQNLSCE--MVV 456
G + TY SL++ + +A LL M RK S L+ E +V
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344
Query: 457 SER-FSEVADKS--ASFTDTSSLM------DKSDLAESLIQEMREEAALSTIYKLNSSIY 507
+E+ + E+ +S S SSL+ D+ D A+ + + M + + ++ I
Sbjct: 345 AEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIK 404
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEMYRDITILWGDIKRNI 564
FCK K + + ++++R M + + T+ L+ G +M ++I K +
Sbjct: 405 GFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEI------FKEMV 458
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
GV + Y TLL + G E+ M V Y+++ M
Sbjct: 459 SDGV-PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 80/201 (39%), Gaps = 20/201 (9%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D +Y +L+ + K K E L ++M + LV N + + + D
Sbjct: 395 DVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGD-------- 446
Query: 474 SSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT 533
D+A+ + +EM + I N+ + CK + A+ ++ +Q K+ PT
Sbjct: 447 ------CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 500
Query: 534 VETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
+ T+ ++ G D L+ ++ + ++ V+A Y T++ F + G E
Sbjct: 501 IYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVA-----YNTMISGFCRKGSKEEA 555
Query: 593 MEVIGYMKKQNMYVDKLMYKS 613
+ MK+ + Y +
Sbjct: 556 DALFKEMKEDGTLPNSGCYNT 576
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 15/178 (8%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+ A ++D M + G+ ++ T+ +L+ + EA AL+ +M +L V
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGV 226
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
V + D +DLA L+ +M + + + I CK K +
Sbjct: 227 VVNGLCKRGD--------------TDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHM 272
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVS 572
DAL +++ M+ IRP V T+ L+ + + D + L D I+R I V S
Sbjct: 273 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 330
>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61990, mitochondrial; Flags: Precursor
gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 974
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 136/328 (41%), Gaps = 61/328 (18%)
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
L+ +A A LI GY + + LL+ +KK + T + V+ + G L+ A
Sbjct: 378 LIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGT-VVKGMCSSGDLDGA 436
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC--EMVVS 457
++I+ +M +G + Y +L+ + + F +A +LK+M++ + ++ C +++
Sbjct: 437 YNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIG 496
Query: 458 ERFSEVADKSASF-----------------TDTSSLMDKSDLA--ESLIQEMREEAALST 498
++ D++ SF S ++ S+ A + ++EMRE L
Sbjct: 497 LSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPN 556
Query: 499 IYKLNSSIYFFC-KGKMI----------------------------------GDALKIYR 523
I +C KGK+I DA +I+R
Sbjct: 557 KVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFR 616
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNF 583
M+ I P V ++ L+ G S L + + ++ ++ +E G L + +Y LL F
Sbjct: 617 EMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM---VEEG-LTPNVIIYNMLLGGF 672
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ G E+ E++ M + ++ + + Y
Sbjct: 673 CRSGEIEKAKELLDEMSVKGLHPNAVTY 700
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 15/202 (7%)
Query: 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
N + LI+G K G+N++ + L+ H + + I + + G +E A +
Sbjct: 312 NHTYSLLIDGLLK-GRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALF 370
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
D M +G + Y SL+ Y + K R+ LL +M+K +V + + V
Sbjct: 371 DGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIV-------ISPYTYGTV 423
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
S D D A ++++EM + + I F + GDA+++ +
Sbjct: 424 VKGMCSSGDL-------DGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLK 476
Query: 524 RMQEMKIRPTVETFYYLVYGHS 545
M+E I P + + L+ G S
Sbjct: 477 EMKEQGIAPDIFCYNSLIIGLS 498
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 18/228 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID L ++ LE A +L +M+ G +D+ TY L+ K + A+ L+ +M
Sbjct: 283 LIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM---- 338
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ ++ + + + V K +L D +A LI + + A+L
Sbjct: 339 VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGM-IASGLIPQAQAYASL--------- 388
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I +C+ K + ++ M++ I + T+ +V G S D+ + +K I
Sbjct: 389 IEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCS---SGDLDGAYNIVKEMIA 445
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
SG + +Y TL+ FLQ F M V+ MK+Q + D Y S
Sbjct: 446 SGCRP-NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 108/261 (41%), Gaps = 22/261 (8%)
Query: 350 LINGYKKHGKNSELSWLL--LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
L+ G+ + G+ + LL +S+K H + T C+ +ID + G L A + D+M+
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPN--AVTYCT-IIDGYCKSGDLAEAFRLFDEMK 724
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
L G DS Y +L+ ++ A + +K C +++ F
Sbjct: 725 LKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVF------- 777
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
F T K+++ L+ + N I + CK + A +++ +MQ
Sbjct: 778 -KFGKTEL---KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN 833
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQG 586
+ PTV T+ L+ G+ + ++ ++ + I IE + +Y ++ FL+
Sbjct: 834 ANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHI-----MYSVIINAFLKE 888
Query: 587 GYFERVMEVIGYMKKQNMYVD 607
G + + ++ M +N D
Sbjct: 889 GMTTKALVLVDQMFAKNAVDD 909
Score = 38.9 bits (89), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 14/164 (8%)
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
LC+ +I+ + G + A M G D+ TY L+ +K +AE + ++
Sbjct: 558 VLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
MR + ++ V+ FS++ + M K A S+ EM EE +
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGN-----------MQK---ASSIFDEMVEEGLTPNVI 663
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
N + FC+ I A ++ M + P T+ ++ G+
Sbjct: 664 IYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGY 707
>gi|410110135|gb|AFV61147.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rotundifolia]
Length = 440
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 124/268 (46%), Gaps = 23/268 (8%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 20 STLITHFGKEGLFDAALSWL--QKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 77
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ +G D Y +++ + K K+FREA +L+ +M+ + ++ N + + + E
Sbjct: 78 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE---- 133
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ F + A S+ EMRE L + N I + + M +A K++ M+
Sbjct: 134 NKKFLE----------ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 183
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQ 585
+M I P V ++ L+ + E++ + L+ ++R NIE V+ Y ++++ + +
Sbjct: 184 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YNSMMMIYGK 238
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ +I M+ + + + + Y +
Sbjct: 239 TLEHEKANNLIQEMQSRGIEPNSITYST 266
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 110/265 (41%), Gaps = 36/265 (13%)
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
H + D+M D TY +L+T + K +F A + L++M + + ++V+
Sbjct: 1 HGLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQD----QVPGDLVLYSN 56
Query: 460 FSEVADKSASFTDTSSLMDK-------SDL------------------AESLIQEMREEA 494
E++ K ++ S+ + DL A SLI EM+
Sbjct: 57 LIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAG 116
Query: 495 ALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI- 553
+ ++ + + + K +AL ++ M+E+K + T ++ + L M ++
Sbjct: 117 VMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEAD 176
Query: 554 TILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ WG K IE V++ Y TLL + F + + M+++N+ + + Y S
Sbjct: 177 KLFWGMRKMGIEPNVVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNS 231
Query: 614 EFLKHHKHLYRRLKVSNARTEAQSK 638
+ + K L K +N E QS+
Sbjct: 232 MMMIYGKTLEHE-KANNLIQEMQSR 255
>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
[Arabidopsis thaliana]
Length = 602
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 104/262 (39%), Gaps = 19/262 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++NG + G S L++ +L +E + + S +ID+L + G ++AA + +ME
Sbjct: 199 IVNGICRSGDTS-LAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETK 257
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G TY SL+ K + + LLK M +V N+ V+ + F +
Sbjct: 258 GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG----- 312
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
K A L +EM I N+ + +C + +A + M K
Sbjct: 313 ---------KLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
P + TF L+ G+ ++ D ++ RNI L + Y L+ F Q G
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVF----RNISKRGLVANAVTYSILVQGFCQSGKI 419
Query: 590 ERVMEVIGYMKKQNMYVDKLMY 611
+ E+ M + D + Y
Sbjct: 420 KLAEELFQEMVSHGVLPDVMTY 441
>gi|410110141|gb|AFV61150.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
turbinata]
Length = 441
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 124/268 (46%), Gaps = 23/268 (8%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 20 STLITHFGKEGLFDAALSWL--QKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 77
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ +G D Y +++ + K K+FREA +L+ +M+ + ++ N + + + E
Sbjct: 78 KXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE---- 133
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ F + A S+ EMRE L + N I + + M +A K++ M+
Sbjct: 134 NKKFLE----------ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 183
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQ 585
+M I P V ++ L+ + E++ + L+ ++R NIE V+ Y ++++ + +
Sbjct: 184 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YNSMMMIYGK 238
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ +I M+ + + + + Y +
Sbjct: 239 TLEHEKANNLIQEMQSRGVEPNSITYST 266
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 110/261 (42%), Gaps = 28/261 (10%)
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
H + D+M D TY +L+T + K +F A + L++M + + +L + E
Sbjct: 1 HGLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIEL 60
Query: 460 FSEVADKSASFTDTSSL------------------MDKSDL---AESLIQEMREEAALST 498
++ D S + + S L K+ L A SLI EM+ +
Sbjct: 61 SRKLCDYSKAISIFSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPN 120
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILW 557
++ + + + K +AL ++ M+E+K + T ++ + L M ++ + W
Sbjct: 121 TTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 180
Query: 558 GDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLK 617
G K IE V++ Y TLL + F + + M+++N+ + + Y S +
Sbjct: 181 GMRKMGIEPNVVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMI 235
Query: 618 HHKHLYRRLKVSNARTEAQSK 638
+ K L K +N E QS+
Sbjct: 236 YGKTLEHE-KANNLIQEMQSR 255
>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
Length = 735
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 103/262 (39%), Gaps = 19/262 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++NG + G S L+ LL +E + + S +ID+L + G ++AA + +ME
Sbjct: 199 IVNGICRSGDTS-LALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETK 257
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G TY SL+ K + + LLK M +V N+ V+ + F +
Sbjct: 258 GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG----- 312
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
K A L +EM I N+ + +C + +A + M K
Sbjct: 313 ---------KLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
P + TF L+ G+ ++ D ++ RNI L + Y L+ F Q G
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVF----RNISKRGLVANAVTYSILVQGFCQSGKI 419
Query: 590 ERVMEVIGYMKKQNMYVDKLMY 611
+ E+ M + D + Y
Sbjct: 420 KLAEELFQEMVSHGVLPDVMTY 441
>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 136/328 (41%), Gaps = 61/328 (18%)
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
L+ +A A LI GY + + LL+ +KK + T + V+ + G L+ A
Sbjct: 378 LIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGT-VVKGMCSSGDLDGA 436
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC--EMVVS 457
++I+ +M +G + Y +L+ + + F +A +LK+M++ + ++ C +++
Sbjct: 437 YNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIG 496
Query: 458 ERFSEVADKSASF-----------------TDTSSLMDKSDLA--ESLIQEMREEAALST 498
++ D++ SF S ++ S+ A + ++EMRE L
Sbjct: 497 LSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPN 556
Query: 499 IYKLNSSIYFFC-KGKMI----------------------------------GDALKIYR 523
I +C KGK+I DA +I+R
Sbjct: 557 KVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFR 616
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNF 583
M+ I P V ++ L+ G S L + + ++ ++ +E G L + +Y LL F
Sbjct: 617 EMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM---VEEG-LTPNVIIYNMLLGGF 672
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ G E+ E++ M + ++ + + Y
Sbjct: 673 CRSGEIEKAKELLDEMSVKGLHPNAVTY 700
Score = 45.8 bits (107), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 14/152 (9%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G +E A + D M +G + Y SL+ Y + K R+ LL +M+K +V
Sbjct: 361 GVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIV------ 414
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
+ + V S D D A ++++EM + + I F +
Sbjct: 415 -ISPYTYGTVVKGMCSSGDL-------DGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNS 466
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
GDA+++ + M+E I P + + L+ G S
Sbjct: 467 RFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLS 498
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 18/228 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID L ++ LE A +L +M+ G +D+ TY L+ K + A+ L+ +M
Sbjct: 283 LIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM---- 338
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ ++ + + + V K +L D +A LI + + A+L
Sbjct: 339 VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGM-IASGLIPQAQAYASL--------- 388
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I +C+ K + ++ M++ I + T+ +V G S D+ + +K I
Sbjct: 389 IEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCS---SGDLDGAYNIVKEMIA 445
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
SG + +Y TL+ FLQ F M V+ MK+Q + D Y S
Sbjct: 446 SGCRP-NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 108/261 (41%), Gaps = 22/261 (8%)
Query: 350 LINGYKKHGKNSELSWLL--LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
L+ G+ + G+ + LL +S+K H + T C+ +ID + G L A + D+M+
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPN--AVTYCT-IIDGYCKSGDLAEAFRLFDEMK 724
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
L G DS Y +L+ ++ A + +K C +++ F
Sbjct: 725 LKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVF------- 777
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
F T K+++ L+ + N I + CK + A +++ +MQ
Sbjct: 778 -KFGKTEL---KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN 833
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQG 586
+ PTV T+ L+ G+ + ++ ++ + I IE + +Y ++ FL+
Sbjct: 834 ANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHI-----MYSVIINAFLKE 888
Query: 587 GYFERVMEVIGYMKKQNMYVD 607
G + + ++ M +N D
Sbjct: 889 GMTTKALVLVDQMFAKNAVDD 909
Score = 38.9 bits (89), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 14/164 (8%)
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
LC+ +I+ + G + A M G D+ TY L+ +K +AE + ++
Sbjct: 558 VLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
MR + ++ V+ FS++ + M K A S+ EM EE +
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGN-----------MQK---ASSIFDEMVEEGLTPNVI 663
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
N + FC+ I A ++ M + P T+ ++ G+
Sbjct: 664 IYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGY 707
>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
Length = 716
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 106/264 (40%), Gaps = 50/264 (18%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDV-IDALIQLGFLEAAHDILDDMEL 408
LINGY K G E WL +K+ S L ++ +D +LG LE A +M
Sbjct: 378 LINGYCKAGNLKEALWLFGDLKRA--GLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVE 435
Query: 409 AGHPMDSTTYKSLLTAYYKVK---MFRE--AEALLKQMRKSCLVQN--LSCEMVVSERFS 461
G D +TY L+ KV+ M RE E L K ++ C N +S E++
Sbjct: 436 QGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELI------ 489
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
+ S +F T ++ + ++++ N + CK + DA +
Sbjct: 490 -LGSTSEAFQLTEVMISRGISSDTVT--------------YNIFLDGLCKSGNLKDAYVL 534
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLL 581
+ +M ++P T+ L++ H E G L +RD+++ +L+
Sbjct: 535 WMKMVSDGLQPDCITYTCLIHAH-------------------CERGRLREARDIFDGMLV 575
Query: 582 NFLQGGYFERVMEVIGYMKKQNMY 605
+ L + + Y ++ N+Y
Sbjct: 576 SGLPPSAVTYTVFIHAYCRRGNLY 599
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 114/286 (39%), Gaps = 29/286 (10%)
Query: 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTL---CSDVIDALIQLGFLEAAHDILDDME 407
N ++ S S L L+ +E G C+ V+ AL + + +M
Sbjct: 164 FNTRARNPAPSTCSTLCLAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEML 223
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK---SCLVQNLSCEMVVS------- 457
G TY +LL ++++ +A LL++M CL +++ +V++
Sbjct: 224 QLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGE 283
Query: 458 -ERFSEVAD------KSASFTDTSSLMD-----KSDLAESLIQEMREEAALSTIYKLNSS 505
E+ +++ D K+++FT + + A +L EM E + T+ N+
Sbjct: 284 LEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTI 343
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I+ + + A + M+ M + P + T+ L+ G+ ++ L+GD+KR
Sbjct: 344 IHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKR--- 400
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
LA S Y LL + + G E M +Q D Y
Sbjct: 401 -AGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTY 445
>gi|3107905|dbj|BAA25906.1| leaf protein [Ipomoea nil]
Length = 665
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/214 (18%), Positives = 89/214 (41%), Gaps = 21/214 (9%)
Query: 335 FRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGEST---LCSDVIDALI 391
+N K+ + R +++GY K G ++ L + FG + + ++ +
Sbjct: 270 MQNNKVAPNVRTCGIVVDGYSKEGNMADA----LKFIYKMQGFGVHPNLFIFNSLLKGFL 325
Query: 392 QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
+ + + L M+ G D TY +++ A+ + + E + + M KS + +
Sbjct: 326 DITDTKGVDETLTLMQEFGVKPDVVTYSTIMNAWSSAGLMEKCEEMFQDMIKSGIEPDNH 385
Query: 452 CEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK 511
++++ + + AE+L++ M A + + I +C
Sbjct: 386 AFSILAKGYVRAGEPKK--------------AEALLEAMATHGAHPNVVMFTTIISGWCS 431
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
+ DAL++Y RM M ++P + TF L++G+
Sbjct: 432 AAKMEDALRVYDRMCRMDVQPNLNTFETLIWGYG 465
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 55/268 (20%), Positives = 112/268 (41%), Gaps = 26/268 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI G+ GK E S LL + +E + + + ++ A +E A ++ M A
Sbjct: 179 LIKGFGIIGKPEESSKLLEIMSREENIKPDDRTYNILVQAWCNKNNIEKAWGVVHRMVGA 238
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-SCEMVVSERFSEVADKSA 468
G D TY ++ AY + K A L+ QM+ + + N+ +C +VV
Sbjct: 239 GLKPDVVTYNTIARAYARGKETSRAAELISQMQNNKVAPNVRTCGIVVD----------- 287
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFF---CKGKMIGDALKIYRRM 525
++ ++ D A I +M+ ++ NS + F K + + L + M
Sbjct: 288 GYSKEGNMAD----ALKFIYKMQGFGVHPNLFIFNSLLKGFLDITDTKGVDETLTL---M 340
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ 585
QE ++P V T+ ++ SS + ++ D+ I+SG+ + L +++
Sbjct: 341 QEFGVKPDVVTYSTIMNAWSSAGLMEKCEEMFQDM---IKSGI-EPDNHAFSILAKGYVR 396
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G ++ ++ M + + +M+ +
Sbjct: 397 AGEPKKAEALLEAMATHGAHPNVVMFTT 424
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 107/267 (40%), Gaps = 50/267 (18%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ ++ LI+ G + H I + GH TY ++L A K F+ LLK++ +
Sbjct: 72 TKLMKTLIERGKPQEVHSITKGLTEEGHRPTLVTYTTVLAALTLQKRFKSIPLLLKKVEQ 131
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ L + S F+ + + +F ++ ++ + A + ++MRE+ T N
Sbjct: 132 NGLRPD-------SIFFNPMIN---AFCESGNVKE----AMKIFRKMREKGCKPTASTFN 177
Query: 504 SSIYFFCKGKMIGDA------LKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ I F +IG L+I R E I+P T+ LV + +I W
Sbjct: 178 ALIKGF---GIIGKPEESSKLLEIMSR--EENIKPDDRTYNILVQAWCN---KNNIEKAW 229
Query: 558 GDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVI--------------------G 597
G + R + +G L Y T+ + +G R E+I G
Sbjct: 230 GVVHRMVGAG-LKPDVVTYNTIARAYARGKETSRAAELISQMQNNKVAPNVRTCGIVVDG 288
Query: 598 YMKKQNMY-VDKLMYKSEFLKHHKHLY 623
Y K+ NM K +YK + H +L+
Sbjct: 289 YSKEGNMADALKFIYKMQGFGVHPNLF 315
>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
Length = 700
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 25/251 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LING K ++ L++ ++K T + +IDA G LE +L DM+
Sbjct: 410 LINGLCKLEMVTKAEDLVMEMEKSGVDPSVETF-NTLIDAYGTAGQLEKCFTVLSDMQQK 468
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D ++ S++ A+ K EA A+L M + N + + + E D +
Sbjct: 469 GIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQA 528
Query: 470 F--------------TDTSSLMDKS-------DLAESLIQEMREEAALSTIYKLNSSIYF 508
F T +L+ K D AE LI +R + + N+ I
Sbjct: 529 FLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISA 588
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIE-- 565
C AL++ + M + IRPT+ T++ LV +S D+ L+ + +N+E
Sbjct: 589 CCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPS 648
Query: 566 SGVLAVSRDLY 576
S + + D Y
Sbjct: 649 SSIYGIMVDAY 659
Score = 42.0 bits (97), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 49/259 (18%), Positives = 100/259 (38%), Gaps = 28/259 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID ++ G LEA + D M G + TY LL+ + E L+ +M
Sbjct: 235 MIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHS 294
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL---------------------AE 484
+ + ++ + + + + + + K + AE
Sbjct: 295 MFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAE 354
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+++ + + T N+ I +C+ + + A I+ +M+ IRP T+ L+ G
Sbjct: 355 QVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGL 414
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
LEM D+ +E + S + + TL+ + G E+ V+ M+++ +
Sbjct: 415 CKLEMVTKAE----DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGI 470
Query: 605 YVDKLMYKS---EFLKHHK 620
D + + S F K+ K
Sbjct: 471 KSDVISFGSVVKAFCKNGK 489
>gi|410110113|gb|AFV61136.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
filifolia]
Length = 439
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 124/268 (46%), Gaps = 23/268 (8%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 19 STLITHFGKEGLFDAALSWL--QKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 76
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ +G D Y +++ + K K+FREA +L+ +M+ + ++ N + + + E
Sbjct: 77 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE---- 132
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ F + A S+ EMRE L + N I + + M +A K++ M+
Sbjct: 133 NKKFLE----------ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 182
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQ 585
+M I P V ++ L+ + E++ + L+ ++R NIE V+ Y ++++ + +
Sbjct: 183 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YNSMMMIYGK 237
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ +I M+ + + + + Y +
Sbjct: 238 TLEHEKANNLIQEMQSRGIEPNSITYST 265
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 109/259 (42%), Gaps = 28/259 (10%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
+ D+M D TY +L+T + K +F A + L++M + + +L + E
Sbjct: 2 LFDEMRRRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 61
Query: 462 EVADKSASFTDTSSL------------------MDKSDL---AESLIQEMREEAALSTIY 500
++ D S + + S L K+ L A SLI EM+ +
Sbjct: 62 KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGD 559
++ + + + K +AL ++ M+E+K + T ++ + L M ++ + WG
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181
Query: 560 IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHH 619
K IE V++ Y TLL + F + + M+++N+ + + Y S + +
Sbjct: 182 RKMGIEPNVVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 236
Query: 620 KHLYRRLKVSNARTEAQSK 638
K L K +N E QS+
Sbjct: 237 KTLEHE-KANNLIQEMQSR 254
>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 18/222 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
V++ L + G +E + ++ + G ++ TY +++ AY K + F E +LK M+K
Sbjct: 211 VVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDG 270
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+V N V E++ K+ D L D EMRE S I+ S
Sbjct: 271 VVYN----KVTYTLLIELSVKNGKMNDVEKLFD----------EMRERGIESDIHVYTSL 316
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I + C+ I A ++ + E + P+ T+ L+ G + IL + ++
Sbjct: 317 ISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNE----MQ 372
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
S + +++ ++ TL+ + + G + + M+K+ D
Sbjct: 373 SKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQAD 414
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 34/190 (17%), Positives = 80/190 (42%), Gaps = 22/190 (11%)
Query: 375 HSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREA 434
H++G +ID + ++G + AA ++++M+ G + + +L+ Y + M EA
Sbjct: 346 HTYGA------LIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEA 399
Query: 435 EALLKQMRKSCLVQNL-SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE 493
+ M K ++ +C + S + + + D A+ + M E
Sbjct: 400 SMIYDVMEKKGFQADVFTCNTIAS---------------CFNRLKRYDEAKQWLFRMMEG 444
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI 553
+ + I +CK + +A +++ M +++P T+ ++Y + ++
Sbjct: 445 GVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEA 504
Query: 554 TILWGDIKRN 563
LW ++K N
Sbjct: 505 RKLWANMKAN 514
>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 673
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 116/291 (39%), Gaps = 37/291 (12%)
Query: 332 LVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-------- 383
L F G++ RA L+ GY K G S+K H E + C
Sbjct: 292 LEFFLAGEIKPRTRAYNALLKGYVKIG----------SLKNAEHVLDEMSECGVAPDEAT 341
Query: 384 -SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
S ++DA + G E+A +L +ME G S + +L + +++A A+L++M
Sbjct: 342 YSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMH 401
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
S + + V+ + F + + MD + MR E +
Sbjct: 402 ASGVQPDRHFYNVMIDTFGK-------YNCLGHAMD-------VFNRMRGEGIEPDVVTW 447
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
N+ I CKG A+++++ M+E P T+ ++ E + + + ++K
Sbjct: 448 NTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMK- 506
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E G L + Y TL+ + + G ++ ++ I MK + MY +
Sbjct: 507 --EQG-LVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHA 554
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 91/203 (44%), Gaps = 24/203 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+IDA + G + A ++ +M + P +TTY ++ + + + E ++ +M++
Sbjct: 450 LIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQG 509
Query: 446 LVQNLSCEMVV------SERFSEVAD-----KSASFTDTSSLMDK----------SDLAE 484
LV N+ + S R+ E D K+ + ++ +D A
Sbjct: 510 LVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHAL 569
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
++++ MR + ++ LNS I F + + + +A + + M+E RP V T+ L+
Sbjct: 570 NVVKAMRADGLEASTVVLNSLINAFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKAL 629
Query: 545 SSLEMYRDITILWGDIKRNIESG 567
+E + + +++ ++ I SG
Sbjct: 630 IRVEQFDKVPVIYEEM---ITSG 649
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 127/294 (43%), Gaps = 31/294 (10%)
Query: 309 LKLQIMPELLEKDSILK---MEGKQELVLFRNGKLLHSNR-----AMAKLINGYKKHGKN 360
KL I P+++ +++ EGK ++ + +++ S + LING G N
Sbjct: 155 FKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSG-N 213
Query: 361 SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS 420
+ ++ + +++ + +ID+L + + A D L +M G P D+ TY S
Sbjct: 214 TNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNS 273
Query: 421 LLTAYYKVKMFREAEALLKQMRKS-----CLVQNLSCEMVVSERF--------SEVADKS 467
++ + EA L K+M ++ + N+ + + +R SE+ D+
Sbjct: 274 IVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQG 333
Query: 468 AS---FTDTSSL-----MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
T T+ L + + + A L ++M ++ + N+ I CK +++ DA+
Sbjct: 334 IPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAM 393
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVS 572
+ M + I P T+ +++G +L + T L+ + + RN+ L S
Sbjct: 394 EFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFS 447
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 105/249 (42%), Gaps = 25/249 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID+L + + A + L +M G P ++ TY ++L + + EA L K+M
Sbjct: 377 NTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVG 436
Query: 444 ----------SCLVQNLSCEMVVSER---FSEVADKSA--SFTDTSSLMD------KSDL 482
S LV L E +VSE F + +K + ++LM+ K +
Sbjct: 437 RNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNE 496
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A + + M + ++ N I +C + + A + +M K+ P T+ ++
Sbjct: 497 ARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMK 556
Query: 543 GHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602
G + D L+ K+ SG+L Y LL + G+ + +++ MK++
Sbjct: 557 GLCYVGRLLDAQELF---KKMCSSGMLPTLMT-YSILLNGLCKHGHLDEALKLFKSMKEK 612
Query: 603 NMYVDKLMY 611
+ D ++Y
Sbjct: 613 KLEPDIILY 621
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 75/390 (19%), Positives = 144/390 (36%), Gaps = 45/390 (11%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSI-IILAQIHEMNCQRDEL 231
I PD + +N ++H G + + + M Q G D + II+ +++ D
Sbjct: 264 IPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAA 323
Query: 232 KKFKCYIDQLSTPFAHHYQQFYESLLSLH--------FKFDDIDAAGELILDMNRYREPL 283
+DQ P Y L L FK + ++ N + L
Sbjct: 324 DFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSL 383
Query: 284 PNPKLRQDAQK--PYLISIGSPNLRCGLKLQIMPELLEKDSIL-------KMEGKQELVL 334
+L DA + ++ G P P + +IL +++ +L
Sbjct: 384 CKDRLVNDAMEFLSEMVDRGIP-----------PNAVTYSTILHGFCNLGQLDEATQLFK 432
Query: 335 FRNGKLLHSNR-AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL 393
G+ + N + L++G + G SE W+ ++ ++ T + +++
Sbjct: 433 EMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTY-NALMNGYCLR 491
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
+ A + + M G D +Y L+ Y + +A+ALL QM L N
Sbjct: 492 CKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTY 551
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
+ + V L+D A+ L ++M L T+ + + CK
Sbjct: 552 NTIMKGLCYVG----------RLLD----AQELFKKMCSSGMLPTLMTYSILLNGLCKHG 597
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ +ALK+++ M+E K+ P + + L+ G
Sbjct: 598 HLDEALKLFKSMKEKKLEPDIILYTILIEG 627
>gi|255661172|gb|ACU25755.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 426
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 131/312 (41%), Gaps = 40/312 (12%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ + D Y +++ + K K+FREA +L+ +MR + + N L V +++F
Sbjct: 71 KRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY--------KSEF 615
IE + Y T++ + + G +R + ++ + +D+++Y +S
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERSGL 304
Query: 616 LKHHKHLYRRLK 627
+ H K L LK
Sbjct: 305 VAHAKRLLHELK 316
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EMR ++ + + +
Sbjct: 68 SRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 110/262 (41%), Gaps = 36/262 (13%)
Query: 365 WLLLSIKKE--HHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST--TYKS 420
W+ S + E H++F C+ ++ L++ A+ I D EL G D+ TY +
Sbjct: 56 WVTRSHRGESIHNNF----TCNCLLRTLVKARRHHQAYQIFRD-ELLGQHCDTNHITYNT 110
Query: 421 LLTAYYKVKMFREAEALLKQMRKS----------------CLVQNLSCEMVVSERFSEVA 464
L+ + K A LL +M++ C NLS M E A
Sbjct: 111 LIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVECA 170
Query: 465 DKSASFTD-TSSLMDKSDLAES--LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
S F L + L+E+ +I+EM E + + NS I CK + +A ++
Sbjct: 171 PDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQL 230
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETL 579
M + K+RP + T+ L+YG+ + I+R I+SG D+ + +L
Sbjct: 231 LETMVKRKVRPNLVTYNTLIYGYCKTGC---TGLAHQLIERMIQSG---THPDVVTFNSL 284
Query: 580 LLNFLQGGYFERVMEVIGYMKK 601
+ F Q ++ EV+ MKK
Sbjct: 285 ISGFCQKSKIDKACEVLHLMKK 306
>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
[Vitis vinifera]
gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
Length = 636
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/211 (18%), Positives = 90/211 (42%), Gaps = 15/211 (7%)
Query: 335 FRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG 394
+N +++ + R +INGY K GK + L ++ + + + +I + +
Sbjct: 273 MQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRN-YGVHPNLVIFNSLIKGFLDIT 331
Query: 395 FLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEM 454
+ + L ME G D T+ +++ A+ V + + + + M K+ + ++
Sbjct: 332 DTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFS 391
Query: 455 VVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKM 514
++++ + + + AESL+ M + + + I +C
Sbjct: 392 ILAKGYVRAGE--------------PEKAESLLTAMGKSGVQPNVVIFTTIISGWCSAGK 437
Query: 515 IGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
+ A ++Y +M EM I P ++TF L++G+
Sbjct: 438 MEYASRVYEKMCEMGICPNLKTFETLIWGYG 468
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 19/214 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ LI+ G + A I + + GH TY +LL A + K F+ +L+ ++ K
Sbjct: 75 TKLMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEK 134
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ L + S F+ + + +F+++ ++ + A + ++M++ T N
Sbjct: 135 NGLKPD-------SVFFNAMIN---AFSESGNVKE----AMKIFRKMKDRGCKPTTSTFN 180
Query: 504 SSIYFFCKGKMIGDALKIYRRM-QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
+ I + M + LK+ M QE ++P TF L+ + + IT W + +
Sbjct: 181 TLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCN---KKRITEAWNVVYK 237
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVI 596
SG L Y TL + Q G R +I
Sbjct: 238 MAASG-LQPDVVTYNTLARAYAQNGETSRAEGMI 270
>gi|410110073|gb|AFV61116.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
virgata]
Length = 424
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 133/312 (42%), Gaps = 40/312 (12%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 20 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 77
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +MR + ++ N L V +++F
Sbjct: 78 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKF 137
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E + + L+D + A+ L MR+ + N+
Sbjct: 138 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 197
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 198 LRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 256
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY--------KSEF 615
IE + Y T++ + + G +R + ++ + +D+++Y ++
Sbjct: 257 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMXVAYERAGL 311
Query: 616 LKHHKHLYRRLK 627
+ H K L LK
Sbjct: 312 VAHAKRLLHELK 323
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 110/261 (42%), Gaps = 28/261 (10%)
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
H + D+M D TY +L+T + K +F A + L++M + + +L + E
Sbjct: 1 HGLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIEL 60
Query: 460 FSEVADKSASFTDTSSL------------------MDKSDL---AESLIQEMREEAALST 498
++ D S + + S L K+ L A SLI EMR +
Sbjct: 61 SRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPN 120
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILW 557
++ + + + K +AL ++ M+E+K + T ++ + L M ++ + W
Sbjct: 121 TASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 180
Query: 558 GDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLK 617
G K IE V++ Y TLL + F + + M+++N+ + + Y S +
Sbjct: 181 GMRKMGIEPNVVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMI 235
Query: 618 HHKHLYRRLKVSNARTEAQSK 638
+ K L K +N E Q++
Sbjct: 236 YGKTLEHE-KANNLIQEMQNR 255
>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
Length = 410
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 102/252 (40%), Gaps = 25/252 (9%)
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
T C+ +++ + G + A + D+M L G + TY +L+ Y+ + AL ++
Sbjct: 39 TACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEE 98
Query: 441 MRKSCLVQNLS---------CEMVVSERFSEVADKSASFTDTSSLMDKSDL--------- 482
MR+ + NL C ER + D+ +++ + L
Sbjct: 99 MRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGK 158
Query: 483 ---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
A L+ MR E +I N + + K + +AL + +M+ +P+ T+
Sbjct: 159 LWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNM 218
Query: 540 LVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
L+ G RD+T + E G L ++ Y L+ +F + + + E++ M
Sbjct: 219 LIAGFCRA---RDMTRANRALSDMKERG-LEPTKVTYTILIDSFARENHMGKAFEILAGM 274
Query: 600 KKQNMYVDKLMY 611
+K + VD Y
Sbjct: 275 EKAGLEVDAHTY 286
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 15/224 (6%)
Query: 337 NGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL 396
NG+ A + +ING + G+ E++ +L + K H +C+ VI+ ++ L
Sbjct: 422 NGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTK-HGCKPNPHVCNAVINGFVRASKL 480
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
E A +M G TY +L+ K + F EA AL+K+M N+ ++
Sbjct: 481 EDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLL 540
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ K D+A +L + E+ + N I+ C +
Sbjct: 541 MNGLCQ--------------GKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVE 586
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
DAL++Y M++ K P + T L+ G + + + +W I
Sbjct: 587 DALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHI 630
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 92/209 (44%), Gaps = 21/209 (10%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+ A ++L+ M G D +Y +L+ + K +A L +M + + +++C +
Sbjct: 165 FDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNI 224
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+ + F + D +++ S++ E L ++ + I N I CK
Sbjct: 225 LIDGFFKKGD----------ILNASEIWERL---LKGPSVYPNIPSYNVMINGLCKCGKF 271
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL 575
++ +I+ RM++ + + T+ L++G T ++ ++ N VS D+
Sbjct: 272 DESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAEN------GVSPDV 325
Query: 576 --YETLLLNFLQGGYFERVMEVIGYMKKQ 602
Y T+L +L+ G E +E+ M+K+
Sbjct: 326 VVYNTMLNGYLRAGRIEECLELWKVMEKE 354
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 88/229 (38%), Gaps = 18/229 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDM-ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
VI A + + A DI M E+ G +Y SLL A + + EAE+
Sbjct: 84 VIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETM 143
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
L NL ++ + ++ + F D A+ L+ M E+ ++ +
Sbjct: 144 GLSPNLQTYNILIK----ISCRKKQF----------DKAKELLNWMWEQGFSPDVFSYGT 189
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
I K + DALK++ M E + P V + L+ G + + +W +R +
Sbjct: 190 LINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIW---ERLL 246
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + + Y ++ + G F+ E+ MKK D Y +
Sbjct: 247 KGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYST 295
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 105/260 (40%), Gaps = 31/260 (11%)
Query: 379 ESTLCSD------VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
E C+D ++ L + G+L A IL++ E +D+ Y S++ +
Sbjct: 387 EKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLD 446
Query: 433 EAEALLKQMRK-SCLVQNLSCEMVVSE--RFSEVADKSASFTDT------------SSLM 477
E +L QM K C C V++ R S++ D F + ++L+
Sbjct: 447 EVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLI 506
Query: 478 DKSDLAE------SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR 531
+ AE +L++EM + + + + C+GK + AL ++ + E +
Sbjct: 507 NGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFK 566
Query: 532 PTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFER 591
P V+ +++G S D L+ ++K+ L + TL+ F + FER
Sbjct: 567 PDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVT----HNTLMEGFYKVRDFER 622
Query: 592 VMEVIGYMKKQNMYVDKLMY 611
++ ++ + D + Y
Sbjct: 623 ASKIWDHILQYGPQPDIISY 642
>gi|452823780|gb|EME30788.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 925
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 106/476 (22%), Positives = 194/476 (40%), Gaps = 70/476 (14%)
Query: 175 PDTMIFNLVLHACV---RFGSSLKGQHIMELMSQTGVVADAHSIIIL----AQIHEMNCQ 227
PD+ +++ +L ACV RF +LK + E + Q G V DAH L + ++
Sbjct: 467 PDSYVYSSLLQACVRSNRFDLALK---VYEHLQQEGYVMDAHMYNTLVNGAGSLGDLETA 523
Query: 228 RDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDM---NRYREPLP 284
+++ + Y L T + + L+S K DI A L L+M N LP
Sbjct: 524 ERLVRQAQEYNVGLDTALCNTF------LVSCA-KHHDISRAEHLFLEMSNGNMGSLALP 576
Query: 285 NPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSN 344
N K Y I I NL C + P +E+ L+M +Q + F +
Sbjct: 577 N-------GKTYNILI---NLYCKMN----PPQVER--ALEMVERQRMYGFSPDE----- 615
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI-- 402
+I+ Y + + L ++ E VI+ L + G+L+ A ++
Sbjct: 616 STFCPIIDAYFRVNDPFKAIELFKKLRTEGSPKLSRVTYDTVINGLGRSGYLDDAFEVFR 675
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ-----MRKSCLVQNLSCEMVVS 457
+ E + +D TTY +LL A+ + EAE ++ + S N+ + ++S
Sbjct: 676 IRASETSLESLDDTTYNNLLNAFVENNRLDEAERFFQESLASGFQPSTATYNIRLKALLS 735
Query: 458 ER--------FSEVADKS--ASFTDTSSLMDKSDLA------ESLIQEMREEAALSTIYK 501
+ E+ + + ++L+D + +S++ +R+ IY
Sbjct: 736 QGHLMQGFKLVEEMVSRGIQPNLITFNTLLDIALRGQHYVYIDSIVNAIRKSNVRPDIYT 795
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-I 560
N + + + A +IY M IRP V T+ YL+ + R+ T+ +
Sbjct: 796 FNLRLQAAYRLGVFMKAEEIYSEMIASNIRPDVYTYVYLM----ACAGRRNDTVQGVKYL 851
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFL 616
K ++ G Y LL ++ G E V+ ++ MK ++Y+D+ + +S F+
Sbjct: 852 KEAVKKGRQPKGPIAYRPLLHAAMRNGSIEDVITIVNAMKAVSLYLDEKL-QSRFI 906
>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial; Flags: Precursor
Length = 602
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 103/262 (39%), Gaps = 19/262 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++NG + G S L+ LL +E + + S +ID+L + G ++AA + +ME
Sbjct: 199 IVNGICRSGDTS-LALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETK 257
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G TY SL+ K + + LLK M +V N+ V+ + F +
Sbjct: 258 GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG----- 312
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
K A L +EM I N+ + +C + +A + M K
Sbjct: 313 ---------KLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
P + TF L+ G+ ++ D ++ RNI L + Y L+ F Q G
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVF----RNISKRGLVANAVTYSILVQGFCQSGKI 419
Query: 590 ERVMEVIGYMKKQNMYVDKLMY 611
+ E+ M + D + Y
Sbjct: 420 KLAEELFQEMVSHGVLPDVMTY 441
>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 884
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 21/187 (11%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
S+ CS ++ L + G L+ A D+L M G P++ + LL Y+KV A +L
Sbjct: 522 SSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLW 581
Query: 439 KQMRK----------SCLVQNLSCEMVVS---ERFSEVADKS---ASFTDTS---SLMDK 479
+M S + LS +V E FSE++ K +F S L +
Sbjct: 582 YEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNC 641
Query: 480 SDLAESLI--QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
L E+L +EMR++ L I+ N I FCK + A + M + + P T+
Sbjct: 642 GKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTY 701
Query: 538 YYLVYGH 544
L+ G+
Sbjct: 702 NTLIGGY 708
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 111/263 (42%), Gaps = 34/263 (12%)
Query: 350 LINGYKKHGKNSE-LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
LIN Y+ G+ S+ L +L L IK S +I A G + A I + ++
Sbjct: 319 LINAYRIRGRTSDALGFLHLMIKNGCKP--SLITFSTIITAFCNEGNVVEARKIFEGIQE 376
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV---SERFSEVAD 465
G + Y +L++ Y+K + +A L ++MR + + + ++ + ++ + AD
Sbjct: 377 VGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAGNYKYGKEAD 436
Query: 466 KSASFTDTS--------SLMDKS----------DLAESLIQEMREEAALSTIYKLNSSIY 507
F D S SL D S D A +++M E+ ++ NS I
Sbjct: 437 SYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIA 496
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS---LEMYRDITILWGDIKRNI 564
+ + +A K Y+ M + P+ T ++ G S L+ RD+ + + I
Sbjct: 497 AYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDL------LYKMI 550
Query: 565 ESGVLAVSRDLYETLLLNFLQGG 587
+ G L V++ + LL + + G
Sbjct: 551 DKG-LPVNKVAFTVLLDGYFKVG 572
>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Vitis vinifera]
Length = 625
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/228 (19%), Positives = 95/228 (41%), Gaps = 18/228 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
V+D L + G +E ++D++ G + TY + + Y+K +L M K
Sbjct: 231 VLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEG 290
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ N+ ++ FS + K + A+ L +EMRE+ + +Y S
Sbjct: 291 VACNVVTYTLLIHGFSNIG--------------KIEEAQRLFEEMREKGIEADVYVYTSI 336
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I C+ + AL ++ M + + P+ T+ L++G +L + ++
Sbjct: 337 ISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNE----MQ 392
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ ++ ++ TL+ + + G + + + M+K+ + D Y S
Sbjct: 393 GKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNS 440
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 24/173 (13%)
Query: 375 HSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREA 434
H++G +I + + G +EAA ++++M+ G ++ + +L+ Y + M EA
Sbjct: 366 HTYGA------LIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEA 419
Query: 435 EALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSL--MDKSDLAESLIQEMRE 492
L VV E+ +D A + S L +++ D A+ L+ M E
Sbjct: 420 LRL----------------QVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVE 463
Query: 493 EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
+ I +CK +A +++R M+E P + T+ L+ G+S
Sbjct: 464 RGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYS 516
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 22/225 (9%)
Query: 325 KMEGKQELVLFRNGKLLHSNRAM-AKLINGYKKHGKNSELSWLLLSIKK---EHHSFGES 380
+ME Q LV GK + N + LI+GY + G E L + ++K E F +
Sbjct: 380 QMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYN 439
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
++ S L +L + A +L M G ++ ++ +L+ Y K F EA+ + ++
Sbjct: 440 SIAS----GLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFRE 495
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
M + V N+ V+ + +S K + + L D E+ + +Y
Sbjct: 496 MEEKGNVPNIITYNVLIDGYS----KRGNMKEAHKLKD----------ELENRGLIPDVY 541
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
S I+ C + ALK++ M + + P V T+ ++ G S
Sbjct: 542 TCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLS 586
>gi|255661176|gb|ACU25757.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 426
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K+FREA +L+ +MR + ++ N L V +++F
Sbjct: 71 KRSGFMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQHRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAVLFQKLRSSGVEIDQVLYQTMIVAYER 301
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 98/235 (41%), Gaps = 35/235 (14%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + ++V+ E++ K ++
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQD----RVPGDLVLYSNLIELSRKLCDYSKA 63
Query: 474 SSLMDK-------SDL------------------AESLIQEMREEAALSTIYKLNSSIYF 508
S+ + DL A SLI EMR + ++ +
Sbjct: 64 ISIFSRLKRSGFMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTLLTM 123
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESG 567
+ + K +AL ++ M+E+K + T ++ + L M ++ + WG K IE
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPN 183
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHL 622
V++ Y TLL + F + + M+++N+ + + Y S + + K L
Sbjct: 184 VVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTL 233
>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
Length = 368
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/323 (21%), Positives = 124/323 (38%), Gaps = 34/323 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+ING K G+ + L + E + S +ID+L + + A DI M+
Sbjct: 16 IINGLCKIGETVAAAGLFKKMG-EAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAK 74
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK--- 466
G + TY SL+ +REA A+L +M ++ N+ ++ F + +
Sbjct: 75 GISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEA 134
Query: 467 ------------SASFTDTSSLMDKSDL------AESLIQEMREEAALSTIYKLNSSIYF 508
+ SSLM+ L A L M + ++ N I
Sbjct: 135 RGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILING 194
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
+CK K IG+A +++ M + P + ++ L+ G L R+ L+ ++ N
Sbjct: 195 YCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPD 254
Query: 569 LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY--------KSEFLKHHK 620
L Y LL F + GY + + M+ + + +MY KS LK +
Sbjct: 255 LCT----YSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEAR 310
Query: 621 HLYRRLKVSNARTEAQSKRLVNV 643
L+ L V + + +L +
Sbjct: 311 KLFSELFVQGLQPNMKHWKLFEI 333
>gi|255561941|ref|XP_002521979.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538783|gb|EEF40383.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 496
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 36/237 (15%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK-QMRKS 444
++ L + G L++A D+L+DM L+G P D TY +++ + F +A K Q+R+
Sbjct: 174 MVGGLCKRGKLKSAIDLLEDMSLSGCPPDVVTYNTIIRCMFHNANFDQAVRFWKEQLRRG 233
Query: 445 C--------LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAAL 496
C ++ L C+ + R EV +++M E
Sbjct: 234 CPPYLITYTILIELVCKHCGTVRAMEV-----------------------LEDMAIEGCY 270
Query: 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
+ NS + F CK DA I M + P T+ L++ S ++ ++ +
Sbjct: 271 PDLVTYNSLVNFTCKQGKYEDAALIIINMLSHGMEPNAITYNTLLHSLCSCGLWDEVDEI 330
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+K + Y TL+ + G R ++ M +N D + Y +
Sbjct: 331 LTVMKETSHPPTVVT----YNTLINGLCKSGLVNRAIDFFHQMVYENCLPDIVTYNT 383
>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/228 (19%), Positives = 95/228 (41%), Gaps = 18/228 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
V+D L + G +E ++D++ G + TY + + Y+K +L M K
Sbjct: 235 VLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEG 294
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ N+ ++ FS + K + A+ L +EMRE+ + +Y S
Sbjct: 295 VACNVVTYTLLIHGFSNIG--------------KIEEAQRLFEEMREKGIEADVYVYTSI 340
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I C+ + AL ++ M + + P+ T+ L++G +L + ++
Sbjct: 341 ISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNE----MQ 396
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ ++ ++ TL+ + + G + + + M+K+ + D Y S
Sbjct: 397 GKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNS 444
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 22/225 (9%)
Query: 325 KMEGKQELVLFRNGKLLHSNRAM-AKLINGYKKHGKNSELSWLLLSIKK---EHHSFGES 380
+ME Q LV GK + N + LI+GY + G E L + ++K E F +
Sbjct: 384 QMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYN 443
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
++ S L +L + A +L M G ++ ++ +L+ Y K F EA+ + ++
Sbjct: 444 SIAS----GLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFRE 499
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
M + V N+ V+ + +S K + + L D E+ + +Y
Sbjct: 500 MEEKGNVPNIITYNVLIDGYS----KRGNMKEAHKLKD----------ELENRGLIPDVY 545
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
S I+ C + ALK++ M + + P V T+ ++ G S
Sbjct: 546 TCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLS 590
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 24/173 (13%)
Query: 375 HSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREA 434
H++G +I + + G +EAA ++++M+ G ++ + +L+ Y + M EA
Sbjct: 370 HTYGA------LIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEA 423
Query: 435 EALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSL--MDKSDLAESLIQEMRE 492
L VV E+ +D A + S L +++ D A+ L+ M E
Sbjct: 424 LRL----------------QVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVE 467
Query: 493 EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
+ I +CK +A +++R M+E P + T+ L+ G+S
Sbjct: 468 RGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYS 520
>gi|410110127|gb|AFV61143.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
origanoides]
Length = 408
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 124/268 (46%), Gaps = 23/268 (8%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 19 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 76
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ +G D Y +++ + K K+FREA +L+ +M+ + ++ N + + + E
Sbjct: 77 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLXMYVE---- 132
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ F + A S+ EMRE L + N I + + M +A K++ M+
Sbjct: 133 NKKFLE----------ALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKLFWGMR 182
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQ 585
+M I P V ++ L+ + E++ + L+ ++R NIE V+ Y ++++ + +
Sbjct: 183 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YNSMMMIYGK 237
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ +I M+ + + + + Y +
Sbjct: 238 TLEHEKANNLIQEMQSRGIEPNSITYST 265
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 109/259 (42%), Gaps = 28/259 (10%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
+ D+M D TY +L+T + K +F A + L++M + + +L + E
Sbjct: 2 LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61
Query: 462 EVADKSASFTDTSSL------------------MDKSDL---AESLIQEMREEAALSTIY 500
++ D S + + S L K+ L A SLI EM+ +
Sbjct: 62 KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGD 559
++ + + + K +AL ++ M+E+K + T ++ + L M ++ + WG
Sbjct: 122 SYSTLLXMYVENKKFLEALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKLFWGM 181
Query: 560 IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHH 619
K IE V++ Y TLL + F + + M+++N+ + + Y S + +
Sbjct: 182 RKMGIEPNVVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 236
Query: 620 KHLYRRLKVSNARTEAQSK 638
K L K +N E QS+
Sbjct: 237 KTLEHE-KANNLIQEMQSR 254
>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 15/224 (6%)
Query: 337 NGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL 396
NG+ A + +ING + G+ E++ +L + K H +C+ VI+ ++ L
Sbjct: 422 NGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTK-HGCKPNPHVCNAVINGFVRASKL 480
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
E A +M G TY +L+ K + F EA AL+K+M N+ ++
Sbjct: 481 EDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLL 540
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ K D+A +L + E+ + N I+ C +
Sbjct: 541 MNGLCQ--------------GKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVE 586
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
DAL++Y M++ K P + T L+ G + + + +W I
Sbjct: 587 DALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHI 630
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 92/209 (44%), Gaps = 21/209 (10%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+ A ++L+ M G D +Y +L+ + K +A L +M + + +++C +
Sbjct: 165 FDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNI 224
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+ + F + D +++ S++ E L ++ + I N I CK
Sbjct: 225 LIDGFFKKGD----------ILNASEIWERL---LKGPSVYPNIPSYNVMINGLCKCGKF 271
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL 575
++ +I+ RM++ + + T+ L++G T ++ ++ N VS D+
Sbjct: 272 DESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAEN------GVSPDV 325
Query: 576 --YETLLLNFLQGGYFERVMEVIGYMKKQ 602
Y T+L +L+ G E +E+ M+K+
Sbjct: 326 VVYNTMLNGYLRAGRIEECLELWKVMEKE 354
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 18/229 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDM-ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
VI A + + A DI M E+ G +Y SLL A + + EAE+
Sbjct: 84 VIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETM 143
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
L NL ++ S + D A+ L+ M E+ ++ +
Sbjct: 144 GLSPNLQTYNIL--------------IKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGT 189
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
I K + DALK++ M E + P V + L+ G + + +W +R +
Sbjct: 190 LINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIW---ERLL 246
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + + Y ++ + G F+ E+ MKK D Y +
Sbjct: 247 KGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYST 295
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 99/244 (40%), Gaps = 31/244 (12%)
Query: 379 ESTLCSD------VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
E C+D ++ L + G+L A IL++ E +D+ Y S++ +
Sbjct: 387 EKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLD 446
Query: 433 EAEALLKQMRK-SCLVQNLSCEMVVSE--RFSEVADKSASFTDT------------SSLM 477
E +L QM K C C V++ R S++ D F + ++L+
Sbjct: 447 EVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLI 506
Query: 478 DKSDLAE------SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR 531
+ AE +L++EM + + + + C+GK + AL ++ + E +
Sbjct: 507 NGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFK 566
Query: 532 PTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFER 591
P V+ +++G S D L+ ++K+ L + TL+ F + FER
Sbjct: 567 PDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVT----HNTLMEGFYKVRDFER 622
Query: 592 VMEV 595
++
Sbjct: 623 ASKI 626
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 124/280 (44%), Gaps = 34/280 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMEL 408
++NG K G +++L++ LL+ K E L + +ID L + ++ A ++ +ME
Sbjct: 841 VVNGLCKRG-DTDLAFNLLN-KMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 898
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM--RK--------SCLVQNLSCE--MVV 456
G + TY SL++ + +A LL M RK S L+ E +V
Sbjct: 899 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 958
Query: 457 SER-FSEVADKS--ASFTDTSSLM------DKSDLAESLIQEMREEAALSTIYKLNSSIY 507
+E+ + E+ +S S SSL+ D+ D A+ + + M + + N+ I
Sbjct: 959 AEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIK 1018
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEMYRDITILWGDIKRNI 564
FCK K + + ++++R M + + T+ L+ G +M ++I K +
Sbjct: 1019 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI------FKEMV 1072
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
GV + Y TLL + G E+ M V Y+++ M
Sbjct: 1073 SDGV-PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 1111
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 98/255 (38%), Gaps = 37/255 (14%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID+L + + A D ++E G + TY +L+ + +A LL M K
Sbjct: 299 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 358
Query: 446 LVQNL-------------SCEMVVSERFSEVADKS--------ASFTDTSSLMDKSDLAE 484
+ N+ + E F E+ S +S + L D+ D A
Sbjct: 359 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 418
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ M + L+ + N+ I FCK K + D +K++R M + + T+ L+ G
Sbjct: 419 QMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 478
Query: 545 SSLEMYRDITILWGDIKRNIE----SGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGY 598
GD+ + E +S D+ Y LL G E+ + +
Sbjct: 479 ----------FQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED 528
Query: 599 MKKQNMYVDKLMYKS 613
M+K+ M +D + Y +
Sbjct: 529 MQKREMDLDIVTYTT 543
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A SL+ +M E I N+ I CK K + DA ++ ++ IRP V T+ LV
Sbjct: 277 AVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVN 336
Query: 543 GHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
G + + D L D IK+ I V+ Y LL F++ G E+ M +
Sbjct: 337 GLCNSSRWSDAARLLSDMIKKKITPNVIT-----YSALLDAFVKNGKVLEAKELFEEMVR 391
Query: 602 QNMYVDKLMYKS 613
++ D + Y S
Sbjct: 392 MSIDPDIVTYSS 403
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 15/178 (8%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+ A ++D M + G+ ++ T+ +L+ + EA AL+ +M +L V
Sbjct: 781 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGV 840
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
V + D +DLA +L+ +M + + N+ I CK K +
Sbjct: 841 VVNGLCKRGD--------------TDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHM 886
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVS 572
DAL +++ M+ IRP V T+ L+ + + D + L D I+R I V S
Sbjct: 887 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 944
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 81/201 (40%), Gaps = 20/201 (9%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+ + K K E + ++M + LV N ++ + + D
Sbjct: 1009 DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD-------- 1060
Query: 474 SSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT 533
D+A+ + +EM + I N+ + CK + A+ ++ +Q K+ PT
Sbjct: 1061 ------CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 1114
Query: 534 VETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
+ T+ ++ G D L+ ++ + ++ V+A Y T++ F + G E
Sbjct: 1115 IYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVA-----YNTMISGFCRKGSKEEA 1169
Query: 593 MEVIGYMKKQNMYVDKLMYKS 613
+ MK+ + Y +
Sbjct: 1170 DALFKEMKEDGTLPNSGCYNT 1190
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 92/213 (43%), Gaps = 20/213 (9%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
++D M G+ D+ T+ +L+ + EA AL+ +M + NL VV
Sbjct: 177 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLC 236
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
+ D +DLA +L+ +M + + N+ I CK + + DAL +
Sbjct: 237 KRGD--------------TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNL 282
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLL 580
++ M+ IRP V T+ L+ S + D + L D I++ I ++ + L+
Sbjct: 283 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT-----FNALI 337
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
F++ G F ++ M K+++ D Y S
Sbjct: 338 DAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNS 370
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 122/294 (41%), Gaps = 44/294 (14%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++NG K G +++L+ LL+ + + + + +ID+L + ++ A ++ +ME
Sbjct: 231 VVNGLCKRG-DTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK 289
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC------------EMVVS 457
G + TY SL++ + +A LL M + + NL + V +
Sbjct: 290 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA 349
Query: 458 ERFSEVADKSA---------SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
E+ + K + S + + D+ D A+ + + M + + N+ I
Sbjct: 350 EKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKG 409
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-------IK 561
FCK K + D +++R M + T+ L+ G ++ D GD K
Sbjct: 410 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG-----LFHD-----GDCDNAQKVFK 459
Query: 562 RNIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + G V D+ Y LL G E+ +EV YM+K + +D +Y +
Sbjct: 460 QMVSDG---VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 510
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Query: 412 PMDSTT-YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASF 470
P+ S + LL+A K+K F +L ++M++ +V L ++ F + S
Sbjct: 81 PLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQIS--- 137
Query: 471 TDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI 530
LA +L+ +M + +I L+S + +C GK I DA+ + +M EM
Sbjct: 138 -----------LALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGY 186
Query: 531 RPTVETFYYLVYG 543
RP TF L++G
Sbjct: 187 RPDTITFTTLIHG 199
>gi|410110103|gb|AFV61131.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
alba]
Length = 419
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 124/268 (46%), Gaps = 23/268 (8%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 19 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAIAIFSRL 76
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ +G D Y +++ + K K+FREA +L+ +M+ + ++ N S + + E
Sbjct: 77 KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTSSYSTLLTMYVE---- 132
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ F + A S+ EMRE L + N I + + M +A K++ M+
Sbjct: 133 NKKFLE----------ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 182
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQ 585
+M I P V ++ L+ + E++ + L+ ++R NIE V+ Y ++++ + +
Sbjct: 183 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YNSMMMIYGK 237
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ +I M+ + + + + Y +
Sbjct: 238 TLEHEKANNLIQEMQSRGIEPNSITYST 265
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 108/259 (41%), Gaps = 28/259 (10%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
+ D+M D TY +L+T + K +F A + L++M + + +L + E
Sbjct: 2 LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61
Query: 462 EVADKSASFTDTSSL------------------MDKSDL---AESLIQEMREEAALSTIY 500
++ D S + S L K+ L A SLI EM+ +
Sbjct: 62 KLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTS 121
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGD 559
++ + + + K +AL ++ M+E+K + T ++ + L M ++ + WG
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181
Query: 560 IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHH 619
K IE V++ Y TLL + F + + M+++N+ + + Y S + +
Sbjct: 182 RKMGIEPNVVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 236
Query: 620 KHLYRRLKVSNARTEAQSK 638
K L K +N E QS+
Sbjct: 237 KTLEHE-KANNLIQEMQSR 254
>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
Length = 1356
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 100/235 (42%), Gaps = 19/235 (8%)
Query: 366 LLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY 425
LL ++KE S E T + +I+ ++ G + A + ++M + TY +L+ +
Sbjct: 325 LLKKMRKEMISPNEVTY-NTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGH 383
Query: 426 YKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES 485
V F EA LL M + L R +EV + + +K +LA+
Sbjct: 384 CHVGDFEEALRLLDHMEAAGL------------RLNEVT--YGTLLNGLCKHEKFELAKR 429
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
L++ MR + I CK M+ +A+++ M + + P V T+ L+ G
Sbjct: 430 LLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFC 489
Query: 546 SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
+ + + I R SG L +++ +Y TL+ NF Q G M+V M
Sbjct: 490 RVGNIKSAKEI---ICRMYRSG-LVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMN 540
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 30/259 (11%)
Query: 359 KNSELSWLLLSIKKEHHSFGESTLCSDV------IDALIQLGFLEAAHDILDDMELAGHP 412
K +EL W L + +C +V I+ L G L+ A ++L ME G
Sbjct: 212 KRTELVWSLF------REMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFV 265
Query: 413 MDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTD 472
TY +LL Y K ++ A L+ M + + + ++ F D
Sbjct: 266 PTIVTYNTLLNWYCKKGRYKAAIELIDYM----ICKGIEADVCTYN----------VFID 311
Query: 473 TSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP 532
+S A L+++MR+E N+ I F K IG A +++ M + + P
Sbjct: 312 NLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSP 371
Query: 533 TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
T+ L+ GH + + + L ++E+ L ++ Y TLL + FE
Sbjct: 372 NCVTYNALIGGHCHVGDFEEALRLL----DHMEAAGLRLNEVTYGTLLNGLCKHEKFELA 427
Query: 593 MEVIGYMKKQNMYVDKLMY 611
++ M+ +M V + Y
Sbjct: 428 KRLLERMRVNDMVVGHIAY 446
Score = 39.3 bits (90), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 15/200 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
L+NG KH K LL ++ G + +ID L + G L+ A ++ +M
Sbjct: 412 GTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAY-TVLIDGLCKNGMLDEAVQLVGNMY 470
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY SL+ + +V + A+ ++ +M +S LV N + F + + +
Sbjct: 471 KDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVT 530
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
A + M + + N + C+ +G+A K M
Sbjct: 531 E--------------AMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSR 576
Query: 528 MKIRPTVETFYYLVYGHSSL 547
+ + P T+ ++ G+ S+
Sbjct: 577 IGLVPNSITYDCIINGYGSI 596
>gi|410110087|gb|AFV61123.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
urticoides]
Length = 423
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 124/268 (46%), Gaps = 23/268 (8%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 3 STLITHFGKEGLFDAALSWL--QKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ +G D Y +++ + K K+FREA +L+ +M+ + ++ N + + + E
Sbjct: 61 KSSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE---- 116
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ F + A S+ EMRE L + N I + + M +A K++ M+
Sbjct: 117 NKKFLE----------ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 166
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQ 585
+M I P V ++ L+ + E++ + L+ ++R NIE V+ Y ++++ + +
Sbjct: 167 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YNSMIMIYGK 221
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ +I M+ + + + + Y +
Sbjct: 222 TLEHEKANNLIQEMQSRGIEPNSITYST 249
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 106/244 (43%), Gaps = 28/244 (11%)
Query: 417 TYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD----------- 465
TY +L+T + K +F A + L++M + + +L + E ++ D
Sbjct: 1 TYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60
Query: 466 KSASFTD-------TSSLMDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
KS+ FT ++ K+ L A SLI EM+ + ++ + + + K
Sbjct: 61 KSSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKF 120
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAVSRD 574
+AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 121 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS---- 176
Query: 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTE 634
Y TLL + F + + M+++N+ + + Y S + + K L K +N E
Sbjct: 177 -YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHE-KANNLIQE 234
Query: 635 AQSK 638
QS+
Sbjct: 235 MQSR 238
>gi|410110093|gb|AFV61126.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
microcephala]
Length = 440
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 124/268 (46%), Gaps = 23/268 (8%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 19 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 76
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ +G D Y +++ + K K+FREA +L+ +M+ + ++ N + + + E
Sbjct: 77 KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLTMYVE---- 132
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ F + A S+ EMRE L + N I + + M +A K++ M+
Sbjct: 133 NKKFLE----------ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 182
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQ 585
+M I P V ++ L+ + E++ + L+ ++R NIE V+ Y ++++ + +
Sbjct: 183 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YNSMMMIYGK 237
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ +I M+ + + + + Y +
Sbjct: 238 TLEHEKANNLIQEMQSRGIEPNSITYST 265
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 109/259 (42%), Gaps = 28/259 (10%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
+ D+M D TY +L+T + K +F A + L++M + + +L + E
Sbjct: 2 LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61
Query: 462 EVADKSASFTDTSSL------------------MDKSDL---AESLIQEMREEAALSTIY 500
++ D S + + S L K+ L A SLI EM+ +
Sbjct: 62 KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTA 121
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGD 559
++ + + + K +AL ++ M+E+K + T ++ + L M ++ + WG
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181
Query: 560 IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHH 619
K IE V++ Y TLL + F + + M+++N+ + + Y S + +
Sbjct: 182 RKMGIEPNVVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 236
Query: 620 KHLYRRLKVSNARTEAQSK 638
K L K +N E QS+
Sbjct: 237 KTLEHE-KANNLIQEMQSR 254
>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 874
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 96/235 (40%), Gaps = 35/235 (14%)
Query: 363 LSWL-----LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTT 417
+SWL L + E ++F + +I L G LE A ++ D M G + T
Sbjct: 131 VSWLYKDMVLARVSPEAYTF------NLLIGLLCDSGHLEDARELFDKMPARGCEPNEFT 184
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRK-SCLVQNLSCEMVVSERFSEVADKSASFTDTSSL 476
+ L+ Y + + + LL QMR L N+ ++S SF
Sbjct: 185 FGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLIS-----------SFCKEGKT 233
Query: 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ---EMKI-RP 532
D AE L+ +MRE+ + + NS I C I +A +I+R MQ E+ + P
Sbjct: 234 HD----AEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELGLPHP 289
Query: 533 TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
V T+ ++ G M + L +KRN ++ + Y LL ++ G
Sbjct: 290 NVITYKLMLMGFCKEGMLEEAKTLVDTMKRNAN----FINLESYNIWLLGLIRNG 340
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 79/378 (20%), Positives = 134/378 (35%), Gaps = 72/378 (19%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA-------HSIIILAQIHEMN 225
I+PD +N+V+ + G + +M LM + G++ D H ++ E N
Sbjct: 357 IEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEAN 416
Query: 226 CQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPN 285
E+ C +P + SL +K I A L+ MN
Sbjct: 417 NLLHEMISNNC------SPNTYTCNVLLHSL----WKEGRISEAENLLQKMN-------- 458
Query: 286 PKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNR 345
+K Y G + C + + + + D + E+V NG H +
Sbjct: 459 -------EKGY----GVDTVTCNIIINALCNNGQLDKAI------EIV---NGMWTHGSA 498
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
A+ L N + ++ +S KK + S +I L + G L+ A +
Sbjct: 499 ALGNLGNSFIGLVDDT------ISGKK---CTPDLVTYSTIISGLCKAGRLDDAKKKFIE 549
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD 465
M G DS Y + + ++ + A +LK M K C + S +
Sbjct: 550 MMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKR------GCNKTLQTYNSLIL- 602
Query: 466 KSASFTDTSSLMDKSDLAE--SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
L K+ + E LI EMRE+ + N + C+G I DA +
Sbjct: 603 ---------GLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLD 653
Query: 524 RMQEMKIRPTVETFYYLV 541
M + I P + +F L+
Sbjct: 654 EMLQKGISPNISSFRILI 671
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 91/230 (39%), Gaps = 25/230 (10%)
Query: 324 LKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC 383
L +G + L R +L +N LI+ + K GK + L+ ++++ T
Sbjct: 197 LASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFN 256
Query: 384 SDVIDALIQLGFLEAAHDILDDMELA-----GHPMDSTTYKSLLTAYYKVKMFREAEALL 438
S I AL G + A I DM++ HP + TYK +L + K M EA+ L+
Sbjct: 257 SR-ISALCGSGKILEASRIFRDMQIDEELGLPHP-NVITYKLMLMGFCKEGMLEEAKTLV 314
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLI--QEMREEAAL 496
M+++ NL + L+ L E+ I +EM
Sbjct: 315 DTMKRNANFINLESYNIW----------------LLGLIRNGKLLEAWIVLKEMLGIGIE 358
Query: 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546
IY N + CK M+ DA + M I P T+ L++G+ S
Sbjct: 359 PDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCS 408
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 124/280 (44%), Gaps = 34/280 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMEL 408
++NG K G +++L++ LL+ K E L + +ID L + ++ A ++ +ME
Sbjct: 227 VVNGLCKRG-DTDLAFNLLN-KMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM--RK--------SCLVQNLSCE--MVV 456
G + TY SL++ + +A LL M RK S L+ E +V
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344
Query: 457 SER-FSEVADKS--ASFTDTSSLM------DKSDLAESLIQEMREEAALSTIYKLNSSIY 507
+E+ + E+ +S S SSL+ D+ D A+ + + M + + N+ I
Sbjct: 345 AEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIK 404
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEMYRDITILWGDIKRNI 564
FCK K + + ++++R M + + T+ L+ G +M ++I K +
Sbjct: 405 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI------FKEMV 458
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
GV + Y TLL + G E+ M V Y+++ M
Sbjct: 459 SDGV-PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 15/178 (8%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+ A ++D M + G+ ++ T+ +L+ + EA AL+ +M +L V
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGV 226
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
V + D +DLA +L+ +M + + N+ I CK K +
Sbjct: 227 VVNGLCKRGD--------------TDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHM 272
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVS 572
DAL +++ M+ IRP V T+ L+ + + D + L D I+R I V S
Sbjct: 273 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 330
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 81/201 (40%), Gaps = 20/201 (9%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+ + K K E + ++M + LV N ++ + + D
Sbjct: 395 DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD-------- 446
Query: 474 SSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT 533
D+A+ + +EM + I N+ + CK + A+ ++ +Q K+ PT
Sbjct: 447 ------CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 500
Query: 534 VETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
+ T+ ++ G D L+ ++ + ++ V+A Y T++ F + G E
Sbjct: 501 IYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVA-----YNTMISGFCRKGSKEEA 555
Query: 593 MEVIGYMKKQNMYVDKLMYKS 613
+ MK+ + Y +
Sbjct: 556 DALFKEMKEDGTLPNSGCYNT 576
>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
Length = 727
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 106/236 (44%), Gaps = 28/236 (11%)
Query: 416 TTYKSLLTAYYKVKMFREAEALLKQMRK---SCLVQNLSCEMVVS--------ERFSEVA 464
TY +LL ++ K EA LLK+M CL+ +++ +V+S E +++
Sbjct: 244 VTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLV 303
Query: 465 D------KSASFTDT---SSLMDKSDL--AESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
D K++SFT ++L+++ + E+L EM E + T+ N+ I+ K +
Sbjct: 304 DSMRLSKKASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSE 363
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR 573
+ A + M+ M + P + T+ ++ G+ ++ L GD++R LA +
Sbjct: 364 QVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRR----AGLAPTV 419
Query: 574 DLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVS 629
Y TL+ + + G E + M +Q + D Y L + H R L ++
Sbjct: 420 LTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYT--ILMNGSHKVRNLPMA 473
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDV-----IDALIQLGFLEAAHDILD 404
L++ + K G+ E S LL KE + G L +DV I L + G LE A ++D
Sbjct: 249 LLDSFLKEGRKDEASMLL----KEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVD 304
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
M L+ S TY L+TA + ++ EAL +M ++ L V
Sbjct: 305 SMRLS-KKASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTL----VTYNAIIHGL 359
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
KS ++ + A+ EMR L + NS + +CK + +AL +
Sbjct: 360 LKS----------EQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGD 409
Query: 525 MQEMKIRPTVETFYYLVYGHSSL 547
++ + PTV T+ L+ G+ L
Sbjct: 410 LRRAGLAPTVLTYNTLIDGYCRL 432
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 111/264 (42%), Gaps = 40/264 (15%)
Query: 313 IMPELLEKDSIL-------KMEGKQ-ELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELS 364
IMP L+ ++I+ ++E Q + R LL ++NGY K G E
Sbjct: 345 IMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEAL 404
Query: 365 WLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423
WLL +++ + L + +ID +LG LE A + ++M G D TY L+
Sbjct: 405 WLLGDLRRA--GLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMN 462
Query: 424 AYYKVK---MFRE--AEALLKQMRKSCLVQN--LSCEMVVSE-----RFSEVADKSASFT 471
+KV+ M RE E L K ++ C N + E+++ + + EV +
Sbjct: 463 GSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYP 522
Query: 472 D-------------TSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDA 518
D T +L D DL ++ + + ++ I+ C+ ++ +A
Sbjct: 523 DTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCIT----YTCLIHAHCERGLLSEA 578
Query: 519 LKIYRRMQEMKIRPTVETFYYLVY 542
K+ M ++P+V T+ L++
Sbjct: 579 RKLLNGMVSDGLQPSVVTYTILIH 602
>gi|116789832|gb|ABK25404.1| unknown [Picea sitchensis]
Length = 278
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 9/146 (6%)
Query: 313 IMPELLEKDSILKMEGK----QELVLFRNG----KLLHSNRAMAKLINGYKKHGKNSELS 364
I+P L ++++ + GK Q V N L + + +I+ Y K G + +
Sbjct: 6 IVPSLQTYNTMISVYGKARELQNAVQIFNSLQKSGLSVDEKTYSNMISCYGKAGFFQDAA 65
Query: 365 WLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424
L +++E G+ T + ++DA + G A ++ +DM+ G+ DS TY SL+ A
Sbjct: 66 KLFSRMQQEGIKPGKVTY-NTMLDAYARSGLHTRAEEVFNDMQDEGYSPDSYTYLSLICA 124
Query: 425 YYKVKMFREAEALLKQMRKSCLVQNL 450
Y + F+EAE LLK+M + L L
Sbjct: 125 YTNCQRFQEAEDLLKRMHRQGLAPGL 150
Score = 38.9 bits (89), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 74/180 (41%), Gaps = 14/180 (7%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
L+ A I + ++ +G +D TY ++++ Y K F++A L +M++ + + V
Sbjct: 26 LQNAVQIFNSLQKSGLSVDEKTYSNMISCYGKAGFFQDAAKLFSRMQQ----EGIKPGKV 81
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+ +S T AE + +M++E Y S I + +
Sbjct: 82 TYNTMLDAYARSGLHTR----------AEEVFNDMQDEGYSPDSYTYLSLICAYTNCQRF 131
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL 575
+A + +RM + P + F +LV+ + D T L+ +I + LA R +
Sbjct: 132 QEAEDLLKRMHRQGLAPGLVHFNHLVFAFGKAGLVEDATRLYMEIGKAGLKSDLACHRTM 191
>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 80/391 (20%), Positives = 152/391 (38%), Gaps = 37/391 (9%)
Query: 167 SNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNC 226
SN I+P+ + FNLV+ A R G+ + + MS VAD ++ L +H + C
Sbjct: 165 SNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTL--MHGL-C 221
Query: 227 QRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNP 286
+ + +D++ + L+S K D+ A +L+ +M + +PN
Sbjct: 222 NEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNM-FLKGCVPNE 280
Query: 287 KLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSIL------------KMEGKQELVL 334
+ L + + + D ++G + LV
Sbjct: 281 VTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVS 340
Query: 335 FRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG 394
+ + + LI+G K GK E L E + + S +ID L + G
Sbjct: 341 LEEKGYRGNEFSYSSLISGLFKEGK-GEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREG 399
Query: 395 FLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEM 454
+ A + L +M+ GH +S TY SL+ Y++ +A + K+M + + C
Sbjct: 400 KPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYS 459
Query: 455 VVSERFSEVADKSASFTDTSSLMDKSDLAESLI--QEMREEAALSTIYKLNSSIYFFCKG 512
++ + L L E+LI ++M + +S I+ FC
Sbjct: 460 IL----------------INGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNA 503
Query: 513 KMIGDALKIYRRM--QEMKIRPTVETFYYLV 541
+++ +K++ +M K++P V T+ L+
Sbjct: 504 QLVEQGMKLFNQMLCHNPKLQPDVVTYNILL 534
>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 857
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 105/260 (40%), Gaps = 31/260 (11%)
Query: 375 HSFGESTLCSDV------IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV 428
+ ES + D+ + +L LE ++L +ME G+ D T+Y LL AY ++
Sbjct: 264 RTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAEL 323
Query: 429 KMFREAEALLKQMRKSCLVQNLSCEMVV------SERFSEVAD----KSASFTDTSS--- 475
+EA + +QM+ + V N + V+ R+ +V D S TD +
Sbjct: 324 GSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTY 383
Query: 476 ------LMDKSDLAE--SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ E +L +M EE + I+ KG + DA KI M E
Sbjct: 384 NILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNE 443
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
+ P+ + + ++ +Y + +++ + + + + Y +L+ F +GG
Sbjct: 444 KGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTV----ETYNSLIHAFARGG 499
Query: 588 YFERVMEVIGYMKKQNMYVD 607
++ ++ M + + D
Sbjct: 500 LYKEAEAILSRMNESGLKRD 519
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 116/268 (43%), Gaps = 26/268 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF-LEAAHDILDDMEL 408
+IN Y ++G+ LL +K+E S T + VI+A + G E + +M
Sbjct: 175 IINAYGRNGQFHASLELLNGMKQERVSPSILTY-NTVINACARGGLDWEGLLGLFAEMRH 233
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G D TY +LL A + EAE + + M +S +V +++ + + F +
Sbjct: 234 EGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGK------ 287
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+++ + L++EM L I N + + + I +A+ ++R+MQ
Sbjct: 288 --------LNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAA 339
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIK---RNIESGVLAVSRDLYETLLLNFLQ 585
T+ L+ + Y D+ L+ ++K + ++G Y L+ F +
Sbjct: 340 GCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGT-------YNILIQVFGE 392
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
GGYF+ V+ + M ++N+ + Y+
Sbjct: 393 GGYFKEVVTLFHDMAEENVEPNMQTYEG 420
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 112/271 (41%), Gaps = 30/271 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I L + G L+ ++ D+M G +Y +++ AY + F + LL M++
Sbjct: 140 MITLLGREGLLDKCREVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQ-- 197
Query: 446 LVQNLSCEMVVSERFSEVADKSA-SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
+ +S ++ ++ V + A D L+ L EMR E + N+
Sbjct: 198 --ERVSPSILT---YNTVINACARGGLDWEGLL-------GLFAEMRHEGIQPDVITYNT 245
Query: 505 SIYFFCKGKMIGD-ALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ C + +GD A ++R M E I P + T+ YLV L ++ ++ R
Sbjct: 246 -LLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVS----ELLRE 300
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK---SEFLKHHK 620
+E G Y LL + + G + M V M+ + Y + + KH +
Sbjct: 301 MECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGR 360
Query: 621 H-----LYRRLKVSNARTEAQSKRLVNVQAF 646
+ L+ +KVSN +A + ++ +Q F
Sbjct: 361 YDDVRDLFLEMKVSNTDPDAGTYNIL-IQVF 390
>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
Length = 669
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 113/264 (42%), Gaps = 30/264 (11%)
Query: 356 KHGKNSELSWLLL------SIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++G+ ELS L+ I+ ++++F S +I+ + E A + M+
Sbjct: 154 RNGRQLELSEKLVEEMTGRGIQPDNYTF------STLINCAKRCRQPEEALKWFERMKSE 207
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D TY S++ Y +V EA L ++++ N + V + +A+ A
Sbjct: 208 GIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSV----NWKLDTVT---YGAIANVYAR 260
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D S+M L+QEMR+ + +N+ + K + A K++ M+
Sbjct: 261 AGDYQSIM-------QLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSG 313
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
+ PT T LV ++ + Y ++ +K +AV Y +L+ ++GG
Sbjct: 314 VSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAV----YNSLMKACVEGGRV 369
Query: 590 ERVMEVIGYMKKQNMYVDKLMYKS 613
E+ +++ MK+ D L Y++
Sbjct: 370 EQAEDILKEMKRAGCNPDHLTYRT 393
>gi|357437447|ref|XP_003588999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478047|gb|AES59250.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 458
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 25/217 (11%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
LING K G ++ + LL E + + + VID + + F+ A D+ +M
Sbjct: 144 GTLINGLCKVGGDTRAALQLLRQAFEP----DVVMYTTVIDNMCKDTFVNDAFDLYYEMV 199
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA--- 464
+G + TY +L+ + V EA L K+M + N+ + + F +
Sbjct: 200 ASGISPNVVTYTALIDGFCVVGKLEEALGLFKKMISENINPNVYTFNGLVDAFCKEGKIE 259
Query: 465 ------------DKSASFTDTSSLMDKSDL------AESLIQEMREEAALSTIYKLNSSI 506
D + SSLM+ L A+S+ + M E + N I
Sbjct: 260 EAKNVLNTMMEKDLKSDVVAYSSLMNGYCLVNEVFKAQSIFKTMAERELSYDVRSYNIMI 319
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
FCK KM+ +A+K++ M +I P V T++ L+ G
Sbjct: 320 NEFCKMKMVDEAIKLFEEMPLKQIFPDVVTYHTLIDG 356
>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g02150
gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 109/249 (43%), Gaps = 25/249 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID + + G +EAA + ++M+ G D+ TY S++ + KV + ++M+ C
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327
Query: 446 L---------VQNLSCEM----VVSERFSEVADKS--ASFTDTSSLMD---KSDLAESLI 487
+ N C+ + E + E+ + S+L+D K + + I
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAI 387
Query: 488 Q---EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ +MR + Y S I CK + DA ++ M ++ + V T+ L+ G
Sbjct: 388 KFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGL 447
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
E ++ L+G + +GV+ + Y L+ F++ +R +E++ +K + +
Sbjct: 448 CDAERMKEAEELFGKMD---TAGVIP-NLASYNALIHGFVKAKNMDRALELLNELKGRGI 503
Query: 605 YVDKLMYKS 613
D L+Y +
Sbjct: 504 KPDLLLYGT 512
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 97/474 (20%), Positives = 187/474 (39%), Gaps = 78/474 (16%)
Query: 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA---HSII----ILAQIHEMNC 226
+P +N+++ + G + + E M G+V D +S+I + ++ + C
Sbjct: 259 RPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVC 318
Query: 227 QRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNP 286
+E+K C D ++ Y +L++ KF G+L + + YRE
Sbjct: 319 FFEEMKDMCCEPDVIT----------YNALINCFCKF------GKLPIGLEFYRE----- 357
Query: 287 KLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRA 346
++ + KP ++S + + + K+ +++ K + + R G L+ +
Sbjct: 358 -MKGNGLKPNVVSYST-----------LVDAFCKEGMMQQAIKFYVDMRRVG-LVPNEYT 404
Query: 347 MAKLINGYKKHGKNSE---LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
LI+ K G S+ L +L + E + + L ID L ++ A ++
Sbjct: 405 YTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTAL----IDGLCDAERMKEAEELF 460
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS----------------CLV 447
M+ AG + +Y +L+ + K K A LL +++ C +
Sbjct: 461 GKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSL 520
Query: 448 QNLSCEMVVSERFSEVADKSASFTDTSSLMD----KSDLAESL--IQEMREEAALSTIYK 501
+ + VV E K+ S T+ LMD + E L + EM+E T+
Sbjct: 521 EKIEAAKVVMNEMKECGIKANSLIYTT-LMDAYFKSGNPTEGLHLLDEMKELDIEVTVVT 579
Query: 502 LNSSIYFFCKGKMIGDALKIYRRM-QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
I CK K++ A+ + R+ + ++ F ++ G T L+
Sbjct: 580 FCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLF--- 636
Query: 561 KRNIESGVLAVSRDLYETLL-LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++ ++ G L R Y +L+ NF QG E + + M + M +D L Y S
Sbjct: 637 EQMVQKG-LVPDRTAYTSLMDGNFKQGNVLE-ALALRDKMAEIGMKLDLLAYTS 688
>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
Length = 1107
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 109/249 (43%), Gaps = 25/249 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID + + G +EAA + ++M+ G D+ TY S++ + KV + ++M+ C
Sbjct: 136 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 195
Query: 446 L---------VQNLSCEM----VVSERFSEVADKS--ASFTDTSSLMD---KSDLAESLI 487
+ N C+ + E + E+ + S+L+D K + + I
Sbjct: 196 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAI 255
Query: 488 Q---EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ +MR + Y S I CK + DA ++ M ++ + V T+ L+ G
Sbjct: 256 KFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGL 315
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
E ++ L+G + +GV+ + Y L+ F++ +R +E++ +K + +
Sbjct: 316 CDAERMKEAEELFGKMD---TAGVIP-NLASYNALIHGFVKAKNMDRALELLNELKGRGI 371
Query: 605 YVDKLMYKS 613
D L+Y +
Sbjct: 372 KPDLLLYGT 380
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 101/228 (44%), Gaps = 18/228 (7%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S ++DA + G ++ A DM G + TY SL+ A K+ +A L +M +
Sbjct: 239 STLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQ 298
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ N VV+ ++ + D D + + AE L +M + + N
Sbjct: 299 VGVEWN-----VVT--YTALID---GLCDAERMKE----AEELFGKMDTAGVIPNLASYN 344
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ I+ F K K + AL++ ++ I+P + + ++G SLE ++ ++K
Sbjct: 345 ALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMK-- 402
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
E G+ A S +Y TL+ + + G + ++ MK+ ++ V + +
Sbjct: 403 -ECGIKANSL-IYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTF 448
Score = 45.8 bits (107), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 97/474 (20%), Positives = 187/474 (39%), Gaps = 78/474 (16%)
Query: 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA---HSII----ILAQIHEMNC 226
+P +N+++ + G + + E M G+V D +S+I + ++ + C
Sbjct: 127 RPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVC 186
Query: 227 QRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNP 286
+E+K C D ++ Y +L++ KF G+L + + YRE
Sbjct: 187 FFEEMKDMCCEPDVIT----------YNALINCFCKF------GKLPIGLEFYRE----- 225
Query: 287 KLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRA 346
++ + KP ++S + + + K+ +++ K + + R G L+ +
Sbjct: 226 -MKGNGLKPNVVSYST-----------LVDAFCKEGMMQQAIKFYVDMRRVG-LVPNEYT 272
Query: 347 MAKLINGYKKHGKNSE---LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
LI+ K G S+ L +L + E + + L ID L ++ A ++
Sbjct: 273 YTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTAL----IDGLCDAERMKEAEELF 328
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS----------------CLV 447
M+ AG + +Y +L+ + K K A LL +++ C +
Sbjct: 329 GKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSL 388
Query: 448 QNLSCEMVVSERFSEVADKSASFTDTSSLMD----KSDLAESL--IQEMREEAALSTIYK 501
+ + VV E K+ S T+ LMD + E L + EM+E T+
Sbjct: 389 EKIEAAKVVMNEMKECGIKANSLIYTT-LMDAYFKSGNPTEGLHLLDEMKELDIEVTVVT 447
Query: 502 LNSSIYFFCKGKMIGDALKIYRRM-QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
I CK K++ A+ + R+ + ++ F ++ G T L+
Sbjct: 448 FCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLF--- 504
Query: 561 KRNIESGVLAVSRDLYETLL-LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++ ++ G L R Y +L+ NF QG E + + M + M +D L Y S
Sbjct: 505 EQMVQKG-LVPDRTAYTSLMDGNFKQGNVLE-ALALRDKMAEIGMKLDLLAYTS 556
>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
[Vitis vinifera]
Length = 2037
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 100/235 (42%), Gaps = 19/235 (8%)
Query: 366 LLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY 425
LL ++KE S E T + +I+ ++ G + A + ++M + TY +L+ +
Sbjct: 1076 LLKKMRKEMISPNEVTY-NTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGH 1134
Query: 426 YKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES 485
V F EA LL M + L R +EV + + +K +LA+
Sbjct: 1135 CHVGDFEEALRLLDHMEAAGL------------RLNEVT--YGTLLNGLCKHEKFELAKR 1180
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
L++ MR + I CK M+ +A+++ M + + P V T+ L+ G
Sbjct: 1181 LLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFC 1240
Query: 546 SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
+ + + I R SG L +++ +Y TL+ NF Q G M+V M
Sbjct: 1241 RVGNIKSAKEI---ICRMYRSG-LVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMN 1291
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 30/259 (11%)
Query: 359 KNSELSWLLLSIKKEHHSFGESTLCSDV------IDALIQLGFLEAAHDILDDMELAGHP 412
K +EL W L + +C +V I+ L G L+ A ++L ME G
Sbjct: 963 KRTELVWSLF------REMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFV 1016
Query: 413 MDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTD 472
TY +LL Y K ++ A L+ M + + + ++ F D
Sbjct: 1017 PTIVTYNTLLNWYCKKGRYKAAIELIDYM----ICKGIEADVCTYN----------VFID 1062
Query: 473 TSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP 532
+S A L+++MR+E N+ I F K IG A +++ M + + P
Sbjct: 1063 NLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSP 1122
Query: 533 TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
T+ L+ GH + + + L ++E+ L ++ Y TLL + FE
Sbjct: 1123 NCVTYNALIGGHCHVGDFEEALRLL----DHMEAAGLRLNEVTYGTLLNGLCKHEKFELA 1178
Query: 593 MEVIGYMKKQNMYVDKLMY 611
++ M+ +M V + Y
Sbjct: 1179 KRLLERMRVNDMVVGHIAY 1197
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 103/266 (38%), Gaps = 19/266 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
L+NG KH K LL ++ G + +ID L + G L+ A ++ +M
Sbjct: 1163 GTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAY-TVLIDGLCKNGMLDEAVQLVGNMY 1221
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY SL+ + +V + A+ ++ +M +S LV N + F + + +
Sbjct: 1222 KDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVT 1281
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
A + M + + N + C+ +G+A K M
Sbjct: 1282 E--------------AMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSR 1327
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
+ + P T+ ++ G+ S+ + + D+ I+ G S Y +LL +GG
Sbjct: 1328 IGLVPNSITYDCIINGYGSIGDPLNAFSFFDDM---IKCGQHP-SFFTYGSLLKGLCKGG 1383
Query: 588 YFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + + VD +MY +
Sbjct: 1384 NLVEAKKFLNRLHYIPGAVDSVMYNT 1409
>gi|255661218|gb|ACU25778.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
Length = 426
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 128/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G+ + LSWL +E G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGRFDDALSWL--QKMEEDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y S++ + K K+F+EA +L+ +MR + ++ N L V +++F
Sbjct: 71 KRSGITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMD---------------KSDLAESLIQEMREEAALSTIYKLNSS 505
E A + +D + A+ L R+ + N+
Sbjct: 131 IEALSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNTIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQVLYQTMIITYER 301
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 105/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKS------CLVQNL----------SCEMVVS 457
D TY +L+T + K F +A + L++M + L NL S + +
Sbjct: 8 DRYTYSTLITHFGKEGRFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 458 ERF--SEVADKSASFTDTSSLMDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
R S + ++ ++ K+ L A SLI EMR + ++ + + +
Sbjct: 68 SRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL ++ M+E++ + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y + + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Vitis vinifera]
Length = 835
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 114/267 (42%), Gaps = 25/267 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEH---HSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
++NG K GK E + +++ + F +TL ID+L + G + A + M
Sbjct: 128 IMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATL----IDSLFKEGNVAEAFVLQGRM 183
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ G D Y +L+ +K M AE + + + + LV N +S + D
Sbjct: 184 VVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVT-------YSALIDG 236
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
D + E L+QEM E+ + +S + + K ++ +A+ + R+M
Sbjct: 237 HCKLGDVNK-------GELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMV 289
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
+ I P V + L+ G+ + R I + D+ + ++S L + + ++ + N +
Sbjct: 290 QRNILPNVFVYGTLIDGYFKADQ-RGIAL---DLFKEMKSRGLEENNFVIDSFVNNLKRS 345
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKS 613
G E E+ M + + D++ Y S
Sbjct: 346 GRMEEADELFKDMMSRGLLPDRVNYTS 372
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 27/218 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDM 406
+IN Y K G LL E S+G S C+ ++ L G +E D+L+DM
Sbjct: 442 MINAYCKEGNLGNALKLL----NEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDM 497
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALL---KQMRKSCLVQNLSCEMVVSERFSEV 463
+ G TT+K++L A K R A+ +L Q+ + +LS + F +
Sbjct: 498 LVMGFHPTPTTHKAVLDASSKS---RRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRL 554
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
++ ++ L + ++M + L+ I N+ I+ +C + A ++
Sbjct: 555 G-----------MIRRATL---VFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHS 600
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
+M + P VET+ L+ G S+ + ++ L +K
Sbjct: 601 QMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMK 638
>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
gi|219887141|gb|ACL53945.1| unknown [Zea mays]
Length = 522
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 25/251 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LING K ++ L++ ++K T + +IDA G LE +L DM+
Sbjct: 232 LINGLCKLEMVTKAEDLVMEMEKSGVDPSVETF-NTLIDAYGTAGQLEKCFTVLSDMQQK 290
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D ++ S++ A+ K EA A+L M + N + + + E D +
Sbjct: 291 GIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQA 350
Query: 470 F--------------TDTSSLMDKS-------DLAESLIQEMREEAALSTIYKLNSSIYF 508
F T +L+ K D AE LI +R + + N+ I
Sbjct: 351 FLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISA 410
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIE-- 565
C AL++ + M + IRPT+ T++ LV +S D+ L+ + +N+E
Sbjct: 411 CCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPS 470
Query: 566 SGVLAVSRDLY 576
S + + D Y
Sbjct: 471 SSIYGIMVDAY 481
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 49/259 (18%), Positives = 100/259 (38%), Gaps = 28/259 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID ++ G LEA + D M G + TY LL+ + E L+ +M
Sbjct: 57 MIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHS 116
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL---------------------AE 484
+ + ++ + + + + + + K + AE
Sbjct: 117 MFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAE 176
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+++ + + T N+ I +C+ + + A I+ +M+ IRP T+ L+ G
Sbjct: 177 QVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGL 236
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
LEM D+ +E + S + + TL+ + G E+ V+ M+++ +
Sbjct: 237 CKLEMVTKAE----DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGI 292
Query: 605 YVDKLMYKS---EFLKHHK 620
D + + S F K+ K
Sbjct: 293 KSDVISFGSVVKAFCKNGK 311
>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Vitis vinifera]
Length = 665
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 103/247 (41%), Gaps = 12/247 (4%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+GY K G N E + + S E S +ID + G +EAA + +M +
Sbjct: 409 LIDGYCKEG-NMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIK 467
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN---LSCEMVVSERFSEVADK 466
G D Y +L+ ++K +EA L K+M+++ L N LSC + + ++D
Sbjct: 468 GLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDA 527
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
F + +D S E+ + I C I A K + M+
Sbjct: 528 IKLFLAKTG----TDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMR 583
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
+RP V T ++ GH RD+ +L DI ++ G++ S +Y L + +
Sbjct: 584 CSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADI---LKMGIIPNS-SVYRVLAKGYEES 639
Query: 587 GYFERVM 593
GY + +
Sbjct: 640 GYLKSAL 646
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 34/171 (19%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ V+D L++ G + + DM G + TY +L+ + F +A L +M
Sbjct: 161 CNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMI 220
Query: 443 K----------SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE 492
+ + L++ L E +SE AES+ + MR
Sbjct: 221 EKKIFPTVVIYTILIRGLCGESRISE------------------------AESMFRTMRN 256
Query: 493 EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
L +Y N+ + +CK + AL++Y+ M + P V TF L+ G
Sbjct: 257 SGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDG 307
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 14/159 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID L + + +A L DM G + Y L+ Y K EA +L ++ K
Sbjct: 304 LIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE 363
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
++ ++ ++ + V D+ + A+ L+QEM+++ L N+
Sbjct: 364 ILPDVFTYSILIKGLCGV--------------DRMEEADGLLQEMKKKGFLPNAVTYNTL 409
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
I +CK + A+++ +M E I P + TF L+ G+
Sbjct: 410 IDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGY 448
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 52/231 (22%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ VI+ L ++G L A D++DDM++ G + TY +L+ Y KM R + +M K
Sbjct: 234 NTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGY--CKMGR-----VGKMYK 286
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
A+++++EM E N
Sbjct: 287 ---------------------------------------ADAILKEMVENKVSPNSVTFN 307
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKR 562
I FCK + + ALK++ MQ ++PTV T+ LV G + + +L + +
Sbjct: 308 VLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSS 367
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
N++ V+ Y L+ + + E E+ + KQ + + + + +
Sbjct: 368 NLKPNVIT-----YNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNT 413
>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 577
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 120/276 (43%), Gaps = 26/276 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++NG K G + +L++ LL+ + + S VID+L + + A ++ +ME
Sbjct: 231 VVNGLCKRG-DIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 289
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC------------EMVVS 457
G + TY SL++ + + +A LL M + + N+ ++V +
Sbjct: 290 GVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEA 349
Query: 458 ER-FSEVADKS--------ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
E+ + E+ +S +S + + D+ D A+ + + M + + N+ I
Sbjct: 350 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLING 409
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
FCK K I + ++++R M + + T+ L++G RD K+ + GV
Sbjct: 410 FCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQA---RDCDNAQMVFKQMVSDGV 466
Query: 569 LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
+ Y TLL + G E+ M V Y+++ M
Sbjct: 467 HP-NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 501
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 20/213 (9%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
++D M G+ D+ T+ +L+ + EA AL+ +M + NL VV
Sbjct: 177 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLC 236
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
+ D DLA +L+ +M + + ++ I CK + DAL +
Sbjct: 237 KRGD--------------IDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNL 282
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLL 580
+ M+ +RP V T+ L+ + E + D + L D I+R I V+ + L+
Sbjct: 283 FTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVT-----FNALI 337
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
F++ G ++ M K+++ D Y S
Sbjct: 338 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 370
Score = 42.4 bits (98), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477
+ LL+A K+K F +L ++M++ + NL ++ F + S
Sbjct: 88 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQIS---------- 137
Query: 478 DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
LA +L+ +M + +I L+S + +C GK I DA+ + +M EM RP TF
Sbjct: 138 ----LALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITF 193
Query: 538 YYLVYG 543
L++G
Sbjct: 194 TTLIHG 199
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 14/128 (10%)
Query: 416 TTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSS 475
TY +L+ + K K E L ++M + LV N + F + D
Sbjct: 401 VTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARD---------- 450
Query: 476 LMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVE 535
D A+ + ++M + I N+ + CK + A+ ++ +Q K+ PT+
Sbjct: 451 ----CDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIY 506
Query: 536 TFYYLVYG 543
T+ ++ G
Sbjct: 507 TYNIMIEG 514
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 118/302 (39%), Gaps = 62/302 (20%)
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
LS +E F + + +I+A + G LE A +++D M G TY +++
Sbjct: 380 FLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLC 439
Query: 427 KVKMFREAEALLKQMRKSCLVQNLSC------------EMVVSER-FSEVADKS-----A 468
K + A+ +L +M K + + + M+ +ER F E+ +
Sbjct: 440 KTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLV 499
Query: 469 SFTDTSSLMDKSDLAESLIQ--------------------------------------EM 490
SF+ L+ K+ + ++ EM
Sbjct: 500 SFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEM 559
Query: 491 REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS-SLEM 549
E+ + N+ + CK KM+ +A +++ M E + P TF L+ G+ M
Sbjct: 560 LEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNM 619
Query: 550 YRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKL 609
+ +T+ I+RN++ V+ Y TL+ F +G E+V E+ M + +Y + +
Sbjct: 620 NKAVTLFEMMIQRNLKPDVVT-----YNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHI 674
Query: 610 MY 611
Y
Sbjct: 675 SY 676
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/229 (18%), Positives = 95/229 (41%), Gaps = 20/229 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I + G + A + D+M G +D TY ++L K KM EA+ L +M +
Sbjct: 539 LIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERG 598
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ + + + + + M+K A +L + M + + N+
Sbjct: 599 VFPDFYTFTTLINGYXKDGN-----------MNK---AVTLFEMMIQRNLKPDVVTYNTL 644
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNI 564
I FCKG + +++ M +I P ++ L+ G+ ++ + LW + +++
Sbjct: 645 IDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGF 704
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ ++ + T++ + + G + E + M + + D + Y +
Sbjct: 705 EATIITCN-----TIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNT 748
>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
Length = 425
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 124/280 (44%), Gaps = 34/280 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMEL 408
++NG K G +++L++ LL+ K E L + +ID L + ++ A ++ +ME
Sbjct: 22 VVNGLCKRG-DTDLAFNLLN-KMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 79
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM--RK--------SCLVQNLSCE--MVV 456
G + TY SL++ + +A LL M RK S L+ E +V
Sbjct: 80 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 139
Query: 457 SER-FSEVADKS--ASFTDTSSLM------DKSDLAESLIQEMREEAALSTIYKLNSSIY 507
+E+ + E+ +S S SSL+ D+ D A+ + + M + + N+ I
Sbjct: 140 AEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIK 199
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEMYRDITILWGDIKRNI 564
FCK K + + ++++R M + + T+ L+ G +M ++I K +
Sbjct: 200 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI------FKEMV 253
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
GV + Y TLL + G E+ M V Y+++ M
Sbjct: 254 SDGV-PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 292
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 81/201 (40%), Gaps = 20/201 (9%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+ + K K E + ++M + LV N ++ + + D
Sbjct: 190 DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD-------- 241
Query: 474 SSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT 533
D+A+ + +EM + I N+ + CK + A+ ++ +Q K+ PT
Sbjct: 242 ------CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 295
Query: 534 VETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
+ T+ ++ G D L+ ++ + ++ V+A Y T++ F + G E
Sbjct: 296 IYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVA-----YNTMISGFCRKGSKEEA 350
Query: 593 MEVIGYMKKQNMYVDKLMYKS 613
+ MK+ + Y +
Sbjct: 351 DALFKEMKEDGTLPNSGCYNT 371
>gi|410110095|gb|AFV61127.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
montevidensis]
Length = 418
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 124/268 (46%), Gaps = 23/268 (8%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 3 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ +G D Y +++ + K K+FREA +L+ +M+ + ++ N + + + E
Sbjct: 61 KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVE---- 116
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ F + A S+ EMRE L + N I + + M +A K++ M+
Sbjct: 117 NKKFLE----------ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 166
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQ 585
+M I P V ++ L+ + E++ + L+ ++R NIE V+ Y ++++ + +
Sbjct: 167 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YNSMMMIYGK 221
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ +I M+ + + + + Y +
Sbjct: 222 TLEHEKANNLIQEMQSRGIEPNSITYST 249
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 104/244 (42%), Gaps = 28/244 (11%)
Query: 417 TYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSL 476
TY +L+T + K +F A + L++M + + +L + E ++ D S + + S L
Sbjct: 1 TYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60
Query: 477 ------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
K+ L A SLI EM+ + ++ + + + K
Sbjct: 61 KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKKF 120
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAVSRD 574
+AL ++ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 121 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS---- 176
Query: 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTE 634
Y TLL + F + + M+++N+ + + Y S + + K L K +N E
Sbjct: 177 -YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNLIQE 234
Query: 635 AQSK 638
QS+
Sbjct: 235 MQSR 238
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 133/316 (42%), Gaps = 38/316 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+ING K+G N+ ++ + +++ + +ID+L + + A + L +M
Sbjct: 207 VINGLCKNG-NTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDR 265
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK----------SCLVQNLSCE-MV--- 455
G P D TY ++L + + EA L K+M + LV L E MV
Sbjct: 266 GIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEA 325
Query: 456 --VSERFSEVADKSASFT-----DTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
VSE +E + ++T D L ++ D A ++ M + + N I
Sbjct: 326 RCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILING 385
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
+CK K + +A ++ M E + P T+ L+ G + R+ L+ K SG+
Sbjct: 386 YCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLF---KEMCSSGL 442
Query: 569 LAVSRDL--YETLLLNFLQGGYFERVMEVIGYMK----KQNMYVDKLMYKSEF----LKH 618
L DL Y LL F + G+ + ++++ M K N+ + ++ + F L+
Sbjct: 443 LP---DLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEV 499
Query: 619 HKHLYRRLKVSNARTE 634
K L+ +L R +
Sbjct: 500 AKELFSKLSADGIRPD 515
>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Glycine max]
Length = 852
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 105/231 (45%), Gaps = 18/231 (7%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID ++G L A + ++M+ AG D TY SL+ + K + +A L M++
Sbjct: 290 NSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQ 349
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
L N VV+ +S + D +F L++ A +M +
Sbjct: 350 RGLQPN-----VVT--YSTLID---AFCKAGMLLE----ANKFFVDMIRVGLQPNEFTYT 395
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
S I CK + +A K+ MQ+ + + T+ L+ G R+ L+G +
Sbjct: 396 SLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGAL--- 452
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSE 614
+++G +++ +Y +L +++ E+ M+++ M K+N+ D L+Y ++
Sbjct: 453 LKAG-WTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTK 502
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 105/239 (43%), Gaps = 24/239 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++D L + G + A ++ + AG ++ Y SL Y K KM +A +L++M K
Sbjct: 432 LLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNK-- 489
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL--IQEMREEAALSTIYKLN 503
+NL ++++ T L ++++ +S+ I+EM + + Y
Sbjct: 490 --KNLKPDLLLYG------------TKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYT 535
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ I + K +A+ + + MQ++ I+ TV T+ L+ G + + + + + RN
Sbjct: 536 TLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRN 595
Query: 564 -IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKH 621
++ ++ +Y L+ + E + M + + DKL+Y S + KH
Sbjct: 596 GLQPNIM-----IYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKH 649
>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
[Vitis vinifera]
Length = 644
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 117/268 (43%), Gaps = 32/268 (11%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
I+GY G N + W LL K + + VID+L ++ L+ A IL M
Sbjct: 227 FISGYCSQG-NIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQM 285
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G +DS + S++ Y KV EA +L+ V NLS + V F S
Sbjct: 286 GVFLDSVSVSSVVDGYCKVGKSEEAMDVLE-------VFNLSPNIFVFNSFI-----SKL 333
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
TD + L A + Q+M E + + + + +CK K I +ALK +M +
Sbjct: 334 CTDGNMLK-----AAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRG 388
Query: 530 IRPTVETFYYLVYG---HSSLEMYRDITILWGDIKRNIESGVL--AVSRDLYETLLLNFL 584
IRP+V T+ L+ ++EM + +R I G++ VS Y TL+ +
Sbjct: 389 IRPSVATYTLLIDSCCKPGNMEMAEYL------FQRMITEGLVPDVVS---YNTLMNGYG 439
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYK 612
+ G+ ++ E++ M+ + D + Y
Sbjct: 440 KKGHLQKAFELLSMMRSAGVSPDLVTYN 467
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 17/196 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+NGY K G + + ++ LLS+ + + + +I LI+ G + A DILD++
Sbjct: 434 LMNGYGKKG-HLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRR 492
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVSERFSEVADKSA 468
G D T+ +++ + F EA L M + L + ++C +++
Sbjct: 493 GFSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLN----------- 541
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ T + + A L +M + + + NS I+ FC I DA + M E
Sbjct: 542 GYCRTRCMAE----ANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEH 597
Query: 529 KIRPTVETFYYLVYGH 544
I P T + LV G+
Sbjct: 598 GIMPNNITHHALVLGY 613
>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
Length = 453
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/392 (17%), Positives = 161/392 (41%), Gaps = 61/392 (15%)
Query: 162 LSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQI 221
+S + NG +KPD+++FN +++A G+ + + M ++G + L +
Sbjct: 71 ISKVEENG---MKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKG 127
Query: 222 HEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYRE 281
+ + +E K ++ L Q+ Y L+ ++++ A ++
Sbjct: 128 YGNAGKTEEALKL---LEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVY------- 177
Query: 282 PLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVL-FRNGKL 340
K+ +P ++ + + EK ++ E E++L N ++
Sbjct: 178 -----KMVASGMQPDAVTYNT----------LARAYAEKGETIRAE---EMILEMLNRRV 219
Query: 341 LHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD--VIDALIQLGFL-- 396
+ R + ++NGY K G + S + +K E + + V ++LI+ GFL
Sbjct: 220 TPNERTCSIIVNGYCKEGNMVDASRFVFRMK-------ELGVLPNLFVFNSLIK-GFLDT 271
Query: 397 ---EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
E ++L ME G D T+ +++ A+ + + + M K+ + ++
Sbjct: 272 MDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAF 331
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
++++ + + + AES++ MR+ + + I +C
Sbjct: 332 SILAKGYVRAGE--------------PEKAESILTSMRKYGVHPNVVICTTVISGWCSAG 377
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
+ A+K+Y +M E+ + P ++T+ L++G+
Sbjct: 378 KMEHAMKVYEKMCEIGVSPNLKTYETLIWGYG 409
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 96/215 (44%), Gaps = 22/215 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ LI G AH I + + GH TY +L+ A + K+F+ L+ ++ +
Sbjct: 17 TKLMNVLIGKGKPREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEE 76
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ + + S F+ + + +F+++ ++ + A L ++M+E T N
Sbjct: 77 NGMKPD-------SILFNSIIN---AFSESGNMKE----AMKLFRKMKESGCKPTTSTFN 122
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ I + +ALK+ +Q+ ++P T+ LV + E + W + +
Sbjct: 123 TLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEA---WNMVYKM 179
Query: 564 IESGVL--AVSRDLYETLLLNFLQGGYFERVMEVI 596
+ SG+ AV+ Y TL + + G R E+I
Sbjct: 180 VASGMQPDAVT---YNTLARAYAEKGETIRAEEMI 211
>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
[Oryza sativa Japonica Group]
gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 793
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 102/222 (45%), Gaps = 22/222 (9%)
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHS---FGESTLCSDVIDAL 390
+ +NG ++++ + L+ Y K G + + SI+KE + F + ++ A
Sbjct: 522 MLKNG-FKPNDQSYSLLLQCYAKGGNAAGIE----SIEKEVYVGTIFPSWVILRTLVIAN 576
Query: 391 IQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
+ LE +++ G+ D + S+L Y K ++ +A + +++S L
Sbjct: 577 FKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQS----GL 632
Query: 451 SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFC 510
S +++ ++ KS ++S AE ++++++ + N+ I FC
Sbjct: 633 SPDLITYNSLMDMYAKS----------NESWEAEKILKQLKSSQVKPDVVSYNTVINGFC 682
Query: 511 KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
K +I +A +I M + P V T++ LV G++SLEM+ +
Sbjct: 683 KQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNE 724
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 47/236 (19%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S VI A + G L+ A +D++ GH TY +LL + K + EA +LK+M
Sbjct: 255 STVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMED 314
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
S + V + ++ F + + +D M + L + N
Sbjct: 315 S----GCQPDAVTYNELAGTYARAGFFEEAAKCLDT----------MTSKGLLPNTFTYN 360
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG--------HSSLEMYRDIT- 554
+ + + + +AL ++ RM++ P V T Y L++G + LEM +++
Sbjct: 361 TVMTAYANVGRVDEALALFDRMKKNGYVPNVNT-YNLIFGMLGKKSRFTAMLEMLEEMSR 419
Query: 555 -------ILWGDI-----KRNIESGVLAV-----------SRDLYETLLLNFLQGG 587
+ W + KR +E V V SRD Y TL+ + + G
Sbjct: 420 SGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCG 475
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDM 406
L+ + K G +E L + KE G ++ +++ + GF E A LD M
Sbjct: 292 LLQVFGKAGNYTEA----LRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTM 347
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
G ++ TY +++TAY V EA AL +M+K+ V N++
Sbjct: 348 TSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVN 392
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 117/280 (41%), Gaps = 30/280 (10%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
++NG K G + +L+ LL ++ + + +ID L + ++ A D+ + ME
Sbjct: 225 GTVVNGLCKRG-DIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKME 283
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC------------EMV 455
G D TY SL++ + +A LL M + + N+ +++
Sbjct: 284 TKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLI 343
Query: 456 VSER-FSEVADKSA--------SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506
+E+ F E+ +S S + + D+ D A+ + M + L + N+ I
Sbjct: 344 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 403
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566
FCK K + + ++++R M + + T+ L+ G L D + K+ +
Sbjct: 404 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG---LFQAGDCDMAQKIFKKMVSD 460
Query: 567 GVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNM 604
G V D+ Y LL + G E+ + V Y++K M
Sbjct: 461 G---VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 497
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 92/225 (40%), Gaps = 28/225 (12%)
Query: 368 LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK 427
L I H+++ S +++ + L A +L M G+ D T SLL Y
Sbjct: 110 LGIPHNHYTY------SILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCH 163
Query: 428 VKMFREAEALLKQMRK----------SCLVQNLSCEMVVSERFSEV---------ADKSA 468
K EA AL+ QM + + L+ L SE + + D
Sbjct: 164 GKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFT 223
Query: 469 SFTDTSSLMDKSD--LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
T + L + D LA SL+++M + + + N+ I CK K + DA ++ +M+
Sbjct: 224 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKME 283
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLA 570
I+P V T+ L+ + + D + L D I+R I V+
Sbjct: 284 TKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVT 328
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 38/201 (18%), Positives = 78/201 (38%), Gaps = 20/201 (9%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+ + K K E L ++M + LV N + + + D
Sbjct: 395 DVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD-------- 446
Query: 474 SSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT 533
D+A+ + ++M + I + + CK + AL ++ +Q+ K+ P
Sbjct: 447 ------CDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPN 500
Query: 534 VETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
+ T+ ++ G D L+ + + ++ V+ +Y T++ F + G E
Sbjct: 501 IYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVI-----IYTTMISGFCRKGLKEEA 555
Query: 593 MEVIGYMKKQNMYVDKLMYKS 613
+ MK+ D Y +
Sbjct: 556 DALFREMKEDGTLPDSGCYNT 576
>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
Length = 882
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 114/267 (42%), Gaps = 25/267 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEH---HSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
++NG K GK E + +++ + F +TL ID+L + G + A + M
Sbjct: 128 IMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATL----IDSLFKEGNVAEAFVLQGRM 183
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ G D Y +L+ +K M AE + + + + LV N +S + D
Sbjct: 184 VVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVT-------YSALIDG 236
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
D + E L+QEM E+ + +S + + K ++ +A+ + R+M
Sbjct: 237 HCKLGDVNK-------GELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMV 289
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
+ I P V + L+ G+ + R I + D+ + ++S L + + ++ + N +
Sbjct: 290 QRNILPNVFVYGTLIDGYFKADQ-RGIAL---DLFKEMKSRGLEENNFVIDSFVNNLKRS 345
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKS 613
G E E+ M + + D++ Y S
Sbjct: 346 GRMEEADELFKDMMSRGLLPDRVNYTS 372
Score = 45.4 bits (106), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 27/218 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDM 406
+IN Y K G LL E S+G S C+ ++ L G +E D+L+DM
Sbjct: 442 MINAYCKEGNLGNALKLL----NEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDM 497
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALL---KQMRKSCLVQNLSCEMVVSERFSEV 463
+ G TT+K++L A K R A+ +L Q+ + +LS + F +
Sbjct: 498 LVMGFHPTPTTHKAVLDASSKS---RRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRL 554
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
++ ++ L + ++M + L+ I N+ I+ +C + A ++
Sbjct: 555 G-----------MIRRATL---VFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHS 600
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
+M + P VET+ L+ G S+ + ++ L +K
Sbjct: 601 QMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMK 638
>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
Length = 793
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 102/222 (45%), Gaps = 22/222 (9%)
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHS---FGESTLCSDVIDAL 390
+ +NG ++++ + L+ Y K G + + SI+KE + F + ++ A
Sbjct: 522 MLKNG-FKPNDQSYSLLLQCYAKGGNAAGIE----SIEKEVYVGTIFPSWVILRTLVIAN 576
Query: 391 IQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
+ LE +++ G+ D + S+L Y K ++ +A + +++S L
Sbjct: 577 FKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQS----GL 632
Query: 451 SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFC 510
S +++ ++ KS ++S AE ++++++ + N+ I FC
Sbjct: 633 SPDLITYNSLMDMYAKS----------NESWEAEKILKQLKSSQVKPDVVSYNTVINGFC 682
Query: 511 KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
K +I +A +I M + P V T++ LV G++SLEM+ +
Sbjct: 683 KQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNE 724
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 47/236 (19%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S VI A + G L+ A +D++ GH TY +LL + K + EA +LK+M
Sbjct: 255 STVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMED 314
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
S + V + ++ F + + +D M + L + N
Sbjct: 315 S----GCQPDAVTYNELAGTYARAGFFEEAAKCLDT----------MTSKGLLPNTFTYN 360
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG--------HSSLEMYRDIT- 554
+ + + + +AL ++ RM++ P V T Y L++G + LEM +++
Sbjct: 361 TVMTAYANVGRVDEALALFDRMKKNGYVPNVNT-YNLIFGMLGKKSRFTAMLEMLEEMSR 419
Query: 555 -------ILWGDI-----KRNIESGVLAV-----------SRDLYETLLLNFLQGG 587
+ W + KR +E V V SRD Y TL+ + + G
Sbjct: 420 SGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCG 475
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDM 406
L+ + K G +E L + KE G ++ +++ + GF E A LD M
Sbjct: 292 LLQVFGKAGNYTEA----LRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTM 347
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
G ++ TY +++TAY V EA AL +M+K+ V N++
Sbjct: 348 TSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVN 392
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 92/213 (43%), Gaps = 20/213 (9%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
++D M G+ D+ T+ +L+ + EA AL+ +M + NL VV
Sbjct: 139 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLC 198
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
+ D +DLA +L+ +M + + N+ I CK + + DAL +
Sbjct: 199 KRGD--------------TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNL 244
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLL 580
++ M+ IRP V T+ L+ S + D + L D I++ I ++ + L+
Sbjct: 245 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT-----FNALI 299
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
F++ G F ++ M K+++ D Y S
Sbjct: 300 DAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNS 332
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 122/294 (41%), Gaps = 44/294 (14%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++NG K G +++L+ LL+ + + + + +ID+L + ++ A ++ +ME
Sbjct: 193 VVNGLCKRG-DTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK 251
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC------------EMVVS 457
G + TY SL++ + +A LL M + + NL + V +
Sbjct: 252 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA 311
Query: 458 ERFSEVADKSA---------SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
E+ + K + S + + D+ D A+ + + M + + N+ I
Sbjct: 312 EKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKG 371
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-------IK 561
FCK K + D +++R M + T+ L+ G ++ D GD K
Sbjct: 372 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG-----LFHD-----GDCDNAQKVFK 421
Query: 562 RNIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + G V D+ Y LL G E+ +EV YM+K + +D +Y +
Sbjct: 422 QMVSDG---VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 472
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 411 HPMDSTT-YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
P+ S + LL+A K+K F +L ++M++ +V L ++ F + S
Sbjct: 42 RPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQIS-- 99
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
LA +L+ +M + +I L+S + +C GK I DA+ + +M EM
Sbjct: 100 ------------LALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 147
Query: 530 IRPTVETFYYLVYG 543
RP TF L++G
Sbjct: 148 YRPDTITFTTLIHG 161
>gi|449458793|ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g19280-like [Cucumis sativus]
gi|449503522|ref|XP_004162044.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g19280-like [Cucumis sativus]
Length = 532
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 17/195 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L++ Y K G + ++ LL + + + + + +I+ L+ GFL+ A DILD++
Sbjct: 320 LMDAYGKKGYMHK-AFKLLDMMRSTNVTPDVVTYNTLINGLVMRGFLQEAKDILDELIRR 378
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVSERFSEVADKSA 468
G +D TY +++ Y F EA L M ++C+ + ++C ++S E
Sbjct: 379 GFSVDVVTYTNIIHGYSTRGNFEEAFLLWYHMAENCVTPDVVTCSALLSGYCRE------ 432
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ D A +L +M + + N+ I+ FC + + + ++M E
Sbjct: 433 ---------KRMDEANALFCKMLDIGLKPDLILYNTLIHGFCSVGNVDEGCNLVKKMIES 483
Query: 529 KIRPTVETFYYLVYG 543
I P T LV G
Sbjct: 484 SIIPNNVTHRALVLG 498
>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g11690-like [Glycine max]
Length = 556
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 108/246 (43%), Gaps = 20/246 (8%)
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
LL++ +E + + +ID + G + A ++ M+ G + TY L+ ++
Sbjct: 180 LLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFF 239
Query: 427 KVKMFREAEALLKQMRKSCLVQN-LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES 485
K + RE + + M +S +V N + ++SE ++ ++DK A
Sbjct: 240 KQGLQREGFQMYENMNRSGIVPNAYAYNCLISEYCND------------GMVDK---AFK 284
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
+ EMRE+ + N I C+GK G+A+K+ ++ ++ + P + T+ L+ G
Sbjct: 285 VFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFC 344
Query: 546 SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMY 605
+ L+ +K + S L Y TL+ + + ++++ M+++ +
Sbjct: 345 DVGKMDTAVRLFNQLKSSGLSPTLVT----YNTLIAGYSKVENLAGALDLVKEMEERCIA 400
Query: 606 VDKLMY 611
K+ Y
Sbjct: 401 RSKVTY 406
Score = 45.4 bits (106), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 75/161 (46%), Gaps = 18/161 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+ +G ++ A + + ++ +G TY +L+ Y KV+ A L+K+M + C
Sbjct: 339 LINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC 398
Query: 446 LVQNLSCEMVVSERFSEV--ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ ++ ++ + F+ + DK+ + SLM+KS L +Y +
Sbjct: 399 IARSKVTYTILIDAFARLNYTDKAC---EMHSLMEKSGLVPD-------------VYTYS 442
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
I+ C + +A K ++ + EM ++P + +++G+
Sbjct: 443 VLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGY 483
>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
Length = 432
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 25/232 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAG--HPMDSTTYKSLLTAYYKVKMFREAEALLKQM 441
+ +I+ L +LG ++AA D+ M AG P ++ TY +L+ K A A++ +
Sbjct: 100 TTLINGLCKLGRVDAAFDLFRKMVAAGGCRP-NAFTYNALVDGLCKQDRLDAARAVITEA 158
Query: 442 RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYK 501
RK ++ + ++V +A F + + D A + +M EE + T+
Sbjct: 159 RK----RDFAPDVVTYNTL-----MAALFQ-----LGRVDEALATFTQMTEEGYVPTLVS 204
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
N+ I C+ + + DAL+++ M + P + T+ ++ G + + L +
Sbjct: 205 FNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQL---LD 261
Query: 562 RNIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
R + G DL Y L+L F G + + ++ M Q D + Y
Sbjct: 262 RMVSEG---CRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTY 310
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 17/165 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S VID L + L+ A +LD M G D Y L+ + A LL++M
Sbjct: 241 SVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVS 300
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ ++ VV ++ +V + D A + +E+ + +
Sbjct: 301 QGCIPDVVTYTVVIDKLCKVG--------------RVDDAHEIFRELVANKCSPNVVTYS 346
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548
+ I +C+ + + K+ M+EM RP V T+ +++G S ++
Sbjct: 347 ALIGGYCRASRVDEGGKV---MREMACRPNVVTYNTMIWGLSMVD 388
>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
Length = 716
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 32/237 (13%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-R 442
+ VID + G + A D+ +M G P D TY S++ A K + +AEA L+QM
Sbjct: 227 TTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVN 286
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
K L N + ++ ++ T + A + +EMR + L + L
Sbjct: 287 KGVLPDNWTYNNLIY-----------GYSSTGQWKE----AVRVFKEMRRHSILPDVVTL 331
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW----G 558
N + CK I +A ++ M P V ++ ++ G+++ D+T L+ G
Sbjct: 332 NMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLG 391
Query: 559 DIKRNIESGVLAVSRDLY--ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
D ++ D+Y L+ + G ++ M + M+ + D + Y +
Sbjct: 392 D----------GIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTT 438
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 99/246 (40%), Gaps = 26/246 (10%)
Query: 313 IMPELLEKDSIL------KMEGKQELVLFR--NGKLLHSNRAMAKLINGYKKHGKNSELS 364
I P+L+ S++ + GK E L + N +L N LI GY G+ E
Sbjct: 254 IPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAV 313
Query: 365 WLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424
+ +++ H + + ++ +L + G ++ A D+ D M + G D +YK +L
Sbjct: 314 RVFKEMRR-HSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNG 372
Query: 425 YYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE 484
Y + L M + ++ V+ + ++ ++DK A
Sbjct: 373 YATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCG-----------MLDK---AM 418
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG- 543
+ EMR+ + + I C+ + DA++ + +M + + P ++ L+ G
Sbjct: 419 IIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF 478
Query: 544 --HSSL 547
H SL
Sbjct: 479 CTHGSL 484
Score = 38.9 bits (89), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 94/231 (40%), Gaps = 24/231 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S V+ AL + + A L M G D+ TY +L+ Y ++EA + K+MR+
Sbjct: 262 SSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRR 321
Query: 444 -SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
S L ++ M++ S + + D+ +++ + + S L
Sbjct: 322 HSILPDVVTLNMLM-----------GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIML 370
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
N + KG ++ D ++ M I P + TF L+ +++ M I++ +++
Sbjct: 371 NG---YATKGCLV-DMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRD 426
Query: 563 NIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ V D+ Y T++ + G + ME M Q + DK Y
Sbjct: 427 H------GVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY 471
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/321 (21%), Positives = 138/321 (42%), Gaps = 44/321 (13%)
Query: 171 ELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDE 230
E IKPD FN++++A + G +G+ + ++M + G+ + + + + C E
Sbjct: 289 ENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPN---FVTYNSLMDGYCLVKE 345
Query: 231 LKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQ 290
+ K K + ++ + Q Y +++ K D A L +M+R + +P+
Sbjct: 346 VNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHR-KNIIPDVVTYS 404
Query: 291 DAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKL 350
LI S + R LQ++ ++ ++ + +L K+ ++A+A L
Sbjct: 405 S-----LIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNS-ILDALCKIHQVDKAIA-L 457
Query: 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG 410
+ K G I+ +++ S +I L Q G LE A + + + + G
Sbjct: 458 LTKLKDKG-----------IQPNMYTY------SILIKGLCQSGKLEDARKVFEGLLVKG 500
Query: 411 HPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVSERFSEVADKSAS 469
H ++ TY ++ + +F EA ALL +M C+ + E+++ F +
Sbjct: 501 HNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKK------- 553
Query: 470 FTDTSSLMDKSDLAESLIQEM 490
D++D+AE L++EM
Sbjct: 554 --------DENDMAEKLLREM 566
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 105/267 (39%), Gaps = 27/267 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+N + K GK E + + K+ T S ++D + + A I + M
Sbjct: 301 LVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNS-LMDGYCLVKEVNKAKSIFNTMAQG 359
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D +Y ++ + K+K F EA L K+M + ++ + VV+ +S
Sbjct: 360 GVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPD-----VVT---------YSS 405
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D S + A L+ +M + TI NS + CK + A+ + ++++
Sbjct: 406 LIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKG 465
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLA----VSRDLYETLLLNFLQ 585
I+P + T+ L+ G D R + G+L ++ D Y ++ F
Sbjct: 466 IQPNMYTYSILIKGLCQSGKLED--------ARKVFEGLLVKGHNLNVDTYTIMIQGFCV 517
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYK 612
G F + ++ M+ D Y+
Sbjct: 518 EGLFNEALALLSKMEDNGCIPDAKTYE 544
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 93/233 (39%), Gaps = 28/233 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I L ++G AA D+L ++ + Y +++ + KVK+ EA L +M
Sbjct: 196 LIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM---- 251
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+S+ S ++ ++ K + A L +M E +Y N
Sbjct: 252 ----------ISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNIL 301
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-----TILWGDI 560
+ FCK + + ++ M + I+P T+ L+ G+ ++ T+ G +
Sbjct: 302 VNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGV 361
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+I+S Y ++ F + F+ M + M ++N+ D + Y S
Sbjct: 362 NPDIQS---------YSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSS 405
>gi|255661150|gb|ACU25744.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
gi|255661152|gb|ACU25745.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 426
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/297 (19%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +M+ + + + L V +++F
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQNRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
D TY +L+T + K +F A + L++M + + +L + E ++ D S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 474 SSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
S L K+ L A SLI EM+ ++ + + +
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAV 571
K +AL I+ M+E+K + T ++ + L M ++ + WG K IE V++
Sbjct: 128 KKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y S + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
Length = 721
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 16/199 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDV-IDALIQLGFLEAAHDILDDMEL 408
L++ + K G+ E S LL ++ + F + + +V I L + G LE A ++D M L
Sbjct: 243 LLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRL 302
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
+ S TY L+TA + R+AEAL +M ++ + + +
Sbjct: 303 SKK-ASSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKC----- 356
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
++++ A+ EMR L + NS + +CK + +AL + ++
Sbjct: 357 ---------EQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRA 407
Query: 529 KIRPTVETFYYLVYGHSSL 547
+ PTV T+ L+ G+ L
Sbjct: 408 GLAPTVLTYNTLIDGYCRL 426
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 108/279 (38%), Gaps = 44/279 (15%)
Query: 313 IMPELLEKDSIL-------KMEGKQ-ELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELS 364
IMP ++ ++I+ + E Q + R LL L+N Y K G E
Sbjct: 339 IMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEAL 398
Query: 365 WLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423
WLL +++ + L + +ID +LG L A + ++M G D TY L+
Sbjct: 399 WLLGDLRRA--GLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMN 456
Query: 424 AYYKVK---MFRE--AEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD 478
KV+ M RE E L K ++ C N A T +S+ M
Sbjct: 457 GSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRI--------------CAELTLSSTPM- 501
Query: 479 KSDLAESLIQEMREEAALSTIYK----LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
++RE L IY N I CK + DA ++ +M ++P
Sbjct: 502 --------AFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDC 553
Query: 535 ETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESGVLAVS 572
T+ L++ H + R+ +L G + ++ V+ +
Sbjct: 554 ITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYT 592
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 26/217 (11%)
Query: 417 TYKSLLTAYYKVKMFREAEALLKQMRK---SCLVQNLSCEMVVS--------ERFSEVAD 465
TY +LL ++ K EA LLK+M + +++ +V+S E ++ D
Sbjct: 239 TYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVD 298
Query: 466 ------KSASFTDT---SSLMDKSDL--AESLIQEMREEAALSTIYKLNSSIYFFCKGKM 514
K++SFT ++L+++ + AE+L EM E + T+ N+ I+ K +
Sbjct: 299 SMRLSKKASSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQ 358
Query: 515 IGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD 574
A + M+ M + P V T+ L+ + ++ L GD++R LA +
Sbjct: 359 AEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRR----AGLAPTVL 414
Query: 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
Y TL+ + + G + M +Q + D Y
Sbjct: 415 TYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTY 451
>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 630
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 14/158 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID+L G L+ A +L +ME++G + TY +L+ + K K EAE + QM
Sbjct: 320 LIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQME--- 376
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+Q LS V + KS + + LMD +M E + NS
Sbjct: 377 -IQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMD----------QMIMEGLKPDKFTYNSM 425
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ +FC+ I A I + M P + T+ L+ G
Sbjct: 426 LTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGG 463
>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
Length = 668
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 110/295 (37%), Gaps = 25/295 (8%)
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
L + A+ LI+ G+ +E L L + + ++ +++G L+ A
Sbjct: 259 LTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNA 318
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
+LD+M G D TY L+ AY + + A LLK+M + + +
Sbjct: 319 EQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAG 378
Query: 460 FSEVADKSASFT---------------------DTSSLMDKSDLAESLIQEMREEAALST 498
F + D +F DT + A +MREE
Sbjct: 379 FRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPD 438
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG 558
+ N+ I CKG A +++ M+E P T+ ++ E + + +
Sbjct: 439 VVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLS 498
Query: 559 DIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++K E G L + Y TL+ + + G ++ ++ I MK + MY +
Sbjct: 499 EMK---EQG-LVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHA 549
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 94/203 (46%), Gaps = 24/203 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+IDA + G + A ++ ++M + P +TTY ++ + + + EA+L +M++
Sbjct: 445 LIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQG 504
Query: 446 LVQNLSCEMVV------SERFSEVAD-----KSASFTDTSSLMDK----------SDLAE 484
LV N+ + S R+ E D K+ + ++ +D A
Sbjct: 505 LVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHAL 564
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
++++ M+ + +I LNS I F + + + +A + + M+E +RP V T+ L+
Sbjct: 565 NVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKAL 624
Query: 545 SSLEMYRDITILWGDIKRNIESG 567
+E + + +++ ++ I SG
Sbjct: 625 IRVEQFDKVPVIYEEM---ITSG 644
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 121/296 (40%), Gaps = 39/296 (13%)
Query: 350 LINGYKKH---GKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ING K G EL L +++ HH + + +ID+L + G LE A + DM
Sbjct: 43 IINGLCKSNDLGAGMELFEEL--VERGHHP--DVVTYNTLIDSLCKAGDLEEARRLHGDM 98
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSC-LVQNL-------------- 450
G + TY L+ KV EA L+++M RKSC ++ N+
Sbjct: 99 SSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQS 158
Query: 451 ----SCEMVVSERFSE--VADKSASFTDTSSLMD------KSDLAESLIQEMREEAALST 498
+CE++ S R V+ + +F S+L+D + D A S+ +M +
Sbjct: 159 MTAEACELMRSLRDGSLRVSPDTVTF---STLIDGLCKCGQIDEACSVFDDMIAGGYVPN 215
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD-ITILW 557
+ N+ + CK + A + M + + P V T+ LV + + +L
Sbjct: 216 VITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLH 275
Query: 558 GDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G R VL + + L+ + G FE+ + M +N+ D + + +
Sbjct: 276 GMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGA 331
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 90/447 (20%), Positives = 165/447 (36%), Gaps = 62/447 (13%)
Query: 180 FNLVLHACVRFGSSLKGQHIMEL-MSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYI 238
+N+VL + R G + + I M++ GV A +I+ I C+ ++L
Sbjct: 4 YNIVLQSLCRAGDTARALEIFRGEMARDGV---APTIVTYNTIINGLCKSNDLGAGMELF 60
Query: 239 DQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLI 298
++L H Y +L+ K D++ A L DM+ R +PN Y +
Sbjct: 61 EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSS-RGCVPN-------VVTYSV 112
Query: 299 SIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELV---LFRNGKLLHSNRAMAKLINGYK 355
I N C + +++ +EL+ ++ +L + ++G
Sbjct: 113 LI---NGLC--------------KVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLC 155
Query: 356 KHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMELAGHPMD 414
K +E L+ S++ T+ S +ID L + G ++ A + DDM G+ +
Sbjct: 156 KQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPN 215
Query: 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTS 474
TY +L+ K A A+++ M + ++ V+ + F + +
Sbjct: 216 VITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKAS---------- 265
Query: 475 SLMDKSDLAESLIQEMREEAALSTI-----YKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
+ D A L+ M + N I CK A ++ M
Sbjct: 266 ----RVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKN 321
Query: 530 IRPTVETFYYLVYG---HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
++P V TF L+ G +E RDI L G++ + V+ Y L+ +
Sbjct: 322 LQPDVMTFGALIDGLCKAGQVEAARDILDLMGNL--GVPPNVVT-----YNALVHGLCKS 374
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKS 613
G E + + M D + Y S
Sbjct: 375 GRIEEACQFLEEMVSSGCVPDSITYGS 401
>gi|410110071|gb|AFV61115.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
macrostachya]
Length = 437
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 19/203 (9%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 16 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 73
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ +G D Y +++ + K K+FREA +L+ +MR + ++ N + + + E
Sbjct: 74 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVE---- 129
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ F + A S+ EMRE L + N I + + M +A K++ M+
Sbjct: 130 NKKFLE----------ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 179
Query: 527 EMKIRPTVETFYYL--VYGHSSL 547
+M I P V ++ L VYG + L
Sbjct: 180 KMGIEPNVVSYNTLLRVYGDAEL 202
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 108/257 (42%), Gaps = 28/257 (10%)
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
D+M D TY +L+T + K +F A + L++M + + +L + E ++
Sbjct: 1 DEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60
Query: 464 ADKSASFTDTSSL------------------MDKSDL---AESLIQEMREEAALSTIYKL 502
D S + + S L K+ L A SLI EMR +
Sbjct: 61 CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIK 561
++ + + + K +AL ++ M+E+K + T ++ + L M ++ + WG K
Sbjct: 121 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKH 621
IE V++ Y TLL + F + + M+++N+ + + Y S + + K
Sbjct: 181 MGIEPNVVS-----YNTLLRVYGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKT 235
Query: 622 LYRRLKVSNARTEAQSK 638
L K +N E Q++
Sbjct: 236 LEHE-KANNLIQEMQNR 251
>gi|297805886|ref|XP_002870827.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316663|gb|EFH47086.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 582
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 19/160 (11%)
Query: 421 LLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS 480
LL + K ++ + K+M K +V N+ V+ S+ D S
Sbjct: 174 LLNSLVKERLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGD--------------S 219
Query: 481 DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
+ AE L+ EM E+ I+ N+ I +CK M +AL + RM+ + P + T+ L
Sbjct: 220 EKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPDIVTYNSL 279
Query: 541 VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLL 580
++G S R+ T L+ IK GV+ + Y TL+
Sbjct: 280 IHGFSREGRMREATRLFRKIK-----GVVMANHVTYTTLI 314
>gi|242046988|ref|XP_002461240.1| hypothetical protein SORBIDRAFT_02g043430 [Sorghum bicolor]
gi|241924617|gb|EER97761.1| hypothetical protein SORBIDRAFT_02g043430 [Sorghum bicolor]
Length = 551
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 17/181 (9%)
Query: 366 LLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422
L+ + K H G + C+ +IDA + + +A + +M G D+ TY +L+
Sbjct: 344 LIFGLCKNHMEVGGFCDIVSCNILIDAFCKAKKVTSALKLFKEMGYKGIQADAVTYGTLI 403
Query: 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL 482
Y V AE + +QM K+ +V N++ ++ K+ F +
Sbjct: 404 NGLYGVGYCNLAEEIFEQMLKAQVVPNVNLYNIMLHNLC----KAGQF----------EQ 449
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A+ + +M ++ + N+ IY+ K +A+ ++R M+ + P TF YL+
Sbjct: 450 AQKIFLQMIQKEVSPDVITFNTLIYWLGKSSRAIEAVDLFRDMRARGVEPDSLTFRYLIS 509
Query: 543 G 543
G
Sbjct: 510 G 510
>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
Length = 816
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 39/239 (16%)
Query: 380 STLCS-------DVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
T+CS VID + G + A D+ +M G P D TY S++ A K +
Sbjct: 214 GTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMD 273
Query: 433 EAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491
+AEA L+QM K L N + ++ ++ T + A + +EMR
Sbjct: 274 KAEAFLRQMVNKGVLPDNWTYNNLIY-----------GYSSTGQWKE----AVRVFKEMR 318
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYR 551
++ L + LN+ + CK I +A ++ M P V ++ ++ G+++
Sbjct: 319 RQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLV 378
Query: 552 DITILW----GDIKRNIESGVLAVSRDLY--ETLLLNFLQGGYFERVMEVIGYMKKQNM 604
D+T L+ GD ++ D+Y L+ + G ++ M + M+ +
Sbjct: 379 DMTDLFDLMLGD----------GIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGV 427
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 147/358 (41%), Gaps = 55/358 (15%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGV----VADAHSIIILAQIHEMNCQR 228
I PD FN+++ A G K I M GV V I L +I +M+
Sbjct: 392 IAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMD--- 448
Query: 229 DELKKFKCYIDQLSTP--FAHH--YQQF--YESLLSLHFKFDDIDAAGELILDMNRYREP 282
D ++KF IDQ P +A+H Q F + SLL +I G + LD+ +
Sbjct: 449 DAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG-MRLDIVFFGSI 507
Query: 283 LPN-PKLRQ--DAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILK---MEGKQELVLFR 336
+ N KL + DAQ + +++ + + P+ + + ++ + GK E L
Sbjct: 508 INNLCKLGRVMDAQNIFDLTV---------NVGLHPDAVVYNMLMDGYCLVGKMEKALRV 558
Query: 337 NGKLLHSN-----RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVID 388
++ + L+NGY K G+ E LS+ +E G + L + +ID
Sbjct: 559 FDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEG----LSLFREMLQKGIKPSTILYNIIID 614
Query: 389 ALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL-- 446
L + G A +M +G M+ TY +L +K + F EA L K++R +
Sbjct: 615 GLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKI 674
Query: 447 ----VQNLSCEMVVSERFSEVADKSASFTD--------TSSLMDKSDLAESLIQEMRE 492
+ + M + R E D AS + T S+M + L E L++E +
Sbjct: 675 DIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAED 732
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/255 (19%), Positives = 100/255 (39%), Gaps = 33/255 (12%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S V+ AL + ++ A L M G D+ TY +L+ Y ++EA + K+MR+
Sbjct: 260 SSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRR 319
Query: 444 SCLVQNLS---------CEMVVSERFSEVADKSA----------------SFTDTSSLMD 478
++ ++ C+ + +V D A + L+D
Sbjct: 320 QSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVD 379
Query: 479 KSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFY 538
+DL + ++ + IY N I + M+ A+ I+ M++ ++P V T+
Sbjct: 380 MTDLFDLMLG----DGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYM 435
Query: 539 YLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGY 598
++ + D + + I+ GV+ + Y L+ F G + E+I
Sbjct: 436 TVIAALCRIGKMDDAMEKFNQM---IDQGVVP-DKYAYHCLIQGFCTHGSLLKAKELISE 491
Query: 599 MKKQNMYVDKLMYKS 613
+ M +D + + S
Sbjct: 492 IMNNGMRLDIVFFGS 506
>gi|15241491|ref|NP_196981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|9755745|emb|CAC01876.1| putative protein [Arabidopsis thaliana]
gi|332004692|gb|AED92075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 938
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 15/196 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ +IN K GK E LLL +E + + ++D+L + A + M
Sbjct: 263 SSIINRLCKGGKVLE-GGLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMV 321
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
+ G P+D Y L+ +K REAE K + + V N+ + + + D S
Sbjct: 322 VRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLS 381
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ AE +I +M E++ + + +S I + K M+ +A+ + R+M++
Sbjct: 382 S--------------AEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMED 427
Query: 528 MKIRPTVETFYYLVYG 543
+ P T+ ++ G
Sbjct: 428 QNVVPNGFTYGTVIDG 443
>gi|255661198|gb|ACU25768.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 426
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G + LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITYFGKEGLFDDALSWL--QKMEQDRVRGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y S++ + K K+FREA +L+ +MR + ++ + L V +++F
Sbjct: 71 KRSGIMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLTMYVENKKF 130
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E A + L+D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVVSYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQSRG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNAIT-----YSTIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIVAYER 301
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 32/225 (14%)
Query: 333 VLFRNGKLLHS---NRAMAK------------LINGYKKHGKNSELSWLLL-SIKKEHHS 376
VL + GKL H+ RAMAK LI+ K G+ E + SI K
Sbjct: 782 VLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTP 841
Query: 377 FGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEA 436
+ S +ID+ + G ++ A ++ ++M+ P + TY +LL+ K AE
Sbjct: 842 --NVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEK 899
Query: 437 LLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAAL 496
LL++M K V +L ++ D M D AES + M+E+ +
Sbjct: 900 LLEEMEKVGCVPDLVTYNIL--------------IDGVGKMGMVDEAESYFKRMKEKGIV 945
Query: 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+ S I K + +A +++ M+E P+V T+ L+
Sbjct: 946 PDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLI 990
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 110/275 (40%), Gaps = 39/275 (14%)
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
LL + K+H + ++D L + G L+ A +L +ME G TY SL+ ++Y
Sbjct: 550 LLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFY 609
Query: 427 KVKMFREAEALLKQM-RKSCLVQNLSCEMVV-----SERFSEVADKSASFTDT------- 473
K E+ +L +M RK C+ + +V+ S+ + D +
Sbjct: 610 KRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLG 669
Query: 474 ------SSLM--DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
SSL+ +K D A + E++E + + + N + K + +A K+ M
Sbjct: 670 NYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSM 729
Query: 526 QEMKIRPTVETFYYLVYG-------HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYET 578
+ I P + T+ L+ G + M+ +T + E V+A Y +
Sbjct: 730 KNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMT------EEGHEPDVVA-----YTS 778
Query: 579 LLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
L+ +GG + + M K+ D + Y S
Sbjct: 779 LMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSS 813
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 22/230 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ L + G LE A ++ +M+ D+ Y +L+ K A L K+M+
Sbjct: 361 TTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKD 420
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
LV NL ++ + + ++ L +++E+ A+ ++ N
Sbjct: 421 RGLVPNLRTYNIMISVLGKAGRQPEAW--------------QLFHDLKEQGAVPDVFTYN 466
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ I KG + L I + M E + GH D T+ + +
Sbjct: 467 TLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNA--GHEGTIEGADRTVEYPSL--- 521
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G ++ Y TL+ F+ G+ + ++++ MKK + Y +
Sbjct: 522 ---GFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTT 568
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 17/148 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
++++ L + G L A +L++ME G D TY L+ K+ M EAE+ K+M++
Sbjct: 882 NNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKE 941
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+V ++ + E +V DK A L M EE ++ N
Sbjct: 942 KGIVPDVITFTSLIESLGKV--------------DKLLEACELFDSMEEEGYNPSVVTYN 987
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIR 531
I + + +A I+ EMK++
Sbjct: 988 VLIDILGRAGKVHEAAMIF---HEMKVK 1012
>gi|255661066|gb|ACU25702.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 429
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHH--SFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + +NS W S+ + + GE + D+++ + + G L
Sbjct: 224 SSPYMDMLANKFTSYSQNS---WKPFSLARGVRVTAKGEGSFDLDMVNTYLSIFLAKGKL 280
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F+EA ++L M ++ +++ V+
Sbjct: 281 SVACKLFEIFTNMGVDPASYTYNSIMSSFVKRGYFKEAWSVLHSMGETVYPADIATYNVI 340
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 341 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 386
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS RD
Sbjct: 387 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLRD 422
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREEAAYTMFLDLKRKGNNFVDGISYSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + A L+K +R LV +L
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWAGKLMKHIRDGNLVPDL 165
>gi|255661064|gb|ACU25701.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 429
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + +NS W S+ + + GE + D+++ + + G L
Sbjct: 224 SSPYMDMLANKFTSYSQNS---WKPFSLARGVRVTAKGEGSFDLDMVNTYLSIFLAKGKL 280
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F+EA ++L M ++ +++ V+
Sbjct: 281 SVACKLFEIFTNMGVDPASYTYNSIMSSFVKRGYFKEAWSVLHSMGETVYPADIATYNVI 340
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 341 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 386
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS RD
Sbjct: 387 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLRD 422
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREEAAYAMFLDLKRKGNNFVDGISYSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + A L+K +R LV +L
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWAGKLMKHIRDGNLVPDL 165
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 21/183 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I+ L ++G A ++ DDM G D TY +++ K+ A L K+M +
Sbjct: 49 TTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEE 108
Query: 444 ----------SCLVQNLSCEMVVSER---FSEVADKSAS---FTDTSSLMDKSDL----- 482
S L+ +L V+E FS + K S FT TS + +
Sbjct: 109 AGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKE 168
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A +L+ EM + + N + FCK + A + + M EM + P V T+ L+Y
Sbjct: 169 ASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMY 228
Query: 543 GHS 545
G+S
Sbjct: 229 GYS 231
Score = 42.7 bits (99), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 52/262 (19%), Positives = 99/262 (37%), Gaps = 38/262 (14%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
++D + G + AA +L M G D TY SL+ Y EA L M K
Sbjct: 191 LVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKG 250
Query: 445 CLVQNLSCEMVVS------------ERFSEVADKSASFTDTS--------SLMDKSDLAE 484
C S ++++ + F+E+ + ++ + S + + A+
Sbjct: 251 CKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQ 310
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
L + M L +Y + FCK +G A +++R MQ ++P + + LV
Sbjct: 311 DLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAM 370
Query: 545 SSLEMYRDITILWGD-----IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
+D L+ + ++ N++ +Y T++ + G + +E M
Sbjct: 371 CKSGNLKDARELFSELFVIGLQPNVQ---------IYTTIINGLCKEGLLDEALEAFRNM 421
Query: 600 KKQNMYVDKLMYK---SEFLKH 618
+ D+ Y FL+H
Sbjct: 422 EDDGCPPDEFSYNVIIRGFLQH 443
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 76/376 (20%), Positives = 142/376 (37%), Gaps = 42/376 (11%)
Query: 298 ISIGSPNLRCGLKLQIMPELLEKDSILKMEGK-----QELVLFRN---GKLLHSNRAMAK 349
+ +G L G+KL + P ++ +++ GK Q + LF + +
Sbjct: 26 VDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTT 85
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+ING K G+ + + L +++ T S +I +L + + A DI M+
Sbjct: 86 IINGLCKIGETALAAGLFKKMEEAGCQLNVVTY-STLIHSLCKYRRVNEALDIFSYMKAK 144
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
TY SL+ ++EA ALL +M ++ N+ V+ + F + A+
Sbjct: 145 DISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAA 204
Query: 470 ---------------FTDTSSLMDKSDL------AESLIQEMREEAALSTIYKLNSSIYF 508
+SLM + A L M + ++ + I
Sbjct: 205 EGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILING 264
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
+CK K I +A +++ M P ++ L++G L R+ D+ +N+ +
Sbjct: 265 YCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQ----DLFKNMHTNG 320
Query: 569 LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY--------KSEFLKHHK 620
+ Y LL F + GY + + M+ + + +MY KS LK +
Sbjct: 321 NLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDAR 380
Query: 621 HLYRRLKVSNARTEAQ 636
L+ L V + Q
Sbjct: 381 ELFSELFVIGLQPNVQ 396
>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
Length = 702
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 102/222 (45%), Gaps = 22/222 (9%)
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHS---FGESTLCSDVIDAL 390
+ +NG ++++ + L+ Y K G + + SI+KE + F + ++ A
Sbjct: 431 MLKNG-FKPNDQSYSLLLQCYAKGGNAAGIE----SIEKEVYVGTIFPSWVILRTLVIAN 485
Query: 391 IQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
+ LE +++ G+ D + S+L Y K ++ +A + +++S L
Sbjct: 486 FKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQS----GL 541
Query: 451 SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFC 510
S +++ ++ KS ++S AE ++++++ + N+ I FC
Sbjct: 542 SPDLITYNSLMDMYAKS----------NESWEAEKILKQLKSSQVKPDVVSYNTVINGFC 591
Query: 511 KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
K +I +A +I M + P V T++ LV G++SLEM+ +
Sbjct: 592 KQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNE 633
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 47/236 (19%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S VI A + G L+ A +D++ GH TY +LL + K + EA +LK+M
Sbjct: 164 STVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMED 223
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
S + V + ++ F + + +D M + L + N
Sbjct: 224 S----GCQPDAVTYNELAGTYARAGFFEEAAKCLDT----------MTSKGLLPNTFTYN 269
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG--------HSSLEMYRDIT- 554
+ + + + +AL ++ RM++ P V T Y L++G + LEM +++
Sbjct: 270 TVMTAYANVGRVDEALALFDRMKKNGYVPNVNT-YNLIFGMLGKKSRFTAMLEMLEEMSR 328
Query: 555 -------ILWGDI-----KRNIESGVLAV-----------SRDLYETLLLNFLQGG 587
+ W + KR +E V V SRD Y TL+ + + G
Sbjct: 329 SGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCG 384
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDM 406
L+ + K G +E L + KE G ++ +++ + GF E A LD M
Sbjct: 201 LLQVFGKAGNYTEA----LRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTM 256
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
G ++ TY +++TAY V EA AL +M+K+ V N++
Sbjct: 257 TSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVN 301
>gi|223635763|sp|Q9LER0.2|PP381_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g14770, mitochondrial; Flags: Precursor
Length = 940
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 15/196 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ +IN K GK E LLL +E + + ++D+L + A + M
Sbjct: 265 SSIINRLCKGGKVLE-GGLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMV 323
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
+ G P+D Y L+ +K REAE K + + V N+ + + + D S
Sbjct: 324 VRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLS 383
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ AE +I +M E++ + + +S I + K M+ +A+ + R+M++
Sbjct: 384 S--------------AEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMED 429
Query: 528 MKIRPTVETFYYLVYG 543
+ P T+ ++ G
Sbjct: 430 QNVVPNGFTYGTVIDG 445
>gi|357493977|ref|XP_003617277.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518612|gb|AET00236.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 502
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 117/275 (42%), Gaps = 47/275 (17%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+ L + G E+A +LD M G D+ T+ +L ++ + EAE + +M +
Sbjct: 147 LINGLCKEGGYESAKCVLDKMLGVGFCPDAATFNPVLVESFRKEDVWEAERVFNEMLQCG 206
Query: 446 LVQNL---SCEMVVSERFSEVADKSASF---------TDT-------SSLMDKSDLAESL 486
+V +L S + V R E+ A F DT + +D++ +L
Sbjct: 207 VVPDLISFSSIIGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNNDVSGAL 266
Query: 487 I--QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
EM E + + + N+ + C+GKM+ DA ++++ M E + P T L++G+
Sbjct: 267 KVRNEMVERSCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGY 326
Query: 545 -------SSLEMYRDITI---------LWGD-IKRNIESGVLAVS---------RDLYET 578
+L ++ IT+ LW D I R I ++ S + E+
Sbjct: 327 CKDGNMTKALSLFETITLRSEMEKAKELWRDMISREIFPHYISFSILINGFCSLGLVSES 386
Query: 579 LLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
L+ +L+ G + + + M + + D + Y +
Sbjct: 387 LIKGYLRAGNVSKANDFLNTMVSEGVPPDCITYNT 421
>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
Length = 677
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 92/220 (41%), Gaps = 24/220 (10%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL---VQNLSCE 453
E A ++ + M+ + +Y +L+ AY M +EA LL +M K + V ++S
Sbjct: 275 EKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTL 334
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
+ R ++ E++++ R NS I +
Sbjct: 335 LAACGRCRQITR-----------------IETILEAARSRGIDLNTVAYNSGIKSYLSFG 377
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR 573
AL++Y M+E ++P T+ L+ G S L Y + + D+ ++S V + ++
Sbjct: 378 DYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDM---VDSKV-SSTK 433
Query: 574 DLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++Y +L+ ++++ G MKK + D L Y +
Sbjct: 434 EVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTT 473
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 99/483 (20%), Positives = 188/483 (38%), Gaps = 62/483 (12%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD--AHSIIILAQIHEMNCQRDE 230
I P +N V++AC G+ K + + M++ GV D H+I++ A
Sbjct: 77 IPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSA----------- 125
Query: 231 LKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFD---DIDAAGELILDMNRYRE-----P 282
LK Y +S +L+ I GE I N RE P
Sbjct: 126 LKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCP 185
Query: 283 LPNPKLRQDAQKPYLISIGSPNLRCGLKLQIM----PELLEKDSILKMEG-----KQELV 333
P+ Y I N + L + P ++ +S+L ++ L
Sbjct: 186 -PDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALA 244
Query: 334 LF----RNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDA 389
+F +NG L + L+N Y + + + + +KK + + + +IDA
Sbjct: 245 IFNLIKKNG-LRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSY-NALIDA 302
Query: 390 LIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN 449
G L+ A +L +ME G D + +LL A + + E +L+ R + N
Sbjct: 303 YGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLN 362
Query: 450 L------------------SCEMVVSERFSEVADKSASFT---DTSSLMDKSDLAESLIQ 488
+ E+ S R S V + ++ SS + K + +
Sbjct: 363 TVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFE 422
Query: 489 EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548
+M + ST +S IY + K + +A + M++ P V T+ L+ +++
Sbjct: 423 DMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGG 482
Query: 549 MYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDK 608
++ W D+ + +E + + +L+ F +GG ERV++++ +MKK+++ +++
Sbjct: 483 GWKRA---W-DLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQ 538
Query: 609 LMY 611
Y
Sbjct: 539 KSY 541
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 36/242 (14%)
Query: 384 SDVIDALI----QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK 439
+D+ ++LI + G A +I++DM A P TTY +++ A +++A L K
Sbjct: 46 ADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCK 105
Query: 440 QMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499
+M ++ + +L +V A S + S + M+ S
Sbjct: 106 KMTENGVGPDLVTHNIVLSALKNGAQYSKAI--------------SYFEIMKGANVTSDT 151
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR--PTVETFY-----YLVYGH-SSLEMYR 551
+ LN I+ K G+A++++ M+E + + P V T+ Y +YG + +
Sbjct: 152 FTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIF 211
Query: 552 DITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
D+ + G +K NI + Y +LL + G + + +KK + D + Y
Sbjct: 212 DLMVAEG-VKPNIVA---------YNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSY 261
Query: 612 KS 613
S
Sbjct: 262 TS 263
>gi|255661056|gb|ACU25697.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 429
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + +NS W S+ + + GE + D+++ + + G L
Sbjct: 224 SSPYMDMLANKFTSYSQNS---WKPFSLARGVRVTAKGEGSFDLDMVNTYLSIFLAKGKL 280
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F+EA ++L M ++ +++ V+
Sbjct: 281 SVACKLFEIFTNMGVDPASYTYNSIMSSFVKRGYFKEAWSVLHSMGETVYPADIATYNVI 340
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 341 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 386
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS RD
Sbjct: 387 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLRD 422
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREEAAYTMFLDLKRKGNNFVDGISYSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + A L+K +R LV +L
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWAGKLMKHIRDGNLVPDL 165
>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 18/190 (9%)
Query: 350 LINGYKKHGKN-SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
+++ Y K G+ S + LL ++ + F E T C+ VI A + G L+ A DD++L
Sbjct: 278 MLDVYGKMGRAWSMILELLDEMRSKGLEFDEFT-CTTVISACGREGILDEARRFFDDLKL 336
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVSERFSEVADKS 467
G+ + TY S+L + K ++ EA +LK+M +C ++ +V+ A
Sbjct: 337 NGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVA------AYVR 390
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
A F D + ++I M + + + I + K AL+++ +M+E
Sbjct: 391 AGFHDEGA---------AVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKE 441
Query: 528 MKIRPTVETF 537
+ P V T+
Sbjct: 442 LGCVPNVCTY 451
>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 874
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 33/212 (15%)
Query: 363 LSWL-----LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTT 417
+SWL L I + ++F + +I AL ++AA ++ D+M G + T
Sbjct: 131 VSWLYKDMVLCGIAPQTYTF------NLLIRALCDSSCVDAARELFDEMPEKGCKPNEFT 184
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477
+ L+ Y K + + LL M E F + +K T SS
Sbjct: 185 FGILVRGYCKAGLTDKGLELLNAM----------------ESFGVLPNKVIYNTIVSSFC 228
Query: 478 --DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI----R 531
++D +E ++++MREE + I NS I CK + DA +I+ M+ + R
Sbjct: 229 REGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPR 288
Query: 532 PTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
P T+ ++ G + + D L+ I+ N
Sbjct: 289 PNSITYNLMLKGFCKVGLLEDAKTLFESIREN 320
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 45/230 (19%)
Query: 356 KHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM-- 413
K G+ SE LL + ++ + ++ C+ ++D L G L+ A +I+ M + G
Sbjct: 443 KMGRISEAEELLRKMNEKGYGL-DTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALG 501
Query: 414 ---------------------DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
D TY +LL K F EA+ L +M L +
Sbjct: 502 NLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVA 561
Query: 453 EMVVSERFSEVADKSASF----------------TDTSSLMD---KSDLAE--SLIQEMR 491
+ F + S++F T S ++ K+ + E L+ EM+
Sbjct: 562 YNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMK 621
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
E+ I N++I + C+G+ + DA + M + I P V +F YL+
Sbjct: 622 EKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLI 671
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 114/285 (40%), Gaps = 43/285 (15%)
Query: 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVI-DALIQLGFLEAAHDILDDMELA 409
+ G +HGK E +L + + G S +++ D L +LG L A I+ M+
Sbjct: 333 LQGLVRHGKFIEAETVLKQMTDK--GIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRN 390
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQ-MRKSCLVQNLSCEMVVSERFSEVADKSA 468
G D+ TY LL Y V A++LL++ MR +CL +C +++ +
Sbjct: 391 GVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWK------- 443
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
M + AE L+++M E+ N + C + A++I + M+
Sbjct: 444 --------MGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMR-- 493
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNFLQG 586
V+G ++L + I D IE+ L DL Y TLL +
Sbjct: 494 ------------VHGSAALGNLGNSYIGLVD-DSLIENNCLP---DLITYSTLLNGLCKA 537
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
G F + M + + D + Y H H ++ K+S+A
Sbjct: 538 GRFAEAKNLFAEMMGEKLQPDSVAYN--IFIH--HFCKQGKISSA 578
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 94/237 (39%), Gaps = 32/237 (13%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID + +E A +L++M+ G P Y SL+ A K K + A L +++++
Sbjct: 410 SILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE 469
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+C + V+ + K+ D +L D EM + +Y N
Sbjct: 470 NCGSSSARVYAVMIKHLG----KAGRLDDAINLFD----------EMSKLGCTPNVYAYN 515
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITIL 556
+ + + M+ +AL R+MQE P + ++ ++ G H ++EM
Sbjct: 516 ALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEML------ 569
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
N+++ + Y T+L G FE E++ M D + Y S
Sbjct: 570 -----TNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSS 621
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 101/243 (41%), Gaps = 27/243 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGH--PMDSTTYKSLLTAYYKVKMFREAEALLKQM 441
+ +I LI G E H++ ++M GH P D+ TY +L++A+ K+ A LL +M
Sbjct: 198 NSMIIMLIHEGQYEKVHELYNEMSNEGHCHP-DTVTYSALISAFCKLGRQDSAIRLLNEM 256
Query: 442 RKSCL----------------VQNLSCEMVVSERFSEVADKSASFTDTSSL-----MDKS 480
+++ + + N+ + + E + + FT T + +
Sbjct: 257 KENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRI 316
Query: 481 DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
D A EM+ E +N+ I F K + D LK++ M P V T+ +
Sbjct: 317 DEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTI 376
Query: 541 VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
+ + E ++ ++ +R SG+ + S Y L+ F + E+ M ++ M
Sbjct: 377 I--KALFESKSRVSEVFSWFERMKGSGI-SPSPFTYSILIDGFCKTNRIEKAMMLLEEMD 433
Query: 601 KQN 603
++
Sbjct: 434 EKG 436
>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Brachypodium distachyon]
Length = 800
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
LE ++ GH D + S+L+ Y K M+R+A + +++ LS +++
Sbjct: 589 LEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQG----GLSPDLI 644
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
++ KS ++S AE +++ ++ + N+ + FCK +I
Sbjct: 645 TYNSMMDMYAKS----------NESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLI 694
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A +I M +RP V T++ LV G++S EM+ +
Sbjct: 695 KEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFSE 731
>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 933
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 119/287 (41%), Gaps = 34/287 (11%)
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL 393
+ RNG LL ++ L+ G + G+ SE L + K + T C+ +ID+L +
Sbjct: 265 MVRNGVLLDV-VTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCT-LIDSLAKA 322
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G + +L +M G MD TY +L+ K E +K + L NLS
Sbjct: 323 GRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDE----VKDTLRFALSDNLSPN 378
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
V + K+ + D AE ++ EM E++ + +S I F K
Sbjct: 379 GVTYTVLIDALCKAHNV----------DEAEQVLLEMEEKSISPNVVTFSSVINGFVKRG 428
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITILWGDIKRNIES 566
++ A + R M+E I P V T+ L+ G ++LE+Y D +L +K
Sbjct: 429 LLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHD--MLCEGVK----- 481
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
V++ + ++L+ Q G E M + + +D + Y +
Sbjct: 482 ----VNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTT 524
>gi|255661058|gb|ACU25698.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 429
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + +NS W S+ + + GE + D+++ + + G L
Sbjct: 224 SSPYMDMLANKFTSYSQNS---WKPFSLARGVRVTAKGEGSFDLDMVNTYLSIFLAKGKL 280
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F+EA ++L M ++ +++ V+
Sbjct: 281 SVACKLFEIFTNMGVDPASYTYNSIMSSFVKRGYFKEAWSVLHSMGETVYPADIATYNVI 340
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 341 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 386
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS RD
Sbjct: 387 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLRD 422
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREEAAYTMFLDLKRKGNNFVDGISYSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + A L+K +R LV +L
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWAGKLMKHIRDGNLVPDL 165
>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 15/224 (6%)
Query: 337 NGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL 396
NG+ A + +ING + G+ E++ +L + K H +C+ VI+ ++ L
Sbjct: 397 NGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTK-HGCKPNPYVCNAVINGFVRASKL 455
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
E A +M G TY +L+ K + F EA AL+K+M + N+ ++
Sbjct: 456 EDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLL 515
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ K D+A +L + E+ + N I+ C +
Sbjct: 516 MNGLCQ--------------GKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVE 561
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
DAL++Y M++ P + T L+ G + + + +W I
Sbjct: 562 DALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHI 605
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 54/262 (20%), Positives = 109/262 (41%), Gaps = 33/262 (12%)
Query: 379 ESTLCSD------VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
E C+D ++ L + G+L A IL++ E +D+ Y S++ +
Sbjct: 362 EKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLD 421
Query: 433 EAEALLKQMRK-SCLVQNLSCEMVVSE--RFSEVADKSASFTDT------------SSLM 477
E +L QM K C C V++ R S++ D F + ++L+
Sbjct: 422 EVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLI 481
Query: 478 DKSDLAE------SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR 531
+ AE +L++EM ++ + + + C+GK + AL ++ + E +
Sbjct: 482 NGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFK 541
Query: 532 PTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGGYFE 590
P V+ +++G S D L+ ++K RN ++ + TL+ F + FE
Sbjct: 542 PDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVT-----HNTLMEGFYKVRDFE 596
Query: 591 RVMEVIGYMKKQNMYVDKLMYK 612
R ++ ++ + + D + Y
Sbjct: 597 RASKIWDHILQYGLQPDIISYN 618
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 92/210 (43%), Gaps = 21/210 (10%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+ A ++L+ M G D +Y +L+ + K +A L +M + + +++C +
Sbjct: 140 FDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNI 199
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+ + F + D +++ S++ E L ++ + I N I CK
Sbjct: 200 LIDGFFKKGD----------ILNASEIWERL---LKGPSVYPNIPSYNVMINGLCKCGKF 246
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL 575
++ +I+ RM++ + + T+ L++G T ++ ++ N VS D+
Sbjct: 247 DESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAEN------GVSPDV 300
Query: 576 --YETLLLNFLQGGYFERVMEVIGYMKKQN 603
Y T+L +L+ G E +E+ M+K+
Sbjct: 301 VVYNTMLNGYLRAGRIEECLELWKVMEKEG 330
>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
Length = 544
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 91/217 (41%), Gaps = 20/217 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++ AL G + AH + M + P D TY L+ Y K+ EA++L+K++ K+
Sbjct: 182 LLSALSDSGRMAEAHALFSAMTCS--P-DIMTYNVLMDGYCKIGQTYEAQSLMKEILKAG 238
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
N+ ++ + + +DK + A + +M E + N+
Sbjct: 239 YEPNVFTYSIIINCYCK--------------LDKVEEAWEVFMKMIESNCVPNAVTFNTL 284
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I FCK M+ DA+K++ M+++ + T+ T+ L+ SL R D+ +E
Sbjct: 285 IAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLI---DSLCKKRGGVYTAVDLFNKLE 341
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602
L + Y +L+ F M+ M+ +
Sbjct: 342 GAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGK 378
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 94/237 (39%), Gaps = 32/237 (13%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID + +E A +L++M+ G P Y SL+ A K K + A L +++++
Sbjct: 410 SILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE 469
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+C + V+ + K+ D +L D EM + +Y N
Sbjct: 470 NCGSSSARVYAVMIKHLG----KAGRLDDAINLFD----------EMSKLGCTPNVYAYN 515
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITIL 556
+ + + M+ +AL R+MQE P + ++ ++ G H ++EM
Sbjct: 516 ALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEML------ 569
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
N+++ + Y T+L G FE E++ M D + Y S
Sbjct: 570 -----TNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSS 621
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 100/242 (41%), Gaps = 25/242 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPM-DSTTYKSLLTAYYKVKMFREAEALLKQMR 442
+ +I LI G E H++ ++M GH D+ TY +L++A+ K+ A LL +M+
Sbjct: 198 NSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMK 257
Query: 443 KSCL----------------VQNLSCEMVVSERFSEVADKSASFTDTSSL-----MDKSD 481
++ + + N+ + + E + + FT T + + D
Sbjct: 258 ENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRID 317
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
A EM+ E +N+ I F K + D LK++ M P V T+ ++
Sbjct: 318 EAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTII 377
Query: 542 YGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
+ E ++ ++ +R SG+ + S Y L+ F + E+ M ++ M +
Sbjct: 378 --KALFESKSRVSEVFSWFERMKGSGI-SPSPFTYSILIDGFCKTNRIEKAMMLLEEMDE 434
Query: 602 QN 603
+
Sbjct: 435 KG 436
>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 106/270 (39%), Gaps = 30/270 (11%)
Query: 368 LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK 427
++K+E + L S +I L +LG +E A + G+ + ++++AY +
Sbjct: 65 FAVKRERKKNEQGKLASAMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGR 124
Query: 428 VKMFREAEALLKQMRKSCLVQNLSCEMVVSE----------RFSEVADK---------SA 468
EA + M+ L NL V + R E+ D+
Sbjct: 125 SGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRI 184
Query: 469 SFTDTSSLMDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+F ++ K L A SL EM I+ N+ + CKG + A +I M
Sbjct: 185 TFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEM 244
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNF 583
I P V T+ ++ G++ D L+ ++K L +S D Y TLL +
Sbjct: 245 PAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMK------FLGISLDRVSYNTLLSIY 298
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ G FE M+V M+ + D + Y +
Sbjct: 299 AKLGRFEEAMDVCREMENSGIRKDVVTYNA 328
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 121/291 (41%), Gaps = 29/291 (9%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF-LEAAHDILD 404
A + +I+ Y + G +E + S+K T + VIDA + G + +I D
Sbjct: 114 AFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTY-NAVIDACGKGGVEFKRVLEIFD 172
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL---------SCEM- 454
+M G D T+ SLL K ++ A +L +M + Q++ C+
Sbjct: 173 EMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGG 232
Query: 455 ---VVSERFSEVADKS--------ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ E SE+ K+ ++ D + + D A +L EM+ N
Sbjct: 233 QLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYN 292
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-R 562
+ + + K +A+ + R M+ IR V T+ L+ G+ Y + ++ ++K R
Sbjct: 293 TLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKAR 352
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++ +L Y TL+ + +GG + M+V KK + D ++Y +
Sbjct: 353 HVSPNLLT-----YSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSA 398
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 87/201 (43%), Gaps = 29/201 (14%)
Query: 348 AKLINGYKKHGK-------NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAH 400
+ +I+GY K G+ +E+ +L +S+ + ++ ++ +LG E A
Sbjct: 257 STMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYN--------TLLSIYAKLGRFEEAM 308
Query: 401 DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERF 460
D+ +ME +G D TY +LL Y K + + ++M+ +++S ++
Sbjct: 309 DVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMK----ARHVSPNLLTYSTL 364
Query: 461 SEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALK 520
+V K + + A + +E ++ + + ++ I CK ++ A+
Sbjct: 365 IDVYSKGGLYRE----------AMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVS 414
Query: 521 IYRRMQEMKIRPTVETFYYLV 541
+ M + IRP V T+ ++
Sbjct: 415 LLDEMTKEGIRPNVVTYNSII 435
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 18/228 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++DA+ + G L+ A +I+ +M + TY +++ Y K +A L +M+
Sbjct: 224 LLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMK--- 280
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+S + V + K F + A + +EM + N+
Sbjct: 281 -FLGISLDRVSYNTLLSIYAKLGRFEE----------AMDVCREMENSGIRKDVVTYNAL 329
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
+ + K K++ M+ + P + T+ L+ +S +YR+ D+ R +
Sbjct: 330 LGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAM----DVFREFK 385
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
L LY L+ + G E + ++ M K+ + + + Y S
Sbjct: 386 KAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNS 433
>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
Length = 382
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 25/232 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAG--HPMDSTTYKSLLTAYYKVKMFREAEALLKQM 441
+ +I+ L +LG ++AA D+ M AG P ++ TY +L+ K A A++ +
Sbjct: 50 TTLINGLCKLGRVDAAFDLFRKMVAAGGCRP-NAFTYNALVDGLCKQDRLDAARAVIAEA 108
Query: 442 RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYK 501
RK ++ + ++V +A F + + D A + +M EE + T+
Sbjct: 109 RK----RDFAPDVVTYNTL-----MAALFQ-----LGRVDEALATFTQMTEEGYVPTLVS 154
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
N+ I C+ + + DAL+++ M + P + T+ ++ G + + L +
Sbjct: 155 FNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQL---LD 211
Query: 562 RNIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
R + G DL Y L+L F G + + ++ M Q D + Y
Sbjct: 212 RMVSEG---CRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTY 260
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 17/165 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S VID L + L+ A +LD M G D Y L+ + A LL++M
Sbjct: 191 SVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVS 250
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ ++ VV ++ +V + D A + +E+ + +
Sbjct: 251 QGCIPDVVTYTVVIDKLCKVG--------------RVDDAHEIFRELVANKCSPNVVTYS 296
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548
+ I +C+ + + K+ M+EM RP V T+ +++G S ++
Sbjct: 297 ALIGGYCRASRVDEGGKV---MREMACRPNVVTYNTMIWGLSMVD 338
>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
Length = 795
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 114/267 (42%), Gaps = 25/267 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEH---HSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
++NG K GK E + +++ + F +TL ID+L + G + A + M
Sbjct: 128 IMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATL----IDSLFKEGNVAEAFVLQGRM 183
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ G D Y +L+ +K M AE + + + + LV N +S + D
Sbjct: 184 VVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVT-------YSALIDG 236
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
D + E L+QEM E+ + +S + + K ++ +A+ + R+M
Sbjct: 237 HCKLGDVNK-------GELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMV 289
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
+ I P V + L+ G+ + R I + D+ + ++S L + + ++ + N +
Sbjct: 290 QRNILPNVFVYGTLIDGYFKADQ-RGIAL---DLFKEMKSRGLEENNFVIDSFVNNLKRS 345
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKS 613
G E E+ M + + D++ Y S
Sbjct: 346 GRMEEADELFKDMMSRGLLPDRVNYTS 372
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 27/218 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDM 406
+IN Y K G LL E S+G S C+ ++ L G +E D+L+DM
Sbjct: 442 MINAYCKEGNLGNALKLL----NEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDM 497
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALL---KQMRKSCLVQNLSCEMVVSERFSEV 463
+ G TT+K++L A K R A+ +L Q+ + +LS + F +
Sbjct: 498 LVMGFHPTPTTHKAVLDASSKS---RRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRL 554
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
++ ++ L + ++M + L+ I N+ I+ +C + A ++
Sbjct: 555 G-----------MIRRATL---VFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHS 600
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
+M + P VET+ L+ G S+ + ++ L +K
Sbjct: 601 QMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMK 638
>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
Length = 548
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 98/255 (38%), Gaps = 37/255 (14%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID+L + + A D ++E G + TY +L+ + +A LL M K
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255
Query: 446 LVQNLSC-------------EMVVSERFSEVADKS--------ASFTDTSSLMDKSDLAE 484
+ N+ + E F E+ S +S + L D+ D A
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEAN 315
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ M + L+ + N+ I FCK K + D +K++R M + + T+ L+ G
Sbjct: 316 QMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375
Query: 545 SSLEMYRDITILWGDIKRNIE----SGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGY 598
GD+ + E +S D+ Y LL G E+ + +
Sbjct: 376 FQA----------GDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED 425
Query: 599 MKKQNMYVDKLMYKS 613
M+K+ M +D + Y +
Sbjct: 426 MQKREMDLDIVTYTT 440
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A SL+ +M E I N+ I CK K + DA ++ ++ IRP V T+ LV
Sbjct: 174 AVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVN 233
Query: 543 GHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
G + + D L D IK+ I V+ Y LL F++ G E+ M +
Sbjct: 234 GLCNSSRWSDAARLLSDMIKKKITPNVIT-----YSALLDAFVKNGKVLEAKELFEEMVR 288
Query: 602 QNMYVDKLMYKS 613
++ D + Y S
Sbjct: 289 MSIDPDIVTYSS 300
>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 527
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID +LG + +A D+L +M G P D TY SLL A K + +A AL +M++
Sbjct: 329 SSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKE 388
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ N +++ A D + A+ L Q + + ++ N
Sbjct: 389 RGIQPN---------KYTYTA-----LIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYN 434
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
I CK M+ +AL + +M+E P TF ++
Sbjct: 435 VMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIII 472
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 90/221 (40%), Gaps = 22/221 (9%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
A L+NG K G+ + LL + ++ + + + +ID L + + A+D+ +M+
Sbjct: 119 ATLLNGLCKIGETRS-ALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMD 177
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM----------RKSCLVQNLSCEMVVS 457
G + TY +L+ + EA LL +M + L+ L E V
Sbjct: 178 ARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVK 237
Query: 458 ERFSEVADKS-----ASFTDTSSLMDKSDL------AESLIQEMREEAALSTIYKLNSSI 506
E + +A + + ++LMD L A+ + M ++ +Y N I
Sbjct: 238 EAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMI 297
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL 547
CK K + +A+ + R + + P T+ L+ G L
Sbjct: 298 DRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKL 338
>gi|410110145|gb|AFV61152.1| pentatricopeptide repeat-containing protein 123, partial [Nashia
inaguensis]
Length = 433
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 124/268 (46%), Gaps = 23/268 (8%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ SWL ++ G+ L S++I+ +L A I +
Sbjct: 16 STLITHFGKEGLFDAAXSWL--QKMEQDQVPGDLILYSNLIELSXKLCDYSKAISIFSRL 73
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ +G D Y +++ + K K+FREA +L+ +M+ + ++ N + + + E
Sbjct: 74 KRSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE---- 129
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ F + A S+ EMRE L + N I + + M +A K++ M+
Sbjct: 130 NKKFLE----------ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 179
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQ 585
+M I P+V ++ L+ + E++ + L+ ++R NIE V+ Y ++++ + +
Sbjct: 180 KMGIEPSVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YNSMMMIYGK 234
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ +I M+ + + + + Y +
Sbjct: 235 TLEHEKANNLIQEMQSRGIEPNSITYST 262
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 108/257 (42%), Gaps = 28/257 (10%)
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
D+M D TY +L+T + K +F A + L++M + + +L + E ++
Sbjct: 1 DEMRQRALSPDRYTYSTLITHFGKEGLFDAAXSWLQKMEQDQVPGDLILYSNLIELSXKL 60
Query: 464 ADKSASFTDTSSL------------------MDKSDL---AESLIQEMREEAALSTIYKL 502
D S + + S L K+ L A SLI EM+ +
Sbjct: 61 CDYSKAISIFSRLKRSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSY 120
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIK 561
++ + + + K +AL ++ M+E+K + T ++ + L M ++ + WG K
Sbjct: 121 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKH 621
IE V++ Y TLL + F + + M+++N+ + + Y S + + K
Sbjct: 181 MGIEPSVVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKT 235
Query: 622 LYRRLKVSNARTEAQSK 638
L K +N E QS+
Sbjct: 236 LEHE-KANNLIQEMQSR 251
>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
Length = 690
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 124/288 (43%), Gaps = 28/288 (9%)
Query: 350 LINGYKKHGKNSE-LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
+++G K G+ E L+++ + H + + +IDA ++G + A+++++ ME
Sbjct: 215 VVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMEN 274
Query: 409 AGHPMDSTTYKSLLTAYYK-------VKMFREAEALLKQMRKSCLV-----------QNL 450
G P + T +++ + ++ FRE + + + + + N+
Sbjct: 275 EGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNV 334
Query: 451 SCEM-VVSERFSE--VADKSASFTDTSSLMDKSDL--AESLIQEMREEAALSTIYKLNSS 505
M + E+ SE D FT S L L A S+ M+E N
Sbjct: 335 GMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNIL 394
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I FC+ K + +A ++ + M+E+ IRP V T+ L+ G + + L G + I+
Sbjct: 395 IAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKM---ID 451
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G S + TL+ + + G + + ++ M + ++ + ++Y +
Sbjct: 452 DGCQP-SVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNT 498
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/400 (20%), Positives = 153/400 (38%), Gaps = 51/400 (12%)
Query: 169 GAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQR 228
G ++PD + + ++++ + G +++ MS+ + ++ L + + C+
Sbjct: 164 GCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRP-DVVTLNTVVDGLCKS 222
Query: 229 DELKKFKCYIDQL--STPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNP 286
+++ +++Q S Y L+ + +I A EL+ M E +P
Sbjct: 223 GRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMEN--EGVPQN 280
Query: 287 KLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRN--GKLLHSN 344
+ + L G R G L E + + EGK V + G LLH+N
Sbjct: 281 IVTLNTIVGGLCRAG----RTGAAL----EFFREKRTVWPEGKGNAVTYSTLVGALLHTN 332
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
N ++ L K ++ + +I L Q G LE A +
Sbjct: 333 ---------------NVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMAS 377
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS------CLVQNL---SCEM- 454
M+ AG +D+ Y L+ + + K EA LL++M++ C L SC+
Sbjct: 378 SMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAG 437
Query: 455 ---VVSERFSEVADKS--ASFTDTSSLM------DKSDLAESLIQEMREEAALSTIYKLN 503
V E ++ D S +L+ K D A +++ M E N
Sbjct: 438 DFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYN 497
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ I F CK + A++++ M+E + V TF L+ G
Sbjct: 498 TLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKG 537
>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 800
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 33/236 (13%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN---- 449
G ++ A + +M G + TY +L+ + F +A ALL +M+++ + N
Sbjct: 435 GCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTY 494
Query: 450 --LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIY 507
L + V R EV + +++ E + T NS I
Sbjct: 495 NTLINGLCVVGRVCEVGE--------------------MLKRFETEGFVPTAMTYNSIIN 534
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIES 566
F K M+G A +Y++M I P + T+ + G+ + D++ + +
Sbjct: 535 GFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRP 594
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHL 622
+ A Y +L+ F Q G ++V+ M K + + +Y S F+ +K+L
Sbjct: 595 DIAA-----YNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNS-FITGYKNL 644
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 111/267 (41%), Gaps = 23/267 (8%)
Query: 366 LLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY 425
LL +K+ S + T + +I+ L +G + ++L E G + TY S++ +
Sbjct: 478 LLAEMKQNGVSCNDYTY-NTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGF 536
Query: 426 YKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES 485
K M A A+ +QM + N+ SF D DLA
Sbjct: 537 IKAGMMGSAFAVYQQMCAKGIPPNIV--------------TYTSFIDGYCKTSCCDLALK 582
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
++ ++R + I NS I+ FC+ + AL++ M + + P + + + G+
Sbjct: 583 MLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYK 642
Query: 546 SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMY 605
+L+M + L+ ++ I+ G+ + Y TL+ F + G +++ M +
Sbjct: 643 NLKMMEEALRLY---EKMIKEGI-DLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNI 698
Query: 606 VDKLMYKSEFLKHHKHLYRRLKVSNAR 632
D + + + L H L R + +AR
Sbjct: 699 PDHITFTA--LTH--GLCRNGDIDDAR 721
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 416 TTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSS 475
+ Y S +T Y +KM EA L ++M K + + + + + FS+ D + +F
Sbjct: 632 SVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSK--DGNVTF----- 684
Query: 476 LMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVE 535
A L EM + + + + C+ I DA K+ M + IRP V
Sbjct: 685 -------ALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVL 737
Query: 536 TFYYLVYGH 544
+ L+ G+
Sbjct: 738 MYNMLINGY 746
>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 643
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 99/249 (39%), Gaps = 25/249 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI G +E A +LD M+ G DS TY SL++ K EA +L++M++
Sbjct: 277 VIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIG 336
Query: 446 LVQNLSCEMVVSERFSEVADKSASF--------------TDTSSLM-------DKSDLAE 484
L+ + + + D +F T +L+ K D A+
Sbjct: 337 LLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEAD 396
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+I++M + + N I +C+ A ++ M I+PT+ T+ L+Y
Sbjct: 397 GMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVL 456
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
S + L+ I R S L ++ L+ G +R ++ M K+N+
Sbjct: 457 SKRNRMKAADDLFEKIIREGASPDLI----MFNALIDGHCANGNLDRAFALLKEMDKRNI 512
Query: 605 YVDKLMYKS 613
D++ Y +
Sbjct: 513 VPDEVTYNT 521
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 123/312 (39%), Gaps = 29/312 (9%)
Query: 311 LQIMPELLEKDSIL-------KMEG-KQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSE 362
L + P ++ ++++ ++EG + L + +N + + LI+G K GK E
Sbjct: 265 LGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEE 324
Query: 363 LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422
S +L +K E + + +ID G L A D+M +TY L+
Sbjct: 325 ASGILEKMK-EIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLI 383
Query: 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL 482
A + EA+ ++K M S +V + ++ + + +F
Sbjct: 384 HALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAF------------ 431
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
+L EM + T+ S IY K + A ++ ++ P + F L+
Sbjct: 432 --NLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALID 489
Query: 543 GH-SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
GH ++ + R +L KRNI + Y TL+ + G E E++ MK+
Sbjct: 490 GHCANGNLDRAFALLKEMDKRNIVPDEVT-----YNTLMQGRCREGKVEEARELLKEMKR 544
Query: 602 QNMYVDKLMYKS 613
+ + D + Y +
Sbjct: 545 RGIRPDHISYNT 556
>gi|225424625|ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial [Vitis vinifera]
gi|296081374|emb|CBI16807.3| unnamed protein product [Vitis vinifera]
Length = 519
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 28/231 (12%)
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL 446
I L++ + A D M G ++S TY ++ KVK F E LL+ M
Sbjct: 51 IGVLVRQSRFDLAEQYYDRMIPQGFSLNSFTYSRFISGLCKVKNFVLIEKLLEDM----- 105
Query: 447 VQNLSCEMVVSERFSEVADKSAS--FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
+R V D A + + ++ D+A ++Q M E+ I
Sbjct: 106 -----------DRLGYVPDIWAYNIYLNLLCCENQLDVALGVVQTMVEKGREPDIVTYTI 154
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEMYRDITILWGDIK 561
I C+ A++I+R M P + LV G +++ ++T+ G ++
Sbjct: 155 VINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACRALVLGLCHDGKVDLAYELTV--GAMR 212
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
G + S+ +Y +L+ F Q G+ ++ +I +M++ D + Y
Sbjct: 213 -----GRIKFSKSIYNSLINGFCQAGWIDKAQSIISFMRRNGCEPDLVTYN 258
>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 412
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 16/106 (15%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KS 444
+ID L + G LE AH+I +D+ + G+ + TY ++ + +F EA ALL +M+ S
Sbjct: 316 LIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNS 375
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEM 490
C L+ E+++ F D++D AE+L++EM
Sbjct: 376 CFPNALTYEIIIRSLFDN---------------DENDKAENLLREM 406
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 14/156 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+ L + G + A ++D+M G P D TY SLL A K +A ALLK ++
Sbjct: 246 LINGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQG 305
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ N+ ++ + K D A ++ +++ + T+
Sbjct: 306 IRPNMYTYTILIDGLC----KGGRLED----------AHNIFEDLLVKGYNITVNTYTVM 351
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
I+ FC + +AL + +M++ P T+ ++
Sbjct: 352 IHGFCNKGLFDEALALLSKMKDNSCFPNALTYEIII 387
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 21/201 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-- 441
S ++D + + A I M L G + +Y ++ + K+KM EA L ++M
Sbjct: 174 SSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSYNIMINGFCKIKMTDEAMNLFEEMHC 233
Query: 442 RK--------SCLVQNLSCEMVVS---ERFSEVADKS--ASFTDTSSLMD------KSDL 482
RK + L+ L +S + E+ D+ SSL+D + D
Sbjct: 234 RKLIPDVVTYNSLINGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHQVDK 293
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A +L++ ++++ +Y I CKG + DA I+ + TV T+ +++
Sbjct: 294 AIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIH 353
Query: 543 GHSSLEMYRDITILWGDIKRN 563
G + ++ + L +K N
Sbjct: 354 GFCNKGLFDEALALLSKMKDN 374
>gi|255661184|gb|ACU25761.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 426
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 123/268 (45%), Gaps = 23/268 (8%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ +G D Y +++ + K K+FREA +L+ +M+ + ++ N + + E
Sbjct: 71 KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYVE---- 126
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ F + A S+ EMRE L + N I + + M +A K++ M+
Sbjct: 127 NKKFLE----------ALSVFSEMREJKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 176
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQ 585
+M I P V ++ L+ + E++ + L+ ++R NIE V+ Y ++++ + +
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YNSMMMIYGK 231
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ +I M+ + + + + Y +
Sbjct: 232 TLEHEKANNLIQEMQSRGIEPNSITYST 259
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 106/251 (42%), Gaps = 28/251 (11%)
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D TY +L+T + K +F A + L++M + + +L + E ++ D S +
Sbjct: 4 GLSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63
Query: 470 FTDTSSL------------------MDKSDL---AESLIQEMREEAALSTIYKLNSSIYF 508
+ S L K+ L A SLI EM+ + ++ +
Sbjct: 64 ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTM 123
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESG 567
+ + K +AL ++ M+E+K + T ++ + L M ++ + WG K IE
Sbjct: 124 YVENKKFLEALSVFSEMREJKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPN 183
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLK 627
V++ Y TLL + F + + M+++N+ + + Y S + + K L K
Sbjct: 184 VVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE-K 237
Query: 628 VSNARTEAQSK 638
+N E QS+
Sbjct: 238 ANNLIQEMQSR 248
>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
Length = 933
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 119/287 (41%), Gaps = 34/287 (11%)
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL 393
+ RNG LL ++ L+ G + G+ SE L + K + T C+ +ID+L +
Sbjct: 265 MVRNGVLLDV-VTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCT-LIDSLAKA 322
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G + +L +M G MD TY +L+ K E +K + L NLS
Sbjct: 323 GRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDE----VKDTLRFALSDNLSPN 378
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
V + K+ + D AE ++ EM E++ + +S I F K
Sbjct: 379 GVTYTVLIDALCKAHNV----------DEAEQVLLEMEEKSISPNVVTFSSVINGFVKRG 428
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITILWGDIKRNIES 566
++ A + R M+E I P V T+ L+ G ++LE+Y D +L +K
Sbjct: 429 LLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHD--MLCEGVK----- 481
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
V++ + ++L+ Q G E M + + +D + Y +
Sbjct: 482 ----VNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTT 524
>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
Length = 877
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 35/183 (19%)
Query: 389 ALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY-----------YKVKMFREA--- 434
L++ +E A +ILD+M LAG D TY +++ Y Y K+ E
Sbjct: 597 GLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLEL 656
Query: 435 -----EALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD----KSDLAES 485
EALLK KS +Q+ + V+ S +F + L+D + D+ E+
Sbjct: 657 DVFTYEALLKACCKSGRMQSA---LAVTREMSAQNIPRNTFV-YNILIDGWARRGDVWEA 712
Query: 486 --LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK---IRPTVETFYYL 540
L+Q+M++E I+ S I CK GD L+ + +QEM+ ++P V+T+ L
Sbjct: 713 ADLMQQMKQEGVQPDIHTYTSFINACCKA---GDMLRATKTIQEMEALGVKPNVKTYTTL 769
Query: 541 VYG 543
++G
Sbjct: 770 IHG 772
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 101/223 (45%), Gaps = 18/223 (8%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G + A + M + G S Y SL+ AY + EA + +++M++ + +L
Sbjct: 316 GDMHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGVEMSLVTY 375
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
+V F+++ + D S MD+ AESL++EM EE + I ++ + +
Sbjct: 376 SIVVGGFAKIGN-----ADQSCNMDR---AESLVREMEEEGIDAPIDIYHTMMNGYT--- 424
Query: 514 MIGDALK---IYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLA 570
MIG+ K +++R++E P+V ++ L+ ++ + ++ + +ES +
Sbjct: 425 MIGNEEKCLIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKAL----EVSKMMESAGIK 480
Query: 571 VSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ Y L+ FL+ + V + K + D ++Y +
Sbjct: 481 HNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNN 523
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 110/268 (41%), Gaps = 27/268 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD-VIDALIQLGFLEAAHDILDDMEL 408
++NGY G N E ++ KE F S + +I+ ++G + A ++ ME
Sbjct: 419 MMNGYTMIG-NEEKCLIVFKRLKEC-GFAPSVISYGCLINMYTKMGKVSKALEVSKMMES 476
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
AG + TY L+ + K+K + A + + + K L ++ + + F
Sbjct: 477 AGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCG------ 530
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
M D A +++EM+++ T I+ F + + AL+I+ M+
Sbjct: 531 --------MGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRS 582
Query: 529 KIRPTVETFYYLVYG-HSSLEMYRDITILWGDIKRNIESGVLAVSRD--LYETLLLNFLQ 585
PTV TF LV G +M + + IL E + VS D Y T++ +
Sbjct: 583 GCIPTVHTFNALVLGLVEKRQMEKAVEIL-------DEMALAGVSPDEHTYTTIMNGYAA 635
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G + E ++ + + +D Y++
Sbjct: 636 LGDTGKAFEYFTKLRNEGLELDVFTYEA 663
>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 1627
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 32/237 (13%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID + +E A +L++M+ G P Y SL+ A K K + A L +++++
Sbjct: 1400 SILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE 1459
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+C + V+ + K+ D ++ D EM + +Y N
Sbjct: 1460 NCGSSSARVYAVMIKHLG----KAGRLDDAINMFD----------EMNKLGCAPDVYAYN 1505
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITIL 556
+ + + M+ +AL RRMQE P + ++ ++ G H ++EM ++
Sbjct: 1506 ALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMK-- 1563
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + V++ Y T+L G FE +++ M D + Y S
Sbjct: 1564 ----QSTVRPDVVS-----YNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSS 1611
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 105/249 (42%), Gaps = 23/249 (9%)
Query: 358 GKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTT 417
G+ ++ L + E H F ++ S +I A +LG ++A +L++M+ G +
Sbjct: 1198 GQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKI 1257
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477
Y L+ ++K A +L ++MR ++ ++T+ +
Sbjct: 1258 YTMLIALFFKFNDAHGALSLFEEMRHQYCRPDV-----------------FTYTELIRGL 1300
Query: 478 DKS---DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
K+ D A EM+ E +N+ I F K + DA+K+++ M+ ++ P+V
Sbjct: 1301 GKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSV 1360
Query: 535 ETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVME 594
T+ ++ + W +R ESG+ + S Y L+ F + E+ M
Sbjct: 1361 VTYNTIIKALFESKSRASEVPSW--FERMKESGI-SPSSFTYSILIDGFCKTNRMEKAMM 1417
Query: 595 VIGYMKKQN 603
++ M ++
Sbjct: 1418 LLEEMDEKG 1426
>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
Length = 826
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 108/252 (42%), Gaps = 21/252 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+ + K+G+ S LL+ + + H+ + ++ L+ G ++ A + D M
Sbjct: 383 LIHAFSKNGEYVRASELLIEMSERGHTL-DLIAYGALVHGLVVAGEVDVALTVRDKMMER 441
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D+ Y L++ K F A+ LL +M L QN++ + V+ A+
Sbjct: 442 GILPDANIYNVLMSGLCKKGRFPAAKQLLVEM----LDQNVTPDAFVN----------AT 487
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D D A+ L Q E +++ + N+ I +CK M+ DAL ++RM
Sbjct: 488 LVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGV 547
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWG-DIKRNIESGVLAVSRDLYETLLLNFLQGGY 588
P T+ ++ G+ R ++G +K+ + V+ + +L+ F + G
Sbjct: 548 HSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKPNVVT-----FTSLINGFCRNGD 602
Query: 589 FERVMEVIGYMK 600
R +V M+
Sbjct: 603 LNRAEKVFEEMR 614
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 17/197 (8%)
Query: 348 AKLINGYKKHGKNSELSWLL-LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
A L++G+ +HG E L L+I++ + C+ +I + G + A M
Sbjct: 486 ATLVDGFIRHGNLDEAKKLFQLTIERGIDT--SVVECNAMIKGYCKYGMMNDALLCFKRM 543
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
H D TY +++ Y K R A + M K N+ + F D
Sbjct: 544 FNGVHSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGFCRNGDL 603
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ AE + +EMR + I +FCK + A + +M
Sbjct: 604 NR--------------AEKVFEEMRSFGFEPNVVTYTILIGYFCKEGKLTKACFFFEQML 649
Query: 527 EMKIRPTVETFYYLVYG 543
K P TF YLV G
Sbjct: 650 INKCIPNDATFNYLVNG 666
>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
Length = 1013
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 119/287 (41%), Gaps = 34/287 (11%)
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL 393
+ RNG LL ++ L+ G + G+ SE L + K + T C+ +ID+L +
Sbjct: 265 MVRNGVLLDV-VTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCT-LIDSLAKA 322
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G + +L +M G MD TY +L+ K E +K + L NLS
Sbjct: 323 GRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDE----VKDTLRFALSDNLSPN 378
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
V + K+ + D AE ++ EM E++ + +S I F K
Sbjct: 379 GVTYTVLIDALCKAHNV----------DEAEQVLLEMEEKSISPNVVTFSSVINGFVKRG 428
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITILWGDIKRNIES 566
++ A + R M+E I P V T+ L+ G ++LE+Y D +L +K
Sbjct: 429 LLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHD--MLCEGVK----- 481
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
V++ + ++L+ Q G E M + + +D + Y +
Sbjct: 482 ----VNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTT 524
Score = 38.9 bits (89), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 80/220 (36%), Gaps = 28/220 (12%)
Query: 348 AKLINGYKKHG---KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
+ +ING+ K G K +E ++ KE +ID + +AA ++
Sbjct: 418 SSVINGFVKRGLLDKATEYKRMM----KERGINPNVVTYGTLIDGFFKFQGQDAALEVYH 473
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
DM G ++ SL+ + EA AL K S L + + + +
Sbjct: 474 DMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAG 533
Query: 465 DKSASFTDTSSLMDKSDL---------------------AESLIQEMREEAALSTIYKLN 503
D +F LMD++ L A+S + EMR N
Sbjct: 534 DMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYN 593
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ I C+ ALK+ M+ I+P + T+ LV G
Sbjct: 594 TMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAG 633
>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Glycine max]
Length = 642
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 90/439 (20%), Positives = 170/439 (38%), Gaps = 85/439 (19%)
Query: 157 DVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSII 216
+ + H+ A KS I P+ + FNLV+ A R G K + + D ++
Sbjct: 153 EFYNHVVASKSLN---IHPNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYS 209
Query: 217 ILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDM 276
L +H + C+ + + + +D++ + L+S K D+ A +L+ +M
Sbjct: 210 TL--MHGL-CKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNM 266
Query: 277 NRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFR 336
+ +PN ++ +A L G KL+ LL +
Sbjct: 267 -FLKGCVPN-EVTYNALVHGLCLKG--------KLEKAVSLLNQ--------------MV 302
Query: 337 NGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGE-------STLC------ 383
+ K + ++ LING+ G+ S+ + +L+S++ H E S LC
Sbjct: 303 SNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFN 362
Query: 384 ---------------------SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422
S +ID L + G L+ A L +M+ G+ +S TY SL+
Sbjct: 363 QAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLM 422
Query: 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL 482
Y++ +A + K+M + + N C ++ + L
Sbjct: 423 RGYFEAGDSHKAILVWKEMANNNCIHNEVCYSIL----------------INGLCKDGKF 466
Query: 483 AESLI--QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM--QEMKIRPTVETFY 538
E+L+ ++M + +S I+ FC ++ LK++ +M Q ++P V T+
Sbjct: 467 MEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYN 526
Query: 539 YLVYGHS-SLEMYRDITIL 556
L+ ++R I IL
Sbjct: 527 ILLNAFCIQKSIFRAIDIL 545
Score = 42.4 bits (98), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 92/230 (40%), Gaps = 22/230 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI A+ +LG ++ A ++ ++ L D+ TY +L+ K + EA +LL +M+
Sbjct: 176 VIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEG 235
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL--AESLIQEMREEAALSTIYKLN 503
NL V+ S+L K DL A L+ M + + N
Sbjct: 236 TFPNLVAFNVL----------------ISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYN 279
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ ++ C + A+ + +M K P TF L+ G D T + ++
Sbjct: 280 ALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEAR 339
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G + +Y +L+ + G F + ME+ M + + ++Y +
Sbjct: 340 GHRG----NEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSA 385
>gi|414880641|tpg|DAA57772.1| TPA: hypothetical protein ZEAMMB73_835994 [Zea mays]
Length = 728
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 98/220 (44%), Gaps = 23/220 (10%)
Query: 385 DVIDALIQL----GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
DV ALI + G + A I +ME G +++ Y++L+ AY K EAE L +
Sbjct: 348 DVGAALINIFCSDGLKKEALIIQSEMEKRGIASNTSIYETLMKAYCKSNQIEEAEGLFVE 407
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
M++ L + ++ + +S ++++ ESL+ EM++ +
Sbjct: 408 MKEKSLQATTTTYNILMDAYSRRL--------------QTEVVESLLLEMQDLGIRPSAR 453
Query: 501 KLNSSIYFFCK-GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD 559
N I + + KM G A + RM+ I+P ++ L++ +++ ++ ++ D
Sbjct: 454 SYNCLISAYGRQKKMSGKAENAFLRMKRDGIKPLSSSYNALLFAYAANGLHEKAHAIYMD 513
Query: 560 IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
+KR L + + Y LL + G E++ME M
Sbjct: 514 MKRE----GLKPTLETYTALLDTLRRAGDTEKLMETWKTM 549
>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
Length = 554
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/334 (18%), Positives = 136/334 (40%), Gaps = 38/334 (11%)
Query: 306 RCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSW 365
RC + P+L ++++ G L ++ M ++ + + G+ E +
Sbjct: 68 RCSAASRHAPDLRR---LMRLYVTAATAFVARGSLPMAHEVMRGMVAAFGEAGRLPEAAD 124
Query: 366 LLLSIKKEHHSFGESTLCSDVIDALIQLGFLEA----AHDILDDMELAGHPMDSTTYKSL 421
++L ++ H LC + + ++++G A + D M AG D ++++L
Sbjct: 125 MVLEMRS--HGL---PLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRAL 179
Query: 422 LTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSE-----RFSEVAD---------K 466
+ + E +ALL M R + N +C +VV RF +V++
Sbjct: 180 VVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGT 239
Query: 467 SASFTDTSSLMDK------SDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALK 520
+ + ++ +D A +++EM +Y + I CK A +
Sbjct: 240 PPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFR 299
Query: 521 IYRRM-QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETL 579
++ ++ + +P V T+ ++ G+ +L + R +E G L + + Y TL
Sbjct: 300 LFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEML---LVRMVEQG-LKPNTNTYTTL 355
Query: 580 LLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ +GG F+R E++ MK++ + Y +
Sbjct: 356 IGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNA 389
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 15/162 (9%)
Query: 384 SDVIDALIQLGFLEAAHDI-LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
+ +ID L ++G+ E A + L ++ + + + TY ++ Y + AE LL +M
Sbjct: 282 TTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMV 341
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
+ L N + + K SF D A L+ +M++E L IY
Sbjct: 342 EQGLKPNTNTYTTLIGGHC----KGGSF----------DRAFELMNKMKQEGFLPNIYTY 387
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
N+ I FCK I +A K+ R ++ T+ L+ H
Sbjct: 388 NAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEH 429
>gi|297850366|ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
lyrata]
gi|297338906|gb|EFH69323.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
lyrata]
Length = 1490
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 18/208 (8%)
Query: 354 YKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413
Y ++GK+ E L+ ++KE S G T + +I QLG +AA D++ ME G
Sbjct: 257 YCQNGKHEEAVELVEEMEKEGISPGLVTW-NILIGGYNQLGKCDAAMDLMQKMENFGITA 315
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS-----EVADKSA 468
D T+ ++++ M +A + ++M + +V N M S + +
Sbjct: 316 DVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSYLKVINLGSEVH 375
Query: 469 SFTDTSSLMDKSDLAESLI------------QEMREEAALSTIYKLNSSIYFFCKGKMIG 516
S +D + SL+ +++ + +Y NS I +C+ G
Sbjct: 376 SIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCG 435
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGH 544
A +++ RMQ+ +RP + T+ ++ G+
Sbjct: 436 KAYELFTRMQDANVRPNIITWNTMISGY 463
>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62680, mitochondrial; Flags: Precursor
gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 98/255 (38%), Gaps = 37/255 (14%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID+L + + A D ++E G + TY +L+ + +A LL M K
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255
Query: 446 LVQNLSC-------------EMVVSERFSEVADKS--------ASFTDTSSLMDKSDLAE 484
+ N+ + E F E+ S +S + L D+ D A
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 315
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ M + L+ + N+ I FCK K + D +K++R M + + T+ L+ G
Sbjct: 316 QMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375
Query: 545 SSLEMYRDITILWGDIKRNIE----SGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGY 598
GD+ + E +S D+ Y LL G E+ + +
Sbjct: 376 FQA----------GDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED 425
Query: 599 MKKQNMYVDKLMYKS 613
M+K+ M +D + Y +
Sbjct: 426 MQKREMDLDIVTYTT 440
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A SL+ +M E I N+ I CK K + DA ++ ++ IRP V T+ LV
Sbjct: 174 AVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVN 233
Query: 543 GHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
G + + D L D IK+ I V+ Y LL F++ G E+ M +
Sbjct: 234 GLCNSSRWSDAARLLSDMIKKKITPNVIT-----YSALLDAFVKNGKVLEAKELFEEMVR 288
Query: 602 QNMYVDKLMYKS 613
++ D + Y S
Sbjct: 289 MSIDPDIVTYSS 300
>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
Length = 521
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 105/224 (46%), Gaps = 33/224 (14%)
Query: 371 KKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKM 430
K +H+++ + +++A Q G A +I M+ G D+ ++ L+ AY + +
Sbjct: 276 KPDHYAY------NALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGL 329
Query: 431 FREAEALLKQMRKSCLVQNLSCEMVV------------SERFSEVADKSASFTDT---SS 475
+ +AE + K M+ + NL M++ +E ++ + DT +S
Sbjct: 330 YEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNS 389
Query: 476 LMDKSDLA------ESLIQEMREEAALST---IYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
L++ ++ E+L+ +M + ++ T I N+ I + + I A ++++ +
Sbjct: 390 LINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLA 449
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLA 570
+K+ P T+ L+ G++ ++YR T + +K+ +ESG A
Sbjct: 450 RLKLVPDATTWTALMGGYAKKKLYRKCTSI---LKKMLESGCRA 490
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 103/267 (38%), Gaps = 25/267 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LINGY+ G + L + ++K +S G C+ + L A + D+E
Sbjct: 145 LINGYRLAGSFEKAEELFVQMQKRGYSPG-PLACNTFLHVLEDAKEYRRAEALFRDLEKY 203
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
+ TY ++ Y K +AE L + MR++ N+ +
Sbjct: 204 ECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNI-----------------CT 246
Query: 470 FTDTSSLMDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
FT + + L AE +++E Y N+ + + +G AL+I++ MQ
Sbjct: 247 FTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQ 306
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
P + L+ + +Y D I ++++S + + LL + +
Sbjct: 307 RNGCFPDTVSHNILINAYGRAGLYEDAE----KIFKSMQSAGFSPNLKSNMLLLSAYARA 362
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKS 613
G E E++ M++ D L+Y S
Sbjct: 363 GRVEEAEELVSAMERDGTKPDTLIYNS 389
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 89/182 (48%), Gaps = 22/182 (12%)
Query: 288 LRQDAQKPY--LISIG-SPNLRCGLKLQIMPELLEKDSILKMEGKQELV--LFRNGK--- 339
L +DA+K + + S G SPNL+ + L L ++E +ELV + R+G
Sbjct: 329 LYEDAEKIFKSMQSAGFSPNLKSNMLL-----LSAYARAGRVEEAEELVSAMERDGTKPD 383
Query: 340 -LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCS--DVIDALIQLGFL 396
L++++ LIN Y G++ ++ LL + K + + + +I Q GF+
Sbjct: 384 TLIYNS-----LINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFI 438
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLSCEMV 455
A ++ + D+TT+ +L+ Y K K++R+ ++LK+M +S C ++ ++
Sbjct: 439 PRAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRADAVTARVL 498
Query: 456 VS 457
S
Sbjct: 499 FS 500
>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
Length = 509
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 106/253 (41%), Gaps = 26/253 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
S + LI+G KH ++ E L + + + + I L + G L+ A +
Sbjct: 226 SGSLYSTLIDGLCKHDRHDEARELF---EMAAGDVQDVIVYTSFISGLCKAGKLDEAKAV 282
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ-MRKSCLVQNLSCEMVVS---- 457
M AG D +Y ++ + K EA+ L+ Q M + C+ C ++V
Sbjct: 283 HVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCK 342
Query: 458 -----------ERFSEVADKSASFTDTSSLMD------KSDLAESLIQEMREEAALSTIY 500
ER E D++ S S+++D + D A ++Q+MR + +
Sbjct: 343 SRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVV 402
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS-SLEMYRDITILWGD 559
+ I FCK + +A ++++RM E V + L+ G+ + ++ I ++
Sbjct: 403 TYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEM 462
Query: 560 IKRNIESGVLAVS 572
R I+ V+++S
Sbjct: 463 AGRGIQPNVVSLS 475
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 15/163 (9%)
Query: 382 LCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST-TYKSLLTAYYKVKMFREAEALLKQ 440
+C+ ++D L + +E A IL+ M G S TY +++ K +A +L++
Sbjct: 332 VCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQK 391
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
MR++ V ++ + + F +V + D A L Q M E +
Sbjct: 392 MRRAGCVPDVVTYTAIIDAFCKVG--------------RLDEARELFQRMHERGCALDVV 437
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
N I +C+ + +A+ + M I+P V + +V G
Sbjct: 438 AYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDG 480
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/237 (20%), Positives = 92/237 (38%), Gaps = 24/237 (10%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK----------SCL 446
E H I ++M GH + TY +++ Y K +A +L+++++ S L
Sbjct: 174 EQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTL 233
Query: 447 VQNLSCEMVVSERFSEVADKSA----------SFTDTSSLMDKSDLAESLIQEMREEAAL 496
+ L C+ + E+ + +A SF K D A+++ +M E
Sbjct: 234 IDGL-CKHDRHDEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCA 292
Query: 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
N IY CK + +A ++ + E K P V LV G + ++
Sbjct: 293 PDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVI 352
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++R +E+G A S Y ++ + + V+ M++ D + Y +
Sbjct: 353 ---LERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTA 406
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S VID L + L+ A+ +L M AG D TY +++ A+ KV EA L ++M +
Sbjct: 370 SAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHE 429
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
++ ++ + A K D A ++I+EM + L+
Sbjct: 430 RGCALDVVAYNILIRGYCRAA--------------KVDEAIAMIEEMAGRGIQPNVVSLS 475
Query: 504 SSIYFFCKGKMIGDALKIYRRMQ 526
+ + CK + +A + +M
Sbjct: 476 TIVDGLCKESRVEEARLLMEKMN 498
>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
Length = 816
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 23/186 (12%)
Query: 380 STLCS-------DVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
T+CS VID + G + A D+ +M G P D TY S++ A K +
Sbjct: 214 GTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMD 273
Query: 433 EAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491
+AEA L+QM K L N + ++ ++ T + A + +EMR
Sbjct: 274 KAEAFLRQMVNKGVLPDNWTYNNLIY-----------GYSSTGQWKE----AVRVFKEMR 318
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYR 551
++ L + LN+ + CK I +A ++ M P V ++ ++ G+++
Sbjct: 319 RQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLV 378
Query: 552 DITILW 557
D+T L+
Sbjct: 379 DMTDLF 384
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 146/358 (40%), Gaps = 55/358 (15%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGV----VADAHSIIILAQIHEMNCQR 228
I P FN+++ A G K I M GV V I L +I +M+
Sbjct: 392 IAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMD--- 448
Query: 229 DELKKFKCYIDQLSTP--FAHH--YQQF--YESLLSLHFKFDDIDAAGELILDMNRYREP 282
D ++KF IDQ P +A+H Q F + SLL +I G + LD+ +
Sbjct: 449 DAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG-MRLDIVFFGSI 507
Query: 283 LPN-PKLRQ--DAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILK---MEGKQELVLFR 336
+ N KL + DAQ + +++ + + P+ + + ++ + GK E L
Sbjct: 508 INNLCKLGRVMDAQNIFDLTV---------NVGLHPDAVVYNMLMDGYCLVGKMEKALRV 558
Query: 337 NGKLLHSN-----RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVID 388
++ + L+NGY K G+ E LS+ +E G + L + +ID
Sbjct: 559 FDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEG----LSLFREMLQKGIKPSTILYNIIID 614
Query: 389 ALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL-- 446
L + G A +M +G M+ TY +L +K + F EA L K++R +
Sbjct: 615 GLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKI 674
Query: 447 ----VQNLSCEMVVSERFSEVADKSASFTD--------TSSLMDKSDLAESLIQEMRE 492
+ + M + R E D AS + T S+M + + E L++E +
Sbjct: 675 DIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAED 732
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 24/231 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S V+ AL + ++ A L M G D+ TY +L+ Y ++EA + K+MR+
Sbjct: 260 SSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRR 319
Query: 444 SCLVQNLSCEMVVSERFSEVADKS--ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYK 501
++ ++ VA + S + + D+ +++ + + S
Sbjct: 320 QSILPDV------------VALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIM 367
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
LN + KG ++ D ++ M I P + TF L+ +++ M I++ +++
Sbjct: 368 LNG---YATKGCLV-DMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMR 423
Query: 562 -RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
++ V+ Y T++ + G + ME M Q + DK Y
Sbjct: 424 DHGVKPHVVT-----YMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAY 469
>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Vitis vinifera]
Length = 755
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/406 (20%), Positives = 165/406 (40%), Gaps = 63/406 (15%)
Query: 166 KSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA---HSII----IL 218
K GA IK +N+++ + G + + M + G D +S+I L
Sbjct: 244 KDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKL 303
Query: 219 AQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNR 278
+ E C +++K C D ++ Y +L++ KF+ + A E + +M
Sbjct: 304 GLLDECICIFEQMKDADCDPDVIT----------YNALINCFCKFERMPKAFEFLHEM-- 351
Query: 279 YREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNG 338
+ + KP +++ + + K+ +L+ E + V R
Sbjct: 352 ----------KANGLKPNVVTYST-----------FIDAFCKEGMLQ-EAIKFFVDMRRV 389
Query: 339 KLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEA 398
L + LI+ K G +E L+ I + T + ++D L + G ++
Sbjct: 390 ALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTY-TALLDGLCEEGRMKE 448
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV-- 456
A ++ M AG + TY +L+ + K K A+ +LK+M++ C+ +L +
Sbjct: 449 AEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILW 508
Query: 457 ----SERFSE----VADKSASFTDT-----SSLMD------KSDLAESLIQEMREEAALS 497
R E + + S +T ++LMD ++ A +L++EM + ++
Sbjct: 509 GLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIA 568
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
T + I CK ++ +A+ + RM E+ ++P V + LV G
Sbjct: 569 TEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDG 614
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 104/255 (40%), Gaps = 33/255 (12%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID +LG L+ I + M+ A D TY +L+ + K + +A L +M+
Sbjct: 294 NSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKA 353
Query: 444 SCLVQNLSCEMVVSERFSE----------------VADKSASFTDTSSLMDKSDLAESLI 487
+ L N+ + F + VA FT T SL+D + A +L
Sbjct: 354 NGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYT-SLIDANCKAGNLA 412
Query: 488 QEMR-EEAALSTIYKLNSSIYF-----FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+ ++ E L KLN Y C+ + +A +++R M + P ET+ LV
Sbjct: 413 EALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALV 472
Query: 542 YGH---SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGY 598
+G +E +DI + ++ + LY T+L E +IG
Sbjct: 473 HGFIKAKEMEYAKDIL-------KEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGE 525
Query: 599 MKKQNMYVDKLMYKS 613
+K+ + + ++Y +
Sbjct: 526 IKESGINTNAVIYTT 540
>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
Length = 823
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 20/213 (9%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
S+ A LI+ Y G+ +L + ++K LC + A + G A
Sbjct: 563 SDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLA 622
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462
L+ + GH D + ++++ K A LL+++RK+ +
Sbjct: 623 LNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKA-----------------Q 665
Query: 463 VADKSASFTDTSSLMDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
+ ++ S+ + + AE ++ EMR + N+ +Y + K + DA
Sbjct: 666 LKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAA 725
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+++ M ++RP TF LV +SSL +Y++
Sbjct: 726 RVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKE 758
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 105/237 (44%), Gaps = 37/237 (15%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I A IQ + A + +M+ AG + TY +LL Y K M +EA LL +M +
Sbjct: 290 MITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAG 349
Query: 446 LVQNLSC--EMVVSERFSEVADKSAS--------------FTDTS--SLMDKSDLAESLI 487
+ N+ E++ + + + D++A+ FT + S ++++ E +
Sbjct: 350 ISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKAL 409
Query: 488 Q---EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ EMR+ I N I + + + + D +K+++ MQE P + T+ L+
Sbjct: 410 ETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSF 469
Query: 545 SSLEMYRDITILWGDIKR----------NI------ESGVLAVSRDLYETLLLNFLQ 585
+ M +++ ++ ++KR NI G + S D+Y+ LL LQ
Sbjct: 470 GNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQ 526
Score = 42.7 bits (99), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 61/305 (20%), Positives = 124/305 (40%), Gaps = 29/305 (9%)
Query: 331 ELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG-ESTLCSDVIDA 389
EL+ F G+L+ ++ + + + GK + + I+K H F + ++
Sbjct: 128 ELLEFIAGELVLTDSELVYFVKALGRQGKWKKALEVFEWIRK-HDCFKLRGVATASILSV 186
Query: 390 LIQLGFLEAAHDILDDMEL-AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-----RK 443
L L AA ++ + ++ + +D Y SL++ + + F E L + M R
Sbjct: 187 LGNHEQLPAALELFESLKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRG 246
Query: 444 SCLVQNLSCEMV---------VSERFSEVADKSASFTD------TSSLMDKSDLAESL-- 486
+ + N+ ++ + F E+ D S D ++ + S E+L
Sbjct: 247 NAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRL 306
Query: 487 IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546
QEM+E N+ + + KG M +A ++ M+ I P + T+ L+ ++
Sbjct: 307 FQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYAR 366
Query: 547 LEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYV 606
+ + L K+++ S L Y TL+ F + +E+ +E M+K N
Sbjct: 367 AGLCDEAAAL----KKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTP 422
Query: 607 DKLMY 611
+ + Y
Sbjct: 423 NIVTY 427
>gi|414868449|tpg|DAA47006.1| TPA: hypothetical protein ZEAMMB73_127498 [Zea mays]
Length = 870
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 20/240 (8%)
Query: 376 SFGESTLC-SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKM-FRE 433
S+G + S +I A + G A +L+ M+ AG + +Y +++ A K + R
Sbjct: 239 SYGNTVFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRF 298
Query: 434 AEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE 493
+QM + L + + F+ + A+ + L D A ++ EM
Sbjct: 299 TLGYFRQMLQDGLCPD-------RKTFNSLL---AACSRAGHLED----ARTVFDEMIHL 344
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI 553
+ IY N+ + CK +G AL++ M+ +P V T+ L+ G S LE Y +
Sbjct: 345 GSGRDIYTYNTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEA 404
Query: 554 TILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
L + ++S + + R Y TLL +++ G ++ + V M+K + D + Y S
Sbjct: 405 LKL----REKMKSLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNS 460
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 23/173 (13%)
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL 446
+DA+ + G + A ++ DME + TY +L+ + K++ + EA L ++M KS
Sbjct: 357 VDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLREKM-KSLR 415
Query: 447 VQ-------NLSCEMVVSERFSEVA------DKSASFTDT---SSLMD------KSDLAE 484
+Q L V + ++ E+A +K DT +SL++ + D+
Sbjct: 416 IQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLINGYGKQGRLDMVA 475
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
L+Q+MR + ++ ++ I + K M GDA +Y +E ++ V F
Sbjct: 476 FLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLF 528
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 310 KLQIMPELLEKDSILKMEGKQ---ELVLF-----RNGKLLHSNRAMAKLINGYKKHGKNS 361
KL I + + +S++ GKQ ++V F R + S + LI+ Y K G +
Sbjct: 448 KLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHG 507
Query: 362 ELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSL 421
+ + L K E + L S ID L + G +E A +LD+M G + TY ++
Sbjct: 508 DAFNVYLDFK-ESGLKADVVLFSSFIDTLAKNGLVECALSLLDEMMKMGIKPNVVTYNTI 566
Query: 422 LTAYYKVKMFREAEALLKQM 441
+ A+ K K+F E ++ + M
Sbjct: 567 IDAFGKSKIFTEEDSDIGDM 586
>gi|115529197|dbj|BAF34331.1| pentatricopeptide repeat protein [Physcomitrella patens]
Length = 728
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 113/270 (41%), Gaps = 32/270 (11%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
E L S+V D Q G +E A I+D +E +G + Y S++TAY K ++ +A L+
Sbjct: 135 EKRLISNVADTYGQQGKIEEAERIMDTVEESGMSLGLVGYNSMITAYGKACLYDKAARLV 194
Query: 439 KQMRKSCLVQN---LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAA 495
++MR+ LV + SC + R ++ + + F + L E++ ++
Sbjct: 195 EKMREEDLVPDSITYSCMIGACGRVGKLKEALSWFAEMKRL------------EIKPASS 242
Query: 496 LSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITI 555
N+ I + K K + +++ M++ +P +T V + + +D+T
Sbjct: 243 -----NFNTLISPYGKAKDVEGIVRVITEMKKYGCKPDWQTLDAAVRAYDRAGLIKDVT- 296
Query: 556 LWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS-- 613
+I + Y TLL +L+ + + + M+K M + M +S
Sbjct: 297 ---EILNLLRDAGWVEETGSYGTLLHVYLKCNLPKEALRIFLAMRKAGMAPKEYMCRSLI 353
Query: 614 ------EFLKHHKHLYRRLKVSNARTEAQS 637
E K +++ ++V+ +S
Sbjct: 354 CTFRDAEMFDGAKSVFKEMQVAGVTPSLES 383
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 27/185 (14%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ A + G ++ +IL+ + AG ++ +Y +LL Y K + +EA + MRK+
Sbjct: 282 AVRAYDRAGLIKDVTEILNLLRDAGWVEETGSYGTLLHVYLKCNLPKEALRIFLAMRKAG 341
Query: 446 LV------QNLSCEMVVSERFS---------EVADKSASFTDTSSLMDKSDL------AE 484
+ ++L C +E F +VA + S + +++ + AE
Sbjct: 342 MAPKEYMCRSLICTFRDAEMFDGAKSVFKEMQVAGVTPSLESSCTMIYVYGMNGDVKEAE 401
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
L +R I+ N I + + M A+K+Y+ M+E + P T+ H
Sbjct: 402 GLFHSLRSSVKRLDIFAYNVMINVYMRCDMPEGAIKVYKLMEEDHLLPDAYTY------H 455
Query: 545 SSLEM 549
S L M
Sbjct: 456 SMLRM 460
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ ++DA + G +E D+L ME +G MD +Y L+ Y K M E E L + M++
Sbjct: 594 NSILDAYGKAGQMEKVSDVLARMENSGMRMDLASYNILINTYGKNYMIAEMETLFRTMQE 653
Query: 444 SCLVQN 449
+V +
Sbjct: 654 EGVVPD 659
>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
Length = 447
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 20/198 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++ AL G + AH + M + D TY L+ Y K+ EA++L+K++ K+
Sbjct: 133 LLSALSDSGRMAEAHALFSAMTCSP---DIMTYNVLMDGYCKIGQTYEAQSLMKEILKAG 189
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
N+ ++ + + +DK + A + +M E + N+
Sbjct: 190 YEPNVFTYSIIINCYCK--------------LDKVEEAWEVFMKMIESNCVPNAVTFNTL 235
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I FCK M+ DA+K++ M+++ + T+ T+ L+ SL R D+ +E
Sbjct: 236 IAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLI---DSLCKKRGGVYTAVDLFNKLE 292
Query: 566 SGVLAVSRDLYETLLLNF 583
L + Y +L+ F
Sbjct: 293 GAGLTPTIVTYNSLIQGF 310
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 98/270 (36%), Gaps = 31/270 (11%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+IN Y K K E +W + E + + + +I + G LE A + +ME
Sbjct: 200 IINCYCKLDKVEE-AWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKI 258
Query: 410 GHPMDSTTYKSLLTAYYKVK-MFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G TY +L+ + K + A L ++ + L + + + FSE A+
Sbjct: 259 GCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFSERANDGL 318
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
L+ M E + N I C + DA +++ M
Sbjct: 319 ----------------RLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLF---NGM 359
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588
P V TF +L+ G + + + RNI + A + T++L F + G
Sbjct: 360 ACAPNVTTFNFLIRGLCAQKKVEE--------ARNILDRMTAPDMTTFNTIILAFCKAGA 411
Query: 589 FERVMEVIGYMKKQNMYVDKLMYKSEFLKH 618
EV+ M K Y + Y + L H
Sbjct: 412 MHDAREVMKDMLKHGFYPNT--YTTYALAH 439
>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 456
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 14/156 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+IDAL + G ++ A ++L +M G P D TY SLL + K + +A AL +M++
Sbjct: 268 LIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWG 327
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ N ++ + D L D A+ L Q++ + + N
Sbjct: 328 IQPN-------KYTYTALID---GLCKGGRLKD----AQKLFQDLLVKGCCIDVCTYNVM 373
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
I CK M+ +AL I +M++ P V TF ++
Sbjct: 374 IGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIII 409
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 88/213 (41%), Gaps = 15/213 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
L+NG K G+ + + L + ++ + + + +ID L + + A+D +M
Sbjct: 161 GTLLNGLCKIGE-TRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMN 219
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G + TY +L+ + A +LL +M +++N++ +
Sbjct: 220 ARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEM----ILKNINPNVYTY---------- 265
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
A D K A++L+ EM + + S + FCK + + A ++ +M+E
Sbjct: 266 AILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKE 325
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
I+P T+ L+ G +D L+ D+
Sbjct: 326 WGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDL 358
>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
Length = 836
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 15/194 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+I+GY K K E LL + + S + + +I A G + AA + DDM+
Sbjct: 612 MIDGYCKANKVEEGENLLNELVSKKLEL-NSVVYNSLIRAYCINGNMNAAFRLRDDMKSR 670
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + TY SL+ + + +A+ LL +MRK L+ N+ C + +S++
Sbjct: 671 GVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQ---- 726
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
M+K ++ ++QEM + I FCK +A K+ M E
Sbjct: 727 -------MNKVNI---VLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKG 776
Query: 530 IRPTVETFYYLVYG 543
I P T+ G
Sbjct: 777 ILPDAVTYNAFTNG 790
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 21/182 (11%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ ++ +L++ L+ ++++ D + L G D + +++ A+ K +A L +M
Sbjct: 224 CTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGLFSKME 283
Query: 443 KSCLVQNLSC---------------------EMVVSERFSEVADKSASFTDTSSLMDKSD 481
K + N+ E +V E+ S + F + ++K D
Sbjct: 284 KLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKID 343
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
A +++EM E + N+ I +CK I +ALKI M I P T L+
Sbjct: 344 EANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLI 403
Query: 542 YG 543
G
Sbjct: 404 QG 405
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 112/280 (40%), Gaps = 43/280 (15%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDM 406
ING K K E + +L KE G + + +ID ++G + A I DDM
Sbjct: 332 FINGLIKLEKIDEANCVL----KEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDM 387
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD- 465
G +S T SL+ + K +AE +L++M L N FS V +
Sbjct: 388 LSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPIN-------QGSFSMVINW 440
Query: 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
F ++L + E L++ +R L L + + CK G+A++++ R+
Sbjct: 441 LCLKFRFVTAL---HFIREMLLRNLRPNDGL-----LTTLVSGLCKAGKQGEAVELWCRL 492
Query: 526 QEMKIRPTVETFYYLVYG-------HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYET 578
P + T L++G +L++ RD+ +E G L R Y T
Sbjct: 493 LGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDM----------LERG-LVFDRITYNT 541
Query: 579 LLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKH 618
L+ + G + E+ M K+ + D +Y L H
Sbjct: 542 LISGCCKEGKVKEGFELKEEMVKKGIQPD--IYTFNLLLH 579
>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 829
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 28/269 (10%)
Query: 350 LINGYKKHGKNSELSW-LLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDD 405
+++ Y K G+ SW +L + E S G + CS VI A + G L+ A L +
Sbjct: 256 MLDVYGKMGR----SWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAE 311
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVSERFSEVA 464
++ G+ + TY S+L + K ++ EA ++LK+M +C +++ ++E+A
Sbjct: 312 LKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVT--------YNELA 363
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
A++ L D ++I M + + + I + K DAL+++
Sbjct: 364 ---ATYVRAGFL----DEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSL 416
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
M+++ P V T+ ++ D+ + ++K N A +R + T+L
Sbjct: 417 MKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLN----GCAPNRATWNTMLAVCS 472
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ G V +V+ MK DK + +
Sbjct: 473 EEGKHNYVNKVLREMKNCGFEPDKDTFNT 501
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 91/209 (43%), Gaps = 26/209 (12%)
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL---SCEMVVSER 459
D ++ G+ D S+L+ + + KMF +A +L + + L NL +C M + R
Sbjct: 624 FDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVR 683
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
E AE +++ ++ + N+ I FC+ ++ +A+
Sbjct: 684 EGECWK-----------------AEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAI 726
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDIT-ILWGDIKRNIESGVLAVSRDLYET 578
+ M I+PT+ T+ + G++ +E++ + ++ I+ N L Y+
Sbjct: 727 GVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELT-----YKI 781
Query: 579 LLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
L+ + + G +E M+ + +K+ ++ D
Sbjct: 782 LVDGYCKAGKYEEAMDFVSKIKELDISFD 810
>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
Length = 700
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 25/251 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LING K ++ L++ ++K T + +IDA G LE +L DM+
Sbjct: 410 LINGLCKLEMVTKAEDLVMEMEKSGVDPSVETF-NTLIDAYGTAGQLEKCFTVLSDMQQK 468
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK--- 466
G D ++ S++ A+ K EA A+L M + N + + + E D
Sbjct: 469 GIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQA 528
Query: 467 ------------SASFTDTSSLM------DKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
SAS + L+ + D AE LI +R + + N+ I
Sbjct: 529 LLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISA 588
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIE-- 565
C AL++ + M + IRPT+ T + LV +S D+ L+ + +N+E
Sbjct: 589 CCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPS 648
Query: 566 SGVLAVSRDLY 576
S + + D Y
Sbjct: 649 SSIYGIMVDAY 659
>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
Length = 653
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 99/248 (39%), Gaps = 24/248 (9%)
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
+L+ ++H F + S +ID + G L+ A I +DM +G + Y +++ +
Sbjct: 361 VLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFC 420
Query: 427 KVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL 486
K MF +AE+L+ +M LV+N V T SL + + +L
Sbjct: 421 KKLMFNQAESLIDKM----LVENCPPNTVTFN------------TLIRSLCNCRRVGRAL 464
Query: 487 --IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
EMR N ++ + GDAL++ MQ I ++ T+ +V G
Sbjct: 465 GVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELSLVTYNTVVSGL 524
Query: 545 SSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
+ M R+ G I R I+ + ++ + + G ++G M N
Sbjct: 525 CQMRMGREAMFFVGRMIVRGIQPDAFT-----FTAIIHAYCKEGEVRMAAWILGAMNVVN 579
Query: 604 MYVDKLMY 611
+ L+Y
Sbjct: 580 CGRNILVY 587
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 15/169 (8%)
Query: 376 SFGESTLCSDV-IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREA 434
+ ST+ +V I L +G L+ A +L+DME G ++ TY +L+ + K A
Sbjct: 334 GWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGA 393
Query: 435 EALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEA 494
++ M +S N+ VV V K F AESLI +M E
Sbjct: 394 ISIWNDMTRSGCKPNV----VVYTNMVGVFCKKLMFNQ----------AESLIDKMLVEN 439
Query: 495 ALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
N+ I C + +G AL ++ M+ P T+ L++G
Sbjct: 440 CPPNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHG 488
>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 93/249 (37%), Gaps = 25/249 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++ ++ G L+ A I+ +ME +G D TY L+ AY + A +LK+M +
Sbjct: 332 LLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANN 391
Query: 446 LVQNLSCEMVVSERFSEVADKSASF---------------------TDTSSLMDKSDLAE 484
++ N + + + + SF DT D A
Sbjct: 392 IMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAM 451
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+M E N+ I CK ++ A +++ M E P V TF ++
Sbjct: 452 DTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSF 511
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
E + D+ L G N+ S L + Y TL+ + + G F +E + MK +
Sbjct: 512 GEQERWDDVKTLMG----NMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGL 567
Query: 605 YVDKLMYKS 613
MY +
Sbjct: 568 KPSSTMYNA 576
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 45/234 (19%), Positives = 93/234 (39%), Gaps = 30/234 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID + L+ A D D M G D+ T+ +L+ + K ++ AE L ++M +
Sbjct: 437 MIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKG 496
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
++ ++ F E ++ D ++L+ MR L + +
Sbjct: 497 FSPCVTTFNIMINSFGE--------------QERWDDVKTLMGNMRSLGLLPNVVTYTTL 542
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I + K DA++ M+ ++P+ + L+ ++ G ++ +
Sbjct: 543 IDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQK----------GLSEQAVN 592
Query: 566 SGVLAVSRDLYETLL-LNFLQGGYFE-----RVMEVIGYMKKQNMYVDKLMYKS 613
+ L + L +LL LN L + E V+ YMK+ ++ D + Y +
Sbjct: 593 AFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTT 646
>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 620
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 104/265 (39%), Gaps = 25/265 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI G G S +L S++ +H F S +ID + G L A I +DM +
Sbjct: 312 LIRGLCSVGDLKGASSILNSME-QHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRS 370
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + Y +++ + K MF +A++L+ +M L++N V
Sbjct: 371 GCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKM----LLENCPPNTVTFN----------- 415
Query: 470 FTDTSSLMDKSDLAESL--IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
T SL D + +L EMR + N I+ + GDAL + MQ
Sbjct: 416 -TLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQS 474
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQG 586
I ++ T+ +V G M R+ + G I + I+ + ++ + +
Sbjct: 475 HGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFT-----FSAIIHAYCKE 529
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMY 611
G ++G M N + + L+Y
Sbjct: 530 GEVRMAAWMLGAMNVVNCHRNILVY 554
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 70/175 (40%), Gaps = 36/175 (20%)
Query: 389 ALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK----- 443
AL Q + AA +LD+M G P D TY ++++ K+ EA +L M
Sbjct: 145 ALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMPPVAASY 204
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ +V L E + E FS V+D M L ++I +TI
Sbjct: 205 NAIVLALCREFRMQEVFSVVSD-----------MVGRGLQPNVIT-------YTTI---- 242
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYR 551
+ FCK + A I RM P V TF LV G H +L+M+R
Sbjct: 243 --VDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWR 295
>gi|255661114|gb|ACU25726.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 427
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 81/179 (45%), Gaps = 18/179 (10%)
Query: 378 GESTLCSDVIDALIQL----GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE 433
GE + D+++ + + G L A + + G S TY S+++++ K F+E
Sbjct: 256 GEDSFDIDMVNTYLSIFLAKGKLSLACKVFEIFTKMGVDPVSYTYNSIMSSFVKKGYFKE 315
Query: 434 AEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE 493
A +L M ++ +++ V+ + + M ++DLA +++ ++ +E
Sbjct: 316 AWGVLNAMGETVYPADIATYNVIIQGLGK--------------MGRADLANAVLDKLTKE 361
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
I N+ I K I +A K++++M+E I P V T+ L+ HS +D
Sbjct: 362 GGYLDIVMYNTLINALGKAGRIDEANKLFQQMKESGINPDVVTYNTLIEVHSKAGRLKD 420
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 110/267 (41%), Gaps = 25/267 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + I L LE A ++++ME
Sbjct: 65 LIDGLYKNGRAEAAYTMFLDLKRKGNNFVDGITYXIAIFHLCHEDQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-----SCEMVVSERFSEVA 464
G +D T +LL YK + E L+K +R LV +L + E + S+
Sbjct: 125 GFVVDLVTVTTLLITLYKRGQWDCTERLMKHIRDGNLVPSLLKWKSAMESSMKTPQSKKR 184
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
D + F ++++D +L +S E+ + +SS Y M+ + Y
Sbjct: 185 DFTPMFPSVNNILDILNLTKSADDNKSEDIEQD---EWSSSPYM----DMLANKFTSYSH 237
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEM-----YRDITILWGDIKRN-------IESGVLAVS 572
+ P + + G S ++ Y I + G + + GV VS
Sbjct: 238 HSWKSLFPLAKGVRVMAKGEDSFDIDMVNTYLSIFLAKGKLSLACKVFEIFTKMGVDPVS 297
Query: 573 RDLYETLLLNFLQGGYFERVMEVIGYM 599
Y +++ +F++ GYF+ V+ M
Sbjct: 298 Y-TYNSIMSSFVKKGYFKEAWGVLNAM 323
>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 110/266 (41%), Gaps = 20/266 (7%)
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF-LEA 398
++ S + LIN Y ++G+ LL +K+E S T + VI+A + E
Sbjct: 179 VIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTY-NTVINACARGDLDWEG 237
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE 458
+ +M G D TY +LL+A + EAE + K M + +V ++ + E
Sbjct: 238 LLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVE 297
Query: 459 RFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDA 518
F ++ K + L++EM E L I N I K I +A
Sbjct: 298 TFGKLG--------------KLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEA 343
Query: 519 LKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYET 578
+ ++++MQ P T+ L+ + Y D+ L+ +K + Y
Sbjct: 344 MDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAE----PDATTYNI 399
Query: 579 LLLNFLQGGYFERVMEVIGYMKKQNM 604
L+ F +GGYF+ V+ + + +N+
Sbjct: 400 LIRVFGEGGYFKEVVTLFHDLVDENI 425
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 14/174 (8%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
E T S +++ +LG LE +L +ME G+ D ++Y L+ A+ K+ +EA +
Sbjct: 288 EITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVF 347
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST 498
KQM+ + V N S ++ + K + D L +M+E +A
Sbjct: 348 KQMQAAGCVPNASTYSILLNLYG----KHGRYDDV----------RELFLQMKESSAEPD 393
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
N I F +G + + ++ + + I P +ET+ LV+ ++ D
Sbjct: 394 ATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHED 447
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 59/298 (19%), Positives = 128/298 (42%), Gaps = 29/298 (9%)
Query: 313 IMPELLEKDSIL-----KMEGKQELVLFRN---GKLLHSNRAMAKLINGYKKHGKNSELS 364
+ P+L+ +++L + G + ++F+ G ++ + ++ + K GK +++
Sbjct: 250 VQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVA 309
Query: 365 WLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424
LL ++ E + + + + +I+A +LG ++ A D+ M+ AG +++TY LL
Sbjct: 310 MLLKEMESEGY-LPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNL 368
Query: 425 YYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE 484
Y K + + L QM++S + + ++ F E F + +L DL +
Sbjct: 369 YGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGE----GGYFKEVVTLF--HDLVD 422
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFC-KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
I E + F C KG + DA KI M I P+ + + L+
Sbjct: 423 ENIDPNMETY---------EGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEA 473
Query: 544 HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
+ +Y + + + + + D Y +L+ F +GG ++ ++ M++
Sbjct: 474 YGQAALYDEALVAFNTMNEVGSKSTI----DTYNSLIHTFARGGLYKEFEAILSRMRE 527
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 15/203 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+N Y KHG+ ++ L L +K E + ++T + +I + G+ + + D+
Sbjct: 365 LLNLYGKHGRYDDVRELFLQMK-ESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDE 423
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
+ TY+ L+ A K + +A+ +L M +V + + E + + A
Sbjct: 424 NIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAA----- 478
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
L D++ +A M E + STI NS I+ F +G + + I RM+E
Sbjct: 479 ------LYDEALVA---FNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYG 529
Query: 530 IRPTVETFYYLVYGHSSLEMYRD 552
I ++F ++ G+ Y +
Sbjct: 530 ISRNAKSFSGIIEGYRQSGQYEE 552
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I L + G LE +I D+M G +Y +L+ AY + + + LL++M++
Sbjct: 154 IISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRER 213
Query: 446 LVQNLSCEMVVSERFSEVADKSASFT-DTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
+ N+ ++ V + A D L+ L EMR E + N
Sbjct: 214 VSPNILT-------YNTVINACARGDLDWEGLL-------GLFAEMRHEGVQPDLVTYN- 258
Query: 505 SIYFFCKGKMIGD-ALKIYRRMQEMKIRPTVETFYYLV 541
++ C + +GD A +++ M E I P + T+ Y+V
Sbjct: 259 TLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIV 296
>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
Length = 481
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 106/252 (42%), Gaps = 29/252 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDM-ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM--- 441
VI G ++AA +++ +M E G D TY +L++ + K+ +A + +M
Sbjct: 153 VIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQ 212
Query: 442 ---RKSCLVQNL---------SCEMVVSERFSEVADKSASFTDTSSLM-------DKSDL 482
S ++ N ++ + R V A T +L+ ++
Sbjct: 213 GEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASD 272
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A ++++EM+ ++ N I +CK AL+++ M +R T T+ L+Y
Sbjct: 273 AYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIY 332
Query: 543 GHSSLEMYRDITILWG-DIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
S ++ L+ +K+ I V+ +Y L+ + GG ER E++ M+K
Sbjct: 333 AFSRKGQVQETDRLFKVAVKKGIRPDVV-----MYNALINSHCAGGDMERAFEIMAEMEK 387
Query: 602 QNMYVDKLMYKS 613
+ + D + Y +
Sbjct: 388 KRIPPDDVTYNT 399
>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 19/185 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I AL++ G + A +++DM G +D TY L+ A+ KV + L +QM
Sbjct: 534 NTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIM 593
Query: 444 SCL-VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
L +SC ++++ + K D A +++ + I
Sbjct: 594 DGLGADTISCNIMINGLCK---------------VGKVDNAFEFLRDAINRGFVPDIVTY 638
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
NS + CK I +AL ++ R+Q +RP T+ + M D + + R
Sbjct: 639 NSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFF---YR 695
Query: 563 NIESG 567
IE+G
Sbjct: 696 GIENG 700
Score = 42.7 bits (99), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 56/275 (20%), Positives = 104/275 (37%), Gaps = 61/275 (22%)
Query: 343 SNRAMAKLINGYKKHGKNSE----LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEA 398
+N + LINGY G+ E L+ +++ + F + L + L + G L
Sbjct: 353 NNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNIL----MHGLCKEGSLSF 408
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE 458
A D++++M G + TY L+ K + EA +L +M L N ++ +
Sbjct: 409 ARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTIN---SVIYNC 465
Query: 459 RFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDA 518
+ K +K +A +L+ EM + ++ NS IY CK I +A
Sbjct: 466 LICALCRK-----------EKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEA 514
Query: 519 LKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYET 578
+++ M +L G + N+ Y T
Sbjct: 515 FRLFHNM-----------------------------LLDGAVANNVT----------YNT 535
Query: 579 LLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
L+ L+ G F++ + ++ M + +DK+ Y
Sbjct: 536 LIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNG 570
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 92/237 (38%), Gaps = 32/237 (13%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID + E A +L++M+ G P Y SL+ A K K + A L +++++
Sbjct: 406 SILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKE 465
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+C + V+ + K+ D +L D EM + +Y N
Sbjct: 466 NCGSSSARVYAVMIKHLG----KAGRLDDAVNLFD----------EMNKLGCTPNVYAYN 511
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITIL 556
+ + + M+ +AL RRMQE P + ++ ++ G H ++EM
Sbjct: 512 ALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEML------ 565
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
N++ + Y T+L G FE +++ M D + Y S
Sbjct: 566 -----SNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSS 617
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 14/184 (7%)
Query: 358 GKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTT 417
G+ ++ L + E H F ++ S +I A +LG ++A +L++M+ G +
Sbjct: 204 GQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKI 263
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477
Y L+ ++K+ A L ++MR Q ++ K+ F
Sbjct: 264 YTMLIALFFKLNNVHGALGLFEEMRH----QYCRPDVFTYTELIRGLGKAGRF------- 312
Query: 478 DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
D A + EMR E +N+ I F K + DA+K++ M ++ P+V T+
Sbjct: 313 ---DEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTY 369
Query: 538 YYLV 541
++
Sbjct: 370 NTII 373
>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Brachypodium distachyon]
Length = 663
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 14/171 (8%)
Query: 373 EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
E F ++ C+ +IDA + +++A ++ +M G D+ TY +L+ + V +
Sbjct: 466 EVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTLINGLFSVGYYN 525
Query: 433 EAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE 492
AE L +QM + + N++ ++ +V + T S ++ K
Sbjct: 526 LAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQK------------- 572
Query: 493 EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
E + T+ N+ IY+ K +AL +++ M+ + P TF YL+ G
Sbjct: 573 EVSPDTV-TFNTLIYWLGKRSRAIEALNLFKDMRTRGVEPDTLTFKYLISG 622
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 18/228 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I + G ++ A+ I+ M G D TY LL Y + M +AE L+++M S
Sbjct: 374 LISGFWRAGSIDKAYKIISFMRTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETS- 432
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
V +R+S T L D A + + + E N
Sbjct: 433 --------GVNPDRYS-YNQLLKGLCKTHQL----DKAFAFVSDHMEVGGFCDTVSCNIL 479
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I FCK K + AL++++ M ++ T+ L+ G S+ Y L ++ +
Sbjct: 480 IDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTLINGLFSVGYYN----LAEELFEQML 535
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + + +LY +L + + G+F+R + +M ++ + D + + +
Sbjct: 536 NAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEVSPDTVTFNT 583
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 54/302 (17%), Positives = 114/302 (37%), Gaps = 46/302 (15%)
Query: 342 HSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHD 401
HS A+A L++ G + LS L +K + + S L ++ ++ G ++ +
Sbjct: 121 HSQFAIAYLVSLLFMDGNFALLSEFLGRVKSQGVALHRS-LYRILLSGYVRAGKFDSVIE 179
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
D+M ++G Y + K F E +M +++ F
Sbjct: 180 TFDEMVMSGCREFGVDYNRYIGVLVKNCCFDLVEKYY--------------DMALAKGFC 225
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
+ + ++ +L + L+ +M + I+ N IY+ CK + DAL++
Sbjct: 226 LTPFTYSRWISALCQSNRIELVQELLVDMDKLGCSPDIWACNIYIYYLCKQNRLPDALQM 285
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLA---------- 570
+M+ P V T+ +V G + + + LW + +KR+++ V +
Sbjct: 286 VEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVFSCGALIFGLCK 345
Query: 571 --------------------VSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLM 610
+S +Y L+ F + G ++ ++I +M+ D +
Sbjct: 346 NNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRTNGCEPDIVT 405
Query: 611 YK 612
Y
Sbjct: 406 YN 407
>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
Length = 538
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 113/273 (41%), Gaps = 29/273 (10%)
Query: 321 DSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG-- 378
D LK + + R ++ +SN L++G+++HG EL ++ ++E G
Sbjct: 210 DDALKFMEEMRQMGVRPNEVTYSN-----LVHGFRQHG---ELDRVIRFFEEEKARKGGS 261
Query: 379 -ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
E+ +DAL + G+L+ A ++++ +G D TY L+ + + F + L
Sbjct: 262 LEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLEL 321
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
L+ MR++ + ++V V K F D A L++ M +
Sbjct: 322 LEDMRRN----GVKPDVVTYSTLINVLCKERKFQD----------AFRLLELMEAAGSPP 367
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ NS + CK + + ++Y M + + P V T+ ++ G S M L+
Sbjct: 368 NVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLF 427
Query: 558 GDIKRNIESGVLAVSRDLYETLLLNFLQGGYFE 590
IK + E A Y ++ + + G E
Sbjct: 428 ELIKSSREGPDAAA----YSMVITSLCRAGKLE 456
>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/328 (19%), Positives = 133/328 (40%), Gaps = 61/328 (18%)
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
L+ +A A LI GY + + LL+ +KK + T + V+ + G L+ A
Sbjct: 378 LIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGT-VVKGMCSSGDLDGA 436
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC--EMVVS 457
++I+ +M +G + Y +L+ + + F +A +LK+M++ + ++ C +++
Sbjct: 437 YNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIG 496
Query: 458 ERFSEVADKSASF-----------------TDTSSLMDKSDLA--ESLIQEMREEAALST 498
++ D++ SF S ++ S+ A + ++EMRE L
Sbjct: 497 LSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPN 556
Query: 499 IYKLNSSIYFFC-----------------------------------KGKMIGDALKIYR 523
I +C K + DA +I+R
Sbjct: 557 KVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFR 616
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNF 583
M+ I P V ++ L+ G S L + + ++ ++ +E G L + +Y LL F
Sbjct: 617 EMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM---VEEG-LTPNVIIYNMLLGGF 672
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ G E+ E++ M + ++ + + Y
Sbjct: 673 CRSGEIEKAKELLDEMSVKGLHPNAVTY 700
Score = 45.8 bits (107), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 14/152 (9%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G +E A + D M +G + Y SL+ Y + K R+ LL +M+K +V
Sbjct: 361 GVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIV------ 414
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
+ + V S D D A ++++EM + + I F +
Sbjct: 415 -ISPYTYGTVVKGMCSSGDL-------DGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNS 466
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
GDA+++ + M+E I P + + L+ G S
Sbjct: 467 RFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLS 498
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 18/228 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID L ++ LE A +L +M+ G +D+ TY L+ K + A+ L+ +M
Sbjct: 283 LIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM---- 338
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ ++ + + + V K +L D +A LI + + A+L
Sbjct: 339 VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGM-IASGLIPQAQAYASL--------- 388
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I +C+ K + ++ M++ I + T+ +V G S D+ + +K I
Sbjct: 389 IEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCS---SGDLDGAYNIVKEMIA 445
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
SG + +Y TL+ FLQ F M V+ MK+Q + D Y S
Sbjct: 446 SGCRP-NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 108/261 (41%), Gaps = 22/261 (8%)
Query: 350 LINGYKKHGKNSELSWLL--LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
L+ G+ + G+ + LL +S+K H + T C+ +ID + G L A + D+M+
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPN--AVTYCT-IIDGYCKSGDLAEAFRLFDEMK 724
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
L G DS Y +L+ ++ A + +K C +++ F
Sbjct: 725 LKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVF------- 777
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
F T K+++ L+ + N I + CK + A +++ +MQ
Sbjct: 778 -KFGKTEL---KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN 833
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQG 586
+ PTV T+ L+ G+ + ++ ++ + I IE + +Y ++ FL+
Sbjct: 834 ANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHI-----MYSVIINAFLKE 888
Query: 587 GYFERVMEVIGYMKKQNMYVD 607
G + + ++ M +N D
Sbjct: 889 GMTTKALVLVDQMFAKNAVDD 909
>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
Length = 609
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 103/233 (44%), Gaps = 29/233 (12%)
Query: 335 FRNGKLLHSNRAM-AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL 393
R+GK + + + +ING+ K G+ +L + + + V+D L +
Sbjct: 35 MRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRD 94
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G ++ A +++ +M+L G D T+ +L+T + + EA L K++ S SC
Sbjct: 95 GKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTS------SCR 148
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAES--LIQ--EMREEAALST-IYKLNSSIYF 508
+ D +S + L + + E+ L Q EMRE+ A + + I
Sbjct: 149 L----------DAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDG 198
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDIT 554
FCK + A+K+ M+ K P V T+ L++G +L+++R +T
Sbjct: 199 FCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMT 251
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEM 454
++AA ++D+M P D+ +Y +LL Y ++ EA+ L K+M KSCL ++
Sbjct: 275 VDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTC 334
Query: 455 VVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST-IYKLNSSIYFFCKGK 513
+V F + S L + A L++ M+ A + + + + + + K
Sbjct: 335 LVR-----------GFCNASRLEE----ARFLLENMKTAAGIDPDVVTYSIVVAGYSRAK 379
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+A + + M + P T+ L+ G
Sbjct: 380 RFVEAAEFIQEMIARNVAPNAVTYSSLIDG 409
>gi|255661078|gb|ACU25708.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 429
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 20/198 (10%)
Query: 361 SELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFLEAAHDILDDMELAGHPMD 414
S+ SW S+ + + GE + D+++ + + G L A + + G
Sbjct: 239 SQYSWKPFSLARGVRVTAKGEDSFDLDMVNTYLSIFLAKGKLSVACKLFEIFTNMGVDPA 298
Query: 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTS 474
S TY S+++++ K F+EA ++L M ++ +++ V+ + E
Sbjct: 299 SYTYNSIMSSFVKKGYFKEAWSVLHAMGETVYPADIATYNVIIQGLGE------------ 346
Query: 475 SLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
M ++DLA ++++++ E I N+ I K I +A K++ +M+ I P V
Sbjct: 347 --MGRADLANAVLEKLMNEGGYLDIVMYNTLINALGKAGRIDEANKLFEQMKASGINPDV 404
Query: 535 ETFYYLVYGHSSLEMYRD 552
T+ L+ HS +D
Sbjct: 405 VTYNTLIEVHSKAGRLKD 422
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 12/163 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREDAAYTMFLDLKRKGNNFVDGITYSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERF-----SEVA 464
G +D T SLL Y+ + A L+K +R LV NL ER S+
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWAGKLMKHIRDGNLVPNLLKWQSAMERSMKAPQSKDK 184
Query: 465 DKSASFTDTSSLMD-------KSDLAESLIQEMREEAALSTIY 500
D + F + ++D KSDL + +E ++ S+ Y
Sbjct: 185 DFTPMFPSVNDIVDILNLRKTKSDLGIDIEEETEKDEWSSSPY 227
>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 15/194 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L++G+ K G+ E +L + + G T S ++D + + A I + M
Sbjct: 183 LVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNS-LMDGYFLVKQVNKAKSIFNTMAQL 241
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D +Y L+ + K+KM EA LLK+M ++ N VV+ +S
Sbjct: 242 GVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPN-----VVTY---------SS 287
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D K A L+ EM + I +S + CK + +A+ + +M+
Sbjct: 288 LIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQG 347
Query: 530 IRPTVETFYYLVYG 543
I+P + T+ L+ G
Sbjct: 348 IQPNMYTYTILIKG 361
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 19/194 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHS--FGESTLCSDVIDALIQLGFLEAAHDILDDME 407
LING+ K E LL K+ HH S +ID L + G + A ++D+M
Sbjct: 253 LINGFCKIKMMDEAMELL---KEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMH 309
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G P + TY S+L A K A ALL QM+ + N+ ++ + + S
Sbjct: 310 DRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQ----S 365
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
D A + +++ + +Y I FC + +AL + +M++
Sbjct: 366 GKLED----------ARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMED 415
Query: 528 MKIRPTVETFYYLV 541
P +T+ ++
Sbjct: 416 NGCIPNAKTYEIII 429
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
+G L+ A D+ + M L D T+ L+ + K +EA+ +L M ++Q +
Sbjct: 155 VGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMM----MIQGIKP 210
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
+V S D L+ + + A+S+ M + I + I FCK
Sbjct: 211 GVVTYN----------SLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKI 260
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
KM+ +A+++ + M +I P V T+ L+ G
Sbjct: 261 KMMDEAMELLKEMHHKQIIPNVVTYSSLIDG 291
>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 592
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 90/222 (40%), Gaps = 26/222 (11%)
Query: 345 RAMAKLINGYKKHGKNSE-LSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDI 402
+ LING K GK SE + WL K E ++ + + S V+D L + G + A +
Sbjct: 182 KTYGVLINGLCKMGKTSEAVGWLR---KMEERNWNPNVVVYSTVMDGLCKDGLVSEALGL 238
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERF-- 460
+M G + TY L+ ++EA +LL +M K ++ +L ++ +
Sbjct: 239 CLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCK 298
Query: 461 -----------------SEVAD--KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYK 501
EV D S D L ++ D A + + M L I
Sbjct: 299 EGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVA 358
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
S I+ +CK K I A+ + M ++ P V T+ L+ G
Sbjct: 359 YTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGG 400
>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Brachypodium distachyon]
Length = 675
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 115/306 (37%), Gaps = 47/306 (15%)
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
L + A+ LI+ G+ +E L L + + ++ +++G L+ A
Sbjct: 266 LTPRSNAVTALISALGGAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNA 325
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
+LD+M G D TY L+ AY + + A LLK+M + + S
Sbjct: 326 EQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPS-------SYV 378
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
FS + A F D A ++++EM + N I F K +G A+
Sbjct: 379 FSRIL---AGFRDRGDWQK----AFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAM 431
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGH-------SSLEMY---RDITILWGDIKRNI----- 564
+ RM+E I P V T+ L+ H ++E++ R+ G NI
Sbjct: 432 DAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLL 491
Query: 565 -----------------ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
E G L + Y TL+ + + G F+ +E I MK +
Sbjct: 492 GEQERWVGVETMLSEMKEQG-LVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPS 550
Query: 608 KLMYKS 613
MY +
Sbjct: 551 PTMYHA 556
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 95/203 (46%), Gaps = 24/203 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+IDA + G + A ++ ++M + P +TTY ++ + + + E +L +M++
Sbjct: 452 LIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQG 511
Query: 446 LVQNLSCEMVV------SERFSEV--------ADK-SASFTDTSSLMDK------SDLAE 484
LV N+ + S RF E AD S T +L++ +D A
Sbjct: 512 LVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHAL 571
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
++++ MR + ++ LNS + F + + + +A + + M+E +RP V T+ L+
Sbjct: 572 NVVKAMRADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKAL 631
Query: 545 SSLEMYRDITILWGDIKRNIESG 567
+E + + +++ ++ I SG
Sbjct: 632 IRIEQFDKVPVIYEEM---ITSG 651
>gi|410110089|gb|AFV61124.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
macropoda]
Length = 427
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/297 (19%), Positives = 130/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 20 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 77
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y +++ + K K+FREA +L+ +M+ + ++ N L V +++F
Sbjct: 78 KKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYVENKKF 137
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E + + L+D + A+ L MR+ + N+
Sbjct: 138 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 197
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 198 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMXMIYG-KTLEHEKANNLIQEMQSRG 256
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D++++++ + + +
Sbjct: 257 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYER 308
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 110/261 (42%), Gaps = 28/261 (10%)
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
+ + D+M D TY +L+T + K +F A + L++M + + +L + E
Sbjct: 1 YGLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIEL 60
Query: 460 FSEVADKSASFTDTSSL------------------MDKSDL---AESLIQEMREEAALST 498
++ D S + + S L K+ L A SLI EM+ +
Sbjct: 61 SRKLCDYSKAISIFSRLKKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPN 120
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILW 557
++ + + + K +AL ++ M+E+K + T ++ + L M ++ + W
Sbjct: 121 TXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 180
Query: 558 GDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLK 617
G K IE V++ Y TLL + F + + M+++N+ + + Y S +
Sbjct: 181 GMRKMGIEPNVVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMXMI 235
Query: 618 HHKHLYRRLKVSNARTEAQSK 638
+ K L K +N E QS+
Sbjct: 236 YGKTLEHE-KANNLIQEMQSR 255
>gi|255661068|gb|ACU25703.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 429
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 20/198 (10%)
Query: 361 SELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFLEAAHDILDDMELAGHPMD 414
S+ SW S+ + + GE + D+++ + + G L A + + G
Sbjct: 239 SQYSWKPFSLARGVRVTAKGEDSFDLDMVNTYLSIFLAKGKLSVACKLFEIFTNMGVDPA 298
Query: 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTS 474
S TY S+++++ K F+EA ++L M ++ +++ V+ + E
Sbjct: 299 SYTYNSIMSSFVKKGYFKEAWSVLHAMGETVYPADIATYNVIIQGLGE------------ 346
Query: 475 SLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
M ++DLA ++++++ E I N+ I K I +A K++ +M+ I P V
Sbjct: 347 --MGRADLANAVLEKLMNEGGYLDIVMYNTLINALGKAGRIDEANKLFEQMKASGINPDV 404
Query: 535 ETFYYLVYGHSSLEMYRD 552
T+ L+ HS +D
Sbjct: 405 VTYNTLIEVHSKAGRLKD 422
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREDAAYTMFLDLKRKGNNFVDGITYSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + A L+K +R LV NL
Sbjct: 125 GFVVDLVTVTSLLITLYRQGQWDWAGKLMKHIRDGNLVPNL 165
>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
Length = 538
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 113/273 (41%), Gaps = 29/273 (10%)
Query: 321 DSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG-- 378
D LK + + R ++ +SN L++G+++HG EL ++ ++E G
Sbjct: 210 DDALKFMEEMRQMGVRPNEVTYSN-----LVHGFRQHG---ELDRVIRFFEEEKARKGGS 261
Query: 379 -ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
E+ +DAL + G+L+ A ++++ +G D TY L+ + + F + L
Sbjct: 262 LEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLEL 321
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
L+ MR++ + ++V V K F D A L++ M +
Sbjct: 322 LEDMRRN----GVKPDVVTYSTLINVLCKERKFQD----------AFRLLELMEAAGSPP 367
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ NS + CK + + ++Y M + + P V T+ ++ G S M L+
Sbjct: 368 NVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLF 427
Query: 558 GDIKRNIESGVLAVSRDLYETLLLNFLQGGYFE 590
IK + E A Y ++ + + G E
Sbjct: 428 ELIKSSREGPDAAA----YSMVITSLCRAGKLE 456
>gi|410110109|gb|AFV61134.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
diamantinensis]
Length = 363
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/225 (19%), Positives = 103/225 (45%), Gaps = 24/225 (10%)
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK-SCLVQNLSCEMVVS 457
A ++ +M+ AG ++T+Y +LLT Y + K F EA + +MR+ CL+ +C +++
Sbjct: 40 ARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALXVFSEMREIKCLLDLTTCNIMI- 98
Query: 458 ERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGD 517
D + + A+ L MR+ + N+ + + ++ G+
Sbjct: 99 --------------DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 144
Query: 518 ALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL 575
++ ++R MQ I V T+ ++YG +LE + ++ R IE +
Sbjct: 145 SIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQSRGIEPNSIT----- 198
Query: 576 YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
Y T++ + + G +R + ++ + +D++++++ + + +
Sbjct: 199 YSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVAYER 243
>gi|255661070|gb|ACU25704.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 309
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 20/198 (10%)
Query: 361 SELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFLEAAHDILDDMELAGHPMD 414
S+ SW S+ + + GE + D+++ + + G L A + + G
Sbjct: 119 SQYSWKPFSLARGVRVTAKGEDSFDLDMVNTYLSIFLAKGKLSVACKLFEIFTNMGVDPA 178
Query: 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTS 474
S TY S+++++ K F+EA ++L M ++ +++ V+ + E
Sbjct: 179 SYTYNSIMSSFVKKGYFKEAWSVLHAMGETVYPADIATYNVIIQGLGE------------ 226
Query: 475 SLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
M ++DLA ++++++ E I N+ I K I +A K++ +M+ I P V
Sbjct: 227 --MGRADLANAVLEKLMNEGGYLDIVMYNTLINALGKAGRIDEANKLFEQMKASGINPDV 284
Query: 535 ETFYYLVYGHSSLEMYRD 552
T+ L+ HS +D
Sbjct: 285 VTYNTLIEVHSKAGRLKD 302
>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
Length = 933
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 118/287 (41%), Gaps = 34/287 (11%)
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL 393
+ RNG LL ++ L+ G + G+ SE L + K T C+ +ID+L +
Sbjct: 265 MVRNGVLLDV-VTLSALVAGLCRDGRFSEAYALFREMDKVGAVPNHVTYCT-LIDSLAKA 322
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G + +L +M G MD TY +L+ K E +K + L NLS
Sbjct: 323 GRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDE----VKDTLRFALSDNLSLN 378
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
V + K+ + D AE ++ EM E++ + +S I F K
Sbjct: 379 GVTYTVLIDALCKAHNV----------DEAEQVLLEMEEKSISPNVVTFSSVINGFVKRG 428
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITILWGDIKRNIES 566
++ A + R M+E I P V T+ L+ G ++LE+Y D+ + +E
Sbjct: 429 LLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDM------LCEGVE- 481
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
V++ + ++L+ Q G E M + + +D + Y +
Sbjct: 482 ----VNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTT 524
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 28/220 (12%)
Query: 348 AKLINGYKKHG---KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
+ +ING+ K G K +E ++ KE +ID + +AA ++
Sbjct: 418 SSVINGFVKRGLLDKATEYKRMM----KERGINPNVVTYGTLIDGFFKFQGQDAALEVYH 473
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
DM G ++ SL+ + EA AL K S L + + + +
Sbjct: 474 DMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAG 533
Query: 465 DKSASFTDTSSLMDKSDL---------------------AESLIQEMREEAALSTIYKLN 503
D +F LMD++ L A+S++ EMR N
Sbjct: 534 DMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYN 593
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ I C+ ALK+ M+ I+P + T+ LV G
Sbjct: 594 TMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAG 633
>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
Length = 521
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 105/224 (46%), Gaps = 33/224 (14%)
Query: 371 KKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKM 430
K +H+++ + +++A Q G A +I M+ G D+ ++ L+ AY + +
Sbjct: 276 KPDHYAY------NALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGL 329
Query: 431 FREAEALLKQMRKSCLVQNLSCEMVV------------SERFSEVADKSASFTDT---SS 475
+ +AE + K M+ + NL M++ +E ++ + DT ++
Sbjct: 330 YEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNA 389
Query: 476 LMDKSDLA------ESLIQEMREEAALST---IYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
L++ ++ E+L+ +M + ++ T I N+ I + + I A ++++ +
Sbjct: 390 LINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGLA 449
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLA 570
+K+ P T+ L+ G++ ++YR T + +K+ +ESG A
Sbjct: 450 RLKLVPDATTWTALMGGYAKKKLYRKCTSI---LKKMLESGCRA 490
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 103/267 (38%), Gaps = 25/267 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LINGY+ G + L + ++K +S G C+ + L A + D+E
Sbjct: 145 LINGYRLAGSFEKAEELFVQMQKRGYSPG-PLACNTFLHVLEDAKEYRRAEALFRDLEKY 203
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
+ TY ++ Y K +AE L + MR++ N+ +
Sbjct: 204 ECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNI-----------------CT 246
Query: 470 FTDTSSLMDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
FT + + L AE +++E Y N+ + + +G AL+I++ MQ
Sbjct: 247 FTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQ 306
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
P + L+ + +Y D I ++++S + + LL + +
Sbjct: 307 RNGCFPDTVSHNILINAYGRAGLYEDAE----KIFKSMQSAGFSPNLKSNMLLLSAYARA 362
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKS 613
G E E++ M++ D L+Y +
Sbjct: 363 GRVEEAEELVSAMERDGTKPDTLIYNA 389
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 24/183 (13%)
Query: 288 LRQDAQKPY--LISIG-SPNLRCGL-------KLQIMPELLEKDSILKMEGKQELVLFRN 337
L +DA+K + + S G SPNL+ + + + E E S ++ +G + L N
Sbjct: 329 LYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYN 388
Query: 338 GKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCS--DVIDALIQLGF 395
LIN Y G++ ++ LL + K + + + +I Q GF
Sbjct: 389 A-----------LINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGF 437
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLSCEM 454
+ A ++ + D+TT+ +L+ Y K K++R+ ++LK+M +S C ++ +
Sbjct: 438 IPKAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRADAVTARV 497
Query: 455 VVS 457
+ S
Sbjct: 498 LFS 500
>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 110/266 (41%), Gaps = 20/266 (7%)
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF-LEA 398
++ S + LIN Y ++G+ LL +K+E S T + VI+A + E
Sbjct: 179 VIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTY-NTVINACARGDLDWEG 237
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE 458
+ +M G D TY +LL+A + EAE + K M + +V ++ + E
Sbjct: 238 LLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVE 297
Query: 459 RFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDA 518
F ++ K + L++EM E L I N I K I +A
Sbjct: 298 TFGKLG--------------KLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEA 343
Query: 519 LKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYET 578
+ ++++MQ P T+ L+ + Y D+ L+ +K + Y
Sbjct: 344 MDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAE----PDATTYNI 399
Query: 579 LLLNFLQGGYFERVMEVIGYMKKQNM 604
L+ F +GGYF+ V+ + + +N+
Sbjct: 400 LIRVFGEGGYFKEVVTLFHDLVDENI 425
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 14/174 (8%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
E T S +++ +LG LE +L +ME G+ D ++Y L+ A+ K+ +EA +
Sbjct: 288 EITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVF 347
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST 498
KQM+ + V N S ++ + K + D L +M+E +A
Sbjct: 348 KQMQAAGCVPNASTYSILLNLYG----KHGRYDDV----------RELFLQMKESSAEPD 393
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
N I F +G + + ++ + + I P +ET+ LV+ ++ D
Sbjct: 394 ATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHED 447
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 59/298 (19%), Positives = 128/298 (42%), Gaps = 29/298 (9%)
Query: 313 IMPELLEKDSIL-----KMEGKQELVLFRN---GKLLHSNRAMAKLINGYKKHGKNSELS 364
+ P+L+ +++L + G + ++F+ G ++ + ++ + K GK +++
Sbjct: 250 VQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVA 309
Query: 365 WLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424
LL ++ E + + + + +I+A +LG ++ A D+ M+ AG +++TY LL
Sbjct: 310 MLLKEMESEGY-LPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNL 368
Query: 425 YYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE 484
Y K + + L QM++S + + ++ F E F + +L DL +
Sbjct: 369 YGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGE----GGYFKEVVTLF--HDLVD 422
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFC-KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
I E + F C KG + DA KI M I P+ + + L+
Sbjct: 423 ENIDPNMETY---------EGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEA 473
Query: 544 HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
+ +Y + + + + + D Y +L+ F +GG ++ ++ M++
Sbjct: 474 YGQAALYDEALVAFNTMNEVGSKSTI----DTYNSLIHTFARGGLYKEFEAILSRMRE 527
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 15/203 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+N Y KHG+ ++ L L +K E + ++T + +I + G+ + + D+
Sbjct: 365 LLNLYGKHGRYDDVRELFLQMK-ESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDE 423
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
+ TY+ L+ A K + +A+ +L M +V + + E + + A
Sbjct: 424 NIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAA----- 478
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
L D++ +A M E + STI NS I+ F +G + + I RM+E
Sbjct: 479 ------LYDEALVA---FNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYG 529
Query: 530 IRPTVETFYYLVYGHSSLEMYRD 552
I ++F ++ G+ Y +
Sbjct: 530 ISRNAKSFSGIIEGYRQSGQYEE 552
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 17/158 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I L + G LE +I D+M G +Y +L+ AY + + + LL++M++
Sbjct: 154 IISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRER 213
Query: 446 LVQNLSCEMVVSERFSEVADKSASFT-DTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
+ N+ ++ V + A D L+ L EMR E + N
Sbjct: 214 VSPNILT-------YNTVINACARGDLDWEGLL-------GLFAEMRHEGVQPDLVTYN- 258
Query: 505 SIYFFCKGKMIGD-ALKIYRRMQEMKIRPTVETFYYLV 541
++ C + +GD A +++ M E I P + T+ Y+V
Sbjct: 259 TLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIV 296
>gi|410110091|gb|AFV61125.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
micrantha]
Length = 406
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 116/252 (46%), Gaps = 22/252 (8%)
Query: 363 LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422
LSWL ++ G+ L S++I+ +L A I ++ +G D Y +++
Sbjct: 1 LSWL--QKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMI 58
Query: 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL 482
+ K K+FREA +L+ +M+ + ++ N + + + E + F +
Sbjct: 59 NVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE----NKKFLE---------- 104
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A S+ EMRE L + N I + + M +A K++ M++M I P V ++ L+
Sbjct: 105 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLR 164
Query: 543 GHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
+ E++ + L+ ++R NIE V+ Y ++++ + + E+ +I M+
Sbjct: 165 VYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YNSMIMIYGKTLEHEKANNLIQEMQS 219
Query: 602 QNMYVDKLMYKS 613
+ + + + Y +
Sbjct: 220 RGIEPNSITYST 231
>gi|255661076|gb|ACU25707.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 429
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 20/198 (10%)
Query: 361 SELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFLEAAHDILDDMELAGHPMD 414
S+ SW S+ + + GE + D+++ + + G L A + + G
Sbjct: 239 SQYSWKPFSLARGVRVTAKGEDSFDLDMVNTYLSIFLAKGKLSVACKLFEIFTNMGVDPA 298
Query: 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTS 474
S TY S+++++ K F+EA ++L M ++ +++ V+ + E
Sbjct: 299 SYTYNSIMSSFVKKGYFKEAWSVLHAMGETVYPADIATYNVIIQGLGE------------ 346
Query: 475 SLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
M ++DLA ++++++ E I N+ I K I +A K++ +M+ I P V
Sbjct: 347 --MGRADLANAVLEKLMNEGGYLDIVMYNTLINALGKAGRIDEANKLFEQMKASGINPDV 404
Query: 535 ETFYYLVYGHSSLEMYRD 552
T+ L+ HS +D
Sbjct: 405 VTYNTLIEVHSKAGRLKD 422
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 12/163 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G +E A ++++ME
Sbjct: 65 LIDGLFKNGREDAAYTMFLDLKRKGNNFVDGITYSIVILHLCREGQMEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERF-----SEVA 464
G +D T SLL Y+ + A L+K +R LV NL ER S+
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWAGKLMKHIRDGNLVPNLLKWQSAMERSMKAPQSKXK 184
Query: 465 DKSASFTDTSSLMD-------KSDLAESLIQEMREEAALSTIY 500
D + F + ++D KSDL + +E ++ S+ Y
Sbjct: 185 DFTPMFPSVNDIVDILNLRKTKSDLGIDIEEETEKDEWSSSPY 227
>gi|410110059|gb|AFV61109.1| pentatricopeptide repeat-containing protein 123, partial
[Acantholippia salsoloides]
Length = 433
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/297 (19%), Positives = 129/297 (43%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G ++ LSWL ++ G+ L S++I+ +L A I +
Sbjct: 16 STLITHFGKEGLFDAALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 73
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y + + + K K+FREA +L+ +MR + ++ N L V +++F
Sbjct: 74 KRSGFTPDLVAYNAXINVFGKAKLFREARSLISEMRIAGVMPNTASYSTLLTMYVENKKF 133
Query: 461 SEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSS 505
E + + L+D + A+ L MR+ + N+
Sbjct: 134 LEALSVFSELREMKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 193
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++ R
Sbjct: 194 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG-KTLEHEKANNLIQEMQGRG 252
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D++++++ + + +
Sbjct: 253 IEPNSIT-----YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 304
Score = 42.4 bits (98), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 28/257 (10%)
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
D+M D TY +L+T + K +F A + L++M + + +L + E ++
Sbjct: 1 DEMRDRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60
Query: 464 ADKSASFTDTSSL------------------MDKSDL---AESLIQEMREEAALSTIYKL 502
D S + + S L K+ L A SLI EMR +
Sbjct: 61 CDYSKAISIFSRLKRSGFTPDLVAYNAXINVFGKAKLFREARSLISEMRIAGVMPNTASY 120
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIK 561
++ + + + K +AL ++ ++EMK + T ++ + L M ++ + WG K
Sbjct: 121 STLLTMYVENKKFLEALSVFSELREMKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKH 621
IE V++ Y TLL + F + + M+++N+ + + Y S + + K
Sbjct: 181 MGIEPNVVS-----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKT 235
Query: 622 LYRRLKVSNARTEAQSK 638
L K +N E Q +
Sbjct: 236 LEHE-KANNLIQEMQGR 251
>gi|255661216|gb|ACU25777.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 426
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 123/268 (45%), Gaps = 23/268 (8%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G + LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDDALSWL--QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ +G D Y S++ + K K+F+EA +L+ +MR + ++ + + + E
Sbjct: 71 KRSGITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTILTMYVE---- 126
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ F + A S+ +EMRE L + N I + + M +A +++ M+
Sbjct: 127 NHKFLE----------ALSVFREMREINCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMR 176
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQ 585
+M I P V ++ L+ + E++ + L+ ++R NIE V+ Y T+++ + +
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YNTMMMIYGK 231
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E+ +I M+ + + + + Y +
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNAITYST 259
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 105/247 (42%), Gaps = 28/247 (11%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKS------CLVQNL----------SCEMVVS 457
D TY +L+T + K +F +A + L++M + L NL S + +
Sbjct: 8 DRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67
Query: 458 ERF--SEVADKSASFTDTSSLMDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
R S + ++ ++ K+ L A SLI EMR + ++ + + +
Sbjct: 68 SRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTILTMYVEN 127
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDIT-ILWGDIKRNIESGVLAV 571
+AL ++R M+E+ + T ++ + L+M ++ + W K IE V++
Sbjct: 128 HKFLEALSVFREMREINCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVS- 186
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
Y TLL + F + + M+++N+ + + Y + + + K L K +N
Sbjct: 187 ----YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHE-KANNL 241
Query: 632 RTEAQSK 638
E Q++
Sbjct: 242 IQEMQNR 248
>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 643
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 98/248 (39%), Gaps = 24/248 (9%)
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
+L+ ++H F S +ID + G L A I +DM +G + Y +++ +
Sbjct: 351 ILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFC 410
Query: 427 KVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL 486
K MF +A++L+ +M L++N V T SL D + +L
Sbjct: 411 KKLMFNQAKSLIDKM----LLENCPPNTVTFN------------TLIRSLCDCRRVGRAL 454
Query: 487 --IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
EMR + N I+ + GDAL + MQ I ++ T+ +V G
Sbjct: 455 GVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGL 514
Query: 545 SSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
M R+ + G I + I+ + ++ + + G ++G M N
Sbjct: 515 CQTRMSREAMVFVGKMIVQGIQPNAFT-----FSAIIHAYCKEGEVRMAAWMLGAMNVVN 569
Query: 604 MYVDKLMY 611
+ + L+Y
Sbjct: 570 CHRNILVY 577
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 67/178 (37%), Gaps = 36/178 (20%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK-- 443
++ AL Q + AA +LD+M G P D TY ++++ K+ EA +L M
Sbjct: 165 LVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMPPVA 224
Query: 444 ---SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
+ +V L E + E FS V+D M +
Sbjct: 225 ASYNAIVLALCREFRMQEVFSVVSD------------------------MVGRGLQPNVI 260
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYR 551
+ + FCK + A I RM P V TF LV G H +L+M+R
Sbjct: 261 TYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWR 318
>gi|255661074|gb|ACU25706.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 429
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 20/198 (10%)
Query: 361 SELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFLEAAHDILDDMELAGHPMD 414
S+ SW S+ + + GE + D+++ + + G L A + + G
Sbjct: 239 SQYSWKPFSLARGVRVTAKGEDSFDLDMVNTYLSIFLAKGKLSVACKLFEIFTNMGVDPA 298
Query: 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTS 474
S TY S+++++ K F+EA ++L M ++ +++ V+ + E
Sbjct: 299 SYTYNSIMSSFVKKGYFKEAWSVLHAMGETVYPADIATYNVIIQGLGE------------ 346
Query: 475 SLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
M ++DLA ++++++ E I N+ I K I +A K++ +M+ I P V
Sbjct: 347 --MGRADLANAVLEKLMNEGGYLDIVMYNTLINALGKAGKIDEANKLFEQMKASGINPDV 404
Query: 535 ETFYYLVYGHSSLEMYRD 552
T+ L+ HS +D
Sbjct: 405 VTYNTLIEVHSKAGRLKD 422
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 12/163 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREDAAYTMFLDLKRKGNNFVDGITYSIVILHLCREGXLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERF-----SEVA 464
G +D T SLL Y+ + A L+K +R LV NL ER S+
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWAGKLMKHIRDGNLVPNLLKWQSAMERSMKAPQSKDK 184
Query: 465 DKSASFTDTSSLMD-------KSDLAESLIQEMREEAALSTIY 500
D + F + ++D KSDL + +E ++ S+ Y
Sbjct: 185 DFTPMFPSVNDIVDILNLRKTKSDLGIDIEEETEKDEWSSSPY 227
>gi|410110079|gb|AFV61119.1| pentatricopeptide repeat-containing protein 123, partial [Junellia
succulentifolia]
Length = 382
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/266 (19%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
G+ L S++I+ +L A I ++ +G D Y +++ + K K+FR+A +L
Sbjct: 3 GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFRDARSL 62
Query: 438 LKQMRKSCLVQN------LSCEMVVSERFSEVADKSASFTDTSSLMDKSDL--------- 482
+ +MR + + N L V +++F E A + L+D +
Sbjct: 63 ISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 122
Query: 483 ------AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
A+ L MR+ + N+ + + ++ G+A+ ++R MQ I V T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182
Query: 537 F--YYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVME 594
+ ++YG +LE + ++ R IE + Y T++ + + G +R
Sbjct: 183 YNSMMMIYG-KTLEHEKANNLIQEMQNRGIEPNSIT-----YSTIISIWGKVGKLDRAAM 236
Query: 595 VIGYMKKQNMYVDKLMYKSEFLKHHK 620
+ ++ + +D+++Y++ + + +
Sbjct: 237 LFQKLRSSGVDIDQVLYQTMIVAYER 262
>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
Length = 800
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 33/236 (13%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN---- 449
G ++ A + +M G + TY +L+ + F +A ALL +M+++ + N
Sbjct: 435 GCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTY 494
Query: 450 --LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIY 507
L + V R EV + +++ E + T NS I
Sbjct: 495 NTLINGLCVVGRVCEVGE--------------------MLKRFETEGFVPTAMTYNSIIN 534
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIES 566
F K M+G A +Y++M I P + T+ + G+ + D++ + +
Sbjct: 535 GFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRP 594
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHL 622
+ A Y +L+ F Q G ++V+ M K + + +Y S F+ +K+L
Sbjct: 595 DIAA-----YNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNS-FITGYKNL 644
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 110/267 (41%), Gaps = 23/267 (8%)
Query: 366 LLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY 425
LL +K+ S + T + +I+ L +G + ++L E G + TY S++ +
Sbjct: 478 LLAEMKQNGVSCNDYTY-NTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGF 536
Query: 426 YKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES 485
K M A A+ +QM + N+ SF D DLA
Sbjct: 537 IKAGMMGSAFAVYQQMCAKGIPPNIV--------------TYTSFIDGYCKTSCCDLALK 582
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
++ ++R + I NS IY FC+ + AL++ M + + P + + + G+
Sbjct: 583 MLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYK 642
Query: 546 SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMY 605
+L+M + + ++ I+ G+ + Y TL+ F + G +++ M +
Sbjct: 643 NLKMMEEALRFY---EKMIKEGI-DLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNI 698
Query: 606 VDKLMYKSEFLKHHKHLYRRLKVSNAR 632
D + + + L H L R + +AR
Sbjct: 699 PDHITFTA--LTH--GLCRNGDIDDAR 721
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 97/235 (41%), Gaps = 32/235 (13%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
VID + G + A D+ +M G P D TY S++ A K + +AEA L+QM K
Sbjct: 228 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 287
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
L N + ++ ++ T + A + +EMR + L + L+
Sbjct: 288 VLPNNWTYNNLIY-----------GYSSTGQWKE----AVRVFKEMRRHSILPDVVTLSM 332
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW----GDI 560
+ CK I +A ++ M P V ++ ++ G+++ D+T L+ GD
Sbjct: 333 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD- 391
Query: 561 KRNIESGVLAVSRDLY--ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++ D Y L+ + G ++ M + M+ + D + Y++
Sbjct: 392 ---------GIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 437
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 146/358 (40%), Gaps = 55/358 (15%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS----IIILAQIHEMNCQR 228
I PD FN+++ A G K I M GV D + I L +I +M+
Sbjct: 393 IAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD--- 449
Query: 229 DELKKFKCYIDQLSTPFAHHY----QQF--YESLLSLHFKFDDIDAAGELILDMNRYREP 282
D ++KF IDQ P + Y Q F + SLL +I G + LD+ +
Sbjct: 450 DAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNG-MHLDIVFFSSI 508
Query: 283 LPN-PKLRQ--DAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILK---MEGKQELVLFR 336
+ N KL + DAQ + +++ + + P+ + + ++ + GK E L
Sbjct: 509 INNLCKLGRVMDAQNIFDLTV---------NVGLHPDAVVYNMLMDGYCLVGKMEKALRV 559
Query: 337 NGKLLHSN-----RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVID 388
++ + L+NGY K G+ E LS+ +E G + L S +ID
Sbjct: 560 FDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEG----LSLFREMLQRGIKPSTILYSIIID 615
Query: 389 ALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQ 448
L + G A +M +G MD TY +L +K + F EA L K++R +
Sbjct: 616 GLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKI 675
Query: 449 NLSC------EMVVSERFSEVADKSASFTD--------TSSLMDKSDLAESLIQEMRE 492
N+ M + R E D AS + T S+M + + E L++E +
Sbjct: 676 NIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAED 733
>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
Length = 604
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 124/288 (43%), Gaps = 28/288 (9%)
Query: 350 LINGYKKHGKNSE-LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
+++G K G+ E L+++ + H + + +IDA ++G + A+++++ ME
Sbjct: 215 VVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMEN 274
Query: 409 AGHPMDSTTYKSLLTAYYK-------VKMFREAEALLKQMRKSCLV-----------QNL 450
G P + T +++ + ++ FRE + + + + + N+
Sbjct: 275 EGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNV 334
Query: 451 SCEM-VVSERFSE--VADKSASFTDTSSLMDKSDL--AESLIQEMREEAALSTIYKLNSS 505
M + E+ SE D FT S L L A S+ M+E N
Sbjct: 335 GMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNIL 394
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I FC+ K + +A ++ + M+E+ IRP V T+ L+ G + + L G + I+
Sbjct: 395 IAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKM---ID 451
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G S + TL+ + + G + + ++ M + ++ + ++Y +
Sbjct: 452 DGCQP-SVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNT 498
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 84/400 (21%), Positives = 155/400 (38%), Gaps = 51/400 (12%)
Query: 169 GAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQR 228
G ++PD + + ++++ + G +++ MS+ + ++ L + + C+
Sbjct: 164 GCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRP-DVVTLNTVVDGLCKS 222
Query: 229 DELKKFKCYIDQL--STPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNP 286
+++ +++Q S Y L+ + +I A EL+ M E +P
Sbjct: 223 GRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMEN--EGVPQN 280
Query: 287 KLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRN--GKLLHSN 344
+ + L G R G L+ EK ++ EGK V + G LLH+N
Sbjct: 281 IVTLNTIVGGLCRAG----RTGAALEF---FREKRTVWP-EGKGNAVTYSTLVGALLHTN 332
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
N ++ L K ++ + +I L Q G LE A +
Sbjct: 333 ---------------NVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMAS 377
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS------CLVQNL---SCEM- 454
M+ AG +D+ Y L+ + + K EA LL++M++ C L SC+
Sbjct: 378 SMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAG 437
Query: 455 ---VVSERFSEVADKS--ASFTDTSSLM------DKSDLAESLIQEMREEAALSTIYKLN 503
V E ++ D S +L+ K D A +++ M E N
Sbjct: 438 DFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYN 497
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ I F CK + A++++ M+E + V TF L+ G
Sbjct: 498 TLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKG 537
>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/231 (17%), Positives = 94/231 (40%), Gaps = 20/231 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S V+D + G ++ A +LD+M G +++ Y LL Y + K +LK+M
Sbjct: 137 SVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMES 196
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ + ++ + S D S ES+ E++ + +Y +
Sbjct: 197 GGVEPTVGTYTILVDGLSTAGDISK--------------VESVFDEIKRKNVAGDVYFYS 242
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-R 562
+ I +C+ + A +++ I P T+ L+ G + +L D++ R
Sbjct: 243 AVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLR 302
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + ++ T++ + + G ++ +E+ M++ + +D Y +
Sbjct: 303 GVGHNQI-----IFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNT 348
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 21/205 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
+ R LING+ K G+ E + +LL+ + + + +ID + G ++ A +I
Sbjct: 272 NERTYGALINGFCKIGQ-IEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRHGMVDKALEI 330
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462
ME G +D TY +L +V +A+ LL M ++ + N
Sbjct: 331 KAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNY------------ 378
Query: 463 VADKSASFTDTSSLMDK-SDLAES--LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
S+T S+ K D+ E+ L ++M + + ++ N I + K I +A
Sbjct: 379 -----VSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAE 433
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGH 544
+ + M++ + P V T+ LV+GH
Sbjct: 434 RFKKEMEKKGLVPDVYTYAALVHGH 458
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 15/150 (10%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G + A + DME G TY ++ Y K REAE K+M K LV ++
Sbjct: 392 GDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVY-- 449
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
A+ + K D+A L +EM++ A + + I K
Sbjct: 450 ------------TYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEG 497
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+A + Y M + P +T Y ++ G
Sbjct: 498 RSEEAFQFYDNMLAAGLTPD-DTLYSMLVG 526
>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
Length = 616
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 111/263 (42%), Gaps = 41/263 (15%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAG--HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
VI L + G LE A ++L++M G D TY +L+ A+Y+ REA A ++M+
Sbjct: 138 VISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKA 197
Query: 444 SCLVQN-LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL--IQEMREEAALSTIY 500
+ + + L+C ++V S + D+ E+L + M+ + +
Sbjct: 198 AGINPDVLTCNILV-----------------SGICKDGDVEEALEILDGMKLAGPVPDVI 240
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMY-RDITILWGD 559
NS I+ C + +A +I ++ M P + TF L+ G M R + +L
Sbjct: 241 TYNSIIHALCVAGKVVEAAEI---LKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEM 297
Query: 560 IKRNIESGVLAVSRDLYETLLLNFLQGG----YFERVMEVI--GYMKKQNMY---VDKLM 610
+ NI V+ Y L+ + G F + E++ GY+ Y VD L
Sbjct: 298 CRENILPDVIT-----YTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLC 352
Query: 611 YKSEFLKHHKHLYRRLKVSNART 633
E + HK L + + V RT
Sbjct: 353 KSGEIEEAHK-LVKEMSVRGCRT 374
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 103/263 (39%), Gaps = 19/263 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+NG + G+ +LL I ++ + + + ++D L + G +E AH ++ +M +
Sbjct: 312 LVNGLCRVGQVQVAFYLLEEIVRQGY-IPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVR 370
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G Y SL++ Y + +A +L +M +V L +V + D S S
Sbjct: 371 GCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGL--IKDGSIS 428
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
A SLI ++ + + N+ I CK + +A + M
Sbjct: 429 ------------KAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRG 476
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
P T +V+G + D L ++ R + + V Y +L+ +
Sbjct: 477 CFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVV----YTSLIDGLCKSDRM 532
Query: 590 ERVMEVIGYMKKQNMYVDKLMYK 612
+ V+ M+ Q + +D Y+
Sbjct: 533 DDACMVLDAMRGQGVALDDFAYR 555
Score = 38.9 bits (89), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 35/229 (15%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ ++ + + G +E A +ILD M+LAG D TY S++ A EA +LK M
Sbjct: 207 CNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTM- 265
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
SC S ++V F+ + D F L A +++EM E L +
Sbjct: 266 -SC-----SPDLVT---FNTLLD---GFCKAGML----PRALEVLEEMCRENILPDVITY 309
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITI 555
+ C+ + A + + P V + LV G + ++ +++++
Sbjct: 310 TILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSV 369
Query: 556 LWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
R +GV+ +Y +L+ + + G + E++ M NM
Sbjct: 370 ------RGCRTGVV-----MYSSLVSGYCRAGNVHKAREILAEMVSINM 407
>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 103/256 (40%), Gaps = 30/256 (11%)
Query: 382 LCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM 441
L S +I L +LG +E A + + G+ + +L++AY K F EA + + M
Sbjct: 189 LASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESM 248
Query: 442 RKSCLVQNL--------SCEMV------VSERFSE-----VADKSASFTDTSSLMDKSDL 482
+ S L NL +C V E F E V ++ ++ + L
Sbjct: 249 KVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGL 308
Query: 483 ---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
A +L EM + ++ N+ + CKG + A +I M KI P V T+
Sbjct: 309 WEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYST 368
Query: 540 LVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIG 597
+ G++ D L+ ++K L + D Y TLL + + G FE ++V
Sbjct: 369 MADGYAKAGRLEDALNLYNEMK------FLGIGLDRVSYNTLLSIYAKLGRFEDALKVCK 422
Query: 598 YMKKQNMYVDKLMYKS 613
M + D + Y +
Sbjct: 423 EMGSSGVKKDVVTYNA 438
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 97/219 (44%), Gaps = 20/219 (9%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G EAA ++ ++M G D TY +LL A K A ++ +M ++ N
Sbjct: 307 GLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPN---- 362
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
VV+ +S +AD + L D A +L EM+ N+ + + K
Sbjct: 363 -VVT--YSTMAD---GYAKAGRLED----ALNLYNEMKFLGIGLDRVSYNTLLSIYAKLG 412
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN-IESGVLAVS 572
DALK+ + M ++ V T+ L+ G+ + ++T ++ ++K++ + +L
Sbjct: 413 RFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLT-- 470
Query: 573 RDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
Y TL+ + +G +E MEV K+ + D ++Y
Sbjct: 471 ---YSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLY 506
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 46/236 (19%)
Query: 323 ILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGK-------NSELSWLLLSIKKEHH 375
+L+M GK K+L + + + +GY K G+ +E+ +L + + + +
Sbjct: 351 MLEMPGK---------KILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSY 401
Query: 376 SFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAE 435
+ ++ +LG E A + +M +G D TY +LL Y K F E
Sbjct: 402 N--------TLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVT 453
Query: 436 ALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE--E 493
+ K+M+K + NL +++ + K L E ++ RE +
Sbjct: 454 RVFKEMKKDRVFPNL-----------------LTYSTLIDVYSKGSLYEEAMEVFREFKQ 496
Query: 494 AALSTIYKLNSS-IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV--YGHSS 546
A L L S I CK ++ A+ + M + IRP V T+ ++ +G S+
Sbjct: 497 AGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRST 552
>gi|115448805|ref|NP_001048182.1| Os02g0759500 [Oryza sativa Japonica Group]
gi|46805701|dbj|BAD17102.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47497356|dbj|BAD19395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537713|dbj|BAF10096.1| Os02g0759500 [Oryza sativa Japonica Group]
gi|125583759|gb|EAZ24690.1| hypothetical protein OsJ_08460 [Oryza sativa Japonica Group]
gi|215704115|dbj|BAG92955.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766866|dbj|BAG99094.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 555
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 101/273 (36%), Gaps = 34/273 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS---LLTAYYKVKMFREAEALLKQMR 442
ID+ G + A D+ + M G + S T K+ ++ A K E L+ +MR
Sbjct: 296 AIDSFCSAGLVSEARDLFEFMRTEGSTISSPTAKTYSIMIAALAKAGQMEECFELISEMR 355
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
K + ++S + L+DK D A ++ EM + I
Sbjct: 356 KCGCMPDVS--------------TYKDLIEGMLLVDKLDAAYCVLDEMAKAGFPPDIVTY 401
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL-VYGHSSLEMYRDITILWGDIK 561
N + C + DAL++ RM E P+V T+ L V E R I I K
Sbjct: 402 NCFLKVLCGLQKADDALELCERMIEAHCEPSVHTYNMLMVMFFEMREPDRAINIWIEMDK 461
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKH 621
R V D YET++ G E ++ + + M KL YK K
Sbjct: 462 RGCHRAV-----DTYETMIDGLFDSGRTEDATALLDEVINRGM---KLSYK----KFDAI 509
Query: 622 LYRRLKVSNA----RTEAQSKRLVNVQAFRKWA 650
+ R V N R +R NV R++A
Sbjct: 510 MLRLSAVGNLGAIHRLSEHMRRFYNVAMSRRFA 542
>gi|296089159|emb|CBI38862.3| unnamed protein product [Vitis vinifera]
Length = 353
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
R K+I+GY K + + L ++K+ + TL + +I+ + G LE A +
Sbjct: 105 RDYTKIIDGYGKQNRLQDAENTLSAMKRRGFICDQVTLTA-MINMYSKAGNLELAEKTFE 163
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM 441
+++L GHP+D +Y S++ AY + M + E L+K+M
Sbjct: 164 EIKLLGHPLDKRSYGSMIMAYIRAGMPDQGEILVKEM 200
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 97/235 (41%), Gaps = 32/235 (13%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
VID + G + A D+ +M G P D TY S++ A K + +AEA L+QM K
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 284
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
L N + ++ ++ T + A + +EMR + L + L+
Sbjct: 285 VLPNNWTYNNLIY-----------GYSSTGQWKE----AVRVFKEMRRHSILPDVVTLSM 329
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW----GDI 560
+ CK I +A ++ M P V ++ ++ G+++ D+T L+ GD
Sbjct: 330 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD- 388
Query: 561 KRNIESGVLAVSRDLY--ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++ D Y L+ + G ++ M + M+ + D + Y++
Sbjct: 389 ---------GIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 434
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 145/358 (40%), Gaps = 55/358 (15%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS----IIILAQIHEMNCQR 228
I PD FN+++ A G K I M GV D + I L +I +M+
Sbjct: 390 IAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD--- 446
Query: 229 DELKKFKCYIDQLSTPFAHHY----QQF--YESLLSLHFKFDDIDAAGELILDMNRYREP 282
D ++KF IDQ P + Y Q F + SLL +I G + LD+ +
Sbjct: 447 DAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNG-MHLDIVFFSSI 505
Query: 283 LPN-PKLRQ--DAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILK---MEGKQELVLFR 336
+ N KL + DAQ + +++ + + P+ + ++ + GK E L
Sbjct: 506 INNLCKLGRVMDAQNIFDLTV---------NVGLHPDAVVYSMLMDGYCLVGKMEKALRV 556
Query: 337 NGKLLHSN-----RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVID 388
++ + L+NGY K G+ E LS+ +E G + L S +ID
Sbjct: 557 FDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEG----LSLFREMLQRGIKPSTILYSIIID 612
Query: 389 ALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQ 448
L Q G A +M +G MD TY +L +K + F EA L K++R +
Sbjct: 613 GLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKI 672
Query: 449 NLSC------EMVVSERFSEVADKSASFTD--------TSSLMDKSDLAESLIQEMRE 492
N+ M + R E D AS + T S+M + + E L++E +
Sbjct: 673 NIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAED 730
>gi|225453925|ref|XP_002273719.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g01970-like [Vitis vinifera]
Length = 352
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
R K+I+GY K + + L ++K+ + TL + +I+ + G LE A +
Sbjct: 105 RDYTKIIDGYGKQNRLQDAENTLSAMKRRGFICDQVTLTA-MINMYSKAGNLELAEKTFE 163
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM 441
+++L GHP+D +Y S++ AY + M + E L+K+M
Sbjct: 164 EIKLLGHPLDKRSYGSMIMAYIRAGMPDQGEILVKEM 200
>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
Length = 674
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 113/264 (42%), Gaps = 30/264 (11%)
Query: 356 KHGKNSELSWLLL------SIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++G+ ELS L+ I+ ++++F S +I+ + E A + M+
Sbjct: 154 RNGRQLELSEKLVEEMTGRGIQPDNYTF------STLINCAKRCRQPEEALKWFERMKSE 207
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D TY S++ Y +V EA L ++++ N + V + +A+ A
Sbjct: 208 GIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSV----NWKLDTVT---YGAIANVYAR 260
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D S++ L+QEMR+ + +N+ + K + A K++ M+
Sbjct: 261 AGDYQSIIQ-------LVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSG 313
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
+ PT T LV ++ + Y ++ +K +AV Y +L+ ++GG
Sbjct: 314 VSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAV----YNSLMKACVEGGRV 369
Query: 590 ERVMEVIGYMKKQNMYVDKLMYKS 613
E+ +++ MK+ D L Y++
Sbjct: 370 EQAEDILKEMKRAGCNPDHLTYRT 393
>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 103/256 (40%), Gaps = 30/256 (11%)
Query: 382 LCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM 441
L S +I L +LG +E A + + G+ + +L++AY K F EA + + M
Sbjct: 189 LASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESM 248
Query: 442 RKSCLVQNL--------SCEMV------VSERFSE-----VADKSASFTDTSSLMDKSDL 482
+ S L NL +C V E F E V ++ ++ + L
Sbjct: 249 KVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGL 308
Query: 483 ---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
A +L EM + ++ N+ + CKG + A +I M KI P V T+
Sbjct: 309 WEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYST 368
Query: 540 LVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIG 597
+ G++ D L+ ++K L + D Y TLL + + G FE ++V
Sbjct: 369 MADGYAKAGRLEDALNLYNEMK------FLGIGLDRVSYNTLLSIYAKLGRFEDALKVCK 422
Query: 598 YMKKQNMYVDKLMYKS 613
M + D + Y +
Sbjct: 423 EMGSSGVKKDVVTYNA 438
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 97/219 (44%), Gaps = 20/219 (9%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G EAA ++ ++M G D TY +LL A K A ++ +M ++ N
Sbjct: 307 GLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPN---- 362
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
VV+ +S +AD + L D A +L EM+ N+ + + K
Sbjct: 363 -VVT--YSTMAD---GYAKAGRLED----ALNLYNEMKFLGIGLDRVSYNTLLSIYAKLG 412
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN-IESGVLAVS 572
DALK+ + M ++ V T+ L+ G+ + ++T ++ ++K++ + +L
Sbjct: 413 RFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLT-- 470
Query: 573 RDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
Y TL+ + +G +E MEV K+ + D ++Y
Sbjct: 471 ---YSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLY 506
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 46/236 (19%)
Query: 323 ILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGK-------NSELSWLLLSIKKEHH 375
+L+M GK K+L + + + +GY K G+ +E+ +L + + + +
Sbjct: 351 MLEMPGK---------KILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSY 401
Query: 376 SFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAE 435
+ ++ +LG E A + +M +G D TY +LL Y K F E
Sbjct: 402 N--------TLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVT 453
Query: 436 ALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE--E 493
+ K+M+K + NL +++ + K L E ++ RE +
Sbjct: 454 RVFKEMKKDRVFPNL-----------------LTYSTLIDVYSKGSLYEEAMEVFREFKQ 496
Query: 494 AALSTIYKLNSS-IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV--YGHSS 546
A L L S I CK ++ A+ + M + IRP V T+ ++ +G S+
Sbjct: 497 AGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRST 552
>gi|359490014|ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Vitis vinifera]
Length = 494
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 28/231 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++D + G L ++ +M G DS Y ++ Y M+++A +++++R
Sbjct: 134 LVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIR--- 190
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL--IQEMREEAALSTIYKLN 503
EM VS DK + + +L+E+L ++M+EE I N
Sbjct: 191 -------EMGVS------LDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWN 237
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
S I + CK +G AL+++ +MQE + P + F ++ S L W IKRN
Sbjct: 238 SLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITII---SRLGEQGK----WDVIKRN 290
Query: 564 IESGVL---AVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
E+ S +Y L+ + Q G F+ E I +K + + M+
Sbjct: 291 FENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQPSASMF 341
>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Brachypodium distachyon]
Length = 877
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 84/395 (21%), Positives = 162/395 (41%), Gaps = 38/395 (9%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
PD + F ++H V G + + E M+ ++ DA+ +L I + C++ L
Sbjct: 467 PDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVL--ISGL-CKKKMLPAA 523
Query: 235 KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQK 294
+ I+++ H + Y +L+ + + +D A ++ M Q
Sbjct: 524 RNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFME------------QKGIH 571
Query: 295 PYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGY 354
P ++ + ++ + +M E +E S ++ G+ + LI GY
Sbjct: 572 PDVVGYNA-MIKGYCQFGMMNEAVECMSTMRKVGR-----------IPDEFTYTTLIGGY 619
Query: 355 KKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMD 414
K G S LL + K S +I+ +LG +AA + ME G +
Sbjct: 620 AKQGNISGALSLLCDMMKRRCQ-PNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPN 678
Query: 415 STTYKSLLTAYYKV-KMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK-SASFTD 472
TY L+ + +K K+ R A + C + + +V+ + +A S+ +
Sbjct: 679 VITYTILIGSLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMASIISSHCSS 738
Query: 473 TSSLMDKS---DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
T +L K D+ +L+ + + ++ Y N+ I+ C M+G+AL + +M
Sbjct: 739 TVNLHGKGALLDIFRALVNDRCDPR--NSAY--NAIIFSLCIHNMLGEALDLKNKMANKG 794
Query: 530 IRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRN 563
+P TF L+YG S+ R+ TIL + +R+
Sbjct: 795 YKPDSATFLSLLYGFCSVGKSREWRTILPNEFQRD 829
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 101/247 (40%), Gaps = 18/247 (7%)
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
LLS +E + + VIDAL + A +L M G D+ T+ +L++
Sbjct: 351 LLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLC 410
Query: 427 KVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL 486
+ +EAE LL++ + L NLS + F + + +A +L
Sbjct: 411 QEGRVQEAERLLRETTRWELNPNLSSYTSLIHGF--------------CVRGEVIVASNL 456
Query: 487 IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546
+ EM E + + I+ + +AL + +M ++ P + L+ G
Sbjct: 457 LVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCK 516
Query: 547 LEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYV 606
+M L I+ +E V + +Y TL+ F++ + ++ +M+++ ++
Sbjct: 517 KKMLPAARNL---IEEMLEQNVHP-DKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHP 572
Query: 607 DKLMYKS 613
D + Y +
Sbjct: 573 DVVGYNA 579
>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
Length = 651
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 16/243 (6%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
E+ CS +I G EAA + + Y S++ AY + EALL
Sbjct: 201 EAVFCS-IISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALL 259
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVAD--KSASFTDTSSLMDKS-DLAESL--IQEMREE 493
QM + NL V F+E+ D K SF + ++ ++A++L ++EM +
Sbjct: 260 AQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKVSPQAGNMAKALDILEEMDKH 319
Query: 494 AALST--IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH-SSLEMY 550
IY + Y +G A K++ M ++P + + LV+ + M
Sbjct: 320 GVSPNKMIYAMIMDGY--ARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMD 377
Query: 551 RDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLM 610
+ + +L NIE+ L + + Y ++L +++GG ++ +EV +K + +
Sbjct: 378 KALGVL-----ENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVS 432
Query: 611 YKS 613
Y S
Sbjct: 433 YNS 435
>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
Length = 886
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 96/452 (21%), Positives = 179/452 (39%), Gaps = 66/452 (14%)
Query: 170 AELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGV--VADAHSIII--LAQIHEMN 225
A I+P+ +F ++HA G +E M G+ +SI+I + ++
Sbjct: 279 ARGIEPNAFVFTSLVHAYAVAGDMRGALSCVEEMKSEGIEMTVVTYSILISGYGKTNDAQ 338
Query: 226 CQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPN 285
+ K+ K +D L+ Y +++ H + ++D A EL+ +M
Sbjct: 339 SADNLFKEAKTKLDNLNG-------IIYSNIIHAHCQSGNMDRAEELVREME-------- 383
Query: 286 PKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNR 345
+D I +P + + ++ ++++ E K+ L++F K
Sbjct: 384 ----EDG-------IDAP-------IDVYHSMMHGYTVVQDE-KKCLIVFERLKECGFKP 424
Query: 346 AMAK---LINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAA 399
+ LIN Y K GK + ++I KE S G + S +I+ I L A
Sbjct: 425 TIISYGCLINLYVKVGKVPKA----IAISKEMESHGIKHNNKTYSMLINGFIHLHDFANA 480
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
I +DM +G D Y L+ A+ K+ A + ++M+K + + + E
Sbjct: 481 FSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEG 540
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
F+ D +F DT LM +S A T+ N+ I+ + + A+
Sbjct: 541 FAVAGDMKRAF-DTLDLMRRSGCA-------------PTVMTYNALIHGLVRKHQVEKAV 586
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETL 579
+ +M I P T+ ++ G+++ DI + + ESG L + +YETL
Sbjct: 587 SVLDKMSIAGIAPNEHTYTIIMRGYAA---SGDIGKAFEYFTKIKESG-LKLDVYIYETL 642
Query: 580 LLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
L + G + + V M Q + + +Y
Sbjct: 643 LRACCKSGRMQSALAVTREMSFQKIPRNTFIY 674
>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
Length = 735
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 99/251 (39%), Gaps = 29/251 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID L + G L+ A ++ ++ME+ G D Y +L+ + + + LL+ M K
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310
Query: 444 --------------SCLV--------QNLSCEMVVSERFSEVADKSASFTDTSSLMDKSD 481
C V + L EM + S S D ++ D
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEM-IQRGISPDTVTYTSLIDGFCKENQLD 369
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
A ++ M + I N I +CK +I D L+++R+M + T+ L+
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLI 429
Query: 542 YGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
G L L+ + + R + +++ Y+ LL G E+ +E+ ++
Sbjct: 430 QGFCELGKLEVAKELFQEMVSRRVRPDIVS-----YKILLDGLCDNGEPEKALEIFEKIE 484
Query: 601 KQNMYVDKLMY 611
K M +D +Y
Sbjct: 485 KSKMELDIGIY 495
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 102/248 (41%), Gaps = 19/248 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
++N K G NS L+ L +E + S VID+L + G + A + ++ME
Sbjct: 243 GPVLNRLCKSG-NSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME 301
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
+ G D TY SL+ + + +L++M + +N+ ++V FS + D
Sbjct: 302 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM----IGRNIIPDVVT---FSALID-- 352
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
F L++ A+ L EM NS I FCK + +A +++ M
Sbjct: 353 -VFVKEGKLLE----AKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVS 407
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
P + T+ L+ + + D L+ R I S L + Y TL+L F Q G
Sbjct: 408 KGCEPDIVTYSILINSYCKAKRVDDGMRLF----REISSKGLIPNTITYNTLVLGFCQSG 463
Query: 588 YFERVMEV 595
E+
Sbjct: 464 KLNAAKEL 471
>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 582
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 15/194 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L++ + K GK E + ++L + + + + ++D + + A DI D M
Sbjct: 286 LVDAFCKEGKVKE-AKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASR 344
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + +Y +++ K+KM EA L ++MR ++ N VV+ S
Sbjct: 345 GVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPN-----VVTYN---------S 390
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D + K L+ EM + I NS + CK + A+ + +++
Sbjct: 391 LIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQG 450
Query: 530 IRPTVETFYYLVYG 543
IRP + T+ L+ G
Sbjct: 451 IRPDMYTYTVLIKG 464
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 72/334 (21%), Positives = 140/334 (41%), Gaps = 58/334 (17%)
Query: 171 ELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDE 230
E I P F++++ A + G + + ++ + + ++ D ++ + + C E
Sbjct: 274 ENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILD---VVTYNSLMDGYCLVKE 330
Query: 231 LKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQ 290
+ K K D +++ Q Y ++++ K +D A L +M R R+ +PN +
Sbjct: 331 INKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEM-RCRKIIPNV-VTY 388
Query: 291 DAQKPYLISIGSPNLRCGLKL-------QIMPELLEKDSILKMEGKQELVLFRNGKLLHS 343
++ L +G + C LKL P ++ +SIL K H
Sbjct: 389 NSLIDGLGKLGK--ISCVLKLVDEMHDRGQPPNIITYNSILDALCKNH----------HV 436
Query: 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
++A+A L N K G I+ + +++ + +I L Q G LE A +
Sbjct: 437 DKAIALLTN-LKDQG-----------IRPDMYTY------TVLIKGLCQSGKLEDAQKVF 478
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVSERFSE 462
+D+ + G+ +D TY ++ + +F A ALL +M C+ + E+V+ F +
Sbjct: 479 EDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEK 538
Query: 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAAL 496
D++D+AE L++EM L
Sbjct: 539 ---------------DENDMAEKLLREMIARGLL 557
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 16/212 (7%)
Query: 337 NGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL 396
+GKL+ N M +I K ++ L S + C+ +I +G L
Sbjct: 202 DGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQL 261
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK-QMRKSCLVQNLSCEMV 455
+ A +L M L T+ L+ A+ K +EA+ +L M+K ++ V
Sbjct: 262 KEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILD------V 315
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
V+ S D L+ + + A+ + M ++ + + I CK KM+
Sbjct: 316 VTYN---------SLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMV 366
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSL 547
+A+ ++ M+ KI P V T+ L+ G L
Sbjct: 367 DEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKL 398
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 97/235 (41%), Gaps = 32/235 (13%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
VID + G + A D+ +M G P D TY S++ A K + +AEA L+QM K
Sbjct: 238 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 297
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
L N + ++ ++ T + A + +EMR + L + L+
Sbjct: 298 VLPNNWTYNNLIY-----------GYSSTGQWKE----AVRVFKEMRRHSILPDVVTLSM 342
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW----GDI 560
+ CK I +A ++ M P V ++ ++ G+++ D+T L+ GD
Sbjct: 343 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD- 401
Query: 561 KRNIESGVLAVSRDLY--ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++ D Y L+ + G ++ M + M+ + D + Y++
Sbjct: 402 ---------GIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 447
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 145/358 (40%), Gaps = 55/358 (15%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS----IIILAQIHEMNCQR 228
I PD FN+++ A G K I M GV D + I L +I +M+
Sbjct: 403 IAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD--- 459
Query: 229 DELKKFKCYIDQLSTPFAHHY----QQF--YESLLSLHFKFDDIDAAGELILDMNRYREP 282
D ++KF IDQ P + Y Q F + SLL +I G + LD+ +
Sbjct: 460 DAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNG-MHLDIVFFSSI 518
Query: 283 LPN-PKLRQ--DAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILK---MEGKQELVLFR 336
+ N KL + DAQ + +++ + + P+ + ++ + GK E L
Sbjct: 519 INNLCKLGRVMDAQNIFDLTV---------NVGLHPDAVVYSMLMDGYCLVGKMEKALRV 569
Query: 337 NGKLLHSN-----RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVID 388
++ + L+NGY K G+ E LS+ +E G + L S +ID
Sbjct: 570 FDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEG----LSLFREMLQRGIKPSTILYSIIID 625
Query: 389 ALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQ 448
L Q G A +M +G MD TY +L +K + F EA L K++R +
Sbjct: 626 GLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKI 685
Query: 449 NLSC------EMVVSERFSEVADKSASFTD--------TSSLMDKSDLAESLIQEMRE 492
N+ M + R E D AS + T S+M + + E L++E +
Sbjct: 686 NIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAED 743
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 111/264 (42%), Gaps = 20/264 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+I+ Y K G++ E L K + + I A E A ++ M+ +
Sbjct: 158 IIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSS 217
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
D TY +LL Y K + EA +LK+M + + N+ + +E S A A
Sbjct: 218 NCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNI---VTYNELLS--AFGRAG 272
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
+ ++ M S +++ + + ++ S + + + + A++IY +M+
Sbjct: 273 LCNAAAEMKDSMVSKGIEPD---------VFTYTSLLSAYSRAGKVEQAMEIYNQMRTSN 323
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQGGY 588
P TF L+ H + + ++ +++ D++ +E ++ + +LL F + G
Sbjct: 324 CTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVT-----WNSLLGAFGKNGM 378
Query: 589 FERVMEVIGYMKKQNMYVDKLMYK 612
+ V++V MKK DK +
Sbjct: 379 YSEVLKVFRGMKKAGFEPDKATFN 402
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 23/200 (11%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDM 406
L++ Y K G +E + +L KE S G ++++ A + G AA ++ D M
Sbjct: 229 LLDVYGKAGWYNEAANVL----KEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSM 284
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
G D TY SLL+AY + +A + QMR S N S F+ +
Sbjct: 285 VSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPN-------SFTFNALIGM 337
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ S +M + ++M+ I NS + F K M + LK++R M+
Sbjct: 338 HGKNKNFSEMM-------VIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMK 390
Query: 527 EMKIRPTVETFYYLV--YGH 544
+ P TF L+ YG
Sbjct: 391 KAGFEPDKATFNILIEAYGR 410
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 64/319 (20%), Positives = 123/319 (38%), Gaps = 52/319 (16%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD-----------------AHSI 215
+PD FN+++ A R GSS + I + M Q G D H+
Sbjct: 394 FEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAE 453
Query: 216 IILAQIHEMNCQRD---------------ELKKFKCYIDQLSTPFAHHYQQFYESLLSLH 260
+IL +++ + + + EL+K K +D L T + + ++ + ++
Sbjct: 454 LILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVY 513
Query: 261 FKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPY----LISIGSPNLRCGLKLQIMPE 316
K +D A + L M R+ L + Y ++ + + P+
Sbjct: 514 SKCSLVDEAEDAFLAM-RHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPD 572
Query: 317 LLEKDSILKMEGKQELVLFRNGKLLHSNRA--------MAKLINGYKKHGKNSELSWL-- 366
++ + ++ M G++ + L A +I Y KHG+ S + +
Sbjct: 573 VVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFH 632
Query: 367 -LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY 425
++S + SF +T + + G A ++ M G D TY++L+ AY
Sbjct: 633 EMVSNGIQPDSFTYNTF----VGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAY 688
Query: 426 YKVKMFREAEALLKQMRKS 444
K+ F E E +LK ++ S
Sbjct: 689 CKIGKFEEVERILKFIKSS 707
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 29/231 (12%)
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G+P+D Y SL++A + + F+EA +QM+++ +L V+ + + + K S
Sbjct: 112 GYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGK---KGRS 168
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
+ + L +EM+ + Y N++I G + +A +++ +M+
Sbjct: 169 WENIL----------ELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSN 218
Query: 530 IRPTVETFYYL--VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
P T+ L VYG + Y + ++ + +ES + Y LL F + G
Sbjct: 219 CTPDRVTYNALLDVYGKAGW--YNEA----ANVLKEMESAGCLPNIVTYNELLSAFGRAG 272
Query: 588 YFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK--------HLYRRLKVSN 630
E+ M + + D Y S + + +Y +++ SN
Sbjct: 273 LCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSN 323
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 73/184 (39%), Gaps = 21/184 (11%)
Query: 374 HHSFGESTLCSDVIDALIQL----GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVK 429
HH + T +A+I + G ++ A D + G D TY L+ Y +
Sbjct: 531 HHGYLSDT---STFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREG 587
Query: 430 MFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQE 489
M+R+ EA L++ C+ + ++V ++ V + SS A + E
Sbjct: 588 MYRKCEATLRE----CMAAGQTPDLV---SYNTVIFSYSKHGQLSS-------ATRIFHE 633
Query: 490 MREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEM 549
M + N+ + + G M +AL + + M + +P T+ LV + +
Sbjct: 634 MVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKIGK 693
Query: 550 YRDI 553
+ ++
Sbjct: 694 FEEV 697
>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Glycine max]
Length = 746
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 19/233 (8%)
Query: 382 LCSDVIDALIQLGFLEAAHDILDDMELAG-HPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
L + +ID L ++G E +L++M++ + ++ TY L+ ++K F A L +Q
Sbjct: 359 LFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQ 418
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
M + + N V++ + D + A EM+ +
Sbjct: 419 MNEEGVQPN-----VITLN---------TLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAA 464
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
+ I FC I A++ + M P +Y L+ G D +++ +
Sbjct: 465 TYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKL 524
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
K ++ R Y L+ F + ERV E++ M++ + D + Y +
Sbjct: 525 KL----AGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNT 573
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 77/398 (19%), Positives = 136/398 (34%), Gaps = 103/398 (25%)
Query: 158 VFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIII 217
VF L + + ++PD ++FN ++ + G G ++E M
Sbjct: 338 VFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMG----------- 386
Query: 218 LAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMN 277
N R + C ID FK + D A EL MN
Sbjct: 387 -------NINRPNTVTYNCLIDGF-------------------FKAGNFDRAHELFRQMN 420
Query: 278 RYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRN 337
++ +P +I++ + D + K V F N
Sbjct: 421 ------------EEGVQPNVITLNT----------------LVDGLCKHGRVHRAVEFFN 452
Query: 338 ---GKLLHSNRAM-AKLINGYKKHGKNSELSWLLLSIKKEHHSFGE--STLCS------- 384
GK L N A LI+ + G N+ I + F E S+ CS
Sbjct: 453 EMKGKGLKGNAATYTALISAF--CGVNN--------INRAMQCFEEMLSSGCSPDAVVYY 502
Query: 385 DVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
+I L G + A ++ ++LAG +D + Y L++ + K K LL +M ++
Sbjct: 503 SLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEET 562
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
+ + + K+ F S +M+K M +E ++ +
Sbjct: 563 ----GVKPDTITYNTLISYLGKTGDFATASKVMEK----------MIKEGLRPSVVTYGA 608
Query: 505 SIYFFCKGKMIGDALKIYRRM-QEMKIRPTVETFYYLV 541
I+ +C K + + +KI+ M K+ P + L+
Sbjct: 609 IIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILI 646
>gi|255661090|gb|ACU25714.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 308
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 33/221 (14%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + NS W LS+ + + GE + D+++ + + G L
Sbjct: 103 SSPYMDMLANKFTSYSHNS---WKPLSLARGVRVTAKGEDSFDLDMVNTYLSIFLAKGKL 159
Query: 397 EAA---HDILDDMEL--AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
A +I DM + AG+ TY S+++A+ K F+EA ++L M ++ +++
Sbjct: 160 SVACKLFEIFTDMGVDPAGY-----TYNSIMSAFVKKGYFKEAWSVLHAMGETVYPADIA 214
Query: 452 CEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK 511
V+ + + M ++DLA ++++++ +E I N+ I K
Sbjct: 215 TYNVIIQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGK 260
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
I +A K++ +M+ I P V T+ L+ HS +D
Sbjct: 261 AGRIDEANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLKD 301
>gi|414591646|tpg|DAA42217.1| TPA: hypothetical protein ZEAMMB73_097907 [Zea mays]
Length = 476
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-R 442
+ VID + G + A D+ +M G P D TY S++ A K + +AEA L+QM
Sbjct: 223 TTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVN 282
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
K L N + ++ ++ T + A + +EMR L + L
Sbjct: 283 KGVLPNNWTYNNLIY-----------GYSSTGQWKE----AVRVFKEMRRHNILLDVVNL 327
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
N+ + CK I +A ++ M P V ++ ++ G+++ D+T L+
Sbjct: 328 NTLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLF 382
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 122/294 (41%), Gaps = 44/294 (14%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++NG K G + +L++ LL+ + + + + +ID+L + ++ A ++ +ME
Sbjct: 156 VVNGLCKRG-DIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK 214
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC------------EMVVS 457
G + TY SL++ + +A LL M + + NL + V +
Sbjct: 215 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA 274
Query: 458 ERFSEVADKSA---------SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
E+ + K + S + + D+ D A+ + + M + + N+ I
Sbjct: 275 EKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKG 334
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-------IK 561
FCK K + D +++R M + T+ L+ G ++ D GD K
Sbjct: 335 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG-----LFHD-----GDCDNAQKVFK 384
Query: 562 RNIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + G V D+ Y LL G E+ +EV YM+K + +D +Y +
Sbjct: 385 QMVSDG---VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 435
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 20/213 (9%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
++D M G+ D+ T+ +L+ + EA AL+ +M + NL VV
Sbjct: 102 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLC 161
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
+ D DLA +L+ +M + + N+ I CK + + DAL +
Sbjct: 162 KRGD--------------IDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNL 207
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLL 580
++ M+ IRP V T+ L+ S + D + L D I++ I ++ + L+
Sbjct: 208 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT-----FNALI 262
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
F++ G F ++ M K+++ D Y S
Sbjct: 263 DAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNS 295
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477
+ LL+A K+K F +L ++M++ + NL ++ F + S
Sbjct: 13 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQIS---------- 62
Query: 478 DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
LA +L+ +M + +I L+S + +C GK I DA+ + +M EM RP TF
Sbjct: 63 ----LALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITF 118
Query: 538 YYLVYG 543
L++G
Sbjct: 119 TTLIHG 124
>gi|255661204|gb|ACU25771.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 426
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/297 (19%), Positives = 126/297 (42%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G + LSWL ++ G+ L S++I+ +L A I +
Sbjct: 13 STLITHFGKEGLFDDALSWL--QXMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCEMVVSERF 460
+ +G D Y S++ + K K+F+EA +L+ +M+ + + + L V +++F
Sbjct: 71 KRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTLLTMYVENQKF 130
Query: 461 SEVADKSAS---------------FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
E A D +D + A+ L MR+ + N+
Sbjct: 131 LEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIEPNVISYNTL 190
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRN 563
+ + ++ G+A+ ++R MQ I V T+ ++YG +LE + ++
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYG-KTLEHEKANNLIQEMHNXG 249
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 250 IEPNAIT-----YSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMIVAYER 301
>gi|125541207|gb|EAY87602.1| hypothetical protein OsI_09013 [Oryza sativa Indica Group]
Length = 555
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 101/273 (36%), Gaps = 34/273 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS---LLTAYYKVKMFREAEALLKQMR 442
ID+ G + A D+ + M G + S T K+ ++ A K E L+ +MR
Sbjct: 296 AIDSFCSAGLVSEARDLFEFMRTEGSTISSPTAKTYSIMIAALAKAGQMEECFELISEMR 355
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
K + ++S + L+DK D A ++ EM + I
Sbjct: 356 KCGCMPDVS--------------TYKDLIEGMLLVDKLDAAYCVLDEMAKAGFPPDIVTY 401
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL-VYGHSSLEMYRDITILWGDIK 561
N + C + DAL++ RM E P+V T+ L V E R I I K
Sbjct: 402 NCFLKVLCGLQKADDALELCERMIEAHCEPSVHTYNMLMVMFFEMREPDRAINIWIEMDK 461
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKH 621
R V D YET++ G E ++ + + M KL YK K
Sbjct: 462 RGCHRAV-----DTYETMIDGLFDSGRTEDATTLLDEVINRGM---KLSYK----KFDAI 509
Query: 622 LYRRLKVSNA----RTEAQSKRLVNVQAFRKWA 650
+ R V N R +R NV R++A
Sbjct: 510 MLRLSAVGNLGAIHRLSEHMRRFYNVAMSRRFA 542
>gi|147778635|emb|CAN76113.1| hypothetical protein VITISV_005528 [Vitis vinifera]
Length = 466
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 28/231 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++D + G L ++ +M G DS Y ++ Y M+++A +++++R
Sbjct: 153 LVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIR--- 209
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL--IQEMREEAALSTIYKLN 503
EM VS DK + + +L+E+L ++M+EE I N
Sbjct: 210 -------EMGVS------LDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWN 256
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
S I + CK +G AL+++ +MQE + P + F ++ S L W IKRN
Sbjct: 257 SLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITII---SRLGEQGK----WDVIKRN 309
Query: 564 IESGVL---AVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
E+ S +Y L+ + Q G F+ E I +K + + M+
Sbjct: 310 FENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQPSASMF 360
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 98/461 (21%), Positives = 179/461 (38%), Gaps = 63/461 (13%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
PD + +N ++ R G ++ LM + G+V D + + C+ + +++
Sbjct: 325 PDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFI---DFLCKSNRVEEA 381
Query: 235 KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQK 294
+ D L+ Y L+ + K +D AG L M + PN +A
Sbjct: 382 RRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKM-LSKNCSPN-AYTFNALI 439
Query: 295 PYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLF--------RNGKLLHSNRA 346
L S G NL+ L L D ++KM K + F + G +++
Sbjct: 440 HGLCSAG--NLKEALSLF--------DQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKC 489
Query: 347 MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ K+++ +K + + +++F I+ G ++ A D++ M
Sbjct: 490 LQKMMSSGEK------------PVARTYNAF---------IEVYCSAGKVQEAEDMMVQM 528
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS----------CLVQNLSCEMVV 456
+ G P D TY SL+ AY K+ + A +LK M + L++ L + V
Sbjct: 529 KEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYV 588
Query: 457 SERFSEVADKSAS-FTDTSSL----MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK 511
E+ E +S S F D M + D+ L +EM + I CK
Sbjct: 589 VEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICK 648
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV 571
+ +G ALK+ +MQ+ I P+ F ++ L+ Y + + D+ + S L
Sbjct: 649 VENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEH 708
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
+ TL+ + G ER V ++ D++ +K
Sbjct: 709 CK----TLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWK 745
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 43/233 (18%), Positives = 100/233 (42%), Gaps = 33/233 (14%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
++++ L + G ++ + + +M MD T+ ++ Y K+ +EA+ + +M +
Sbjct: 161 NELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQ 220
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD-----KSDLAESLIQEMREEAALST 498
+ L + FT TS ++ D A + +EM +S
Sbjct: 221 AGLSPDY-------------------FTSTSFILGYCRSKDVDSAFRVFEEMPNRNEVS- 260
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG 558
N I+ C+ I +A+ ++ RM++ P V T+ L+ G +++ + +L
Sbjct: 261 ---YNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNVHKAMGLLDE 317
Query: 559 DIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
++RN+ ++ Y +L+ + G+ + ++ MK++ + D+ Y
Sbjct: 318 MLERNLVPDLIT-----YNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTY 365
>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
Length = 814
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 20/229 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
VID + G + A D+ +M G P D TY S++ A K + +AEA L+QM K
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKG 284
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
L N + ++ ++ T + A + +EMR ++ L + N
Sbjct: 285 VLPNNWTYNNLIY-----------GYSSTGQWKE----AVRVFKEMRRQSILPDVVTFNM 329
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
+ CK I +A ++ M P V ++ ++ G+++ D+T L+ + +
Sbjct: 330 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDG 389
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ V+ + L+ + G ++ M + M+ + + L Y +
Sbjct: 390 IAPVICT----FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTT 434
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 146/351 (41%), Gaps = 41/351 (11%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS-IIILAQIHEMNCQRDEL 231
I P FN+++ A G K I M GV + + ++A + + D +
Sbjct: 390 IAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAM 449
Query: 232 KKFKCYIDQLSTP--FAHH--YQQF--YESLLSLHFKFDDIDAAGELILDMNRYREPLPN 285
+KF IDQ P +A+H Q F + SLL +I G + LD+ + + N
Sbjct: 450 EKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG-MHLDIVLFSSIINN 508
Query: 286 -PKLRQ--DAQKPYLISIGSPNLRCGL-KLQIMPELLEKDSILKMEGKQELVLFR---NG 338
KL + DAQ + +++ GL ++ +L L + ++ L +F +
Sbjct: 509 LCKLGRVMDAQNIFDLTV-----NVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSA 563
Query: 339 KLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGF 395
+ ++ L+NGY K G+ E LS+ +E G + L + +ID L + G
Sbjct: 564 GIEPNDVVYGTLVNGYCKIGRIDEG----LSLFREMLQKGIKPSTILYNIIIDGLFEAGR 619
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL------VQN 449
A +M +G M+ TY +L +K + F EA L K++R + +
Sbjct: 620 TVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNT 679
Query: 450 LSCEMVVSERFSEVADKSASFTD--------TSSLMDKSDLAESLIQEMRE 492
+ M + R E D AS + T S+M + + E L++E +
Sbjct: 680 MIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAED 730
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 49/255 (19%), Positives = 101/255 (39%), Gaps = 33/255 (12%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S V+ AL + ++ A L M G ++ TY +L+ Y ++EA + K+MR+
Sbjct: 258 SSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR 317
Query: 444 SCLVQNLS---------CEMVVSERFSEVADKSA----------------SFTDTSSLMD 478
++ ++ C+ + +V D A + L+D
Sbjct: 318 QSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVD 377
Query: 479 KSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFY 538
+DL + ++ + I N I + M+ A+ I+ M++ ++P V T+
Sbjct: 378 MTDLFDLMLG----DGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYT 433
Query: 539 YLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGY 598
++ + D + + I+ GV A + Y L+ F G + E+I
Sbjct: 434 TVIAALCRIGKMDDAMEKFNQM---IDQGV-APDKYAYHCLIQGFCTHGSLLKAKELISE 489
Query: 599 MKKQNMYVDKLMYKS 613
+ M++D +++ S
Sbjct: 490 IMNNGMHLDIVLFSS 504
>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
Length = 543
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/230 (19%), Positives = 95/230 (41%), Gaps = 18/230 (7%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S V+D + G ++ A +LD+M G +++ Y SLL Y + K + LL+ M
Sbjct: 136 SVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMEN 195
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ + ++ + S D S E+++ EM+ + +Y
Sbjct: 196 GGIEATVGTYTILVDSLSTAGDISK--------------VEAVVDEMKAKNVAGDVYLYT 241
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ I +C+ + A +++ I P T+ L+ G + +L D++
Sbjct: 242 AVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGR 301
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
GV ++ ++ T++ + + G + ++V M+K + +D Y +
Sbjct: 302 ---GV-GHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNT 347
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 22/222 (9%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
+ R LING+ K G+ E + +LL+ + + + +ID + G ++ A +
Sbjct: 271 NERTYGVLINGFCKIGQ-MEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKV 329
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN---------LSC- 452
ME G +D TY +L +V EA+ LL M + + N + C
Sbjct: 330 KAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCK 389
Query: 453 --EMVVSER-FSEVADKSA--SFTDTSSLMD----KSDL--AESLIQEMREEAALSTIYK 501
+MV + R F E+A K A S + +MD K + AE +EM ++ + +Y
Sbjct: 390 EGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYT 449
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
S ++ C + ALK++ M+ P V + L+ G
Sbjct: 450 YASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISG 491
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 14/158 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++D+L G + ++D+M+ D Y +++ AY + R A + + +
Sbjct: 208 LVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNG 267
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ N V+ F ++ A AE L+ +M+ N+
Sbjct: 268 IEPNERTYGVLINGFCKIGQMEA--------------AEMLLADMQGRGVGHNQIIFNTM 313
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
I +C+ M+ +ALK+ M++M I V T+ L G
Sbjct: 314 IDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACG 351
>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
Length = 687
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 118/299 (39%), Gaps = 42/299 (14%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID I+ G LEA + D M G ++ TY LL+ + E ALL +M
Sbjct: 237 MIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQK 296
Query: 446 LVQNLSCEMVVSERFSEVADKSA-------SFTDTSSLMD--------------KSDLAE 484
+V + ++ + S D A S + ++ D K +AE
Sbjct: 297 MVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAE 356
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
++Q + + T N+ I +C+ + A + +M+ I+P T+ L+ G
Sbjct: 357 EVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGL 416
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
E + L +++ N GV + + + TL+ + + G E+ V+ M++ +
Sbjct: 417 CKAERITNAQDLLMEMQDN---GV-NPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 472
Query: 605 YVDKLMYKS---EFLKH--------------HKHLYRRLKVSNARTEAQSKRLVNVQAF 646
+ + Y S F K+ HK + +V NA +A + N QAF
Sbjct: 473 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAF 531
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 69/370 (18%), Positives = 145/370 (39%), Gaps = 45/370 (12%)
Query: 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGV-VADAHSI-IILAQIHEMNCQRDEL 231
+PDT +N + ACV G + ++ M + G +A S +++A + D +
Sbjct: 157 RPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAV 216
Query: 232 KKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQD 291
+ F ++ P +H Y +++ H K D++A L R+ + L+ +
Sbjct: 217 EVFDEMTERAVLP--NHIT--YNTMIDGHIKGGDLEAGFSL-------RDQMVCHGLKPN 265
Query: 292 AQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLI 351
A ++ G R G + E ++L Q K++ + L
Sbjct: 266 AITYNVLLSGL--CRAG-------RMGETSALLDEMASQ--------KMVPDGFTYSILF 308
Query: 352 NGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGH 411
+G ++G + + L K + G+ T CS +++ L + G + A ++L + AG
Sbjct: 309 DGLSRNGDSKAMLSLFGKSLKNGVTIGDYT-CSILLNGLCKDGKVSIAEEVLQSLVNAGL 367
Query: 412 PMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFT 471
Y +L+ Y + A + QM+ +++ + + K+ T
Sbjct: 368 VPTRVIYNTLINGYCQTGELEGAFSTFGQMKS----RHIKPDHITYNALINGLCKAERIT 423
Query: 472 DTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR 531
+ A+ L+ EM++ T+ N+ I + + + + MQE ++
Sbjct: 424 N----------AQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLK 473
Query: 532 PTVETFYYLV 541
P V ++ +V
Sbjct: 474 PNVVSYGSIV 483
>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
Length = 629
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 124/288 (43%), Gaps = 28/288 (9%)
Query: 350 LINGYKKHGKNSE-LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
+++G K G+ E L+++ + H + + +IDA ++G + A+++++ ME
Sbjct: 215 VVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMEN 274
Query: 409 AGHPMDSTTYKSLLTAYYK-------VKMFREAEALLKQMRKSCLV-----------QNL 450
G P + T +++ + ++ FRE + + + + + N+
Sbjct: 275 EGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNV 334
Query: 451 SCEM-VVSERFSE--VADKSASFTDTSSLMDKSDL--AESLIQEMREEAALSTIYKLNSS 505
M + E+ SE D FT S L L A S+ M+E N
Sbjct: 335 GMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNIL 394
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I FC+ K + +A ++ + M+E+ IRP V T+ L+ G + + L G + I+
Sbjct: 395 IAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKM---ID 451
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G S + TL+ + + G + + ++ M + ++ + ++Y +
Sbjct: 452 DGCQP-SVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNT 498
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 84/400 (21%), Positives = 155/400 (38%), Gaps = 51/400 (12%)
Query: 169 GAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQR 228
G ++PD + + ++++ + G +++ MS+ + ++ L + + C+
Sbjct: 164 GCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRP-DVVTLNTVVDGLCKS 222
Query: 229 DELKKFKCYIDQL--STPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNP 286
+++ +++Q S Y L+ + +I A EL+ M E +P
Sbjct: 223 GRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMEN--EGVPQN 280
Query: 287 KLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRN--GKLLHSN 344
+ + L G R G L+ EK ++ EGK V + G LLH+N
Sbjct: 281 IVTLNTIVGGLCRAG----RTGAALEF---FREKRTVWP-EGKGNAVTYSTLVGALLHTN 332
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
N ++ L K ++ + +I L Q G LE A +
Sbjct: 333 ---------------NVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMAS 377
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS------CLVQNL---SCEM- 454
M+ AG +D+ Y L+ + + K EA LL++M++ C L SC+
Sbjct: 378 SMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAG 437
Query: 455 ---VVSERFSEVADKS--ASFTDTSSLM------DKSDLAESLIQEMREEAALSTIYKLN 503
V E ++ D S +L+ K D A +++ M E N
Sbjct: 438 DFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYN 497
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ I F CK + A++++ M+E + V TF L+ G
Sbjct: 498 TLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKG 537
>gi|255661072|gb|ACU25705.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 309
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 89/203 (43%), Gaps = 20/203 (9%)
Query: 356 KHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFLEAAHDILDDMELA 409
K S+ SW S+ + + GE + D+++ + + G L A + +
Sbjct: 114 KFTSXSQYSWKPFSLARGVRVTAKGEDSFDLDMVNTYLSIFLAKGKLSVACKLFEIFTNM 173
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G S TY S+++++ K F+EA ++L M ++ +++ V+ + E
Sbjct: 174 GVDPASYTYNSIMSSFVKKGYFKEAWSVLHAMGETVYPADIATYNVIIQGLGE------- 226
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
M ++DLA ++++ + +E I N+ I K I +A K++ +M+
Sbjct: 227 -------MGRADLANAVLEXLMKEGGYLDIVMYNTLINALGKAGRIDEANKLFEQMKASG 279
Query: 530 IRPTVETFYYLVYGHSSLEMYRD 552
I P V T+ L+ HS +D
Sbjct: 280 INPDVVTYNTLIEVHSKAGRLKD 302
>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
Length = 606
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 103/275 (37%), Gaps = 53/275 (19%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
+ D +LVL AC R G G I + +TG+ +D + NC
Sbjct: 110 VSVDKFSLSLVLKACSRLGFVKGGMQIHGFLRKTGLWSD---------LFLQNCLIGLYL 160
Query: 233 KFKC--YIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLP--NPKL 288
K C + Q+ Y S+++ + K I++A EL M R + L N +
Sbjct: 161 KCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIESARELFDLMPREMKNLISWNSMI 220
Query: 289 RQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMA 348
AQ ++I S ++ E+ EKD I +
Sbjct: 221 SGYAQTSEGVNIAS---------KLFAEMPEKDLI----------------------SWN 249
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
+I+GY KHG+ + L + + + C+ +ID +LGF+ A + D M L
Sbjct: 250 SMIDGYVKHGRIEDAKGLFDVMPRR-----DVVTCATMIDGYAKLGFVHQAKTLFDQMPL 304
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
D Y S++ Y + K EA + M K
Sbjct: 305 R----DVVAYNSMMAGYVQNKCHMEALEIFNDMEK 335
>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 326 MEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD 385
ME K+ LV + L L++GY GK ++ L+ ++K F + C
Sbjct: 253 MEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRK--RGFEPNVNCYT 310
Query: 386 V-IDALIQL-GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
V I AL + ++ A + +ME G D TY +L++ + K M + ++L MRK
Sbjct: 311 VLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRK 370
Query: 444 SCLVQNLSCEMVV------SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
++ + M + E+F E + LI++M+
Sbjct: 371 KGVMPSQVTYMQIMVAHEKKEQFEECLE--------------------LIEKMKRRGCHP 410
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546
+ N I CK + +A++++ M+ + P V+TF ++ G +S
Sbjct: 411 DLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTS 459
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 13/169 (7%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G L A ++L M+ AG D + +LL+ Y +A L+ MRK N++C
Sbjct: 250 GKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCY 309
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
V+ + + T MD+ A + EM + I + I FCK
Sbjct: 310 TVLIQ----------ALCRTEKRMDE---AMRVFVEMERYGCEADIVTYTALISGFCKWG 356
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
MI + M++ + P+ T+ ++ H E + + L +KR
Sbjct: 357 MIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKR 405
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 102/227 (44%), Gaps = 20/227 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++DAL + G ++ A + +DM P + + SLL + + EA+ +L QM+++
Sbjct: 208 LLDALCKNGSVKEASKVFEDMR-EKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEA- 265
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L ++VV F+ + + + + D DL + +MR+ +
Sbjct: 266 ---GLEPDIVV---FTNLL---SGYAHAGKMADAYDL----MNDMRKRGFEPNVNCYTVL 312
Query: 506 IYFFCKG-KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
I C+ K + +A++++ M+ + T+ L+ G M + D+++
Sbjct: 313 IQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRK-- 370
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
GV+ S+ Y +++ + FE +E+I MK++ + D L+Y
Sbjct: 371 -KGVMP-SQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIY 415
>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 647
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 104/265 (39%), Gaps = 25/265 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI G G S +L S++ +H F S +ID + G L A I +DM +
Sbjct: 339 LIRGLCSVGDLKGASSILNSME-QHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRS 397
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + Y +++ + K MF +A++L+ +M L++N V
Sbjct: 398 GCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKM----LLENCPPNTVTFN----------- 442
Query: 470 FTDTSSLMDKSDLAESL--IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
T SL D + +L EMR + N I+ + GDAL + MQ
Sbjct: 443 -TLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQS 501
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQG 586
I ++ T+ +V G M R+ + G I + I+ + ++ + +
Sbjct: 502 HGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFT-----FSAIIHAYCKE 556
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMY 611
G ++G M N + + L+Y
Sbjct: 557 GEVRMAAWMLGAMNVVNCHRNILVY 581
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 67/178 (37%), Gaps = 36/178 (20%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK-- 443
++ AL Q + AA +LD+M G P D TY ++++ K+ EA +L M
Sbjct: 169 LVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMPPVA 228
Query: 444 ---SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
+ +V L E + E FS V+D M +
Sbjct: 229 ASYNAIVLALCREFRMQEVFSVVSD------------------------MVGRGLQPNVI 264
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYR 551
+ + FCK + A I RM P V TF LV G H +L+M+R
Sbjct: 265 TYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWR 322
>gi|358347154|ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503561|gb|AES84764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 989
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 116/271 (42%), Gaps = 29/271 (10%)
Query: 348 AKLINGYKKHGKNSELSWLL-----LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
+ ++ G+ +HGK +E + L + + H S+ + +I++L + G + A ++
Sbjct: 360 SSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSY------ATIINSLFKSGRVMEAFNL 413
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462
M + G D T +++ +KV +EAE + + + K L N
Sbjct: 414 QSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCV----------- 462
Query: 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
++ D + K +LAE ++Q+M +E + +S I + K M+ A+ +
Sbjct: 463 ---TYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVL 519
Query: 523 RRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLN 582
R M + + P + L+ G+ +D+ D + ++S L S +++ LL N
Sbjct: 520 REMVQRNVMPNTIVYAILIDGYFKAGE-QDVA---DDFCKEMKSRRLEESNVIFDILLNN 575
Query: 583 FLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ G + +I M + + D + Y S
Sbjct: 576 LKRVGRMDEARSLIIDMYSKGIDPDIVNYAS 606
>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
Length = 713
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 105/259 (40%), Gaps = 32/259 (12%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
E+ CS +I G EAA + + Y S++ AY + EALL
Sbjct: 201 EAVFCS-IISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALL 259
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVAD-----------KSASFTDTSS--------LMDK 479
QM + NL V F+E+ D K+ + T++
Sbjct: 260 AQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKA 319
Query: 480 SDLAESL--IQEMREEAALST--IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVE 535
++A++L ++EM + IY + Y +G A K++ M ++P +
Sbjct: 320 GNMAKALDILEEMDKHGVSPNKMIYAMIMDGY--ARGGDFTAAFKVWEDMVSAGLKPDIV 377
Query: 536 TFYYLVYGH-SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVME 594
T+ LV+ + M + + +L NI++ L + + Y ++L +++GG+ ++ +E
Sbjct: 378 TYNILVHAFCKAGRMDKALGVL-----ENIQANRLLPTIETYTSILDGYVKGGHIQKALE 432
Query: 595 VIGYMKKQNMYVDKLMYKS 613
V +K + + Y S
Sbjct: 433 VFDRIKTAGLRPGVVSYNS 451
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/233 (16%), Positives = 97/233 (41%), Gaps = 24/233 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ ++D ++ G ++ A ++ D ++ AG +Y SLL+ K + A +L +M
Sbjct: 415 TSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLA 474
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ +V N ++E ++ D +F + Q M++E I
Sbjct: 475 NGVVPNERSYTALTEGYARAGDVEKAF--------------GMFQRMKKENLAIDIVAYG 520
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEMYRDITILWGDI 560
+ + CK + A+++++++ + ++ T+ ++ G L RD+
Sbjct: 521 ALLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLL------ 574
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++++ + Y + + + G E V E + M+++ + V+ Y +
Sbjct: 575 -KDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTT 626
>gi|224144893|ref|XP_002325452.1| predicted protein [Populus trichocarpa]
gi|222862327|gb|EEE99833.1| predicted protein [Populus trichocarpa]
Length = 864
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 130/325 (40%), Gaps = 54/325 (16%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ +INGY K G +++ ++ + + + + + +ID ++ G +AA D+ ++M+
Sbjct: 335 SSIINGYTKKGM-LDVAVRIMKKMLDQNIMPNAYIYATLIDGHLKAGKQDAAVDLYNEMK 393
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
L G +S + + + + EAE L K M L+ + + + F + +S
Sbjct: 394 LNGLEENSFIVDAFINNLKRGRKMEEAEGLCKYMMSKGLLLDRVNYTSLMDGFFKTGRES 453
Query: 468 ASFTDTSSLMD---KSDL-----------------AESLIQEMREEAALSTIYKLNSSIY 507
A+FT + + K D+ AES+ +RE N+ I
Sbjct: 454 AAFTMAEKMAETGIKFDVVAYNVLINGLLRLGKYDAESVYSGIRELGLAPDRATYNTMIN 513
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS-SLEMYRDITI-----LWGDI- 560
+CK + +A+K++ M+ + P T LV G S + E R I + LWG
Sbjct: 514 AYCKQGKLENAIKLWNEMKGHSVMPNSITCNILVGGLSKAGETERAIDVLNEMLLWGICP 573
Query: 561 -------------------------KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEV 595
KR + G L +R++Y +L+ G +R V
Sbjct: 574 NVTIHRALLNACSKCERADTILQMHKRLVGMG-LKANREVYNSLITVLCGLGMTKRATLV 632
Query: 596 IGYMKKQNMYVDKLMYKSEFLKHHK 620
+ M K+ + D + Y + H K
Sbjct: 633 LNNMTKEGISADTVTYNALIHGHFK 657
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 108/276 (39%), Gaps = 27/276 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K GK+ E + ++ K + + + +ID +LG ++ A +L DME
Sbjct: 267 LIDGLFKAGKSDEAEAMFCTLAK-LNCIPNNITYTAMIDGYCKLGDMDGAESLLRDMEKK 325
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
+ TY S++ Y K M A ++K+M ++ N + + + + A+
Sbjct: 326 QVVPNVVTYSSIINGYTKKGMLDVAVRIMKKMLDQNIMPNAYIYATLIDGHLKAGKQDAA 385
Query: 470 -----------FTDTSSLMD----------KSDLAESLIQEMREEAALSTIYKLNSSIYF 508
+ S ++D K + AE L + M + L S +
Sbjct: 386 VDLYNEMKLNGLEENSFIVDAFINNLKRGRKMEEAEGLCKYMMSKGLLLDRVNYTSLMDG 445
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
F K A + +M E I+ V + L+ G L Y ++ G I
Sbjct: 446 FFKTGRESAAFTMAEKMAETGIKFDVVAYNVLINGLLRLGKYDAESVYSG-----IRELG 500
Query: 569 LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
LA R Y T++ + + G E +++ MK ++
Sbjct: 501 LAPDRATYNTMINAYCKQGKLENAIKLWNEMKGHSV 536
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 104/239 (43%), Gaps = 27/239 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I A + L A + ++M G D TY S++ K M EA+ALL++M K
Sbjct: 160 TTLISAYCKQHGLSEALSLYEEMISDGFLPDVVTYSSIINGLCKRGMLTEAKALLREMDK 219
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTS---------------SLMD------KSDL 482
+ N ++ + + SF S +L+D KSD
Sbjct: 220 MGVNPNHVVYAILVDSLFKAGSAWESFIYQSQMIVCGVSFDLVVCTTLIDGLFKAGKSDE 279
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCK-GKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
AE++ + + + + I +CK G M G A + R M++ ++ P V T+ ++
Sbjct: 280 AEAMFCTLAKLNCIPNNITYTAMIDGYCKLGDMDG-AESLLRDMEKKQVVPNVVTYSSII 338
Query: 542 YGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
G++ M D+ + +K+ ++ ++ + +Y TL+ L+ G + +++ MK
Sbjct: 339 NGYTKKGML-DVAVRI--MKKMLDQNIMPNAY-IYATLIDGHLKAGKQDAAVDLYNEMK 393
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 15/188 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+IN Y K GK E + L + K H S C+ ++ L + G E A D+L++M L
Sbjct: 511 MINAYCKQGK-LENAIKLWNEMKGHSVMPNSITCNILVGGLSKAGETERAIDVLNEMLLW 569
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + T +++LL A K + A+ +L QM K + L V S
Sbjct: 570 GICPNVTIHRALLNACSKCE---RADTIL-QMHKRLVGMGLKANREVYN----------S 615
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
+ + A ++ M +E + N+ I+ K I AL Y +M
Sbjct: 616 LITVLCGLGMTKRATLVLNNMTKEGISADTVTYNALIHGHFKSSHIEKALATYTQMLNEG 675
Query: 530 IRPTVETF 537
+ P + T+
Sbjct: 676 VSPGIRTY 683
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 14/160 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID+L G LE A +L +ME +G + TY +L+ + K K EAE + +M
Sbjct: 462 LIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEME--- 518
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+Q +S +V + K+ + + LMD +M E + NS
Sbjct: 519 -LQGISRNVVTYNTLIDGLCKNRRVEEAAQLMD----------QMLMEGLKPDKFTYNSL 567
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
+ +FC+ I A I + M P T+ L+ G S
Sbjct: 568 LTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLS 607
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 116/294 (39%), Gaps = 30/294 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
SN + L++GY K G+ E+ + + E T S +++ L ++G ++ A +I
Sbjct: 280 SNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNS-LVNGLCRIGHVKHALEI 338
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM----------RKSCLVQNLSC 452
LD M G D TY SL+ K+ EA +L QM + L+ L
Sbjct: 339 LDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCK 398
Query: 453 EMVVSE--RFSEVADKSASFTDTSS---------LMDKSDLAESLIQEMREEAALSTIYK 501
E V E + V D + L + LA L +EM+ + +
Sbjct: 399 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFT 458
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
N I C + +AL + + M+ V T+ L+ G + + ++ +++
Sbjct: 459 YNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEME 518
Query: 562 RNIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ +SR++ Y TL+ + E +++ M + + DK Y S
Sbjct: 519 ------LQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNS 566
>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
Length = 941
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 35/183 (19%)
Query: 389 ALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY-----------YKVKMFREA--- 434
L++ +E A +ILD+M LAG D TY +++ Y Y KM E
Sbjct: 618 GLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQL 677
Query: 435 -----EALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD----KSDLAES 485
EALLK KS +Q+ + V+ + +F + L+D + D+ E+
Sbjct: 678 DVFTYEALLKACCKSGRMQSA---LAVTREMNAQKIPRNTFV-YNILIDGWARRGDIWEA 733
Query: 486 --LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK---IRPTVETFYYL 540
L+Q+M +E I+ S I CK GD L+ + M+EM+ ++P V+T+ L
Sbjct: 734 ADLMQQMNQEGVQPDIHTYTSFINACCKA---GDMLRATKTMEEMEAAGVKPNVKTYTTL 790
Query: 541 VYG 543
++G
Sbjct: 791 IHG 793
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 59/289 (20%), Positives = 126/289 (43%), Gaps = 34/289 (11%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++ G+ K G N+E + KE H+ + + ++I A Q ++ A ++ +ME
Sbjct: 370 VVGGFAKFG-NAEAADCWFKKAKERHTNLNAYIYGNIIYAYCQACNMDRAEALVREMEEE 428
Query: 410 G--HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK----------SCLVQ------NLS 451
G P+D Y +++ Y ++ + + K++++ CL+ +S
Sbjct: 429 GIDAPLD--IYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVS 486
Query: 452 CEMVVSERFSEVADK------SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ VS+ V K S L D ++ A ++ +++ ++ + N+
Sbjct: 487 KALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTN-AFAVFEDVIKDGLKPDVVLYNNI 545
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS-SLEMYRDITILWGDIKRNI 564
I FC + A+ + + MQ+ + RPT TF +++G + + EM R + I D+ R
Sbjct: 546 IKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIF--DMMR-- 601
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
SG + + L+L ++ E+ +E++ M + D+ Y +
Sbjct: 602 RSGCIPTVH-TFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTT 649
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 95/231 (41%), Gaps = 24/231 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+ ++G + A ++ M+ G + TY L+ + K+K + A A+ + + K
Sbjct: 475 LINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDG 534
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L ++ + + F M D A +++EM++E T
Sbjct: 535 LKPDVVLYNNIIKAFCG--------------MGNMDRAIHMVKEMQKERCRPTSRTFMPI 580
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-HSSLEMYRDITILWGDIKRNI 564
I+ F + + AL+I+ M+ PTV TF LV G +M + + IL
Sbjct: 581 IHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEIL-------D 633
Query: 565 ESGVLAVSRD--LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E + VS D Y T++ + G + E M+ + + +D Y++
Sbjct: 634 EMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEA 684
>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 729
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 62/155 (40%), Gaps = 14/155 (9%)
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL 446
++ L +LG LE A ++L M GH D TY S + A+ + RE + M
Sbjct: 524 VNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDM----- 578
Query: 447 VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506
+S + +L + D A + EM+E+ + + N I
Sbjct: 579 ---------LSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLI 629
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
FCK + + A K + MQE I P T+ L+
Sbjct: 630 NGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILI 664
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 99/235 (42%), Gaps = 26/235 (11%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ ++ L L A ++ M G TTY ++L ++ K + A L+ +M+
Sbjct: 205 CNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQ 264
Query: 443 -KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL--AESLIQEMREEAALSTI 499
+ C ++ ++++ L K +L A+ LIQEM + +
Sbjct: 265 ERGCYPSEVTFNVLIN-----------------GLSKKGELQQAKGLIQEMAKAGLRVSP 307
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD 559
Y N I +CK ++ +AL ++ M + PTV + ++YG D D
Sbjct: 308 YTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSD 367
Query: 560 -IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+K+N+ +++ Y TL+ F + G ++ ++ +N+ + + Y +
Sbjct: 368 MLKKNLMPDIIS-----YNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNT 417
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+ L + G L+ A ++ +M AG + TY L+ Y K + EA AL ++M
Sbjct: 278 LINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRG 337
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ ++ + F K +D A + +M ++ + I N+
Sbjct: 338 VSPTVASHNTIMYGFC----KEGKMSD----------ARQQLSDMLKKNLMPDIISYNTL 383
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
IY FC+ IG+A + ++ + + T+ L+ G
Sbjct: 384 IYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDG 421
>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 492
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 21/200 (10%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREA-EALLKQMRKSCLVQNLSCEMVVSERF 460
+L +M G TY ++L Y++ +EA E L+ ++ C + +S V+ F
Sbjct: 227 VLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVI-HGF 285
Query: 461 SEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALK 520
E + A+ + EM +E + N+ I FCK + +A+
Sbjct: 286 GEAGEVKK--------------AKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVA 331
Query: 521 IYRRM-QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETL 579
++ M +E P V TF ++ G L D+ G ++R E G+ A S Y +
Sbjct: 332 VFEEMVREGVCSPNVVTFNVVIRG---LCHVGDMERALGFMERMGEHGLRA-SVQTYNVV 387
Query: 580 LLNFLQGGYFERVMEVIGYM 599
+ F G E+ +EV G M
Sbjct: 388 IRYFCDAGEIEKGLEVFGKM 407
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 76/187 (40%), Gaps = 15/187 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-R 442
+ VI + G ++ A + D+M G + TY +L+ + K + A A+ ++M R
Sbjct: 279 TTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVR 338
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
+ N+ VV V D M++ A ++ M E +++
Sbjct: 339 EGVCSPNVVTFNVVIRGLCHVGD-----------MER---ALGFMERMGEHGLRASVQTY 384
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
N I +FC I L+++ +M + P ++T+ L+ + D+ + +
Sbjct: 385 NVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLME 444
Query: 563 NIESGVL 569
+E G L
Sbjct: 445 MVERGFL 451
>gi|255661088|gb|ACU25713.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 429
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + NS W LS+ + + GE + D+++ + + G L
Sbjct: 224 SSPYMDMLANKFTSYSHNS---WKPLSLARGVRVTAKGEDSFDLDMVNTYLSIFLAKGKL 280
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F+EA ++L M ++ +++ V+
Sbjct: 281 SVACKLFEIFTNMGVDPASYTYNSIMSSFVKKGYFKEAWSVLHAMGETVYPADIATYNVI 340
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 341 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 386
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS +D
Sbjct: 387 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLKD 422
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREEAAYTMFLDLKRKGNNFVDGITHSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + AE L+K +R LV NL
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWAEKLMKHIRDGNLVPNL 165
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 102/248 (41%), Gaps = 19/248 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
++N K G NS L+ L +E + S VID+L + G + A + ++ME
Sbjct: 214 GPVLNRLCKSG-NSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME 272
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
+ G D TY SL+ + + +L++M + +N+ ++V FS + D
Sbjct: 273 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM----IGRNIIPDVVT---FSALID-- 323
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
F L++ A+ L EM NS I FCK + +A +++ M
Sbjct: 324 -VFVKEGKLLE----AKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVS 378
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
P + T+ L+ + + D L+ R I S L + Y TL+L F Q G
Sbjct: 379 KGCEPDIVTYSILINSYCKAKRVDDGMRLF----REISSKGLIPNTITYNTLVLGFCQSG 434
Query: 588 YFERVMEV 595
E+
Sbjct: 435 KLNAAKEL 442
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 122/294 (41%), Gaps = 44/294 (14%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++NG K G + +L++ LL+ + + + + +ID+L + ++ A ++ +ME
Sbjct: 155 VVNGLCKRG-DIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK 213
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC------------EMVVS 457
G + TY SL++ + +A LL M + + NL + V +
Sbjct: 214 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA 273
Query: 458 ERFSEVADKSA---------SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
E+ + K + S + + D+ D A+ + + M + + N+ I
Sbjct: 274 EKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKG 333
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-------IK 561
FCK K + D +++R M + T+ L+ G ++ D GD K
Sbjct: 334 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG-----LFHD-----GDCDNAQKVFK 383
Query: 562 RNIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + G V D+ Y LL G E+ +EV YM+K + +D +Y +
Sbjct: 384 QMVSDG---VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 434
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 20/213 (9%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
++D M G+ D+ T+ +L+ + EA AL+ +M + NL VV
Sbjct: 101 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLC 160
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
+ D DLA +L+ +M + + N+ I CK + + DAL +
Sbjct: 161 KRGD--------------IDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNL 206
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLL 580
++ M+ IRP V T+ L+ S + D + L D I++ I ++ + L+
Sbjct: 207 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT-----FNALI 261
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
F++ G F ++ M K+++ D Y S
Sbjct: 262 DAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNS 294
>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 821
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 31/218 (14%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G + A +L +M G D TY +L+ A+ K A L ++M+++ + N C
Sbjct: 402 GGITRAMSLLREMATKGCIPDVVTYATLIDAFSKRMEPERALKLFQEMKEANVKPNNYCY 461
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
+ F A + + A ++ +EM E + ++ N+ I F K +
Sbjct: 462 SSLISAFCR-----AGYVER---------ALAIFEEMTHERIVPDVFAFNALIDGFGKLR 507
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHS-------SLEMYRDITILWGDIKRNIES 566
+ A +IY RM++++I+P TF L+ +LE D+T ++G
Sbjct: 508 QVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKNSIRALEAMGDMTEIYG-------- 559
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
L R Y L+ + G F + EV M+ + +
Sbjct: 560 --LTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGI 595
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 28/286 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+ K GK E L +KK+ + T + +I L++L L+ A ++ + ME
Sbjct: 373 LIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTY-NTLICGLLRLNRLDEALELFNSMESL 431
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-SCEMVV-----------S 457
G + TY + Y K +A ++M+ + +V N+ +C + +
Sbjct: 432 GLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEA 491
Query: 458 ERFSEVADKSASFTDTSS---LM------DKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
+ F K D + LM + D A L+ EM E + +NS I
Sbjct: 492 KEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDT 551
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW-GDIKRNIESG 567
K + +A K+++RM+EMK+ PTV T+ L+ G ++ T L+ G I +
Sbjct: 552 LYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPN 611
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++ + TLL + G + ++++ M + N + D L Y +
Sbjct: 612 TIS-----FNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNT 652
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 21/181 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID L++LG LE A ++M G + Y L+ + K A L ++M K
Sbjct: 899 LIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEG 958
Query: 446 LVQNL-------SCEMVVSE-----------RFSEVADKSASFTDTSSLMDKSDLAE--- 484
+ +L C +V + + S + + + + +S E
Sbjct: 959 IRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEAL 1018
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
SL EMR +Y N+ I M+ +A K+Y +Q + P V T+ L+ GH
Sbjct: 1019 SLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGH 1078
Query: 545 S 545
S
Sbjct: 1079 S 1079
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 73/196 (37%), Gaps = 49/196 (25%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ + +L + G LE A + + ++ G D+ TY L+ Y K +A LL +M
Sbjct: 475 CNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEME 534
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
++ E+V+ S DT D+ D A + Q M+E T+
Sbjct: 535 EN----GCDPEVVIIN----------SLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTY 580
Query: 503 NS-----------------------------SIYF------FCKGKMIGDALKIYRRMQE 527
N+ +I F CK + ALK+ RM E
Sbjct: 581 NTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTE 640
Query: 528 MKIRPTVETFYYLVYG 543
M P V T+ ++YG
Sbjct: 641 MNCFPDVLTYNTVIYG 656
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 94/251 (37%), Gaps = 22/251 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+ GK + L L +K H T + ++D G L+A + +ME
Sbjct: 303 LIDALCNAGKLNNAKELFLKMKASSHKPDRVTYIT-LLDKFSDHGDLDAIKEFWSEMEAD 361
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS------CEMVVSERFSEV 463
G+ D T+ L+ A KV EA L M+K + NL C ++ R E
Sbjct: 362 GYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEA 421
Query: 464 ADKSAS---------------FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
+ S F D +S A ++M+ + I N+S+Y
Sbjct: 422 LELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYS 481
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
+ + +A + + +++ + P T+ L+ + D L +++ N
Sbjct: 482 LAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPE 541
Query: 569 LAVSRDLYETL 579
+ + L +TL
Sbjct: 542 VVIINSLIDTL 552
>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1023
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 88/202 (43%), Gaps = 25/202 (12%)
Query: 348 AKLINGYKKHGKNSELSWLL-----LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
+ ++ G+ +HGK +E + L + + H S+ + +I++L + G + A ++
Sbjct: 360 SSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSY------ATIINSLFKSGRVMEAFNL 413
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462
M + G D T +++ +KV +EAE + + + K L N
Sbjct: 414 QSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCV----------- 462
Query: 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
++ D + K +LAE ++Q+M +E + +S I + K M+ A+ +
Sbjct: 463 ---TYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVL 519
Query: 523 RRMQEMKIRPTVETFYYLVYGH 544
R M + + P + L+ G+
Sbjct: 520 REMVQRNVMPNTIVYAILIDGY 541
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 21/200 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDM 406
+IN Y GK + L I E S+G + + +I L + G +E A LD+M
Sbjct: 676 IINTYCIKGKTEDA----LDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEM 731
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ T+K L+ AY + + +A+ +L Q+ + + L + V V +
Sbjct: 732 LVMEFVPTPITHKFLVKAYSRSE---KADKIL-QIHEKLVASGLELSLTVYNTLITVFCR 787
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ + A+ ++ EM + + + N+ I +C G + ALK Y +M
Sbjct: 788 ----------LGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMF 837
Query: 527 EMKIRPTVETFYYLVYGHSS 546
I P + T+ L+ G S+
Sbjct: 838 VDGIAPNITTYNTLLGGLSN 857
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 87/193 (45%), Gaps = 16/193 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHS---FGESTLCSDVIDALIQLGFLEAAHDILDDM 406
L+ GY + G W++ ++ + G +TL ID + G + A +++++
Sbjct: 203 LVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTL----IDGYCEAGLMSQATELIENS 258
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVSERFSEVAD 465
+ +D TY +LL A+ K AE+L ++ ++ L VV++ +E+ +
Sbjct: 259 WRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQ--NEIKN 316
Query: 466 KSASFTDTSSLMDK------SDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
+ ++L+ + + SL ++M + + +S +Y FC+ + +A
Sbjct: 317 LQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAA 376
Query: 520 KIYRRMQEMKIRP 532
++R M EM + P
Sbjct: 377 VLFREMYEMGLDP 389
>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
Length = 394
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 25/224 (11%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
S + LI+G KH ++ E L + + + + I L + G L+ A +
Sbjct: 153 SGSLYSTLIDGLCKHDRHEEARELF---EMAAGDVQDVIVYTSFISGLCKAGKLDEAKAV 209
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ-MRKSCLVQNLSCEMVVS---- 457
M AG D +Y ++ + K EA+ L+ Q M + C+ C ++V
Sbjct: 210 HVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCK 269
Query: 458 -----------ERFSEVADKSASFTDTSSLMD------KSDLAESLIQEMREEAALSTIY 500
ER E D++ S S+++D + D A ++Q+MR + +
Sbjct: 270 SRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVV 329
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ I FCK + +A ++++RM E V + L+ G+
Sbjct: 330 TYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGY 373
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 92/237 (38%), Gaps = 24/237 (10%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK----------SCL 446
E H I ++M GH + TY +++ Y K +A +L+++++ S L
Sbjct: 101 EQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTL 160
Query: 447 VQNLSCEMVVSERFSEVADKSA----------SFTDTSSLMDKSDLAESLIQEMREEAAL 496
+ L C+ E E+ + +A SF K D A+++ +M E
Sbjct: 161 IDGL-CKHDRHEEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCA 219
Query: 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
N IY CK + +A ++ + E K P V LV G + ++
Sbjct: 220 PDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVI 279
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++R +E+G A S Y ++ + + V+ M++ D + Y +
Sbjct: 280 ---LERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTA 333
>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 102/257 (39%), Gaps = 41/257 (15%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID L + G L+ A ++ ++ME+ G D Y +L+ + + + LL+ M K
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310
Query: 444 --------------SCLV--------QNLSCEMVVSERFSEVADKSASFTDTSSLMDKSD 481
C V + L EM + S S D ++ D
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEM-IQRGISPDTVTYTSLIDGFCKENQLD 369
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
A ++ M + I N I +CK +I D L+++R+M + T+ L+
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLI 429
Query: 542 YGHSSL-------EMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVME 594
G L E+++++ + R + +++ Y+ LL G E+ +E
Sbjct: 430 QGFCELGKLEVAKELFQEM------VSRRVRPDIVS-----YKILLDGLCDNGEPEKALE 478
Query: 595 VIGYMKKQNMYVDKLMY 611
+ ++K M +D +Y
Sbjct: 479 IFEKIEKSKMELDIGIY 495
>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59900
gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 907
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 112/274 (40%), Gaps = 27/274 (9%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGEST---LCSDVIDALIQLGFLEAA 399
S A++ L+ G +K GK E L++ K FG S + + +ID+L + A
Sbjct: 331 SEAAVSSLVEGLRKRGKIEEA----LNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEA 386
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
+ D M G + TY L+ + + A + L +M + L ++
Sbjct: 387 ELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVY-------P 439
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
++ + + F D S+ AE + EM + T+ S + +C I AL
Sbjct: 440 YNSLINGHCKFGDISA-------AEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKAL 492
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYET 578
++Y M I P++ TF L+ G + RD L+ ++ N++ +R Y
Sbjct: 493 RLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKP-----NRVTYNV 547
Query: 579 LLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
++ + + G + E + M ++ + D Y+
Sbjct: 548 MIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYR 581
>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
Length = 1184
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 326 MEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD 385
ME K+ LV + L L++GY GK ++ L+ ++K F + C
Sbjct: 253 MEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRK--RGFEPNVNCYT 310
Query: 386 V-IDALIQL-GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
V I AL + ++ A + +ME G D TY +L++ + K M + ++L MRK
Sbjct: 311 VLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRK 370
Query: 444 SCLVQNLSCEMVV------SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
++ + M + E+F E + LI++M+
Sbjct: 371 KGVMPSQVTYMQIMVAHEKKEQFEECLE--------------------LIEKMKRRGCHP 410
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546
+ N I CK + +A++++ M+ + P V+TF ++ G +S
Sbjct: 411 DLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTS 459
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 13/169 (7%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G L A ++L M+ AG D + +LL+ Y +A L+ MRK N++C
Sbjct: 250 GKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCY 309
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
V+ + + T MD+ A + EM + I + I FCK
Sbjct: 310 TVLIQ----------ALCRTEKRMDE---AMRVFVEMERYGCEADIVTYTALISGFCKWG 356
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
MI + M++ + P+ T+ ++ H E + + L +KR
Sbjct: 357 MIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKR 405
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 102/227 (44%), Gaps = 20/227 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++DAL + G ++ A + +DM P + + SLL + + EA+ +L QM+++
Sbjct: 208 LLDALCKNGSVKEASKVFEDMR-EKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEA- 265
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L ++VV F+ + + + + D DL + +MR+ +
Sbjct: 266 ---GLEPDIVV---FTNLL---SGYAHAGKMADAYDL----MNDMRKRGFEPNVNCYTVL 312
Query: 506 IYFFCKG-KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
I C+ K + +A++++ M+ + T+ L+ G M + D+++
Sbjct: 313 IQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKK- 371
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
GV+ S+ Y +++ + FE +E+I MK++ + D L+Y
Sbjct: 372 --GVMP-SQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIY 415
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 18/220 (8%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G L++A ++ +M++ G D TY L+ A K +EA + M + L N+
Sbjct: 114 GQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTY 173
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
++ + F +V + D+A L EM+ ++ N + C
Sbjct: 174 NLLMDAFRKVG--------------QLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAG 219
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR 573
+G A K++ +M P T+ LV G + ++ ++ ++ GV AV
Sbjct: 220 RVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREM---VDRGV-AVDL 275
Query: 574 DLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y +LL + G +RV +++ M ++ + D + +
Sbjct: 276 VNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNT 315
>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Vitis vinifera]
Length = 624
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 100/232 (43%), Gaps = 15/232 (6%)
Query: 330 QELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDA 389
QE N +++ + + + L+ G+ G +SE L ++ E + + +++A
Sbjct: 205 QEFFDKVNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMR-ERGCAVDVVAYNSLLEA 263
Query: 390 LIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN 449
L + G ++ A+ + +M G D+ +Y + AY +V A +L +MR+ LV N
Sbjct: 264 LCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPN 323
Query: 450 LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFF 509
+ + ++ + +K D A L+ EM E ++ N+ F
Sbjct: 324 VFTYNCIVKKLCKS--------------EKVDEAYQLLDEMIERGVSPDLWSYNAIQAFH 369
Query: 510 CKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
C + AL++ RM++ P T+ ++ + + +T +WG ++
Sbjct: 370 CDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGME 421
>gi|224138172|ref|XP_002326536.1| predicted protein [Populus trichocarpa]
gi|222833858|gb|EEE72335.1| predicted protein [Populus trichocarpa]
Length = 697
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 114/266 (42%), Gaps = 26/266 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+++ Y G+ E + + ++ K+ + S S +I+ L + +E A ++L M
Sbjct: 441 IVDQYCSRGQFEE-ALIYINQMKDQNILPNSYTYSVIINWLCKYQAVEKAWEVLPVMFKD 499
Query: 410 GHPMDSTTYKSLLTAYYK-VKMFREAEALLKQMRK-SCLVQNLSCEMVVSERFSEVADKS 467
Y +++ Y K K +A L ++M K C N++ ++V
Sbjct: 500 NIFPSVIHYTTIMDGYAKQFKNPMKAWKLYRKMPKLGCKPDNVTLTVLV----------- 548
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
D S K A +L +EM EE + + I +C+ + A +Y++M+
Sbjct: 549 ----DMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRAWSMYKKMKR 604
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNFLQ 585
+ P V+T+ LV G L+ T+L D+KRN +V+ D+ Y L+ + +
Sbjct: 605 NNVTPNVKTYTCLVDGFCKLKRLDMATMLIDDMKRN------SVTPDVKTYTALIAGYQR 658
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMY 611
+R EV MKK+ D + Y
Sbjct: 659 IENIDRAYEVFDEMKKKGTLPDHIAY 684
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 86/220 (39%), Gaps = 22/220 (10%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+E A IL++ME G TY + +V +A ++ +R S N+ C
Sbjct: 206 MEQASLILEEMEEKGENPTVVTYGVYIHGLCRVGSIEDAWNKIQDLRSSNQPLNIYCYNA 265
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+ + F + + D A L++EM++E IY + + FC I
Sbjct: 266 LIQGFCQKG--------------RPDEALKLLEEMKDEGISPDIYSYSILVNAFCTEGDI 311
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL 575
+ + + M+ +P + ++ G + + D + ++ DL
Sbjct: 312 ESGMNLIQEMEHCNKKPPLVCCTSVLMGLRTKGLVNDCLNFFHELSAK------GYKHDL 365
Query: 576 --YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y TL+ FL+G + ++ M+K + D ++Y S
Sbjct: 366 ISYSTLIHGFLKGHNVKSANNLVHEMRKNGLVPDYIIYIS 405
>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
[Vitis vinifera]
gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
Length = 878
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
ES+L D +D+ L DM +AG ++ T L+ F +A +
Sbjct: 124 ESSLREDKVDSFSWL---------YKDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREVF 174
Query: 439 KQMR-KSCLVQNLS--------CEMVVSERFSEVADKSASF----------TDTSSLM-- 477
+M K C S C +S R E+ D SF T SS
Sbjct: 175 DKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVIYNTLISSFCRE 234
Query: 478 DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ---EMKI-RPT 533
+++ AE L++ MRE+ + NS I C I +A +I+R MQ E+ + RP
Sbjct: 235 GRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEELGLPRPN 294
Query: 534 VETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ TF ++ G M + L +KRN
Sbjct: 295 ITTFNLMLEGFCKEGMLEEAKTLVESMKRN 324
>gi|255661060|gb|ACU25699.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
gi|255661062|gb|ACU25700.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 429
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHH--SFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + +NS W S+ + + GE + D+++ + + G L
Sbjct: 224 SSPYMDMLANKFTSYSQNS---WKPFSLARGVRVTAKGEGSFDLDMVNTYLSIFLAKGKL 280
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F+EA ++L M ++ +++ V+
Sbjct: 281 SVACKLFEIFTNMGVDPASFTYNSIMSSFVKRGYFKEAWSVLHAMGETVYPADIATYNVI 340
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 341 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 386
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS +D
Sbjct: 387 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLKD 422
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREEAAYTMFLDLKRKGNNFVDGISYSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + L+K +R LV +L
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWGGKLMKHIRDGNLVPDL 165
>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
Length = 1315
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 103/250 (41%), Gaps = 26/250 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEA-LLKQMRKS 444
+I ++ +E A ++ D+M G DS TYK ++ Y + EA+ + + M +
Sbjct: 802 IILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERG 861
Query: 445 CLVQNLS--------CEMVVSERFSEVADKSASFTDTSSLMDKSDL------------AE 484
+V N + CE + R K + +L++ S + A
Sbjct: 862 FVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAF 921
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM-QEMKIRPTVETFYYLVYG 543
L++EM + +Y S I+ CK A +++ ++ + +P V T+ ++ G
Sbjct: 922 ELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISG 981
Query: 544 HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
+ E +L+ +K E G L + + Y TL+ + G F + E++ M +
Sbjct: 982 YCKEEKLSRAEMLFERMK---EQG-LVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEG 1037
Query: 604 MYVDKLMYKS 613
+ + Y S
Sbjct: 1038 FFPNTCTYNS 1047
Score = 38.9 bits (89), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 91/207 (43%), Gaps = 24/207 (11%)
Query: 341 LHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAH 400
+H+ AM I+GY K K S + +L KE + + +ID + G A+
Sbjct: 972 VHTYTAM---ISGYCKEEKLSR-AEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAY 1027
Query: 401 DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ-MRKSCLVQNLSCEMVVSER 459
++++ M G ++ TY S++ K EA LL + ++ +++SE+
Sbjct: 1028 ELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQ 1087
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLI--QEMREEAALSTIYKLNSSIYFFCKGKMIGD 517
++D+ ++L+ +M + I+ + I FC+ M+ D
Sbjct: 1088 -----------------CKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKD 1130
Query: 518 ALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ K++ + ++ + PT ET+ ++ G+
Sbjct: 1131 SEKLFDEVIKLGLAPTKETYTSMICGY 1157
>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 716
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 112/268 (41%), Gaps = 28/268 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+N Y + G SE L+ + + G T + +I+ L + G E A +LD+M
Sbjct: 265 LVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTY-NALINGLCKEGSYERAKRVLDEMLGV 323
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL---SCEMVVSERFSEVADK 466
G ++ T+ +L + + EAE + +M + +V +L S + V R E+
Sbjct: 324 GLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRA 383
Query: 467 SASFTDTSSL------------------MDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
A F + D A + EM E + + N+ +
Sbjct: 384 LAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNG 443
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH-SSLEMYRDITILWGDIKRNIESG 567
C+GKM+ DA ++++ M E + P T L++G+ M + +++ R+++
Sbjct: 444 LCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPD 503
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEV 595
V+ Y TL+ F + G E+ E+
Sbjct: 504 VVT-----YNTLMDGFCKVGEMEKAKEL 526
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LING+ G SE ++ L KE C+ +I ++ G L A+D L+ M
Sbjct: 545 LINGFCSLGLVSE-AFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISE 603
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
G P D TY +L+ ++ K + F A L+ M + L+ NL + FS
Sbjct: 604 GVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFS 655
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 124/311 (39%), Gaps = 44/311 (14%)
Query: 327 EGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDV 386
EG + L R S A L+ K G +L+W K + F +S +V
Sbjct: 172 EGSEAFQLLRKRGFCVSINACNALLGAIVKVGW-VDLAW------KVYEDFVKSGNIVNV 224
Query: 387 ------IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
++AL + G L+ L +ME G D TY +L+ AY + + EA L+
Sbjct: 225 YTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDC 284
Query: 441 MRKSCLVQNLS---------CEMVVSERFSEVADK---------SASFTDT-SSLMDKSD 481
M L L C+ ER V D+ +A+F K D
Sbjct: 285 MAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKED 344
Query: 482 L--AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
+ AE + EM + + + +S + F + +G AL + +M+ + + P +
Sbjct: 345 VWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTI 404
Query: 540 LVYGHSSLEMYRDITILWGDIK-RN--IESGVLAVSRDLYETLLLNFLQGGYFERVMEVI 596
L+ G+ + D++ G +K RN +E G + + Y TLL +G + E+
Sbjct: 405 LINGYCRND---DVS---GALKMRNEMVERGCV-MDVVTYNTLLNGLCRGKMLDDADELF 457
Query: 597 GYMKKQNMYVD 607
M ++ ++ D
Sbjct: 458 KEMVERGVFPD 468
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 50/250 (20%), Positives = 104/250 (41%), Gaps = 31/250 (12%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+ A + ++M G MD TY +LL + KM +A+ L K+M + + +
Sbjct: 415 VSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTT 474
Query: 456 VSERFSEVAD--KSASFTDT-------------SSLMD------KSDLAESLIQEMREEA 494
+ + + + K+ S +T ++LMD + + A+ L +M
Sbjct: 475 LIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISRE 534
Query: 495 ALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH---SSLEMYR 551
+ + I FC ++ +A +++ M+E I+PT+ T ++ G+ +L
Sbjct: 535 IFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKAN 594
Query: 552 DITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
D + I GV Y TL+ +F++ F+R +I M+++ + + + Y
Sbjct: 595 DF------LNTMISEGV-PPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTY 647
Query: 612 KSEFLKHHKH 621
+ +H
Sbjct: 648 NAILGGFSRH 657
Score = 39.3 bits (90), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 75/196 (38%), Gaps = 22/196 (11%)
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE 458
A + ++M G D ++ S++ + + A A ++M+ LV + ++
Sbjct: 348 AERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILIN 407
Query: 459 RFSEVADKSASFTDTSSLMDKS---------------------DLAESLIQEMREEAALS 497
+ D S + + ++++ D A+ L +EM E
Sbjct: 408 GYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFP 467
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
Y L + I+ +CK + AL ++ M ++P V T+ L+ G + LW
Sbjct: 468 DFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELW 527
Query: 558 GD-IKRNIESGVLAVS 572
D I R I ++ S
Sbjct: 528 YDMISREIFPSYISFS 543
>gi|357463937|ref|XP_003602250.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491298|gb|AES72501.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 946
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/241 (19%), Positives = 106/241 (43%), Gaps = 33/241 (13%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY-YKVKMFREAEALLKQM 441
C+ +I+ L++ + A +I D ++ G + TY ++ A K ++A + +M
Sbjct: 197 CNFLINRLVKCDQVNMAFEIFDRIKSLGLCPNHHTYAIIIKALGTKGGDLKQASGVFDEM 256
Query: 442 RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYK 501
+++ + N C A++ + +SDL L++ +RE A +Y
Sbjct: 257 KEAGVTPNSYC--------------YAAYIEGLCNNHQSDLGYDLLRALRENNAPIDVYA 302
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH-------SSLEMYRDIT 554
+ I FC + A++++ M+ ++ P + L+ G+ +L++Y D+
Sbjct: 303 YTAVIRGFCNEMKLDKAMQVFYDMEWQRLVPDCHVYSSLICGYCKTHDLVKALDLYEDM- 361
Query: 555 ILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSE 614
I + I++ + VS +L F + G RV++ +K+ +++D + Y
Sbjct: 362 -----ILKGIKTNCVIVS-----CILHCFAEMGEDSRVVDTFKEVKQSGVFLDGVAYNIV 411
Query: 615 F 615
F
Sbjct: 412 F 412
>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
Length = 813
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 100/229 (43%), Gaps = 20/229 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
VID + G + A D+ ++M G D +TY ++ A K + +AEA+L+QM K
Sbjct: 222 VIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKG 281
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
L N + ++ ++ T + A + ++M + L + LNS
Sbjct: 282 VLPDNWTYNSLIY-----------GYSSTGQWKE----AVRVSKKMTSQGILPDVVTLNS 326
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
+ CK I DA ++ M + + ++ ++ G+++ D+T L+ + +
Sbjct: 327 LMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLM---L 383
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G+ A ++ L+ + + G +R + M++Q + D + Y +
Sbjct: 384 SDGI-APDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYST 431
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 99/230 (43%), Gaps = 40/230 (17%)
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFL 396
+L N LI GY G+ E + + K+ S G + + ++ +L + G +
Sbjct: 282 VLPDNWTYNSLIYGYSSTGQWKEA----VRVSKKMTSQGILPDVVTLNSLMASLCKHGKI 337
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
+ A D+ D M + G D +YK +L Y K CLV +
Sbjct: 338 KDARDVFDSMAMKGQKTDIFSYKIMLNGYAT---------------KGCLVD-------L 375
Query: 457 SERFS-EVADKSASFTDTSSLMDKS-------DLAESLIQEMREEAALSTIYKLNSSIYF 508
+E F+ ++D A + +++ K+ D A + EMRE+ + ++ I
Sbjct: 376 TELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAA 435
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEMYRDITI 555
C+ + DA++ + +M + + P++ T+++L+ G H L +D+ +
Sbjct: 436 LCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVL 485
>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Brachypodium distachyon]
Length = 597
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 14/156 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I L Q G L+ A + M+ AG +D+ Y L+ + + K EA LL +M+++
Sbjct: 359 MISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAG 418
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L ++ + + D A + L+ +M + ++ +
Sbjct: 419 LQPDVYTYNTLLSGLCKAGDFLA--------------VDELLGKMIDGGCRPSVVTFGTL 464
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
I+ +CK I +AL+I+R M E I+P + L+
Sbjct: 465 IHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLI 500
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 92/228 (40%), Gaps = 28/228 (12%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEM 454
++AA ++D+M P D+ +Y +LL Y ++ EA+ L K+M KSCL ++
Sbjct: 270 VDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTC 329
Query: 455 VV----------SERFSEVADKSASFTDTS-----------SLMDKSDLAESLIQEMREE 493
+V RF K+A+ D S + A IQEM
Sbjct: 330 LVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIAR 389
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL-EMYRD 552
+S I CK + A+++ + M ++ P+V TF ++ L +M
Sbjct: 390 NVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEA 449
Query: 553 ITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
+L +E G++ Y TLL F + G E E+ M+
Sbjct: 450 WKLLVAMAAHGLEPGMVT-----YTTLLEGFSRTGRMEIAYELFEVMR 492
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 94/210 (44%), Gaps = 14/210 (6%)
Query: 335 FRNGKLLHSNRAM-AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL 393
R+GK + + + +ING+ K G+ +L + + + V+D L +
Sbjct: 67 MRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRD 126
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G ++ A +++ +M+L G D T+ +L+T + + EA L K++ S + +
Sbjct: 127 GKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTS---SSWKPD 183
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
+V ++ + D F + +L + A ++ M + + +S ++ CK
Sbjct: 184 VVT---YTALID---GFCKSGNL----EKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAG 233
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ AL ++RRM P V T+ L++G
Sbjct: 234 DLDQALDLFRRMTSKGCVPNVVTYTTLIHG 263
>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
Length = 1161
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 94/424 (22%), Positives = 168/424 (39%), Gaps = 80/424 (18%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD--AHSIIILAQIHEMNCQ----- 227
PD + ++L R G L I+++M + GVV D A++ ++ I+E +
Sbjct: 678 PDIHTYTILLSGFCRKGKILPALVILQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYV 737
Query: 228 -RDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNP 286
+ + K Y D ++ Y SL++ + K +++ ++ DM + E PN
Sbjct: 738 FHEIICKEGLYADCIA----------YNSLMNGYLKSRNVNTIKRMMSDMYQ-NEVYPNS 786
Query: 287 -----------KLRQDAQKPYLI------SIGSPNL----------RCGLKLQIMPELLE 319
K Q ++ YL I N+ CGL + I + LE
Sbjct: 787 ASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGL-IDIAVKFLE 845
Query: 320 KDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGE 379
K + +EG + LI + + K + +K H S
Sbjct: 846 K---MVLEG-----------IFPDRLVFDILITAFSEKSKMHNALQVFNCMKWLHMSPSS 891
Query: 380 STLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK 439
T S +I+ LI+ G+L+ +H +L +M G + T Y +L+ A +V A L +
Sbjct: 892 KTF-SAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKE 950
Query: 440 QMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLI--QEMREEAALS 497
+M+ +V +EVA+ S L L E++I M +
Sbjct: 951 EMKAIGIVP------------AEVAESSI----IRGLCRCGKLEEAVIVFSSMMRSGMVP 994
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
T+ + ++ CK I DAL + R M+ ++R V ++ L+ G + D L+
Sbjct: 995 TVATFTTLMHSLCKESKIADALHLKRLMELCRLRVDVVSYNVLITGLCKDKHISDALDLY 1054
Query: 558 GDIK 561
G++K
Sbjct: 1055 GEMK 1058
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 111/265 (41%), Gaps = 22/265 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+N +G+ + +L +K H S S + ++ ++ G +AA +L+DME
Sbjct: 232 LLNSLCTNGEFRKAEDMLQKMKSCHIS--NSVTYNTILHWYVKKGRFKAALCVLEDMERD 289
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVSERFSEVADKSA 468
D TY ++ ++K A LLK+MRK L + + +++ F E
Sbjct: 290 SVQADVYTYNIMIDKLCRIKRSTRAFLLLKRMRKDDLTPDECTYNTLINGFFRE------ 343
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
K + A + M + + ++ + I +C+ + I AL I MQ
Sbjct: 344 ---------GKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILSEMQIT 394
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588
+ P+ T+ L+ G+ + M L D+K S + +++ + L+ F Q G
Sbjct: 395 GVMPSELTYSALLNGYCKVSMLGPAIYLMEDLK----SRGITINKTMRTILIDGFCQVGE 450
Query: 589 FERVMEVIGYMKKQNMYVDKLMYKS 613
+ +++ M + + D + Y +
Sbjct: 451 ISKAKQILKSMFEDGIDPDVITYSA 475
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/262 (20%), Positives = 112/262 (42%), Gaps = 19/262 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LING+ + GK + ++ + +++ +T + +ID + ++ A IL +M++
Sbjct: 336 LINGFFREGKINHARYVFNHMLRQNLVPSVATY-TTMIDGYCRNRRIDKALSILSEMQIT 394
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G TY +LL Y KV M A L++ ++ + N + ++ + F +V + S
Sbjct: 395 GVMPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVGEISK- 453
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
A+ +++ M E+ + ++ I C+ + + +I RMQ+
Sbjct: 454 -------------AKQILKSMFEDGIDPDVITYSALINGMCRMAKMHETKEILSRMQKSG 500
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
I P + L+ + ++ + DI R G++A + ++ LL F + G
Sbjct: 501 ILPNDVLYTTLICYYCKAGYVKEALKHFVDIYRR---GLVA-NPVIHNALLHAFYREGMI 556
Query: 590 ERVMEVIGYMKKQNMYVDKLMY 611
YM + N+ D + +
Sbjct: 557 TEAEHFRQYMSRMNISFDSVSF 578
>gi|357483069|ref|XP_003611821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513156|gb|AES94779.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 749
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 86/183 (46%), Gaps = 27/183 (14%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ V++ ++G LE A + ++ G ++ +Y SL+ A++K + +REA A +M
Sbjct: 227 CNVVLNGFCKMGRLEEALSFVWMIKNDGFSLNRNSYASLINAFFKARRYREAHACYTKMF 286
Query: 443 K----------SCLVQNLSCEMVVS------ERFSEVADKSASFTDTSSLMDKSDL---- 482
K + +++ LS E V E +++ S+ + + D+
Sbjct: 287 KEGIVPDVVLYAIMIRGLSKEGRVGEAAKMLEEMTQIGLTPDSYCYNAVIQGLCDVDLLN 346
Query: 483 -AESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
A+SL E+ E + TI I CK M+ +A +++ +M+++ P+V TF L
Sbjct: 347 RAQSLSLEISEHNVCTHTIL-----ICEMCKRGMVAEAQELFNQMEKLGCEPSVVTFNTL 401
Query: 541 VYG 543
+ G
Sbjct: 402 ING 404
>gi|410110123|gb|AFV61141.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
macrophylla]
Length = 381
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 110/237 (46%), Gaps = 20/237 (8%)
Query: 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
G+ L S++I+ +L A I ++ +G D Y +++ + K K+FREA +L
Sbjct: 2 GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSL 61
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
+ +M+ + ++ N + + + E + F + A S+ EMRE L
Sbjct: 62 ISEMKTAGVMPNTTSYSTLLTMYVE----NKKFLE----------ALSVFSEMREIKCLL 107
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ N I + + M +A K++ M++M I P V ++ L+ + E++ + L+
Sbjct: 108 DLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 167
Query: 558 GDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++R NIE V+ Y ++++ + + E+ +I M+ + + + + Y +
Sbjct: 168 RLMQRKNIEQNVVT-----YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYST 219
>gi|242054647|ref|XP_002456469.1| hypothetical protein SORBIDRAFT_03g036880 [Sorghum bicolor]
gi|241928444|gb|EES01589.1| hypothetical protein SORBIDRAFT_03g036880 [Sorghum bicolor]
Length = 392
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/221 (19%), Positives = 94/221 (42%), Gaps = 24/221 (10%)
Query: 332 LVLFRNGKLLH----------SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGEST 381
+VLF LL S R++ LI G ++E + + + H +
Sbjct: 113 IVLFGQANLLPDAISTFQSSPSTRSLNALIFACIVSGNHTEAARVFQTFPDAHGVKPNTE 172
Query: 382 LCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM 441
+ +I + + G + + + + D+M G ++TT+ + L +YK + F + +L+ M
Sbjct: 173 TFNAIIKSFAESGTIRSFYSVFDEMCKKGLKPNATTFTTALAGFYKEERFDDVGKVLELM 232
Query: 442 RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYK 501
+K+ ++L V + + + +S A +L+ EM ++ +
Sbjct: 233 KKNGCGESLPVYNVRVQSLCK--------------LGRSGEARALVDEMVKKGTKPSWVT 278
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
N IY FCK + +A ++Y+ M + + ++ L++
Sbjct: 279 YNHLIYGFCKEGDLEEAKRLYKEMGRKGLVGDINFYFMLIH 319
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 121/287 (42%), Gaps = 30/287 (10%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
++NG K G + +L+ LL ++ + + + +ID L + ++ A + + ME
Sbjct: 224 GAVVNGLCKRG-DIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKME 282
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM--RK--------SCLVQNLSCE--MV 455
G D TY SL++ + +A LL M RK S L+ E +V
Sbjct: 283 TKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLV 342
Query: 456 VSER-FSEVADKS--------ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506
+E+ + E+ +S +S + + D+ D A+ + + M + + N+ I
Sbjct: 343 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 402
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566
FCK K + + ++++R M + + T+ L+ G L D + K+ +
Sbjct: 403 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG---LFQAGDCDMAQKIFKKMVSD 459
Query: 567 GVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
G V D+ Y LL + G E+ + V Y++K M D Y
Sbjct: 460 G---VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTY 503
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 20/216 (9%)
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE 458
A ++D M G+ D+ T+ +L+ + EA AL+ QM + +L V
Sbjct: 169 AVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVN 228
Query: 459 RFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDA 518
+ D DLA SL+++M + + + N+ I CK K I DA
Sbjct: 229 GLCKRGD--------------IDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDA 274
Query: 519 LKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYE 577
++ +M+ IRP V T+ L+ + + D + L + I+R I V+ S
Sbjct: 275 FALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFS----- 329
Query: 578 TLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
L+ F++ G ++ M K+++ D Y S
Sbjct: 330 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 365
>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 100/232 (43%), Gaps = 15/232 (6%)
Query: 330 QELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDA 389
QE N +++ + + + L+ G+ G +SE L ++ E + + +++A
Sbjct: 178 QEFFDKVNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMR-ERGCAVDVVAYNSLLEA 236
Query: 390 LIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN 449
L + G ++ A+ + +M G D+ +Y + AY +V A +L +MR+ LV N
Sbjct: 237 LCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPN 296
Query: 450 LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFF 509
+ + ++ + +K D A L+ EM E ++ N+ F
Sbjct: 297 VFTYNCIVKKLCKS--------------EKVDEAYQLLDEMIERGVSPDLWSYNAIQAFH 342
Query: 510 CKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
C + AL++ RM++ P T+ ++ + + +T +WG ++
Sbjct: 343 CDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGME 394
>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 707
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 20/219 (9%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
LE A + ++M+ +G T+ L+ A+ K EA LLK+M+ + L +++
Sbjct: 193 LEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKH----KGLEADLI 248
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
V F D L D ++L E+ E N+ I FCK +
Sbjct: 249 VYTSLIR------GFCDCGEL----DRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRL 298
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD-ITILWGDIKRNIESGVLAVSRD 574
+A +I+ M E +RP V T+ L+ G + ++ + +L ++++ E V+
Sbjct: 299 KEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVT---- 354
Query: 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y ++ + +E++ MKK+ D + Y S
Sbjct: 355 -YNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNS 392
Score = 38.9 bits (89), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 79/196 (40%), Gaps = 19/196 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC--SDVIDALIQLGFLEAAHDILDDME 407
LI+ + K GK E LL K+ H E+ L + +I G L+ + D++
Sbjct: 218 LIDAFCKAGKMDEAMGLL---KEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVL 274
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G + TY +L+ + K+ +EA + + M + + N+
Sbjct: 275 ERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVY--------------TY 320
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
D + K+ A L+ M ++ + N I CK ++ DAL+I M++
Sbjct: 321 TGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKK 380
Query: 528 MKIRPTVETFYYLVYG 543
+ RP T+ L+ G
Sbjct: 381 RRTRPDNITYNSLLGG 396
>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/254 (18%), Positives = 100/254 (39%), Gaps = 27/254 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+IDAL + ++ A +L M G D+ TY ++ Y + +EA + ++M+K
Sbjct: 306 IIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRG 365
Query: 446 LVQNL-SCEMVVSERFSEVADKSAS--FTDTSSLMDKSDLAE------------------ 484
L+ N+ +C ++ K A+ F ++ K D+
Sbjct: 366 LIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMI 425
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
L M+ + + I+ + K M+ DA+ I+ MQ+ + P V T+ ++
Sbjct: 426 GLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTF 485
Query: 545 SSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
S + D + + R I+ +Y +++ F G + E++ M +
Sbjct: 486 SRMGRLTDAMEKFNQMVARGIQPNTA-----VYSSIIQGFCMHGGLVKAKELVSEMINKG 540
Query: 604 MYVDKLMYKSEFLK 617
+ +++ S +
Sbjct: 541 IPRPDIVFFSSVIN 554
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 48/251 (19%), Positives = 99/251 (39%), Gaps = 29/251 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-R 442
+ +ID +G ++ A ILD ME+ G D TY +LL Y+K + L ++M R
Sbjct: 585 NSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQR 644
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
K ++ ++++ F ++ A EM E T+
Sbjct: 645 KGVKPNTVTYGIMLAGLFRA---------------GRTVAARKKFHEMIESGTTVTVSIY 689
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
+ C+ +A+ +++++ M ++ ++ ++ ++ + L+ I
Sbjct: 690 GIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATIS- 748
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ---------NMYVDKLMYKS 613
SG+L + Y +++N L+ G E + M+K N + L+ K
Sbjct: 749 --ASGLLP-NESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKG 805
Query: 614 EFLKHHKHLYR 624
E K +L +
Sbjct: 806 EIAKAGNYLSK 816
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/194 (18%), Positives = 79/194 (40%), Gaps = 15/194 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+I+GY G+ E + + +KK C+ + +L + G + A + D M
Sbjct: 341 MIHGYATLGRLKEAAKMFREMKKRGL-IPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAK 399
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
GH D +Y +LL Y F + L M+ + + N ++ +++
Sbjct: 400 GHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAK------- 452
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
++D + L + EM+++ + ++ I F + + DA++ + +M
Sbjct: 453 ----RGMVDDAML---IFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARG 505
Query: 530 IRPTVETFYYLVYG 543
I+P + ++ G
Sbjct: 506 IQPNTAVYSSIIQG 519
>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Glycine max]
Length = 511
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 118/268 (44%), Gaps = 31/268 (11%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G+ G E LL +K ++ + T + +IDAL + G ++ A +L M A
Sbjct: 238 LIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTF-NILIDALSKEGKMKEAKILLAVMMKA 296
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
D TY SL+ Y+ V + A+ + M + + ++ C
Sbjct: 297 CIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQC----------------- 339
Query: 470 FTDTSSLMDKS---DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+T+ + + K+ D A SL +EM+ + + I NS I CK + A+ + +RM+
Sbjct: 340 YTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMK 399
Query: 527 EMKIRPTVETFYYLVYG---HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNF 583
E I+P V ++ L+ G LE ++I +R + G ++ Y L+
Sbjct: 400 EQGIQPDVYSYTILLDGLCKSGRLEDAKEI------FQRLLAKG-YHLNVHAYTVLINRL 452
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ G+F+ +++ M+ + D + +
Sbjct: 453 CKAGFFDEALDLKSKMEDKGCMPDAVTF 480
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 24/218 (11%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSF-GESTLCSDVIDALIQLGFLEAAHDILDDM 406
LING K G+ ++ LL K E HS + + + +I++L + L A D+ +M
Sbjct: 166 GTLINGLCKTGETKAVARLLR--KLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEM 223
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS----- 461
+ G D TY +L+ + + +EA +LL +M+ + N+ ++ + S
Sbjct: 224 IVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKM 283
Query: 462 -----------EVADKSASFT-----DTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ K FT D L+D+ A+ + M + + +
Sbjct: 284 KEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNM 343
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
I CK KM+ +A+ ++ M+ + P + T+ L+ G
Sbjct: 344 INGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDG 381
Score = 38.9 bits (89), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 14/160 (8%)
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
L++++ + + N+ I CK K++GDA +Y M I P V T+ L++G
Sbjct: 184 LLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFC 243
Query: 546 SLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
+ ++ L ++K +NI V + L+ + G + ++ M K +
Sbjct: 244 IMGHLKEAFSLLNEMKLKNINPNVCT-----FNILIDALSKEGKMKEAKILLAVMMKACI 298
Query: 605 YVDKLMYKS--------EFLKHHKHLYRRLKVSNARTEAQ 636
D Y S + +KH K+++ + + Q
Sbjct: 299 KPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQ 338
>gi|358346363|ref|XP_003637238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503173|gb|AES84376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 88/202 (43%), Gaps = 25/202 (12%)
Query: 348 AKLINGYKKHGKNSELSWLL-----LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
+ ++ G+ +HGK +E + L + + H S+ + +I++L + G + A ++
Sbjct: 14 SSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSY------ATIINSLFKSGRVMEAFNL 67
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462
M + G D T +++ +KV +EAE + + + K L N
Sbjct: 68 QSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVT---------- 117
Query: 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
++ D + K +LAE ++Q+M +E + +S I + K M+ A+ +
Sbjct: 118 ----YSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVL 173
Query: 523 RRMQEMKIRPTVETFYYLVYGH 544
R M + + P + L+ G+
Sbjct: 174 REMVQRNVMPNTIVYAILIDGY 195
>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
Length = 703
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 19/166 (11%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK------SCLVQN 449
++ A D+ D M L G D +Y +L+ + + EA L +M + + LV+
Sbjct: 62 VDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDMHMYAALVKG 121
Query: 450 LSCE-------MVVSERFSEVADKS-----ASFTDTSSLMDKSDLAESLIQEMREEAALS 497
L C+ +++ R E+ + A+ D K+ AE ++QEM E+
Sbjct: 122 L-CKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAP 180
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ + I +CK + DAL++ M+ +P V T+ LV G
Sbjct: 181 CVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQG 226
>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 859
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 93/218 (42%), Gaps = 22/218 (10%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G + DI +M+++ D+ TY L+ + + F+E L M + +N+
Sbjct: 361 GRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDM----VEENVEPN 416
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
M E K + D A+ ++ M E+ + + I F +
Sbjct: 417 METYEGLIFACGKGGLYED----------AKKILLHMNEKGIVPSSKAYTGVIEAFGQAA 466
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR 573
+ +AL ++ M E+ PTVET+ ++ + +Y++ + + R ESG + R
Sbjct: 467 LYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAI---LSRMNESG---LKR 520
Query: 574 DL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKL 609
D+ + ++ F QGG +E ++ M+K N ++L
Sbjct: 521 DVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNEL 558
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 93/233 (39%), Gaps = 24/233 (10%)
Query: 375 HSFGESTLCSDV------IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV 428
+ ES + D+ + +L LE ++L +ME G+ D T+Y LL AY ++
Sbjct: 266 RTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAEL 325
Query: 429 KMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQ 488
+EA + +QM+ + V N + V+ + + + D +
Sbjct: 326 GSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGK--------------HGRYDDVRDIFL 371
Query: 489 EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548
EM+ N I F +G + + ++ M E + P +ET+ L++
Sbjct: 372 EMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGG 431
Query: 549 MYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
+Y D + + E G++ S+ Y ++ F Q +E + V M +
Sbjct: 432 LYEDAKKILLHMN---EKGIVPSSK-AYTGVIEAFGQAALYEEALVVFNTMNE 480
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 113/271 (41%), Gaps = 30/271 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I L + G L+ ++ D+M G Y +++ AY + F + LL M++
Sbjct: 142 MITLLGREGLLDKCREVFDEMPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMKQ-- 199
Query: 446 LVQNLSCEMVVSERFSEVADKSA-SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
+ +S ++ ++ V + A D L+ L EMR E + N+
Sbjct: 200 --ERVSPSILT---YNTVINACARGGLDWEGLL-------GLFAEMRHEGIQPDVITYNT 247
Query: 505 SIYFFCKGKMIGD-ALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ C + +GD A ++R M E I P + T+ YLV L ++ ++ R
Sbjct: 248 -LLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVS----ELLRE 302
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK---SEFLKHHK 620
+ESG Y LL + + G + M+V M+ + Y + + KH +
Sbjct: 303 MESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGR 362
Query: 621 H-----LYRRLKVSNARTEAQSKRLVNVQAF 646
+ ++ +KVSN +A + ++ +Q F
Sbjct: 363 YDDVRDIFLEMKVSNTDPDAGTYNIL-IQVF 392
>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 827
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 128/288 (44%), Gaps = 33/288 (11%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+ + ++G +SE+S + +K+ T + +I A + G + A + M A
Sbjct: 469 LLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTF-NTLISAYSRCGSFQQAMAVYKRMLEA 527
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLS-CEMV------------ 455
G D ++Y ++L A + ++ ++E + +M+ C L+ C ++
Sbjct: 528 GVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERM 587
Query: 456 ---VSERFSEVADKSASFTDTSSLMD-KSDL---AESLIQEMREEAA--LSTIYKLNSSI 506
E +S + + T L++ K DL E +E++++ + LST LN+ I
Sbjct: 588 HTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKGSPDLST---LNAMI 644
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMY-RDITILWGDIKRNIE 565
+ + +M+ A +I M E P++ T+ L+Y HS E + R +L + + ++
Sbjct: 645 AIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLK 704
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+++ Y T++ + + G + + YMK + D + Y +
Sbjct: 705 PDLIS-----YNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNT 747
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 114/269 (42%), Gaps = 33/269 (12%)
Query: 359 KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL----GFLEAAHDILDDMELAGHPMD 414
K +++ + S +E F ES L V+ +I + G + AA IL+++ G +D
Sbjct: 158 KKCDMAMSVFSWVREREDF-ESVLNCSVVAVIITMLGKEGKVSAASSILNNLRKDGFDLD 216
Query: 415 STTYKSLLTAYYKVKMFREAEALLKQM-RKSC--------LVQNLSCEM----------V 455
Y SL+TAY +R+A + K+M + C ++ N+ +M V
Sbjct: 217 VYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLV 276
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
+ S VA ++ S + L A + +EM+ N+ + + K
Sbjct: 277 HGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKS 336
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAV 571
+ +A+++ + M+ P++ T+ L+ ++ + R+ L +++ I+ V
Sbjct: 337 RRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFT- 395
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMK 600
Y TLL F + G E M + G M+
Sbjct: 396 ----YTTLLSGFEKAGMDEPAMRIFGEMR 420
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 99/244 (40%), Gaps = 23/244 (9%)
Query: 373 EHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMF 431
E F S + + +I A + G L A ++ D M G D TY +LL+ + K M
Sbjct: 350 EFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMD 409
Query: 432 REAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491
A + +MR + N+ F+ + + + +M + +E+
Sbjct: 410 EPAMRIFGEMRAAGCKPNICT-------FNALIKMHGNRGRFAEMM-------KVFEEIE 455
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYR 551
I N+ + F + M + +++ M+ P +TF L+ +S ++
Sbjct: 456 ICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQ 515
Query: 552 DITILWGDIKRNIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKL 609
++ KR +E+G V+ DL Y +L +GG +E+ +V MK ++L
Sbjct: 516 QAMAVY---KRMLEAG---VTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNEL 569
Query: 610 MYKS 613
Y S
Sbjct: 570 TYCS 573
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 479 KSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFY 538
K A S++ +R++ +Y S I + DA+ ++++M+E +PT+ T+
Sbjct: 197 KVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYN 256
Query: 539 YLVYGHSSLEMYRDITILWGDIK---RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEV 595
+ L +Y + + W I ++S +A Y TL+ +G +E +V
Sbjct: 257 VI------LNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQV 310
Query: 596 IGYMKKQNMYVDKLMYKS 613
MK DK+ + +
Sbjct: 311 FEEMKLSGFSPDKVTFNT 328
>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
Length = 1095
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 101/234 (43%), Gaps = 26/234 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ ++ G ++A ILDDME G D TY ++ K+K A LLK+MR+
Sbjct: 268 NTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMRE 327
Query: 444 SCLVQN-LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
L + S ++ F E K +LA + +M ++ ++
Sbjct: 328 VNLTPDECSYNTLIHGFFGE---------------GKINLAIYIFNQMLRQSLKPSVATY 372
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEMYRDITILWGD 559
+ I +C+ +A ++ MQ +RP+ T+ L+ G HS L D+
Sbjct: 373 TALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLI----- 427
Query: 560 IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + S ++++R +Y L+ F Q G + +++ M + D + Y +
Sbjct: 428 --KYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSA 479
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 111/274 (40%), Gaps = 19/274 (6%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ L+NGY KH K L+ ++ S T+ + +ID QLG + A IL M
Sbjct: 408 SALLNGYCKHSKLGPALDLIKYLRSRSISINR-TMYTILIDGFCQLGEVSKAKQILKCML 466
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY +L+ K+ M E + +L +M+KS ++ N + F +
Sbjct: 467 ADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAK 526
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ + +A S+I N+ + F + MI +A + + M
Sbjct: 527 EALKYFVDIYRSGLVANSVIH--------------NALLCSFYREGMIAEAEQFKQYMSR 572
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
MKI V +F ++ + + ++ ++ R+ + Y +LL QGG
Sbjct: 573 MKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICT----YGSLLRGLCQGG 628
Query: 588 YFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKH 621
+ + E + Y+ ++ +D+ + + KH
Sbjct: 629 HLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKH 662
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 94/201 (46%), Gaps = 5/201 (2%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
A ++NGY K G+ +E+ L+ ++ E+ + S + ++ I+ G L + D
Sbjct: 757 AYNSMMNGYLKGGQINEIERLMRNMH-ENEVYPSSASYNILMHGYIKKGQLSRTLYLYRD 815
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVSERFSEVA 464
M G D+ TY+ L+ + + A L++M + NL+ ++++ + FSE +
Sbjct: 816 MVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILI-KAFSEKS 874
Query: 465 DKSASFTDTSSL--MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
S + S + + D A L ++M+ + + +S + CK + +A+ ++
Sbjct: 875 KMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVF 934
Query: 523 RRMQEMKIRPTVETFYYLVYG 543
+ + PT+ TF L++G
Sbjct: 935 SSIMRAGMVPTIATFTTLMHG 955
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 91/231 (39%), Gaps = 20/231 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I L G LE A + D M+ +G + TTY L+ + K A +M
Sbjct: 353 NTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRM-- 410
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ +V +V K++ F D A SL+++M E N
Sbjct: 411 --ISHGCRPNVVTYTCMVDVLCKNSMF----------DQANSLVEKMTLEGCTPNTITFN 458
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-R 562
+ I C + A+K+ RMQ P + T+ L+ + Y + L+ +I+ R
Sbjct: 459 TFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEAR 518
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
N++ ++ Y T+L F + G +++ G + D + Y +
Sbjct: 519 NLQPNLVT-----YNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNT 564
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 84/227 (37%), Gaps = 25/227 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++ AL + ++AAH + +M G P D+ TY +++++ K +A L + + S
Sbjct: 185 LLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSV 244
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
V N + + E EVA K L+ EM + + +
Sbjct: 245 PVYNALIDGMCKEGRIEVAIK-------------------LLGEMMDNGVDPNVVSYSCI 285
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG-DIKRNI 564
I C + A ++ +M + TF L+ G + LW I+
Sbjct: 286 INSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGC 345
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
E V+A Y TL+ G E ++V M++ + Y
Sbjct: 346 EPNVVA-----YNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTY 387
>gi|414591144|tpg|DAA41715.1| TPA: hypothetical protein ZEAMMB73_506058 [Zea mays]
Length = 521
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 100/230 (43%), Gaps = 18/230 (7%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S V+D L + G ++ A +LDDM G +++ Y SLL Y + K + +L+ M
Sbjct: 135 SVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIM-- 192
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+N E V ++ + D ++ D S + E+L EM+ + +Y
Sbjct: 193 ----ENEGIEATVGT-YTILVDSLSTARDISKV-------EALFNEMKANNVVGDVYLYT 240
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ I +C+ + A K+ + P T+ L+ G + +L D++
Sbjct: 241 AVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQ-- 298
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
GV +++ ++ T++ + + G + +++ M+K + ++ Y +
Sbjct: 299 -GQGV-GLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKIGVELNIYTYNT 346
>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 94/217 (43%), Gaps = 27/217 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L++G K +N ++ ++ + K + + V++ L ++G L A D+++DM++
Sbjct: 126 LLSGLVKESENGDMEFVYREMIKRKIELNVISF-NIVVNGLCKVGKLNRAGDVIEDMKVW 184
Query: 410 GHPMDSTTYKSLLTAYYKV----KMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD 465
G + TY +L+ Y K+ KM++ A+A+LK+M + N ++ + F + +
Sbjct: 185 GVSPNVITYNTLIDGYCKMGRIGKMYK-ADAILKEMVAKGICPNEVTYNILIDGFCKDEN 243
Query: 466 KSASFTDTSSLM---------------------DKSDLAESLIQEMREEAALSTIYKLNS 504
S + + K D A +L +M + N
Sbjct: 244 VSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNV 303
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
I FCK K + +A+ ++ M++ + P T+ L+
Sbjct: 304 LINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLI 340
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 114/279 (40%), Gaps = 29/279 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI GY K G N + LL I K + ++ +++I + G LE A + M
Sbjct: 453 LIYGYCKQG-NLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + TY +++ Y+ + +A AL +M +S NL + S
Sbjct: 512 GISPNHVTYTAIIDGYFNLAKVDDALALFWKMVES---GNLPSSQTYNVMIS-------G 561
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
F+ T+S+ + AE+ +M ++ L + S I C+ G A KI+ M++
Sbjct: 562 FSKTNSISE----AENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRN 617
Query: 530 IRPTVETFYYLVYG------HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNF 583
P + T+ L+YG EMY + L E V D Y TL+
Sbjct: 618 YFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARL---THYGCEPNV-----DTYTTLVKGL 669
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHL 622
G +++ M+K+ + + +Y++ + K+L
Sbjct: 670 CGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNL 708
Score = 42.4 bits (98), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 94/251 (37%), Gaps = 25/251 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +I+ L G LE A D+L++M G TY L + EA LL +M+K
Sbjct: 276 STLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKK 335
Query: 444 SCLVQNLSC--------------EMVVSERFSEVADKSASFTDTSSLM-------DKSDL 482
V N+ E+ + +AD T T + + + +
Sbjct: 336 RGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFET 395
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A ++ + M +L + N I FC I A+ I+ +M + P V T+ L+Y
Sbjct: 396 AFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIY 455
Query: 543 GHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602
G+ + L +K N L Y L+ F +GG E + M +
Sbjct: 456 GYCKQGNLNNAMRLLEIMKGN----GLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511
Query: 603 NMYVDKLMYKS 613
+ + + Y +
Sbjct: 512 GISPNHVTYTA 522
>gi|410110107|gb|AFV61133.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
brasiliensis]
Length = 382
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 110/237 (46%), Gaps = 20/237 (8%)
Query: 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
G+ L S++I+ +L A I ++ +G D Y +++ + K K+FREA +L
Sbjct: 3 GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSL 62
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
+ +M+ + ++ N + + + E + F + A S+ EMRE L
Sbjct: 63 ISEMKTAGVMPNTTSYSTLLTMYVE----NKKFLE----------ALSVFSEMREIKCLL 108
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ N I + + M +A K++ M++M I P V ++ L+ + E++ + L+
Sbjct: 109 DLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 168
Query: 558 GDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++R NIE V+ Y ++++ + + E+ +I M+ + + + + Y +
Sbjct: 169 RLMQRKNIEQNVVT-----YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYST 220
>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 589
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 111/291 (38%), Gaps = 26/291 (8%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ING K G S L IK + S ++D+L + G + A ++ M
Sbjct: 180 GAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMT 239
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D Y SL+ ++EA LL M + ++ N+ V+ + F + S
Sbjct: 240 SKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMIS 299
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
A++++ M + NS I C +GDA+K++ M
Sbjct: 300 R--------------AKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIH 345
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
P + T+ L++G + L G++ + SG L + TL+ F + G
Sbjct: 346 KGFLPNLVTYSSLIHGWCKTKNINKALFLLGEM---VNSG-LNPDVVTWSTLIGGFCKAG 401
Query: 588 YFERVMEVIGYMKKQNMYVD--------KLMYKSEFLKHHKHLYRRLKVSN 630
E E+ M + + + + ++K +F L+R ++ N
Sbjct: 402 KPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMN 452
>gi|255570179|ref|XP_002526050.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534631|gb|EEF36327.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 284
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 18/225 (8%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ +I ++ G + + I + G DS TY +++ + ++ M A+ L +MR
Sbjct: 14 CNVLIGEYLKAGLINESMRIWKRVNELGFVPDSITYGAMIRGFCRMGMLNVAKGLFTRMR 73
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
+ +S + AS SSL + A L QE+R ++
Sbjct: 74 A----------LGLSPALCDYNMLMASLCKESSL----EQARKLFQELRNSNCELDVFSF 119
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
N IY K I A ++ + M +M + P T++ L+ S L + + + R
Sbjct: 120 NIMIYGTLKAGDIQSAKELLKDMLQMGVNPNAFTYFILINWFSKLGLLDEAKEAF---NR 176
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
I SG + S +Y++LL F G E + ++ M + + +D
Sbjct: 177 MIGSGFIP-SIHVYDSLLKGFSSMGKAEETINLLQLMADKGVVLD 220
>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 109/273 (39%), Gaps = 37/273 (13%)
Query: 350 LINGYKKHGKNSELS--WLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
LI G ++GK E + W L+ K + T I L G++ A ++ ++E
Sbjct: 365 LIKGLLENGKIDEATMIWRLMPAKGYA---ADKTTYGIFIHGLCVNGYVNKALGVMQEVE 421
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS-CEMVVSERFSEVADK 466
+G +D Y S++ K K EA L+K+M K + N C ++ +
Sbjct: 422 SSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLG 481
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
ASF ++EM + T+ N I CK G+A + M
Sbjct: 482 EASF---------------FLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEML 526
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITI-----LWGD-IKRNIESGVLAVSRDLYETLL 580
E +P ++T+ L+ G + RD I LW ++ +E+ V+ ++ L+
Sbjct: 527 ENGWKPDLKTYSILLCG-----LCRDRKIDLALELWHQFLQSGLETDVM-----MHNILI 576
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G + M V+ M+ +N + + Y +
Sbjct: 577 HGLCSVGKLDDAMTVMANMEHRNCTANLVTYNT 609
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 105/252 (41%), Gaps = 27/252 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-- 441
S VI+ L + G L+ A ++ D+M G D T Y L+ + K K + A L ++
Sbjct: 188 STVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLE 247
Query: 442 ---------RKSCLVQNLS-CEMV-----VSERFSEVADKSASFTDTS---SLMDKS--D 481
+ ++ LS C V + ER + + +T +S L D D
Sbjct: 248 DSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVD 307
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
AES+ E+ E A + N+ + FC+ I ++L+++R M E K + ++ L+
Sbjct: 308 KAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIM-EHKNSVNIVSYNILI 366
Query: 542 YGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
G + T++W R + + A + Y + GY + + V+ ++
Sbjct: 367 KGLLENGKIDEATMIW----RLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVES 422
Query: 602 QNMYVDKLMYKS 613
++D Y S
Sbjct: 423 SGGHLDVYAYAS 434
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 114/279 (40%), Gaps = 29/279 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI GY K G N + LL I K + ++ +++I + G LE A + M
Sbjct: 453 LIYGYCKQG-NLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + TY +++ Y+ + +A AL +M +S NL + S
Sbjct: 512 GISPNHVTYTAIIDGYFNLAKVDDALALFWKMVES---GNLPSSQTYNVMIS-------G 561
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
F+ T+S+ + AE+ +M ++ L + S I C+ G A KI+ M++
Sbjct: 562 FSKTNSISE----AENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRN 617
Query: 530 IRPTVETFYYLVYG------HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNF 583
P + T+ L+YG EMY + L E V D Y TL+
Sbjct: 618 YFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARL---THYGCEPNV-----DTYTTLVKGL 669
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHL 622
G +++ M+K+ + + +Y++ + K+L
Sbjct: 670 CGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNL 708
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 94/251 (37%), Gaps = 25/251 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +I+ L G LE A D+L++M G TY L + EA LL +M+K
Sbjct: 276 STLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKK 335
Query: 444 SCLVQNLSC--------------EMVVSERFSEVADKSASFTDTSSLM-------DKSDL 482
V N+ E+ + +AD T T + + + +
Sbjct: 336 RGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFET 395
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A ++ + M +L + N I FC I A+ I+ +M + P V T+ L+Y
Sbjct: 396 AFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIY 455
Query: 543 GHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602
G+ + L +K N L Y L+ F +GG E + M +
Sbjct: 456 GYCKQGNLNNAMRLLEIMKGN----GLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511
Query: 603 NMYVDKLMYKS 613
+ + + Y +
Sbjct: 512 GISPNHVTYTA 522
>gi|357486821|ref|XP_003613698.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515033|gb|AES96656.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 749
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ V++ ++G LE A + ++ G ++ +Y SL+ A++K + +REA A +M
Sbjct: 227 CNVVLNGFCKMGRLEEALSFVWMIKNDGFSLNRNSYSSLINAFFKARRYREAHAWYTKMF 286
Query: 443 K----------SCLVQNLSCEMVVS------ERFSEVADKSASFTDTSSLMDKSDLA-ES 485
K + +++ LS E V E +++ ++ + + D+ +
Sbjct: 287 KQGIVPDVVLYAIMIRGLSKEGRVGEAAKMLEEMTQIGLTPDAYCYNAVIQGLCDVGLLN 346
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
Q +R E + + I CK M+ +A +++ +M+++ P+V TF L+ G
Sbjct: 347 RAQSLRLEISEHNVCTHTILICEMCKRGMVAEAQELFNQMEKLGCEPSVVTFNTLING 404
>gi|359493285|ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Vitis vinifera]
Length = 993
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 28/187 (14%)
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
+C+ +I AL+ +G LE A+ M DS TY +++ Y +V EA + +
Sbjct: 364 VMCNTIIKALLMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVSRIEEALEIFDE 423
Query: 441 MRKS---------CLVQNLSCEMVVS---ERFSEVADKSASFTDTSSLMDKSDLAESLIQ 488
RK+ C++ L + +V E F E+ +K + + L ++ +
Sbjct: 424 FRKTSISSVSCYKCMIYGLCRKGMVDMAIEVFIELNEKGLELVSGTY----TSLIKASFE 479
Query: 489 EMREEAALSTIYKL------------NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
E E L ++++ NS+I F CK A ++Y RM+ + T +
Sbjct: 480 EQGAEGVLKFVHRIENLGREAFDTISNSAICFLCKRGFSLAACEVYMRMRRKQSVVTSRS 539
Query: 537 FYYLVYG 543
+Y ++ G
Sbjct: 540 YYSILKG 546
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 102/267 (38%), Gaps = 36/267 (13%)
Query: 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD------VIDALIQLGFLEAAHDILD 404
I GY + G +L+ ++H E + D +ID + G++E A L+
Sbjct: 165 ICGYFREG-------VLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLE 217
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
M+ G + TY +++ + K EA L K +V+NL E+ + F V
Sbjct: 218 KMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFK------MVENLGIEV---DEFMYV- 267
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
+ D D L+++M + +I NS I CK +A ++ +
Sbjct: 268 ----TLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADEVSK- 322
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
I TF L++G+ E + I + KR +E + + + T++ L
Sbjct: 323 ----GIAGDAVTFSTLLHGYIEEENVKGIL----ETKRRLEEDGVCIDLVMCNTIIKALL 374
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMY 611
G E M ++ D + Y
Sbjct: 375 MVGALEDAYAFYKGMSGMDLVADSVTY 401
>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
Length = 1274
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 99/484 (20%), Positives = 186/484 (38%), Gaps = 62/484 (12%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
I PD FN++++ GS K ++M+ M ++G A +I+ + C++ K
Sbjct: 189 ICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGY---APTIVTYNTVLHWYCKKGRFK 245
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNP----KL 288
+D + + Y L+ + + I A G L+L R R PN L
Sbjct: 246 AAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRI-AKGYLLLRDMRKRMIHPNEVTYNTL 304
Query: 289 RQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILK---MEG--KQELVLF---RNGKL 340
+ I S L L + P + ++++ EG K+ L +F L
Sbjct: 305 INGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGL 364
Query: 341 LHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAH 400
S + L++G K+ + + +K+ G T + +ID L + GFL+ A
Sbjct: 365 TPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITY-TGMIDGLCKNGFLDEAV 423
Query: 401 DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERF 460
+L++M G D TY +L+ + KV F+ A+ ++ ++ + L N ++ S
Sbjct: 424 VLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPN---GIIYSTLI 480
Query: 461 SEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALK 520
L + + E++I E + N + CK + +A +
Sbjct: 481 YNCCRMGC-------LKEAIRIYEAMILEGHTRDH----FTFNVLVTSLCKAGKVAEAEE 529
Query: 521 IYRRMQEMKIRPTVETFYYLV--YGHS-----SLEMYRDIT--------ILWGDIKRNIE 565
R M I P +F L+ YG+S + ++ ++T +G + + +
Sbjct: 530 FMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLC 589
Query: 566 SG----------------VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKL 609
G AV +Y TLL + G + + + G M ++++ D
Sbjct: 590 KGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSY 649
Query: 610 MYKS 613
Y S
Sbjct: 650 TYTS 653
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 91/231 (39%), Gaps = 20/231 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I L G LE A + D M+ +G + TTY L+ + K A +M
Sbjct: 353 NTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRM-- 410
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ +V +V K++ F D A SL+++M E N
Sbjct: 411 --ISHGCRPNVVTYTCMVDVLCKNSMF----------DQANSLVEKMTLEGCTPNTMTFN 458
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-R 562
+ I C + A+K+ RMQ P + T+ L+ + Y + L+ +I+ R
Sbjct: 459 TFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEAR 518
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
N++ ++ Y T+L F + G +++ G + D + Y +
Sbjct: 519 NLQPNLVT-----YNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNT 564
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 84/227 (37%), Gaps = 25/227 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++ AL + ++AAH + +M G P D+ TY +++++ K +A L + + S
Sbjct: 185 LLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSV 244
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
V N + + E EVA K L+ EM + + +
Sbjct: 245 PVYNALIDGMCKEGRIEVAIK-------------------LLGEMMDNGVDPNVVSYSCI 285
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG-DIKRNI 564
I C + A ++ +M + TF L+ G + LW I+
Sbjct: 286 INSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGC 345
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
E V+A Y TL+ G E ++V M++ + Y
Sbjct: 346 EPNVVA-----YNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTY 387
>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
Length = 617
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 113/276 (40%), Gaps = 22/276 (7%)
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
L + A+ LI+ G+ +E L L + + ++ +++ L+ A
Sbjct: 259 LTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNA 318
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
+LD+M G D TY L+ AY + + A LLK+M + + S
Sbjct: 319 EQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPS-------SYV 371
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
FS + A F D A ++++EM+ + N I F K +G A+
Sbjct: 372 FSRIL---AGFRDRGDWQK----AFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAM 424
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYET 578
+ +M+E I P V T+ L+ H + L+ +++ N G +
Sbjct: 425 DAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYN------ 478
Query: 579 LLLNFL-QGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+++N L + ++E V ++ MK+Q + + + Y +
Sbjct: 479 IMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTT 514
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 28/201 (13%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM---- 441
+ID L G L A D+L +ME++G P + TY +++ K + EAE + QM
Sbjct: 447 LIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTG 506
Query: 442 --RKSCLVQNLSCEMVVSERFSEVAD----------KSASFTDTSSLM-----DKSDLAE 484
R + L + +ER + A+ + + T S L A
Sbjct: 507 IGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAA 566
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR--RMQEMK-----IRPTVETF 537
++Q M + + I CK + ALK+ R RM+ MK P +++
Sbjct: 567 DILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSL 626
Query: 538 YYLVYGHSSLEMYRDITILWG 558
+ G +L ++R++T + G
Sbjct: 627 FRGNNGRDALSLFREMTEVGG 647
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 110/284 (38%), Gaps = 24/284 (8%)
Query: 333 VLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ 392
L R+ L S ++I G + L+ +++E H G L I + +
Sbjct: 79 ALARDDGLTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLG-LVQSFIGSYAR 137
Query: 393 LGFLEAAHDILDD-MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
L + A D++ + +++ G ++ Y LLT + + E+ +M Q +
Sbjct: 138 LQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSS----QGIE 193
Query: 452 CEMVVSERFSEVADK--SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFF 509
++V F+ V D A T+ LM ++EM + + F
Sbjct: 194 PDVVT---FNTVIDALCRARQARTAVLM---------LEEMSSCDVAPDETTFTTLMEGF 241
Query: 510 CKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVL 569
+ I AL++ RM EM PT T L+ G+ L D G I++ I G
Sbjct: 242 VEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDA---LGYIQQEIADG-F 297
Query: 570 AVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
R + T + Q G+ + ++V+G M ++ D Y +
Sbjct: 298 EPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYST 341
>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 17/195 (8%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGES-TLCSDVIDALIQLGFLEAAHDILDDM 406
LING K G+ ++ LL K E HS + + +I L + L A D+ +M
Sbjct: 170 GTLINGLCKAGETKAVARLLR--KLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEM 227
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ G + TY +L+ + + +EA +LL +M+ ++N++ ++ F+ + D
Sbjct: 228 IVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMK----LKNINPDVYT---FNILIDA 280
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
A K D A SL +EM+ + I S I CK + A+ + ++M+
Sbjct: 281 LAK-------EGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMK 333
Query: 527 EMKIRPTVETFYYLV 541
E I+P V ++ L+
Sbjct: 334 EQGIQPNVYSYTILL 348
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNI 564
I+ CK K++GDA +Y M I P V T+ L++G + ++ L ++K +NI
Sbjct: 208 IHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNI 267
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS--EFLKHHKHL 622
V + L+ + G + M + MK +NM+ + + Y S + L + HL
Sbjct: 268 NPDVYT-----FNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHL 322
Query: 623 YRRLKVSNARTE 634
R + + E
Sbjct: 323 ERAIALCKKMKE 334
>gi|410110117|gb|AFV61138.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
hermannioides]
Length = 382
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 110/237 (46%), Gaps = 20/237 (8%)
Query: 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
G+ L S++I+ +L A I ++ +G D Y +++ + K K+FREA +L
Sbjct: 3 GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSL 62
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
+ +M+ + ++ N + + + E + F + A S+ EMRE L
Sbjct: 63 ISEMKTAGVMPNTTSYSTLLTMYVE----NKKFLE----------ALSVFSEMREIKCLL 108
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ N I + + M +A K++ M++M I P V ++ L+ + E++ + L+
Sbjct: 109 DLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 168
Query: 558 GDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++R NIE V+ Y ++++ + + E+ +I M+ + + + + Y +
Sbjct: 169 RLMQRKNIEQNVVT-----YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYST 220
>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 85/195 (43%), Gaps = 17/195 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMEL 408
LI GY K G + L++ + H S + + +I ++ + G + A + LD M +
Sbjct: 316 LIKGYCKEGNFHQ--ALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRV 373
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G + TY +L+ + + EA +LK+M + FS
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEM--------------IDNGFSPSVVTYN 419
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ + + K A +++++M+E+ + ++ + FC+ + +AL++ R+M
Sbjct: 420 ALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAK 479
Query: 529 KIRPTVETFYYLVYG 543
I+P T+ L+ G
Sbjct: 480 GIKPDTITYSSLIQG 494
>gi|255661116|gb|ACU25727.1| pentatricopeptide repeat-containing protein [Citharexylum
montevidense]
Length = 307
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 81/179 (45%), Gaps = 18/179 (10%)
Query: 378 GESTLCSDVIDALIQL----GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE 433
GE + D+++ + + G L A + + G S +Y S+++++ K F+E
Sbjct: 136 GEDSFDIDMVNTYLSIFLAKGKLSLACKLFEIFTKMGVDPVSYSYNSIMSSFVKKGYFKE 195
Query: 434 AEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE 493
A +L M ++ +++ V+ + + M ++DLA +++ ++ +E
Sbjct: 196 AWGVLNAMGETVYPADIATYNVIIQGLGK--------------MGRADLANAVLDKLMKE 241
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
I N+ I K I +A K++++M+E I P V T+ L+ HS +D
Sbjct: 242 GGYLDIVMYNTLINVLGKAGRIDEANKLFQQMKESGINPDVVTYNTLIEVHSKAGRLKD 300
>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 465
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 93/233 (39%), Gaps = 26/233 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID + + + A D+ +M G + TY +L++ ++ V ++A L +M
Sbjct: 231 STIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKM-- 288
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ +N+ ++ +V KS K A L+ EM + I +
Sbjct: 289 --ISENIKPDVYTFNILVDVFCKSG----------KISYALKLVDEMHDRGQPPNIVTYS 336
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
S + CK + A+ + ++++ IRP + T+ L+ G + D RN
Sbjct: 337 SILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLED--------ARN 388
Query: 564 IESGVLAVSRDL----YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
I +L D+ Y + F + G F+ ++ M++ D Y+
Sbjct: 389 IFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASALLSKMEENGCIPDAKTYE 441
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS- 444
+ID L G LE A +I +D+ + G+ + TY + + K +F EA ALL +M ++
Sbjct: 373 LIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASALLSKMEENG 432
Query: 445 CLVQNLSCEMV 455
C+ + E++
Sbjct: 433 CIPDAKTYELI 443
>gi|449468277|ref|XP_004151848.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g14770, mitochondrial-like, partial [Cucumis
sativus]
Length = 697
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 18/198 (9%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ +I+ L + G +E A DIL +M L G STTY+ LL K R A+ +L+
Sbjct: 376 CNIMINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISSKS---RRADTILQ--- 429
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
+ E++V+ + D + + A +++++M E ++
Sbjct: 430 --------THELLVNMQLKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIADTTTY 481
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
N+ I+ +C + A Y M ++ P +ET+ L+ G S + + L +IK+
Sbjct: 482 NALIHGYCISSHLKRAFMTYSTMLSERVSPDIETYNLLLGGLSKAGLIHEADDLLSEIKK 541
Query: 563 NIESGVLAVSRDLYETLL 580
L + YETL+
Sbjct: 542 R----GLVPNACTYETLM 555
>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 24/167 (14%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++D+ + G ++ D+L +M+ G + TY L+ K F +A+ L+ +M K+
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 299
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTS---SLMDKSDLAE--SLIQEMREEAALSTIY 500
L K +++T +K LAE SL +EM + A T+
Sbjct: 300 L-------------------KVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVA 340
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL 547
NS IY CK + DA++ M + P V ++ L+YG+ L
Sbjct: 341 TYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRL 387
Score = 42.7 bits (99), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 21/185 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
V+D L +LG LE A ++L M G D TY S++ A+ + R+ + +M
Sbjct: 520 VVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKG 579
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLI--QEMREEAALSTIYKLN 503
L ++ V+ + K L + I EM+E+ L + N
Sbjct: 580 LTPSVVTYTVLIHGHA----------------GKGRLERAFIYFSEMQEKGILPNVITYN 623
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
S I CK + + A + M E I P ++ L+ + ++ +++ L+ K+
Sbjct: 624 SLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLY---KQM 680
Query: 564 IESGV 568
++ GV
Sbjct: 681 LDRGV 685
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 100/233 (42%), Gaps = 23/233 (9%)
Query: 384 SDVIDALIQLGFL-EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
+ +++ ++ G L EA + D M G+ D T+ +L+ K +F A L+ M
Sbjct: 350 NTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMD 409
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES--LIQEMREEAALSTIY 500
NL+ ++ + F + K L E+ +++EM +
Sbjct: 410 AKGCKPNLNTYTILIDGFCK----------------KGQLEEAGLILREMLTKGFSLNTV 453
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
N+ I CK I +AL ++ M +P + TF L++G ++ D L+ D+
Sbjct: 454 GYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDM 513
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ GV+A S + TL+ FL+ G + ++++ M + +D++ Y
Sbjct: 514 ---VLEGVIANSVT-FNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNG 562
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 82/195 (42%), Gaps = 18/195 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+NG+ ++G+ +E + + + + S +++ L + G +A ++++DM+
Sbjct: 352 LVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAK 411
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + TY L+ + K EA +L++M L + S V
Sbjct: 412 GCKPNLNTYTILIDGFCKKGQLEEAGLILREM----LTKGFSLNTVGYNAL--------- 458
Query: 470 FTDTSSLMDKSDLAESL--IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
S+L + E+L EM + I+ NS I+ C+ + DAL +YR M
Sbjct: 459 ---ISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVL 515
Query: 528 MKIRPTVETFYYLVY 542
+ TF L++
Sbjct: 516 EGVIANSVTFNTLIH 530
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 22/202 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-R 442
+ +I A ++ G ++ A +++DM G P+D TY L+ A K + L ++M R
Sbjct: 526 NTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIR 585
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
K ++C ++++ F + + A +++M I
Sbjct: 586 KGLTPSIITCNILIN-----------GFCTAGKVHN----ALEFMRDMIHRGFSPDIVTY 630
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
NS I CK I +AL ++ ++Q I+P T+ L+ + D L + R
Sbjct: 631 NSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFL---LYR 687
Query: 563 NIESGVLAVSRDL-YETLLLNF 583
+E+G V D+ + L+ NF
Sbjct: 688 GVENGF--VPNDVTWNILVYNF 707
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 14/190 (7%)
Query: 354 YKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413
Y + G + + LLL +K + + V+D L+ A ++ DM G
Sbjct: 149 YGRAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSP 208
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
+ T+ ++ A V A LL+ M K V N M+ + D
Sbjct: 209 NDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPN---SMIYQ-----------TLIDA 254
Query: 474 SSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT 533
S D+ D A L++EM + N+ IY FC+ + + K+ RM P
Sbjct: 255 LSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPN 314
Query: 534 VETFYYLVYG 543
T+ YL++G
Sbjct: 315 DMTYGYLMHG 324
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/265 (19%), Positives = 113/265 (42%), Gaps = 25/265 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMEL 408
LI GY K G + L++ + H S + + +I ++ + G + A + LD M +
Sbjct: 316 LIKGYCKEGNFHQ--ALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G + TY +L+ + + EA +L++M + FS
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDN--------------GFSPSVVTYN 419
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ + + K + A +++++M+E+ + ++ + FC+ + +AL++ R M E
Sbjct: 420 ALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEK 479
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD--LYETLLLNFLQG 586
I+P T+ L+ G ++ L+ ++ R + + D Y L+ +
Sbjct: 480 GIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLR------VGLPPDEFTYTALINAYCME 533
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMY 611
G E+ +++ M ++ + D + Y
Sbjct: 534 GDLEKALQLHNEMVEKGVLPDVVTY 558
>gi|410110143|gb|AFV61151.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
velutina]
Length = 382
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 110/237 (46%), Gaps = 20/237 (8%)
Query: 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
G+ L S++I+ +L A I ++ +G D Y +++ + K K+FREA +L
Sbjct: 3 GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSL 62
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
+ +M+ + ++ N + + + E + F + A S+ EMRE L
Sbjct: 63 ISEMKTAGVMPNTTSYSTLLTMYVE----NKKFLE----------ALSVFSEMREIKCLL 108
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ N I + + M +A K++ M++M I P V ++ L+ + E++ + L+
Sbjct: 109 DLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 168
Query: 558 GDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++R NIE V+ Y ++++ + + E+ +I M+ + + + + Y +
Sbjct: 169 RLMQRKNIEQNVVT-----YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYST 220
>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Vitis
vinifera]
Length = 829
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
++ +L + G ++ A +L +ME+ G D TY L+ K EA L ++M K
Sbjct: 416 LLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKR 475
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
+ C ++S F + A A S + KSD+AE +I +Y N
Sbjct: 476 IYPNSFVCSAIISGLFEKGAISEAQMYFDS--VTKSDVAEEII-----------LY--NI 520
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
I + K IG+A++ Y+++ E I PT+ TF L+YG
Sbjct: 521 MIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYG 559
>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 86/404 (21%), Positives = 158/404 (39%), Gaps = 49/404 (12%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD--AHSIIILAQIHEMNCQRDE 230
+ P + +N ++H + G ++ LM++ GVV D +S+ I + C++
Sbjct: 210 LTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFI-----DTLCKKGR 264
Query: 231 LKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQ 290
+++ + L + Y +L+ + K +D A L LD + LPN
Sbjct: 265 IEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSL-LDRMLTEDCLPN----- 318
Query: 291 DAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELV--LFRNGKLLHSNRAMA 348
+ LI + L +M +++K + L+ + + G +++R +
Sbjct: 319 SSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILD 378
Query: 349 KLIN-GYKK---------HG----KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG 394
++++ GY+ H N + + ++S+ E ++ + VIDA LG
Sbjct: 379 QMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLG 438
Query: 395 FLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEM 454
L A D+L M G TY L+ K E L K+ + L C+
Sbjct: 439 LLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLK-------EELTKKYKNVAL-----CDS 486
Query: 455 VVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKM 514
+ + F++VAD M K + A L ++M E I I CK
Sbjct: 487 IPNVFFADVADVWK--------MMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGR 538
Query: 515 IGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG 558
+G A K++ M E + P+ + L+ L +Y D L G
Sbjct: 539 LGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVG 582
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 72/385 (18%), Positives = 155/385 (40%), Gaps = 31/385 (8%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
P + +++HA G ++ ++ M + G + H+ ++ I+ M C+ +L++
Sbjct: 72 PTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVM--INAM-CKETKLEEG 128
Query: 235 KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQK 294
+ +D++ Y +L+ + K ++AA E ILD+ PN + +
Sbjct: 129 RRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQE-ILDLMHSNSCNPNERTYNELIC 187
Query: 295 PYL----ISIGSPNLRCGLKLQIMPELLEKDSILKMEGK--------QELVLFRNGKLLH 342
+ + L L+ ++ P ++ +S++ + K + L L ++
Sbjct: 188 GFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVP 247
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
+ I+ K G+ E + L S+K++ E + + +ID + G ++ A+ +
Sbjct: 248 DQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANE-VIYTALIDGYCKAGKMDDANSL 306
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462
LD M +S+TY +L+ K + +EA L++ M + + L C +
Sbjct: 307 LDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESM----IQKGLKCTVPTYTILIV 362
Query: 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
K F D A ++ +M +Y + I+ FC I +A +
Sbjct: 363 AMLKEGDF----------DYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMM 412
Query: 523 RRMQEMKIRPTVETFYYLVYGHSSL 547
M E + P T+ ++ + L
Sbjct: 413 SMMFERGVMPDALTYTLVIDAYGGL 437
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 114/279 (40%), Gaps = 45/279 (16%)
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
L+S EH F S + +I L + G + A D+L + G M++ + +LLTA
Sbjct: 257 LVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALG 316
Query: 427 KVKMFREAEALLKQMRKSCLVQNLS---------CEMVVSERFSEVADK-----SASFTD 472
+ + F+ LL +M++ + N+ C+ + EV +K S F
Sbjct: 317 RAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLV 376
Query: 473 TSSLMDKSDLAESLIQEMREEAALSTIYKLNSS-------------IYFFCKGKMIGDAL 519
++ + L + L + R+E L + ++ S I +CK MI A
Sbjct: 377 EPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAAR 436
Query: 520 KIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITILWGDIKRNIESGVLAVS 572
+++ +M + + P V T LV G + ++E + ++ +K N AV+
Sbjct: 437 ELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQ--GKGLKGN------AVT 488
Query: 573 RDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
Y L+ F E+ ME+ M + D ++Y
Sbjct: 489 ---YTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVY 524
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 87/216 (40%), Gaps = 27/216 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K G+ E L+ ++ + + + +ID + +EAA ++ D M
Sbjct: 386 LIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKD 445
Query: 410 GHPMDSTTYKSLLTAYYK-------VKMFRE---------AEALLKQMRKSCLVQNLSCE 453
G P + T +L+ K V+ F E A +R C V N+
Sbjct: 446 GVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKA 505
Query: 454 MVVSERFSEVADKSAS------FTDTSSL--MDKSDLAESLIQEMREEAALSTIYKLNSS 505
M E F E+ + S +T S L K D A ++ +M+E I N
Sbjct: 506 M---ELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVL 562
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
I FC+ + +A ++ + M+ I+P T+ L+
Sbjct: 563 INGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLI 598
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I L Q G L+ A +L M+ AG D ++ L+ + + EA +LK+M +
Sbjct: 527 LISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAG 586
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ + + FS+ D S A L+++M +E + T+ +
Sbjct: 587 IKPDGVTYNTLISHFSKTGDFST--------------AHRLMKKMVKEGLVPTVVTYGAL 632
Query: 506 IYFFCKGKMIGDALKIYRRMQEM-KIRPTVETFYYLV 541
I+ +C + +A+KI+R M K+ P + L+
Sbjct: 633 IHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILI 669
Score = 46.2 bits (108), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 22/198 (11%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDV-IDALIQLGFLEAAHDILDDMEL 408
LI+G + GK S++L +K+ F + +V I+ + L+ A+++L +ME
Sbjct: 527 LISGLSQAGKLDRASFVLSKMKEA--GFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMEN 584
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
AG D TY +L++ + K F A L+K+M K LV VV+
Sbjct: 585 AGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPT-----VVT---------YG 630
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAAL---STIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+ L D A + ++M + + + IY N I C+ + AL + M
Sbjct: 631 ALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIY--NILINSLCRKNQVDLALSLMDDM 688
Query: 526 QEMKIRPTVETFYYLVYG 543
+ ++P TF + G
Sbjct: 689 KVKGVKPNTNTFNAMFKG 706
>gi|410110131|gb|AFV61145.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rehmannii]
Length = 379
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 110/237 (46%), Gaps = 20/237 (8%)
Query: 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
G+ L S++I+ +L A I ++ +G D Y +++ + K K+FREA +L
Sbjct: 3 GDLVLYSNLIELSRKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSL 62
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
+ +M+ + ++ N S + + E + F + A S+ EMRE L
Sbjct: 63 IGEMKTAGVMPNTSSYSTLLTMYVE----NKKFLE----------ALSVFSEMREIKCLL 108
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ N I + + M +A K++ M++M I P V ++ L+ + E++ + L+
Sbjct: 109 DLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 168
Query: 558 GDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++R NIE V+ Y ++++ + + E+ +I M+ + + + + Y +
Sbjct: 169 RLMQRKNIEQNVVT-----YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYST 220
>gi|449523852|ref|XP_004168937.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Cucumis sativus]
Length = 683
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 18/198 (9%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ +I+ L + G +E A DIL +M L G STTY+ LL K R A+ +L+
Sbjct: 362 CNIMINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISSKS---RRADTILQTH- 417
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
E++V+ + D + + A +++++M E ++
Sbjct: 418 ----------ELLVNMQLKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIADTTTY 467
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
N+ I+ +C + A Y M ++ P +ET+ L+ G S + + L +IK+
Sbjct: 468 NALIHGYCISSHLKRAFMTYSTMLSERVSPDIETYNLLLGGLSKAGLIHEADDLLSEIKK 527
Query: 563 NIESGVLAVSRDLYETLL 580
L + YETL+
Sbjct: 528 R----GLVPNACTYETLM 541
>gi|147789026|emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]
Length = 993
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 28/187 (14%)
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
+C+ +I AL+ +G LE A+ M DS TY +++ Y +V EA + +
Sbjct: 364 VMCNTIIKALLMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVXRIEEALEIFDE 423
Query: 441 MRKS---------CLVQNLSCEMVVS---ERFSEVADKSASFTDTSSLMDKSDLAESLIQ 488
RK+ C++ L + +V E F E+ +K + + L ++ +
Sbjct: 424 FRKTSISSVSCYKCMIYGLCRKGMVDMAIEVFIELNEKGLELVSGTY----TSLIKASFE 479
Query: 489 EMREEAALSTIYKL------------NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
E E L ++++ NS+I F CK A ++Y RM+ + T +
Sbjct: 480 EQGAEGVLKFVHRIENLGREAFDTISNSAICFLCKRGFSLAACEVYMRMRRKQSVVTSRS 539
Query: 537 FYYLVYG 543
+Y ++ G
Sbjct: 540 YYSILKG 546
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 102/267 (38%), Gaps = 36/267 (13%)
Query: 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD------VIDALIQLGFLEAAHDILD 404
I GY + G +L+ ++H E + D +ID + G++E A L+
Sbjct: 165 ICGYFREG-------VLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLE 217
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
M+ G + TY +++ + K EA L K +V+NL E+ + F V
Sbjct: 218 KMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFK------MVENLGIEV---DEFMYV- 267
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
+ D D L+++M + +I NS I CK +A ++ +
Sbjct: 268 ----TLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADEVSK- 322
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
I TF L++G+ E + I + KR +E + + + T++ L
Sbjct: 323 ----GIAGDAVTFSTLLHGYIEEENVKGIL----ETKRRLEEDGVCIDLVMCNTIIKALL 374
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMY 611
G E M ++ D + Y
Sbjct: 375 MVGALEDAYAFYKGMSGMDLVADSVTY 401
>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 30/221 (13%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSF-------GESTLCSDVIDALIQLGFLEAAHDI 402
LING ++G+ +E LL I+KE G + S VID L + GF++ +
Sbjct: 148 LINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEF 207
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK----------SCLVQNLSC 452
++M G + TY SL+ V F E L+ +M + + L+ L C
Sbjct: 208 YNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGL-C 266
Query: 453 E--MVVSER--FSEVADKS--ASFTDTSSLMD------KSDLAESLIQEMREEAALSTIY 500
+ M+V R F E+ ++ + ++LM D+A L + E ++
Sbjct: 267 KNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVW 326
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
N I+ +CK + DA++++ M + P + T+ L+
Sbjct: 327 TYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLI 367
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID L + G + A +L++M + G D+ TY LL A +K + EA L QM K
Sbjct: 469 SCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIK 528
Query: 444 SCLVQNLSCEMVV------SERFSEVAD 465
L ++ C ++ SER E +
Sbjct: 529 RGLEPDVMCYTIMIDGYCKSERIDEAIN 556
>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
Length = 1001
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 115/273 (42%), Gaps = 32/273 (11%)
Query: 367 LLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423
LLS+ ++ SFG + + VI++L L ++ A L + GH D+TT+ +L+
Sbjct: 64 LLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIR 123
Query: 424 AYYKVKMFREAEALLKQM----------RKSCLVQNLSCEMVVSER---FSEVADKSAS- 469
EA L +M L+ L + V+E FSE+ K S
Sbjct: 124 GLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISP 183
Query: 470 --FTDTSSLMDKSDLAE-----SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
T S + L E +L+ EM + + ++ LN+ + CK M+ +A +
Sbjct: 184 NIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVV 243
Query: 523 RRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD--IKRNIESGVLAVSRDLYETLL 580
M + P V T+ L+ GH L D+ + D + ++ + V++ Y TL+
Sbjct: 244 DMMIHRGVEPNVVTYNALMDGH-CLRNEVDVAVKVFDTMVHKDCVANVIS-----YNTLI 297
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + ++ M + M +Q + + + Y +
Sbjct: 298 NGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNT 330
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 50/268 (18%), Positives = 101/268 (37%), Gaps = 34/268 (12%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S V+DAL + G + AHD++D M G D TY +L+ + EA + M
Sbjct: 712 STVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVH 771
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
V N+ ++ + ++ + D A L+++M + ++ N
Sbjct: 772 KGCVPNVRSYNILINGYCQI--------------QRMDKAMGLLEQMSLQGLIADTVTYN 817
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFY----YLVYGHSSLEMYRDITILWGD 559
+ I+ C + A+ ++ M P + T+ YL H E + + G
Sbjct: 818 TLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEG- 876
Query: 560 IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY-------- 611
N+++ +L +Y + + G E ++ + + + D Y
Sbjct: 877 --SNLDADIL-----VYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLC 929
Query: 612 KSEFLKHHKHLYRRLKVSNARTEAQSKR 639
K L L+R++ ++ + + S R
Sbjct: 930 KRGLLDEANKLFRKMDENDIWSNSTSSR 957
>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
Length = 795
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 116/294 (39%), Gaps = 21/294 (7%)
Query: 322 SILKMEGKQELVLFRNGKLLHSNR-AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES 380
S+ +EG + ++ F + K + N+ + LI GY K K E +L ++KE +
Sbjct: 113 SLGDIEGAKGVLKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDE 172
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
+ID ++G + A + D+M G M+ SL+ Y K E E LL
Sbjct: 173 YAYGALIDGYCKVGKMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMC 232
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
MRK L + + + + S +F ++ +M + T+
Sbjct: 233 MRKLDLKPDSYSYCTLVDGYCRDGLSSKAF--------------NVCDQMLRKGIEPTVV 278
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
N+ + C+ DAL+++ M + + P + L+ G + + LW DI
Sbjct: 279 TYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDI 338
Query: 561 -KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
R I + A + T++ + G + E M++ D + Y++
Sbjct: 339 LARGINKSIYA-----FNTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYRT 387
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 17/196 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LINGY K+G+ E LL+ ++K + C+ ++D + G A ++ D M
Sbjct: 213 LINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCT-LVDGYCRDGLSSKAFNVCDQMLRK 271
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G TY +LL + +++A L M + + N + + ++ D S +
Sbjct: 272 GIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGDFSRA 331
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK-GKMIGDALKIYRRMQEM 528
T L ++ +IY N+ I CK G+M G A + ++RM+E+
Sbjct: 332 LT--------------LWDDILARGINKSIYAFNTMINGLCKMGEMDG-AKETFKRMEEL 376
Query: 529 KIRPTVETFYYLVYGH 544
+P T+ L G+
Sbjct: 377 GCKPDGITYRTLSDGY 392
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 87/219 (39%), Gaps = 29/219 (13%)
Query: 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
N AMA L K GK ++ L + + T C+ +I G++ A ++
Sbjct: 561 NIAMAGLC----KSGKVNDARRFFLGLSHGSFTPDNFTYCT-LIHGFSAAGYVNEAFNLR 615
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
D+M G + TTY +LL K A L ++ L+ N+ ++ + +
Sbjct: 616 DEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYC-- 673
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
KS S + L K M +E +I +S I FCK + +A+K+
Sbjct: 674 --KSGSPREALDLRGK----------MLKEGISPSIITYSSLINGFCKQSDVEEAMKLLN 721
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
M+ + T+ TF LV G I GD+K+
Sbjct: 722 EMKASNVDQTIATFSKLVEG----------CIQHGDVKK 750
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 79/163 (48%), Gaps = 15/163 (9%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ +++A + G +E A + + +ME G +++ +Y SL+ Y + A+ +LK M
Sbjct: 69 CAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLKFMS 128
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEM-REEAALSTIYK 501
+ +++N ++ + + + K + AE +++EM +E+ + Y
Sbjct: 129 EKGVMRNKVTLTLLIKGYCKQC--------------KVEEAEKVLREMEKEDGVVVDEYA 174
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ I +CK +GDA+++ M ++ ++ + L+ G+
Sbjct: 175 YGALIDGYCKVGKMGDAIRVRDEMLKVGLKMNLFVCNSLINGY 217
>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
Length = 795
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 99/230 (43%), Gaps = 18/230 (7%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I A ++ G LE A ++ +ME G D TY +L++ +V A A +M +
Sbjct: 329 NSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVR 388
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ NL C + V K FT+ ++ D ++R + + N
Sbjct: 389 NGCSPNL-CTYNALIKLHGVRGK---FTEMMAVFD----------DLRSAGYVPDVVTWN 434
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ + F + + + +++ M++ P +T+ L+ +S ++ ++ KR
Sbjct: 435 TLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIY---KRM 491
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
IE+G+ Y +L +GG +E+ ++ M ++ D+L Y S
Sbjct: 492 IEAGIYP-DISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSS 540
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 102/243 (41%), Gaps = 29/243 (11%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLSC 452
G A + D+M+ AG D T+ SLL Y K + EA +LK+M + C ++
Sbjct: 269 GLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTY 328
Query: 453 EMVVSE-----------------RFSEVADKSASFTDTSSLMD---KSDLAESLIQEMRE 492
++S F + ++T S +D K D A + EM
Sbjct: 329 NSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVR 388
Query: 493 EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMY 550
+ N+ I + + ++ ++ P V T+ L V+G + L+
Sbjct: 389 NGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLD-- 446
Query: 551 RDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLM 610
+++ ++ ++K+ +G + RD Y +L+ ++ + G F++ ME+ M + +Y D
Sbjct: 447 SEVSGVFKEMKK---AGYIP-ERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDIST 502
Query: 611 YKS 613
Y +
Sbjct: 503 YNA 505
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 115/289 (39%), Gaps = 38/289 (13%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L++ + ++G +SE+S + +KK + T S +I + + G + A +I M A
Sbjct: 436 LLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS-LISSYSRCGLFDQAMEIYKRMIEA 494
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLS----------------- 451
G D +TY ++L+A + + +AE L +M + C LS
Sbjct: 495 GIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKM 554
Query: 452 ---CEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
E + +ER + ++ ++ E QE+R I LN+ +
Sbjct: 555 KTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSI 614
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR------ 562
+ K KM+ ++ M E I + T+ L++ +S L GD ++
Sbjct: 615 YGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRL----------GDCEKCESILT 664
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
I+S + R Y T++ + + G + + MK + D + Y
Sbjct: 665 EIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTY 713
>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 788
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 120/287 (41%), Gaps = 30/287 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G G+ E++ LL + +E+ + T + +IDAL + G + A +L M
Sbjct: 236 LIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTF-NILIDALCKEGRILEAQGVLAMMSKR 294
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK----------SCLVQNLSCEMVVSER 459
G D TY +L+ Y + EA L +M K + L+ +V E
Sbjct: 295 GEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEA 354
Query: 460 ---FSEVADKS--ASFTDTSSLMD------KSDLAESLIQEMREEAALSTIYKLNSSIYF 508
F E+ +K+ + +SL+D + + L+ EM A + N I
Sbjct: 355 MVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDA 414
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
CK I +AL + M + ++P + T+ ++ G+ + ++ + R ++SG
Sbjct: 415 LCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYC---LRNNVNVAKDIFNRMVKSG- 470
Query: 569 LAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ D+ Y L+ + + + + + M+ +N+ D Y S
Sbjct: 471 --LEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNS 515
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 14/164 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID L G + +LD+M + P D TY L+ A K EA +L M K
Sbjct: 374 NSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMK 433
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ N+ + D L + ++A+ + M + I N
Sbjct: 434 KGVKPNIV--------------TYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYN 479
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL 547
I +CK +M+ +A+ +++ M+ + P + ++ L+ G +L
Sbjct: 480 VLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNL 523
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/266 (19%), Positives = 107/266 (40%), Gaps = 21/266 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
LING K+G+ LL ++K + S +ID L + GF+ A + +
Sbjct: 164 GTLINGLSKNGQIKAALHLLQEMEKSSVQ-PNLVMYSALIDGLCKDGFVSDALGLCSQIG 222
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G +D+ TY SL+ V ++E LL +M + +N+ + + K
Sbjct: 223 ERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVR----ENVDPDDYTFNILIDALCKE 278
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ A+ ++ M + I N+ + +C + + +A +++ RM +
Sbjct: 279 GRILE----------AQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVK 328
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDI-KRNIESGVLAVSRDLYETLLLNFLQG 586
+ P V + L+ G+ +M + +L+ ++ +N+ + + Y +L+
Sbjct: 329 RGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIAS-----YNSLIDGLCNS 383
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYK 612
G V +++ M D + Y
Sbjct: 384 GRISHVKKLLDEMHGSAQPPDVVTYN 409
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 16/192 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LINGY K E + +L + + + + +ID L LG + ++LD+M +
Sbjct: 481 LINGYCKTEMVDE-AIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDS 539
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D TY LL A+ K + F +A +L +Q+ E + + ++ A
Sbjct: 540 GQSPDVITYNILLDAFCKTQPFDKAISLFRQI----------VEGIWPDFYTNHA----- 584
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D +K +AE ++ + + I CK G+A+ + +M++
Sbjct: 585 IVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDND 644
Query: 530 IRPTVETFYYLV 541
P TF ++
Sbjct: 645 RPPDAITFEIII 656
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 14/158 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID+L LE A ++L +MEL G + Y +L+ + K K EAE + +M
Sbjct: 454 LIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEME--- 510
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+Q +S + V + KS D + LMD + +++ +R + + NS
Sbjct: 511 -LQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMD-----QMIMEGLRPDK-----FTYNSL 559
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ FCK I A I + M P + T+ L+ G
Sbjct: 560 LTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISG 597
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 109/282 (38%), Gaps = 31/282 (10%)
Query: 353 GYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHP 412
G+ KH + LL + + +++ + +I L +LG +E A ILD M
Sbjct: 322 GHAKHAMEVVDAMLLGGLDPDIYTY------NSLISGLCKLGEIEEAVKILDQMVSRDCS 375
Query: 413 MDSTTYKSLLTAYYKVKMFREAEALLKQMRKS----------------CLVQNLSCEMVV 456
++ TY +++++ K EA + + + CL N M +
Sbjct: 376 PNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDL 435
Query: 457 SERFSEVADKSASFT-----DTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK 511
E + FT D+ K + A +L++EM + N+ I FCK
Sbjct: 436 FEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCK 495
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV 571
K I +A +I+ M+ + T+ L+ G + D L + I G L
Sbjct: 496 NKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQM---IMEG-LRP 551
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ Y +LL +F + G ++ +++ M D + Y +
Sbjct: 552 DKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYAT 593
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 23/176 (13%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID + +E A +I D+MEL G DS TY +L+ K K +A L+ QM
Sbjct: 489 LIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQM---- 544
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+++ L ++F+ F T + +D ++Q M I +
Sbjct: 545 IMEGLR-----PDKFT-YNSLLTHFCKTGDIKKAAD----IVQTMTSSGCNPDIVTYATL 594
Query: 506 IYFFCKGKMIGDALKIYRRMQEMK--------IRPTVETFYYLVYGHSSLEMYRDI 553
I CK + A ++ R +Q MK P ++ + H ++ ++R++
Sbjct: 595 ISGLCKAGRVQVASRLLRSIQ-MKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREM 649
>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g41170, mitochondrial; Flags: Precursor
gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 527
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 87/216 (40%), Gaps = 18/216 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID+L + G + A + D ME G D Y SL+ +R+A++LL+ M K
Sbjct: 181 TTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTK 240
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ + +++ + K F D AE L EM + I+
Sbjct: 241 ----RKIKPDVITFNALIDAFVKEGKFLD----------AEELYNEMIRMSIAPNIFTYT 286
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
S I FC + +A +++ M+ P V + L+ G + D ++ ++ +
Sbjct: 287 SLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQK 346
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
+G + Y TL+ F Q G EV +M
Sbjct: 347 GLTG----NTITYTTLIQGFGQVGKPNVAQEVFSHM 378
>gi|255661110|gb|ACU25724.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 431
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 81/179 (45%), Gaps = 18/179 (10%)
Query: 378 GESTLCSDVIDALIQL----GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE 433
GE + D+++ + + G L AA + + G S TY S+++++ K F+E
Sbjct: 260 GEDSFDIDMVNTYLSIFLAKGKLSAACKLFEIFTNMGVDPVSYTYNSIMSSFVKKGYFKE 319
Query: 434 AEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE 493
A +L M ++ +++ V+ + + M ++DLA +++ ++ +E
Sbjct: 320 AWGVLHAMGETVYPADIATYNVIIQGLGK--------------MGRADLANAVLDKLMKE 365
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
I N+ I K I +A K++++M+ I P V T+ L+ HS +D
Sbjct: 366 GGYLDIVMYNTLINALGKAGRIDEANKLFQQMKASGINPDVVTYNTLIEVHSKAGRLKD 424
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S I L + LE A ++++ME
Sbjct: 65 LIDGLYKNGRAEAAYTMFLDLKRKGNNFVDGITYSIAILHLCREDQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + E L+K +R LV +L
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWTERLMKHVRDGNLVPSL 165
>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
Length = 668
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/295 (20%), Positives = 109/295 (36%), Gaps = 25/295 (8%)
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
L + A+ LI+ G+ +E L L + + ++ +++ L+ A
Sbjct: 259 LTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNA 318
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
+LD+M G D TY L+ AY + + A LLK+M + + +
Sbjct: 319 EQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAG 378
Query: 460 FSEVADKSASFT---------------------DTSSLMDKSDLAESLIQEMREEAALST 498
F + D +F DT + A +MREE
Sbjct: 379 FRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPD 438
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG 558
+ N+ I CKG A +++ M+E P T+ ++ E + + +
Sbjct: 439 VVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLS 498
Query: 559 DIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++K E G L + Y TL+ + + G ++ ++ I MK + MY +
Sbjct: 499 EMK---EQG-LVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHA 549
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 94/203 (46%), Gaps = 24/203 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+IDA + G + A ++ ++M + P +TTY ++ + + + EA+L +M++
Sbjct: 445 LIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQG 504
Query: 446 LVQNLSCEMVV------SERFSEVAD-----KSASFTDTSSLMDK----------SDLAE 484
LV N+ + S R+ E D K+ + ++ +D A
Sbjct: 505 LVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHAL 564
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
++++ M+ + +I LNS I F + + + +A + + M+E +RP V T+ L+
Sbjct: 565 NVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKAL 624
Query: 545 SSLEMYRDITILWGDIKRNIESG 567
+E + + +++ ++ I SG
Sbjct: 625 IRVEQFDKVPVIYEEM---ITSG 644
>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1136
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 99/484 (20%), Positives = 186/484 (38%), Gaps = 62/484 (12%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
I PD FN++++ GS K ++M+ M ++G A +I+ + C++ K
Sbjct: 229 ICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGY---APTIVTYNTVLHWYCKKGRFK 285
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNP----KL 288
+D + + Y L+ + + I A G L+L R R PN L
Sbjct: 286 AAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRI-AKGYLLLRDMRKRMIHPNEVTYNTL 344
Query: 289 RQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILK---MEG--KQELVLF---RNGKL 340
+ I S L L + P + ++++ EG K+ L +F L
Sbjct: 345 INGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGL 404
Query: 341 LHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAH 400
S + L++G K+ + + +K+ G T + +ID L + GFL+ A
Sbjct: 405 TPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITY-TGMIDGLCKNGFLDEAV 463
Query: 401 DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERF 460
+L++M G D TY +L+ + KV F+ A+ ++ ++ + L N ++ S
Sbjct: 464 VLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPN---GIIYSTLI 520
Query: 461 SEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALK 520
L + + E++I E + N + CK + +A +
Sbjct: 521 YNCC-------RMGCLKEAIRIYEAMILEGHTRDH----FTFNVLVTSLCKAGKVAEAEE 569
Query: 521 IYRRMQEMKIRPTVETFYYLV--YGHS-----SLEMYRDIT--------ILWGDIKRNIE 565
R M I P +F L+ YG+S + ++ ++T +G + + +
Sbjct: 570 FMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLC 629
Query: 566 SG----------------VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKL 609
G AV +Y TLL + G + + + G M ++++ D
Sbjct: 630 KGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSY 689
Query: 610 MYKS 613
Y S
Sbjct: 690 TYTS 693
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A SL+ +M E I N+ I CK + + DAL ++ + IRP V T+ LV
Sbjct: 174 AVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVN 233
Query: 543 GHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
G + + D L D IKR I V+ Y LL F++ G E+ M +
Sbjct: 234 GLCNSGRWNDAARLLRDMIKRKITPNVIT-----YSALLDAFVKNGKVLEAKEIFEEMVR 288
Query: 602 QNMYVDKLMYKS 613
++ D + Y S
Sbjct: 289 MSIDPDIVTYSS 300
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 92/234 (39%), Gaps = 30/234 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+++ L G A +L DM + TY +LL A+ K EA+ + ++M +
Sbjct: 231 LVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMS 290
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ ++ +S + L D+ D A + M + + N+
Sbjct: 291 IDPDIV--------------TYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTL 336
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I FCK K + D +K++R+M + + T+ L+ G + GD+ + E
Sbjct: 337 INGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQV----------GDVDKAQE 386
Query: 566 ----SGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
VS D+ Y LL G E+ + + M+K M +D + Y +
Sbjct: 387 FFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTT 440
>gi|410110129|gb|AFV61144.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
pusilla]
Length = 381
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 110/237 (46%), Gaps = 20/237 (8%)
Query: 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
G+ L S++I+ +L A I ++ +G D Y +++ + K K+FREA +L
Sbjct: 3 GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSL 62
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
+ +M+ + ++ N + + + E + F + A S+ EMRE L
Sbjct: 63 ISEMKTAGVMPNTTSYSTLLTMYVE----NKKFLE----------ALSVFSEMREIKCLL 108
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ N I + + M +A K++ M++M I P V ++ L+ + E++ + L+
Sbjct: 109 DLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 168
Query: 558 GDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++R NIE V+ Y ++++ + + E+ +I M+ + + + + Y +
Sbjct: 169 RLMQRKNIEQNVVT-----YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYST 220
>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Vitis vinifera]
Length = 819
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 120/265 (45%), Gaps = 25/265 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCS--DVIDALIQLGFLEAAHDILDDME 407
LI+GY K G+ E + +K E+ E T+ + +++ L + +E A +L++ME
Sbjct: 258 LIDGYCKVGQLEEAFNIRERMKVENV---EPTIITFNSLLNGLCRAQMMEEAQRVLEEME 314
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ-MRKSCLVQNLSCEMVVSERFSEVADK 466
+ G D TY +L + K + L ++ +RK + + +C ++++ E
Sbjct: 315 VYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKE---- 370
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
M+K AE ++++ E N+ + +C+ I A +M+
Sbjct: 371 --------GNMEK---AEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKME 419
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
+ +RP T+ LV + +++ IK+ +E GVL + + Y TL+ + +
Sbjct: 420 AVGLRPNHVTYNSLVKKFCEM---KNMEEAEKCIKKMVEKGVLP-NVETYNTLIDGYGRS 475
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMY 611
F+R +++ M+K+ + + + Y
Sbjct: 476 CLFDRCFQILEEMEKKGLKPNVISY 500
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 111/280 (39%), Gaps = 33/280 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID + + IL++ME G + +Y L+ K EAE +L M
Sbjct: 468 LIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRG 527
Query: 446 LVQNL---------SC-------------EMVVSERFSEVADKSASFTDTSSLMDKSDL- 482
+V N SC EMV E + + + L K +
Sbjct: 528 VVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILI---NGLCKKGKVM 584
Query: 483 -AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
AE+L E+ + + NS I + + AL++Y M++ I+PT+ T++ L+
Sbjct: 585 EAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLI 644
Query: 542 YGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
G ++ +L I + + L R +Y L+ +++ G ++ + M+
Sbjct: 645 AGCG-----KEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEA 699
Query: 602 QNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLV 641
Q + DK+ Y L H K R KV N + + + L+
Sbjct: 700 QGIQPDKMTYNCLILGHFKE-GRMHKVKNLVNDMKIRGLI 738
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 99/249 (39%), Gaps = 43/249 (17%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+++ Q+G + A+ ++ ME G + TY SL+ + ++K EAE +K+M +
Sbjct: 398 IVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKG 457
Query: 446 LVQNLSCEMVVSERFSEVAD---KSASFTDTSSL---MDKSDL----------------- 482
++ N+ E ++ + D +S F + M+K L
Sbjct: 458 VLPNV-------ETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKD 510
Query: 483 -----AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
AE ++ +M + N I C + DA + + M +I PT+ T+
Sbjct: 511 ANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTY 570
Query: 538 YYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNFLQGGYFERVMEV 595
L+ G + L +I R +S D+ Y +L+ + G ++ +E+
Sbjct: 571 NILINGLCKKGKVMEAENLASEITRK------GLSFDVITYNSLISGYSSAGNVQKALEL 624
Query: 596 IGYMKKQNM 604
MKK +
Sbjct: 625 YETMKKSGI 633
>gi|296083087|emb|CBI22491.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/329 (19%), Positives = 141/329 (42%), Gaps = 36/329 (10%)
Query: 315 PELLEKDSILKMEGKQE-----LVLFRNGKLLHSNRAMAK---LINGYKKHGKNSELSWL 366
P + ++++KM G + + +F + K + + L++ + ++G +SE+S +
Sbjct: 137 PNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGV 196
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
+K+ T + +I + + G + A + M AG D ++Y ++L A
Sbjct: 197 FKEMKRAGFVPERDTF-NTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALA 255
Query: 427 KVKMFREAEALLKQMRKS-CLVQNLS-CEMV---------------VSERFSEVADKSAS 469
+ +++++E +L +M+ C L+ C ++ E +S + + A
Sbjct: 256 RGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAV 315
Query: 470 FTDTSSLMD-KSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
T L++ K DL E E+R+ I LN+ + + + +M+ A +I M
Sbjct: 316 LLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCM 375
Query: 526 QEMKIRPTVETFYYLVYGHS-SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
+ P++ T+ L+Y +S S R IL + + I +++ Y T++ +
Sbjct: 376 KRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIIS-----YNTVIYAYC 430
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ G V+ M++ D + Y +
Sbjct: 431 RNGRMRDASRVLSEMRESGPAPDIITYNT 459
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 78/419 (18%), Positives = 165/419 (39%), Gaps = 89/419 (21%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIH-------EMN 225
IKPD + +L + G I E M G + + L ++H EM
Sbjct: 100 IKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMM 159
Query: 226 CQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPN 285
+++K F+C D ++ + +LLS+ F + +D+ + + +P
Sbjct: 160 KVFEDIKTFQCSPDIVT----------WNTLLSV-FGQNGMDSEVSGVFKEMKRAGFVP- 207
Query: 286 PKLRQDAQKPYLISIGSPNLRCG------------LKLQIMPELLEKDSILKMEGKQELV 333
++ ++ S RCG L+ + P+L +++L
Sbjct: 208 -------ERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLA-------A 253
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES-------TLCSDV 386
L R G S + +A++ +G K +EL++ L H++ L ++
Sbjct: 254 LARGGLWKQSEKVLAEMKDG---RCKPNELTYCSL-----LHAYANGKEIERMCALAEEI 305
Query: 387 IDALIQ--------LGFLEAAHDILDDMELA-------GHPMDSTTYKSLLTAYYKVKMF 431
+I+ L + + D+L + E A G D TT ++++ Y + +M
Sbjct: 306 YSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMV 365
Query: 432 REAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491
+A +L M++ +L+ + +S +SA+F + +E +++E+
Sbjct: 366 AKANEILDCMKRGGFTPSLTTYNSLMYMYS----RSANF----------ERSEEILREIL 411
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMY 550
+ I N+ IY +C+ + DA ++ M+E P + T+ + +++ M+
Sbjct: 412 AKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMF 470
>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
Length = 671
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 101/231 (43%), Gaps = 17/231 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KS 444
V+DAL + G + AHD++D M G + TY +L+ + + EA + M K
Sbjct: 277 VVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKG 336
Query: 445 CLVQNLSCEMVVSERFS-EVADKSASFTDTSSLMDKS------DLAESLIQEMREEAALS 497
C+ +S +++ + DK+ +T LMD D A + M + +
Sbjct: 337 CMPNVISYNTLINGYCKIQRIDKAIHYT---XLMDXXCCYLNMDEAVKVFDTMVCKGCMP 393
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ N+ I +CK + I A+ ++ M ++ P T+ L++G +E +D L+
Sbjct: 394 NVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALF 453
Query: 558 GDIKRNIESGVLAVSRDLYETLLLNFL-QGGYFERVMEVIGYMKKQNMYVD 607
++ + L R +LL++L + Y M ++ ++ N+ D
Sbjct: 454 HEMVACSQIPNLVTYR-----ILLDYLCKNRYLAEAMALLKAIEGSNLDPD 499
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 111/271 (40%), Gaps = 31/271 (11%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LIN + + +L I K H +T + + ++ EA H + D M
Sbjct: 102 LINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALH-LFDKMIGE 160
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSC---------LVQNLSCEMVVSER 459
G D TY +L+ KV A LL M +K+C ++ +L + V+E
Sbjct: 161 GFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEA 220
Query: 460 F---SEVADKSAS---FTDTSSLMDKSDLAE-----SLIQEMREEAALSTIYKLNSSIYF 508
F SE+ K S FT S + +L E +L+ EM + + + N+ +
Sbjct: 221 FNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDA 280
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL-EMYRDITILWGDIKRNIESG 567
CK + +A + +M + + P V T+ L+ GH L EM + + + +
Sbjct: 281 LCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPN 340
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGY 598
V++ Y TL+ + + +R+ + I Y
Sbjct: 341 VIS-----YNTLINGYCK---IQRIDKAIHY 363
>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 119/291 (40%), Gaps = 22/291 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+GY K + LL E ++T + +I +G L AA D+L +M +
Sbjct: 401 LIDGYCG-AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISS 459
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D T +LL ++A + K M+KS ++ S F+ V +
Sbjct: 460 GLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKS------KKDLDASHPFNGVEPDVQT 513
Query: 470 FTD-TSSLMDKSDL--AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ S L+++ AE L +EM + +S I CK + +A +++ M
Sbjct: 514 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMG 573
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
P V TF L+ G+ D L+ ++ R G++A + Y TL+ F +
Sbjct: 574 SKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRR---GIVA-NAITYITLICGFRKV 629
Query: 587 GYFERVMEVIGYMKKQNMYVDKL--------MYKSEFLKHHKHLYRRLKVS 629
G +++ M +Y D + ++ E LK + +L++S
Sbjct: 630 GNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQMS 680
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 103/260 (39%), Gaps = 18/260 (6%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+++G K G LL +++ H + S +ID+L + G A ++ +M+
Sbjct: 223 GTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY S++ + + +AE LL++M L + +S ++V K
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM----LERKISPDVVTYNALINAFVKE 338
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
F + AE L EM + +S I FCK + A ++ M
Sbjct: 339 GKFFE----------AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
P + TF L+ G+ + D L ++ E+G++A Y TL+ F G
Sbjct: 389 KGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT---ETGLVA-DTTTYNTLIHGFYLVG 444
Query: 588 YFERVMEVIGYMKKQNMYVD 607
++++ M + D
Sbjct: 445 DLNAALDLLQEMISSGLCPD 464
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 13/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ L + G + A +LD M G TY +++ K+ A LL++M +
Sbjct: 188 TTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEE 247
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ ++ +V+ + K +D A++L EM+E+ ++ N
Sbjct: 248 ---ISHIIPNVVIYSAIIDSLCKDGRHSD----------AQNLFTEMQEKGIFPDLFTYN 294
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
S I FC DA ++ + M E KI P V T+ L+
Sbjct: 295 SMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALI 332
>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Cucumis sativus]
Length = 645
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 23/200 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK-- 443
+ID L + G ++AA ++ +M + Y SL+ AY KV EA AL ++ +
Sbjct: 293 LIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFE 352
Query: 444 --------SCLVQNLSCEMVVSERFSEVADKS------ASFTDTSSLMD------KSDLA 483
S L++ L C + +E + +K A+ +SL+D K D A
Sbjct: 353 VSPDVFTYSILIRGL-CSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKA 411
Query: 484 ESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ +M E + ++ I +CK + + A+ IY M + P V T+ ++ G
Sbjct: 412 LEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDG 471
Query: 544 HSSLEMYRDITILWGDIKRN 563
H ++ L+ D+ N
Sbjct: 472 HCKYGSMKEALKLYSDMLDN 491
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 99/493 (20%), Positives = 185/493 (37%), Gaps = 78/493 (15%)
Query: 147 LASNFLIQLCDVFLHLSAEK--------------SNGAELIKPDTMIFNLVLHACVRFGS 192
+ + IQ C+V L++ + SNG + P + F ++ C R G
Sbjct: 141 VGAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNG---LSPSVITFGTLIDGCCRQGD 197
Query: 193 SLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQF 252
L+ Q + + M G+V ++I+ + C +++++ + + +
Sbjct: 198 LLRAQEMFDEMRVKGIVP---TVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYT 254
Query: 253 YESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQ 312
Y +L+ + K + A L DM + P +++ G
Sbjct: 255 YNTLMDGYCKLANAKQALRLYQDM------------LGEGLVPDVVTFG----------- 291
Query: 313 IMPELLEKDSILKM-EGKQELVLFRNGKLLHSNRAMA---KLINGYKKHGKNSELSWLLL 368
+ D + K E K LF N +A LI+ Y K G SE L L
Sbjct: 292 -----ILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFL 346
Query: 369 SIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV 428
+++ S T S +I L + E A +I + M G +S TY SL+ K
Sbjct: 347 ELERFEVSPDVFTY-SILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKE 405
Query: 429 KMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQ 488
+A + QM ++ + N+ FS + D + + M +
Sbjct: 406 GKMDKALEICSQMTENGVEPNVI-------TFSTLIDGYCKIRNLQAAM-------GIYS 451
Query: 489 EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG----- 543
EM ++ + + I CK + +ALK+Y M + I P T L+ G
Sbjct: 452 EMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDG 511
Query: 544 --HSSLEMYRDITILWGDIKRNIESGVLAVSRD---LYETLLLNFLQGGYFERVMEVIGY 598
+LE++ + I + + N+++G S Y L+ Q G F + +++
Sbjct: 512 KISDALELFTE-KIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSD 570
Query: 599 MKKQNMYVDKLMY 611
M++ + D+++Y
Sbjct: 571 MRRYGLQPDEVIY 583
>gi|224102855|ref|XP_002312829.1| predicted protein [Populus trichocarpa]
gi|222849237|gb|EEE86784.1| predicted protein [Populus trichocarpa]
Length = 734
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 91/219 (41%), Gaps = 24/219 (10%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
L +A ILD M+ G Y ++ + + EAE L +MR+ L + M
Sbjct: 470 LASAFGILDQMKEMGPKPSVAIYDCIIACLSQQRRISEAETLFHRMRRDGLDPDEVAYMT 529
Query: 456 ----------------VSERFSEVADKSASFTDTSSLMDK-SDLAESLIQEMREEAALST 498
+ E+ E A + +S++ TS + + DLA L+Q+++ +
Sbjct: 530 MINAYARDGRGDKALNLFEKMIENAIQPSSYSYTSLISGELKDLASKLMQKIKGTRFMPY 589
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS-SLEMYRDITILW 557
+Y N I+ FC M+ DA ++ MQ+ I P TF L+ H + E+ R I
Sbjct: 590 LYLYNIIIFGFCWANMMQDAHHQFKLMQKEGIHPNA-TFTILIGAHGRAGEIDRAI---- 644
Query: 558 GDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVI 596
G R G R Y TLL + + G EVI
Sbjct: 645 GLFNRMSADGCTP-DRCAYSTLLKSLCESGDPMVFFEVI 682
>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
Length = 701
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 14/166 (8%)
Query: 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
+ST +I+ L + G+L A IL++ E G +D+ Y S++ K M +A L
Sbjct: 392 ADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVEL 451
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
+ QM+K+ N S F+ S + K + A S+++EM+ +
Sbjct: 452 IHQMKKNRRKLN-------SHVFN-------SLINGYVRAFKLEEAISVLREMKSKDCAP 497
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
T+ N+ I CK + DA + M E ++P + T+ L+ G
Sbjct: 498 TVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDG 543
Score = 42.4 bits (98), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 89/200 (44%), Gaps = 27/200 (13%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LING K+G ++ +L + E ++ S ++ L + G LE A +++ M+
Sbjct: 400 LINGLCKNGYLNKALRILEEAENEGADL-DTFAYSSMVHGLCKKGMLEQAVELIHQMKKN 458
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVV-----SERFSEV 463
++S + SL+ Y + EA ++L++M+ K C +S ++ +ERFS+
Sbjct: 459 RRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSD- 517
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
A ++EM EE + + I C+G+ + AL ++
Sbjct: 518 -------------------AYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWH 558
Query: 524 RMQEMKIRPTVETFYYLVYG 543
+ +++P ++ +++G
Sbjct: 559 QCINKRLKPDLQMHNIIIHG 578
>gi|297811615|ref|XP_002873691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319528|gb|EFH49950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 938
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 83/196 (42%), Gaps = 15/196 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ +IN K GK E LLL +E + + ++D+L + A + M
Sbjct: 263 SSIINRLCKDGKVME-GGLLLREMEEMGVYPNHVTYTTLVDSLFKAKDYRHALALYSQMV 321
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
+ G P+D Y L+ +K REAE K + + V N+ + + + D S
Sbjct: 322 VRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLLEDNEVPNVVTYTALVDGLCKAGDLS 381
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ AE +I +M E++ + +S I + K M+ +A+ + R+M++
Sbjct: 382 S--------------AEFIITQMLEKSVFPNVVTYSSMINGYVKKGMLEEAVSLMRKMED 427
Query: 528 MKIRPTVETFYYLVYG 543
+ P T+ ++ G
Sbjct: 428 QNVVPNGFTYGTVIDG 443
Score = 39.3 bits (90), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 18/163 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +I+ L + G + +L +ME G + TY +L+ + +K K +R A AL QM
Sbjct: 263 SSIINRLCKDGKVMEGGLLLREMEEMGVYPNHVTYTTLVDSLFKAKDYRHALALYSQM-- 320
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL--AESLIQEMREEAALSTIYK 501
+V+ + ++VV + L DL AE + + E+ + +
Sbjct: 321 --VVRGIPVDLVVYTVL------------MAGLFKAGDLREAEKTFKMLLEDNEVPNVVT 366
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ + CK + A I +M E + P V T+ ++ G+
Sbjct: 367 YTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGY 409
Score = 39.3 bits (90), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 24/218 (11%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEH---HSFGESTLCSDVIDALIQLGFLEAAHDILD 404
+ +INGY K G E L+ ++ ++ + F T VID L + G E A ++
Sbjct: 403 SSMINGYVKKGMLEEAVSLMRKMEDQNVVPNGFTYGT----VIDGLFKAGKQEVASEMSK 458
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEV 463
+M L G ++ +L+ ++ +E + L+K M K + +++ ++ + F +
Sbjct: 459 EMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDHINYTSLI-DVFFKG 517
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
D+ A+ S +EM+E+ + N I K +G A Y+
Sbjct: 518 GDEEAAL--------------SWAEEMQEKEMPWDVVSYNVLISGLLKFGKVG-ADWAYK 562
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
M+E I P + TF ++ + I LW +K
Sbjct: 563 GMREKGIEPDIATFNIMMNSQRKQGDFEGILKLWDKMK 600
Score = 38.9 bits (89), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 16/173 (9%)
Query: 382 LCSDVIDALIQLGFLEAAHDILDDME-LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
+C+ V+ L + G ++ A DILD M + HP + TTY+ L K + A+A+ K
Sbjct: 610 ICNIVVGMLCEKGKMKEAIDILDQMMFMEIHP-NLTTYRIFLDMSSK---HKRADAIFK- 664
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
+ E ++S + T + + A ++++M +
Sbjct: 665 ----------THETLLSYGIKLSRQVYNTLIATLCKLGMTRKAAMVMEDMEARGFVPDTV 714
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI 553
N+ ++ + G +G AL Y M E I P V T+ ++ G S + +++
Sbjct: 715 TFNALMHGYFVGSHVGKALSTYSMMMEAGISPNVATYNTIIRGLSDAGLIKEV 767
>gi|356507504|ref|XP_003522504.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Glycine max]
Length = 555
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 5/173 (2%)
Query: 373 EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
EH F + +I L + G E A +I + ME G T+ +L+ K
Sbjct: 181 EHQGFHNVCTHTIIICDLCKRGMAEKAQEIFNKMEKLGCFPSIVTFNALMDGLCKAGKLE 240
Query: 433 EAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL--AESLIQEM 490
EA LL +M + ++ S +S+ +V D A + + L A L+ ++
Sbjct: 241 EAHLLLYKME---IGRSPSLFFRLSQGSDQVLDSVALQKKVEQMCEAGQLLDAYKLLIQL 297
Query: 491 REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ I N I FCK I ALK+++ MQ + P T+ L+ G
Sbjct: 298 AGSGVMPDIVTYNVLINGFCKASNINGALKLFKDMQNKGLSPNPVTYGTLIDG 350
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 23/209 (11%)
Query: 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDV-IDALIQLGFLEAAHDILDDMELAGHPMDS 415
H K ++ + L ++ KE F +C V I+ +LG LE A L +E G +
Sbjct: 25 HVKRADEAHRLFNVMKER-GFQPDLICYSVLINGYCKLGRLEEAISFLRLLERDGLALGI 83
Query: 416 TTYKSLLTAYYKVKMFREAEALLKQMRK----------SCLVQNLSCEMVVSE------- 458
Y SL+ ++ + + EA A +M K + L++ LS E V E
Sbjct: 84 KGYSSLIAGFFSARRYNEAHAWYGRMFKKGIVPDVVLYTILIRGLSSEGRVGEAAKMLGE 143
Query: 459 --RFSEVADKSASFTDTSSLMDKS--DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKM 514
+ V D L D D A SL E+ E + I CK M
Sbjct: 144 MIQIGLVPDAVCYNEIIKGLCDVGLLDRARSLQLEISEHQGFHNVCTHTIIICDLCKRGM 203
Query: 515 IGDALKIYRRMQEMKIRPTVETFYYLVYG 543
A +I+ +M+++ P++ TF L+ G
Sbjct: 204 AEKAQEIFNKMEKLGCFPSIVTFNALMDG 232
>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 793
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 97/219 (44%), Gaps = 22/219 (10%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
+ A +L +MEL G P TY SL+++Y K + +EA L ++M V+ + +++
Sbjct: 301 DEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEME----VKGIQPDVIT 356
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
D++ K D A EM + N+ I
Sbjct: 357 YTTLISGLDRAG----------KIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFP 406
Query: 517 DALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD 574
+ + ++ ++ P V T+ L V+G + L+ +++ ++ ++K+ SG + RD
Sbjct: 407 EMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLD--SEVSGVFKEMKK---SGYVP-ERD 460
Query: 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y +L+ ++ + G F++ ME+ M + +Y D Y +
Sbjct: 461 TYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNA 499
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 43/230 (18%), Positives = 98/230 (42%), Gaps = 18/230 (7%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I + ++ G L+ A ++ ++ME+ G D TY +L++ + A +M +
Sbjct: 323 NSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLR 382
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ NL C + V K F + ++ D ++R + + N
Sbjct: 383 NGCKPNL-CTYNALIKLHGVRGK---FPEMMAVFD----------DLRSAGFVPDVVTWN 428
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ + F + + + +++ M++ P +T+ L+ +S ++ ++ KR
Sbjct: 429 TLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIY---KRM 485
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
IE+G+ Y +L +GG +E+ ++ M+ + D+L Y S
Sbjct: 486 IEAGIYP-DISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSS 534
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIES-- 566
F + DA+ ++RRM I+P + T+ + L +Y I + W D+ ++S
Sbjct: 188 FSRASRFRDAVAVFRRMVANGIQPAIVTYNVV------LHVYSKIAVPWKDVVALVDSMK 241
Query: 567 -GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + R Y TL+ +G ++ +V M+ DK+ + S
Sbjct: 242 NDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNS 289
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 14/142 (9%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
++D M+ G P+D TY +L++ + +++EA + +MR + F
Sbjct: 236 LVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAG--------------FE 281
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
S D D A +++EM ++ NS I + K ++ +A ++
Sbjct: 282 PDKVTFNSLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAEL 341
Query: 522 YRRMQEMKIRPTVETFYYLVYG 543
M+ I+P V T+ L+ G
Sbjct: 342 KEEMEVKGIQPDVITYTTLISG 363
>gi|410110085|gb|AFV61122.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
fucata]
Length = 382
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 110/237 (46%), Gaps = 20/237 (8%)
Query: 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
G+ L S++I+ +L A I ++ +G D Y +++ + K K+FREA +L
Sbjct: 3 GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSL 62
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
+ +M+ + ++ N + + + E + F + A S+ EMRE L
Sbjct: 63 IGEMKAAGVMPNTTSYSTLLTMYVE----NKKFLE----------ALSVFSEMREIKCLL 108
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ N I + + M +A K++ M++M I P V ++ L+ + E++ + L+
Sbjct: 109 DLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 168
Query: 558 GDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++R NIE V+ Y ++++ + + E+ +I M+ + + + + Y +
Sbjct: 169 RLMQRKNIEQNVVT-----YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYST 220
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 87/416 (20%), Positives = 159/416 (38%), Gaps = 65/416 (15%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
P+ +N VLH + ++E M G D ++ + C+ D++ +
Sbjct: 77 PNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPD---VVSYTTVINGLCKLDQVDEA 133
Query: 235 KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQK 294
+D++ Y +L+ + D+D A EL+ M R PN
Sbjct: 134 CRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTE-RGYRPN--------- 183
Query: 295 PYLISIGSPNLRCGL--------KLQIMPELLEKDSILKMEGKQELV---LFRNGKLLHS 343
+I N+ GL LQ+ E+ E S + L ++GK+ +
Sbjct: 184 ----AITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDA 239
Query: 344 NRAM---------------AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVID 388
R + + L++G K GK E + LL + + S T + +ID
Sbjct: 240 CRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTY-NTIID 298
Query: 389 ALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQ 448
+LG ++ A+ +L++M G + TY LL A+ K +A L++ M + V
Sbjct: 299 GHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVP 358
Query: 449 NL------------------SCEMVVSERFSEVADKSASF-TDTSSLMDKSDLAES--LI 487
NL +C+++ S S+ T + L + + E L+
Sbjct: 359 NLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLL 418
Query: 488 QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
++M + I N+ I CK + A +++ +QE P + T+ LV+G
Sbjct: 419 EQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHG 474
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 79/186 (42%), Gaps = 22/186 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-- 441
+ VI+ L +L ++ A ++D M G + TY +L+ + +V A L+++M
Sbjct: 118 TTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTE 177
Query: 442 ---RKSCLVQNLSCEMVVSER--------FSEVADKSASFTDT---SSLMD------KSD 481
R + + N + S R F E+ + + D S+++D K D
Sbjct: 178 RGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVD 237
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
A L++ M + + +S ++ CK + +A + +RM P + T+ ++
Sbjct: 238 DACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTII 297
Query: 542 YGHSSL 547
GH L
Sbjct: 298 DGHCKL 303
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 63/137 (45%), Gaps = 6/137 (4%)
Query: 478 DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
D+ D A L++EM + ++ N+ ++ FCK + +AL + +M P V ++
Sbjct: 58 DRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSY 117
Query: 538 YYLVYGHSSLEMYRDIT-ILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVI 596
++ G L+ + ++ I+R + V+ Y TL+ F + G + +E++
Sbjct: 118 TTVINGLCKLDQVDEACRVMDKMIQRGCQPNVIT-----YGTLVDGFCRVGDLDGAVELV 172
Query: 597 GYMKKQNMYVDKLMYKS 613
M ++ + + Y +
Sbjct: 173 RKMTERGYRPNAITYNN 189
>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 119/291 (40%), Gaps = 22/291 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+GY K + LL E ++T + +I +G L AA D+L +M +
Sbjct: 401 LIDGYCG-AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISS 459
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D T +LL ++A + K M+KS ++ S F+ V +
Sbjct: 460 GLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKS------KKDLDASHPFNGVEPDVQT 513
Query: 470 FTD-TSSLMDKSDL--AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ S L+++ AE L +EM + +S I CK + +A +++ M
Sbjct: 514 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMG 573
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
P V TF L+ G+ D L+ ++ R G++A + Y TL+ F +
Sbjct: 574 SKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRR---GIVA-NAITYITLICGFRKV 629
Query: 587 GYFERVMEVIGYMKKQNMYVDKL--------MYKSEFLKHHKHLYRRLKVS 629
G +++ M +Y D + ++ E LK + +L++S
Sbjct: 630 GNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQMS 680
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 103/260 (39%), Gaps = 18/260 (6%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+++G K G LL +++ H + S +ID+L + G A ++ +M+
Sbjct: 223 GTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY S++ + + +AE LL++M L + +S ++V K
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM----LERKISPDVVTYNALINAFVKE 338
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
F + AE L EM + +S I FCK + A ++ M
Sbjct: 339 GKFFE----------AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
P + TF L+ G+ + D L ++ E+G++A Y TL+ F G
Sbjct: 389 KGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT---ETGLVA-DTTTYNTLIHGFYLVG 444
Query: 588 YFERVMEVIGYMKKQNMYVD 607
++++ M + D
Sbjct: 445 DLNAALDLLQEMISSGLCPD 464
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ L + G + A +LD M G TY +++ K A LL++M +
Sbjct: 188 TTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEE 247
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
V ++ +V+ + K +D A++L EM+E+ ++ N
Sbjct: 248 ---VSHIIPNVVIYSAIIDSLCKDGRHSD----------AQNLFTEMQEKGIFPDLFTYN 294
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
S I FC DA ++ + M E KI P V T+ L+
Sbjct: 295 SMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALI 332
>gi|195620494|gb|ACG32077.1| membrane-associated salt-inducible protein [Zea mays]
Length = 393
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/200 (19%), Positives = 87/200 (43%), Gaps = 14/200 (7%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
S R++ LI G ++E + + + H + + +I + + G + + + +
Sbjct: 135 STRSLNALIFACIVSGNHTEXARVFQTFPDAHGVKPNTETFNAIIKSFAESGTIRSFYSV 194
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462
D+M G +S T+ + L +YK + F + + +L+ M+K+ ++L V + +
Sbjct: 195 FDEMCKKGLKPNSITFTTALAGFYKEEKFDDIKKVLELMKKNGCGESLPVYNVRVQSLCK 254
Query: 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
+ +S A +L+ EM ++ N IY FCK + +A ++Y
Sbjct: 255 --------------LGRSGEARALVDEMMKKGTKPNWVTYNHLIYGFCKEGDLEEAKRLY 300
Query: 523 RRMQEMKIRPTVETFYYLVY 542
+ M + + ++ L+Y
Sbjct: 301 KEMGRKGLVGDSDFYFMLIY 320
>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
Length = 704
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 39/250 (15%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
LE A ++ ++M+ +G T+ L+ A+ K EA LK+M+ L ++V
Sbjct: 193 LEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMK----FMGLEADLV 248
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
V F D L D ++L E+ E N+ I FCK +
Sbjct: 249 VYTSLIR------GFCDCGEL----DRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQL 298
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD- 574
+A +I+ M E +RP V T+ L+ G + G K ++ L + +D
Sbjct: 299 KEASEIFEFMIERGVRPNVYTYTGLIDGLCGV----------GKTKEALQPLNLMIEKDE 348
Query: 575 -----LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY---------KSEFLKHHK 620
Y ++ + G +E++ MKK+ D + Y K + + K
Sbjct: 349 EPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASK 408
Query: 621 HLYRRLKVSN 630
LY LK S+
Sbjct: 409 LLYLMLKDSS 418
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 110/260 (42%), Gaps = 36/260 (13%)
Query: 350 LINGYKKHGKNSELSWLL-LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
L+ G G E S LL L +K ++ + + +I L + L A DI D +
Sbjct: 393 LLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVE 452
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
D T LL + K +A L KQ+ S +V+N S+ ++ + D
Sbjct: 453 KLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRN-------SDTYTAMID--- 502
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
F T L ++A+ L+ +MR +++ N + CK + A +++ MQ
Sbjct: 503 GFCKTGML----NVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRD 558
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR-----DL--YETLLL 581
P V +F ++ G ++ GDIK + ES ++ +SR DL Y L+
Sbjct: 559 NNFPDVVSFNIMIDG----------SLKAGDIK-SAESLLVGMSRAGLSPDLFTYSKLIN 607
Query: 582 NFLQGGYFERVMEVIGYMKK 601
FL+ GY + E I + K
Sbjct: 608 RFLKLGYLD---EAISFFDK 624
>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 19/185 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I AL++ G + A +++DM G +D TY L+ A+ KV + L +QM
Sbjct: 534 NTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIM 593
Query: 444 SCL-VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
L +SC ++++ + K D A +++ + I
Sbjct: 594 DGLGADTISCNIMINGLCK---------------VGKVDNAFEFLRDAINRGFVPDIVTY 638
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
NS + CK I +AL ++ R+Q +RP T+ + M D + R
Sbjct: 639 NSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFF---YR 695
Query: 563 NIESG 567
IE+G
Sbjct: 696 GIENG 700
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 56/275 (20%), Positives = 104/275 (37%), Gaps = 61/275 (22%)
Query: 343 SNRAMAKLINGYKKHGKNSE----LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEA 398
+N + LINGY G+ E L+ +++ + F + L + L + G L
Sbjct: 353 NNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNIL----MHGLCKEGSLSF 408
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE 458
A D++++M G + TY L+ K + EA +L +M L N ++ +
Sbjct: 409 ARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTIN---SVIYNC 465
Query: 459 RFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDA 518
+ K +K +A +L+ EM + ++ NS IY CK I +A
Sbjct: 466 LICALCRK-----------EKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEA 514
Query: 519 LKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYET 578
+++ M +L G + N+ Y T
Sbjct: 515 FRLFHNM-----------------------------LLDGAVANNVT----------YNT 535
Query: 579 LLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
L+ L+ G F++ + ++ M + +DK+ Y
Sbjct: 536 LIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNG 570
>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12300, mitochondrial-like [Glycine max]
Length = 450
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 18/217 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I L G + A D + G D +Y +L+ K+ R A L++++
Sbjct: 144 TTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDG 203
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
N+ E ++ + D + S A L EM + + + N
Sbjct: 204 RLTKPNV-------EMYNTIIDALCKYQLVSE-------AYGLFSEMTAKGISANVVSYN 249
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
I FCK KM+ +AL +++ M + + PT+ T+ L+ G L I+ +W I
Sbjct: 250 IMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDG---LCKSGRISYVWELIDEM 306
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
+ G+ A Y +L+ + G+ +R + + MK
Sbjct: 307 HDRGIPA-DVITYNSLIDGLCKNGHLDRAIALFNKMK 342
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 18/236 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+++G K G LL +++ H + S +ID+L + G A ++ +M+
Sbjct: 223 GTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY S++ + + +AE LL++M L + +S ++V K
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM----LERKISPDVVTYNALINAFVKE 338
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
F + + L D EM + NS I FCK + A ++ M
Sbjct: 339 GKFFEAAELYD----------EMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMAT 388
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNF 583
P V TF L+ G+ + D L ++ R G++A + Y TL+ F
Sbjct: 389 KGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRR---GLVA-NTVTYNTLIHGF 440
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 95/231 (41%), Gaps = 13/231 (5%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I +G L AA D+ M +G D T +LL ++A + K M+KS
Sbjct: 436 LIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSK 495
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTD-TSSLMDKSDL--AESLIQEMREEAALSTIYKL 502
+ ++ S F+ V ++ L+++ AE L +EM +
Sbjct: 496 M------DLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITY 549
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
+S I CK + +A +++ M P V TF L+ G+ D L+ ++ R
Sbjct: 550 SSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGR 609
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G++A + +Y TL+ F + G +++ M +Y D + ++
Sbjct: 610 R---GIVADAI-IYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRN 656
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ L + G + A +LD M G TY +++ K A LL++M +
Sbjct: 188 TTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEE 247
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
V ++ +V+ + K +D A++L EM+E+ ++ N
Sbjct: 248 ---VSHIIPNVVIYSAIIDSLCKDGRHSD----------AQNLFTEMQEKGIFPDLFTYN 294
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
S I FC DA ++ + M E KI P V T+ L+
Sbjct: 295 SMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALI 332
Score = 38.9 bits (89), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
M++ DL SL Q+M + IY N I FC + AL + ++ ++ + P V T
Sbjct: 92 MERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVT 151
Query: 537 FYYLVYG 543
F L++G
Sbjct: 152 FTTLLHG 158
>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 119/291 (40%), Gaps = 22/291 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+GY K + LL E ++T + +I +G L AA D+L +M +
Sbjct: 401 LIDGYCG-AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISS 459
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D T +LL ++A + K M+KS ++ S F+ V +
Sbjct: 460 GLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKS------KKDLDASHPFNGVEPDVQT 513
Query: 470 FTD-TSSLMDKSDL--AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ S L+++ AE L +EM + +S I CK + +A +++ M
Sbjct: 514 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMG 573
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
P V TF L+ G+ D L+ ++ R G++A + Y TL+ F +
Sbjct: 574 SKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRR---GIVA-NAITYITLICGFRKV 629
Query: 587 GYFERVMEVIGYMKKQNMYVDKL--------MYKSEFLKHHKHLYRRLKVS 629
G +++ M +Y D + ++ E LK + +L++S
Sbjct: 630 GNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQMS 680
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 103/260 (39%), Gaps = 18/260 (6%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+++G K G LL +++ H + S +ID+L + G A ++ +M+
Sbjct: 223 GTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY S++ + + +AE LL++M L + +S ++V K
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM----LERKISPDVVTYNALINAFVKE 338
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
F + AE L EM + +S I FCK + A ++ M
Sbjct: 339 GKFFE----------AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
P + TF L+ G+ + D L ++ E+G++A Y TL+ F G
Sbjct: 389 KGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT---ETGLVA-DTTTYNTLIHGFYLVG 444
Query: 588 YFERVMEVIGYMKKQNMYVD 607
++++ M + D
Sbjct: 445 DLNAALDLLQEMISSGLCPD 464
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ L + G + A +LD M G TY +++ K A LL++M +
Sbjct: 188 TTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEE 247
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
V ++ +V+ + K +D A++L EM+E+ ++ N
Sbjct: 248 ---VSHIIPNVVIYSAIIDSLCKDGRHSD----------AQNLFTEMQEKGIFPDLFTYN 294
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
S I FC DA ++ + M E KI P V T+ L+
Sbjct: 295 SMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALI 332
>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 119/291 (40%), Gaps = 22/291 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+GY K + LL E ++T + +I +G L AA D+L +M +
Sbjct: 401 LIDGYCG-AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISS 459
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D T +LL ++A + K M+KS ++ S F+ V +
Sbjct: 460 GLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKS------KKDLDASHPFNGVEPDVQT 513
Query: 470 FTD-TSSLMDKSDL--AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ S L+++ AE L +EM + +S I CK + +A +++ M
Sbjct: 514 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMG 573
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
P V TF L+ G+ D L+ ++ R G++A + Y TL+ F +
Sbjct: 574 SKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRR---GIVA-NAITYITLICGFRKV 629
Query: 587 GYFERVMEVIGYMKKQNMYVDKL--------MYKSEFLKHHKHLYRRLKVS 629
G +++ M +Y D + ++ E LK + +L++S
Sbjct: 630 GNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQMS 680
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 103/260 (39%), Gaps = 18/260 (6%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+++G K G LL +++ H + S +ID+L + G A ++ +M+
Sbjct: 223 GTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY S++ + + +AE LL++M L + +S ++V K
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM----LERKISPDVVTYNALINAFVKE 338
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
F + AE L EM + +S I FCK + A ++ M
Sbjct: 339 GKFFE----------AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
P + TF L+ G+ + D L ++ E+G++A Y TL+ F G
Sbjct: 389 KGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT---ETGLVA-DTTTYNTLIHGFYLVG 444
Query: 588 YFERVMEVIGYMKKQNMYVD 607
++++ M + D
Sbjct: 445 DLNAALDLLQEMISSGLCPD 464
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ L + G + A +LD M G TY +++ K A LL++M +
Sbjct: 188 TTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEE 247
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
V ++ +V+ + K +D A++L EM+E+ ++ N
Sbjct: 248 ---VSHIIPNVVIYSAIIDSLCKDGRHSD----------AQNLFTEMQEKGIFPDLFTYN 294
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
S I FC DA ++ + M E KI P V T+ L+
Sbjct: 295 SMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALI 332
Score = 38.9 bits (89), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
M++ DL SL Q+M + IY N I FC + AL + ++ ++ + P V T
Sbjct: 92 MERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVT 151
Query: 537 FYYLVYG 543
F L++G
Sbjct: 152 FTTLLHG 158
>gi|410110081|gb|AFV61120.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
camara]
Length = 381
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
G+ L S++I+ +L A I ++ +G D Y +++ + K K+FREA +L
Sbjct: 2 GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSL 61
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
+ +M+ + + N + + + E + F + A S+ EMRE L
Sbjct: 62 ISEMKTAGVXPNTTSYSTLLTMYVE----NKKFLE----------ALSVFSEMREIKCLL 107
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ N I + + M +A K++ M++M I P V ++ L+ + E++ + L+
Sbjct: 108 DLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 167
Query: 558 GDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++R NIE V+ Y ++++ + + E+ +I M+ + + + + Y +
Sbjct: 168 RLMQRKNIEQNVVT-----YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYST 219
>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
Length = 730
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 82/184 (44%), Gaps = 14/184 (7%)
Query: 358 GKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTT 417
G +L++ ++S H S VID + G L+ A ++ ++M+ A +D +
Sbjct: 225 GGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVS 284
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477
Y +LL+ Y K+ F EA + K+M S + ++ + + +
Sbjct: 285 YNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGK--------------Q 330
Query: 478 DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
K + + + +EM+ E + ++ I + KG + +A++++R ++ ++ V +
Sbjct: 331 GKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLY 390
Query: 538 YYLV 541
L+
Sbjct: 391 SALI 394
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 15/210 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+ GY K GK E+ + +K E F S +ID + G + A ++ + + A
Sbjct: 323 LLGGYGKQGKYEEVKRVFEEMKAE-RIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKA 381
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D Y +L+ A K + A + L +M K + N+ + + F +S
Sbjct: 382 GLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFG----RSGI 437
Query: 470 FTDT--SSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKM-IGDALKIYRRMQ 526
D S + DK D +I+ + AA T + + +G+ I L ++ +M
Sbjct: 438 VEDATESEVGDKED--NQIIKIFGQLAAEKTCHAKKEN-----RGRQEILCILAVFHKMH 490
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
E+ I+P V TF ++ S + D ++L
Sbjct: 491 ELDIKPNVVTFSAILNACSRCNSFEDASML 520
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 98/236 (41%), Gaps = 27/236 (11%)
Query: 386 VIDALIQLGF-LEAAHDILDDMEL------AGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
VIDA + G A +I D+M L G D TY +LL A K A ++
Sbjct: 176 VIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIM 235
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST 498
+M + ++ N+ V + +++ + D A +L EM+ +
Sbjct: 236 SEMPRKHIMPNVVTYSTVIDGYAKAG--------------RLDEALNLFNEMKFASIGLD 281
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG 558
N+ + + K +AL + + M+ I+ T+ L+ G+ Y ++ ++
Sbjct: 282 RVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFE 341
Query: 559 DIK-RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++K I +L Y TL+ + +GG ++ MEV KK + D ++Y +
Sbjct: 342 EMKAERIFPNLLT-----YSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSA 392
>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
Length = 826
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 78/213 (36%), Gaps = 26/213 (12%)
Query: 339 KLLHSNRAM-----AKLINGYKKHGKNSELSWLL-LSIKK--EHHSFGESTLCSDVIDAL 390
++LH N ++ A L++G+ +HGK E L L+I K + G + + I
Sbjct: 475 EMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGYNAM----IKGY 530
Query: 391 IQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
+ G + A + M+ H D TY +++ Y K A L QM K N+
Sbjct: 531 CKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNV 590
Query: 451 SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFC 510
+ F D S AE +EMR + I FC
Sbjct: 591 VTYTSLINGFCRTGDSSR--------------AEKTFEEMRSSGLKPNVVTYTILIGCFC 636
Query: 511 KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
K I A + M + P TF YL+ G
Sbjct: 637 KEGKISKACSFFELMLLNRCIPNDVTFNYLING 669
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 105/263 (39%), Gaps = 21/263 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+ Y K GK L + + ++ H + ++ L+ G ++ A + D M
Sbjct: 386 LIHVYCKQGKCLRAFDLFIGMTEKGHPL-DLVAYGALVHGLVAAGEVDVALTVRDKMVER 444
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D+ Y L+ K A+ LL +M L QNLS + VS A+
Sbjct: 445 GVLPDANVYNVLMNGLCKKGRLSAAKLLLVEM----LHQNLSLDAFVS----------AT 490
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D K D A+ L + + + N+ I +CK M+ DAL +RM++
Sbjct: 491 LVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGD 550
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGY 588
P T+ ++ G+ + L+G +K+ + V+ Y +L+ F + G
Sbjct: 551 HSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVT-----YTSLINGFCRTGD 605
Query: 589 FERVMEVIGYMKKQNMYVDKLMY 611
R + M+ + + + Y
Sbjct: 606 SSRAEKTFEEMRSSGLKPNVVTY 628
>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 16/208 (7%)
Query: 337 NGKLLHSNRAM-AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF 395
N K +N A+ LI+ Y K+G E L +K E ++ S +++ L + G
Sbjct: 350 NQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFE-PDAVTYSVLVNGLCKSGR 408
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
L+ ++ D G +++ Y SL+ K +AE L ++M + ++ C
Sbjct: 409 LDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYC--- 465
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
++ + D A K D A +L M EE T+Y I K
Sbjct: 466 ----YNAIIDALAKH-------GKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKN 514
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYG 543
+A+K + +M + I PTV +F L G
Sbjct: 515 EEAIKFWDKMIDKGITPTVASFRALAIG 542
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 489 EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548
E+++ L T NS I F ++ + L ++RRM+E I P++ T+ +LV G +
Sbjct: 173 ELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSM 232
Query: 549 MYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDK 608
++ ++ G + Y ++ + + G ++ ME M+ +N+ DK
Sbjct: 233 FIESAEKVF----EVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDK 288
Query: 609 LMY 611
+ Y
Sbjct: 289 ITY 291
Score = 38.9 bits (89), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 64/316 (20%), Positives = 122/316 (38%), Gaps = 28/316 (8%)
Query: 329 KQELVLF--RNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDV 386
K LV F ++ LL + A LI + G EL W+ +K+ T + +
Sbjct: 166 KIRLVFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTY-NFL 224
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR---- 442
++ L+ F+E+A + + M+ D+ TY ++ Y K ++A + M
Sbjct: 225 VNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNV 284
Query: 443 -----------KSCLVQN-----LSCEMVVSERFSEVADKSASFTDTSSLMDKSDL-AES 485
++C + LS + + ER E+ S S + + A +
Sbjct: 285 KPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYA 344
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
+ + M ++ + + + I + K + +A++++ RM+ P T+ LV G
Sbjct: 345 VFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLC 404
Query: 546 SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMY 605
D L+ D RN GV A++ Y +L+ + G E + M ++
Sbjct: 405 KSGRLDDGMELF-DFCRN--KGV-AINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCA 460
Query: 606 VDKLMYKSEFLKHHKH 621
D Y + KH
Sbjct: 461 RDSYCYNAIIDALAKH 476
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 126/322 (39%), Gaps = 61/322 (18%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILD 404
+ LI+G+ + G E I KE + G ++I L +LG + A IL
Sbjct: 352 STLIDGFMRQGNADEA----FKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILK 407
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS---------CEMV 455
M G+ D+ TY ++ + + EA LL +MRK + N+ C++
Sbjct: 408 QMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIG 467
Query: 456 VSERFSE-----VAD--KSASFTDTSSLMDKS-----DLAESLIQEMREEAALSTIYKLN 503
SER S +AD K +F + LA +++M E +Y N
Sbjct: 468 ESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYN 527
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS----------------- 546
S I + +A++ Y M E +P T+ L++G+S
Sbjct: 528 SLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNS 587
Query: 547 ------------LEMY---RDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFER 591
LE Y ++ + +K +E G++ +R LY ++ N G+ +
Sbjct: 588 GLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNR-LYGIVIHNLSSSGHMQA 646
Query: 592 VMEVIGYMKKQNMYVDKLMYKS 613
+ V+ ++K + D L+Y S
Sbjct: 647 AVSVLSVIEKNGLVPDSLIYGS 668
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 15/199 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
A+++ GY K ++S L S+ E ++ L VI L G ++AA +L +E
Sbjct: 597 AQILEGYFKSDNLEKVSSTLKSML-EKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIE 655
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G DS Y SL++ + K +A LL +M K + +SC + + F + D S
Sbjct: 656 KNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDIS 715
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ +S++ K L + + + I +CK I DA+ +Y M
Sbjct: 716 HARNIFNSIICKG-LPPNCVT-------------YTTLIDGYCKAGDIRDAIDLYNEMLT 761
Query: 528 MKIRPTVETFYYLVYGHSS 546
+ P + L G S+
Sbjct: 762 EGVAPDAFVYSVLAAGCSN 780
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 17/211 (8%)
Query: 333 VLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ 392
V+ +NG L+ + LI+G+ K + LL + K+ G S + +ID +
Sbjct: 653 VIEKNG-LVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCY-NALIDGFCK 710
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
+ A +I + + G P + TY +L+ Y K R+A L +M L + ++
Sbjct: 711 SDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEM----LTEGVAP 766
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
+ V +S +A A +++ L + E +I + I N+ ++ FCK
Sbjct: 767 DAFV---YSVLA---AGCSNSGDLQQALFITEEMIAR-----GYAIISSFNTLVHGFCKR 815
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ + +K M + I P++ T +V G
Sbjct: 816 GKLQETVKFLHVMMDKDIVPSLLTVENIVIG 846
>gi|410110083|gb|AFV61121.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
cujabensis]
Length = 359
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
G+ L S++I+ +L A I ++ +G D Y +++ + K K+FREA +L
Sbjct: 2 GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSL 61
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
+ +M+ ++ N + + + E + F + A S+ EMRE L
Sbjct: 62 ISEMKTXGVMPNTTSYSTLLTMYVE----NKKFLE----------ALSVFSEMREIKCLL 107
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ N I + + M +A K++ M++M I P V ++ L+ + E++ + L+
Sbjct: 108 DLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 167
Query: 558 GDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++R NIE V+ Y ++++ + + E+ +I M+ + + + + Y +
Sbjct: 168 RLMQRKNIEQNVVT-----YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYST 219
>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
Length = 544
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 97/212 (45%), Gaps = 22/212 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ VIDA+ + G + A ++L M +G P ++ T+ +++ A+ K + + QMR+
Sbjct: 289 TAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQ 348
Query: 444 SCLVQNLSCEM-VVSERFSEVADKSASFTDTSSLMDKSDL--AESLIQEMREEAALSTIY 500
L CE +++ F +T +S+L A ++ M + + +
Sbjct: 349 ------LGCEPDIITYNF---------LMETHCGKGQSNLDAAMKMLTRMIAKGCIPDCH 393
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
N + + A K+Y RMQE++ +P V T Y L+ +LE D+ + I
Sbjct: 394 TFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVT-YNLLMRLFNLEKSMDMVL---RI 449
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
KR++++ + + + Y L+ F G ++R
Sbjct: 450 KRDMDAQGVEPNVNTYAALIEAFCGRGNWKRA 481
>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/276 (19%), Positives = 107/276 (38%), Gaps = 28/276 (10%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
A +I+G+ K G+ + L + ++ T + +IDAL + ++ A +L
Sbjct: 267 AYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTY-NLIIDALCKARAMDKAELVLRQ 325
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS-CEMVVSERFSEVA 464
M G D+ TY ++ Y + +EA + ++M+ L+ N+ C ++
Sbjct: 326 MTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGR 385
Query: 465 DKSAS--FTDTSSLMDKSDLAE------------------SLIQEMREEAALSTIYKLNS 504
K A+ F ++ K D+ L M+ + N
Sbjct: 386 SKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNI 445
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRN 563
I+ + K M+ DA+ I+ MQ+ + P V T+ ++ S + D + + R
Sbjct: 446 LIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARG 505
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
I+ +Y +++ F G + E++ M
Sbjct: 506 IQPNTA-----VYHSIIQGFCMHGGLVKAKELVSEM 536
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 88/448 (19%), Positives = 175/448 (39%), Gaps = 51/448 (11%)
Query: 166 KSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMN 225
K GA P+ + +N V+H + G + K + M++ GV D ++ I +
Sbjct: 256 KEGGA--CSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPD---VVTYNLIIDAL 310
Query: 226 CQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPN 285
C+ + K + + Q++T A Y ++ + + A ++ M + R +PN
Sbjct: 311 CKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKM-KSRGLIPN 369
Query: 286 PKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEK-DSILKMEGKQELVLFRNGKLLHSN 344
I I + L K E E DS+ K ++V +
Sbjct: 370 ------------IVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSY--------- 408
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
L++GY G +++ L S+K + + + + +I A + G ++ A I
Sbjct: 409 ---CTLLHGYASEGWFADMIGLFNSMKSNGIA-ADCRVFNILIHAYAKRGMVDDAMLIFT 464
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
+M+ G D TY ++++A+ ++ +A QM + N + + +
Sbjct: 465 EMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQ------ 518
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
F L+ +L +I + I NS I CK + DA I+
Sbjct: 519 ----GFCMHGGLVKAKELVSEMINK---GIPRPDIVFFNSVINSLCKDGRVMDAHDIFDL 571
Query: 525 MQEMKIRPTVETFYYLVYGHSSL-EMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNF 583
+ ++ RP V TF L+ G+ + +M + IL +E+ ++ Y TLL +
Sbjct: 572 VTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVT-----YSTLLDGY 626
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ G + + M+++ + + + Y
Sbjct: 627 FKNGRINDGLTLFREMQRKGVKPNTVTY 654
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/251 (19%), Positives = 99/251 (39%), Gaps = 29/251 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-R 442
+ +ID +G ++ A ILD ME+ G D TY +LL Y+K + L ++M R
Sbjct: 585 TSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQR 644
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
K ++ ++++ F ++ A EM E T+
Sbjct: 645 KGVKPNTVTYGIMLAGLFRA---------------GRTVAARKKFHEMIESGTTVTVSIY 689
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
+ C+ +A+ +++++ M ++ ++ ++ ++ + L+ I
Sbjct: 690 GIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATIS- 748
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ---------NMYVDKLMYKS 613
SG+L + Y +++N L+ G E + M+K N + L+ K
Sbjct: 749 --ASGLLP-NESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKG 805
Query: 614 EFLKHHKHLYR 624
E K +L +
Sbjct: 806 EIAKAGNYLSK 816
>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
Length = 687
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 119/291 (40%), Gaps = 22/291 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+GY K + LL E ++T + +I +G L AA D+L +M +
Sbjct: 401 LIDGYCG-AKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISS 459
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D T +LL ++A + K M+KS ++ S F+ V +
Sbjct: 460 GLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKS------KKDLDASHPFNGVEPDVQT 513
Query: 470 FTD-TSSLMDKSDL--AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ S L+++ AE L +EM + +S I CK + +A +++ M
Sbjct: 514 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMG 573
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
P V TF L+ G+ D L+ ++ R G++A + Y TL+ F +
Sbjct: 574 SKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRR---GIVA-NAITYITLICGFRKV 629
Query: 587 GYFERVMEVIGYMKKQNMYVDKL--------MYKSEFLKHHKHLYRRLKVS 629
G +++ M +Y D + ++ E LK + +L++S
Sbjct: 630 GNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQMS 680
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 103/260 (39%), Gaps = 18/260 (6%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+++G K G LL +++ H + S +ID+L + G A ++ +M+
Sbjct: 223 GTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY S++ + + +AE LL++M L + +S ++V K
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM----LERKISPDVVTYNALINAFVKE 338
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
F + AE L EM + +S I FCK + A ++ M
Sbjct: 339 GKFFE----------AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
P + TF L+ G+ + D L ++ E+G++A Y TL+ F G
Sbjct: 389 KGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT---ETGLVA-DTTTYNTLIHGFYLVG 444
Query: 588 YFERVMEVIGYMKKQNMYVD 607
++++ M + D
Sbjct: 445 DLNAALDLLQEMISSGLCPD 464
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +++ L + G + A +LD M G TY +++ K A LL++M +
Sbjct: 188 TTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEE 247
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
V ++ +V+ + K +D A++L EM+E+ ++ N
Sbjct: 248 ---VSHIIPNVVIYSAIIDSLCKDGRHSD----------AQNLFTEMQEKGIFPDLFTYN 294
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
S I FC DA ++ + M E KI P V T+ L+
Sbjct: 295 SMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALI 332
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
M++ DL SL Q+M + IY N I FC + AL + ++ ++ + P V T
Sbjct: 92 MERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVT 151
Query: 537 FYYLVYG 543
F L++G
Sbjct: 152 FTTLLHG 158
>gi|410110119|gb|AFV61139.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
javanica]
Length = 379
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 74/163 (45%), Gaps = 18/163 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK-S 444
+I+ + A ++ +M+ AG ++++Y LLT Y + K F EA ++ +MR+
Sbjct: 31 MINVFGKAKLFREARSLIGEMKTAGXMPNTSSYSXLLTMYVENKKFLEALSVFSEMREIK 90
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
CL+ +C +++ D + + A+ L MR+ + N+
Sbjct: 91 CLLDLTTCNIMI---------------DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 135
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF--YYLVYGHS 545
+ + ++ G+A+ ++R MQ I V T+ ++YG +
Sbjct: 136 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKT 178
>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
Length = 426
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 24/221 (10%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSF-GESTLCSDVIDALIQLGFLEAAHDILD 404
++ LING+ + N + L K E F + + + +ID ++G + A ++ D
Sbjct: 82 TVSSLINGFCQG--NRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFD 139
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-----SCEMVVSE- 458
ME G D+ TY SL+ + +A L++ M +V N+ ++ V E
Sbjct: 140 RMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEG 199
Query: 459 RFSEV-----------ADKSA----SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+FSE D S + + + D A+ ++ M + L + N
Sbjct: 200 KFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYN 259
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ I FCK K + + K++R M + + T+ ++ G+
Sbjct: 260 TLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGY 300
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 95/239 (39%), Gaps = 28/239 (11%)
Query: 350 LINGYKKHGKNSELSWLLLSIKK---EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+I+ + K GK SE L + + + F ++L I+ L G ++ A +LD M
Sbjct: 191 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSL----INGLCMHGRVDEAKQMLDLM 246
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
G D TY +L+ + K K E L ++M + LV + + + + +
Sbjct: 247 VTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAG-- 304
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ D A+ + M + T L +Y C + AL ++ MQ
Sbjct: 305 ------------RPDAAQEIFSRMDSRPNIRTYSIL---LYGLCMNWRVEKALVLFENMQ 349
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ 585
+ +I + T+ +++G + D W D+ R++ L Y T++ F +
Sbjct: 350 KSEIELDITTYNIVIHGMCKIGNVED---AW-DLFRSLSCKGLKPDVVSYTTMISGFCR 404
>gi|226490900|ref|NP_001141371.1| uncharacterized protein LOC100273462 [Zea mays]
gi|194704218|gb|ACF86193.1| unknown [Zea mays]
gi|414880165|tpg|DAA57296.1| TPA: hypothetical protein ZEAMMB73_527047 [Zea mays]
Length = 393
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/200 (19%), Positives = 87/200 (43%), Gaps = 14/200 (7%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
S R++ LI G ++E + + + H + + +I + + G + + + +
Sbjct: 135 STRSLNALIFACIVSGNHTEAARVFQTFPDAHGVKPNTETFNAIIKSFAESGTIRSFYSV 194
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462
D+M G +S T+ + L +YK + F + + +L+ M+K+ ++L V + +
Sbjct: 195 FDEMCKKGLKPNSITFTTALAGFYKEEKFDDIKKVLELMKKNGCGESLPVYNVRVQSLCK 254
Query: 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
+ +S A +L+ EM ++ N IY FCK + +A ++Y
Sbjct: 255 --------------LGRSGEARALVDEMMKKGTKPNWVTYNHLIYGFCKEGDLEEAKRLY 300
Query: 523 RRMQEMKIRPTVETFYYLVY 542
+ M + + ++ L+Y
Sbjct: 301 KEMGRKGLVGDSDFYFMLIY 320
>gi|410110147|gb|AFV61153.1| pentatricopeptide repeat-containing protein 123, partial [Phyla
nodiflora]
Length = 419
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
G+ L S++I+ +L A I ++ +G D Y +++ + K K+FREA +L
Sbjct: 27 GDLVLXSNLIELSRKLCDYSKAISIFSRLKXSGXXPDLXAYNAMINVFGKAKLFREARSL 86
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
+ +M+ + ++ + + + E + F + A S+ EMRE L
Sbjct: 87 IXEMKTAGVMPXTTSYSTLLTMYVE----NXKFLE----------ALSVFSEMREXKCLX 132
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ N I + + M +A K++ M++M I P V ++ L+ + E++ + L+
Sbjct: 133 DLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 192
Query: 558 GDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++R NIE V+ Y ++++ + + E+ +I M+ + + + + Y +
Sbjct: 193 RLMQRKNIEQNVVT-----YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYST 244
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 111/267 (41%), Gaps = 14/267 (5%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+GY + + + LL + E ++T + +I +G L AA D+ M +
Sbjct: 395 LIDGYCGAKRIDDGTELLHEMT-ETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISS 453
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D T +LL ++A + K M+KS + ++ S F+ V +
Sbjct: 454 GVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKM------DLDASRPFNGVEPDVQT 507
Query: 470 FTD-TSSLMDKSDL--AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ S L+++ AE L +EM + +S I CK + +A +++ M
Sbjct: 508 YNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMG 567
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
P V TF LV G+ D L+ ++ R G++A + Y TL+ F +
Sbjct: 568 SKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRR---GIVADAI-TYITLIHGFRKV 623
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKS 613
G +++ M +Y D + +S
Sbjct: 624 GNINGALDIFQEMISSGVYPDTITIRS 650
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 94/236 (39%), Gaps = 18/236 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+++G K G LL +++ H + S +ID L + G AH++ +M+
Sbjct: 217 GTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQ 276
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY ++ + + EA+ LL++M L + ++ +V K
Sbjct: 277 EKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEM----LERKINPNVVTYSALINAYVKE 332
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
F + AE L EM + NS I FCK + A ++ M
Sbjct: 333 RKFFE----------AEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMAT 382
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNF 583
P V TF L+ G+ + D T L ++ E+G++A Y TL+ F
Sbjct: 383 KGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMT---ETGLVA-DTTTYNTLIHGF 434
>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
Length = 778
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/279 (19%), Positives = 122/279 (43%), Gaps = 33/279 (11%)
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
L++ +++ ++ + ++DAL + G L A D+L DM+ G + TY L+ Y
Sbjct: 230 FLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYC 289
Query: 427 KVKMFREAEALLKQMRK----------SCLVQNLSCEMVVSERF---------SEVADKS 467
K+ +EA +++ M + + L+ L E + E F + D
Sbjct: 290 KMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVV 349
Query: 468 ASFTDTSSLMDKSDLAES--LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+ T + ++ S ++E+ L++EM E+ N + ++CK + DA +M
Sbjct: 350 SYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKM 409
Query: 526 QEMKIRPTVETFYYLVYGHSSL----EMYRDITILWGDIKRNIESGVLAVSRDLYETLLL 581
+E P T+ L+ G+ E +R + + ++N++ + ++ T+L
Sbjct: 410 EESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMG---RKNMKMDSVTLN-----TILR 461
Query: 582 NFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
+ E +++ +K+ ++D++ Y + + + K
Sbjct: 462 TLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFK 500
>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 892
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/223 (18%), Positives = 90/223 (40%), Gaps = 18/223 (8%)
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL 446
I L ++G A ++ ++ P+++ + +++ + + EA + K+M+ S +
Sbjct: 252 IKGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGI 311
Query: 447 VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506
+ ++ ++ + F + D A + +EMR L IY + I
Sbjct: 312 LPDVYSYSILIDGFCRKG--------------RVDQASEVFKEMRNSGILPNIYSYSILI 357
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566
FCK + AL+++ M+ I P V ++ L+ G W ++ N
Sbjct: 358 DGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSN--- 414
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKL 609
+ S Y +L+ + + F ++ M+K M+ D +
Sbjct: 415 -NFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTI 456
>gi|255661050|gb|ACU25694.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 429
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + +NS W S+ + + GE + D+++ + + G L
Sbjct: 224 SSPYMDMLANKFTSYSQNS---WKPFSLARGVRVTAKGEGSFDLDMVNTYLSIFLAKGKL 280
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F+EA ++L + ++ +++ V+
Sbjct: 281 SVACKLFEIFTNMGVDPASYTYNSIMSSFVKRGYFKEAWSVLHALGETVYPADIATYNVI 340
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 341 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 386
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS +D
Sbjct: 387 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGQLKD 422
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREEAAYTMFLDLKRKGNNFVDGISYSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + A L+K +R LV +L
Sbjct: 125 GFVVDLVTVTSLLITLYRRGHWDWAGKLMKHIRDGNLVPDL 165
>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
Length = 847
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 28/231 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++D+ + G ++ D+L +M+ G + TY L+ K F +A+ L+ +M K+
Sbjct: 546 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 605
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTS---SLMDKSDLAE--SLIQEMREEAALSTIY 500
L K +++T +K LAE SL +EM + A T+
Sbjct: 606 L-------------------KVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGASPTVA 646
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
NS IY CK + DA++ M + P V ++ L+YG+ L +L+ ++
Sbjct: 647 TYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDEL 706
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ S L + Y TLL + G E ++ M + + D + Y
Sbjct: 707 R----SIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTY 753
>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
Length = 638
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 106/249 (42%), Gaps = 23/249 (9%)
Query: 358 GKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTT 417
G+ ++ L + E H F ++ S +I A +LG ++A +L++M+ G +
Sbjct: 208 GQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKI 267
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477
Y L+T ++K+ A +L ++MR ++ ++T+ +
Sbjct: 268 YTMLITLFFKLDDVHGALSLFEEMRHQYCRPDV-----------------FTYTELIRGL 310
Query: 478 DKS---DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
K+ D A EM+ E +N+ I F K + DA+K+++ M ++ P+V
Sbjct: 311 GKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSV 370
Query: 535 ETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVME 594
T+ ++ + W +R ESG+ + S Y L+ F + E+ M
Sbjct: 371 VTYNTIIKALFESKSRASEVPSW--FERMKESGI-SPSSFTYSILIDGFCKTNRMEKAMM 427
Query: 595 VIGYMKKQN 603
++ M ++
Sbjct: 428 LLEEMDEKG 436
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 32/237 (13%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID + +E A +L++M+ G P Y SL+ A K K + A L +++++
Sbjct: 410 SILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE 469
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+C + V+ + K+ D ++ D EM + +Y N
Sbjct: 470 NCGSSSARVYAVMIKHLG----KAGRLDDAINMFD----------EMNKLGCAPDVYAYN 515
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITIL 556
+ + + M+ +AL RRMQE P + ++ ++ G H ++EM ++
Sbjct: 516 ALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMK-- 573
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + V++ Y T+L G FE +++ M D + Y S
Sbjct: 574 ----QSTVRPDVVS-----YNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSS 621
>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
Length = 602
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 20/198 (10%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
A L +GY + G+ + ++ + + +++ + L I L + G + A +LDD
Sbjct: 137 AYGALTDGYCRAGRLGDARRVVGGMPVQPNAYTYNPL----IHTLCERGQVRDALSVLDD 192
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVSERFSEVA 464
M G D TY LL A K + +R+A L+ MR + C N++ ++ +
Sbjct: 193 MLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVT--------YNVLM 244
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
D D D A L++ + + N+ + C + GDA ++
Sbjct: 245 DGMCGEGDV-------DDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTE 297
Query: 525 MQEMKIRPTVETFYYLVY 542
M P TF ++Y
Sbjct: 298 MLRENCPPNEATFNVVIY 315
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/276 (19%), Positives = 106/276 (38%), Gaps = 45/276 (16%)
Query: 366 LLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY 425
L+ + +E+ E+T + VI +L + G L+ A +L+ M G + TY +++
Sbjct: 294 LVTEMLRENCPPNEATF-NVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGL 352
Query: 426 YKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES 485
+ + A LL +M+ ++V + +A + D LMD
Sbjct: 353 CEQRNVDGAMGLLSKMKS----YGCKPDIVTYNTLLKGLCSAAQWVDAEELMDN------ 402
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-- 543
M + L N+ I F C+ ++ DA++++++M + P T+ ++ G
Sbjct: 403 ----MTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLA 458
Query: 544 -----HSSLEMYR----------------------DITILWG-DIKRNIESGVLAVSRDL 575
+LE++ D TI R ++ ++ L
Sbjct: 459 KATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVL 518
Query: 576 YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
Y +LL + G E ++++ YM D L Y
Sbjct: 519 YNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTY 554
>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 485
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 24/221 (10%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSF-GESTLCSDVIDALIQLGFLEAAHDILD 404
++ LING+ + N + L K E F + + + +ID ++G + A ++ D
Sbjct: 141 TVSSLINGFCQG--NRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFD 198
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-----SCEMVVSE- 458
ME G D+ TY SL+ + +A L++ M +V N+ ++ V E
Sbjct: 199 RMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEG 258
Query: 459 RFSEV-----------ADKSA----SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+FSE D S + + + D A+ ++ M + L + N
Sbjct: 259 KFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYN 318
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ I FCK K + + K++R M + + T+ ++ G+
Sbjct: 319 TLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGY 359
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 80/202 (39%), Gaps = 21/202 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I+ L G ++ A +LD M G D TY +L+ + K K E L ++M +
Sbjct: 283 NSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQ 342
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
LV + + + + + + D A+ + M + T L
Sbjct: 343 RGLVGDTITYNTIIQGYFQAG--------------RPDAAQEIFSRMDSRPNIRTYSIL- 387
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+Y C + AL ++ MQ+ +I + T+ +++G + D W D+ R+
Sbjct: 388 --LYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVED---AW-DLFRS 441
Query: 564 IESGVLAVSRDLYETLLLNFLQ 585
+ L Y T++ F +
Sbjct: 442 LSCKGLKPDVVSYTTMISGFCR 463
>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
Length = 472
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 100/248 (40%), Gaps = 39/248 (15%)
Query: 380 STLCSD-------VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
T+CS VID + G + A D+ +M G P D TY S++ A K +
Sbjct: 178 GTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMD 237
Query: 433 EAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491
+AEA L+QM K L N + ++ ++ T + A + +EMR
Sbjct: 238 KAEAFLRQMVNKRVLPNNWTYNNLIY-----------GYSSTGQWKE----AVRVFKEMR 282
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYR 551
+ L + L+ + CK I +A ++ M P V ++ ++ G+++
Sbjct: 283 RHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLV 342
Query: 552 DITILW----GDIKRNIESGVLAVSRDLY--ETLLLNFLQGGYFERVMEVIGYMKKQNMY 605
D+T L+ GD ++ D Y + + G ++ M + M+ +
Sbjct: 343 DMTDLFDLMLGD----------GIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVK 392
Query: 606 VDKLMYKS 613
D + Y++
Sbjct: 393 PDVVTYRT 400
>gi|356541064|ref|XP_003539003.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Glycine max]
Length = 703
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 111/265 (41%), Gaps = 28/265 (10%)
Query: 355 KKHGKNSELSWLLLS-IKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413
+K G +++ +W + + +GE L + +I + G + A IL ++E G
Sbjct: 306 RKLGHSAKDAWQFFEKMNGKGVKWGEEVLGA-LIKSFCVEGLMSEALIILSELEKKGVSS 364
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS-----EVADK-- 466
++ Y +L+ AY K EAE L +M+ + + ++ +S E+ +K
Sbjct: 365 NTIVYNTLMDAYCKSNRVEEAEGLFVEMKTKGIKPTEATFNILMYAYSRKMQPEIVEKLM 424
Query: 467 -----------SASFTDTSSLMDK----SDLAESLIQEMREEAALSTIYKLNSSIYFFCK 511
+ S+T S K SD+A +M+++ T + + I+ +
Sbjct: 425 AEMQETGLKPNAKSYTCIISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSV 484
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV 571
A + MQ I+P++ET+ L+ + + +W ++R G
Sbjct: 485 SGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRREKVEG---- 540
Query: 572 SRDLYETLLLNFLQGGYFERVMEVI 596
+R + TL+ F + GY++ +VI
Sbjct: 541 TRVTFNTLVDGFAKHGYYKEARDVI 565
>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
Length = 691
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 119/299 (39%), Gaps = 42/299 (14%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID I+ G LEA + D M G ++ TY LL+ + E ALL +M
Sbjct: 241 MIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQK 300
Query: 446 LVQNLSCEMVVSERFSEVADKSA-------------SFTD-TSSLM-------DKSDLAE 484
+V + ++ + S D A + D T S++ K +AE
Sbjct: 301 MVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAE 360
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
++Q + + T N+ I +C+ + A + +M+ I+P T+ L+ G
Sbjct: 361 EVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGL 420
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
E + L +++ N GV + + + TL+ + + G E+ V+ M++ +
Sbjct: 421 CKAERITNAQDLLMEMQDN---GV-NPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 476
Query: 605 YVDKLMYKS---EFLKH--------------HKHLYRRLKVSNARTEAQSKRLVNVQAF 646
+ + Y S F K+ HK + +V NA +A + N QAF
Sbjct: 477 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAF 535
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 88/394 (22%), Positives = 158/394 (40%), Gaps = 58/394 (14%)
Query: 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGV-VADAHSI-IILAQIHEMNCQRDEL 231
+PDT +N + ACV G + ++ M + G +A S +++A + D +
Sbjct: 161 RPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAV 220
Query: 232 KKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQD 291
+ F ++ P +H Y +++ H K D++A R R+ + L+ +
Sbjct: 221 EVFDEMTERAVLP--NHIT--YNTMIDGHIKGGDLEAG-------FRLRDQMVCHGLKPN 269
Query: 292 AQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKM--EGKQELVLF----RNGKLLHSNR 345
A ++ G R G ++ LL++ + KM +G +LF RNG ++
Sbjct: 270 AITYNVLLSGL--CRAG-RMGETSALLDEMASQKMVPDGFTYSILFDGLSRNG----DSK 322
Query: 346 AMAKLINGYKKHG---KNSELSWLLLSIKKEHH-SFGESTLCSDV--------------I 387
AM L Y K+G + S LL + K+ S E L S V I
Sbjct: 323 AMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLI 382
Query: 388 DALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLV 447
+ Q G LE A M+ D TY +L+ K + A+ LL +M+ + +
Sbjct: 383 NGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVN 442
Query: 448 QNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIY 507
+ E F+ + D ++ T L +K + ++ EM+E + S +
Sbjct: 443 PTV-------ETFNTLID---AYGRTGQL-EKCFI---VLSEMQENGLKPNVVSYGSIVN 488
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
FCK I +A+ I M + P + + ++
Sbjct: 489 AFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAII 522
>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
Length = 524
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 108/252 (42%), Gaps = 29/252 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDM-ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
VI G ++AA +++ +M E G D TY +L++ + K+ +A + +M
Sbjct: 153 VIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTK 212
Query: 445 -----------------CLVQNLSCEMVVSERFSE--VADKSASFTDT--SSLMD-KSDL 482
C V L + E + +A A++ + MD ++
Sbjct: 213 GEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASD 272
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A ++++EM++ ++ N I +CK AL+++ M + +R T T+ L+Y
Sbjct: 273 AYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIY 332
Query: 543 GHSSLEMYRDITILWG-DIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
S ++ L+ +K+ I V+ +Y L+ + GG ER E++ M+K
Sbjct: 333 VFSRKGQVQETDRLFNVAVKKGIRPDVV-----MYNALINSHCTGGDMERAYEIMAEMEK 387
Query: 602 QNMYVDKLMYKS 613
+ + D + Y +
Sbjct: 388 KRIPPDDMTYNT 399
Score = 38.9 bits (89), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 85/200 (42%), Gaps = 21/200 (10%)
Query: 350 LINGYKKHGKNSELSWLL-LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
LI + + G+ E L +++KK + + + +I++ G +E A++I+ +ME
Sbjct: 330 LIYVFSRKGQVQETDRLFNVAVKKGIRP--DVVMYNALINSHCTGGDMERAYEIMAEMEK 387
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
P D TY +L+ + + EA L+ +M K + +L + +S
Sbjct: 388 KRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSM------ 441
Query: 469 SFTDTSSLMDKSDLAESL--IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
K D+ ++L EM ++ T+ N+ I CK + DA + + M
Sbjct: 442 ----------KGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMV 491
Query: 527 EMKIRPTVETFYYLVYGHSS 546
I P T+ L+ G ++
Sbjct: 492 AKGITPDDSTYISLIEGLTT 511
>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 653
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 16/208 (7%)
Query: 337 NGKLLHSNRAM-AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF 395
N K +N A+ LI+ Y K+G E L +K E ++ S +++ L + G
Sbjct: 352 NQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFE-PDAVTYSVLVNGLCKSGR 410
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
L+ ++ D G +++ Y SL+ K +AE L ++M + ++ C
Sbjct: 411 LDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYC--- 467
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
++ + D A K D A +L M EE T+Y I K
Sbjct: 468 ----YNAIIDALAKHG-------KIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKN 516
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYG 543
+A+K + +M + I PTV +F L G
Sbjct: 517 EEAIKFWDKMIDKGITPTVASFRALAIG 544
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 489 EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548
E+++ L T NS I F ++ + L ++RRM+E I P++ T+ +LV G +
Sbjct: 175 ELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSM 234
Query: 549 MYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDK 608
++ ++ G + Y ++ + + G ++ ME M+ +N+ DK
Sbjct: 235 FIESAEKVF----EVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDK 290
Query: 609 LMY 611
+ Y
Sbjct: 291 ITY 293
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 64/316 (20%), Positives = 122/316 (38%), Gaps = 28/316 (8%)
Query: 329 KQELVLF--RNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDV 386
K LV F ++ LL + A LI + G EL W+ +K+ T + +
Sbjct: 168 KIRLVFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTY-NFL 226
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR---- 442
++ L+ F+E+A + + M+ D+ TY ++ Y K ++A + M
Sbjct: 227 VNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNV 286
Query: 443 -----------KSCLVQN-----LSCEMVVSERFSEVADKSASFTDTSSLMDKSDL-AES 485
++C + LS + + ER E+ S S + + A +
Sbjct: 287 KPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYA 346
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
+ + M ++ + + + I + K + +A++++ RM+ P T+ LV G
Sbjct: 347 VFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLC 406
Query: 546 SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMY 605
D L+ D RN GV A++ Y +L+ + G E + M ++
Sbjct: 407 KSGRLDDGMELF-DFCRN--KGV-AINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCA 462
Query: 606 VDKLMYKSEFLKHHKH 621
D Y + KH
Sbjct: 463 RDSYCYNAIIDALAKH 478
>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
Length = 854
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 69/385 (17%), Positives = 153/385 (39%), Gaps = 48/385 (12%)
Query: 162 LSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQI 221
+S + NG +KPDT++FN +++A G+ + I E M ++G A + L +
Sbjct: 400 ISKVEKNG---LKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKG 456
Query: 222 HEMNCQRDELKKFKCYI--DQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRY 279
+ + +E + + D++ P ++ + I+ A ++ M Y
Sbjct: 457 YGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQR----KIEEAWNIVYKMQSY 512
Query: 280 REPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGK 339
P+ K Y IGS C + I+P +L + K
Sbjct: 513 GVK-PDVVTFNTLAKAY-ARIGS---TCTAEDMIIPRML------------------HNK 549
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
+ + R ++NGY + GK E +K E + + +I + + ++
Sbjct: 550 VKPNVRTCGTIVNGYCEEGKMEEALRFFYRMK-ELGVHPNLFVFNSLIKGFLNINDMDGV 608
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
+++D ME G D T+ +L+ A+ V + E + M + + ++ ++++
Sbjct: 609 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 668
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
++ + + AE ++ +MR+ + I +C + A+
Sbjct: 669 YARAGE--------------PEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAM 714
Query: 520 KIYRRMQEM-KIRPTVETFYYLVYG 543
++Y++M + + P + T+ L++G
Sbjct: 715 QVYKKMCGIVGLSPNLTTYETLIWG 739
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 28/196 (14%)
Query: 380 STLCSDV------IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE 433
T C DV ++ LI+ G + AH I + + GH TY +L+TA + K F
Sbjct: 336 GTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHS 395
Query: 434 AEALLKQMRKSCL----------------VQNLSCEMVVSERFSEVADKSASFTDTSSL- 476
+L+ ++ K+ L NL M + E+ E K + T + +
Sbjct: 396 LLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIK 455
Query: 477 ----MDKSDLAESLIQEM-REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR 531
+ K + + L+ M R+E N + +C + I +A I +MQ ++
Sbjct: 456 GYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVK 515
Query: 532 PTVETFYYLVYGHSSL 547
P V TF L ++ +
Sbjct: 516 PDVVTFNTLAKAYARI 531
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 111/271 (40%), Gaps = 35/271 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI GY K GK E S LL + ++ C+ ++ A +E A +I+ M+
Sbjct: 453 LIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSY 512
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAE-ALLKQMRKSCLVQNL-SCEMVVSERFSEVADKS 467
G D T+ +L AY ++ AE ++ +M + + N+ +C +V+ E
Sbjct: 513 GVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEE----- 567
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
K + A M+E ++ NS I F + ++ M+E
Sbjct: 568 ----------GKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEE 617
Query: 528 MKIRPTVETFYYLVYGHSSL-------EMYRDITILWGDIKRNIESGVLAVSRDLYETLL 580
++P V TF L+ SS+ E+Y D +L G I +I + + L
Sbjct: 618 FGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTD--MLEGGIDPDIHA---------FSILA 666
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ + G E+ +++ M+K + + ++Y
Sbjct: 667 KGYARAGEPEKAEQILNQMRKFGVRPNVVIY 697
>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g21222; AltName: Full=SNF1-like protein kinase AtC401
gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
Length = 831
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 69/385 (17%), Positives = 153/385 (39%), Gaps = 48/385 (12%)
Query: 162 LSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQI 221
+S + NG +KPDT++FN +++A G+ + I E M ++G A + L +
Sbjct: 377 ISKVEKNG---LKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKG 433
Query: 222 HEMNCQRDELKKFKCYI--DQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRY 279
+ + +E + + D++ P ++ + I+ A ++ M Y
Sbjct: 434 YGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQR----KIEEAWNIVYKMQSY 489
Query: 280 REPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGK 339
P+ K Y IGS C + I+P +L + K
Sbjct: 490 GVK-PDVVTFNTLAKAY-ARIGS---TCTAEDMIIPRML------------------HNK 526
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
+ + R ++NGY + GK E +K E + + +I + + ++
Sbjct: 527 VKPNVRTCGTIVNGYCEEGKMEEALRFFYRMK-ELGVHPNLFVFNSLIKGFLNINDMDGV 585
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
+++D ME G D T+ +L+ A+ V + E + M + + ++ ++++
Sbjct: 586 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 645
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
++ + + AE ++ +MR+ + I +C + A+
Sbjct: 646 YARAGE--------------PEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAM 691
Query: 520 KIYRRMQEM-KIRPTVETFYYLVYG 543
++Y++M + + P + T+ L++G
Sbjct: 692 QVYKKMCGIVGLSPNLTTYETLIWG 716
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 28/196 (14%)
Query: 380 STLCSDV------IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE 433
T C DV ++ LI+ G + AH I + + GH TY +L+TA + K F
Sbjct: 313 GTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHS 372
Query: 434 AEALLKQMRKSCL----------------VQNLSCEMVVSERFSEVADKSASFTDTSSL- 476
+L+ ++ K+ L NL M + E+ E K + T + +
Sbjct: 373 LLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIK 432
Query: 477 ----MDKSDLAESLIQEM-REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR 531
+ K + + L+ M R+E N + +C + I +A I +MQ ++
Sbjct: 433 GYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVK 492
Query: 532 PTVETFYYLVYGHSSL 547
P V TF L ++ +
Sbjct: 493 PDVVTFNTLAKAYARI 508
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 111/271 (40%), Gaps = 35/271 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI GY K GK E S LL + ++ C+ ++ A +E A +I+ M+
Sbjct: 430 LIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSY 489
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAE-ALLKQMRKSCLVQNL-SCEMVVSERFSEVADKS 467
G D T+ +L AY ++ AE ++ +M + + N+ +C +V+ E
Sbjct: 490 GVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEE----- 544
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
K + A M+E ++ NS I F + ++ M+E
Sbjct: 545 ----------GKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEE 594
Query: 528 MKIRPTVETFYYLVYGHSSL-------EMYRDITILWGDIKRNIESGVLAVSRDLYETLL 580
++P V TF L+ SS+ E+Y D +L G I +I + + L
Sbjct: 595 FGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTD--MLEGGIDPDIHA---------FSILA 643
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ + G E+ +++ M+K + + ++Y
Sbjct: 644 KGYARAGEPEKAEQILNQMRKFGVRPNVVIY 674
>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Vitis vinifera]
Length = 718
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 28/231 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++D+ + G ++ D+L +M+ G + TY L+ K F +A+ L+ +M K+
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 299
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTS---SLMDKSDLAE--SLIQEMREEAALSTIY 500
L K +++T +K LAE SL +EM + A T+
Sbjct: 300 L-------------------KVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVA 340
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
NS IY CK + DA++ M + P V ++ L+YG+ L +L+ ++
Sbjct: 341 TYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDEL 400
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ S L + Y TLL + G E ++ M + + D + Y
Sbjct: 401 R----SIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTY 447
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 21/185 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
V+D L +LG LE A ++L M G D TY S++ A+ + R+ + +M
Sbjct: 520 VVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKG 579
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLI--QEMREEAALSTIYKLN 503
L ++ V+ + K L + I EM+E+ L + N
Sbjct: 580 LTPSVVTYTVLIHGHA----------------GKGRLERAFIYFSEMQEKGILPNVITYN 623
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
S I CK + + A + M E I P ++ L+ + ++ +++ L+ K+
Sbjct: 624 SLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLY---KQM 680
Query: 564 IESGV 568
++ GV
Sbjct: 681 LDRGV 685
>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 947
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 118/289 (40%), Gaps = 33/289 (11%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
CS +++A + G++ A D + +M+ G ++ TY SL+ + AE +LK M
Sbjct: 221 CSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMG 280
Query: 443 KSCLVQN------------LSCEMVVSERFSEVADKSASFT----------DTSSLMDKS 480
+ +++N C++ +E+ ++S D + K
Sbjct: 281 ERGILRNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKM 340
Query: 481 DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
D A L EM ++ N+ I +CK + +A ++ RM + + P ++ L
Sbjct: 341 DDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTL 400
Query: 541 VYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
+ G + ++ ++ R I+S V+ + +LL + G FE + V M
Sbjct: 401 MDGFCREGLVTKAISVYNEMLRVGIQSNVVT-----HNSLLKGLCRVGAFEDALHVWHLM 455
Query: 600 KKQNMYVDKLMYKS--EFLKHHKHLYRRLKVSN---ARTEAQSKRLVNV 643
K+ + D++ Y + + L +R L + N AR +S N
Sbjct: 456 LKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNT 504
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 28/224 (12%)
Query: 334 LFRNGKLLHSNRAMAKLIN-------GY-----KKHGKNSELSWLLLSIKKEHHSFG--E 379
L+R G++ +N + K++N GY K N + + ++ + SF
Sbjct: 649 LYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIADTLDESSKSFSLPN 708
Query: 380 STLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK 439
S + + I L + G ++ A I + L G D+ TY +L+ Y +A +L
Sbjct: 709 SVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRD 768
Query: 440 QMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499
+M K L N+ + KS + D A+ L ++ + +
Sbjct: 769 EMLKRGLAPNI----ITYNALINGLCKSGNL----------DRAQKLFDKLHLKGLAPNV 814
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
N I +CK +AL + +M + I P++ T+ L+YG
Sbjct: 815 ISYNILIDGYCKNGNTREALDLRNKMLKEGISPSLITYSALIYG 858
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 21/182 (11%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM- 441
C+ + +L ++G L A + + + G DS TY ++ Y KV EA LL +M
Sbjct: 475 CNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMI 534
Query: 442 RKSC-----LVQNLSCEMVVSERFSE---VADKSASFTDTSSLMDKSDLAESLIQEMREE 493
R C +V +L + + R E + D+ + +++ + L L +E R +
Sbjct: 535 RNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQ 594
Query: 494 AAL----STIYK--------LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
A+ S I K N+ + FCK + ALK++ +M M +P V T+ ++
Sbjct: 595 KAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVI 654
Query: 542 YG 543
YG
Sbjct: 655 YG 656
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 21/179 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I L++ G +E A +LD ME G + TY + + + K +A ++M+
Sbjct: 408 LICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKG 467
Query: 446 LVQNL-SCE-----------------MVVSERFSEVADKSASFT---DTSSLMDKSDLAE 484
+V N+ +C M R + +A S ++ S + + D A
Sbjct: 468 IVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAV 527
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+L+ EM + +NS I K + +A +++ RM++MK+ PTV T+ L+ G
Sbjct: 528 NLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSG 586
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 15/192 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+IDAL G LE A ++ M+ GH D Y +LL + + QM
Sbjct: 303 LIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADG 362
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ ++ ++ + + D +F + MR++ L ++ N+
Sbjct: 363 YMPDVVTFTILVDVLCKARDFDEAF--------------ATFDVMRKQGILPNLHTYNTL 408
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV-YGHSSLEMYRDITILWGDIKRNI 564
I + I DALK+ M+ + ++PT T+ + Y S E + + + I
Sbjct: 409 ICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGI 468
Query: 565 ESGVLAVSRDLY 576
++A + LY
Sbjct: 469 VPNIVACNASLY 480
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 98/492 (19%), Positives = 184/492 (37%), Gaps = 88/492 (17%)
Query: 104 ARAQMPVPASMILRLMLGRENLPCS-----DLLLLVFVHM-VKTEIGTCLAS--NFLI-- 153
+R M P I ++ N+ S D+L VFV + + E C + NF
Sbjct: 193 SRMDMGFPVCNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLP 252
Query: 154 --QLCDVFLHLSAEKSNG-----------AELIKPDTMIFNLVLHACVRFGSSLKGQHIM 200
+ C+ LH ++ NG I P +N+++ + G + +
Sbjct: 253 KARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLF 312
Query: 201 ELMSQTGVVADA---HSII----ILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFY 253
M + G+ D +S+I + + E+ +E+K C D ++ Y
Sbjct: 313 VQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIIT----------Y 362
Query: 254 ESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQI 313
L++ + KF+ + A E +M + + KP +++ +
Sbjct: 363 NGLINCYCKFEKMPRAFEYFSEM------------KNNGLKPNVVTYST----------- 399
Query: 314 MPELLEKDSILKMEGKQELVL-FRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKK 372
+ + K+ + M+G +L + R LL + LI+ K G +E +W LL+
Sbjct: 400 LIDAFCKEGM--MQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTE-AWKLLNDML 456
Query: 373 EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
+ + ++D L + G + A ++ M G + Y +L+ Y K +
Sbjct: 457 QAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERME 516
Query: 433 EAEALLKQMRKSCLVQNL---------SC------------EMVVSERFSEVADKSASFT 471
+A +LKQM + + +L C E + S S S +
Sbjct: 517 DAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTII 576
Query: 472 DTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR 531
D KS A + QEM++ +TI I CK ++ A+ + RM + ++
Sbjct: 577 DAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQ 636
Query: 532 PTVETFYYLVYG 543
P V + L+ G
Sbjct: 637 PNVAVYTSLIDG 648
Score = 45.4 bits (106), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 107/254 (42%), Gaps = 25/254 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK-S 444
+ID L + G LE + + M G D TY SL+ Y KV E +L +M+
Sbjct: 295 MIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVG 354
Query: 445 CLVQNLSCEMVVS------------ERFSEVADKS--ASFTDTSSLMD---KSDLAESLI 487
C+ ++ +++ E FSE+ + + S+L+D K + + I
Sbjct: 355 CVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAI 414
Query: 488 Q---EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ +MR L + S I CK + +A K+ M + ++ + T+ L+ G
Sbjct: 415 KLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGL 474
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
I ++ R++ ++ ++ +Y L+ +++ E M+++ M + N+
Sbjct: 475 CKAGR----MIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNI 530
Query: 605 YVDKLMYKSEFLKH 618
D ++Y S H
Sbjct: 531 KPDLILYGSIIWGH 544
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 14/163 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +IDA + G ++ A + DM G + TY SL+ A K EA LL M +
Sbjct: 398 STLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQ 457
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ + N+ ++ + D +++ AE + + M ++
Sbjct: 458 AGVKLNIV-------TYTALLD---GLCKAGRMIE----AEEVFRSMLKDGISPNQQVYT 503
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546
+ ++ + K + + DA+KI ++M E I+P + + +++GH S
Sbjct: 504 ALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCS 546
>gi|255661082|gb|ACU25710.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 429
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHH--SFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + +NS W S+ + + GE + D+++ + + G L
Sbjct: 224 SSPYMDMLANKFTSYSQNS---WKPFSLARGVRVAAKGEDSFDLDMVNTYLCIFLAKGKL 280
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F+EA ++L M ++ +++ V+
Sbjct: 281 SVACKLFEIFTNMGVDPASYTYNSIMSSFVKKGYFKEAWSVLHAMGETVYPADIATYNVI 340
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 341 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 386
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS +D
Sbjct: 387 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLKD 422
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREEAAYTMFLDLKRKGNNFVDGITYSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL---SCEMVVSERFSEVADK 466
G +D T SLL Y+ + A L+K +R LV NL M S R + DK
Sbjct: 125 GFIVDLVTVTSLLITLYRRGQWDWAGKLMKHIRDGNLVPNLLKWQSAMERSMRAPQSKDK 184
Query: 467 SAS--FTDTSSLMD-------KSDLA 483
+ F + ++D KSDL+
Sbjct: 185 DFTPIFPSVNDIVDILNLRKTKSDLS 210
>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1429
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/249 (20%), Positives = 98/249 (39%), Gaps = 61/249 (24%)
Query: 392 QLGFLEAAHDILDDMELAGHPMDSTTYK-SLLTAYYKVKMFREAEALLKQMRKSC----- 445
++GF E AH ++D E+ G P D + +++ Y K+K++++AE+L+ +R+ C
Sbjct: 711 KMGFPETAHYLIDLAEIEGMPFDKISIDVAVIETYGKLKLWQKAESLVGNLRQRCTNVDR 770
Query: 446 -----LVQNLSCE-------------------------------MVVSERFSEVADKSAS 469
L+Q + ++V R E+ +
Sbjct: 771 KVWNALIQAYAASGCYEQARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQE 830
Query: 470 FTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNSSIYFFCKGKM 514
D + KS + A+ + Q M+ T++ I CKGK
Sbjct: 831 IQDMGFQISKSSILLILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKR 890
Query: 515 IGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD 574
+ D + M+E RP + + ++ ++ ++ +R ++ IK E G L D
Sbjct: 891 VRDVEAMVTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIK---EDG-LQPDED 946
Query: 575 LYETLLLNF 583
Y TL++ +
Sbjct: 947 TYNTLIVMY 955
Score = 38.9 bits (89), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 99/240 (41%), Gaps = 32/240 (13%)
Query: 409 AGHPMDSTT--YKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVSERFSEVAD 465
A +D+T Y +++ Y + F + + +L MR + C +S +++ R
Sbjct: 202 AESTVDNTVQVYNAMMGVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLINARL----- 256
Query: 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
K+ + T ++A L+ E+R I N+ I + + +A+K++ M
Sbjct: 257 KAGAMT--------PNVAIELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDM 308
Query: 526 QEMKIRPTVETFYYL--VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNF 583
+ +P + T+ + VYG + + + +ES Y +LL F
Sbjct: 309 EAHYCQPDLWTYNAMISVYGRCGFSGKAE------QLFKELESKGYFPDAVTYNSLLYAF 362
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMYKS---EFLKHHKH-----LYRRLKVSNARTEA 635
+ G ++V E+ M + D++ Y + + K +H LYR +K+S +A
Sbjct: 363 AREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDA 422
>gi|255661042|gb|ACU25690.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 429
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + +NS W S+ + + GE + D+++ + + G L
Sbjct: 224 SSPYMDMLANKFTSYSQNS---WKPFSLARGVRVTAKGEGSFDLDMVNTYLSIFLAKGKL 280
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F+EA ++L + ++ +++ V+
Sbjct: 281 SVACKLFEIFTNMGVDPASYTYNSIMSSFVKRGYFKEAWSVLHALGETVYPADIATYNVI 340
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 341 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 386
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS +D
Sbjct: 387 EANKLFEQMKASGINPDVVTYNTLIEVHSKXGRLKD 422
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREEAAYTMFLDLKRKGNNFVDGISYSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + A L+K +R LV +L
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWAGKLMKHIRDGNLVPDL 165
>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
Length = 570
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+++ L ++G LE A D+L + G D TY SL+ K K EA L K+M
Sbjct: 206 LLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRG 265
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
LV + C + + K A S+ + M + + + L++
Sbjct: 266 LVLDTVCYTALIRGLLQAG--------------KIPQASSVYKTMTSQGCVPDVVTLSTM 311
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
I CK IG A++I++ M+ + P + L++G
Sbjct: 312 IDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 349
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 73/194 (37%), Gaps = 15/194 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI G + GK + S + ++ + TL S +ID L + G + AA I ME
Sbjct: 276 LIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTL-STMIDGLCKAGRIGAAVRIFKSMEAR 334
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + Y +L+ K + A +L QM+K+ + ++ + + D A
Sbjct: 335 GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEA- 393
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
A + EM E +Y N + FCK A ++ M
Sbjct: 394 -------------ARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSH 440
Query: 530 IRPTVETFYYLVYG 543
P V T+ L+ G
Sbjct: 441 CSPNVVTYGTLISG 454
>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
Length = 1096
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 99/484 (20%), Positives = 186/484 (38%), Gaps = 62/484 (12%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
I PD FN++++ GS K ++M+ M ++G A +I+ + C++ K
Sbjct: 189 ICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGY---APTIVTYNTVLHWYCKKGRFK 245
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNP----KL 288
+D + + Y L+ + + I A G L+L R R PN L
Sbjct: 246 AAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRI-AKGYLLLRDMRKRMIHPNEVTYNTL 304
Query: 289 RQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILK---MEG--KQELVLF---RNGKL 340
+ I S L L + P + ++++ EG K+ L +F L
Sbjct: 305 INGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGL 364
Query: 341 LHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAH 400
S + L++G K+ + + +K+ G T + +ID L + GFL+ A
Sbjct: 365 TPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITY-TGMIDGLCKNGFLDEAV 423
Query: 401 DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERF 460
+L++M G D TY +L+ + KV F+ A+ ++ ++ + L N ++ S
Sbjct: 424 VLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPN---GIIYSTLI 480
Query: 461 SEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALK 520
L + + E++I E + N + CK + +A +
Sbjct: 481 YNCC-------RMGCLKEAIRIYEAMILEGHTRDH----FTFNVLVTSLCKAGKVAEAEE 529
Query: 521 IYRRMQEMKIRPTVETFYYLV--YGHS-----SLEMYRDIT--------ILWGDIKRNIE 565
R M I P +F L+ YG+S + ++ ++T +G + + +
Sbjct: 530 FMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLC 589
Query: 566 SG----------------VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKL 609
G AV +Y TLL + G + + + G M ++++ D
Sbjct: 590 KGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSY 649
Query: 610 MYKS 613
Y S
Sbjct: 650 TYTS 653
>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 377 FGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEA 436
F S CS +I L +L L+ A D+L +M + G P++ + LL Y+++ A +
Sbjct: 391 FPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYS 450
Query: 437 LLKQMRK----------SCLVQNLSCEMVVSERF------SEVADKSASFTDTS---SLM 477
L +M S + LS +V E + S+ +F S
Sbjct: 451 LWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFC 510
Query: 478 DKSDLAESLI--QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVE 535
+ L E+L+ +EM + L I+ N I CK + A ++R M + P +
Sbjct: 511 NSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIV 570
Query: 536 TFYYLVYGH 544
T+ L+ G+
Sbjct: 571 TYNTLIDGY 579
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 86/220 (39%), Gaps = 24/220 (10%)
Query: 350 LINGYKKHGKNSE-LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
LIN Y G+ + L W+ I ++ VI+A G + A ++ D M+
Sbjct: 190 LINAYCTRGQTFDALGWMRFMI--DNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKE 247
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE---RFSEVAD 465
AGH + Y +L+ Y K + +A L ++M+ + + + ++ R+ D
Sbjct: 248 AGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVAGHYRYGREED 307
Query: 466 KSASFTDTSSLMDKS------------------DLAESLIQEMREEAALSTIYKLNSSIY 507
+ D S S D A +++M E+ T+ NS I
Sbjct: 308 RDRLLRDLSQSGSLSISSLYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIA 367
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL 547
+ + + A K YR M + + P+ T L+ G S L
Sbjct: 368 AYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSLIMGLSKL 407
>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 831
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 117/294 (39%), Gaps = 44/294 (14%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDM 406
LIN Y K GK + L I E G S +ID +QLG A + +DM
Sbjct: 376 LINLYSKLGKMDKA----LQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDM 431
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD- 465
AG D TY L+ A+ K A LL +M L ++ + F ++ D
Sbjct: 432 SNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDL 491
Query: 466 ----------KSASFTDTSSLMD----------KSDLAESLIQEM------REEAALSTI 499
K A F +++ + + D A S+I EM E + +T+
Sbjct: 492 RMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTL 551
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD 559
+ + C G M G A K + R++E+ ++P V + L+ + + R + L
Sbjct: 552 IE-----GYACIGDM-GLAFKYFNRIKEVGLKPDVIAYASLL--KACCKAGRMQSTL--A 601
Query: 560 IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
I + + + ++ +Y LL + Q G +++ M+ + + D Y S
Sbjct: 602 ITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLTPDIHSYTS 655
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 108/254 (42%), Gaps = 41/254 (16%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAG-HPMDSTTYKSLLTAYYKV-------KMF-REAEA 436
++ L Q G ++ A I+D+M +AG HP + +Y +L+ Y + K F R E
Sbjct: 516 IMHGLAQAGQMDRAASIIDEMVVAGVHP-NERSYTTLIEGYACIGDMGLAFKYFNRIKEV 574
Query: 437 LLKQ--------MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD----KSDL-- 482
LK ++ C + + ++ + ++ + L+D + D+
Sbjct: 575 GLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYI-YNILLDGWAQRGDMWE 633
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK---IRPTVETFYY 539
A ++Q+MR E I+ S I CK GD LK +++MK ++P ++ +
Sbjct: 634 ASDIMQKMRHEGLTPDIHSYTSFINACCKA---GDMLKATETIEQMKQQGVQPNLQAYTT 690
Query: 540 LVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG------YFERVM 593
L++G +S I + ++K S + + LY ++ + L F+ V+
Sbjct: 691 LIHGWASASYPEKALICYDEMK----SAGMIPDKPLYHCIMTSLLSRAAVARETVFDGVL 746
Query: 594 EVIGYMKKQNMYVD 607
V M Q + VD
Sbjct: 747 RVTSEMVDQGICVD 760
>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Cucumis sativus]
Length = 728
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 103/250 (41%), Gaps = 26/250 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEA-LLKQMRKS 444
+I ++ +E A ++ D+M G DS TYK ++ Y + EA+ + + M +
Sbjct: 215 IILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERG 274
Query: 445 CLVQNLS--------CEMVVSERFSEVADKSASFTDTSSLMDKSDL------------AE 484
+V N + CE + R K + +L++ S + A
Sbjct: 275 FVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAF 334
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM-QEMKIRPTVETFYYLVYG 543
L++EM + +Y S I+ CK A +++ ++ + +P V T+ ++ G
Sbjct: 335 ELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISG 394
Query: 544 HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
+ E +L+ +K E G L + + Y TL+ + G F + E++ M +
Sbjct: 395 YCKEEKLSRAEMLFERMK---EQG-LVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEG 450
Query: 604 MYVDKLMYKS 613
+ + Y S
Sbjct: 451 FFPNTCTYNS 460
>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
Length = 671
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/302 (19%), Positives = 125/302 (41%), Gaps = 35/302 (11%)
Query: 338 GKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLE 397
G L ++ M ++ + + G+ E + ++L ++ H LC + + ++++G
Sbjct: 105 GSLPMAHEVMRGMVAAFGEAGRLPEAADMVLEMRS--HGL---PLCVETANWVLRVGLET 159
Query: 398 A----AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSC 452
A + D M AG D ++++L+ + E +ALL M R + N +C
Sbjct: 160 GSFVYARKVFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATC 219
Query: 453 EMVVSE-----RFSEVADKSASFTDTSSLMDKSDL---------------AESLIQEMRE 492
+VV RF +V++ +T + + + A +++EM
Sbjct: 220 TVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVG 279
Query: 493 EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM-QEMKIRPTVETFYYLVYGHSSLEMYR 551
+Y + I CK A +++ ++ + +P V T+ ++ G+
Sbjct: 280 RGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLA 339
Query: 552 DITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+L + R +E G L + + Y TL+ +GG F+R E++ MK++ + Y
Sbjct: 340 RAEML---LVRMVEQG-LKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTY 395
Query: 612 KS 613
+
Sbjct: 396 NA 397
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 15/162 (9%)
Query: 384 SDVIDALIQLGFLEAAHDI-LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
+ +ID L ++G+ E A + L ++ + + + TY ++ Y + AE LL +M
Sbjct: 290 TTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMV 349
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
+ L N + + K SF D A L+ +M++E L IY
Sbjct: 350 EQGLKPNTNTYTTLIGGHC----KGGSF----------DRAFELMNKMKQEGFLPNIYTY 395
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
N+ I FCK I +A K+ R ++ T+ L+ H
Sbjct: 396 NAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEH 437
>gi|357123699|ref|XP_003563545.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Brachypodium distachyon]
Length = 492
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 103/229 (44%), Gaps = 24/229 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++DA + G LE + +L +M+ G +D+ Y +L+ Y M+++A L+ +M
Sbjct: 164 LLDAYARAGRLEDSWWVLGEMKRRGIQLDTAGYSTLVRLYRDNGMWKKATDLIMEM---- 219
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
Q L E+ V + ++ + D +F L D A L ++MR E I N+
Sbjct: 220 --QELGVELDV-KIYNGLID---TFGKYGQLAD----ARRLFEKMRAEGIKPDIATWNAL 269
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN-- 563
I + C+ + AL+ + MQE + P + F ++ + ++ L+ D RN
Sbjct: 270 IRWHCRVGNMKRALRFFAAMQEEGMYPDPKIFMSIISRLGEQGKWDELKKLF-DKMRNRG 328
Query: 564 -IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
ESG +Y L+ + Q G F E + +K + +++ ++
Sbjct: 329 LKESGA------VYAVLVDIYGQYGRFRDAHECVAALKAEELHLSPSIF 371
>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
Length = 646
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 105/237 (44%), Gaps = 37/237 (15%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I A IQ + A + +M+ AG + TY +LL Y K M +EA LL +M +
Sbjct: 151 MITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAG 210
Query: 446 LVQNLSC--EMVVSERFSEVADKSAS--------------FTDTS--SLMDKSDLAESLI 487
+ N+ E++ + + + D++A+ FT + S ++++ E +
Sbjct: 211 ISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKAL 270
Query: 488 Q---EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ EMR+ I N I + + + + D +K+++ MQE P + T+ L+
Sbjct: 271 ETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSF 330
Query: 545 SSLEMYRDITILWGDIKR----------NI------ESGVLAVSRDLYETLLLNFLQ 585
+ M +++ ++ ++KR NI G + S D+Y+ LL LQ
Sbjct: 331 GNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQ 387
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 106/268 (39%), Gaps = 32/268 (11%)
Query: 296 YLISIGSPNLRCGLKLQIMPELLEKDSILKMEGK--------QELVLFRNGKLLHSNRAM 347
Y + I LR GL+ + P + L EG+ QE+ L S+
Sbjct: 373 YSVDIYKGLLRTGLQPTV-PTFAALMASLAREGRWQQCEKVSQEMA---EAGLQLSDACH 428
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
A LI+ Y G+ +L + ++K LC + A + A L+ +
Sbjct: 429 AGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLY 488
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
GH D + ++++ K A LL+++RK+ ++
Sbjct: 489 DNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKA-----------------QLKPDG 531
Query: 468 ASFTDTSSLMDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
++ S+ + + AE ++ EMR + N+ +Y + K + DA +++
Sbjct: 532 VTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGD 591
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRD 552
M ++RP TF LV +SSL +Y++
Sbjct: 592 MVAARVRPDNFTFNTLVGSYSSLGLYKE 619
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 26/223 (11%)
Query: 411 HPMDSTTYKSLLTAYYKVKMFREAEALLKQM-----RKSCLVQNLSCEMV---------V 456
+ +D Y SL++ + + F E L + M R + + N+ ++ +
Sbjct: 70 YSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRI 129
Query: 457 SERFSEVADKSASFTD------TSSLMDKSDLAESL--IQEMREEAALSTIYKLNSSIYF 508
F E+ D S D ++ + S E+L QEM+E N+ +
Sbjct: 130 QSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDV 189
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
+ KG M +A ++ M+ I P + T+ L+ ++ + + L K+++ S
Sbjct: 190 YGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAAL----KKSLLSKG 245
Query: 569 LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
L Y TL+ F + +E+ +E M+K N + + Y
Sbjct: 246 LCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTY 288
>gi|357462685|ref|XP_003601624.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490672|gb|AES71875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 684
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 117/280 (41%), Gaps = 37/280 (13%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI +++ + AH + D+M G D TY +L+T + K +F + L+QM +
Sbjct: 166 VIRNVLRAKQWQLAHGLFDEMLQKGLSPDKYTYSTLITHFSKQGLFDSSFFWLQQMERD- 224
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDK--------SDL--------------- 482
N+S ++V+ E++ K ++ S+ + DL
Sbjct: 225 ---NVSGDLVLYSNLIELSRKLCDYSKAISIFNALKGSGNIVPDLIACNMMISVYGKAKL 281
Query: 483 ---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
A L+QEMR+ + ++ + + + +A+ ++ M E++ + T
Sbjct: 282 FREARLLLQEMRDNGVNPSTASYSTLLAIYVDNQKFVEAVSLFSEMNEVECPIDLTTCNI 341
Query: 540 LVYGHSSLEMYRDIT-ILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGY 598
++ + L+M ++ WG K IE V++ Y T+L + + G F + +
Sbjct: 342 MIDVYGQLQMIKEADCFFWGMRKMGIEPNVVS-----YNTVLRVYGEAGLFGEAVHLFSL 396
Query: 599 MKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSK 638
M+ + + + + Y + + K L K +N E QS+
Sbjct: 397 MQMKGVPQNVVTYNTMISIYGKSL-EHDKATNLIQEMQSR 435
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 63/320 (19%), Positives = 137/320 (42%), Gaps = 43/320 (13%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G +S WL +++++ S G+ L S++I+ +L A I + +
Sbjct: 199 STLITHFSKQGLFDSSFFWLQ-QMERDNVS-GDLVLYSNLIELSRKLCDYSKAISIFNAL 256
Query: 407 ELAGHPM-DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL------VQNLSCEMVVSER 459
+ +G+ + D +++ Y K K+FREA LL++MR + + L V +++
Sbjct: 257 KGSGNIVPDLIACNMMISVYGKAKLFREARLLLQEMRDNGVNPSTASYSTLLAIYVDNQK 316
Query: 460 FSEVADKSASFTDTSSLMDKSDL---------------AESLIQEMREEAALSTIYKLNS 504
F E + + +D + A+ MR+ + N+
Sbjct: 317 FVEAVSLFSEMNEVECPIDLTTCNIMIDVYGQLQMIKEADCFFWGMRKMGIEPNVVSYNT 376
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV--YGHSSLEMYRDITILWGDIKR 562
+ + + + G+A+ ++ MQ + V T+ ++ YG SLE + ++ R
Sbjct: 377 VLRVYGEAGLFGEAVHLFSLMQMKGVPQNVVTYNTMISIYG-KSLEHDKATNLIQEMQSR 435
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHL 622
I+ + Y T++ + + G +R + ++ + +D+++Y++ + + K
Sbjct: 436 GIQPNAIT-----YSTIISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQTMIVAYQK-- 488
Query: 623 YRRLKVSNARTEAQSKRLVN 642
A A +KRL+N
Sbjct: 489 --------AGLVAHAKRLLN 500
>gi|343887304|dbj|BAK61850.1| PPR containing protein [Citrus unshiu]
Length = 567
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 20/247 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+GY K G+ E + + E T + +I L G ++ A ++ M L
Sbjct: 268 LIDGYCKKGELEEAKKCMNEMMNRGCRPNELTY-NAMIYGLCINGRVDEAKMLMAKMRLN 326
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + +T+KS+L V F +A L+ + ++ + ++ VV F ++
Sbjct: 327 GFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIG----- 381
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
KSD A SL++EMR T++ N+ + + A+ + ++M +M
Sbjct: 382 ---------KSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMD 432
Query: 530 IRPTVETFYYLVYGHSSLE-MYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588
P ++ ++ G + +D+ L + R I SG + +Y LL + + G
Sbjct: 433 CLPNFVSYNTIICGLCMAKGRMQDVEDL---VDRMIRSG-HNLDFTMYSCLLKGYCEEGN 488
Query: 589 FERVMEV 595
E VM++
Sbjct: 489 VENVMQI 495
>gi|326522248|dbj|BAK07586.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 548
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 99/235 (42%), Gaps = 21/235 (8%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
+ T+ + +ID + G ++ A I+D+ME AG + TY ++ A K EA L+
Sbjct: 274 DVTMYTVLIDGYCRTGKIQDAARIMDEMEAAGVQPNEVTYSVVIEACCKEGKSAEACNLM 333
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST 498
++M + + +A D K++ A + + M ++
Sbjct: 334 REM--------------LGAGHTPDTPLAAKVVDVMCQDGKAEEAHQMWRWMVKKNVPPD 379
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG 558
N+ IY+ CK M+ +A K++ + E +P++ T+ L+ G ++ +W
Sbjct: 380 NTITNTLIYWLCKSGMVREARKLFDEL-EKGYKPSLLTYNSLISGLCENGELQEAGKVWD 438
Query: 559 D-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
D ++R E + YE L+ F + G + V M + K++Y+
Sbjct: 439 DMVERRYEPNAMT-----YEALIKGFCKIGKPDEGAAVFTEMVTKGCAPSKVLYQ 488
>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
Length = 695
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 120/287 (41%), Gaps = 30/287 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G G+ E++ LL + +E+ + T + +IDAL + G + A +L M
Sbjct: 236 LIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTF-NILIDALCKEGRILEAQGVLAMMSKR 294
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK----------SCLVQNLSCEMVVSER 459
G D TY +L+ Y + EA L +M K + L+ +V E
Sbjct: 295 GEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEA 354
Query: 460 ---FSEVADKS--ASFTDTSSLMD------KSDLAESLIQEMREEAALSTIYKLNSSIYF 508
F E+ +K+ + +SL+D + + L+ EM A + N I
Sbjct: 355 MVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDA 414
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
CK I +AL + M + ++P + T+ ++ G+ + ++ + R ++SG
Sbjct: 415 LCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYC---LRNNVNVAKDIFNRMVKSG- 470
Query: 569 LAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ D+ Y L+ + + + + + M+ +N+ D Y S
Sbjct: 471 --LEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNS 515
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 14/164 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID L G + +LD+M + P D TY L+ A K EA +L M K
Sbjct: 374 NSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMK 433
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ N+ + D L + ++A+ + M + I N
Sbjct: 434 KGVKPNIV--------------TYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYN 479
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL 547
I +CK +M+ +A+ +++ M+ + P + ++ L+ G +L
Sbjct: 480 VLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNL 523
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 22/217 (10%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
LING K+G+ LL ++K + S +ID L + GF+ A + +
Sbjct: 164 GTLINGLSKNGQIKAALHLLQEMEKSSVQ-PNLVMYSALIDGLCKDGFVSDALGLCSQIG 222
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSE--VA 464
G +D+ TY SL+ V ++E LL +M R++ + + +++ E +
Sbjct: 223 ERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRIL 282
Query: 465 DKSASFTDTSSLMDKSDL------------------AESLIQEMREEAALSTIYKLNSSI 506
+ S +K D+ A L M + + N I
Sbjct: 283 EAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLI 342
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+CK KM+ +A+ +++ + + PT+ ++ L+ G
Sbjct: 343 DGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDG 379
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 16/192 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LINGY K E + +L + + + + +ID L LG + ++LD+M +
Sbjct: 481 LINGYCKTEMVDE-AIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDS 539
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G D TY LL A+ K + F +A +L +Q+ E + + ++ A
Sbjct: 540 GQSPDVITYNILLDAFCKTQPFDKAISLFRQI----------VEGIWPDFYTNHA----- 584
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D +K +AE ++ + + I CK G+A+ + +M++
Sbjct: 585 IVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDND 644
Query: 530 IRPTVETFYYLV 541
P TF ++
Sbjct: 645 RPPDAITFEIII 656
>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
Length = 581
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDST-TYKSLLTAYYKVKMFREAEALLKQMRKS 444
++D L + + H++L ++ G M + T+ S+++ Y K +A A+ M S
Sbjct: 290 IVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 349
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
++ N V+ + +V D + A + Q+M + +S
Sbjct: 350 GIMPNTVTYNVLINGYGKVGDLGS--------------AVEVYQQMTRLRCPPDVVTFSS 395
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
I +C+ + DAL+I+ M + +I+P V TF +++
Sbjct: 396 LIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIH 433
>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Glycine max]
Length = 693
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/302 (18%), Positives = 126/302 (41%), Gaps = 27/302 (8%)
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL 393
L N ++ M ++ + + G+ E +++ + + + TL + V+ + ++
Sbjct: 122 LISNKNFEKAHEVMQCMVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTL-NWVVKIVTEM 180
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSC 452
G +E A ++ D+M G + +Y+ ++ Y K+ E++ L M + +V N +
Sbjct: 181 GLVEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATL 240
Query: 453 EMVVSE---------------RFSEVADKSASFTDTS---SLMDKSDLAES--LIQEMRE 492
++V E RF E+ + T L + + ++ +++EM
Sbjct: 241 SLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVG 300
Query: 493 EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM-QEMKIRPTVETFYYLVYGHSSLEMYR 551
+Y + I CK A +++ ++ + +P V T+ ++ G+ E
Sbjct: 301 RGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMN 360
Query: 552 DITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+L +K E G LA + + Y TL+ + G FER E++ M ++ + Y
Sbjct: 361 RAEMLLSRMK---EQG-LAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTY 416
Query: 612 KS 613
+
Sbjct: 417 NA 418
>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
Length = 321
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 79/197 (40%), Gaps = 22/197 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID + L A +IL +M GH + TY + L K +A AL + M
Sbjct: 86 LIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAM---- 141
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE--SLIQEMREEAALSTIYKLN 503
+E+ + D T L LAE SL+ EM + N
Sbjct: 142 -----------TEKKIRL-DVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYN 189
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ + + CKG I +A K+++RM I P TF +V+G+ D +L +K
Sbjct: 190 AILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMK-- 247
Query: 564 IESGVLAVSRDLYETLL 580
S LA +Y TL+
Sbjct: 248 --SAGLAPREVIYNTLI 262
>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 604
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 32/237 (13%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID + +E A +L++M+ G P Y SL+ A K K + A L +++++
Sbjct: 377 SILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE 436
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+C + V+ + K+ D ++ D EM + +Y N
Sbjct: 437 NCGSSSARVYAVMIKHLG----KAGRLDDAINMFD----------EMNKLGCAPDVYAYN 482
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITIL 556
+ + + M+ +AL RRMQE P + ++ ++ G H ++EM ++
Sbjct: 483 ALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMK-- 540
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + V++ Y T+L G FE +++ M D + Y S
Sbjct: 541 ----QSTVRPDVVS-----YNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSS 588
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 105/249 (42%), Gaps = 23/249 (9%)
Query: 358 GKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTT 417
G+ ++ L + E H F ++ S +I A +LG ++A +L++M+ G +
Sbjct: 175 GQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKI 234
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477
Y L+ ++K A +L ++MR ++ ++T+ +
Sbjct: 235 YTMLIALFFKFNDAHGALSLFEEMRHQYCRPDV-----------------FTYTELIRGL 277
Query: 478 DKS---DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
K+ D A EM+ E +N+ I F K + DA+K+++ M+ ++ P+V
Sbjct: 278 GKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSV 337
Query: 535 ETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVME 594
T+ ++ + W +R ESG+ + S Y L+ F + E+ M
Sbjct: 338 VTYNTIIKALFESKSRASEVPSW--FERMKESGI-SPSSFTYSILIDGFCKTNRMEKAMM 394
Query: 595 VIGYMKKQN 603
++ M ++
Sbjct: 395 LLEEMDEKG 403
>gi|255661084|gb|ACU25711.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 429
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + +NS W S+ + + GE + D+++ + + G L
Sbjct: 224 SSPYMDMLANKFTSYSQNS---WKPFSLARGVRVTAKGEDSFDLDMVNTYLCIFLAKGKL 280
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F+EA ++L M ++ +++ V+
Sbjct: 281 SVACKLFEIFTNMGVDPASYTYNSIMSSFVKKGYFKEAWSVLHAMGETVYPADIATYNVI 340
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 341 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 386
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS +D
Sbjct: 387 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLKD 422
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREEAAYTMFLDLKRKGNNFVDGITYSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + A L+K +R LV NL
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWAGKLMKHIRDGNLVPNL 165
>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
Length = 951
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 87/198 (43%), Gaps = 28/198 (14%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S ++D L + G A+ + +M+ G + TY +L+ + K + E+ LL +M
Sbjct: 296 SALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVS 355
Query: 444 SCLVQNLSCEMVVSERF---------------SEVADKSASFTDTSSLMDKS------DL 482
+V +L + +R ++ + + +F + L+D D
Sbjct: 356 RGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDG 415
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
AE ++ +M E++ + + +S I K +G A R+M++ I P V T+ L+
Sbjct: 416 AEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLID 475
Query: 543 G-------HSSLEMYRDI 553
G ++L++YRD+
Sbjct: 476 GFFKFQGQEAALDVYRDM 493
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 386 VIDALI----QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM 441
V+D+L+ + G +E A + DM+ G +D Y +L+ +K A + +++
Sbjct: 504 VVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQEL 563
Query: 442 RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYK 501
+ +NLS + VV F F++ A+S ++EMR
Sbjct: 564 ME----KNLSPDAVVYNVFINCLCTLGKFSE----------AKSFLKEMRNTGLEPDQAT 609
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
N+ I C+ ALK+ + M+ I+P + T+ LV G
Sbjct: 610 YNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVG 651
Score = 39.7 bits (91), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 90/246 (36%), Gaps = 25/246 (10%)
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL 446
I+ L LG A L +M G D TY +++ A + +A LLK+M+++ +
Sbjct: 579 INCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSI 638
Query: 447 VQNL--SCEMVVSERFSEVADK---------SASFTDTS----------SLMDKSDLAES 485
NL +VV + V K SA F TS S + D+
Sbjct: 639 KPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILE 698
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
+ + M + I N+ ++ C M +A + M I P TF L+ GH
Sbjct: 699 IHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHC 758
Query: 546 SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMY 605
+ ++ + S +A + TLL G V+ MKK +
Sbjct: 759 KSSHLDNAFAIYAQMLHQGLSPNIAT----FNTLLGGLESAGRIGEADTVLSDMKKVGLE 814
Query: 606 VDKLMY 611
+ L Y
Sbjct: 815 PNNLTY 820
>gi|15240991|ref|NP_198689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171307|sp|Q9FKR3.1|PP404_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g38730
gi|10176899|dbj|BAB10131.1| unnamed protein product [Arabidopsis thaliana]
gi|332006971|gb|AED94354.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 14/146 (9%)
Query: 421 LLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS 480
LL + K ++ + K+M K +V N+ V+ S+ D
Sbjct: 174 LLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGD--------------P 219
Query: 481 DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
+ AE L+ EM E+ I+ N+ I +CK M +AL + RM+ + P + T+
Sbjct: 220 EKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSF 279
Query: 541 VYGHSSLEMYRDITILWGDIKRNIES 566
++G S R+ T L+ +IK ++ +
Sbjct: 280 IHGFSREGRMREATRLFREIKDDVTA 305
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 90/447 (20%), Positives = 159/447 (35%), Gaps = 101/447 (22%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
P + ++++A G ++ ++ M + G + H+ +L + C+ +++ +
Sbjct: 297 PTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLI---DGLCKENKMDEA 353
Query: 235 KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQK 294
+ + ++S Y +L+ + K ID A E ILD+ PN + +
Sbjct: 354 RKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFE-ILDLMESNSCGPNTRTYNE--- 409
Query: 295 PYLISIGSPNLRCGL----KLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKL 350
L CGL K+ LL K +E K L L+H + L
Sbjct: 410 ----------LICGLCKKRKVHKAMALLNK----MLERKLSPSLITYNSLIHGQCKVNDL 455
Query: 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG 410
+ Y+ LLS+ E+ + S ID L + G +E A + D ++ G
Sbjct: 456 ESAYR-----------LLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG 504
Query: 411 HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASF 470
+ Y +L+ Y KV
Sbjct: 505 VKANEVIYTALIDGYCKV------------------------------------------ 522
Query: 471 TDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI 530
K D+A SL++ M +A L Y N I CK K + +A + +M M +
Sbjct: 523 -------GKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGV 575
Query: 531 RPTVETFYYLVYGHSSLEMYRD------ITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
+PTV T+ L+ EM +D + + + + V Y L +
Sbjct: 576 KPTVVTYTILIG-----EMLKDGAFDHALKVFNHMVSLGYQPDVCT-----YTAFLHAYF 625
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMY 611
G E V +VI M ++ + D + Y
Sbjct: 626 SQGMLEEVDDVIAKMNEEGILPDLVTY 652
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 101/234 (43%), Gaps = 19/234 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I +++ G + A + + M G+ D TY + L AY+ M E + ++ +M +
Sbjct: 585 LIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEG 644
Query: 446 LVQNLSCEMVVSERFSEVADKSASF------TDTS--------SLMDKSDLAESLIQEMR 491
++ +L V+ + ++ + +F DT S++ K+ E+ ++E R
Sbjct: 645 ILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETR 704
Query: 492 EEAALSTIYKLNS-SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMY 550
E + ++ +NS I K ALK++ +M E V + L+ G E
Sbjct: 705 SEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERL 764
Query: 551 RDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
+ L +K E G ++ S D+Y +LL + G + + ++ M + +
Sbjct: 765 EEAQGLVHHMK---ERG-MSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGL 814
>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 833
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 99/236 (41%), Gaps = 38/236 (16%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM---- 441
VI L + G + A ++ +M G D TY S++ A K + +AE +L+QM
Sbjct: 233 VIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNG 292
Query: 442 ------RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAA 495
+C++ S +S ++ E A + +EM +
Sbjct: 293 FQPNKVTYNCMIHGYS----ISGQWKETA--------------------GMFREMTSQGL 328
Query: 496 LSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITI 555
+ I NS + CK +A + + M +P + T+ L++G+++ + D+
Sbjct: 329 MPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLN 388
Query: 556 LWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
L+ ++ N G++A R ++ ++ + + G + M + M++Q + D Y
Sbjct: 389 LFNSMEGN---GIVADQR-VFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTY 440
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 93/457 (20%), Positives = 176/457 (38%), Gaps = 56/457 (12%)
Query: 159 FLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIIL 218
LH +KS G P+ + +N V+H R G K ++ M Q GVV D ++
Sbjct: 212 LLHTMVKKSGGCS---PNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPD---VVTY 265
Query: 219 AQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNR 278
I + C+ + K + + Q+ + F + ++ + +G+
Sbjct: 266 TSIIDALCKARAMDKAELVLRQMIS------NGFQPNKVTYNCMIHGYSISGQWKETAGM 319
Query: 279 YREPLPNPKLRQDAQKPYLISIGS--PNLRCGLKLQIMPELLEKDSILKMEGKQELVLFR 336
+RE + P +++ S +L K + E DS+ K LV +
Sbjct: 320 FRE------MTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFF--DSMAAKGHKPNLVTY- 370
Query: 337 NGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL 396
+ L++GY G ++ L S++ + + + + VIDA + G +
Sbjct: 371 -----------SVLLHGYATEGCFVDMLNLFNSMEG-NGIVADQRVFNIVIDAYGKRGMM 418
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
+ I M+ G D+ TY ++ A+ ++ +A QM + L E +V
Sbjct: 419 DETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQM----IAMGLKPEGIV 474
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEA-ALSTIYKLNSSIYFFCKGKMI 515
+ F +L+ A+ L+ EM I NS I CK +
Sbjct: 475 YHSLIQ------GFCMHGNLVK----AKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRV 524
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSL-EMYRDITILWGDIKRNIESGVLAVSRD 574
+A I+ + + RP V TF L+ G+ + ++ + +L I IE V++
Sbjct: 525 VEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVS---- 580
Query: 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
Y TL+ + + G + + + G M + + + Y
Sbjct: 581 -YNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITY 616
>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
Length = 741
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 122/280 (43%), Gaps = 33/280 (11%)
Query: 339 KLLHSNRAMA---------KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDA 389
+LLHS A LI+ KHG+ E L S+ ++ + + + +IDA
Sbjct: 305 RLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQ-VIYTSMIDA 363
Query: 390 LIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN 449
L + G + AH+++ + G D+ Y SL+ + EA +LL M +S + N
Sbjct: 364 LCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQAN 423
Query: 450 LSCEMVVSERFSEVADKS-ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
+ F+ + DK F S M +A + + + + T++ I
Sbjct: 424 -------AVPFTILIDKHLREFRSDSPKMISDRMAAAGV---KPDVVTYTVF-----IRS 468
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
+C+ + DA + +M + +RP + T+ L+ G+++L + ++ + +K I++G
Sbjct: 469 YCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGL---VSQAFSSLKNMIDNG- 524
Query: 569 LAVSRDLYETLLLNFL--QGGYFERVMEVIGYMKKQNMYV 606
D T+LL L + Y + V + I K +M V
Sbjct: 525 -CKPNDESYTVLLGLLLKKNSYHDLVADSISLWKIVDMKV 563
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 108/284 (38%), Gaps = 28/284 (9%)
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL 393
L R G L + A + GY + G + L L + + + T + ++ L
Sbjct: 100 LLRAG-LAPDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPFTYAA-LLQGLCGA 157
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G + A + M G DS Y ++ EA ALL V N++
Sbjct: 158 GMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVY 217
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
+ + + D +LA + + M+ + L + I FCK
Sbjct: 218 NALIDGYCSTGDL--------------ELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSG 263
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS---LE-MYRDITILWGDIKRNIESGVL 569
+ A+ +Y RM E + P V T+ L+ G S LE +R + ++E+ L
Sbjct: 264 KVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFR--------LLHSMEACGL 315
Query: 570 AVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
A + L+ + G E + +G + ++ + V++++Y S
Sbjct: 316 APNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTS 359
>gi|255661086|gb|ACU25712.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 309
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + NS W LS+ + + GE + D+++ + + G L
Sbjct: 104 SSPXMDMLANKFTSYSHNS---WKPLSLARGVRVTAKGEDSFDLDMVNTYLSIFLAKGKL 160
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F+EA ++L ++ +++ V+
Sbjct: 161 SVACKLFEIFTNMGVDPASYTYNSIMSSFVKKGYFKEAWSVLHAXGETVYPXDIATYNVI 220
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 221 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 266
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS +D
Sbjct: 267 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLKD 302
>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
Length = 754
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/294 (19%), Positives = 119/294 (40%), Gaps = 29/294 (9%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
SN ++ +++G+ K G+ + + + + F + + +++ L + G ++ A +I
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEI 317
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVS---- 457
+D M G+ D TY S+++ K+ +EA L QM + C ++ ++S
Sbjct: 318 MDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCK 377
Query: 458 -ERFSEVADKSASFTDTSSLMD---------------KSDLAESLIQEMREEAALSTIYK 501
+ E + + T L D +A L +EMR + +
Sbjct: 378 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFT 437
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
N I C + +AL + ++M+ +V T+ L+ G R+ ++ +++
Sbjct: 438 YNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEME 497
Query: 562 RNIESGVLAVSRD--LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
V VSR+ Y TL+ + E +++ M + DK Y S
Sbjct: 498 ------VHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNS 545
>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
Length = 614
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 18/224 (8%)
Query: 390 LIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN 449
+I+ G L +A ++ D+M G P T+ +L++ K A AL M K+
Sbjct: 254 MIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLMAKA----G 309
Query: 450 LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFF 509
++ ++ F + K+ D A + +EMRE + I
Sbjct: 310 VAPDVYTYGAFMQGLCKAGRIQD----------AVEMFEEMRERGVNPNTVVFTTLIDAH 359
Query: 510 CKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVL 569
CK + L+++R M I+ + + L G L RD+ DI + + L
Sbjct: 360 CKEGNVAAGLELHREMATRGIKTDLVAYNALANG---LCRVRDLKA-ANDIVEEMRNNGL 415
Query: 570 AVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ Y TL+ F + G + ME+ M + + +D++ Y +
Sbjct: 416 KPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTT 459
>gi|334188265|ref|NP_199684.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635750|sp|Q9FKC3.2|PP424_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g48730, chloroplastic; Flags: Precursor
gi|332008334|gb|AED95717.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 508
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L++ Y + G+ LL +K H+ + S +I + +Q+ + D+L DM
Sbjct: 191 LVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQ 250
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM 441
G ++ TY +L+ AY K KMF E E+ L QM
Sbjct: 251 GIRPNTITYNTLIDAYGKAKMFVEMESTLIQM 282
>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 116/264 (43%), Gaps = 26/264 (9%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEH---HSFGESTLCSDVIDALIQLGFLEAAHDILD 404
LING K G S LL S+ +++ + F +T +ID+L + + A ++
Sbjct: 137 GTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNT----IIDSLCKDRQVTEAFNLFS 192
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
+M G D TY SL+ A + ++ LL +M S ++ + VVS F+ V
Sbjct: 193 EMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPD-----VVS--FNTVV 245
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
D + + + D+ + +IQ + + N+ I +CK + I A+ ++
Sbjct: 246 D---ALCKEGKVTEAHDVVDKMIQR---GGCMPNVISYNTLINGYCKIQRIDKAMYLFGE 299
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
M ++ P T+ L++G +E +D L+ ++ + L R +LL++L
Sbjct: 300 MCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYR-----ILLDYL 354
Query: 585 -QGGYFERVMEVIGYMKKQNMYVD 607
+ Y M ++ ++ N+ D
Sbjct: 355 CKNRYLAEAMALLKAIEGSNLDPD 378
>gi|297821008|ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324225|gb|EFH54646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 766
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 104/530 (19%), Positives = 216/530 (40%), Gaps = 127/530 (23%)
Query: 49 HGI-PERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQ 107
HG+ P + RFI+ LC +A + A D++ + K KA L A LS L R
Sbjct: 253 HGVSPNSVWLTRFISSLCKNARTN---AAWDILSDLMKNKAPLEAPPFNALLS-CLGR-- 306
Query: 108 MPVPASMILRLMLGREN---LPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSA 164
+ +GR N L ++ + V + I T S + + VF +
Sbjct: 307 ---------NMNIGRMNALVLKMDEMKIRPDVVTLGILINTLCKSRRVDEALQVFEQMCG 357
Query: 165 EKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEM 224
++++ +IK D++ FN ++ + + G + +A +++ ++ E
Sbjct: 358 KRTDDGNVIKADSIHFNTLIDG----------------LCKVGRLKEAEELLVRMKMEE- 400
Query: 225 NCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLP 284
+C + ++ Y L+ + + ++ A E++
Sbjct: 401 ----------RCVPNTVT----------YNCLIDGYCRAGKLETAKEVV----------- 429
Query: 285 NPKLRQDAQKPYLISI----GSPNLRCGLKLQIMPEL-LEKDSILKMEGKQELVLFRNGK 339
++++D KP ++++ G GL + ++ + +EK+ + K +V +
Sbjct: 430 -SRMKEDGIKPDVVTVNTIVGGMCRHHGLNMAVLFFMDMEKEGV-----KGNVVTYMT-- 481
Query: 340 LLHSNRAMA---KLINGYKKH-----GKNSELSWLLLS----IKKEHHS------FGEST 381
L+H+ +++ K ++ + K ++++ + L+S ++++H + E
Sbjct: 482 LIHACCSLSNIEKAMHWFDKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLREGG 541
Query: 382 LCSDVIDALIQLGFL------EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAE 435
D++ + +G E +++L DME G DS TY +L++ + K K F E
Sbjct: 542 FSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDSITYNTLISFFGKHKDFESVE 601
Query: 436 ALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAA 495
+++QMR+ L ++ V E + V +L E+L ++ ++
Sbjct: 602 RMMEQMREDELDPTVATYGAVIEAYCSVG----------------ELGEAL--KLFKDMG 643
Query: 496 LSTIYKLNSSIY-----FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
L + N+ IY F K G AL + M+ +RP VET+ L
Sbjct: 644 LRSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNAL 693
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 107/282 (37%), Gaps = 55/282 (19%)
Query: 305 LRCGL---KLQIMPELLEKDSILKMEG-KQELVLFR--NGKLLHSNRAMAKLINGYKKHG 358
LR GL +++ E+L+K+S+ ++VL G+LL + + LI+ + HG
Sbjct: 196 LRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWKGRLLTEEKIIG-LISRFSSHG 254
Query: 359 KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTY 418
+ WL I S+LC + AA DIL D+ P+++ +
Sbjct: 255 VSPNSVWLTRFI---------SSLCKN--------ARTNAAWDILSDLMKNKAPLEAPPF 297
Query: 419 KSLLTAYYKVKMFREAEALLKQMRK----------SCLVQNLSCEMVVSERFSEVADKSA 468
+LL+ + AL+ +M + L+ L V E
Sbjct: 298 NALLSCLGRNMNIGRMNALVLKMDEMKIRPDVVTLGILINTLCKSRRVDEALQVFEQMCG 357
Query: 469 SFTDTSSLMDKSDL-----------------AESLIQEMR-EEAALSTIYKLNSSIYFFC 510
TD +++ + AE L+ M+ EE + N I +C
Sbjct: 358 KRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKMEERCVPNTVTYNCLIDGYC 417
Query: 511 KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEM 549
+ + A ++ RM+E I+P V T +V G H L M
Sbjct: 418 RAGKLETAKEVVSRMKEDGIKPDVVTVNTIVGGMCRHHGLNM 459
>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
[Vitis vinifera]
gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 350 LINGYKKHGKN-SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
+++ Y K G++ +++ LL ++ F E T CS VI A + G L+ A ++
Sbjct: 250 MLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFT-CSTVISACGREGLLDEARKFFARLKS 308
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC--EMVVSERFSEVADK 466
G+ + TY SLL + K ++ EA ++LK+M K+ +L E+V + + ++
Sbjct: 309 EGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEE 368
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
A F DT M + + + I + K AL +R+M+
Sbjct: 369 GADFIDT----------------MIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMK 412
Query: 527 EMKIRPTVETF 537
E P V T+
Sbjct: 413 ESGCVPNVCTY 423
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 14/144 (9%)
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G+ D + S+L+ + K KM+ A +L+ +R+S L +L S
Sbjct: 625 GYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVT--------------YNS 670
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D + + E +++ +++ + N+ I FC+ ++ +A++ M
Sbjct: 671 LMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISG 730
Query: 530 IRPTVETFYYLVYGHSSLEMYRDI 553
IRP + T+ V G+S M+ ++
Sbjct: 731 IRPCIVTYNTFVAGYSGKGMFSEV 754
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 17/195 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LINGY G + L + K S T + +I+++ + G L A + LD M
Sbjct: 314 LINGYCNVGNFHQALVLHAEMVKNGLSPNVVTY-TTLINSMCKAGNLNRAMEFLDQMRDR 372
Query: 410 G-HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G HP + TY +L+ + + ++A ++K+M V F+
Sbjct: 373 GLHP-NGRTYTTLIDGFSQQGFLKQAYQIMKEM--------------VENGFTPTIITYN 417
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ + ++ + + A L+QEM E + + ++ I FC+ + + A ++ M
Sbjct: 418 ALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAK 477
Query: 529 KIRPTVETFYYLVYG 543
I P V T+ L+ G
Sbjct: 478 GISPDVATYSSLIQG 492
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 28/233 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI+ L + G ++ +IL++M + D T+ +L+ Y V F +A L +M K+
Sbjct: 279 VINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNG 338
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS---DLAESLIQEMREEAALSTIYKL 502
L N+ ++T + M K+ + A + +MR+
Sbjct: 339 LSPNV-----------------VTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTY 381
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
+ I F + + A +I + M E PT+ T+ L+ GH L D + G ++
Sbjct: 382 TTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDAS---GLLQE 438
Query: 563 NIESGVL--AVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
IE G + VS Y T++ F + E+ ++ M + + D Y S
Sbjct: 439 MIERGFIPDVVS---YSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSS 488
Score = 38.9 bits (89), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 17/196 (8%)
Query: 350 LINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
LIN K G N + +L + H G + + +ID Q GFL+ A+ I+ +M
Sbjct: 349 LINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTY--TTLIDGFSQQGFLKQAYQIMKEMVE 406
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G TY +L+ + + +A LL++M + + ++ + F +
Sbjct: 407 NGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEK 466
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+F L EM + + +S I CK + +G+ +++ M +
Sbjct: 467 AF--------------QLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSL 512
Query: 529 KIRPTVETFYYLVYGH 544
+ P T+ L+ +
Sbjct: 513 GLPPDEVTYTSLINAY 528
>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
Length = 506
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 365 WLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424
+L +IK + ++F + ++D + G L+ A ++LD M + + +T+ +L+
Sbjct: 269 MILENIKPDVYTF------NILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDG 322
Query: 425 YYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE 484
+ K + +E + + M K + N VV+ S D L+ + + A+
Sbjct: 323 FCKDRKMKEGKTVFAMMMKQGIKPN-----VVTY---------CSLMDGYCLVKQVNKAK 368
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ M + + ++ N I FCK K + A+K++ M I P V T+ L+ G
Sbjct: 369 KIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDG 427
>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
Length = 586
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDST-TYKSLLTAYYKVKMFREAEALLKQMRKS 444
++D L + + H++L ++ G M + T+ S+++ Y K +A A+ M S
Sbjct: 295 IVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 354
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
++ N V+ + +V D + A + Q+M + +S
Sbjct: 355 GIMPNTVTYNVLINGYGKVGDLGS--------------AVEVYQQMTRLRCPPDVVTFSS 400
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
I +C+ + DAL+I+ M + +I+P V TF +++
Sbjct: 401 LIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIH 438
>gi|255661098|gb|ACU25718.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
Length = 431
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSF--GESTLCSDVIDALIQL----GFL 396
S+ M L N + H S SW L S+ + GE + D+++ + + G L
Sbjct: 226 SSPYMDMLANKFTSH---SHRSWKLFSLARGVRVMAKGEDSFEIDMVNTYLSIFLAKGEL 282
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S++ ++ K F+EA ++L M ++ +++ V+
Sbjct: 283 SVACKLFEIFTNMGVDPVSYTYNSIMCSFVKKGYFKEAWSVLHAMGETVNPADIATYNVI 342
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA +++++ +E I N+ I K I
Sbjct: 343 IQGLGK--------------MGRADLANVVLEKLMKEGGYLDIVMYNTLINALGKAGRID 388
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS +D
Sbjct: 389 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLKD 424
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + LE A ++++ME
Sbjct: 65 LIDGLYKNGREEAAYTMFLDLKRKGNNFVDGITYSIVILHLCREDQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + E L+K +R LV +L
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDGTERLMKHIRDGNLVPSL 165
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 17/195 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LINGY G + L + K S T + +I+++ + G L A + LD M
Sbjct: 314 LINGYCNVGNFHQALVLHAEMVKNGLSPNVVTY-TTLINSMCKAGNLNRAMEFLDQMRDR 372
Query: 410 G-HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G HP + TY +L+ + + ++A ++K+M V F+
Sbjct: 373 GLHP-NGRTYTTLIDGFSQQGFLKQAYQIMKEM--------------VENGFTPTIITYN 417
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ + ++ + + A L+QEM E + + ++ I FC+ + + A ++ M
Sbjct: 418 ALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAK 477
Query: 529 KIRPTVETFYYLVYG 543
I P V T+ L+ G
Sbjct: 478 GISPDVATYSSLIQG 492
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 28/233 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI+ L + G ++ +IL++M + D T+ +L+ Y V F +A L +M K+
Sbjct: 279 VINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNG 338
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS---DLAESLIQEMREEAALSTIYKL 502
L N+ ++T + M K+ + A + +MR+
Sbjct: 339 LSPNV-----------------VTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTY 381
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
+ I F + + A +I + M E PT+ T+ L+ GH L D + G ++
Sbjct: 382 TTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDAS---GLLQE 438
Query: 563 NIESGVL--AVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
IE G + VS Y T++ F + E+ ++ M + + D Y S
Sbjct: 439 MIERGFIPDVVS---YSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSS 488
Score = 38.9 bits (89), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 17/196 (8%)
Query: 350 LINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
LIN K G N + +L + H G + + +ID Q GFL+ A+ I+ +M
Sbjct: 349 LINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTY--TTLIDGFSQQGFLKQAYQIMKEMVE 406
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G TY +L+ + + +A LL++M + + ++ + F +
Sbjct: 407 NGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEK 466
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+F L EM + + +S I CK + +G+ +++ M +
Sbjct: 467 AF--------------QLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSL 512
Query: 529 KIRPTVETFYYLVYGH 544
+ P T+ L+ +
Sbjct: 513 GLPPDEVTYTSLINAY 528
>gi|297736961|emb|CBI26162.3| unnamed protein product [Vitis vinifera]
Length = 636
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/262 (20%), Positives = 98/262 (37%), Gaps = 24/262 (9%)
Query: 354 YKKHGKNSELSWLLLSIKKEHHSFG-ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHP 412
+ +H KN+ +S F +S+ C+ + DAL++ G AA LD P
Sbjct: 133 FVEHQKNALISLRFFHWLSSQSGFSPDSSSCNVLFDALVEAGACNAAKSFLDSTNFNPKP 192
Query: 413 MDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTD 472
Y L K + EA ++ Q++ + +++ S
Sbjct: 193 ASLEAYIRCLC---KGGLVEEAISVFGQLKGIGVCASIA--------------TWNSVLR 235
Query: 473 TSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP 532
S + D L EM E + ++ ++ + + FC I D + RR+ E + P
Sbjct: 236 GSVRAGRIDFVWELYGEMVESSVVADVHTVGYLVQAFCDENRISDGHNLLRRVLEDGVVP 295
Query: 533 TVETFYYLVYGHSSLEMYRDIT-ILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFER 591
F L+ G + Y ++ +L I RN + Y+ ++ +GG
Sbjct: 296 RNAAFNKLISGFCKDKAYGRVSDLLHSMIARNRAPDIFT-----YQEVVNGLCKGGKGPE 350
Query: 592 VMEVIGYMKKQNMYVDKLMYKS 613
V +K + D++MY +
Sbjct: 351 GFRVFKDLKDRGYAPDRVMYTT 372
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 118/289 (40%), Gaps = 32/289 (11%)
Query: 336 RNGKLLHS----NRA-----MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDV 386
R LLHS NRA +++NG K GK E + +K ++ + + + +
Sbjct: 315 RVSDLLHSMIARNRAPDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYA-PDRVMYTTM 373
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL 446
I L ++ +L A + +M G + TY +++ Y+K+ EA + ++M
Sbjct: 374 IHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREM----- 428
Query: 447 VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506
C+ E+ + + DL E EM + L N+ +
Sbjct: 429 -----CDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFE----EMSHKGILRNHITYNALV 479
Query: 507 YFFCK-GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNI 564
FCK GK++ A +Y + + I+P+ ++ L+ ++ ILW D++ R +
Sbjct: 480 RGFCKEGKIVEGANLLYELLDQ-GIQPSAASYAPLIDKLCQEGDMQNAKILWDDMQNRGM 538
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
E V ++ ++ F + G ME + M + + K ++S
Sbjct: 539 EPAVCT-----HDFMITGFCKQGCAMEGMEWLTTMLRSKLRPQKKSFES 582
>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 126/298 (42%), Gaps = 29/298 (9%)
Query: 328 GKQELVLFRN---GKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCS 384
G + ++FR G +L + L+ + K + ++S LL ++ SF + T +
Sbjct: 26 GDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMES-GGSFPDITSYN 84
Query: 385 DVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
+++A Q G ++ A + M+ AG ++ TY LL Y + + + L +M+ S
Sbjct: 85 VLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVS 144
Query: 445 CLVQNLSCEMVVSERFSE------------------VADKSASFTDTSSLMDKSDL---A 483
N + ++ F E V ++ K L A
Sbjct: 145 NTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDA 204
Query: 484 ESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ ++ M E+ + + I + + + +AL + M E+ +PTVET+ L+
Sbjct: 205 KKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQM 264
Query: 544 HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
+ +Y++ + + + +SGV A +RD + ++ F QGG FE ++ M+K
Sbjct: 265 FAKGGLYKESEAI---LLKMGQSGV-ARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEK 318
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 89/209 (42%), Gaps = 20/209 (9%)
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD 465
M G D TY +LL+A + + EAE + + M + ++ +++ + E F +
Sbjct: 1 MRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGK--- 57
Query: 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+++ + L++EM + I N + + I +A+ ++R+M
Sbjct: 58 -----------LNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQM 106
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFL 584
Q P T+ L+ + Y D+ L+ ++K N E Y L+ F
Sbjct: 107 QGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAAT-----YNILINVFG 161
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+GGYF+ V+ + M ++N+ + Y+
Sbjct: 162 EGGYFKEVVTLFHDMVEENVEPNMETYEG 190
>gi|186478651|ref|NP_173362.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806505|sp|Q9LN69.2|PPR50_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g19290
gi|332191705|gb|AEE29826.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 904
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 104/235 (44%), Gaps = 29/235 (12%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAE---ALLKQ 440
+ +I+ +G +E +L M G + TY SL+ Y K + EAE LLK+
Sbjct: 265 NSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKE 324
Query: 441 -------------MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD---KSDL-- 482
M C + + V + E+ ++ + T +SL++ KS
Sbjct: 325 KKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNT-TICNSLINGYCKSGQLV 383
Query: 483 -AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
AE + M + + + N+ + +C+ + +ALK+ +M + ++ PTV T+ L+
Sbjct: 384 EAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILL 443
Query: 542 YGHSSLEMYRDITILWG-DIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEV 595
G+S + + D+ LW +KR + + ++ S TLL + G F M++
Sbjct: 444 KGYSRIGAFHDVLSLWKMMLKRGVNADEISCS-----TLLEALFKLGDFNEAMKL 493
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 94/242 (38%), Gaps = 28/242 (11%)
Query: 327 EGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLC 383
E + L + KL+ L++GY + G+ + + + G +T+C
Sbjct: 314 EAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDA----VRVHDNMIEIGVRTNTTIC 369
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I+ + G L A I M D TY +L+ Y + EA L QM +
Sbjct: 370 NSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQ 429
Query: 444 SCLVQNLSCEMVVSERFSEV-------------------ADKSASFTDTSSLMDKSDLAE 484
+V + ++ + +S + AD+ + T +L D E
Sbjct: 430 KEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNE 489
Query: 485 S--LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
+ L + + L+ LN I CK + + +A +I + + +P V+T+ L +
Sbjct: 490 AMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSH 549
Query: 543 GH 544
G+
Sbjct: 550 GY 551
>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 562
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/306 (19%), Positives = 132/306 (43%), Gaps = 55/306 (17%)
Query: 170 AELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRD 229
+E I PD FN+++ A + G + ++ + +M + G+ D ++ + + C +
Sbjct: 304 SENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPD---VVTYNSLMDRYCLVN 360
Query: 230 ELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLR 289
E+ K K + +S + Y +++ K +D A +L +M+
Sbjct: 361 EVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHK---------- 410
Query: 290 QDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAK 349
QI P ++ S++ +G L ++G++ ++ +
Sbjct: 411 ----------------------QIFPNVITYSSLI--DG-----LCKSGRISYA----LE 437
Query: 350 LINGYKKHGKNSELSWLLLSIKKE---HHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
L + G+ ++ L +K + + F + L ID L + G LE A +I +D+
Sbjct: 438 LNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTIL----IDGLCKGGRLEDARNIFEDL 493
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVSERF-SEVA 464
+ G+ + TY ++ + +F EA LL +M+ +C + N ++ E+++ F ++
Sbjct: 494 LVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEIIIRSLFDNDEN 553
Query: 465 DKSASF 470
DK+ +F
Sbjct: 554 DKAENF 559
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 14/207 (6%)
Query: 337 NGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL 396
+GKLL N M I K ++ L S F + + +I+ +G L
Sbjct: 233 DGKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKL 292
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
+ A + + M D T+ L+ A+ K +EA+ L M K Q + ++V
Sbjct: 293 KDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMK----QGIKPDVVT 348
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
S D L+++ + A+S+ M + + + I FCK KM+
Sbjct: 349 YN----------SLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVD 398
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYG 543
A+K+++ M +I P V T+ L+ G
Sbjct: 399 QAMKLFKEMHHKQIFPNVITYSSLIDG 425
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 108/291 (37%), Gaps = 57/291 (19%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
VID L++ G +E +DM + TTY ++ K +M +A + +QM +K
Sbjct: 404 VIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKG 463
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
C+ ++ + D S K D A L+ M + T S
Sbjct: 464 CVPDTIT---------------YTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGS 508
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF-----YYLVYGHSSLEMYR-------- 551
++ FCK MI +A ++ +M+E P + F YYL G + E Y+
Sbjct: 509 IVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAE-EAYQVLTEMTAR 567
Query: 552 ----DITILWGDIKRNIESGVLAVSRDL---------------YETLLLNFLQGGYFERV 592
D+ + I +G + +R + Y T++ NF + G E
Sbjct: 568 GCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAA 627
Query: 593 MEVIGYMKKQNMYVDKLMYKS--------EFLKHHKHLYRRLKVSNARTEA 635
E++ M K + D Y S E + +Y R+ S + A
Sbjct: 628 GEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNA 678
Score = 45.4 bits (106), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 130/316 (41%), Gaps = 45/316 (14%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
A LI+G+ K G+ LL K + L + VI + G L+ IL++
Sbjct: 92 AFTTLIHGFCKAGQPQVGHMLLNQALKRFRP--DVFLYTSVIHGYCKAGDLDTGFKILEE 149
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS----------CLVQNLS---- 451
M AG D+ Y L+ K+ EA L ++MRKS L++ LS
Sbjct: 150 MLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGK 209
Query: 452 ----CEMVVS------ERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYK 501
CE+ E + EV D S K D A + Q + + ++
Sbjct: 210 LDEACELYREMIERGYEPYLEVQD---SLIFALCKAGKVDEANEIYQTVVAKKVATSRVA 266
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS-------SLEMYRDIT 554
NS + +CK + D LK+ +M E P ++T+ LV G S +LE+++ ++
Sbjct: 267 YNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLS 326
Query: 555 ILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSE 614
+G K N + + + LY+ + + +F+ ++VI Y V K + S+
Sbjct: 327 S-YG-CKPNAAT-YTTIIQGLYDAQRMEEAK-AFFDEALDVISYTT-----VIKGLADSK 377
Query: 615 FLKHHKHLYRRLKVSN 630
+ L+ +LK +
Sbjct: 378 RIDEACELFEKLKTAG 393
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 76/370 (20%), Positives = 137/370 (37%), Gaps = 56/370 (15%)
Query: 199 IMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLS 258
+ E M Q G V D + L + DE +K +D + T Y S++
Sbjct: 455 VFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKL---LDVMLTKGPEPTAVTYGSIVH 511
Query: 259 LHFKFDDIDAAGELILDMNRYREPLPNPKLRQ-DAQKPYLISIGSPNLRCGLKLQIMPEL 317
K D I+ A E+I M RE P L + Y +S G R Q++ E+
Sbjct: 512 GFCKLDMINEAKEVIAQM---RERGCEPGLFIFTSLLSYYLSKG----RAEEAYQVLTEM 564
Query: 318 LEKDSILKMEGKQELV--LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHH 375
+ + L+ LF G++ + +I +K L++
Sbjct: 565 TARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMI---EKGCAPDALTY---------- 611
Query: 376 SFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAE 435
+I ++G +EAA +IL+ M +G D Y SL+ Y K++ +A
Sbjct: 612 --------GTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 663
Query: 436 ALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLI-------- 487
+ +M S + N V+ + +F+ +++K ++ +L+
Sbjct: 664 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDG 723
Query: 488 --------------QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT 533
QEM + + + S IY K I +A K+ M ++ + P
Sbjct: 724 LGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPD 783
Query: 534 VETFYYLVYG 543
V+ + L+ G
Sbjct: 784 VQAYSALITG 793
>gi|255661094|gb|ACU25716.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 311
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 83/175 (47%), Gaps = 24/175 (13%)
Query: 378 GESTLCSDVIDALIQL----GFLEAA---HDILDDMELAGHPMDSTTYKSLLTAYYKVKM 430
GE + D+++ + + G L A +I DM + P+ S TY S+++++ K
Sbjct: 140 GEDSFEIDMVNTYLSIFLAKGELSVACKLFEIFTDMGV--DPV-SYTYNSIMSSFVKKGY 196
Query: 431 FREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEM 490
F+EA ++L M K+ +++ V+ + + M ++DLA ++++++
Sbjct: 197 FKEAWSVLDAMGKTVNPADIATYNVIIQGLGK--------------MGRADLANAVLEKL 242
Query: 491 REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
+E I N+ I K I +A K++ +M+ I P V T+ L+ HS
Sbjct: 243 MKEGGYLDIVMYNTLINALGKAGRIDEANKLFEQMKASGINPDVVTYNTLIEVHS 297
>gi|255661052|gb|ACU25695.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 429
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + +NS W S+ + + GE + D+++ + + G L
Sbjct: 224 SSPYMDMLANKFTSYSQNS---WKPFSLARGVRVTAKGEGSFDLDMVNTYLSIFLAKGKL 280
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F+EA ++L + ++ +++ V+
Sbjct: 281 SVACKLFEIFTNMGVDPASYTYNSIMSSFVKRGYFKEAWSVLHALGETVYPADIATYNVI 340
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 341 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 386
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS +D
Sbjct: 387 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLKD 422
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREEAAYTMFLDLKRKGNNFVDGISYSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + A L+K +R LV +L
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWAGKLMKHIRDGNLVPDL 165
>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
Length = 321
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 79/197 (40%), Gaps = 22/197 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID + L A +IL +M GH + TY + L K +A AL + M
Sbjct: 86 LIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAM---- 141
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE--SLIQEMREEAALSTIYKLN 503
+E+ + D T L LAE SL+ EM + N
Sbjct: 142 -----------TEKKIRL-DVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYN 189
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+ + + CKG I +A K+++RM I P TF +V+G+ D +L +K
Sbjct: 190 AILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMK-- 247
Query: 564 IESGVLAVSRDLYETLL 580
S LA +Y TL+
Sbjct: 248 --SAGLAPREVIYNTLI 262
>gi|255661054|gb|ACU25696.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 429
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + +NS W S+ + + GE + D+++ + + G L
Sbjct: 224 SSPYMDMLANKFTSYSQNS---WKPFSLARGVRVTATGEGSFDLDMVNTYLSIFLAKGKL 280
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F EA ++L + ++ +++ V+
Sbjct: 281 SVACKLFEIFTNMGVDPASYTYNSIMSSFVKRGYFNEAWSVLHALGETVYPADIATYNVI 340
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 341 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 386
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS +D
Sbjct: 387 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLKD 422
Score = 45.8 bits (107), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREEAAYTMFLDLKRKGNNFVDGISYSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + A L+K +R LV +L
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWAGKLMKHIRDGNLVPDL 165
>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 520
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 115/285 (40%), Gaps = 26/285 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+NG K G+ LL +I+ + + + + S +ID L + ++ A+D+ +M
Sbjct: 121 LLNGLCKIGETRCAIKLLRTIE-DRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNAR 179
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM----------RKSCLVQNLSCEMVV--S 457
G D TY +L+ + EA LL +M + L+ L E V S
Sbjct: 180 GIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKES 239
Query: 458 ERFSEVADKSASFTDT---SSLMDKSDL------AESLIQEMREEAALSTIYKLNSSIYF 508
+ V K D S LMD L A+ + M + +Y N I
Sbjct: 240 KNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIING 299
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
CKGK + +A+ + R M + P T+ L+ G L R TIL D+ + +
Sbjct: 300 LCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLG--RITTIL--DLTKEMHHRG 355
Query: 569 LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ Y +LL + ++ + + MK++ + +K Y +
Sbjct: 356 QPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTA 400
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 152/375 (40%), Gaps = 52/375 (13%)
Query: 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD--AHSIII--LAQIHEMNCQRD 229
+P+T+I N ++ G K H + + G D ++ I++ L +I E C
Sbjct: 77 QPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIK 136
Query: 230 ELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLR 289
L+ + D+ + P Y + L K +D A +L +MN R P+
Sbjct: 137 LLRTIE---DRSTRPDVVMYSTIIDGLC----KDKLVDEAYDLYSEMNA-RGIFPD---- 184
Query: 290 QDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSN-RAMA 348
I L CG L +L+E +L E++L K ++ N
Sbjct: 185 ---------VITYTTLICGFCLA--GQLMEAFGLL-----NEMIL----KNINPNIYTYN 224
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
LI+ K GK E S LL++ + + + S ++D +G ++ A I M
Sbjct: 225 TLIDTLCKEGKVKE-SKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQ 283
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G D +Y ++ K K EA LL++M L +N+ + V +S + D
Sbjct: 284 TGVNPDVYSYNIIINGLCKGKRVDEAMNLLREM----LHKNMIPDTVT---YSSLIDGLC 336
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
++++D L +EM + + NS + CK + + A+ ++ +M+E
Sbjct: 337 KLGRITTILD-------LTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKER 389
Query: 529 KIRPTVETFYYLVYG 543
I+P T+ L+ G
Sbjct: 390 GIQPNKYTYTALIDG 404
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 78/192 (40%), Gaps = 15/192 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+ING K GK + + LL + ++ S +ID L +LG + D+ +M
Sbjct: 296 IINGLCK-GKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHR 354
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G P + TY SLL K + +A AL +M++ + N +++ A
Sbjct: 355 GQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPN---------KYTYTA----- 400
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D + ++L Q + + ++ I CK M +AL + +M++
Sbjct: 401 LIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNG 460
Query: 530 IRPTVETFYYLV 541
P TF ++
Sbjct: 461 CIPNAVTFEIII 472
>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
Length = 821
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 350 LINGYKKHGKN-SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
+++ Y K G++ +++ LL ++ F E T CS VI A + G L+ A ++
Sbjct: 250 MLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFT-CSTVISACGREGLLDEARKFFARLKS 308
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC--EMVVSERFSEVADK 466
G+ + TY SLL + K ++ EA ++LK+M K+ +L E+V + + ++
Sbjct: 309 EGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEE 368
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
A F DT M + + + I + K AL +R+M+
Sbjct: 369 GADFIDT----------------MIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMK 412
Query: 527 EMKIRPTVETF 537
E P V T+
Sbjct: 413 ESGCVPNVCTY 423
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 14/144 (9%)
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G+ D + S+L+ + K KM+ A +L+ +R+S L +L S
Sbjct: 625 GYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVT--------------YNS 670
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D + + E +++ +++ + N+ I FC+ ++ +A++ M
Sbjct: 671 LMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISG 730
Query: 530 IRPTVETFYYLVYGHSSLEMYRDI 553
IRP + T+ V G+S M+ ++
Sbjct: 731 IRPCIVTYNTFVAGYSGKGMFSEV 754
>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 101/245 (41%), Gaps = 29/245 (11%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
LE A ++ ++M+ +G T+ L+ A+ K EA LK+M+ L ++V
Sbjct: 193 LEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMK----FMGLEADLV 248
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
V F D L D ++L E+ E N+ I FCK +
Sbjct: 249 VYTSLIR------GFCDCGEL----DRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQL 298
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD-ITILWGDIKRNIESGVLAVSRD 574
+A +I+ M E +RP V T+ L+ G + ++ + +L I+++ E +
Sbjct: 299 KEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVT---- 354
Query: 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY---------KSEFLKHHKHLYRR 625
Y ++ + G +E++ MKK+ D + Y K + + K LY
Sbjct: 355 -YNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLM 413
Query: 626 LKVSN 630
LK S+
Sbjct: 414 LKDSS 418
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 110/260 (42%), Gaps = 36/260 (13%)
Query: 350 LINGYKKHGKNSELSWLL-LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
L+ G G E S LL L +K ++ + + +I L + L A DI D +
Sbjct: 393 LLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVE 452
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
D T LL + K +A L KQ+ S +V+N S+ ++ + D
Sbjct: 453 KLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRN-------SDTYTAMID--- 502
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
F T L ++A+ L+ +MR +++ N + CK + A +++ MQ
Sbjct: 503 GFCKTGML----NVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRD 558
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR-----DL--YETLLL 581
P V +F ++ G ++ GDIK + ES ++ +SR DL Y L+
Sbjct: 559 NNFPDVVSFNIMIDG----------SLKAGDIK-SAESLLVGMSRAGLSPDLFTYSKLIN 607
Query: 582 NFLQGGYFERVMEVIGYMKK 601
FL+ GY + E I + K
Sbjct: 608 RFLKLGYLD---EAISFFDK 624
>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62914, mitochondrial; Flags: Precursor
gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats. EST gb|AA728420 comes from this gene
[Arabidopsis thaliana]
gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 528
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 120/286 (41%), Gaps = 26/286 (9%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
++NG K G +++L+ LL+ + + S VID+L + + A ++ +ME
Sbjct: 222 GAVVNGLCKRG-DTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME 280
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC------------EMV 455
G + TY SL++ + +A LL M + + NL ++V
Sbjct: 281 NKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLV 340
Query: 456 VSER-FSEVADKS--------ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506
+E+ + E+ +S +S + ++D+ A+ +++ M + L + N+ I
Sbjct: 341 KAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLI 400
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566
FCK K + ++++R M + + T+ L++G RD K+ +
Sbjct: 401 NGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQA---RDCDNAQMVFKQMVSV 457
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
GV + Y LL + G + M V Y+++ M D Y
Sbjct: 458 GVHP-NILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYN 502
>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 657
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 120/292 (41%), Gaps = 31/292 (10%)
Query: 336 RNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC---SDVIDALIQ 392
++ +L ++ + +I G K G++ E L + S G C + +ID I+
Sbjct: 346 KDANILPTDTTLGIIIKGLCKAGRSFEGRDLF----NKFVSQGFVPTCMPYNTIIDGFIK 401
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
G + A ++ +M G + TY SL+ + K A LL M++ L ++
Sbjct: 402 EGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKA 461
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
+ + F + D + A L+ E+R + NS I F
Sbjct: 462 YGTLIDGFCKRRDMKS--------------AHELLNELRGAGLSPNRFIYNSMITGFKNM 507
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG-DIKRNIES-GVLA 570
+ +A+ +Y++M I ++T+ L+ G + + +L+ DI + S G+L
Sbjct: 508 NNVEEAIDLYKKMVNEGIPCDLKTYTSLIDG-----LLKSGRLLYASDIHTEMLSKGILP 562
Query: 571 VSRDLYETLLLNFL-QGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKH 621
R T+L+N L G FE +++ M +NM L+Y + H K
Sbjct: 563 DDR--AHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKE 612
>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
Length = 1048
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/286 (19%), Positives = 116/286 (40%), Gaps = 43/286 (15%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID L + G L A ++L++ME G D TY +LLT + +A +L+ M K
Sbjct: 182 LIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMK-- 239
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSL--------MDKSDL--------------- 482
++++ ++V +V K + + L +D +++
Sbjct: 240 --RSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRL 297
Query: 483 --AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
A+ M + + N+ I FCK +M+ + +K+++RM + T+ L
Sbjct: 298 YDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTL 357
Query: 541 VYGHSSLEMYR-DITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
++G+ + R + I + R + ++ + LL G E + M
Sbjct: 358 IHGYCQVGKLRVALDIFCWMVSRRVTPDIIT-----HCILLHGLCVNGEIESALVKFDDM 412
Query: 600 KKQNMYVDKLMY--------KSEFLKHHKHLYRRLKVSNARTEAQS 637
++ Y+ + Y K++ ++ L+ RL V + +A++
Sbjct: 413 RESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDART 458
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 134/332 (40%), Gaps = 60/332 (18%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDI 402
+ L+NG+ + + E L+ S+ FG + + VI+ L + L A ++
Sbjct: 676 TLGSLLNGFCQGNRFQEAVSLVDSMD----GFGFVPNVVIYNTVINGLCKNRDLNNALEV 731
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462
ME G D+ TY +L++ + +A LL+ M K + N+ F+
Sbjct: 732 FYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVI-------FFTA 784
Query: 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
+ D +F +L++ A +L +EM + + ++ NS I FC +GDA ++
Sbjct: 785 LID---TFVKEGNLLE----ARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMF 837
Query: 523 RRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITI--LWGDI------------- 560
M P V T+ L+ G ++++ ++T L GD
Sbjct: 838 DLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQA 897
Query: 561 -KRNIESGVL------AVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
K N+ V VS D+ Y LL G E+ + ++ ++K M VD + Y
Sbjct: 898 GKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITY 957
Query: 612 --------KSEFLKHHKHLYRRLKVSNARTEA 635
+++ LK L+R L + +A
Sbjct: 958 NIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDA 989
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 72/162 (44%), Gaps = 7/162 (4%)
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
EMV S+ + D + T T++L + + Q+M +Y I+ FC+
Sbjct: 61 EMVHSQPLPSIVDFTRLLTATANLR-RYETVIYFSQKMELYGISHDLYSFTILIHCFCRC 119
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD-ITILWGDIKRNIESGVLAV 571
+ AL + +M ++ P++ TF L++G + D +++ +K E V+
Sbjct: 120 SRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVV-- 177
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+Y TL+ + G +E++ M+K+ + D + Y +
Sbjct: 178 ---VYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNT 216
>gi|15240649|ref|NP_199839.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170477|sp|Q9FGR7.1|PP426_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g50280, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 1006; Flags: Precursor
gi|9759030|dbj|BAB09399.1| unnamed protein product [Arabidopsis thaliana]
gi|332008538|gb|AED95921.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 723
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/272 (18%), Positives = 114/272 (41%), Gaps = 21/272 (7%)
Query: 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
N A LI +K G++++ W + E + ++ + G E A I
Sbjct: 308 NVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQ 367
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
+ME G ++ Y +L+ AY K E E L +MR L + + ++ + ++
Sbjct: 368 TEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARR 427
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGD-ALKIY 522
+ D+ E+L++EM + + I + + K + D A +
Sbjct: 428 M--------------QPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAF 473
Query: 523 RRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI-KRNIESGVLAVSRDLYETLLL 581
RM+++ ++P+ ++ L++ +S + + ++ K I+ V + Y ++L
Sbjct: 474 LRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSV-----ETYTSVLD 528
Query: 582 NFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
F + G ++ME+ M ++ + ++ Y +
Sbjct: 529 AFRRSGDTGKLMEIWKLMLREKIKGTRITYNT 560
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 75/194 (38%), Gaps = 15/194 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI G + GK + S + ++ + TL S +ID L + G + AA I ME
Sbjct: 145 LIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTL-STMIDGLCKAGRIGAAVRIFKSMEAR 203
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + Y +L+ K + A +L QM+K+ + ++ + + D +A
Sbjct: 204 GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAA- 262
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
A + EM E +Y N I FCK A ++ M +
Sbjct: 263 -------------ARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSR 309
Query: 530 IRPTVETFYYLVYG 543
P V T+ L+ G
Sbjct: 310 CSPNVVTYGTLISG 323
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 30/234 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+++ L ++G LE A D+L + G D TY SL+ K K EA L K+M
Sbjct: 75 LLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRG 134
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L + C + + K A S+ + M + + + L++
Sbjct: 135 LALDTVCYTALIRGLLQAG--------------KIPQASSVYKTMTSQGCVPDVVTLSTM 180
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITILW- 557
I CK IG A++I++ M+ + P + L++G +LEM + +
Sbjct: 181 IDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 240
Query: 558 --GDIKRNI------ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
I NI +SG +A +R ++ +L + + + + G+ K N
Sbjct: 241 TPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGN 294
>gi|356558306|ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Glycine max]
Length = 1064
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 103/249 (41%), Gaps = 51/249 (20%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEH-------HSFGES------------------ 380
A ++NG KHG+ SE LL ++ + H + E
Sbjct: 372 AYNAVMNGLSKHGRTSEADELLKNVAADVITYSTLLHGYMEEENIPGILQTKRRLEESGI 431
Query: 381 ----TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEA 436
+C+ +I AL +G E + + M +S TY +++ Y KV EA
Sbjct: 432 SMDVVMCNVLIRALFMMGAFEDVYALYKGMPEMDLIPNSVTYCTMIDGYCKVGRIEEALE 491
Query: 437 LLKQMRKSCLVQNLSC-----EMVVSERFSEVADKSASFTDTSSL-MDKSD---LAESLI 487
+ + RK+ L+ +L+C + +E+A ++ + L +D L +++
Sbjct: 492 VFDEFRKT-LISSLACYNSIINGLCKNGMTEMAIEALLELNHEGLELDIGTFRMLTKTIF 550
Query: 488 QEMREEAALSTIYKL------------NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVE 535
+E + AL +Y++ N SI+ C+ ++ DA ++ M++ + T
Sbjct: 551 EENNTKKALDLVYRMEGLGPDIYSSVCNDSIFLLCQRGLLDDANHMWMMMKKKGLSVTCN 610
Query: 536 TFYYLVYGH 544
++Y ++ GH
Sbjct: 611 SYYSILRGH 619
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/189 (17%), Positives = 81/189 (42%), Gaps = 15/189 (7%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ ++ AL ++G + ++ ME G +D Y + Y + ++ E +++M
Sbjct: 198 CTALVGALCKMGRVGEVCGLVQWMEREGLGLDVVLYSAWACGYVEERVLGEVFGRMREMV 257
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
+ + + V+ + FS++ D SFT + +M +E
Sbjct: 258 EKGIGHDFVSYTVLVDGFSKLGDVEKSFT--------------FLAKMIKEGHRPNKVTY 303
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
++ + +CK + +A ++ M+++ I F L+ G + + + L+ +++R
Sbjct: 304 SAIMSAYCKKGKVEEAFGVFESMKDLGIDLDEYVFVILIDGFGRIGDFDKVFCLFDEMER 363
Query: 563 N-IESGVLA 570
+ I V+A
Sbjct: 364 SGISPSVVA 372
>gi|255661048|gb|ACU25693.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 429
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + +NS W S+ + + GE + D+++ + + G L
Sbjct: 224 SSPYMDMLANKFTSYSQNS---WKPFSLARGVRVTAKGEGSFDLDMVNTYLSIFLAKGKL 280
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F+EA ++L + ++ +++ V+
Sbjct: 281 SVACKLFEIFTNMGVDPASYTYNSIMSSFVKRGYFKEAWSVLHALGETVYPADIATYNVI 340
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 341 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 386
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS +D
Sbjct: 387 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLKD 422
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 12/163 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREEAAYTMFLDLKRKGNNFVDGISYSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERF-----SEVA 464
G +D T SLL Y+ + A L+K +R LV +L ER S+
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWAGKLMKHIRDGNLVPDLLKWQSAMERSMKAPQSKDK 184
Query: 465 DKSASFTDTSSLMD-------KSDLAESLIQEMREEAALSTIY 500
D + F + ++D KS+L+ + +E+ ++ S+ Y
Sbjct: 185 DFTPMFPSVNDIVDILNLRKTKSELSVDIQKEIEKDEWSSSPY 227
>gi|356551872|ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Glycine max]
Length = 945
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 51/287 (17%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+I GY + G+ + ++++E G T + +I + QLG + A D++ ME
Sbjct: 256 IITGYCQRGEIEQAQKYFDAMQEEGMEPGLVTW-NILIASYSQLGHCDIAMDLMRKMESF 314
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM----------------RKSCLVQNLSCE 453
G D T+ S+++ + + EA LL+ M V++LS
Sbjct: 315 GITPDVYTWTSMISGFTQKGRINEAFDLLRDMLIVGVEPNSITIASAASACASVKSLS-- 372
Query: 454 MVVSERFSEVADKSASFTDT---SSLMD----KSDL--AESLIQEMREEAALSTIYKLNS 504
+ +A K++ D +SL+D DL A+S+ M E +Y NS
Sbjct: 373 --MGSEIHSIAVKTSMVDDILIGNSLIDMYAKGGDLEAAQSIFDVMLER----DVYSWNS 426
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITILW 557
I +C+ G A +++ +MQE P V T+ ++ G +L ++ I
Sbjct: 427 IIGGYCQAGFCGKAHELFMKMQESDSPPNVVTWNVMITGFMQNGDEDEALNLFLRIEKD- 485
Query: 558 GDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
G IK N+ S + +L+ FLQ ++ +++ M+ NM
Sbjct: 486 GKIKPNVAS---------WNSLISGFLQNRQKDKALQIFRQMQFSNM 523
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 21/182 (11%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM- 441
C+ + +L ++G L A + + + G DS TY ++ Y KV EA LL +M
Sbjct: 475 CNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMI 534
Query: 442 RKSC-----LVQNLSCEMVVSERFSE---VADKSASFTDTSSLMDKSDLAESLIQEMREE 493
R C +V +L + + R E + D+ + +++ + L L +E R +
Sbjct: 535 RNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQ 594
Query: 494 AAL----STIYK--------LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
A+ S I K N+ + FCK + ALK++ +M M +P V T+ ++
Sbjct: 595 KAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVI 654
Query: 542 YG 543
YG
Sbjct: 655 YG 656
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 76/192 (39%), Gaps = 15/192 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+IDAL G LE A ++ M+ GH D Y +LL + + QM
Sbjct: 303 LIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADG 362
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ ++ ++ + + D +F + MR++ L ++ N+
Sbjct: 363 YMPDVVTFTILVDVLCKARDFDEAF--------------ATFDVMRKQGILPNLHTYNTL 408
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETF-YYLVYGHSSLEMYRDITILWGDIKRNI 564
I + I DALK+ M+ + ++PT T+ ++ Y S E + + + I
Sbjct: 409 ICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGI 468
Query: 565 ESGVLAVSRDLY 576
++A + LY
Sbjct: 469 VPNIVACNASLY 480
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 21/179 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I L++ G +E A +L ME G + TY + + K +A ++M+
Sbjct: 408 LICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKG 467
Query: 446 LVQNL-SCE-----------------MVVSERFSEVADKSASFT---DTSSLMDKSDLAE 484
+V N+ +C M R + +A S ++ S + + D A
Sbjct: 468 IVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAV 527
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+L+ EM + +NS I K + +A +++ RM++MK+ PTV T+ L+ G
Sbjct: 528 NLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSG 586
>gi|293334337|ref|NP_001169631.1| uncharacterized protein LOC100383512 [Zea mays]
gi|224030539|gb|ACN34345.1| unknown [Zea mays]
gi|413953501|gb|AFW86150.1| hypothetical protein ZEAMMB73_846563 [Zea mays]
Length = 790
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 19/211 (9%)
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
AG P + TY ++ + K + EA L +MR+ RF +
Sbjct: 272 AGAPPNQFTYTVVIGSLVKEDLLEEAVDLFGEMRR--------------RRFVPEEATYS 317
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
SS K + A L +EM+ + + Y S + CK + AL ++ M+
Sbjct: 318 LLISASSRHGKGEQALRLFEEMKGQGIAPSNYTCASLLALHCKNEDYPKALALFSDMESS 377
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588
K+ P + L+ + L +Y + +G+I++ +G+L Y + L G
Sbjct: 378 KVIPDEVIYGILIRIYGKLGLYEEARQTFGEIEK---AGLLN-DEQTYVAMAQVHLNAGD 433
Query: 589 FERVMEVIGYMKKQNMYVDKLMYKSEFLKHH 619
+R +EV+ MK + + + Y S L+ H
Sbjct: 434 CDRALEVLESMKTRGVKPSRFSY-SALLRCH 463
>gi|410110105|gb|AFV61132.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
aristata]
Length = 382
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/266 (18%), Positives = 116/266 (43%), Gaps = 29/266 (10%)
Query: 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
G+ L S++I+ +L A I ++ +G D Y +++ + K K+FREA +L
Sbjct: 3 GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSL 62
Query: 438 LKQMRKSCLVQN------LSCEMVVSERFSEVADKSASFTDTSSLMDKSDL--------- 482
+ +M+ + ++ N L V +++F E + + L+D +
Sbjct: 63 IGEMKAAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 122
Query: 483 ------AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
A+ L MR+ + N+ + + ++ G+A+ ++R MQ I V T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182
Query: 537 F--YYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVME 594
+ ++YG +LE + ++ R IE + Y T++ + + G +R
Sbjct: 183 YNSMMMIYG-KTLEHEKANNLIQEMQSRGIEPNSIT-----YSTIISIWGKVGKLDRAAM 236
Query: 595 VIGYMKKQNMYVDKLMYKSEFLKHHK 620
+ ++ + +D++++++ + + +
Sbjct: 237 LFQKLRSSGIEIDQILFQTMIVAYER 262
>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
Length = 845
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 100/237 (42%), Gaps = 25/237 (10%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK------SCLVQN 449
++ A D+ D M L G D +Y +L+ + EA L +M + + LV+
Sbjct: 204 VDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQPDMHMYAALVKG 263
Query: 450 LSCE-------MVVSERFSEVADKS-----ASFTDTSSLMDKSDLAESLIQEMREEAALS 497
L C +++ R E+ + A+ D K+ AE ++QEM E+
Sbjct: 264 L-CNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAP 322
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH-SSLEMYRDITIL 556
+ + I +CK + DAL++ M+ +P V T+ LV G + ++++ +T+L
Sbjct: 323 CVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLL 382
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ R AV+ Y L+ G+ E ++ M+ + D+ Y +
Sbjct: 383 --NKMRACGVNPDAVT---YNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNA 434
Score = 38.9 bits (89), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 83/222 (37%), Gaps = 22/222 (9%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G +E+A +L ME G D TY +L+ A K +A +L + + N
Sbjct: 408 GHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPN---- 463
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
A S + K+D+A +++M Y +S I CK K
Sbjct: 464 ----------AVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMK 513
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR 573
+ L M + ++P+ + +++ Y + WG++ + SG +
Sbjct: 514 GSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEM---VSSG---CNP 567
Query: 574 DL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
D+ Y T + + G V+ M K + VD + Y +
Sbjct: 568 DVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNT 609
>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 579
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 14/160 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID L +LG + + +++D+M G +D TY SLL A K +A L+K+++
Sbjct: 293 LIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQG 352
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ N+ + + K D A + QE+ E T++ N
Sbjct: 353 IQPNVCTYTTLIDGLC----KDGRLED----------AYVIFQEILTEGYHITVWTYNVM 398
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
I CK + +AL + RM++ P ++ ++Y S
Sbjct: 399 INGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALS 438
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 95/217 (43%), Gaps = 22/217 (10%)
Query: 331 ELVLFRNGKLLHSNR----AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDV 386
E +LF + + H + + A L+NG K G+ +L ++ + + S +
Sbjct: 98 EALLFHDHVVAHGFKLDQVSYAILMNGLCKMGETRAAMQML----RKTWVNADVVMYSTI 153
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL 446
ID+L + F+ A+ + +M G + T+ L+ A K + ++A LL M K +
Sbjct: 154 IDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGV 213
Query: 447 VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506
N VV+ + D L+++ + A ++ M +E ++ N I
Sbjct: 214 KPN-----VVT---------YGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIII 259
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
CK K + +A+ +++ M KI P V T+ L+ G
Sbjct: 260 NGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDG 296
>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
Length = 1035
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 25/200 (12%)
Query: 350 LINGYKKHGKNSELSWLLL-----SIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
+++GY G SE+ LL I HH F + A + G ++ A DI +
Sbjct: 349 MLHGYATKGALSEMHDLLNLMVANGISPNHHIF------NIFFSAYAKCGIIDKAMDIFN 402
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
M G D+ +Y +L+ A K+ +AE QM + + ++ ++VV FS
Sbjct: 403 KMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQM----INEGVTPDIVV---FS--- 452
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
S +DK + E L EM I N+ + CK + + ++
Sbjct: 453 ----SLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDS 508
Query: 525 MQEMKIRPTVETFYYLVYGH 544
++ M +RP V ++ L+ GH
Sbjct: 509 IECMGVRPDVISYNTLIDGH 528
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/230 (16%), Positives = 95/230 (41%), Gaps = 18/230 (7%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S VI+ G ++ +++ +M G P D TY +++ K ++F AEA+ +QM
Sbjct: 207 STVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMID 266
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ + N+ + + + K +++EM
Sbjct: 267 NGVKPNIDTYNCLIHGYLSIG--------------KWKEVVRMLEEMSAGGPKPNCCTYG 312
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
S + + CK +A + M I+P+V T+ +++G+++ ++ D+
Sbjct: 313 SLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMH----DLLNL 368
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + ++ + ++ + + G ++ M++ M++Q + D + Y +
Sbjct: 369 MVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGA 418
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 19/162 (11%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK----SCLVQNLSC 452
EA +L M G D+ +Y LL K EA LL M SC +S
Sbjct: 147 EAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSY 206
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
V++ F+E + D +L EM + + + I CK
Sbjct: 207 STVINGFFTE---------------GQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKA 251
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDIT 554
++ A ++++M + ++P ++T+ L++G+ S+ ++++
Sbjct: 252 QLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVV 293
>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
Length = 948
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 94/463 (20%), Positives = 181/463 (39%), Gaps = 77/463 (16%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
+ P T F + A R G + + ++ M++ G V DA ++ IH + C + +
Sbjct: 171 VPPTTFTFGVAARALCRLGRANEALALLRGMARHGCVPDA--VLYQTVIHAL-CDQGGVT 227
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLP-NPKLRQD 291
+ ++++ L+ + D + + R RE ++
Sbjct: 228 EAATLLNEML-------------LMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTK 274
Query: 292 AQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQ---ELVLFRNGKLLHSNRAMA 348
P +++ G LQ + + + D M G+ +VLF
Sbjct: 275 GCMPGVMTYG-------FLLQGLCRVRQADEARAMLGRVPELNVVLFNT----------- 316
Query: 349 KLINGYKKHGKNSELSWL-----LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
+I G GK +E + L L + + H++ S ++ L +LG + +A +L
Sbjct: 317 -VIGGCLAEGKLAEATELYETMGLKGCQPDAHTY------SILMHGLCKLGRISSAVRLL 369
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
+ME G + TY +L ++ K M+ + ALL++M L N S+ ++ +
Sbjct: 370 REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLN-------SQGYNGM 422
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
A D + D A LIQEMR + I N+ IY C + + +A ++
Sbjct: 423 I--YALCKD-----GRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE 475
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVL-AVSRDL--YETLL 580
+ E + T+ ++ H+ L R W D R + +L S D+ Y L+
Sbjct: 476 NLLEEGVVANGITYNTII--HALLRDGR-----WQDAVRLAKEMILHGCSLDVVSYNGLI 528
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK---SEFLKHHK 620
+ G +R + ++ M ++ + + + Y SE K +
Sbjct: 529 KAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERR 571
>gi|125525011|gb|EAY73125.1| hypothetical protein OsI_00999 [Oryza sativa Indica Group]
Length = 634
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 31/228 (13%)
Query: 330 QELV--LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVI 387
+ELV + + L S R ++ GY + G+ E + +K +S + +VI
Sbjct: 280 EELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMK-------DSGVLPNVI 332
Query: 388 --DALIQLGFLEA-----AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
+ L++ GFL+A D+L ME G D TY L A + + + +
Sbjct: 333 VFNTLLK-GFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDK 391
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
M ++ + + ++++ + + + AE L+++M +
Sbjct: 392 MIEAGIEPDPQVYSILAKGYVRA--------------QQPEKAEELLRQMGRLGVRPNVV 437
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548
+ I +C +G+A+++Y M++ +RP + TF L++G+S L+
Sbjct: 438 TFTTVISGWCSVADMGNAVRVYAAMRDAGVRPNLRTFETLIWGYSELK 485
>gi|46518477|gb|AAS99720.1| At2g19280 [Arabidopsis thaliana]
gi|62319953|dbj|BAD94048.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|110738808|dbj|BAF01327.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 693
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/259 (19%), Positives = 108/259 (41%), Gaps = 23/259 (8%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHH--SFGESTLCSDVIDALIQLGFLEAAHDILDD 405
+I+GY G+ + ++ K + S ST+ +I A + G + A + +
Sbjct: 412 TTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTI---LIGACSRFGSISDAESVFRN 468
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD 465
M+ G +D TY +L+ Y K + L+ +MR + + +++ ++
Sbjct: 469 MKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNIL--------- 519
Query: 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+ + D A +I E+ + + I F K +A ++ M
Sbjct: 520 -----IHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYM 574
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ 585
+++++P V T L++G+ + +L+ + +++G L LY TL+ +
Sbjct: 575 ADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKL---LDAG-LKPDVVLYNTLIHGYCS 630
Query: 586 GGYFERVMEVIGYMKKQNM 604
G E+ E+IG M ++ M
Sbjct: 631 VGDIEKACELIGLMVQRGM 649
>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 110/264 (41%), Gaps = 19/264 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K G+ + + +L + K+ T S ++D + + A + + + L
Sbjct: 270 LIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTS-LMDGYFLVKEVNKAKHVFNTISLR 328
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + +Y ++ K KM EA L K+M ++N++ V + KS
Sbjct: 329 GVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMH----LKNMTPNTVTYSSLIDGLCKSGR 384
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
+D L+D E+ + I NS + CK + A+ + +M++
Sbjct: 385 ISDVWDLID----------EINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEG 434
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
I+P + T+ LV G +D ++ D+ + G ++ +Y ++ + G+F
Sbjct: 435 IQPDMSTYTTLVDGLCKNGRLKDAQRIYQDL---LCKG-YPLNIRMYTVMINGLCKEGFF 490
Query: 590 ERVMEVIGYMKKQNMYVDKLMYKS 613
+ + ++ M+ D + Y++
Sbjct: 491 DEALSLLSQMEDNGCMPDAVTYET 514
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESG 567
FCK K++ DA +Y M KI P V TF L+YG + ++ L ++ N+
Sbjct: 204 FCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPN 263
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
V + L+ + G ++ V+ M KQ + + + Y S
Sbjct: 264 VYT-----FNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTS 304
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 24/163 (14%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID L + G + D++D++ G P + TY SLL K +A ALL +M+
Sbjct: 373 SSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKD 432
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ ++S + + K+ D A+ + Q++ L Y LN
Sbjct: 433 EGIQPDMSTYTTLVDGLC----KNGRLKD----------AQRIYQDL-----LCKGYPLN 473
Query: 504 SSIYF-----FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+Y CK +AL + +M++ P T+ L+
Sbjct: 474 IRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLI 516
>gi|115435438|ref|NP_001042477.1| Os01g0228400 [Oryza sativa Japonica Group]
gi|17385740|dbj|BAB78680.1| putative leaf protein [Oryza sativa Japonica Group]
gi|113532008|dbj|BAF04391.1| Os01g0228400 [Oryza sativa Japonica Group]
gi|215740499|dbj|BAG97155.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 636
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 31/228 (13%)
Query: 330 QELV--LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVI 387
+ELV + + L S R ++ GY + G+ E + +K +S + +VI
Sbjct: 280 EELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMK-------DSGVLPNVI 332
Query: 388 --DALIQLGFLEA-----AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
+ L++ GFL+A D+L ME G D TY L A + + + +
Sbjct: 333 VFNTLLK-GFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDK 391
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
M ++ + + ++++ + + + AE L+++M +
Sbjct: 392 MIEAGIEPDPQVYSILAKGYVRA--------------QQPEKAEELLRQMGRLGVRPNVV 437
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548
+ I +C +G+A+++Y M++ +RP + TF L++G+S L+
Sbjct: 438 TFTTVISGWCSVADMGNAVRVYAAMRDAGVRPNLRTFETLIWGYSELK 485
>gi|255661124|gb|ACU25731.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 431
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 18/179 (10%)
Query: 378 GESTLCSDVIDALIQL----GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE 433
GE + D+++ + + G L A + + G S TY S+++++ K F+E
Sbjct: 260 GEDSFDIDMVNTYLSIFLAKGKLSVACKLFEIFTNXGVDPVSYTYNSIMSSFVKKGYFKE 319
Query: 434 AEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE 493
A +L M ++ +++ V+ + + M ++DLA +++ ++ +E
Sbjct: 320 AWGVLHAMGETVYPADIATYNVIVQGLGK--------------MGRADLANAVLDKLMKE 365
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
I N+ I K I +A K++++M+ I P V T+ L+ HS +D
Sbjct: 366 GGYLDIVMYNTLINALGKAGRIBEANKLFQQMKASGINPDVVTYNTLIEVHSKAGRLKD 424
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 5/157 (3%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + LE A ++++ME
Sbjct: 65 LIDGLYKNGREEAAYTMFLDLKRKGNNFVDGITYSIVILHLCREDQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-----SCEMVVSERFSEVA 464
G +D T SLL Y+ + E L+K +R LV +L + E + S+
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWTERLMKHIRDGNLVPSLLKWKSAMESSMRSPQSKKR 184
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYK 501
D + F S ++D +L +S ++ + + I K
Sbjct: 185 DFTPMFPSVSDVVDILNLTKSADTKIDDGLGVEDIEK 221
>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 775
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 120/292 (41%), Gaps = 31/292 (10%)
Query: 336 RNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC---SDVIDALIQ 392
++ +L ++ + +I G K G++ E L + S G C + +ID I+
Sbjct: 464 KDANILPTDTTLGIIIKGLCKAGRSFEGRDLF----NKFVSQGFVPTCMPYNTIIDGFIK 519
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
G + A ++ +M G + TY SL+ + K A LL M++ L ++
Sbjct: 520 EGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKA 579
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
+ + F + D + A L+ E+R + NS I F
Sbjct: 580 YGTLIDGFCKRRDMKS--------------AHELLNELRGAGLSPNRFIYNSMITGFKNM 625
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG-DIKRNIES-GVLA 570
+ +A+ +Y++M I ++T+ L+ G + + +L+ DI + S G+L
Sbjct: 626 NNVEEAIDLYKKMVNEGIPCDLKTYTSLIDG-----LLKSGRLLYASDIHTEMLSKGILP 680
Query: 571 VSRDLYETLLLNFL-QGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKH 621
R T+L+N L G FE +++ M +NM L+Y + H K
Sbjct: 681 DDR--AHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKE 730
>gi|255661108|gb|ACU25723.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 431
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 14/138 (10%)
Query: 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTS 474
S TY S+++++ K F+EA +L M ++ +++ ++ + +
Sbjct: 301 SYTYNSIMSSFVKKGYFKEAWGVLHAMGETVYPADIATYNLIIQGLGK------------ 348
Query: 475 SLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
M ++DLA++++ + E I N+ I K I +A K++ +M+E I P V
Sbjct: 349 --MGRADLAKAVLDTLMTEGGYLDIVMYNTLINALGKAGRIDEANKMFAQMKESGINPDV 406
Query: 535 ETFYYLVYGHSSLEMYRD 552
T+ L+ HS +D
Sbjct: 407 VTYNTLIQAHSKAGQLKD 424
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + LE A ++++ME
Sbjct: 65 LIDGLYKNGREEAAYTMFLDLKRKGNNFVDGITYSIVILHLCRDHQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + E L+K +R LV +L
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWTERLMKHIRDGNLVPSL 165
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 25/238 (10%)
Query: 313 IMPELLEKDSILKM---EGKQELVLFRNGKLLHSN------RAMAKLINGYKKHGKNSEL 363
++P ++ +++++ EG+ E L G L+ SN R +LI G+ K K+
Sbjct: 385 LVPSVVTYNALIRGYCEEGRIEAALEILG-LMESNNCRPNERTYNELICGFSKR-KHVHK 442
Query: 364 SWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423
+ LLS E + +I + G ++A+ +LD ++ G D TY +
Sbjct: 443 AMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFID 502
Query: 424 AYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLA 483
K K EA L +++ + N EV + D K D A
Sbjct: 503 TLCKSKRMEEACDLFNSLKEKGIKAN------------EVM--YTALIDGHCKAGKIDEA 548
Query: 484 ESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
SL++ M E L NS IY CK + + L + M +M ++PTV T+ L+
Sbjct: 549 ISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILI 606
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 58/288 (20%), Positives = 124/288 (43%), Gaps = 28/288 (9%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
+ ++N Y K G E + + I + S T S +I + + +A+ + +
Sbjct: 216 TLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTS-LILGYCRNNDVNSAYKVFNM 274
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV------SER 459
M G + +Y +++ + E +L K+MR+ + V+ ++R
Sbjct: 275 MPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDR 334
Query: 460 -------FSEVADKSA-----SFTDTSSLMDKS---DLAESLIQEMREEAALSTIYKLNS 504
F+E+ ++S ++T M K D + ++ EM E+ + ++ N+
Sbjct: 335 NLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNA 394
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE-MYRDITILWGDIKRN 563
I +C+ I AL+I M+ RP T+ L+ G S + +++ +T+L +
Sbjct: 395 LIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLL----SKM 450
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ES L S Y +L+ + G+F+ +++ +K+ + D+ Y
Sbjct: 451 LESK-LTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTY 497
Score = 38.9 bits (89), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 14/159 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I + G +EAA +IL ME + TY L+ + K K +A LL +M +S
Sbjct: 395 LIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESK 454
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L +L V V K+ F D A L+ ++E + + +
Sbjct: 455 LTPSL----VTYNSLIHVQCKAGHF----------DSAYKLLDLLKENGLVPDQWTYSVF 500
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
I CK K + +A ++ ++E I+ + L+ GH
Sbjct: 501 IDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGH 539
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 108/278 (38%), Gaps = 21/278 (7%)
Query: 337 NGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL 396
NG A + LI G K G+ E L ++ E+ + + ++D L + L
Sbjct: 294 NGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMR-ENSCEPDVVTFTALMDGLCKGDRL 352
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
+ A +L+ ME + TY SL+ K R+A+ + K+M +V+ + +V
Sbjct: 353 QEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRM----IVRGIEPNVVT 408
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
S + + D A L++EM L I N+ I CK
Sbjct: 409 YN----------SLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAP 458
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDL 575
+A +++ M+ P V T+ L+ G LE L+ D +K+ + V+ S
Sbjct: 459 EANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFS--- 515
Query: 576 YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
TL+ + G + ++ M + D Y S
Sbjct: 516 --TLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTS 551
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 27/200 (13%)
Query: 350 LINGYKKHGKNSELSWLLLSIKK---EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
L++G ++G E LL +++ + F TL + L + G ++ A + +D
Sbjct: 237 LLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTL----MAGLCKTGKIDMALKVFEDN 292
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
P D Y +L+ K EA L ++MR++ SCE V
Sbjct: 293 SNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMREN------SCEPDV---------- 336
Query: 467 SASFTDTSSLMDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
+FT + K D A+ +++ M + + +S I CK + DA ++++
Sbjct: 337 -VTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFK 395
Query: 524 RMQEMKIRPTVETFYYLVYG 543
RM I P V T+ L++G
Sbjct: 396 RMIVRGIEPNVVTYNSLIHG 415
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 100/252 (39%), Gaps = 27/252 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID L + G + A ++ M + G + TY SL+ + A L+++M
Sbjct: 375 SSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTA 434
Query: 444 S-CLVQNLSCEMVV-----SERFSEV----ADKSASFTDTSSL-----------MDKSDL 482
+ CL ++ ++ + R E D A F + + +++ D+
Sbjct: 435 TGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDM 494
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A +L +M ++A L + ++ + +C ++ DA ++ M P V T+ LV
Sbjct: 495 ARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVD 554
Query: 543 GHSSL-EMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
G + M +L KR + V+ Y L+ F + G ++ M
Sbjct: 555 GFCKVGRMVEARRVLKRMAKRGCQPNVVT-----YTALIDAFCRAGKPTVAYRLLEEMVG 609
Query: 602 QNMYVDKLMYKS 613
+ + + Y+S
Sbjct: 610 NGVQPNVITYRS 621
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 108/287 (37%), Gaps = 30/287 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LING+ K K ++LLL KE S VI + ++ A+ + M
Sbjct: 167 LINGFCKVHK-VHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVEN 225
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS----------------CLVQNLSCE 453
G + TY +LL+ + + EA LL +MR+ C +
Sbjct: 226 GCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMA 285
Query: 454 MVVSERFSEVADKSASFTDTSSLM------DKSDLAESLIQEMREEAALSTIYKLNSSIY 507
+ V E S D S+L+ + D A L ++MRE + + + +
Sbjct: 286 LKVFEDNSN-GDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMD 344
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIES 566
CKG + +A ++ M++ P V T+ L+ G RD ++ I R IE
Sbjct: 345 GLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEP 404
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
V+ Y +L+ F + + ++ M D + Y +
Sbjct: 405 NVVT-----YNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNT 446
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 80/216 (37%), Gaps = 17/216 (7%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +++ G ++ A +L++M + D TY SL+ + KV EA +LK+M K
Sbjct: 515 STLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAK 574
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
N+ + + F K +A L++EM +
Sbjct: 575 RGCQPNVVTYTALIDAFCRAG--------------KPTVAYRLLEEMVGNGVQPNVITYR 620
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
S I FC + +A KI R+ E + F Y V R L ++
Sbjct: 621 SLIGGFCGTGDLEEARKILERL-ERDENCKADMFAYRVMMDGLCRTGRMSAAL--ELLEA 677
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
I+ D+Y L+ QG + MEV+ M
Sbjct: 678 IKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEM 713
Score = 38.9 bits (89), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR--K 443
VI L + G L+ A ++L++M +G D+ Y ++ A K + +A + M K
Sbjct: 65 VIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEK 124
Query: 444 SCLVQNLSCE-MVVSERFSEVADKSASFTDTSSLMD---------------KSDLAESLI 487
+ + + + + + R E A ++ + K A L+
Sbjct: 125 NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 184
Query: 488 QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+EM+E + ++ I+ FC+ + A K++R+M E P + T+ L+ G
Sbjct: 185 KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSG 240
>gi|15224753|ref|NP_179518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334184304|ref|NP_001189552.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546774|sp|Q6NKW7.2|PP164_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g19280
gi|3135258|gb|AAC16458.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251769|gb|AEC06863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251770|gb|AEC06864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 693
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/259 (19%), Positives = 108/259 (41%), Gaps = 23/259 (8%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHH--SFGESTLCSDVIDALIQLGFLEAAHDILDD 405
+I+GY G+ + ++ K + S ST+ +I A + G + A + +
Sbjct: 412 TTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTI---LIGACSRFGSISDAESVFRN 468
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD 465
M+ G +D TY +L+ Y K + L+ +MR + + +++ ++
Sbjct: 469 MKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNIL--------- 519
Query: 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+ + D A +I E+ + + I F K +A ++ M
Sbjct: 520 -----IHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYM 574
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ 585
+++++P V T L++G+ + +L+ + +++G L LY TL+ +
Sbjct: 575 ADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKL---LDAG-LKPDVVLYNTLIHGYCS 630
Query: 586 GGYFERVMEVIGYMKKQNM 604
G E+ E+IG M ++ M
Sbjct: 631 VGDIEKACELIGLMVQRGM 649
>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 756
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 25/195 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID L + + A DI D ME+ G S TY +L+ K K EA L+ QM
Sbjct: 483 LIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEG 542
Query: 446 LVQNLSCEMVVSERFSEVAD--KSASFTDTSSL-------------------MDKSDLAE 484
L + + + F + D ++A +L + D+A
Sbjct: 543 LKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVAS 602
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET----FYYL 540
L++ ++ + + T N I CK K +A++++R M E P V T F L
Sbjct: 603 KLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGL 662
Query: 541 VYGHSSLEMYRDITI 555
G ++ D T+
Sbjct: 663 CNGGGPIQEAVDFTV 677
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 95/251 (37%), Gaps = 25/251 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I L +LG ++ A +IL M ++ TY +L+ K A L + +
Sbjct: 341 NSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTS 400
Query: 444 S----------------CLVQNLSCEMVVSERFSEVADKSASFTDT---SSLMDKSDLAE 484
CL N M + E E FT + SL + L E
Sbjct: 401 KGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKE 460
Query: 485 SL--IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
+L ++EM + N+ I CK +GDA I+ +M+ + + + T+ L+
Sbjct: 461 ALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLIN 520
Query: 543 GHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602
G + + L + I G L + Y T+L F Q G +R +++ M
Sbjct: 521 GLCKSKRVEEAAQLMDQM---IMEG-LKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLN 576
Query: 603 NMYVDKLMYKS 613
D + Y +
Sbjct: 577 GCEPDIVTYGT 587
>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
Length = 457
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 31/171 (18%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREA-EALLKQMR 442
S V+D L +LG + A +++ M AG D TY SL+ K EA EA+ +
Sbjct: 297 STVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAM 356
Query: 443 KSCLVQNLS-CEMV----VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAAL- 496
+ C ++ C +V R +E AE +++EM
Sbjct: 357 EGCKPNAVTYCSLVHGLCSCGRLAE--------------------AERMVEEMSSGGGGG 396
Query: 497 ----STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
++ N+ I CK I DALK ++RM+ P ++ +V G
Sbjct: 397 DHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEG 447
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 86/219 (39%), Gaps = 23/219 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G + KN E++ LL + + ++D L + G L+ A +L+ M+ +
Sbjct: 158 LISGCCRE-KNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKAS 216
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS----------------CLVQNLSCE 453
G D Y S + K A +L+QMR S C +
Sbjct: 217 GCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTA 276
Query: 454 MVVSERFSEVADKSASFTDTSSLMD------KSDLAESLIQEMREEAALSTIYKLNSSIY 507
+ + E+ + + S+++D ++ A S+++ M + +S +
Sbjct: 277 LEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVN 336
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546
CK I +A++ R M +P T+ LV+G S
Sbjct: 337 GLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCS 375
>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 530
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 24/237 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S VID+L + G + AHD+ +M AG ++ T+ SL+ + K + + QM++
Sbjct: 286 SIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKR 345
Query: 444 -SCLVQNLSCEMVV-----SERFSE------------VADKSASFTDT-SSLMDKSDL-- 482
C +S ++ E E VA +++F + + D+
Sbjct: 346 LGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNG 405
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A + +M+E + N + F K I LK+ + M E ++ P V T+ L+
Sbjct: 406 AHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILIL 465
Query: 543 GHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
+ + L +K +E L + +YET+L G ++ E++ M
Sbjct: 466 MFCEKGHWNNAYNL---MKEMVEEKCLKPNLSIYETVLELLRNAGQLKKHEELVEKM 519
>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Brachypodium distachyon]
Length = 801
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 7/188 (3%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDM-ELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
+ST + +I L + G ++ A + D+M E HP TY +L+ Y+ M EA L
Sbjct: 423 DSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPT-VMTYNALIDGLYRAGMLEEARML 481
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSA--SFTDTSSLMDKSDLAESLIQEMREEAA 495
+M + N S + ++ ++V D + D + A L++ + E
Sbjct: 482 FHKME---MGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGV 538
Query: 496 LSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITI 555
+ + N+ I CK K + AL++++ +Q I P T+ L+ G D T+
Sbjct: 539 VPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATM 598
Query: 556 LWGDIKRN 563
L+ +I R+
Sbjct: 599 LFQNILRS 606
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 83/215 (38%), Gaps = 22/215 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L++ G+ + LL S+K+ E T + + L + G ++ A + ++
Sbjct: 255 LLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTY-TVFLSGLCKAGRVDEAFHRFELLQDG 313
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + Y L+ ++ F E + +M + +++ ++ RF+E +
Sbjct: 314 GFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDA 373
Query: 470 FTDTSSLMDKS---------------------DLAESLIQEMREEAALSTIYKLNSSIYF 508
F + DK D A+SL+ EM + + N I
Sbjct: 374 FLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICG 433
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
CK +I A++++ M E PTV T+ L+ G
Sbjct: 434 LCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDG 468
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 74/194 (38%), Gaps = 15/194 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LIN K G + +L+ L K + + +ID L LG L A D+L +ME A
Sbjct: 401 LINALCKVG-DPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESA 459
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G P + TY +++ K EAE + QM + +N A +
Sbjct: 460 GCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN--------------AITFNT 505
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D + D A LI +M E NS + +CK I A I + M
Sbjct: 506 LIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANG 565
Query: 530 IRPTVETFYYLVYG 543
V T+ L+ G
Sbjct: 566 FEVDVVTYGTLING 579
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 102/269 (37%), Gaps = 29/269 (10%)
Query: 350 LINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
LINGY K G+ L ++ I + + ++ L Q G + A ++D M
Sbjct: 261 LINGYCKLGRVEDALGYIQQEIANGFEP--DQITYNTFVNGLCQNGHVGHALKVMDVMVQ 318
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKS 467
GH D TY ++ K EA+ +L QM + CL + ++
Sbjct: 319 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLI----------- 367
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGD---ALKIYRR 524
+ + L + DLA +++ + +Y N I CK +GD AL+++
Sbjct: 368 VALCSGNRLEEALDLA----RQVTLKGLSPDVYTFNILINALCK---VGDPQLALRLFEE 420
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
M+ P T+ L+ SL D+ + +ES S Y T++
Sbjct: 421 MKSSGCTPDEVTYNTLIDNLCSLGKLGKAL----DLLKEMESAGCPRSTVTYNTIIDGLC 476
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ E EV M Q + + + + +
Sbjct: 477 KKMRIEEAEEVFDQMDLQGISRNAITFNT 505
>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 108/264 (40%), Gaps = 19/264 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
++NG K G + +L+ LL+ + + + +ID+L + +E A D+ +ME
Sbjct: 227 GTVVNGLCKRG-DIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEME 285
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G + TY SL+ + +A LL M + + N VV+ F+ + D
Sbjct: 286 TKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPN-----VVT--FNALID-- 336
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+F L++ L E +IQ + ++ +N FC + +A ++++ M
Sbjct: 337 -AFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLING----FCMHNRLDEAKQMFKFMVS 391
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
P ++T+ L+ G + D L+ R + L + Y T++ F Q G
Sbjct: 392 KDCLPNIQTYNTLINGFCKCKRVEDGVELF----REMSQRGLVGNTVTYTTIIQGFFQAG 447
Query: 588 YFERVMEVIGYMKKQNMYVDKLMY 611
+ V M + D + Y
Sbjct: 448 DCDSAQMVFKQMVSNRVPTDIMTY 471
>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 754
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/294 (19%), Positives = 120/294 (40%), Gaps = 29/294 (9%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
SN ++ +++G+ K G+ + + + + F + + +++ L + G ++ A +I
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEI 317
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVS---- 457
+D M G+ D TY S+++ K+ +EA +L QM + C ++ ++S
Sbjct: 318 MDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCK 377
Query: 458 -ERFSEVADKSASFTDTSSLMD---------------KSDLAESLIQEMREEAALSTIYK 501
+ E + + T L D +A L +EMR + +
Sbjct: 378 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFT 437
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
N I C + +AL + ++M+ +V T+ L+ G R+ ++ +++
Sbjct: 438 YNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEME 497
Query: 562 RNIESGVLAVSRD--LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
V VSR+ Y TL+ + E +++ M + DK Y S
Sbjct: 498 ------VHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNS 545
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 80/386 (20%), Positives = 156/386 (40%), Gaps = 43/386 (11%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
PD FN +++ + G IM++M Q G D ++ + C+ E+K+
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYT---YNSVISGLCKLGEVKEA 349
Query: 235 KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQK 294
+DQ+ T Y +L+S K + ++ A EL + + LP+ +
Sbjct: 350 VEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTS-KGILPDVCTFNSLIQ 408
Query: 295 PYLISIGSPNLRCGLKL--QIMPELLEKDSI--------LKMEGK--QELVLFRNGKLLH 342
++ N R ++L ++ + E D L +GK + L + + +L
Sbjct: 409 GLCLT---RNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465
Query: 343 SNRAMAK---LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEA 398
R++ LI+G+ K K E + + E H +++ + +ID L + +E
Sbjct: 466 CARSVITYNTLIDGFCKANKTREAEEIFDEM--EVHGVSRNSVTYNTLIDGLCKSRRVED 523
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE 458
A ++D M + G D TY SLLT + + ++A +++ M + CE
Sbjct: 524 AAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSN------GCE----- 572
Query: 459 RFSEVADKSASFTDTSSL--MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
D T S L + ++A L++ ++ + T + N I + +
Sbjct: 573 -----PDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTT 627
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVY 542
+A+ ++R M E P Y +V+
Sbjct: 628 EAINLFREMLEQNEAPPDAVSYRIVF 653
>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 134/332 (40%), Gaps = 60/332 (18%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDI 402
+ L+NG+ + + E L+ S+ FG + + VI+ L + L A ++
Sbjct: 151 TLGSLLNGFCQGNRFQEAVSLVDSMD----GFGFVPNVVIYNTVINGLCKNRDLNNALEV 206
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462
ME G D+ TY +L++ + +A LL+ M K + N+ F+
Sbjct: 207 FYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVI-------FFTA 259
Query: 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
+ D +F +L++ A +L +EM + + ++ NS I FC +GDA ++
Sbjct: 260 LID---TFVKEGNLLE----ARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMF 312
Query: 523 RRMQEMKIRPTVETFYYLVYG-------HSSLEMYRDITI--LWGDI------------- 560
M P V T+ L+ G ++++ ++T L GD
Sbjct: 313 DLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQA 372
Query: 561 -KRNIESGVL------AVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
K N+ V VS D+ Y LL G E+ + ++ ++K M VD + Y
Sbjct: 373 GKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITY 432
Query: 612 --------KSEFLKHHKHLYRRLKVSNARTEA 635
+++ LK L+R L + +A
Sbjct: 433 NIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDA 464
>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 870
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 77/374 (20%), Positives = 141/374 (37%), Gaps = 64/374 (17%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
I+P+ +N+V+ R L + +M+LM GV D + L + C + ++
Sbjct: 359 IEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGY---CSKGKVF 415
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDA 292
+ K ++++ H +LL+ +K A E++ MN
Sbjct: 416 EAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMN--------------- 460
Query: 293 QKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKL-I 351
+K Y + + N+ L RNG+L ++ ++++
Sbjct: 461 EKSYQLDTVTCNIVVN------------------------GLCRNGELEKASEVVSEMWT 496
Query: 352 NGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG- 410
+G GK + ++ L+ SI + + + +I+ L ++G LE A +M
Sbjct: 497 DGTNSLGKENPVAGLVNSIHNVSTNVPDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNL 556
Query: 411 HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASF 470
HP DS TY + + + K A +LK M ++ C + S +
Sbjct: 557 HP-DSVTYDTFVLNFCKQGKISSALRVLKDMERN------GCSKTLQTYNSLIL------ 603
Query: 471 TDTSSLMDKSDLAE--SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
L K + E L+ EMRE I N+ I C+G DA + M +
Sbjct: 604 ----GLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDATSLLHEMLDK 659
Query: 529 K-IRPTVETFYYLV 541
+ P V +F L+
Sbjct: 660 GVVSPNVSSFKILI 673
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 478 DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ---EMKI-RPT 533
D +D AE L++ M E+ L + NS I C+ + +A +I+R MQ E+ + +P
Sbjct: 233 DMNDEAEKLVERMTEKGLLPDVVTFNSRISALCRAGKVFEASRIFRDMQMDGELGLPKPN 292
Query: 534 VETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
V TF ++ G M + L +K+ G VS + Y T LL L+ G
Sbjct: 293 VVTFNLMLKGFCQEGMMEEARSLVETMKK----GGNFVSLESYNTWLLGLLRNG 342
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 107/284 (37%), Gaps = 56/284 (19%)
Query: 332 LVLFRNGKLLHSNRAMAKLI-NGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDAL 390
L L RNGKLL + +++ NG I+ +S+ + V+D L
Sbjct: 336 LGLLRNGKLLEGRSVLDEMVENG----------------IEPNIYSY------NIVMDGL 373
Query: 391 IQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQN 449
+ + A ++D M G D+ TY +LL Y EA+A+L +M RK C
Sbjct: 374 CRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNT 433
Query: 450 LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFF 509
+C +++ + E + AE ++Q+M E++ N +
Sbjct: 434 YTCNTLLNSLWKE---------------GRKSEAEEMLQKMNEKSYQLDTVTCNIVVNGL 478
Query: 510 CKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVL 569
C+ + A ++ M G +SL + L I N+ + V
Sbjct: 479 CRNGELEKASEVVSEM--------------WTDGTNSLGKENPVAGLVNSI-HNVSTNVP 523
Query: 570 AVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
V Y TL+ + G E + M +N++ D + Y +
Sbjct: 524 DVI--TYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDT 565
>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic [Vitis vinifera]
Length = 929
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 29/183 (15%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY-----------YKVKMFREA 434
+I L++ +E A +ILD+M LAG + TY +++ Y Y K+ E
Sbjct: 610 LILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEG 669
Query: 435 --------EALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD----KSDL 482
EALLK KS +Q+ + V+ S +F + L+D + D+
Sbjct: 670 LELDVYTYEALLKACCKSGRMQSA---LAVTREMSSQKIPRNTFV-YNILIDGWARRGDV 725
Query: 483 AES--LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
E+ L+Q+M++E I+ S I CK + A K + M+ + ++P ++T+ L
Sbjct: 726 WEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTL 785
Query: 541 VYG 543
++G
Sbjct: 786 IHG 788
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/229 (18%), Positives = 97/229 (42%), Gaps = 20/229 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++D +G E + D ++ G +Y L+ Y K+ +A + K M +
Sbjct: 435 MMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAG 494
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ N+ ++ F + D + +F ++ +++ ++ + N+
Sbjct: 495 IKHNMKTYSMLINGFVRLKDWANAF--------------AVFEDVVKDGLKPDVVLYNNI 540
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS-SLEMYRDITILWGDIKRNI 564
I FC + A++ + MQ+ + RPT TF +++G + S +M R + I D+ R
Sbjct: 541 IRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIF--DMMR-- 596
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
SG + + L+L ++ E+ +E++ M + ++ Y +
Sbjct: 597 WSGCIPTVH-TFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTT 644
>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
Length = 595
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 81/400 (20%), Positives = 151/400 (37%), Gaps = 59/400 (14%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTG--VVADAHSIIILAQIHEMNCQRDE 230
+KPD + + ++L+ + G +++ MS G V D I IL + + C+
Sbjct: 162 VKPDVVTYGILLNGLCKSGHVGDALKVLDRMSSPGSDVCPD---IAILNTVVDGLCKIGR 218
Query: 231 LKKFKCYIDQL------STPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLP 284
L++ ++D+ P A Y ++ + DI A +++ M + E +
Sbjct: 219 LQQAIIFVDERMRHVHGCAPNAVTYNCLADAFC----RVGDIGMACKIVARMEK--EGVA 272
Query: 285 NPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSN 344
+ + L +G R G L+ EK ++ R + +S
Sbjct: 273 PNVITMNTIIGGLCRVG----RVGAALEF---FREKRTVWPEA--------RGNAVTYST 317
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
A A L H N +++ L +H ++ + +I L Q G L A
Sbjct: 318 LASAFL------HCNNVDMAMELFHEMADHGHRPDAVMYFTMISGLTQAGRLLDACTTAA 371
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
M+ AG +D+ Y L+ + + K EA LL++M+ L ++ + +
Sbjct: 372 SMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAG 431
Query: 465 DKSASFTDTSSLMD---------------------KSDLAESLIQEMREEAALSTIYKLN 503
D SA ++D K+D A + + M E N
Sbjct: 432 DFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYN 491
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ I F CK + + A+K++ M+E + V T+ L+ G
Sbjct: 492 TLIDFLCKSREVDVAIKLFDEMREKNVPANVTTYNALLKG 531
>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
Length = 927
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 29/183 (15%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY-----------YKVKMFREA 434
+I L++ +E A +ILD+M LAG + TY +++ Y Y K+ E
Sbjct: 589 LILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEG 648
Query: 435 --------EALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD----KSDL 482
EALLK KS +Q+ + V+ S +F + L+D + D+
Sbjct: 649 LELDVYTYEALLKACCKSGRMQSA---LAVTREMSSQKIPRNTFV-YNILIDGWARRGDV 704
Query: 483 AES--LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
E+ L+Q+M++E I+ S I CK + A K + M+ + ++P ++T+ L
Sbjct: 705 WEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTL 764
Query: 541 VYG 543
++G
Sbjct: 765 IHG 767
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/229 (18%), Positives = 97/229 (42%), Gaps = 20/229 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++D +G E + D ++ G +Y L+ Y K+ +A + K M +
Sbjct: 414 MMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAG 473
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ N+ ++ F + D + +F ++ +++ ++ + N+
Sbjct: 474 IKHNMKTYSMLINGFVRLKDWANAF--------------AVFEDVVKDGLKPDVVLYNNI 519
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS-SLEMYRDITILWGDIKRNI 564
I FC + A++ + MQ+ + RPT TF +++G + S +M R + I D+ R
Sbjct: 520 IRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIF--DMMR-- 575
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
SG + + L+L ++ E+ +E++ M + ++ Y +
Sbjct: 576 WSGCIPTVH-TFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTT 623
>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 925
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 18/163 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ VI+AL + G + A I++ + +G D+ TY S++ Y + + A + +M +
Sbjct: 232 NSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDE 291
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL--IQEMREEAALSTIYK 501
CE + + T + L + + E+L I EM L T++
Sbjct: 292 E------GCE----------PNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHT 335
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ I C I DA KI+ M++ +P V T+ L+ G
Sbjct: 336 FTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQ 378
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 102/248 (41%), Gaps = 27/248 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI+ L + G A + ++M G D+TTY +LL + F EA+ + M
Sbjct: 261 VINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRG 320
Query: 446 LVQNL---SCEMVVSERFSEVADKSASFTD--TSSLMDKSDLAESLIQ------------ 488
+ +L S + VS R + F D TS L+ + + LI
Sbjct: 321 VSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEAL 380
Query: 489 ----EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+M E+ + N+ + CK K++ DA ++ M E + P TF L++GH
Sbjct: 381 EIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGH 440
Query: 545 -SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
M + +++ ++NI+ ++ Y L+ F + E+ E+ M +
Sbjct: 441 CKEGNMGKALSLFGIMTQKNIKPDIVT-----YNILIDGFCKTTEMEKANELWNEMISRK 495
Query: 604 MYVDKLMY 611
++ + + Y
Sbjct: 496 IFPNHISY 503
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 134/311 (43%), Gaps = 33/311 (10%)
Query: 313 IMPELLEKDSILKMEGK-----QELVLFRNGK---LLHSNRAMAKLINGYKKHGKNSELS 364
+ P+L+ S++ + + Q L+ FR+ K L+ N LINGY ++G SE
Sbjct: 321 VSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEA- 379
Query: 365 WLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSL 421
L I+ + G + + +++ L + L A+ + D+M G D T+ +L
Sbjct: 380 ---LEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTL 436
Query: 422 LTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSD 481
+ + K +A +L M + +N+ ++V ++ + D F T+ + ++
Sbjct: 437 IHGHCKEGNMGKALSLFGIMTQ----KNIKPDIVT---YNILID---GFCKTTEMEKANE 486
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
L +I +S +N +C + +A +++ M I+PT+ T ++
Sbjct: 487 LWNEMISRKIFPNHISYAILVNG----YCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVI 542
Query: 542 YGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
G+ D++ + + I GV Y TL+ F++G Y ++ +I M+
Sbjct: 543 KGYCR---SGDLSKADEFLGKMISEGV-GPDSITYNTLINGFVKGEYMDKAFFLINKMET 598
Query: 602 QNMYVDKLMYK 612
+ + D + Y
Sbjct: 599 KGLQPDVVTYN 609
>gi|357499665|ref|XP_003620121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495136|gb|AES76339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 408
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A L++E+ E+ + + I CK K++ DA +Y M ++ P V T+ ++Y
Sbjct: 138 ALRLLKEVNEKIVQYDVVMYTAIINGLCKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIY 197
Query: 543 GHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
G + +D L+ D+K N+E+ + TL+ F + G V+ M K
Sbjct: 198 GFCVVGRLKDAIGLFNDMKLENVEA-----DEYTFNTLVSAFCKEGNVREGKAVVAVMMK 252
Query: 602 QNMYVDKLMYKS 613
+ + D + Y S
Sbjct: 253 EGVKPDIITYNS 264
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 15/203 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+I G+ G+ + L +K E+ E T + ++ A + G + ++ M
Sbjct: 195 MIYGFCVVGRLKDAIGLFNDMKLENVEADEYTF-NTLVSAFCKEGNVREGKAVVAVMMKE 253
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM---------RKSCLVQNLSCEMVVSERF 460
G D TY SL+ Y VK +A+ + M R L Q + C+ ++ +
Sbjct: 254 GVKPDIITYNSLMDGYCLVKEVDKAKNIFNTMVQRGVTANVRTMNLFQEMHCKEIIPDTI 313
Query: 461 SEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALK 520
+ +S D + A L+ EM + I NS +Y CK + +
Sbjct: 314 A-----YSSLIDGFCKSGRIPQALELVDEMHDRGQPPNIITYNSILYALCKIHHVEKTIA 368
Query: 521 IYRRMQEMKIRPTVETFYYLVYG 543
+ R+++ I+P T+ L G
Sbjct: 369 LLRKIKVKGIQPDAYTYTILTNG 391
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 90/447 (20%), Positives = 159/447 (35%), Gaps = 101/447 (22%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
P + ++++A G ++ ++ M + G + H+ +L + C+ +++ +
Sbjct: 297 PTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLI---DGLCKENKMDEA 353
Query: 235 KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQK 294
+ + ++S Y +L+ + K ID A E ILD+ PN + +
Sbjct: 354 RKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFE-ILDLMESNSCGPNTRTYNE--- 409
Query: 295 PYLISIGSPNLRCGL----KLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKL 350
L CGL K+ LL K +E K L L+H + L
Sbjct: 410 ----------LICGLCKKRKVHKAMALLNK----MLERKLSPSLITYNSLIHGQCKVNDL 455
Query: 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG 410
+ Y+ LLS+ E+ + S ID L + G +E A + D ++ G
Sbjct: 456 ESAYR-----------LLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG 504
Query: 411 HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASF 470
+ Y +L+ Y KV
Sbjct: 505 VKANEVIYTALIDGYCKV------------------------------------------ 522
Query: 471 TDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI 530
K D+A SL++ M +A L Y N I CK K + +A + +M M +
Sbjct: 523 -------GKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGV 575
Query: 531 RPTVETFYYLVYGHSSLEMYRD------ITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
+PTV T+ L+ EM +D + + + + V Y L +
Sbjct: 576 KPTVVTYTILIG-----EMLKDGAFDHALKVFNHMVSLGYQPDVCT-----YTAFLHAYF 625
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMY 611
G E V +VI M ++ + D + Y
Sbjct: 626 SQGMLEEVDDVIAKMNEEGILPDLVTY 652
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 80/419 (19%), Positives = 161/419 (38%), Gaps = 67/419 (15%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD--AHSIIILAQIHEMNCQRDE 230
+ P + +N ++H + ++ LM++ G+V D +S+ I + C+
Sbjct: 435 LSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFI-----DTLCKEGR 489
Query: 231 LKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDM-------NRYREPL 283
+++ D + + Y +L+ + K ID A L+ M N Y +
Sbjct: 490 VEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNV 549
Query: 284 PNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHS 343
L ++ + S+ + L G+K ++ +IL E + ++G H+
Sbjct: 550 LIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTY-----TILIGE------MLKDGAFDHA 598
Query: 344 NRAMAKLIN-GYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
+ +++ GY+ + + + A G LE D+
Sbjct: 599 LKVFNHMVSLGYQP----------------------DVCTYTAFLHAYFSQGMLEEVDDV 636
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK----------SCLVQNLSC 452
+ M G D TY L+ Y ++ + A LK M S L++NLS
Sbjct: 637 IAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSH 696
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
E + E SE+ S S T + ++A L ++M E + + I FC+
Sbjct: 697 ENRMKETRSEIGIDSVSNT------LEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQ 750
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV 571
+ + +A + M+E + P+ + + L+ L +Y + L + +E+G+L +
Sbjct: 751 ERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRL---VDAMVENGLLPL 806
>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
Length = 821
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 84/189 (44%), Gaps = 16/189 (8%)
Query: 350 LINGYKKHGKN-SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
+++ Y K G++ +++ LL ++ + F E T CS VI A + G L+ A + ++
Sbjct: 250 MLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFT-CSTVISACGREGLLDEAKEFFVGLKS 308
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G+ + TY +LL + K ++ EA +++K+M + N + V ++
Sbjct: 309 QGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDN----NCPPDAVTYNELVAAYVRAG 364
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ + ++L+D M E + I + + + AL +Y +M+E
Sbjct: 365 FYEEGAALIDT----------MTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKES 414
Query: 529 KIRPTVETF 537
P V T+
Sbjct: 415 GCAPNVCTY 423
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
AE +++E++ S + N+ I FC+ ++ +AL+ M IRP + T+ V
Sbjct: 684 AEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVG 743
Query: 543 GHSSLEMYRDI 553
G+++ M+ +I
Sbjct: 744 GYAAKGMFAEI 754
>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like, partial [Brachypodium distachyon]
Length = 907
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 17/199 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+INGY K G+ E+ LL + + + E + + ++D + GF+ A + D M
Sbjct: 311 MINGYCKLGRMGEVEKLLQANEYRGVNLDEYSY-NTLVDGYCRKGFMTKAFETCDMMVRN 369
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVSERFSEVADKSA 468
G + TY +LL + +A L M K +V N +SC ++ F
Sbjct: 370 GFTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLKRGVVPNEISCSTLLDGFFKA------ 423
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
K++ A +L +E + +N+ I CK + + +A +++ RM+E
Sbjct: 424 ---------GKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMTEAEELFHRMKEW 474
Query: 529 KIRPTVETFYYLVYGHSSL 547
T+ L+ G+ L
Sbjct: 475 SCPCDSLTYRTLIDGYCKL 493
Score = 42.7 bits (99), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 21/196 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI L +LG + A ++ +D+++ G D+ TY SL+ A L +M +
Sbjct: 652 VILGLCKLGRVADARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLSAR 711
Query: 446 LVQNL------------SCEM---------VVSERFSEVADKSASFTDTSSLMDKSDLAE 484
L N+ SC + + S+ S A + D + A
Sbjct: 712 LTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTTEAF 771
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
L Q+M +E T++ I+ C + +A+K+ +M E + P T++ L+ G+
Sbjct: 772 KLKQKMIKEGIQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITYWTLIQGY 831
Query: 545 SSLEMYRDITILWGDI 560
+ + IT L+ ++
Sbjct: 832 ARCGNMKAITKLYNEM 847
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 12/135 (8%)
Query: 481 DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
DLA L EM I NS IY CK + A+ ++ ++Q I P T+ L
Sbjct: 698 DLAFGLRDEMLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTL 757
Query: 541 VYGH----SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVI 596
+ GH ++ E ++ + IK I+ V Y L+ GY E ++++
Sbjct: 758 IDGHCKDGNTTEAFK---LKQKMIKEGIQPTVFT-----YTILIHGLCTQGYMEEAIKLL 809
Query: 597 GYMKKQNMYVDKLMY 611
M + N+ + + Y
Sbjct: 810 DQMIENNVDPNFITY 824
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 20/221 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAG-HPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
S +I + G E A + ++M G HP + T+ L+ A K EA LLK M
Sbjct: 277 SSIIHGMCHTGRWEGAKGLFNEMVDEGVHP-NVVTFNVLIDALCKAGKMEEANHLLKLM- 334
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
+ S + D L + D A L M + +
Sbjct: 335 -------------IQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSY 381
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
N I +CK + +A K+YR M +I PTV T+ L+ G RD L+G++K
Sbjct: 382 NVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKV 441
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
+ L Y LL + + ME+ Y++ +
Sbjct: 442 H----DLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHD 478
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 127/308 (41%), Gaps = 46/308 (14%)
Query: 350 LINGYKKHGKNSELSWLL-LSIKKEHH--SFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
LI+ K GK E + LL L I++ +F +TL ID G ++ A D+ M
Sbjct: 314 LIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTL----IDGFCLEGRIDDARDLFVSM 369
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVSERFSE--- 462
E G D+ +Y L+ Y K EA+ L ++M K + ++ +++ F E
Sbjct: 370 ESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKV 429
Query: 463 -----------VADKSASFTDTSSLMD----KSDLAES--LIQEMREEAALSTIYKLNSS 505
V D + + L+D + L+E+ L + +I N
Sbjct: 430 RDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCL 489
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEMYRDITILWGDIKR 562
I CK + I A +++ R+ + P V T+ +++G LE +D+ +
Sbjct: 490 IDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFL------- 542
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDK--------LMYKSE 614
+E A + + TL+ F Q ++V+E++ M +++ D L+ K E
Sbjct: 543 GMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDE 602
Query: 615 FLKHHKHL 622
+ + HL
Sbjct: 603 KYREYLHL 610
>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
Length = 786
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 392 QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
+LG +E A +++ G+ D + S+L+ Y K M+ + + +++S LS
Sbjct: 574 RLGGIEKA---FQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQS----GLS 626
Query: 452 CEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK 511
+++ S D + +S AE ++ +++ + N+ I FCK
Sbjct: 627 PDLITYN----------SLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCK 676
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+I +A +I M + P V T++ LV G++SLEM+ +
Sbjct: 677 QGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSE 717
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
GF E A LD M G ++ TY +++TAY + EA AL QM+KS V N++
Sbjct: 328 GFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVN 385
>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Cucumis sativus]
Length = 942
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 94/224 (41%), Gaps = 28/224 (12%)
Query: 334 LFRNGKLLHSNRAMAKL--INGYKKHGKNSEL---SWLLLSIKKEHHSFGESTLCSDV-- 386
L+R+GK+ +N + ++ I+ H + EL L +K SFG+ + +
Sbjct: 686 LYRHGKIDEANLILHQIADIDPIAAHAHSVELPKSDLRHLETQKIVDSFGKKAMSIPISN 745
Query: 387 -------IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK 439
I L + ++ IL D+ L G D+ TY SL+ A V EA L
Sbjct: 746 NIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRD 805
Query: 440 QMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499
M + LV N+ VV KS + D A L ++ + T+
Sbjct: 806 DMINAGLVPNI----VVYNALINGLCKSGNL----------DRARRLFNKLARKGLSPTV 851
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
N+ I +CKG +AL++ +M+E I P+ T+ L++G
Sbjct: 852 VTYNTLIDGYCKGGRTTEALELKDKMREEGICPSSITYSTLIHG 895
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 117/267 (43%), Gaps = 25/267 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKK---EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
LINGY K G ++ + +L+S+K + S+G +TL +D + A + D+M
Sbjct: 402 LINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTL----LDGFCKQEDFIKAFKLCDEM 457
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
G TY +LL + V A + M K + N + + F +V
Sbjct: 458 HNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVG-- 515
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+F D + ++ K L++ + + T+Y N+ I FCK + + A +I+ +M+
Sbjct: 516 --TF-DRAMMIWKDALSKGFTKSI-------TLY--NTMICGFCKMEKLVQAQEIFLKMK 563
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586
E+ P T+ L+ G+ + + L K E ++ S ++Y +L+ +
Sbjct: 564 ELGFPPDEITYRTLIDGYCKVGNLVEALKL----KDMSERDGISSSTEMYNSLITGVFRS 619
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKS 613
+++ ++ MK + + + + Y S
Sbjct: 620 EELQKLNGLLAEMKNRELSPNVVTYGS 646
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 108/286 (37%), Gaps = 19/286 (6%)
Query: 328 GKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVI 387
K+ L L + ++R LI GY K G+ E + L+ E + F + + +I
Sbjct: 310 AKKVLALMSEKGIPENSRTYTLLIKGYCKRGQ-MEQAEKLIGCMMEKNLFVDEHVYGVLI 368
Query: 388 DALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLV 447
A G ++ A I D M G M++ SL+ Y K+ +A +L M+ L
Sbjct: 369 HAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLK 428
Query: 448 QNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIY 507
+ + + F + D +F L EM + T+ N+ +
Sbjct: 429 PDSYGYNTLLDGFCKQEDFIKAF--------------KLCDEMHNKGVNFTVVTYNTLLK 474
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESG 567
+ AL I+ M + + P T+ L+ + + ++W D S
Sbjct: 475 NLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDAL----SK 530
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
S LY T++ F + + E+ MK+ D++ Y++
Sbjct: 531 GFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRT 576
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 6/140 (4%)
Query: 474 SSLMDKSDLAESLI--QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR 531
S+L+ + ++L+ ++M L I+ + +CK + +A + M+
Sbjct: 229 SNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCE 288
Query: 532 PTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFER 591
P V T+ L+ G+ SL D+ + E G+ SR Y L+ + + G E+
Sbjct: 289 PNVVTYNSLIDGYVSLG---DVCGAKKVLALMSEKGIPENSRT-YTLLIKGYCKRGQMEQ 344
Query: 592 VMEVIGYMKKQNMYVDKLMY 611
++IG M ++N++VD+ +Y
Sbjct: 345 AEKLIGCMMEKNLFVDEHVY 364
>gi|357494871|ref|XP_003617724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519059|gb|AET00683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 861
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 15/193 (7%)
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
++ING K KN E ++ + + K+ F + + + VI +G L A + +M
Sbjct: 276 EIINGLLKRRKNDE-AFRVFNDLKDRGYFPDRVMYTTVIKGFCDMGLLAEARKLWFEMIQ 334
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G + TY ++ Y KV+ F EA L M +N VVS +
Sbjct: 335 KGLVPNEYTYNVMIYGYCKVRDFAEARKLYDDMCGRGYAEN-----VVS---------YS 380
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ L K+D A SL EM + + NS I C+ + A + ++
Sbjct: 381 TMISGLYLHGKTDEALSLFHEMSRKGIARDLISYNSLIKGLCQEGELAKATNLLNKLLIQ 440
Query: 529 KIRPTVETFYYLV 541
+ P+V +F L+
Sbjct: 441 GLEPSVSSFTPLI 453
>gi|326514834|dbj|BAJ99778.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 609
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S ++D L + G A+ + +ME G + TY +L+ + +K + E+ LL ++
Sbjct: 310 SALVDGLCRAGRFSEAYALFREMEKIGAAPNHVTYCTLIDSLWKARRGSESHGLLGEVVS 369
Query: 444 SCLVQNLSCEMVVSE------RFSEVAD------------KSASFT---DTSSLMDKSDL 482
+V +L + + + EV D ++T D D
Sbjct: 370 RGVVMDLVMYTSLMDWLGKQGKIDEVKDMFHCALSDNHTPNGVTYTVLIDALCRAGNVDG 429
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
AE ++ EM +++ + +S I K ++G A R+M+E I P V T+ ++
Sbjct: 430 AEQMLLEMEDKSVHPNVVTFSSIINGLTKQGLLGKAADYMRKMKERGIDPNVVTYGTVMD 489
Query: 543 G-------HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEV 595
G S+L++Y ++ + +E V++ + + L+ + G E +
Sbjct: 490 GFFKCQEQESALDLYHEM------LCEGVE-----VNKFIVDLLVNGLRKNGKMEEAEAL 538
Query: 596 IGYMKKQNMYVDKLMYKS 613
M K+ M +D + Y +
Sbjct: 539 FRDMNKRGMLLDHVNYTT 556
>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g64583, mitochondrial; Flags: Precursor
gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
Length = 512
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 117/288 (40%), Gaps = 43/288 (14%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID L + G L A ++L++ME G D TY +LLT + +A +L+ M K
Sbjct: 180 NTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMK 239
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSL--------MDKSDL------------- 482
++++ ++V +V K + + L +D +++
Sbjct: 240 ----RSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHG 295
Query: 483 ----AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFY 538
A+ M + + N+ I FCK +M+ + +K+++RM + T+
Sbjct: 296 RLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYN 355
Query: 539 YLVYGHSSLEMYR-DITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIG 597
L++G+ + R + I + R + ++ + LL G E +
Sbjct: 356 TLIHGYCQVGKLRVALDIFCWMVSRRVTPDIIT-----HCILLHGLCVNGEIESALVKFD 410
Query: 598 YMKKQNMYVDKLMY--------KSEFLKHHKHLYRRLKVSNARTEAQS 637
M++ Y+ + Y K++ ++ L+ RL V + +A++
Sbjct: 411 DMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDART 458
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 72/162 (44%), Gaps = 7/162 (4%)
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
EMV S+ + D + T T++L + + Q+M +Y I+ FC+
Sbjct: 61 EMVHSQPLPSIVDFTRLLTATANL-RRYETVIYFSQKMELYGISHDLYSFTILIHCFCRC 119
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD-ITILWGDIKRNIESGVLAV 571
+ AL + +M ++ P++ TF L++G + D +++ +K E V+
Sbjct: 120 SRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVV-- 177
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+Y TL+ + G +E++ M+K+ + D + Y +
Sbjct: 178 ---VYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNT 216
>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
Length = 545
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 116/274 (42%), Gaps = 29/274 (10%)
Query: 313 IMPELLEKDSILKMEGKQELV-----LFRNGKLLHSNRAMAK---LINGYKKHGKNSELS 364
I P+++ +++ GKQ V LF + + + +I+G K G+
Sbjct: 236 IYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENAL 295
Query: 365 WLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424
L + +E H + S +I+ L E A+++ ++M G D TY +LL
Sbjct: 296 TLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDG 355
Query: 425 YYKVKMFREAEALLKQMRKSCLVQ-NLSCEMVVSERFSEV-----ADKSASFTDTSSLMD 478
K +A + ++M + N+ V+ +RF +V A K A + SL+
Sbjct: 356 LCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLP 415
Query: 479 KSDLAESLIQEMREEAALSTIYKL---------------NSSIYFFCKGKMIGDALKIYR 523
+ ++IQ++ +E+ + ++L N+ + +CK I DA K++
Sbjct: 416 DAVTFTTVIQKLCKESRIDEAHELFESIGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHD 475
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
RM + PT+ T+ LV G Y D I++
Sbjct: 476 RMLDSGCAPTLATYTALVTGFCRTGRYSDALIMY 509
>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
Length = 455
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 25/200 (12%)
Query: 350 LINGYKKHGKNSELSWLLL-----SIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
+++GY G SE+ LL I HH F + A + G ++ A DI +
Sbjct: 1 MLHGYGNKGALSEMHDLLNLMVANGISPNHHIF------NIFFSAYAKCGMIDKAMDIFN 54
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
M G D+ +Y +L+ A K+ +AE QM + N+ VV FS +
Sbjct: 55 KMRQHGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNI----VV---FSSLV 107
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
S +DK + E L EM I N+ + CK + + ++
Sbjct: 108 YGLCS-------IDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDS 160
Query: 525 MQEMKIRPTVETFYYLVYGH 544
++ M +RP V ++ L+ GH
Sbjct: 161 IECMGVRPDVISYNTLIDGH 180
>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 809
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-----RKSCLV--- 447
L+ A IL +ME G D Y +L++ Y V +A AL +M + +C++
Sbjct: 305 LKEAESILREMEKQGFAPDVYVYCALISGYCMVGNLLKALALHDEMVSKGVKTNCVILSS 364
Query: 448 --QNLSCEMVVSE---RFSEVADKSASFTDT--SSLMD------KSDLAESLIQEMREEA 494
Q LS + SE +F E F + + +MD K + A L+ EM+ +
Sbjct: 365 ILQGLSQMGMASEVANQFKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEMKGKK 424
Query: 495 ALSTIYKLNSSIY-FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
+ I + I +F KGK++ DAL IYR M+++ +P + T+ L G S
Sbjct: 425 MVPDIINYTTVISGYFLKGKVV-DALNIYREMKDIGHKPDIVTYNVLAGGFS 475
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 9/182 (4%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S VI AL Q G +E A + + + G D TY ++ Y ++ +EA +L M+
Sbjct: 604 SKVIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKN 663
Query: 444 SCLVQNLSCEMVVSERFSEVADKSA-----SFTDTSSLMDKSDLAESLIQEMREEAALST 498
+ ++ V+ S++ +S+ + ++MD S +L EM++
Sbjct: 664 RGIEPDVITYTVLLNNCSKIDLRSSSSSLDAMKSKENMMDPS----ALWSEMKDMDIKPD 719
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG 558
+ I CK I DA+ ++ M + + P T+ L+ G+ ++ + +L+
Sbjct: 720 VICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCNVGNIKKAVVLFD 779
Query: 559 DI 560
++
Sbjct: 780 EM 781
>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 772
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 99/229 (43%), Gaps = 20/229 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ ++D+ + G ++ A ++L +M+ G + TY L+ K +A+ L+++M
Sbjct: 219 NTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLN 278
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
S L N+S + ++ + + F ++ DL E EM A T+ N
Sbjct: 279 SGL--NVS-----AYTYNPLIN---GFCQKGLFVEAFDLVE----EMVNRRAFPTLSTYN 324
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-R 562
+ +Y CK + + M + K P + +F L+YG+ + +L+ ++K R
Sbjct: 325 TLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCR 384
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
++ V+ Y TL+ GY + + + M Q ++ D Y
Sbjct: 385 DLVPTVIT-----YNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTY 428
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 27/177 (15%)
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL 446
+ AL Q G E A D+L++M G D TY S++ + K R+A + +M
Sbjct: 502 VHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLS--- 558
Query: 447 VQNLSCEMVVSERFSEVADKSASFT---DTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
VA ++T + DLA +M E++ + + N
Sbjct: 559 --------------KGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYN 604
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV-------YGHSSLEMYRDI 553
+ I C + + +A K + M+E I P ++ L+ Y +L +YR++
Sbjct: 605 AIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREM 661
>gi|414865591|tpg|DAA44148.1| TPA: hypothetical protein ZEAMMB73_616668 [Zea mays]
Length = 838
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 87/225 (38%), Gaps = 18/225 (8%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+D++ L G + A LD M G D TY + + KV A L +
Sbjct: 545 CTDMVQQLCLSGRITEALQFLDGMLELGFLPDIVTYSAAMNGMCKVGDIENALGLFLDIS 604
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
C + ++ ++ F + K D A+ +++EM + L ++
Sbjct: 605 SKCYLPDVVAHNILINGFRKAG--------------KFDEAQEIMEEMLSKGMLPSVVTY 650
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
N I +CK I A+ +M + + PTV T+ L+ G + + +LW ++
Sbjct: 651 NLMIDIWCKSGSIDKAITCVYKMIDEEKPPTVVTYTSLLDGLCNAGRPDEAIVLWCKMR- 709
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
E G + + Y L+ + G E + MK + +D
Sbjct: 710 --EKGC-SPNGIAYTALVNGLCKCGRMETAVNYYEEMKTKGFDLD 751
>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 831
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 66/385 (17%), Positives = 154/385 (40%), Gaps = 48/385 (12%)
Query: 162 LSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQI 221
+S + NG ++PDT++FN +++A G+ + I E M ++G A + L +
Sbjct: 377 ISKVQKNG---LRPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKG 433
Query: 222 HEMNCQRDELKKFKCYI--DQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRY 279
+ + +E + + D++ P ++ + I+ A ++ M +
Sbjct: 434 YGKIGKLEESSRLLEMMLRDEMLQPNDRTCNILVQAWCNQR----KIEEAWNIVYKMQSF 489
Query: 280 REPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGK 339
P+ + Y IGS C + I+P +L + K
Sbjct: 490 GVK-PDAVTFNTLARAYS-RIGS---TCTAEDMIIPRML------------------HNK 526
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
+ + R ++NGY + GK E +K E + + +I + + ++
Sbjct: 527 VKPNVRTCGTIVNGYCEEGKMEEALRFFYRMK-ELGVHPNLFVFNSLIKGFLNINDMDGV 585
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
+++D ME G D T+ +L+ A+ V + E + + M + + ++ ++++
Sbjct: 586 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHAFSILAKG 645
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
++ + + AE ++ +MR+ + I +C + A+
Sbjct: 646 YARAGE--------------PEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAM 691
Query: 520 KIYRRMQ-EMKIRPTVETFYYLVYG 543
++Y +M+ + + P + T+ L++G
Sbjct: 692 QVYNKMRGSVGLSPNLTTYETLIWG 716
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 113/271 (41%), Gaps = 35/271 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI GY K GK E S LL + ++ C+ ++ A +E A +I+ M+
Sbjct: 430 LIKGYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSF 489
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAE-ALLKQMRKSCLVQNL-SCEMVVSERFSEVADKS 467
G D+ T+ +L AY ++ AE ++ +M + + N+ +C +V+ E
Sbjct: 490 GVKPDAVTFNTLARAYSRIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEE----- 544
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
K + A M+E ++ NS I F + ++ M+E
Sbjct: 545 ----------GKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEE 594
Query: 528 MKIRPTVETFYYLVYGHSSL-------EMYRDITILWGDIKRNIESGVLAVSRDLYETLL 580
++P V TF L+ SS+ E+YRD +L G I +I + + L
Sbjct: 595 FGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRD--MLEGGIDPDIHA---------FSILA 643
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ + G E+ +++ M+K + + ++Y
Sbjct: 644 KGYARAGEPEKAEQILNQMRKFGVRPNVVIY 674
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 28/196 (14%)
Query: 380 STLCSDV------IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE 433
T C DV ++ LI+ G + AH I + + GH TY +L+TA + K F
Sbjct: 313 GTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSIITYTTLVTALTRQKHFHS 372
Query: 434 AEALLKQMRKSCL----------------VQNLSCEMVVSERFSEVADKSASFTDTSSL- 476
+L+ +++K+ L NL M + E+ E K + T + +
Sbjct: 373 LLSLISKVQKNGLRPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIK 432
Query: 477 ----MDKSDLAESLIQEM-REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR 531
+ K + + L++ M R+E N + +C + I +A I +MQ ++
Sbjct: 433 GYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSFGVK 492
Query: 532 PTVETFYYLVYGHSSL 547
P TF L +S +
Sbjct: 493 PDAVTFNTLARAYSRI 508
>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 525
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 63/303 (20%), Positives = 116/303 (38%), Gaps = 28/303 (9%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ING K G + L I+ + F S ++D+L + G L A + M
Sbjct: 116 GTIINGLCKVGDTAGAISYLEKIEGRNRGFDLLIAYSTIMDSLCKDGMLCLALNFFSGMT 175
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D Y SL+ + EA LL M + ++ N+ V+ + F +
Sbjct: 176 CKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEG--- 232
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
K A++++ M + NS I C + DA+K++ M
Sbjct: 233 -----------KISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIH 281
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
+ P V T+ L++G R+I + + +G L + + TL+ F + G
Sbjct: 282 KGLLPNVVTYSSLIHGWCKT---RNINKAIFVLDEMVNNG-LNLDVVTWSTLIGGFCKAG 337
Query: 588 YFERVMEVIGYMKKQN---------MYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSK 638
E +E+ M + + + +D L +K +F L+R+++ N +
Sbjct: 338 RPEAAIELFCTMHEHHQLPNLQTCAIILDGL-FKCQFHSEAISLFRKMEKMNLELNIVTY 396
Query: 639 RLV 641
+V
Sbjct: 397 NIV 399
>gi|168014765|ref|XP_001759922.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689052|gb|EDQ75426.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
E+ D + + + + LAESL EMR +IY N+ + +G+ + AL++
Sbjct: 266 ELQDAFNALINAAGQAGQHKLAESLFSEMRNLGLRLSIYTFNALLRAVVEGRGVSHALRV 325
Query: 522 YRRMQEMKIRPTVETFYYLVYGHS 545
R M+ + +RP TF L+ G+S
Sbjct: 326 VRSMEAVGVRPDTHTFTTLLDGYS 349
>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 664
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 21/224 (9%)
Query: 326 MEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD 385
ME K LV + L+ GY + GK + LL +KK + ++ +
Sbjct: 286 MEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASF-TI 344
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
+I + + ++ A I +M+ +G D TY +L++ + K +A +L M +K
Sbjct: 345 LIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKG 404
Query: 445 CLVQNLS--CEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
LS C M+ E+ E+ + LI+EMR+ + +
Sbjct: 405 HDPSQLSYLCIMMAHEKKEELEE-----------------CMELIEEMRKIGCVPDLNIY 447
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546
N+ I CK + +A++++ MQ + P ++T+ +V+G S
Sbjct: 448 NTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLS 491
>gi|410110111|gb|AFV61135.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
duartei]
Length = 381
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
G+ L S++I+ +L A I ++ G D Y +++ + K K+FREA +L
Sbjct: 2 GDLVLYSNLIELSRKLCDYSKAISIFSRLKRLGFXPDLVAYNAMINVFGKAKLFREARSL 61
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
+ +M+ + ++ N + + + E + F + A S+ EMRE L
Sbjct: 62 IGEMKTAGVMPNTTSYSTLLTMYVE----NKKFLE----------ALSVFSEMREIKCLL 107
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ N I + + M +A K++ M++M I P V ++ L+ + E++ + L+
Sbjct: 108 DLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 167
Query: 558 GDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++R NIE V+ Y ++++ + + E+ +I M+ + + + + Y +
Sbjct: 168 RLMQRKNIEQNVVT-----YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYST 219
>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 607
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 94/238 (39%), Gaps = 24/238 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
IDA + G + A D+L +M G P D +Y S++ A K ++EA +L++M
Sbjct: 284 AIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVG 343
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L N A S D + + A+ L++EM + NS+
Sbjct: 344 LSPN--------------AISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSA 389
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK---R 562
I KG+ +AL + R M PTV + V+ +SS LW K R
Sbjct: 390 IAACAKGEQWKEALALLREM------PTV-GLHTTVFSYSSAIDACGKGNLWIKAKELLR 442
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
+ + LA + Y + + +G +E ++++ M + D Y S K
Sbjct: 443 EMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAK 500
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ IDA + E A D+L +M G D +Y S + A K ++EA A+LK+M
Sbjct: 457 NSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAKGDQWKEALAVLKEMSA 516
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ L +L C S D S + +A +L+ EMR I +
Sbjct: 517 AGLAPDLICYN--------------SAIDACSKGGRWKMAVALLGEMRAAGLTPNIISYS 562
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
S+I +G + + + M+ + P V T++ L+
Sbjct: 563 SAIDACVRGGQWKEGIALLEEMRGSGVVPDVITYHALM 600
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 99/522 (18%), Positives = 193/522 (36%), Gaps = 95/522 (18%)
Query: 171 ELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDE 230
E PD ++ V+ AC + G + M G+ DA S A I+ C R
Sbjct: 62 EGAAPDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSY--GAAINA--CARG- 116
Query: 231 LKKFKCYIDQLSTPFAHHYQQ---FYESLLSLHFKFDDIDAAGELILDM----------- 276
++K +D L A Y S ++ K + A L+ +M
Sbjct: 117 -GRWKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVIS 175
Query: 277 -----------NRYREPLP-NPKLRQDAQKPYLISIGSPNLRCG---------------L 309
R+ E L +R P +I+ GS C
Sbjct: 176 YSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIP 235
Query: 310 KLQIMPELLEKDSILKM---EGKQELVLFRNGKLLHSNRAM---------AKLINGYKKH 357
+ + P ++ S++ EG+ ++ L LL +AM I+ K
Sbjct: 236 TVGLTPNVISYSSVITACAKEGQWKIAL----DLLREMKAMRLAPNIITYNAAIDACAKG 291
Query: 358 GKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMD 414
G+ E + + +E + G + S VIDA + + A DIL +M G +
Sbjct: 292 GRWKEA----IDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLSPN 347
Query: 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL--------SC--------EMVVSE 458
+ +Y S + A K ++EA+ LL++M + + Q + +C + +
Sbjct: 348 AISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAKGEQWKEALALLR 407
Query: 459 RFSEVADKSASFTDTSSL--MDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
V + F+ +S++ K +L A+ L++EM NS+I +G
Sbjct: 408 EMPTVGLHTTVFSYSSAIDACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACGRGD 467
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR 573
+A+ + R M + + P V ++ + + + +++ + + + + LA
Sbjct: 468 QWEEAVDLLREMPTVGLSPDVFSYSSAIAACAKGDQWKEALA----VLKEMSAAGLAPDL 523
Query: 574 DLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEF 615
Y + + +GG ++ + ++G M+ + + + Y S
Sbjct: 524 ICYNSAIDACSKGGRWKMAVALLGEMRAAGLTPNIISYSSAI 565
>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 662
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
S D +L D + E+R+ T+ NS I F K M+ + L ++R+M+E
Sbjct: 157 SLVDVLALAKDVDRIRFICSEIRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMKEN 216
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588
I PT+ T+ +L+ G S M+ D ++ +ESG + Y T++ + + G
Sbjct: 217 GIEPTLYTYNFLMNGLVS-AMFVDSAERVFEV---MESGRIKPDVVTYNTMIKGYCKAGQ 272
Query: 589 FERVMEVIGYMKKQNMYVDKLMY 611
++ +E + M+ + + DK+ Y
Sbjct: 273 TQKALEKLRVMETKGLEADKITY 295
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 74/180 (41%), Gaps = 22/180 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM---- 441
VI L + G L + + ++M G + Y L+ Y K +A LL +M
Sbjct: 333 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEG 392
Query: 442 ------RKSCLVQNLSCEMVVSE--------RFSEVADKS---ASFTDTSSLMDKSDLAE 484
S +V L V E RF+ +A S +S D + D AE
Sbjct: 393 FNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAE 452
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK-IRPTVETFYYLVYG 543
L +EM E+ Y N+ I F K + +AL +++RM+E + TV T+ L+ G
Sbjct: 453 RLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTILISG 512
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 77/195 (39%), Gaps = 16/195 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+GY K G + LL + E + T S V++ L + G +E A D
Sbjct: 368 LIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTY-SVVVNGLCKNGRVEEAMDYFQTCRFN 426
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G ++S Y SL+ K EAE L ++M + ++ C + + F++
Sbjct: 427 GLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHG----- 481
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
K D A +L + M EE T+Y I K +ALK++ M +
Sbjct: 482 ---------KVDEALALFKRMEEEEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDK 532
Query: 529 KIRPTVETFYYLVYG 543
I PT L G
Sbjct: 533 GITPTAACLRALSTG 547
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 104/270 (38%), Gaps = 31/270 (11%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD--VIDALIQLGFLEAAHDILDDME 407
LI + K G EL W+ +K+ E TL + +++ L+ F+++A + + ME
Sbjct: 193 LIKSFGKLGMVEELLWVWRKMKENGI---EPTLYTYNFLMNGLVSAMFVDSAERVFEVME 249
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
D TY +++ Y K ++A L+ M L ADK
Sbjct: 250 SGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLE----------------ADKI 293
Query: 468 ASFTDTSSLMDKSDLAE--SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
T + SD + +L QEM E+ + + I CK + + ++ M
Sbjct: 294 TYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENM 353
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNF 583
+P V + L+ G++ D L + R I+ G + D+ Y ++
Sbjct: 354 IRKGSKPNVAIYTVLIDGYAKTGSVEDAIRL---LHRMIDEG---FNPDVVTYSVVVNGL 407
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ G E M+ + + ++ + Y S
Sbjct: 408 CKNGRVEEAMDYFQTCRFNGLAINSMFYSS 437
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 105/263 (39%), Gaps = 24/263 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+ING+ G+ + L L + +T +ID L + ++ A D+ M
Sbjct: 199 VINGFFNEGQVDKAYSLFLEMGVSPDVVTYNT----IIDGLCKAQEVDRAEDVFQQMVEK 254
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSA 468
G ++ TY +++ K + AE + ++M K N++ ++
Sbjct: 255 GVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTII------------ 302
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
D D AE + Q+M + N+ I CK + I A ++++M +
Sbjct: 303 ---DGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDK 359
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588
++P T+ ++ G L + + G ++ I+ GV + Y L+ +L G
Sbjct: 360 GVKPDNLTYTIIIDG---LCKAQSVDRAEGVFQQMIDKGV-KPNNGTYNCLIHGYLSTGQ 415
Query: 589 FERVMEVIGYMKKQNMYVDKLMY 611
+E V++ I M ++ D Y
Sbjct: 416 WEEVVQRIKEMSAHDLEPDVFTY 438
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 91/427 (21%), Positives = 160/427 (37%), Gaps = 64/427 (14%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD--AHSIIILAQIHEMNCQRDE 230
+KPD + +N ++ + + K + + + M GV D ++III + R E
Sbjct: 326 VKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAE 385
Query: 231 LKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQ 290
F+ ID+ P Y LS G+ + R +E + L
Sbjct: 386 -GVFQQMIDKGVKPNNGTYNCLIHGYLS----------TGQWEEVVQRIKE-MSAHDLEP 433
Query: 291 DA-QKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAK 349
D L+ N +C + DS+++ K + ++ G +LH
Sbjct: 434 DVFTYGLLLDYLCKNGKCNEARSLF------DSMIRKGIKPSVTIY--GIMLH------- 478
Query: 350 LINGYKKHGKNSELSWLLL-----SIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
GY K G SE+ LL I H F + +C+ A+I E H I
Sbjct: 479 ---GYGKKGALSEMHDLLNLMVANGISPNHRIF-NTVICAYAKRAMID----EVMH-IFI 529
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
M+ G + TY +L+ A K+ +A QM + N +V +
Sbjct: 530 KMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPN---NVVFN------- 579
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
S +DK + E L EM + I N+ + CK + +A ++
Sbjct: 580 ----SLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDS 635
Query: 525 MQEMKIRPTVETFYYLVYGHS-SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNF 583
M M ++P V ++ L+ GH + M + +L G + ++ +++ Y TLL +
Sbjct: 636 MVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVS-----YNTLLHGY 690
Query: 584 LQGGYFE 590
+ G +
Sbjct: 691 CKAGRID 697
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 48/252 (19%), Positives = 106/252 (42%), Gaps = 31/252 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
+ID L + ++ A + M G D TY +++ K + +AE + +QM K
Sbjct: 301 IIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKG 360
Query: 445 CLVQNLS--------CEMVVSER----FSEVADKSASFTD-TSSLMDKSDLA----ESLI 487
NL+ C+ +R F ++ DK + T + + L+ E ++
Sbjct: 361 VKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVV 420
Query: 488 QEMREEAA---LSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
Q ++E +A ++ + + CK +A ++ M I+P+V + +++G+
Sbjct: 421 QRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGY 480
Query: 545 ---SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
+L D+ L + +G+ R ++ T++ + + + VM + MK+
Sbjct: 481 GKKGALSEMHDLLNLM------VANGISPNHR-IFNTVICAYAKRAMIDEVMHIFIKMKQ 533
Query: 602 QNMYVDKLMYKS 613
Q + + + Y +
Sbjct: 534 QGLSPNVVTYGT 545
>gi|8778411|gb|AAF79419.1|AC025808_1 F18O14.1 [Arabidopsis thaliana]
Length = 689
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 104/235 (44%), Gaps = 29/235 (12%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAE---ALLKQ 440
+ +I+ +G +E +L M G + TY SL+ Y K + EAE LLK+
Sbjct: 50 NSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKE 109
Query: 441 -------------MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD---KSDL-- 482
M C + + V + E+ ++ + T +SL++ KS
Sbjct: 110 KKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNT-TICNSLINGYCKSGQLV 168
Query: 483 -AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
AE + M + + + N+ + +C+ + +ALK+ +M + ++ PTV T+ L+
Sbjct: 169 EAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILL 228
Query: 542 YGHSSLEMYRDITILWG-DIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEV 595
G+S + + D+ LW +KR + + ++ S TLL + G F M++
Sbjct: 229 KGYSRIGAFHDVLSLWKMMLKRGVNADEISCS-----TLLEALFKLGDFNEAMKL 278
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 21/186 (11%)
Query: 380 STLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK 439
+T+C+ +I+ + G L A I M D TY +L+ Y + EA L
Sbjct: 151 TTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCD 210
Query: 440 QMRKSCLVQNLSCEMVVSERFSEV-------------------ADKSASFTDTSSLMDKS 480
QM + +V + ++ + +S + AD+ + T +L
Sbjct: 211 QMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLG 270
Query: 481 DLAES--LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFY 538
D E+ L + + L+ LN I CK + + +A +I + + +P V+T+
Sbjct: 271 DFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQ 330
Query: 539 YLVYGH 544
L +G+
Sbjct: 331 ALSHGY 336
>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63130, mitochondrial; Flags: Precursor
gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 120/286 (41%), Gaps = 30/286 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++NG K G + +L+ LL ++ + + +IDAL + A ++ +M+
Sbjct: 227 VVNGLCKRG-DIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNK 285
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM--RK--------SCLVQNLSCE--MVVS 457
G + TY SL+ + +A LL M RK S L+ E +V +
Sbjct: 286 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 345
Query: 458 ER-FSEVADKS--------ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
E+ + E+ +S +S + + D+ D A+ + + M + + N+ I
Sbjct: 346 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 405
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
FCK K + + ++++R M + + T+ L++G + I++ K+ + GV
Sbjct: 406 FCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVF---KQMVSDGV 462
Query: 569 LAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
L D+ Y LL G E + V Y+++ M D Y
Sbjct: 463 LP---DIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYN 505
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 20/205 (9%)
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G+ DS T+ +L+ ++ EA AL+ +M +L +V + D
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGD---- 236
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
DLA SL+++M + + N+ I C K + DAL ++ M
Sbjct: 237 ----------IDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKG 286
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGY 588
IRP V T+ L+ + + D + L D I+R I V+ + L+ F++ G
Sbjct: 287 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT-----FSALIDAFVKEGK 341
Query: 589 FERVMEVIGYMKKQNMYVDKLMYKS 613
++ M K+++ D Y S
Sbjct: 342 LVEAEKLYDEMIKRSIDPDIFTYSS 366
>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 942
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 32/232 (13%)
Query: 339 KLLH--SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL 396
KL H + R +ING+ K G + S + + + + +I+ L++ +
Sbjct: 583 KLRHRPTTRTFMPIINGFAKSG-DMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQM 641
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREA-------------------EAL 437
E A +ILD+M LAG + TY ++ Y V +A EAL
Sbjct: 642 EKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEAL 701
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD----KSDLAES--LIQEMR 491
LK KS +Q+ + V++ S SF + L+D + D+ E+ LIQ+M+
Sbjct: 702 LKACCKSGRMQSA---LAVTKEMSARNIPRNSFV-YNILIDGWARRGDVWEAADLIQQMK 757
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+E I+ S I K + A + M+ + ++P ++T+ L+ G
Sbjct: 758 KEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKG 809
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 39/219 (17%), Positives = 96/219 (43%), Gaps = 20/219 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S ++ + G EAA D+ + ++++ Y ++ A+ + AEAL+++M +
Sbjct: 384 SVIVGGFSKAGNAEAADHWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEE 443
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ ++ + + ++ VAD+ + + ++E T+
Sbjct: 444 EGIDAPIAIYHTMMDGYTMVADEKKGLI--------------VFKRLKECGFTPTVVTYG 489
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKR 562
I + K I AL++ R M+E ++ ++T+ ++ G L+ + + ++ D +K
Sbjct: 490 CLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKE 549
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
++ V+ LY ++ F G +R ++ + M+K
Sbjct: 550 GMKPDVI-----LYNNIIAAFCGMGNMDRAIQTVKEMQK 583
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 66/149 (44%), Gaps = 24/149 (16%)
Query: 417 TYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSL 476
TY L+ Y KV +A + + M++ + NL ++ F ++ D + +F
Sbjct: 487 TYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAF------ 540
Query: 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
++ ++M +E + N+ I FC + A++ + MQ+++ RPT T
Sbjct: 541 --------AVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRT 592
Query: 537 FYYLVYGHSSLEMYRDITILWGDIKRNIE 565
F ++ G + GD++R++E
Sbjct: 593 FMPIINGFAKS----------GDMRRSLE 611
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 76/370 (20%), Positives = 143/370 (38%), Gaps = 48/370 (12%)
Query: 180 FNLVLHACVRFGSSLKGQHIMEL-MSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYI 238
+N+VL + R G + + I M++ GV A +I+ I C+ +EL
Sbjct: 183 YNIVLQSLCRAGETARALEIFRGEMARDGV---APTIVTYNTIINGLCKSNELGAGMELF 239
Query: 239 DQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLI 298
++L H Y +L+ K D++ A L DM+ R +PN Y +
Sbjct: 240 EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSS-RSCVPN-------VVTYSV 291
Query: 299 SIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELV---LFRNGKLLHSNRAMAKLINGYK 355
I N C + +++ +EL+ ++ +L + ++G
Sbjct: 292 LI---NGLC--------------KVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLC 334
Query: 356 KHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMELAGHPMD 414
K +E L+ S++ T+ S +ID L + G ++ A + DDM G+ +
Sbjct: 335 KQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPN 394
Query: 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTS 474
TY +L+ K A A+++ M + ++ V+ + F + +
Sbjct: 395 VITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKAS---------- 444
Query: 475 SLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ-EMKIRPT 533
+ D A L+ M + NS I CK G+A +++ M + + P
Sbjct: 445 ----RVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPD 500
Query: 534 VETFYYLVYG 543
T+ L+ G
Sbjct: 501 KITYCTLIDG 510
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 22/230 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+ L + L A ++ +++ GH D TY +L+ + K EA L M
Sbjct: 222 IINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRS 281
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAA--LSTIYKLN 503
V N+ V+ +V + D A LIQEM ++ L I N
Sbjct: 282 CVPNVVTYSVLINGLCKVG--------------RIDEARELIQEMTRKSCDVLPNIITYN 327
Query: 504 SSIYFFCKGKMIGDALKIYRRMQE--MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
S + CK M +A ++ R +++ +++ P TF L+ G + ++ D+
Sbjct: 328 SFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMI 387
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+G + Y L+ + ER +I M + + D + Y
Sbjct: 388 ----AGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITY 433
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 16/196 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMEL 408
++G K +E L+ S++ T+ S +ID L + G + A ++ DDM
Sbjct: 823 FLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIA 882
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G+ + TY L+ K A A+++ M + ++ V+ + F + +
Sbjct: 883 GGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKAS---- 938
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ-E 527
D A L+ M + NS I CK G+A +++ M +
Sbjct: 939 ----------HVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLK 988
Query: 528 MKIRPTVETFYYLVYG 543
+ P T+ L+ G
Sbjct: 989 HGLAPDKITYCTLIDG 1004
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 97/223 (43%), Gaps = 35/223 (15%)
Query: 350 LINGYKKHGKNSELSWLL-----LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
LI G K G + S L +++ + +FG +ID L + G +EAA DILD
Sbjct: 573 LIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGA------LIDGLCKAGQVEAARDILD 626
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLS--------CEMV 455
M G P + TY +L+ K EA L++M S C+ +++ C
Sbjct: 627 LMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRAS 686
Query: 456 VSERFSEVADKSASF---TDTSS---LMD------KSDLAESLIQEMREEAALSTIYKLN 503
++ ++ + SF DT + L+D +++ A ++++EM + + N
Sbjct: 687 RTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYN 746
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIR---PTVETFYYLVYG 543
+ I CK + +A +++ M R P V T+ L+ G
Sbjct: 747 TLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLING 789
>gi|356510096|ref|XP_003523776.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g18475-like [Glycine max]
Length = 640
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 22/213 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LIN + + GK + + ++ K + + S ++D L ++G LE A +L +M+ +
Sbjct: 405 LINEFCRRGK-PDRARNVIEFMKSNRCYPNVYNYSALVDGLCKVGKLEDAKGVLAEMKGS 463
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK-SCLVQNLSCEMVVS-----ERFSEV 463
G D+ TY SL+ + EA LLK++++ +C ++ +++ +RF E
Sbjct: 464 GLKPDTVTYTSLINFLCRNGQIGEAMGLLKEIKENTCQADTVTFNVILGGLCREDRFEEA 523
Query: 464 AD-------------KSASFTDTSSLMDKSDL--AESLIQEMREEAALSTIYKLNSSIYF 508
D K + +SL K +L A+ L+ M N +
Sbjct: 524 LDMLEKLPQQGVYLNKGSYRIVLNSLTQKCELKKAKELLGLMLSRGFRPHYATSNELLVC 583
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
CK M+ DA + EM +P +E++ L+
Sbjct: 584 LCKAGMVDDAAVALFYLVEMGFQPGLESWEVLI 616
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I+ L + G A ++ DDM G D TY +++ K+ A L+K+M +
Sbjct: 165 TTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGE 224
Query: 444 ----------SCLVQNLSCEMVVSER---FSEVADKSASFTDTS--SLM------DKSDL 482
S L+ +L + +V+E FS + K S T S SL+ +
Sbjct: 225 VGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKE 284
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A +++ EM + I + I FCK + +A + + M EM + P V T+ L++
Sbjct: 285 ASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMH 344
Query: 543 GHS 545
G+S
Sbjct: 345 GYS 347
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 17/195 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMEL 408
LINGY + E L + H +T+ + +I A QLG L A ++ DM
Sbjct: 377 LINGYCMVKRIDEAKQLFNEMI--HQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHT 434
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G+ D TY LL + K +A L + M+ + L NL ++ + KS
Sbjct: 435 NGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMC----KSG 490
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ L +E + ++ + + T + I CK ++ +AL+ +R+M+E
Sbjct: 491 NLNHARKL-----FSELFVHGLQPDVQIYT-----TIINGLCKEGLLDEALEAFRKMEED 540
Query: 529 KIRPTVETFYYLVYG 543
P ++ ++ G
Sbjct: 541 GCPPNEFSYNVIIRG 555
>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 108/278 (38%), Gaps = 29/278 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L++G GK E L KK + +F ++ +ID + +E + +M
Sbjct: 518 LLHGLCNMGKIEEAGGLWHECKK-NGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTM 576
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
++ Y +L+ AY + REA L MR S + + +S
Sbjct: 577 KIEQNAVVYGTLIRAYCENGNMREAFRLRDDMR--------------SRGIPQTSATYSS 622
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
S + D A L+ EMR+E + + I +CK +G K+ +QEM
Sbjct: 623 LIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCK---LGQMHKVDSILQEMS 679
Query: 530 IR---PTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVL--AVSRDLYETLLLNFL 584
I P T+ ++ GH L + L ++ + G++ AV+ Y L F
Sbjct: 680 INNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMA---QKGIVPDAVT---YNALTNGFC 733
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHL 622
+ G E ++V M + +D + Y + HK L
Sbjct: 734 KEGKMEEALKVCDLMSTGGISLDDITYTTLIDGWHKPL 771
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 97/245 (39%), Gaps = 28/245 (11%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAA 399
+N LI+GY + G S L I+ + S G S C+ +I + +E A
Sbjct: 301 NNVVYNTLIDGYCRIGNISTA----LQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHA 356
Query: 400 HDILDDMELAGHPMDSTTYKSL-----LTAYYKVKMFREAEALLKQMRK---------SC 445
+L++M G ++ T+ S+ L + + E LL+ + S
Sbjct: 357 EHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSG 416
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLM-------DKSDLAESLIQEMREEAALST 498
L QN + + + A+ T TS+ + + A L++EM E +
Sbjct: 417 LCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLD 476
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG 558
N+ I CK + + K+ M I+P + T+ L++G ++ + LW
Sbjct: 477 SISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWH 536
Query: 559 DIKRN 563
+ K+N
Sbjct: 537 ECKKN 541
>gi|255661040|gb|ACU25689.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 429
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + +NS W S+ + + GE + D+++ + + G L
Sbjct: 224 SSPYMDMLANKFTSYSQNS---WKPFSLARGVRVTAKGEGSFDLDMVNTYLSIFLAKGKL 280
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F+EA ++L ++ +++ V+
Sbjct: 281 SVACKLFEIFTNMGVDPASYTYNSIMSSFVKRGYFKEAWSVLHAFGETVYPADIATYNVI 340
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 341 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 386
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS +D
Sbjct: 387 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLKD 422
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREEAAYTMFLDLKRKGNNFVDGISYSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + A L+K +R LV +L
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWAGKLMKHIRDGNLVPDL 165
>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
Length = 428
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 92/231 (39%), Gaps = 23/231 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID L + G L+AA +L M AG + TY +L+ K + +A +K+M +
Sbjct: 49 TTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLR 108
Query: 444 SCLVQNLSCE--MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQE-MREEAALSTIY 500
S CE +V S + ++ D A ++QE M E + +
Sbjct: 109 S------GCEPDLVTYN----------SLIHGLCMANRMDDAGLVLQELMIESGRIPDVV 152
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
N+ I CK + L++ M I P V TF ++ G D ++
Sbjct: 153 TYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVF--- 209
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
K +E G + S Y +L N + + V EV+ +M K Y Y
Sbjct: 210 KGMLERGCVPDSLT-YSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATY 259
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 48/249 (19%), Positives = 105/249 (42%), Gaps = 25/249 (10%)
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSC 445
I L + G L+ ++L++M+ G D T+ S+++ K +A + K M + C
Sbjct: 158 ISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGC 217
Query: 446 LVQNLSCEMVV-----SERFSEVAD------KSASFTDTSS-------LMDKSDL--AES 485
+ +L+ +++ + R V + KS + +++ L+ D+ A
Sbjct: 218 VPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASW 277
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
++ E + +Y N+ I C+ A I M E P + ++ +++ G
Sbjct: 278 AYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDG-- 335
Query: 546 SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMY 605
L ++ W ++ ++SG + TL+ F + G + +++ MK +N+
Sbjct: 336 -LCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNIC 394
Query: 606 V-DKLMYKS 613
V D + Y +
Sbjct: 395 VPDVVTYNT 403
Score = 38.9 bits (89), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 17/173 (9%)
Query: 373 EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFR 432
E +S S ++D L + L+ ++L+ M +GH S TY L+ A +
Sbjct: 214 ERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIE 273
Query: 433 EAEALLKQ-MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491
A +Q M C++ E+ F +S F LA++++ M
Sbjct: 274 SASWAYEQAMEAGCVM-----EVYTHNAFIGALCRSGKFP----------LAKNILLGMI 318
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK-IRPTVETFYYLVYG 543
E +L + N I CK + DA K+ R+M + +P V F L+ G
Sbjct: 319 ESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISG 371
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 23/265 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMEL 408
++G K +E L+ S++ T+ S +ID L + G + A + DDM
Sbjct: 194 FLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIA 251
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G+ + TY +L+ K A A+++ M + ++ V+ + F + +
Sbjct: 252 GGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKAS---- 307
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ D A L+ M + NS I CK G+A +I ++
Sbjct: 308 ----------RVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNR 357
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGG 587
+ P TF L+ G + + L+ + + +N++ V+ + L+ + G
Sbjct: 358 MLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMT-----FGALIDGLCKAG 412
Query: 588 YFERVMEVIGYMKKQNMYVDKLMYK 612
E +++ M + + + Y
Sbjct: 413 QVEAARDILDLMGNLGVPPNVVTYN 437
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 89/234 (38%), Gaps = 32/234 (13%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+ L + L A ++ +++ GH D TY +L+ + K EA L M
Sbjct: 87 IINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRG 146
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAA--LSTIYKLN 503
V N+ V+ +V + D A LIQEM ++ L I N
Sbjct: 147 CVPNVVTYSVLINGLCKVG--------------RIDEARELIQEMTRKSCDVLPNIITYN 192
Query: 504 SSIYFFCKGKMIGDALKIYRRMQE--MKIRPTVETFYYLVYG----HSSLEMYRDITILW 557
S + CK M +A ++ R +++ +++ P TF L+ G + E D I
Sbjct: 193 SFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNDDMIAG 252
Query: 558 GDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
G + + Y L+ + ER +I M + + D + Y
Sbjct: 253 GYVPNVVT----------YNALVNGLCKADKMERAHAMIESMVDKGVTPDVITY 296
>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 504
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L++ Y G+ E+ LL S+ STL + +I+A Q G++E A ++ + +E
Sbjct: 378 LLSAYGNSGRIDEMESLLESMVSSVAKPDISTL-NTLINAYAQGGYIEKAEEVFNSLESK 436
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLSCEMVVS-----ERFSEV 463
G D ++ SL+ AY + K+FR+ ++ ++M K+ C+ + ++ +S E+ EV
Sbjct: 437 GLTPDVMSWTSLMGAYAQRKLFRKCVSIFQKMVKAGCIPDRATAKVFLSSCRSPEQVKEV 496
Query: 464 AD 465
D
Sbjct: 497 TD 498
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+IDA + G A + D M+ AG ++ LL++Y K EAE L++++ S
Sbjct: 308 LIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSG 367
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ + + + S + + D ESL++ M A I LN+
Sbjct: 368 VKPDT---FMFNSLLSAYGNSG-----------RIDEMESLLESMVSSVAKPDISTLNTL 413
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYR 551
I + +G I A +++ ++ + P V ++ L+ ++ +++R
Sbjct: 414 INAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQRKLFR 459
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 60/303 (19%), Positives = 112/303 (36%), Gaps = 61/303 (20%)
Query: 363 LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422
+ W++ S ++++ ++ L + G L A D DM+ G T+ ++
Sbjct: 154 VEWMIFSGIATYNTY---------LEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMI 204
Query: 423 TAYYKVKMFREAEALLKQMRKSCLVQNL---SCEMVVSERFSEVADKSASFTDTSSLMDK 479
Y K +A+ L + MRK+ NL + M R F + S+
Sbjct: 205 NIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFI 264
Query: 480 SDL------------------AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
D+ A+ + Q M E N I F + + DA +
Sbjct: 265 PDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAV 324
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLE----------------------MYRDITILWGD 559
Y M+E +PT+++ L+ ++ M+ + +G+
Sbjct: 325 YDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGN 384
Query: 560 IKRN------IESGVLAVSRDLYETL--LLN-FLQGGYFERVMEVIGYMKKQNMYVDKLM 610
R +ES V +V++ TL L+N + QGGY E+ EV ++ + + D +
Sbjct: 385 SGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMS 444
Query: 611 YKS 613
+ S
Sbjct: 445 WTS 447
>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
Length = 724
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 18/228 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++ ++ G L+ A I+ +ME +G D TY L+ AY + A +LK+M S
Sbjct: 403 LLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASG 462
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ N S FS + AS+ D K + +++EMR + N
Sbjct: 463 VRPN-------SYVFSRIL---ASYRDRG----KWQKSFQVLREMRNSGVSPDRHFYNVM 508
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I F K + AL + RM+ ++P T+ L+ H + L+ ++ E
Sbjct: 509 IDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQ---E 565
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
SG + Y ++ +F + +E V ++G M+ Q + + + Y +
Sbjct: 566 SGCSPCT-TTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTT 612
>gi|242039913|ref|XP_002467351.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
gi|241921205|gb|EER94349.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
Length = 846
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 34/197 (17%)
Query: 374 HHSFGESTLCS--DVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMF 431
H S E T+ + ++D L G + A + D+M G ++ T+ L+ Y K
Sbjct: 281 HRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQANTITFNVLIDGYAKTGRM 340
Query: 432 REAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL--------- 482
+A A ++M+ LV + SC F+ +A + F + L+ D+
Sbjct: 341 DQACAAYREMKARGLVPD-SCT------FNIIAAGAYKFGHAAQLVHDHDMFGSHMLADG 393
Query: 483 ----------------AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
A L++ E+ A ++ N+ I + K + +A ++YR M
Sbjct: 394 MDMLVCRLCWDCRLDDAWELLRGAIEQGAPLSVTGFNALIAAYSKEGLHEEAFELYRIMN 453
Query: 527 EMKIRPTVETFYYLVYG 543
++ + P+ TF YL+ G
Sbjct: 454 KLGLAPSSSTFNYLIMG 470
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/162 (19%), Positives = 67/162 (41%), Gaps = 16/162 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S I+ L +L ++ A+ +M G ++ TY S+++A + EA L + MR+
Sbjct: 534 SAYINGLCRLDYVNEAYQAFAEMTARGIVPNNFTYNSIISALCRAGNMTEALKLQQNMRQ 593
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ LV ++ ++ + K ++ ++L+ +M N
Sbjct: 594 NGLVPDIYTSNILIDGLCREG--------------KLEMVDNLLLDMCSNGLTPDTVTYN 639
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
+ I +C+ K + A+ +M P + F Y ++ HS
Sbjct: 640 TIINAYCRAKDMNSAMNFMNKMLAAGCEPDI--FTYNIWMHS 679
>gi|255661122|gb|ACU25730.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 431
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 85/195 (43%), Gaps = 20/195 (10%)
Query: 364 SWLLLSIKKEHH--SFGESTLCSDVIDALIQL----GFLEAAHDILDDMELAGHPMDSTT 417
SW S+ K + G+ T D+++ + + G L A + + G S T
Sbjct: 244 SWKSFSLTKGVRVMANGDDTFDIDMVNTYLSIFLAKGKLSVACKLFEIFTTMGVDPVSYT 303
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477
Y S+++++ K F+EA +L M ++ +++ V+ + + M
Sbjct: 304 YNSIMSSFVKKGYFKEAWGVLHAMGETIYPADIATYNVIIQGLGK--------------M 349
Query: 478 DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
++DLA +++ ++ +E I N+ I K I +A K++ +M+ I P V T+
Sbjct: 350 GRADLANAVLDKLMKEGGYLDIVMYNTLINALGKAGRIDEANKLFHQMKASGISPDVVTY 409
Query: 538 YYLVYGHSSLEMYRD 552
L+ HS +D
Sbjct: 410 NTLIEVHSKAGRLKD 424
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + LE A ++++ME
Sbjct: 65 LIDGLYKNGREDAAYTMFLDLKRKGNNFVDGITYSIVILHLCREDQLEEALKLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + E L+K +R LV +L
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDSTERLMKHIRDGNLVPSL 165
>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
sativus]
Length = 686
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 112/281 (39%), Gaps = 25/281 (8%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+++G K G LL +++ H + + +ID L + G AH++ +M+
Sbjct: 221 GTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQ 280
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM--RK--------SCLVQNLSCE---M 454
D TY ++ + + +AE LL++M RK S L+ E
Sbjct: 281 EKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFF 340
Query: 455 VVSERFSEVADKS--ASFTDTSSLMD------KSDLAESLIQEMREEAALSTIYKLNSSI 506
E + E+ +S S SS++D + D AE + + I N+ I
Sbjct: 341 EAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLI 400
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566
+C+ K + D +K+ M E + T+ L++G + D+ ++ I S
Sbjct: 401 AGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQV---GDLNAAQDLLQEMISS 457
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
GV + TLL G + +E+ M+K M +D
Sbjct: 458 GVCP-NVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDID 497
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 98/234 (41%), Gaps = 15/234 (6%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I Q+G L AA D+L +M +G + T +LL ++A + K M+K
Sbjct: 432 TTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQK 491
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTD-TSSLMDKSDL--AESLIQEMREEAALSTIY 500
S + ++ S F+ V ++ L+++ AE L +EM +
Sbjct: 492 SKM------DIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTI 545
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
+S I CK + +A +++ M P V TF L+ G+ M D L+ ++
Sbjct: 546 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEM 605
Query: 561 -KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+R I + + Y TL+ F + + +++ M +Y D + ++
Sbjct: 606 GQRGIVADAIT-----YITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRN 654
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 113/267 (42%), Gaps = 34/267 (12%)
Query: 309 LKLQIMPELLEKDSIL----KMEGKQELVLF----RNGKLLHSNRAMAKLINGYKKHGKN 360
+K +MP + +SIL E +E + F R+ + L++ K+G++
Sbjct: 258 VKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRS 317
Query: 361 SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG-HPMDSTTYK 419
+E + S+ K +T C+ ++ G L H +LD M G HP D +
Sbjct: 318 TEARKIFDSMTKRGLEPDIATYCT-LLQGYATKGALVEMHALLDLMVRNGIHP-DHHVFN 375
Query: 420 SLLTAYYKVKMFREAEALLKQMRKSCLVQN---------------------LSCEMVVSE 458
L+ AY K + EA + +MR+ L N L E ++ E
Sbjct: 376 ILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDE 435
Query: 459 RFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEA-ALSTIYKLNSSIYFFCKGKMIGD 517
+ S + + DK D AE LI EM + L+TI+ NS I+ CK + +
Sbjct: 436 GLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIF-FNSIIHSHCKEGRVIE 494
Query: 518 ALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ K++ M + ++P V T+ L+ G+
Sbjct: 495 SEKLFDLMVRIGVKPNVITYSTLIDGY 521
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 127/303 (41%), Gaps = 32/303 (10%)
Query: 166 KSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMN 225
+S+G E PD + +N ++ + G S + + I + M++ G+ D + L Q +
Sbjct: 293 RSDGVE---PDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYA-- 347
Query: 226 CQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPN 285
+ L + +D + H + L+ + K + +D E +L ++ R+ N
Sbjct: 348 -TKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVD---EAMLVFSKMRQHGLN 403
Query: 286 PKL-RQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSIL------------KMEGKQEL 332
P + A L GS + Q++ E L + I+ K + +EL
Sbjct: 404 PNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEEL 463
Query: 333 VL--FRNGKLLHSNRAMAKLINGYKKHGK---NSELSWLLLSIKKEHHSFGESTLCSDVI 387
+L G L++ +I+ + K G+ + +L L++ I + + STL I
Sbjct: 464 ILEMLDRGICLNT-IFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTL----I 518
Query: 388 DALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLV 447
D G ++ A +L M G D TY +L+ Y +V +A AL K+M S +
Sbjct: 519 DGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVS 578
Query: 448 QNL 450
N+
Sbjct: 579 PNI 581
>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 529
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 15/194 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LIN K G E LL + KE G T S ++D +G ++ A I M
Sbjct: 226 LINALCKEGNVKEAKNLLAVMTKEGIKPGVVTY-STLMDGYCLVGEVQNAKQIFHAMVQM 284
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + +Y ++ K K EA LL++M L +N+ + V + KS
Sbjct: 285 GVNPNVYSYNIMINGLCKCKRVDEAMNLLREM----LHKNMVPDTVTYNSLIDGLCKSGR 340
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
T +LM+ EM + + S + CK + + A ++ +M+E
Sbjct: 341 ITSALNLMN----------EMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERG 390
Query: 530 IRPTVETFYYLVYG 543
I+PT+ T+ L+ G
Sbjct: 391 IQPTMYTYTALIDG 404
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 14/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID L + G + +A +++++M G P D TY SLL A K + +A AL +M++
Sbjct: 329 NSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKE 388
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ + M + K + A+ L Q + + ++
Sbjct: 389 ----RGIQPTMYTYTALIDGLCKGGRLKN----------AQELFQHLLVKGCCIDVWTYT 434
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
I CK M +AL I +M++ P TF ++
Sbjct: 435 VMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIII 472
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 109/264 (41%), Gaps = 30/264 (11%)
Query: 309 LKLQIMPELLEKDSILK---MEGKQELVLFRNGKLLHSNRAM-----AKLINGYKKHGKN 360
LKL P+ + ++++K ++G+ + L + K++ M L+NG K G+
Sbjct: 72 LKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGE- 130
Query: 361 SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS 420
+ + LL + ++ + + + +ID L + + A+D+ +M+ G D+ TY +
Sbjct: 131 TRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTT 190
Query: 421 LLTAYYKVKMFREA-----EALLKQMRKSCLVQNLSCEMVVSE-RFSEVADKSASFTDT- 473
L+ + + A E +LK + + N+ + E E + A T
Sbjct: 191 LIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEG 250
Query: 474 --------SSLMDKSDL------AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
S+LMD L A+ + M + +Y N I CK K + +A+
Sbjct: 251 IKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAM 310
Query: 520 KIYRRMQEMKIRPTVETFYYLVYG 543
+ R M + P T+ L+ G
Sbjct: 311 NLLREMLHKNMVPDTVTYNSLIDG 334
>gi|255661126|gb|ACU25732.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 431
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLYKNGRAEAAYTMFLDLKRKGNNFVDGITYSIVILHLCREGQLEEALQLVEEMEAR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G D T SLL A Y+ + E L+K +R LV +L
Sbjct: 125 GFVXDLVTVTSLLIALYRRGQWDWTERLMKHIRDGNLVPSL 165
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 81/179 (45%), Gaps = 18/179 (10%)
Query: 378 GESTLCSDVIDALIQL----GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE 433
GE + D+++ + + G L A + + G + +Y S+++++ K F+E
Sbjct: 260 GEDSFDIDMVNTYLSIFLAKGKLSVACKLFEIFTNMGVDPVTYSYNSIMSSFVKKGYFKE 319
Query: 434 AEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE 493
A +L+ M ++ +++ V+ + + M ++DLA +++++ +E
Sbjct: 320 AWGVLQAMGETVNPADIATYNVIIQGLGK--------------MGRADLANVVLEKLIKE 365
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
I N+ I K I +A K++++M+ I P V T+ L+ HS +D
Sbjct: 366 GGYLDIVMYNTLINALGKAGRIDEANKLFQQMKSSGINPDVVTYNTLIGVHSKAGRLKD 424
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 64/313 (20%), Positives = 117/313 (37%), Gaps = 29/313 (9%)
Query: 307 CGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLH-----SNRAMAKLINGYKKHGKNS 361
CG +Q L+ S L +GK E+ + K+L + + LIN G+
Sbjct: 338 CGPNVQTYTALI---SGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGR-F 393
Query: 362 ELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSL 421
E + + H S + + +I +G+++ A I D M AG + TY +
Sbjct: 394 ETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNII 453
Query: 422 LTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSD 481
+ Y+K A LL+ M+ + L + + FS +F
Sbjct: 454 IHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAF----------- 502
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
SL EM E + N+ I + + DAL ++ +M E P+ T+ ++
Sbjct: 503 ---SLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMI 559
Query: 542 YGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
G S + G +K+ + V+ Y + + + G ++ MK
Sbjct: 560 SGFSKTNRISEAENFCGKMVKQGLLPNVIT-----YTSFIDGLCKNGRTSLAFKIFHEMK 614
Query: 601 KQNMYVDKLMYKS 613
K++ + + Y S
Sbjct: 615 KRDYFPNLCTYSS 627
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 24/240 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+++I + G LE A + ++M G + TY +++ Y V +A AL +M +
Sbjct: 486 ANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVE 545
Query: 444 SCLVQNLSC-EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
S V + M++S F+ T+ + + AE+ +M ++ L +
Sbjct: 546 SGNVPSSGTYNMMIS-----------GFSKTNRISE----AENFCGKMVKQGLLPNVITY 590
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
S I CK A KI+ M++ P + T+ L+ G D L D
Sbjct: 591 TSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDD--- 647
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHL 622
E V D Y TL+ G +++ MKK+ + + +Y++ + K+L
Sbjct: 648 GCEPNV-----DTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNL 702
>gi|115453133|ref|NP_001050167.1| Os03g0363700 [Oryza sativa Japonica Group]
gi|108708311|gb|ABF96106.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113548638|dbj|BAF12081.1| Os03g0363700 [Oryza sativa Japonica Group]
Length = 564
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
++I+G H SE + IK ++ T + ID L ++G ++ A I ++M
Sbjct: 260 RIIHGLFAHKMGSEALRVFNEIKLRGYNVDAVTY-TTAIDGLCKMGCIDEARQIWNEMVD 318
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVSERFSEVADKS 467
G + Y SL+ Y K F A + +M L ++ +SC ++V+ +
Sbjct: 319 KGMEPNEYAYCSLVAYYCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCTH----- 373
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ D A + +EM ++ + N I CK + +A+++Y ++
Sbjct: 374 ----------GRVDEALGMFEEMVKKGIEHDVITYNILIQGLCKAGRLSEAIQVYEQLLS 423
Query: 528 MKIRPTVETFYYLV 541
+ P+V TF L+
Sbjct: 424 SGLEPSVSTFTPLI 437
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 25/255 (9%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
++ + + +ID + G L A + D+M G MD TY + L K KMF +A+ L
Sbjct: 431 DNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLF 490
Query: 439 KQM----------------RKSCLVQNLSCEMVVSE---RFSEVADKSASFTDTSSLMDK 479
+M R C N+ + + E R + DK T
Sbjct: 491 NEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKA 550
Query: 480 SDL--AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
++ A+ L +M + + + + FC ++ +AL + +M E IRP + T
Sbjct: 551 GEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTC 610
Query: 538 YYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIG 597
L+ G+ D+ + + + I +G++ S Y TL+ +L+ E+ +I
Sbjct: 611 NTLIKGYCR---SGDMPKAYEYLSKMISNGIIPDSFS-YNTLIDGYLKEANLEKAFILIN 666
Query: 598 YMKKQNMYVDKLMYK 612
M+K+ + + + Y
Sbjct: 667 EMEKRGLQFNIITYN 681
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 110/286 (38%), Gaps = 28/286 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LIN Y + G E LL S G T + ++ L ++G + A D+L +M
Sbjct: 298 LINAYCREGLVEEAFQLLNSFSSRGMEPGLLTY-NAILYGLCKIGKYDRAKDVLIEMLQL 356
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVS----------- 457
G ++ TY +LL + EA+ + +M R+ L +S ++
Sbjct: 357 GLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQA 416
Query: 458 -------ERFSEVADKSASFTDTSSLMDKSDLAESLI--QEMREEAALSTIYKLNSSIYF 508
ER V D L+++L EM + N+ +
Sbjct: 417 LMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNG 476
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH-SSLEMYRDITILWGDIKRNIESG 567
CK KM DA ++ M E + P TF L+ G+ M + + + ++ N++
Sbjct: 477 LCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKP- 535
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ Y TL+ F + G R E+ M ++++ D + Y +
Sbjct: 536 ----DKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGT 577
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 84/429 (19%), Positives = 164/429 (38%), Gaps = 53/429 (12%)
Query: 157 DVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSI- 215
+ F L++ S G E P + +N +L+ + G + + ++ M Q G+ +A +
Sbjct: 310 EAFQLLNSFSSRGME---PGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYN 366
Query: 216 IILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILD 275
+L +I C+RD + + + D++S + L+S + G L
Sbjct: 367 TLLVEI----CRRDNILEAQEIFDEMSR------RGVLPDLVSFSSLIGVLARNGHLYQA 416
Query: 276 MNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILK-------MEG 328
+ +RE + + + LI N L++ E+L + + + G
Sbjct: 417 LMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNG 476
Query: 329 KQELVLFRNGKLLHSN---RAM-------AKLINGYKKHGKNSELSWLLLSIKKEHHSFG 378
+ +F + +L + R M LI GY K G + L ++ + +
Sbjct: 477 LCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPD 536
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
+ T + +ID + G + A ++ DDM D +Y ++L + + EA L
Sbjct: 537 KVTY-NTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLC 595
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES------------- 485
QM + + NL + + + D ++ S ++ + +S
Sbjct: 596 DQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKE 655
Query: 486 --------LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
LI EM + I N + FC + +A ++ R+M E+ I P T+
Sbjct: 656 ANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATY 715
Query: 538 YYLVYGHSS 546
L+ GH S
Sbjct: 716 SSLINGHVS 724
>gi|356495758|ref|XP_003516740.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 554
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 62/300 (20%), Positives = 121/300 (40%), Gaps = 46/300 (15%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
S+ A A LI G+ SE L + + + + + ++ ++ G L A+ +
Sbjct: 115 SSTAYACLIEALGNVGRTSEADMLFKEMICDGYK-PKLNFYTSLLRGFLKKGLLGLANGV 173
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462
L +M+ +G TY+ L Y + + + M++ N S
Sbjct: 174 LKEMDYSGIWRSKETYQIFLDYYVGAGRLEDTWSTINVMKQKGFPLN-----------SF 222
Query: 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
V K + + K A +++E+RE + NS I F K + +ALK++
Sbjct: 223 VYSKVVGIYRDNGMWKK---AIEVLEEIRERGISLDTHICNSIIDTFGKYGELDEALKLF 279
Query: 523 RRMQEMKIRPTVETFYYLVYGH-------SSLEMYRD-------------ITIL------ 556
++MQ+ +RP + T+ L+ H S ++ D +TI+
Sbjct: 280 KKMQKEGVRPNIVTWNSLIKWHCKEGDFMKSFHLFTDMQEQGLYPDPKIFVTIISCMGEQ 339
Query: 557 --WGDIKRNIESGVLAVSRD---LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
WG IK+ ES + +++ +Y L+ + Q G F+ E + +K + + V ++
Sbjct: 340 GKWGIIKKYFESMKIRGNKEYGAVYAVLVDIYGQYGKFQNARECVQALKSEGVLVSPSIF 399
>gi|302817567|ref|XP_002990459.1| hypothetical protein SELMODRAFT_131642 [Selaginella moellendorffii]
gi|300141844|gb|EFJ08552.1| hypothetical protein SELMODRAFT_131642 [Selaginella moellendorffii]
Length = 830
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 19/164 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I A +LG + A D+L MEL GH DS T +++ + +++FR+ K + S
Sbjct: 584 LIAAHTRLGHPDRAFDLLRAMELQGHNPDSVTLATVINSRASLQLFRKG----KIIHDSI 639
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L + + VV+ K F S+ A++++ NS+
Sbjct: 640 LEAGMEIDSVVATALVNFYGKCGDFATARSIFQGVGAADNVV-------------TWNST 686
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VYGHSSL 547
+ + + +AL + M + + PT TF + V GH+ +
Sbjct: 687 LAAYAQSGHASEALHVLAEMVQQGVAPTAVTFVSVLSVCGHAGV 730
>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
Length = 892
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 20/169 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I +L + G ++ A + D M G + Y SL+ Y + F +A LL +M +
Sbjct: 376 LIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKG 435
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTD-TSSLMDKSDLAES--LIQEMREEAALSTIYKL 502
L A +AS++ + L K DLA + L +EM +Y
Sbjct: 436 L-----------------APSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTF 478
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYR 551
+ I FCK + +A +++ +M + + P TF ++ G+ + R
Sbjct: 479 TTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVR 527
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 100/240 (41%), Gaps = 25/240 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LINGY +H + LL + ++ + ++ S +I L + G L +A ++ +M
Sbjct: 411 LINGYCQHDNFHQARGLLNEMVEKGLAPSAASY-SPLIAGLCRKGDLASAMELHREMARN 469
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + T+ +L++ + K EA L +M S +V N V+ E + V + +
Sbjct: 470 GVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKA 529
Query: 470 FTDTSSLMDKSDL---------------------AESLIQEMREEAALSTIYKLNSSIYF 508
F ++D+ A+ + ++ + + L + +Y
Sbjct: 530 FQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYG 589
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
FCK + + I+ M+ ++ + +F +VY L I++L+ ++K E GV
Sbjct: 590 FCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMK---EKGV 646
>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
Length = 913
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 93/463 (20%), Positives = 181/463 (39%), Gaps = 77/463 (16%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
+ P T F + A R G + + ++ M++ G V DA ++ IH + C + +
Sbjct: 171 VPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDA--VLYQTVIHAL-CDQGGVT 227
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLP-NPKLRQD 291
+ ++++ L+ + D + + R RE ++
Sbjct: 228 EAATLLNEML-------------LMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTK 274
Query: 292 AQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQ---ELVLFRNGKLLHSNRAMA 348
P +++ G LQ + + + D M G+ +VLF
Sbjct: 275 GCMPGVMTYG-------FLLQGLCRVRQADEARAMLGRVPELNVVLFNT----------- 316
Query: 349 KLINGYKKHGKNSELSWL-----LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
+I G GK +E + L L + + H++ S ++ L +LG + +A +L
Sbjct: 317 -VIGGCLAEGKLAEATELYETMGLKGCQPDAHTY------SILMHGLCKLGRIGSAVRLL 369
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
+ME G + TY +L ++ K M+ + ALL++M L N S+ ++ +
Sbjct: 370 REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLN-------SQGYNGM 422
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
A D + D A LIQEMR + I N+ IY C + + +A ++
Sbjct: 423 I--YALCKD-----GRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE 475
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVL-AVSRDL--YETLL 580
+ E + T+ +++ + RD W D R + +L S D+ Y L+
Sbjct: 476 NLLEEGVVANGITYNTIIHA-----LLRDGR--WQDAVRLAKEMILHGCSLDVVSYNGLI 528
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK---SEFLKHHK 620
+ G +R + ++ M ++ + + + Y SE K +
Sbjct: 529 KAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERR 571
>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
Group]
gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 543
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 97/212 (45%), Gaps = 22/212 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ VIDA+ + G + A ++L M +G P ++ T+ +++ A+ K + + QMR+
Sbjct: 288 TAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQ 347
Query: 444 SCLVQNLSCEM-VVSERFSEVADKSASFTDTSSLMDKSDL--AESLIQEMREEAALSTIY 500
L CE +++ F +T +S+L A ++ M + + +
Sbjct: 348 ------LGCEPDIITYNF---------LMETHCGKGQSNLDAAMKMLTRMIAKGCIPDCH 392
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
N + + A K+Y RMQE++ +P V T Y L+ +LE D+ + I
Sbjct: 393 TFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVT-YNLLMRLFNLEKSMDMVL---RI 448
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERV 592
K+++++ + + + Y L+ F G ++R
Sbjct: 449 KKDMDAQGVEPNVNTYAALIEAFCGRGNWKRA 480
>gi|393245243|gb|EJD52754.1| hypothetical protein AURDEDRAFT_98234 [Auricularia delicata
TFB-10046 SS5]
Length = 432
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 108/271 (39%), Gaps = 28/271 (10%)
Query: 359 KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTY 418
+ +E +W + EH + C V+ + G + A D++ + AG + +
Sbjct: 138 QGTEGAWE--KVINEHKIMPDEGACIAVLHCAARHGLPQLAGDVIAQLFSAGVKPEEHHF 195
Query: 419 KSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD 478
+L+ A+ EA A L MR + + ER S AD +D
Sbjct: 196 AALVEAFAASGTLLEALAALSWMRSHKVPPTAHTAAPILERIS--AD-----------ID 242
Query: 479 KSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFY 538
K+D A +L+ ++ + + I +N + K +G A+ IY+ + + P TF
Sbjct: 243 KTDDAFNLLYDLHADGRVVDIVAMNCVVEAAAKQGDLGRAVGIYKSAGDWDLAPDTSTFN 302
Query: 539 YLVYG---HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEV 595
L+ G H +E+ I + E GV +R +ETL+ L +E
Sbjct: 303 ILLDGCRAHGQVELPERI------LAEMQERGVRPDAR-TFETLIRIALIPDQYEDAFFY 355
Query: 596 IGYMKKQNMYVDKLMYKSEFLK---HHKHLY 623
+ M+K M + +Y++ K HH Y
Sbjct: 356 LSEMEKAKMVPAQEVYEAVVRKCVVHHDSRY 386
>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 566
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/255 (18%), Positives = 109/255 (42%), Gaps = 25/255 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS- 444
VI + ++G ++ A ++++ M+ G D+ T+ L+ + K + +L+++++
Sbjct: 240 VIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDG 299
Query: 445 -CLVQNLSCEMVVSE--RFSEVADKSASFTDTSSLMDKSDL------------------A 483
C+ ++ V+S + + D A + D ++ ++ A
Sbjct: 300 VCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSA 359
Query: 484 ESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
++ Q+M L + +S I +C+ + DA+KI+ M + I+P TF ++
Sbjct: 360 VAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIII-- 417
Query: 544 HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
H+ + R L K N+ + + A +Y ++ +GG + ++ M+++
Sbjct: 418 HTFCKQNRSGEALHFLKKMNMRTDI-APQAFIYNPVIDVLCKGGKVDEANMILIEMEEKG 476
Query: 604 MYVDKLMYKSEFLKH 618
DK Y + H
Sbjct: 477 CRPDKYTYTILIIGH 491
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 87/217 (40%), Gaps = 22/217 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+NG + + S+ +L ++++ + VI + G +E A + +DM
Sbjct: 275 LVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAV 334
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSE--RFSEVADK 466
G + TY L+ Y K A A+ +QM + CL ++ ++ R ++ D
Sbjct: 335 GTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDA 394
Query: 467 SASFTDTSSLMDKSD------LAESLIQEMREEAALSTIYKL-------------NSSIY 507
+T+ + + + + + ++ R AL + K+ N I
Sbjct: 395 MKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVID 454
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
CKG + +A I M+E RP T+ L+ GH
Sbjct: 455 VLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGH 491
>gi|255661080|gb|ACU25709.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 429
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREEAAYTMFLDLKRKGNNFVDGITYSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + A L+K +R LV NL
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWAGKLMKHIRDGNLVPNL 165
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 95/216 (43%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + +NS W S+ + + GE + D+++ + + G L
Sbjct: 224 SSPYMDMLANKFTSYSQNS---WKPFSLARGVRVTAKGEDSFDLDMVNTYLSIFLAKGKL 280
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F+EA ++ + ++ +++ V+
Sbjct: 281 SVACKLFEIFTNMGVDPASYTYNSIMSSFVKKGYFKEAWSVFHAIGETVYPADIATYNVI 340
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 341 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 386
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS +D
Sbjct: 387 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLKD 422
>gi|356544457|ref|XP_003540667.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Glycine max]
Length = 711
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/280 (20%), Positives = 118/280 (42%), Gaps = 28/280 (10%)
Query: 355 KKHGKNSELSWLLLS-IKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413
+K G +++ +W + + +GE L + +I + G + A IL ++E G
Sbjct: 314 RKLGHSAKDAWQFFEKMNGKGVKWGEEVLGA-LIKSFCVEGLMSEALIILSELEKKGVSS 372
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRK----------SCLVQNLSCEM---VVSERF 460
++ Y +L+ AY K EAE L +M+ + L+ S +M +V +
Sbjct: 373 NAIVYNTLMDAYCKSNRVEEAEGLFIEMKTKGIKHTEATFNILMYAYSRKMQPEIVEKLM 432
Query: 461 SEVAD-----KSASFTDTSSLMDK----SDLAESLIQEMREEAALSTIYKLNSSIYFFCK 511
+E+ D + S+T S K SD+A +M+++ T + + I+ +
Sbjct: 433 AEMQDAGLKPNAKSYTCLISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSV 492
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV 571
A + MQ I+P++ET+ L+ + + +W ++R G
Sbjct: 493 SGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRRYKVEG---- 548
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+R + TL+ F + G+++ +VI ++ + Y
Sbjct: 549 TRVTFNTLVDGFAKHGHYKEARDVISKFANVGLHPTVMTY 588
>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Vitis vinifera]
Length = 778
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/297 (19%), Positives = 130/297 (43%), Gaps = 35/297 (11%)
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
L++ +++ ++ + ++D L + G L A D+L DM+ G + TY L+ Y
Sbjct: 230 FLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYC 289
Query: 427 KVKMFREAEALLKQMRK----------SCLVQNLSCEMVVSERF---------SEVADKS 467
K+ +EA +++ M + + L+ L E + E F + D
Sbjct: 290 KMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVV 349
Query: 468 ASFTDTSSLMDKSDLAES--LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+ T + ++ S ++E+ L++EM E+ N + ++CK + DA +M
Sbjct: 350 SYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKM 409
Query: 526 QEMKIRPTVETFYYLVYGHSSL----EMYRDITILWGDIKRNIESGVLAVSRDLYETLLL 581
+E P T+ L+ G+ E +R + + ++N++ + ++ T+L
Sbjct: 410 EESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMG---RKNMKMDSVTLN-----TILR 461
Query: 582 NFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK--HLYRRLKVSNARTEAQ 636
+ E +++ +K+ ++D++ Y + + + K ++ R LK+ + E +
Sbjct: 462 TLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKE 518
>gi|357116849|ref|XP_003560189.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Brachypodium distachyon]
Length = 737
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 23/216 (10%)
Query: 385 DVIDALIQL----GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
DV +LI++ G + A I +ME G P +++ Y ++ AY K EAE L +
Sbjct: 355 DVSASLIKMFCDEGLKKEALIIQSEMERRGIPSNTSIYNEIVNAYCKCSQIEEAEGLFVE 414
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
M++ L + ++ + +S + ++ ESL+ EM +
Sbjct: 415 MKEKGLKPTIVTYNILMDAYSRRL--------------QPEVVESLLLEMHDLGLQPNAR 460
Query: 501 KLNSSIYFFCKGKMIGD-ALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD 559
N I + + K + + A + RM+ I+PT ++ L+ ++ Y I + D
Sbjct: 461 SYNCLISAYGRQKKMSEKAEDAFLRMKADGIKPTSSSYTSLLCAYAVNGQYEKAHITYVD 520
Query: 560 IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEV 595
+K+ L S + Y LL F + G +++ME
Sbjct: 521 MKKE----RLKPSLETYTALLDIFRRAGDTDKLMET 552
>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g19440, chloroplastic-like [Cucumis sativus]
Length = 799
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 100/233 (42%), Gaps = 28/233 (12%)
Query: 335 FRNGKLLHSNRAMAKLINGYKKHGKNSELSWL---LLSIKKEHHSFGESTLCSDVIDALI 391
F+ L+ + ++ GY K + ++ L LLS K E +S + + +I A
Sbjct: 561 FKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSI----VYNIIIKAHC 616
Query: 392 QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
Q G + AA +L++M+ G + TY SL+ + + +A+ L+ +MRK V N+
Sbjct: 617 QNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVV 676
Query: 452 CEMVVSERFSEVA--DKSAS--------------FTDTSSL-----MDKSDLAESLIQEM 490
C + + ++ D + S FT T + + + A +L+ +M
Sbjct: 677 CYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKM 736
Query: 491 REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+E + + N FCK + +A K+ +M + T+ LV+G
Sbjct: 737 KESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 789
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 116/292 (39%), Gaps = 26/292 (8%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
+ +IN K GK L + ++K S T + +I+ L Q G L+ A ++ +
Sbjct: 222 SFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTY-NCIINGLCQNGRLDNAFELKEK 280
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS---------CEMVV 456
M + G + TY +L+ K+ F + +L +M + N+ C+M
Sbjct: 281 MTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGN 340
Query: 457 SERFSEVADK--SASFTDTS----SLM------DKSDLAESLIQEMREEAALSTIYKLNS 504
E ++ D S + T TS SLM D+ + AE+ ++E+ S
Sbjct: 341 IEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYS 400
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
+++ CK A + + M RP+ LV G + + T LW R +
Sbjct: 401 VVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELW---FRLL 457
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFL 616
E G A S+ L+ G ++ M ++ + +D++ Y + L
Sbjct: 458 EKGSPA-SKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALIL 508
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 95/233 (40%), Gaps = 26/233 (11%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
S+ + L+ G K GK+ E + L + E S + +I L G L A I
Sbjct: 429 SDLLLTMLVCGLCKDGKHLEATELWFRLL-EKGSPASKVTSNALIHGLCGAGKLPEASRI 487
Query: 403 LDDMELAGHPMDSTTYKSLLTAYY---KVK-MFREAEALLKQ------------MRKSCL 446
+ +M G PMD TY +L+ + KV+ FR E + K+ +R C
Sbjct: 488 VKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCN 547
Query: 447 VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE--EAALSTIYKLNS 504
V L + + + F A S T +M + + I+++ LS +LNS
Sbjct: 548 VGKLDDAIKLWDEFK--ASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNS 605
Query: 505 SIYFF-----CKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+Y C+ + AL++ M+ I P T+ L++G ++ + D
Sbjct: 606 IVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVED 658
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 48/249 (19%), Positives = 97/249 (38%), Gaps = 25/249 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL-----KQ 440
++ L +G L+ A + D+ + +G + TY ++ Y K + E L K+
Sbjct: 541 LLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKK 600
Query: 441 MRKSCLVQNL-------------SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES-- 485
M + +V N+ + +++ + + + A+++ + L E
Sbjct: 601 MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAK 660
Query: 486 -LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
LI EMR+E + + + I +CK + A + M I P T+ ++ G+
Sbjct: 661 HLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGY 720
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
L L +K ESG++ Y L F + + +V M + +
Sbjct: 721 CKLGNMEKANNLLIKMK---ESGIVP-DVVTYNVLTNGFCKANDMDNAFKVCDQMATEGL 776
Query: 605 YVDKLMYKS 613
VD++ Y +
Sbjct: 777 PVDEITYTT 785
>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
Length = 614
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 107/268 (39%), Gaps = 27/268 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K + S+ LL S+K S T + ++D L + + AA ++L +M A
Sbjct: 197 LIDGLCKANRVSQAVELLESMKARGCSPDVITY-TILVDGLCKESKVAAAWEVLREMLDA 255
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVSE--RFSEVADK 466
G + TY SLL + + +A AL++ M + C ++ ++ + V D
Sbjct: 256 GCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDA 315
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
A D ++DK + +I M I CK + +++ + RR
Sbjct: 316 CAMLAD---MIDKGGTPDLMIYNML--------------INGLCKADQVDESIALLRRAV 358
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQ 585
I+P V T+ ++YG + L +K R V+ LY TL+ +
Sbjct: 359 SGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVI-----LYSTLIDGLCK 413
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G + ++ M D + Y +
Sbjct: 414 AGKVDEAFDLYEVMAGDGCDADVVTYST 441
Score = 42.7 bits (99), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 24/203 (11%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ LI+G K GK E ++ L + + S +ID L + G ++ AH +L M
Sbjct: 405 STLIDGLCKAGKVDE-AFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMV 463
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADK 466
G P + TY SL+ + EA L+++M R +C ++ +++
Sbjct: 464 RMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCR----- 518
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEA------ALSTIYKLNSSIYFFCKGKMIGDALK 520
M++ D A L+++ + AL TI +S I CK + +AL
Sbjct: 519 ----------MERVDSAVVLLEQAKARCVAAGGTALDTI-AYSSLIDGLCKAGRVAEALD 567
Query: 521 IYRRMQEMKIRPTVETFYYLVYG 543
++ M + + P T+ L+ G
Sbjct: 568 YFQEMIDNGVIPDHITYSILLEG 590
Score = 42.7 bits (99), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 86/219 (39%), Gaps = 24/219 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM-EL 408
LI+G K+ + L +K S T + ++D L + G LE A + +M +
Sbjct: 120 LIDGLCKNNEPDRAQELFEHMKSVECSPSMVTY-NTLLDGLFRTGKLERAMALFQEMLDR 178
Query: 409 AGHPMDS------TTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVSERFS 461
H MD TY L+ K +A LL+ M+ + C ++ ++V
Sbjct: 179 RSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCK 238
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
E K A +++EM + + + NS ++ C+ + + DAL +
Sbjct: 239 E---------------SKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALAL 283
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
R M P V T+ L+ G + +D + D+
Sbjct: 284 MRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADM 322
>gi|413953500|gb|AFW86149.1| hypothetical protein ZEAMMB73_846563 [Zea mays]
Length = 1039
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 354 YKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413
Y K G++ E S + +K++ G+ + S +I+A G A + +M+ GH
Sbjct: 826 YGKAGRHQEASLMFKRMKEDGIRPGKISFNS-MINAYATSGLFSEAKSVFQEMQDCGHAP 884
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
DS +Y +L+ AY + K++ EAE ++ M S SC
Sbjct: 885 DSFSYLALIRAYTEAKLYTEAEEAIRTMTLSSSNTTPSC 923
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 19/211 (9%)
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
AG P + TY ++ + K + EA L +MR+ RF +
Sbjct: 272 AGAPPNQFTYTVVIGSLVKEDLLEEAVDLFGEMRR--------------RRFVPEEATYS 317
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
SS K + A L +EM+ + + Y S + CK + AL ++ M+
Sbjct: 318 LLISASSRHGKGEQALRLFEEMKGQGIAPSNYTCASLLALHCKNEDYPKALALFSDMESS 377
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588
K+ P + L+ + L +Y + +G+I++ +G+L Y + L G
Sbjct: 378 KVIPDEVIYGILIRIYGKLGLYEEARQTFGEIEK---AGLLN-DEQTYVAMAQVHLNAGD 433
Query: 589 FERVMEVIGYMKKQNMYVDKLMYKSEFLKHH 619
+R +EV+ MK + + + Y S L+ H
Sbjct: 434 CDRALEVLESMKTRGVKPSRFSY-SALLRCH 463
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/218 (19%), Positives = 94/218 (43%), Gaps = 15/218 (6%)
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
R+ + LI+G K G + + L +K++ ++ + VID + G + A+ +L+
Sbjct: 587 RSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHL-DTRAYNIVIDGFCKSGKVNKAYQLLE 645
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
+M+ G TY S++ K+ EA L ++ + + N+ + + F +V
Sbjct: 646 EMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVG 705
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
+ D A +++E+ ++ Y N + K + I +AL ++
Sbjct: 706 --------------RIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQN 751
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
M+ +K P T+ +V G + + + W ++++
Sbjct: 752 MKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQK 789
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/214 (19%), Positives = 87/214 (40%), Gaps = 24/214 (11%)
Query: 393 LGFLEAAHD------ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL 446
+G L AAH+ +L M+ G+ + + +L+ + + A +LL +M+ +
Sbjct: 209 IGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSF 268
Query: 447 VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506
+L V + F +V K D+A E++ + + S I
Sbjct: 269 NADLVLYNVCIDCFGKVG--------------KVDMAWKFFHELKSQGLVPDDVTFTSMI 314
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566
CK + + +A++++ + K P V + ++ G+ S+ + + L ++R
Sbjct: 315 GVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSL---LERQKRK 371
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
G + S Y +L + G E + ++ MK
Sbjct: 372 GCIP-SVIAYNCILTCLGRKGKVEEALRILEAMK 404
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 110/264 (41%), Gaps = 39/264 (14%)
Query: 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG 410
I+ + K GK +++W K H L D + +G L A + + +EL
Sbjct: 279 IDCFGKVGK-VDMAW------KFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELF- 330
Query: 411 HPMDST-------TYKSLLTAYYKVKMFREAEALL-KQMRKSCL--VQNLSCEMVVSERF 460
+DS Y +++ Y V F EA +LL +Q RK C+ V +C + R
Sbjct: 331 EELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRK 390
Query: 461 SEVA-----------DKSASFTDTSSLMD----KSDLAESL-IQEMREEAAL-STIYKLN 503
+V D + + T + L+D +L +L +Q+ +EA L I +N
Sbjct: 391 GKVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVN 450
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
I CK + + +A I+ + P TF L+ G D +L+ ++
Sbjct: 451 IMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLY---EKM 507
Query: 564 IESGVLAVSRDLYETLLLNFLQGG 587
++SG + +Y +L+ NF + G
Sbjct: 508 LDSGQTP-NAVVYTSLIRNFFKCG 530
>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
Length = 599
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 103/262 (39%), Gaps = 38/262 (14%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
E+ CS +I G EAA + + Y S++ AY + EALL
Sbjct: 87 EAVFCS-IISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALL 145
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVAD-----------KSASFTDTSS--------LMDK 479
QM + NL V F+E+ D K+ + T++
Sbjct: 146 AQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKA 205
Query: 480 SDLAESL--IQEMREEAALSTIYKLNSSIYF-----FCKGKMIGDALKIYRRMQEMKIRP 532
++A++L ++EM + N IY + +G A K++ M ++P
Sbjct: 206 GNMAKALDILEEMDKHGV-----SPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKP 260
Query: 533 TVETFYYLVYGH-SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFER 591
+ + LV+ + M + + +L NIE+ L + + Y ++L +++GG ++
Sbjct: 261 DIVIYNILVHAFCKAGRMDKALGVL-----ENIEANRLLPTIETYTSILDGYVKGGNIQK 315
Query: 592 VMEVIGYMKKQNMYVDKLMYKS 613
+EV +K + + Y S
Sbjct: 316 ALEVFDRIKTAGLRPGVVSYNS 337
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/233 (17%), Positives = 97/233 (41%), Gaps = 24/233 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ ++D ++ G ++ A ++ D ++ AG +Y SLL+ K + A +L +M
Sbjct: 301 TSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLA 360
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ +V N ++E ++ D +F + Q M++E I
Sbjct: 361 NGVVPNERSYTALTEGYARAGDVEKAF--------------GMFQRMKKENLAIDIVAYG 406
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEMYRDITILWGDI 560
+ + CK + A ++++++ + ++ T+ ++ G L RD L D+
Sbjct: 407 ALLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARD---LLNDM 463
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+++ + Y + + + G E V E + M+++ + V+ Y +
Sbjct: 464 QKH----GFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTT 512
>gi|255661096|gb|ACU25717.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 308
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSF--GESTLCSDVIDALIQL----GFL 396
S+ M L N + H S SW S+ + GE + D+++ + + G L
Sbjct: 103 SSPYMDMLANKFTSH---SPRSWKSFSLARGVRVMAKGEDSFEIDMVNTYLSIFLAKGEL 159
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F+EA ++L M ++ +++ V+
Sbjct: 160 SVACKLFEIFTNMGVDPVSYTYNSIMSSFVKKGYFKEAWSVLHAMGETVNPADIATYNVI 219
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA +++++ +E I N+ I K I
Sbjct: 220 IQGLGK--------------MGRADLANVVLEKLMKEGGYLDIVMYNTLINALGKAGRID 265
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS +D
Sbjct: 266 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLKD 301
>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 641
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 21/221 (9%)
Query: 326 MEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD 385
ME K LV + L+ GY + GK + LL +KK + ++ +
Sbjct: 263 MEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASF-TI 321
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
+I + + ++ A I +M+ +G D TY +L++ + K +A +L M +K
Sbjct: 322 LIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKG 381
Query: 445 CLVQNLS--CEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
LS C M+ E+ E+ + LI+EMR+ + +
Sbjct: 382 HDPSQLSYLCIMMAHEKKEELEE-----------------CMELIEEMRKIGCVPDLNIY 424
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
N+ I CK + +A++++ MQ + P ++T+ +V+G
Sbjct: 425 NTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHG 465
>gi|413953460|gb|AFW86109.1| hypothetical protein ZEAMMB73_051838 [Zea mays]
Length = 240
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 33/241 (13%)
Query: 380 STLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK 439
S + S ++D+ G+ +A +L++M+ G P Y SL+ A K K + A L +
Sbjct: 12 SPILSLLMDSAKPTGWRKAMM-LLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQ 70
Query: 440 QMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499
+++++C + V+ + + + D A ++ EM + +
Sbjct: 71 ELKENCGSSSARVYAVMIKHLGKAG--------------RLDDAINMFDEMNKLGCAPDV 116
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-------HSSLEMYRD 552
Y N+ + + MI +AL RRMQE P + ++ ++ G H ++EM
Sbjct: 117 YAYNALMSGLARTGMIDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEML-- 174
Query: 553 ITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
N++ ++ Y T+L G FE +++ M D + Y
Sbjct: 175 ---------SNMKQSTVSPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYS 225
Query: 613 S 613
S
Sbjct: 226 S 226
>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Glycine max]
Length = 583
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 26/180 (14%)
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK----VKMFREAEALLKQMR 442
I+ L + G L A D+++D++ G + TY +L+ + K KM+R A+A+LK+M
Sbjct: 207 INGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYR-ADAILKEML 265
Query: 443 KSCLVQNLSCEMVVSERFSE----VADKSA-----------------SFTDTSSLMDKSD 481
+ + N + + F + +A K+A S + S K D
Sbjct: 266 ANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLD 325
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
A +L +M I N+ I FCK KMI +A K++ + E + P TF ++
Sbjct: 326 EAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMI 385
>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
Length = 554
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 119/299 (39%), Gaps = 42/299 (14%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID I+ G LEA + D M G ++ TY LL+ + E ALL +M
Sbjct: 104 MIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQK 163
Query: 446 LVQNLSCEMVVSERFSEVADKSA-------------SFTD-TSSLM-------DKSDLAE 484
+V + ++ + S D A + D T S++ K +AE
Sbjct: 164 MVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAE 223
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
++Q + + T N+ I +C+ + A + +M+ I+P T+ L+ G
Sbjct: 224 EVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGL 283
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
E + L +++ N GV + + + TL+ + + G E+ V+ M++ +
Sbjct: 284 CKAERITNAQDLLMEMQDN---GV-NPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 339
Query: 605 YVDKLMYKS---EFLKH--------------HKHLYRRLKVSNARTEAQSKRLVNVQAF 646
+ + Y S F K+ HK + +V NA +A + N QAF
Sbjct: 340 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAF 398
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 88/394 (22%), Positives = 158/394 (40%), Gaps = 58/394 (14%)
Query: 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGV-VADAHSI-IILAQIHEMNCQRDEL 231
+PDT +N + ACV G + ++ M + G +A S +++A + D +
Sbjct: 24 RPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAV 83
Query: 232 KKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQD 291
+ F ++ P +H Y +++ H K D++A R R+ + L+ +
Sbjct: 84 EVFDEMTERAVLP--NHIT--YNTMIDGHIKGGDLEAG-------FRLRDQMVCHGLKPN 132
Query: 292 AQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKM--EGKQELVLF----RNGKLLHSNR 345
A ++ G R G ++ LL++ + KM +G +LF RNG ++
Sbjct: 133 AITYNVLLSGL--CRAG-RMGETSALLDEMASQKMVPDGFTYSILFDGLSRNG----DSK 185
Query: 346 AMAKLINGYKKHG---KNSELSWLLLSIKKEHH-SFGESTLCSDV--------------I 387
AM L Y K+G + S LL + K+ S E L S V I
Sbjct: 186 AMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLI 245
Query: 388 DALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLV 447
+ Q G LE A M+ D TY +L+ K + A+ LL +M+ + +
Sbjct: 246 NGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVN 305
Query: 448 QNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIY 507
+ E F+ + D ++ T L +K + ++ EM+E + S +
Sbjct: 306 PTV-------ETFNTLID---AYGRTGQL-EKCFI---VLSEMQENGLKPNVVSYGSIVN 351
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
FCK I +A+ I M + P + + ++
Sbjct: 352 AFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAII 385
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 107/270 (39%), Gaps = 31/270 (11%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
I+G K G+ E S L+ + E + + +ID G L+ A+ D+M
Sbjct: 292 FISGLCKEGRLEEASGLICKML-EGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISK 350
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G TY + A + +A+ ++K+MR+ ++ + ++ + D +
Sbjct: 351 GIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRA 410
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
F L+ EM + T+ S IY K + +A ++ ++Q+
Sbjct: 411 F--------------GLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEG 456
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI----ESGVLAVSRD--LYETLLLNF 583
+ P + F L+ GH + G+I R E + V D Y TL+ +
Sbjct: 457 LLPDIIVFNALIDGHCA----------NGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGY 506
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ G E +++ MK++ + D + Y +
Sbjct: 507 CREGKVEEARQLLDEMKRRGIKPDHISYNT 536
>gi|449444614|ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Cucumis sativus]
gi|449528063|ref|XP_004171026.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Cucumis sativus]
Length = 536
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 14/159 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I G L +A + ME G P D T+ +L+ + KV +EA L +M+
Sbjct: 279 LIAGYCNKGLLSSAMKLRSVMEKNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEMKGMS 338
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L ++ +S+ + ++ L +EM + I N+
Sbjct: 339 LSPTTVTYNILINGYSKAGN--------------CEMGNRLFEEMSRFQVKADILTYNAL 384
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
I CK A + R + E + P TF L+YG
Sbjct: 385 ILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALIYGQ 423
>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
Length = 862
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 79/180 (43%), Gaps = 21/180 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID L + ++ A +L M G +D TY +++ K + AE +L+ M
Sbjct: 205 IIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHM---- 260
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ + + ++V + K+ + D AE ++Q M ++ + N+
Sbjct: 261 IDKGVKPDVVTYNTIIDGLCKAQAV----------DRAEGVLQHMIDKGVKPDVVTYNTI 310
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I CK + + A + + M + ++P ++T+ L++G+ S T W ++ R +E
Sbjct: 311 IDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLS-------TGEWKEVVRRLE 363
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 85/232 (36%), Gaps = 42/232 (18%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSC 452
G + A +LD M G D +Y +LL Y K A L ++M RK ++
Sbjct: 598 GRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTY 657
Query: 453 EMVV-----SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIY 507
++ + RFSE A+ L M + IY N +
Sbjct: 658 STILQGLFHTRRFSE--------------------AKELYLNMIKSGQQWDIYTYNIILN 697
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG------DIK 561
CK + +A KI++ + +RP + TF ++ D+ G D+
Sbjct: 698 GLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMI----------DVLFKGGRKKDAMDLF 747
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+I S L + Y ++ N +Q G + + M+K D +M +
Sbjct: 748 ASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNA 799
>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Cucumis sativus]
Length = 822
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 100/233 (42%), Gaps = 28/233 (12%)
Query: 335 FRNGKLLHSNRAMAKLINGYKKHGKNSELSWL---LLSIKKEHHSFGESTLCSDVIDALI 391
F+ L+ + ++ GY K + ++ L LLS K E +S + + +I A
Sbjct: 584 FKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSI----VYNIIIKAHC 639
Query: 392 QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
Q G + AA +L++M+ G + TY SL+ + + +A+ L+ +MRK V N+
Sbjct: 640 QNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVV 699
Query: 452 CEMVVSERFSEVA--DKSAS--------------FTDTSSL-----MDKSDLAESLIQEM 490
C + + ++ D + S FT T + + + A +L+ +M
Sbjct: 700 CYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKM 759
Query: 491 REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+E + + N FCK + +A K+ +M + T+ LV+G
Sbjct: 760 KESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 812
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 116/292 (39%), Gaps = 26/292 (8%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
+ +IN K GK L + ++K S T + +I+ L Q G L+ A ++ +
Sbjct: 245 SFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTY-NCIINGLCQNGRLDNAFELKEK 303
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS---------CEMVV 456
M + G + TY +L+ K+ F + +L +M S N+ C+M
Sbjct: 304 MTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGN 363
Query: 457 SERFSEVADK--SASFTDTS----SLM------DKSDLAESLIQEMREEAALSTIYKLNS 504
E ++ D S + T TS SLM D+ + AE+ ++E+ S
Sbjct: 364 IEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYS 423
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
+++ CK A + + M RP+ LV G + + T LW R +
Sbjct: 424 VVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELW---FRLL 480
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFL 616
E G A S+ L+ G ++ M ++ + +D++ Y + L
Sbjct: 481 EKGSPA-SKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALIL 531
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 26/243 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
S+ + L+ G K GK+ E + L + E S + +I L G L A I
Sbjct: 452 SDLLLTMLVCGLCKDGKHLEATELWFRLL-EKGSPASKVTSNALIHGLCGAGKLPEASRI 510
Query: 403 LDDMELAGHPMDSTTYKSLLTAYY---KVK-MFREAEALLKQ------------MRKSCL 446
+ +M G PMD TY +L+ + KV+ FR E + K+ +R C
Sbjct: 511 VKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCN 570
Query: 447 VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE--EAALSTIYKLNS 504
V L + + + F A S T +M + + I+++ LS +LNS
Sbjct: 571 VGKLDDAIKLWDEFK--ASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNS 628
Query: 505 SIYFF-----CKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD 559
+Y C+ + AL++ M+ I P T+ L++G ++ + D L +
Sbjct: 629 IVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDE 688
Query: 560 IKR 562
+++
Sbjct: 689 MRK 691
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 48/249 (19%), Positives = 97/249 (38%), Gaps = 25/249 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL-----KQ 440
++ L +G L+ A + D+ + +G + TY ++ Y K + E L K+
Sbjct: 564 LLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKK 623
Query: 441 MRKSCLVQNL-------------SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES-- 485
M + +V N+ + +++ + + + A+++ + L E
Sbjct: 624 MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAK 683
Query: 486 -LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
LI EMR+E + + + I +CK + A + M I P T+ ++ G+
Sbjct: 684 HLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGY 743
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
L L +K ESG++ Y L F + + +V M + +
Sbjct: 744 CKLGNMEKANNLLIKMK---ESGIVP-DVVTYNVLTNGFCKANDMDNAFKVCDQMATEGL 799
Query: 605 YVDKLMYKS 613
VD++ Y +
Sbjct: 800 PVDEITYTT 808
>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Glycine max]
Length = 1078
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 98/247 (39%), Gaps = 18/247 (7%)
Query: 361 SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS 420
S +LLL + + + + +I ++ G +E A + D+M L +S TY +
Sbjct: 261 SAKGYLLLKRMRRNMVYPNEITYNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNT 320
Query: 421 LLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS 480
L+ + EA L+ M L N E+ + + K+A F SS++++
Sbjct: 321 LIAGHCTTGNIGEALRLMDVMVSHGLRPN---EVTYGALLNGLY-KNAEFGMVSSILERM 376
Query: 481 DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
+ + + A + + CK M+ +A+++ M ++ + P V TF L
Sbjct: 377 RMGGVRVSHISYTAMIDGL----------CKNGMLEEAVQLLDDMLKVSVNPDVVTFSVL 426
Query: 541 VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
+ G + + +I + L + LY TL+ N+ + GY + + M
Sbjct: 427 INGFFRVGKINNAK----EIMCKMYKTGLVPNGILYSTLIYNYCKMGYLKEALNAYAVMN 482
Query: 601 KQNMYVD 607
D
Sbjct: 483 HSGHVAD 489
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 69/342 (20%), Positives = 131/342 (38%), Gaps = 40/342 (11%)
Query: 321 DSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES 380
D +LK+ ++V F + LING+ + GK + ++ + K
Sbjct: 409 DDMLKVSVNPDVVTF------------SVLINGFFRVGKINNAKEIMCKMYKTG-LVPNG 455
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
L S +I ++G+L+ A + M +GH D T L+ + + EAE +
Sbjct: 456 ILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATFCRYGKLEEAEYFMNH 515
Query: 441 MRK----------SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEM 490
M + C++ + FS V DK SF SL L + L
Sbjct: 516 MSRMGLDPNSVTFDCIINGYGNSGDALKAFS-VFDKMNSFGHFPSLFTYGGLLKGLCIGG 574
Query: 491 REEAALSTIYKL------------NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFY 538
AL ++L N+ + C+ + DA+ + M P T+
Sbjct: 575 HINEALKFFHRLRCIPNAVDNVIFNTKLTSTCRSGNLSDAIALINEMVTNDFLPDNFTYT 634
Query: 539 YLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGY 598
L+ G +L G + IE G+L+ + +Y +L+ L+ G+ + +
Sbjct: 635 NLIAGLCKKGKIVAALLLSG---KAIEKGLLSPNPAVYTSLVDGLLKHGHARAALYIFEE 691
Query: 599 MKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRL 640
M +++ D + + + + + + KV++ + +SK L
Sbjct: 692 MLNKDVEPDTVAF-NVIIDQYSRKGKTSKVNDILSTMKSKNL 732
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 118/301 (39%), Gaps = 35/301 (11%)
Query: 170 AELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRD 229
A+ I PD FN++L+A G ++ M ++GV A + L + C++
Sbjct: 168 AKGICPDVATFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWY---CKKG 224
Query: 230 ELKKFKCYIDQLSTPF----AHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPN 285
K ID +++ Y F ++L D A G L+L R PN
Sbjct: 225 RYKAASQLIDCMASKGIGVDVCTYNVFIDNLCR-----DSRSAKGYLLLKRMRRNMVYPN 279
Query: 286 PKLRQDAQKPYL----ISIGSPNLRCGLKLQIMPELLEKDSILKM--------EGKQELV 333
++ I + + ++P + ++++ E + +
Sbjct: 280 EITYNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMD 339
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLL-----LSIKKEHHSFGESTLCSDVID 388
+ + L + L+NG K+ + +S +L ++ H S+ + +ID
Sbjct: 340 VMVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSHISY------TAMID 393
Query: 389 ALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQ 448
L + G LE A +LDDM D T+ L+ +++V A+ ++ +M K+ LV
Sbjct: 394 GLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMYKTGLVP 453
Query: 449 N 449
N
Sbjct: 454 N 454
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 25/255 (9%)
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
++ + + +ID + G L A + D+M G MD TY + L K KMF +A+ L
Sbjct: 431 DNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLF 490
Query: 439 KQM----------------RKSCLVQNLSCEMVVSE---RFSEVADKSASFTDTSSLMDK 479
+M R C N+ + + E R + DK T
Sbjct: 491 NEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKA 550
Query: 480 SDL--AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
++ A+ L +M + + + + FC ++ +AL + +M E IRP + T
Sbjct: 551 GEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTC 610
Query: 538 YYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIG 597
L+ G+ D+ + + + I +G++ S Y TL+ +L+ E+ +I
Sbjct: 611 NTLIKGYCR---SGDMPKAYEYLSKMISNGIIPDSFS-YNTLIDGYLKEANLEKAFILIN 666
Query: 598 YMKKQNMYVDKLMYK 612
M+K+ + + + Y
Sbjct: 667 EMEKRGLQFNIITYN 681
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 110/286 (38%), Gaps = 28/286 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LIN Y + G E LL S G T + ++ L ++G + A D+L +M
Sbjct: 298 LINAYCREGLVEEAFQLLNSFSSRGMEPGLLTY-NAILYGLCKIGKYDRAKDVLIEMLQL 356
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVS----------- 457
G ++ TY +LL + EA+ + +M R+ L +S ++
Sbjct: 357 GLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQA 416
Query: 458 -------ERFSEVADKSASFTDTSSLMDKSDLAESLI--QEMREEAALSTIYKLNSSIYF 508
ER V D L+++L EM + N+ +
Sbjct: 417 LMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNG 476
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH-SSLEMYRDITILWGDIKRNIESG 567
CK KM DA ++ M E + P TF L+ G+ M + + + ++ N++
Sbjct: 477 LCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKP- 535
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ Y TL+ F + G R E+ M ++++ D + Y +
Sbjct: 536 ----DKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGT 577
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 84/429 (19%), Positives = 164/429 (38%), Gaps = 53/429 (12%)
Query: 157 DVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSI- 215
+ F L++ S G E P + +N +L+ + G + + ++ M Q G+ +A +
Sbjct: 310 EAFQLLNSFSSRGME---PGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYN 366
Query: 216 IILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILD 275
+L +I C+RD + + + D++S + L+S + G L
Sbjct: 367 TLLVEI----CRRDNILEAQEIFDEMSR------RGVLPDLVSFSSLIGVLARNGHLYQA 416
Query: 276 MNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILK-------MEG 328
+ +RE + + + LI N L++ E+L + + + G
Sbjct: 417 LMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNG 476
Query: 329 KQELVLFRNGKLLHSN---RAM-------AKLINGYKKHGKNSELSWLLLSIKKEHHSFG 378
+ +F + +L + R M LI GY K G + L ++ + +
Sbjct: 477 LCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPD 536
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
+ T + +ID + G + A ++ DDM D +Y ++L + + EA L
Sbjct: 537 KVTY-NTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLC 595
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES------------- 485
QM + + NL + + + D ++ S ++ + +S
Sbjct: 596 DQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKE 655
Query: 486 --------LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
LI EM + I N + FC + +A ++ R+M E+ I P T+
Sbjct: 656 ANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATY 715
Query: 538 YYLVYGHSS 546
L+ GH S
Sbjct: 716 SSLINGHVS 724
>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 717
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 99/229 (43%), Gaps = 20/229 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ ++D+ + G ++ A ++L +M+ G + TY L+ K +A+ L+++M
Sbjct: 219 NTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLN 278
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
S L N+S + ++ + + F ++ DL E EM A T+ N
Sbjct: 279 SGL--NVS-----AYTYNPLIN---GFCQKGLFVEAFDLVE----EMVNRRAFPTLSTYN 324
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-R 562
+ +Y CK + + M + K P + +F L+YG+ + +L+ ++K R
Sbjct: 325 TLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCR 384
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
++ V+ Y TL+ GY + + + M Q ++ D Y
Sbjct: 385 DLVPTVIT-----YNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTY 428
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 27/177 (15%)
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL 446
+ AL Q G E A D+L++M G D TY S++ + K R+A + +M
Sbjct: 502 VHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLS--- 558
Query: 447 VQNLSCEMVVSERFSEVADKSASFT---DTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
VA ++T + DLA +M E++ + + N
Sbjct: 559 --------------KGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYN 604
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV-------YGHSSLEMYRDI 553
+ I C + + +A K + M+E I P ++ L+ Y +L +YR++
Sbjct: 605 AIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREM 661
>gi|255578090|ref|XP_002529915.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530592|gb|EEF32469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 636
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 125/293 (42%), Gaps = 26/293 (8%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
S+ + L++ Y + G + LL +K+ + S +I + +Q+ + A +
Sbjct: 189 SHESYTALLSAYGRSGLLDKAFSLLEEMKRNPDCQPDVHTYSILIKSCVQVFAFDKAKTL 248
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM--RKSCLVQ-----------N 449
L +ME G ++ TY +L+ AY K KMF E EA L +M +++C
Sbjct: 249 LSNMESLGISPNTITYNTLIDAYGKAKMFEEMEATLVKMLSQQNCEPDVWTMNSTLRAFG 308
Query: 450 LSCEMVVSERFSEV---ADKSASFTDTSSLMDKSDLA------ESLIQEMREEAALSTIY 500
+S ++ E+ E A S + L+D A ++++ M++ TI
Sbjct: 309 ISGQIETMEKCYEKFQGAGIEPSIMTFNVLLDSYGKAGDYKKMSAVMEYMQKYHYSWTII 368
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
N I F + + ++R M+ +I+P+ T LV + E I +
Sbjct: 369 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGQAEKPEKIE----GV 424
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
R IE+ + + + L+ + + G F + V+ M+++ DK+ Y++
Sbjct: 425 LRFIENSDITLDTVFFNCLVDAYGRMGCFAEMKGVLILMEQKGYRPDKITYRT 477
>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 817
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 114/250 (45%), Gaps = 27/250 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID ++G L+AA + + M+ + T+ SLL+ K++ +EA +LLK+M +
Sbjct: 252 LIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNG 311
Query: 446 LVQN-----------LSCE-----MVVSERFSEVADKSASFTDTSSL-----MDKSDLAE 484
+ + L C+ M + E+ +E + ++T + L K + AE
Sbjct: 312 FMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAE 371
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
++++ E ++ N+ + +C+ + A+ RM+ +RP TF L+
Sbjct: 372 EILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKF 431
Query: 545 SSL-EMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
+ EM D W +K+ E GV S + Y TL+ + + F+R +++ M++
Sbjct: 432 CDMKEM--DKAEEW--VKKMAEKGVTP-SVETYNTLIDGYGKLCTFDRCFQILEQMEEIG 486
Query: 604 MYVDKLMYKS 613
+ + + Y S
Sbjct: 487 VKPNVVSYGS 496
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 110/268 (41%), Gaps = 30/268 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM---- 441
+ID +L + IL+ ME G + +Y SL+ K EAE +L+ M
Sbjct: 462 LIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRG 521
Query: 442 ------------RKSCLVQNLSCEMVVSERF--SEVADKSASFTD-TSSLMDKSDL--AE 484
SC+V + + + SE++ ++ L K L AE
Sbjct: 522 VLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAE 581
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ ++ + NS I + + L +Y M+ + I+PTV T++ L+ G
Sbjct: 582 DFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGC 641
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
S E + L+ ++ ++ +L R +Y ++ + + G ++ + M Q +
Sbjct: 642 SK-EGIELVEKLYNEM---LQMNLLP-DRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGI 696
Query: 605 YVDKLMYKSEFLKHHKHLYRRLKVSNAR 632
+ DK+ Y S L H +R K+SN +
Sbjct: 697 HPDKMTYNSLILGH----FREGKLSNIK 720
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 81/406 (19%), Positives = 155/406 (38%), Gaps = 49/406 (12%)
Query: 176 DTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFK 235
D +I+N ++ R G K +E M G+ ++ I + + C E+ K +
Sbjct: 385 DEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNS---ITFNSLIDKFCDMKEMDKAE 441
Query: 236 CYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKP 295
++ +++ + Y +L+ + K D +++ ++ + KP
Sbjct: 442 EWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQIL------------EQMEEIGVKP 489
Query: 296 YLISIGS-PNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGY 354
++S GS N C + E++ +D I + +L + + LI+G
Sbjct: 490 NVVSYGSLINCLCKDGKILEAEIVLRDMICR-------------GVLPNAQVYNMLIDGS 536
Query: 355 KKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMD 414
GK + + + S T + +ID L + G L A D L + +GH D
Sbjct: 537 CMVGKVKDALRFFDEMMRSEISPTLVTY-NVLIDGLCKKGKLTEAEDFLTQITSSGHSPD 595
Query: 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTS 474
TY SL++ Y + L + M+ NL + V ++ S
Sbjct: 596 VITYNSLISGYANAGNVSKCLGLYETMK------NLGIKPTVRTYHPLISGCSK------ 643
Query: 475 SLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
+ +L E L EM + L N+ I+ + + A +++ M + I P
Sbjct: 644 ---EGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDK 700
Query: 535 ETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLL 580
T+ L+ GH +I D+ N+++ LA D Y+ L+
Sbjct: 701 MTYNSLILGHFREGKLSNIK----DLVNNMKAKELAPKADTYDILV 742
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/250 (20%), Positives = 102/250 (40%), Gaps = 35/250 (14%)
Query: 373 EHHSFGEST-LCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMF 431
E+ F T + + I A ++L L+ + LD M G + Y L+ + K
Sbjct: 168 ENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRI 227
Query: 432 REAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491
R+AE + +M LV ++ + + + +V + A+F + + M+
Sbjct: 228 RDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAF--------------KMRERMK 273
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV-------YGH 544
E++ I NS + CK + + +A + + M+ P T+ L G+
Sbjct: 274 EKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGN 333
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL-QGGYFERVMEVIGYMKKQN 603
++E+Y T E G+ + ++LLN L + G E+ E++ +
Sbjct: 334 GAMELYEQAT----------EKGIRI--NNYTGSILLNGLCKQGKVEKAEEILKKFTENG 381
Query: 604 MYVDKLMYKS 613
+ D+++Y +
Sbjct: 382 LVADEVIYNT 391
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 14/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +++ L + G +E A +IL G D Y + + Y ++ +A +++M
Sbjct: 355 SILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMES 414
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
L N S F+ + DK F D M + D AE +++M E+ ++ N
Sbjct: 415 FGLRPN-------SITFNSLIDK---FCD----MKEMDKAEEWVKKMAEKGVTPSVETYN 460
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+ I + K +I +M+E+ ++P V ++ L+
Sbjct: 461 TLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLI 498
>gi|255541714|ref|XP_002511921.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549101|gb|EEF50590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 248
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 36/222 (16%)
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF------LEAAHDI 402
KLI+G + + + + +L +K E+ C D++ I +G L+ A ++
Sbjct: 15 KLISGLSQARRMDDAASVLTKLK-------EAGFCPDIVCYNILIGGFCNKNRLDKAREM 67
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS----------------CL 446
L+DME AG D+ TY +L++ + K+ + A ++KQM K CL
Sbjct: 68 LNDMEEAGLEPDTITYNTLISYFGKIGDIKVAHRMMKQMIKDGLQPTVVTYGSLIHAYCL 127
Query: 447 VQNLSCEMVVSERFSEVADKSAS-------FTDTSSLMDKSDLAESLIQEMREEAALSTI 499
N+ M + + A + A D+ + +LA SL+ +MR +
Sbjct: 128 NGNVDEAMKIFKAMDAAASRVAPNNVIYNILIDSLCENNDIELALSLMDDMRVKGVKPNT 187
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
N+ + K + AL++ RM E P T L
Sbjct: 188 GTYNAMFKGLRERKWLNQALELMDRMMEQPCNPDYITMEILT 229
>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Cucumis sativus]
Length = 637
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 99/230 (43%), Gaps = 22/230 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID + +E A +L++M+ G P Y SL+ + + K + A L ++++++C
Sbjct: 412 LIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENC 471
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ V+ + F + L D D L EM++ +Y N+
Sbjct: 472 GRSSARVYAVMIKHFG----------NCGRLSDAVD----LFCEMKKLGCSPDVYTYNAL 517
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
+ + MI +A + R M+E P +++ ++ G + + ++ +K E
Sbjct: 518 MSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMK---E 574
Query: 566 SGVL--AVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
S ++ AVS Y T+L + G FE +++ MK + D + Y S
Sbjct: 575 SEIMPDAVS---YNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSS 621
>gi|356506793|ref|XP_003522160.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Glycine max]
Length = 461
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 27/232 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +IDA + L+ A+ +L M AG P D ++ +L++ + +F ++ L +M K
Sbjct: 52 NTLIDAYCRFATLDVAYSVLARMHDAGIPPDVVSFNTLISGAVRKSLFSKSLDLFDEMLK 111
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQE--MREEAALSTIYK 501
+ + +S + F + K D A + +E +R+E +T
Sbjct: 112 ---------RGINPDAWSHNILMNCLFQ-----LGKPDEANRVFKEIVLRDEVHPAT--- 154
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
N I CK +G+AL ++R +Q P V T+ L+ G +D + +K
Sbjct: 155 YNIMINGLCKNGYVGNALSLFRNLQRHGFVPQVLTYNALINGLCKARRLKDARRV---LK 211
Query: 562 RNIESG--VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
E+G AV+ Y T++ + FE +E++ M+ D Y
Sbjct: 212 EFGETGNEPNAVT---YTTVMTCCFRCRLFEEGLEILSEMRSLGFTFDGFAY 260
>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
Length = 888
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 107/266 (40%), Gaps = 27/266 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDM 406
LIN Y K GK + L++ KE S G + S +I+ I L A I +DM
Sbjct: 434 LINLYVKIGKVPKA----LAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDM 489
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER-FSEVAD 465
+G D Y L+ A+ K+ A + ++M+K M S R F + +
Sbjct: 490 IKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKE--------RMQPSNRTFRPIIE 541
Query: 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
A D +D DL MR T+ N+ I+ + + A+ + +M
Sbjct: 542 GFAVAGDMKRALDTLDL-------MRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKM 594
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ 585
I P T+ ++ G+++ DI + + ESG L + +YETLL +
Sbjct: 595 SIAGIAPNEHTYTIIMRGYAA---SGDIGKAFEYFTKIKESG-LKLDVYIYETLLRACCK 650
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMY 611
G + + V M Q + + +Y
Sbjct: 651 SGRMQSALAVTREMSFQKIPRNTFIY 676
>gi|15225055|ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
gi|75100007|sp|O80958.1|PP194_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g39230, mitochondrial; AltName: Full=Protein LATERAL
ORGAN JUNCTION; Flags: Precursor
gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis thaliana]
gi|330254554|gb|AEC09648.1| lateral organ junction protein [Arabidopsis thaliana]
Length = 867
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 120/274 (43%), Gaps = 24/274 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+ING K G+ S+ +L ++ KE T + +ID +++G ++A + +M
Sbjct: 560 IINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSEN 619
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + T+ SL+ + K A + +M+ L +L + + F + D +
Sbjct: 620 GKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTA 679
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
+T L E+ E + + NS I F + A+ +Y++M
Sbjct: 680 YT--------------LFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDG 725
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITI-LWGDIKRN-IESGVLAVSRDLYETLLLNFL-QG 586
I + T+ ++ G + +D I L D+ ++ G+ V ++ +L+N L +
Sbjct: 726 ISCDLFTYTTMIDG-----LLKDGNINLASDLYSELLDLGI--VPDEILHMVLVNGLSKK 778
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
G F + +++ MKK+++ + L+Y + HH+
Sbjct: 779 GQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHHR 812
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 97/250 (38%), Gaps = 24/250 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ VI A ++ G +E A ++D+M G PM SL+ Y K +A L +M +
Sbjct: 314 TSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEE 373
Query: 444 SCLVQNLSCEMVVSERFSEVAD--KSASF---TDTSSLMDKSDLAESLIQ----EMREEA 494
L + V+ E F + + K+ F + + S L ++IQ EA
Sbjct: 374 EGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEA 433
Query: 495 ALSTI-----------YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
AL + N FCK + A + M++ I P V + ++
Sbjct: 434 ALEIFNDSFESWIAHGFMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLA 493
Query: 544 HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
H + +++ + +E G L + Y L+ F + + +VI M N
Sbjct: 494 HCRM---KNMDLARSIFSEMLEKG-LEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASN 549
Query: 604 MYVDKLMYKS 613
++++Y +
Sbjct: 550 FEANEVIYNT 559
>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/227 (18%), Positives = 94/227 (41%), Gaps = 19/227 (8%)
Query: 386 VIDALIQLGFLEAAHDIL-DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
+I+ ++ + HD+L +DM + G D TY S+++ Y K+ + A L +M S
Sbjct: 255 LINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSS 314
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
+ N V+ + F +V + + A + ++M L + S
Sbjct: 315 GIKPNDFTFNVLIDGFGKVGNMRS--------------AMVMYEKMLLLGCLPDVVTFTS 360
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
I +C+ + LK++ M+ + P V T+ L+ R+ + R++
Sbjct: 361 LIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREAR----NFLRHL 416
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+S + +Y ++ F + G + ++ M+++ DK+ +
Sbjct: 417 KSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITF 463
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 21/200 (10%)
Query: 348 AKLINGYKKHG---KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
+I+GY K G SEL ++S + + F + L ID ++G + +A + +
Sbjct: 289 TSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVL----IDGFGKVGNMRSAMVMYE 344
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
M L G D T+ SL+ Y + + L ++M+ V+NLS +
Sbjct: 345 KMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMK----VRNLSPNVYTYAVLINAL 400
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
K + A + ++ ++ + + N I FCK + +A I
Sbjct: 401 CKENRIRE----------ARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAE 450
Query: 525 MQEMKIRPTVETFYYLVYGH 544
MQE K RP TF L+ G+
Sbjct: 451 MQEKKCRPDKITFTILIIGN 470
>gi|218192883|gb|EEC75310.1| hypothetical protein OsI_11678 [Oryza sativa Indica Group]
Length = 473
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
++I+G H SE + IK ++ T + ID L ++G ++ A I ++M
Sbjct: 260 RIIHGLFAHKMGSEALRVFNEIKLRGYNVDAVTY-TTAIDGLCKMGCIDEARQIWNEMVD 318
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVSERFSEVADKS 467
G + Y SL+ Y K F A + +M L ++ +SC ++V+ +
Sbjct: 319 KGMEPNEYAYCSLVAYYCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCTH----- 373
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ D A + +EM ++ + N I CK + +A+++Y ++
Sbjct: 374 ----------GRVDEALGMFEEMVKKGIEHDVITYNILIQGLCKAGRLSEAIQVYEQLLS 423
Query: 528 MKIRPTVETFYYLV 541
+ P+V TF L+
Sbjct: 424 SGLEPSVSTFTPLI 437
>gi|356540361|ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Glycine max]
Length = 523
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 20/223 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +I +G E AH++ M G P+D Y +LL A K EA+ + M
Sbjct: 220 SILISGWGDIGDSEKAHELFQAMLEQGCPVDLLAYNNLLQALCKGGCVDEAKTIFHDM-- 277
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+S+R A + F + D A ++ +MR L ++ N
Sbjct: 278 ------------LSKRVEPDAFTYSIFIHSYCDADDVQSALRVLDKMRRYNILPNVFTYN 325
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL-VYGHSSLEMYRDITILWGDIKR 562
I CK + + +A + M +RP ++ + Y E+ R I +++
Sbjct: 326 CIIKRLCKNEHVEEAYLLLDEMISRGVRPDTWSYNAIQAYHCDHCEVNRAIRLMF----- 380
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMY 605
+E R Y +L ++ G F++V +V G M + Y
Sbjct: 381 RMEKDNCLPDRHTYNMVLKLLIRIGRFDKVTKVWGNMGDKKFY 423
>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
Length = 883
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 105/258 (40%), Gaps = 23/258 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID L +LG LE A+ IL M G +D T+ +L+ + K+ ++ L + M
Sbjct: 479 TALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENM-- 536
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
V R A F D K + A +++ +M + + ++
Sbjct: 537 ------------VENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHT 584
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKR 562
I C+ +LK+ RM++ P V T+ ++ G + + TIL+
Sbjct: 585 ILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILF----- 639
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK---SEFLKHH 619
++ S ++ + Y L+ ++ G +R +++ M K + +Y S F+ +
Sbjct: 640 SMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSN 699
Query: 620 KHLYRRLKVSNARTEAQS 637
+ R S +A+S
Sbjct: 700 TAIGARALSSTGDLDARS 717
>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 713
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 15/195 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+GY K G+ E+ L+ +++ T + +I+ + G +E A+ M+
Sbjct: 229 LIDGYGKCGELDEVEQLVEEMRRSGCKADVVTY-NALINCFCKFGRMETAYGYFAAMKRE 287
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + T+ + + A+ K + REA L QMR + N F+
Sbjct: 288 GVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALN---------EFTYTC----- 333
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D + + D A L+ EM + + + CK + + +A + R M++
Sbjct: 334 LIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAG 393
Query: 530 IRPTVETFYYLVYGH 544
+R + L++GH
Sbjct: 394 VRANELLYTTLIHGH 408
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 98/233 (42%), Gaps = 18/233 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VID L + G L A + M+ G D T+ SL+ Y K E E L+++MR+S
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRS- 252
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
C+ ++V +A + + + A M+ E ++ + ++
Sbjct: 253 -----GCK-------ADVVTYNA-LINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTF 299
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
+ FCK ++ +A+K++ +M+ + T+ L+ G D +L ++ R
Sbjct: 300 VDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQ-- 357
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKH 618
GV ++ Y L+ + +V+ M+K + ++L+Y + H
Sbjct: 358 -GV-PLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGH 408
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 481 DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
D + L++ + E+ ++ N I F CK + +A ++ RM+EM P V TF L
Sbjct: 170 DRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSL 229
Query: 541 VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
+ G+ ++ L +++R SG A Y L+ F + G E MK
Sbjct: 230 IDGYGKCGELDEVEQLVEEMRR---SGCKA-DVVTYNALINCFCKFGRMETAYGYFAAMK 285
Query: 601 KQNMYVDKLMYKS 613
++ + + + + +
Sbjct: 286 REGVMANVVTFST 298
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 59/289 (20%), Positives = 122/289 (42%), Gaps = 30/289 (10%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ ++ + K G E L ++ + E T + +ID + G L+ A +LD+M
Sbjct: 297 STFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTY-TCLIDGTCKAGRLDDAIVLLDEMV 355
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVSERF------ 460
G P++ TY L+ K + EAE +L+ M K+ + N L ++ F
Sbjct: 356 RQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSE 415
Query: 461 ------SEVADKS--------ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506
SE+ +K + + K D A+SL+ +M +E+ L Y + +++
Sbjct: 416 KALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKM-DESGLEPNYIIYTTM 474
Query: 507 YFFC-KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NI 564
C K + +A+ + +++ + +P V T+ L+ G + + ++ +
Sbjct: 475 MDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGL 534
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ V A Y L+ + G +++ M + M +DK++Y +
Sbjct: 535 DPNVQA-----YTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTA 578
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 42/215 (19%), Positives = 90/215 (41%), Gaps = 18/215 (8%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
E A +L +M+ G +D + Y +L+ V EA++LL +M +S L N ++
Sbjct: 415 EKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPN----YII 470
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ KS + A +++Q++ + + + I CK I
Sbjct: 471 YTTMMDACFKSGKVPE----------AIAMLQKILDSGFQPNVITYCALIDGLCKAGSID 520
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLY 576
+A+ + +M+++ + P V+ + LV G + L+ ++ + G +++ + +Y
Sbjct: 521 EAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEM---VHKG-MSLDKVVY 576
Query: 577 ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
LL +L+ G + M + +D Y
Sbjct: 577 TALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCY 611
>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 477
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 17/195 (8%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSF-GESTLCSDVIDALIQLGFLEAAHDILDDM 406
LING K G+ ++ LL K E HS + + + +I L + + A D+ +M
Sbjct: 202 GTLINGLCKAGETKAVARLLR--KLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEM 259
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
+ G + TY +L+ + + +EA +LL +M+ ++N++ ++ + K
Sbjct: 260 IVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMK----LKNINPDVYTFNILIDALGK 315
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
K D A SL +EM+ + I S I CK + A+ + ++M+
Sbjct: 316 EG----------KIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMK 365
Query: 527 EMKIRPTVETFYYLV 541
E I+P V ++ L+
Sbjct: 366 EQGIQPDVYSYTILL 380
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 8/152 (5%)
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
L++++ + + + I+ CK K +GDA +Y M I P V T+ L+YG
Sbjct: 220 LLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFC 279
Query: 546 SLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
+ ++ L ++K +NI V + L+ + G + + + MK +NM
Sbjct: 280 IMGNLKEAFSLLNEMKLKNINPDVYT-----FNILIDALGKEGKIDEAISLFEEMKHKNM 334
Query: 605 YVDKLMYKS--EFLKHHKHLYRRLKVSNARTE 634
+ + + Y S + L + HL R + + E
Sbjct: 335 FPNIVTYTSLIDGLCKNHHLERAIALCKKMKE 366
>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 689
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 111/273 (40%), Gaps = 37/273 (13%)
Query: 350 LINGYKKHGKNSELS--WLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
LI G ++GK E + W L+ K ++T I L G++ A ++ ++E
Sbjct: 365 LIKGLLENGKIDEATMIWRLMPAKGYA---ADNTTYGIFIHGLCVNGYVNKALGVMQEVE 421
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS-CEMVVSERFSEVADK 466
G +D Y S++ K + EA L+K+M K + N C ++ +
Sbjct: 422 SKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLI-----R 476
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+ +D S LM + M + L T+ N I C+ G+A + M
Sbjct: 477 DSRLSDASLLM----------RGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEML 526
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITI-----LWGD-IKRNIESGVLAVSRDLYETLL 580
E ++P ++T+ L+ G + RD I LW ++ +E V+ ++ L+
Sbjct: 527 ENGLKPDLKTYSILLGG-----LCRDRKIELALELWHQFLQSGLEPDVM-----MHNILI 576
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G + M V+ M+ +N + + Y +
Sbjct: 577 HGLCSVGKLDDAMTVMANMEHRNCTANLVTYNT 609
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 102/254 (40%), Gaps = 31/254 (12%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL-KQMR 442
S VI+ L + G L+ A ++ D+M D T Y L+ + K K + A L K +
Sbjct: 188 STVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLE 247
Query: 443 KSCLVQNLSCEMVVSERFSEVA---------------DKSASFTDTSSLM------DKSD 481
S + N+ ++ S+ ++ SSL+ D
Sbjct: 248 DSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREKDLYTYSSLIHGLCDEGNVD 307
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
AES+ E+ E A + N+ + FC+ I ++L+++R M++ R +V Y +
Sbjct: 308 KAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIMEQ---RNSVNIVSYNI 364
Query: 542 YGHSSLEMYR--DITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
LE + + T++W R + + A Y + GY + + V+ +
Sbjct: 365 LIKGLLENGKIDEATMIW----RLMPAKGYAADNTTYGIFIHGLCVNGYVNKALGVMQEV 420
Query: 600 KKQNMYVDKLMYKS 613
+ + ++D Y S
Sbjct: 421 ESKGGHLDVYAYAS 434
>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
Length = 820
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/236 (18%), Positives = 96/236 (40%), Gaps = 25/236 (10%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK------SCLVQN 449
L+ A D+ D M L G D+ +Y +L+ + + EA L +++ + + LV+
Sbjct: 180 LDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQPDMYTHAALVKG 239
Query: 450 LSCEMVVSER------------FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
L C+ E + A+ D K++ AE ++ EM + +
Sbjct: 240 L-CDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVP 298
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL-EMYRDITIL 556
+ + +C+ + A++++ M+ P V T+ +V G ++ ++Y+ + +L
Sbjct: 299 CAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALL 358
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
+ +E V+ Y L+ G+ E ++ M+ + D+ Y
Sbjct: 359 DQMRECGVEPDVVT-----YNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYN 409
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 80/225 (35%), Gaps = 28/225 (12%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G +E+A +L ME G D TY L+ A K EA C
Sbjct: 384 GHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEA-----------------CS 426
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKS---DLAESLIQEMREEAALSTIYKLNSSIYFFC 510
+ + + S +F + + K D+A + +++M Y + I C
Sbjct: 427 LFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLC 486
Query: 511 KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLA 570
K K + L M + ++P+ + ++ Y T +WG + L
Sbjct: 487 KTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVS------LG 540
Query: 571 VSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
S D+ Y T + + G V+ MKK + VD + Y +
Sbjct: 541 CSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNT 585
>gi|147789723|emb|CAN67400.1| hypothetical protein VITISV_025966 [Vitis vinifera]
Length = 550
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 95/233 (40%), Gaps = 28/233 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK-QMRKS 444
++ L + G L+ A ++LD+M L+G P D+ TY ++L + F +A K Q+RK
Sbjct: 206 LVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKG 265
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
C ++ +++ E+ K A ++++M E I NS
Sbjct: 266 CPAYLITYTVLI-----ELVCKHCGTVQ----------AMEVLEDMAIEGCYPDIVTYNS 310
Query: 505 SIYFFCK-GKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEMYRDITILWGDI 560
+ + CK GK AL IY + + P T+ L++ H + +I ++
Sbjct: 311 LVNYTCKQGKYEDTALIIYNLLSH-GMGPNTVTYNTLLHSLCTHGYWDEVDEILLIM--- 366
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
N+ S V Y L+ + G +R + M N D + Y +
Sbjct: 367 --NMTSQPPTVVT--YNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNT 415
>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
Length = 420
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 18/197 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I L Q G E + LD+M ++G ++ TY +L+ + F EA LL +M
Sbjct: 237 TQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVA 296
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ CE+ V S D M + D A + M E+ ++
Sbjct: 297 ------IGCELDVV--------IYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYT 342
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
S I C ++ +AL + + M+ I P T+ L+ G + + L ++K N
Sbjct: 343 SLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSN 402
Query: 564 IESGVLAVSRDLYETLL 580
G++ D+Y+ L
Sbjct: 403 ---GLMPAG-DIYKILF 415
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 104/266 (39%), Gaps = 37/266 (13%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I G ++AA DILD+ME G ++ TY +L+ A +LK+M+
Sbjct: 165 TTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMK- 223
Query: 444 SCLVQNLSCEMVVS--------------ERFSEVADK---SASFTDTSS-------LMDK 479
L N C VV+ E E D+ S F + ++ L K
Sbjct: 224 --LRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQK 281
Query: 480 SDLAES--LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
E+ L+ EM + NS I CK + A ++ M E + P V T+
Sbjct: 282 GSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTY 341
Query: 538 YYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIG 597
L+ G + + L +++ G++ S Y TL+ F Q + ++++
Sbjct: 342 TSLIQGLCDAGLLDEALGLMQEMR---AKGIVPNSVT-YTTLINGFTQADRTDHALQLVN 397
Query: 598 YMKKQNMYVDKLMYKSEFLKHHKHLY 623
MK + +YK F K LY
Sbjct: 398 EMKSNGLMPAGDIYKILF----KSLY 419
>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
Length = 676
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 30/245 (12%)
Query: 394 GFLEAAHDILDDMELA--GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM--RKSCLVQN 449
G A + D M A G D ++++L+ + F EA+ALL M + CL +
Sbjct: 158 GCFAHAREAFDGMARAAGGVRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCL-DS 216
Query: 450 LSCEMVVSE-----RFSEVAD---KSASFTDTSSLMDKSDLAESL------------IQE 489
+C +VV RF V D + + ++++ S + L ++E
Sbjct: 217 ATCTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEE 276
Query: 490 MREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM-QEMKIRPTVETFYYLVYGHSSLE 548
M + +Y S I CK + A +++ ++ + +P V T+ ++ G+
Sbjct: 277 MVGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEG 336
Query: 549 MYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDK 608
+L G R +E G LA + + Y TL+ +GG F+R E++ MK + +
Sbjct: 337 KLARAEMLLG---RMVEQG-LAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNI 392
Query: 609 LMYKS 613
Y +
Sbjct: 393 YTYNA 397
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 15/162 (9%)
Query: 384 SDVIDALIQLGFLEAAHDI-LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
+ +ID L ++G++E A + L ++ + + + TY ++ Y K AE LL +M
Sbjct: 290 TSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMV 349
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
+ L N + + K SF D A L+ +M+ E L IY
Sbjct: 350 EQGLAPNTNTYTTLIHGHC----KGGSF----------DRAFELMNKMKLEGFLPNIYTY 395
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
N+ I FCK I +A K+ R + T+ L+ H
Sbjct: 396 NAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEH 437
>gi|224139118|ref|XP_002326772.1| predicted protein [Populus trichocarpa]
gi|222834094|gb|EEE72571.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 24/224 (10%)
Query: 397 EAAHDILDDME---LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
E D + ME G + LL A+ V+ +EA+++ +M + N+
Sbjct: 163 EETLDAFEKMEKRVFVGRKFGVEEFNVLLRAFCTVRKLKEAKSVFVKMHER-FPPNVKTM 221
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
++ F E D +A E EM + + I +CK
Sbjct: 222 NILLLGFKESRDVTA--------------MELFYHEMVKRGFKPSSSSYGIRIDAYCKKG 267
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI-KRNIESGVLAVS 572
DAL+I+ M+ PT+ET L++G L+ +I KRN+++ A
Sbjct: 268 YFADALRIFEEMERANCLPTLETVTTLIHGAGVARNAMKARELFDEIPKRNLQADTGA-- 325
Query: 573 RDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFL 616
Y L+ + ++ + ++++ M+K N++ D + Y + FL
Sbjct: 326 ---YNALISSLVKCREVKSAIQLMDEMEKNNIHYDDMTYHTMFL 366
>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 119/299 (39%), Gaps = 42/299 (14%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID I+ G LEA + D M G ++ TY LL+ + E ALL +M
Sbjct: 56 MIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQK 115
Query: 446 LVQNLSCEMVVSERFSEVADKSA-------------SFTD-TSSLM-------DKSDLAE 484
+V + ++ + S D A + D T S++ K +AE
Sbjct: 116 MVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAE 175
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
++Q + + T N+ I +C+ + A + +M+ I+P T+ L+ G
Sbjct: 176 EVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGL 235
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
E + L +++ N GV + + + TL+ + + G E+ V+ M++ +
Sbjct: 236 CKAERITNAQDLLMEMQDN---GV-NPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 291
Query: 605 YVDKLMYKS---EFLKH--------------HKHLYRRLKVSNARTEAQSKRLVNVQAF 646
+ + Y S F K+ HK + +V NA +A + N QAF
Sbjct: 292 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAF 350
>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 915
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 22/220 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
+++ +LG + A + + AG +D+ TY SL+ Y + K A A+ M K
Sbjct: 210 MVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKG 269
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
CL +S ++ F E + D A L +M E+ T+
Sbjct: 270 CLRNEVSYTNLI-HGFCEAR--------------RVDEALKLFSQMHEDNCWPTVRTYTV 314
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKRN 563
I+ C+ +AL +++ M E +P V T+ L+ + D IL G +++
Sbjct: 315 IIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKG 374
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
+ V+ Y L+ + + G +E++ M+ N
Sbjct: 375 LIPSVVT-----YNALIDGYCKKGLSASALEILSLMESNN 409
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 92/238 (38%), Gaps = 22/238 (9%)
Query: 332 LVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALI 391
L L L+ + I+ K G E L S+K++ E + S +ID
Sbjct: 472 LSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANE-VIYSTLIDGYC 530
Query: 392 QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
++G + +LD M AG +S TY SL+ Y K K F+EA L+
Sbjct: 531 KVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLV------------- 577
Query: 452 CEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK 511
++++ AD D D+ D A + +M + ++ + I+ +C
Sbjct: 578 -DIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCS 636
Query: 512 GKMIGDALKIYRRMQEMKIRP--TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESG 567
+ DA + +M I P + T + YG + I +G +KR E G
Sbjct: 637 HGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGR-----FGSIDGAFGILKRMHEVG 689
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 14/159 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I AL QLG A ++ +M + TY L+ + + F +A+ +L M +
Sbjct: 315 IIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKG 374
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L+ ++ + + + + SAS + SLM+ ++ + + + Y N
Sbjct: 375 LIPSVVTYNALIDGYCKKG-LSASALEILSLMESNNCSPN-----------ARTY--NEL 420
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
I FC+GK I A+ + +M E K++P V T+ L++G
Sbjct: 421 ILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQ 459
>gi|255661044|gb|ACU25691.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 429
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 94/216 (43%), Gaps = 23/216 (10%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQL----GFL 396
S+ M L N + + +NS W S+ + + GE + D+++ + + G L
Sbjct: 224 SSPYMDMLANKFTSYSQNS---WKPFSLARGVRVTAKGEGSFDLDMVNTYLSIFLAKGKL 280
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + + G S TY S+++++ K F EA ++L ++ +++ V+
Sbjct: 281 SVACKLFEIFTNMGVDPASYTYNSIMSSFVKRGYFNEAWSVLHAFGETVYPADIATYNVI 340
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ + M ++DLA ++++++ +E I N+ I K I
Sbjct: 341 IQGLGK--------------MGRADLANAVLEKLMKEGGYLDIVMYNTLINALGKAGRID 386
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
+A K++ +M+ I P V T+ L+ HS +D
Sbjct: 387 EANKLFEQMKASGINPDVVTYNTLIEVHSKAGRLKD 422
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + L +K++ ++F + S VI L + G LE A ++++ME
Sbjct: 65 LIDGLFKNGREEAAYTMFLDLKRKGNNFVDGISYSIVILHLCREGQLEEALQLVEEMEGR 124
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
G +D T SLL Y+ + A L+K +R LV +L
Sbjct: 125 GFVVDLVTVTSLLITLYRRGQWDWAGKLMKHIRDGNLVPDL 165
>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/227 (18%), Positives = 94/227 (41%), Gaps = 19/227 (8%)
Query: 386 VIDALIQLGFLEAAHDIL-DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
+I+ ++ + HD+L +DM + G D TY S+++ Y K+ + A L +M S
Sbjct: 255 LINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSS 314
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
+ N V+ + F +V + + A + ++M L + S
Sbjct: 315 GIKPNDFTFNVLIDGFGKVGNMRS--------------AMVMYEKMLLLGCLPDVVTFTS 360
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
I +C+ + LK++ M+ + P V T+ L+ R+ + R++
Sbjct: 361 LIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREAR----NFLRHL 416
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+S + +Y ++ F + G + ++ M+++ DK+ +
Sbjct: 417 KSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITF 463
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 21/200 (10%)
Query: 348 AKLINGYKKHG---KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
+I+GY K G SEL ++S + + F + L ID ++G + +A + +
Sbjct: 289 TSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVL----IDGFGKVGNMRSAMVMYE 344
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
M L G D T+ SL+ Y + + L ++M+ V+NLS +
Sbjct: 345 KMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMK----VRNLSPNVYTYAVLINAL 400
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
K + A + ++ ++ + + N I FCK + +A I
Sbjct: 401 CKENRIRE----------ARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAE 450
Query: 525 MQEMKIRPTVETFYYLVYGH 544
MQE K RP TF L+ G+
Sbjct: 451 MQEKKCRPDKITFTILIIGN 470
>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
Length = 2052
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+E A + ++M GH S TY ++ A +VKM +A+ +L M ++ +L +
Sbjct: 1822 VERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNM 1881
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+ RF++ + +MDK A L EM + + NS + FCK +
Sbjct: 1882 LINRFAK-----------AGMMDK---AMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKV 1927
Query: 516 GDALKIYRRMQEMKIRPTVETF 537
+A K++ M+ I P T+
Sbjct: 1928 EEANKLFAEMKARGIFPNGRTY 1949
Score = 42.7 bits (99), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
VIDAL+++ E A +LD M G D TY L+ + K M +A L +M +
Sbjct: 1847 VIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRG 1906
Query: 445 CLVQNLSCEMVV------------SERFSEVADKS--------ASFTDTSSLMDKSDLAE 484
C+ ++ +V ++ F+E+ + S TD + A
Sbjct: 1907 CIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAH 1966
Query: 485 SLIQEMREEAALSTI--YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
+ + EMR+E + I L S+I KGK+ ++ R M E +P + TF
Sbjct: 1967 AYLVEMRKEGLVDAISYVALISTICKLGKGKL---GFQLLREMLEKGFKPNLVTF 2018
>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
Length = 619
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 15/195 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+GY K G+ E+ L+ +++ T + +I+ + G +E A+ M+
Sbjct: 229 LIDGYGKCGELDEVEQLVEEMRRSGCKADVVTY-NALINCFCKFGRMETAYGYFAAMKRE 287
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + T+ + + A+ K + REA L QMR + N F+
Sbjct: 288 GVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALN---------EFTYTC----- 333
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D + + D A L+ EM + + + CK + + +A + R M++
Sbjct: 334 LIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAG 393
Query: 530 IRPTVETFYYLVYGH 544
+R + L++GH
Sbjct: 394 VRANELLYTTLIHGH 408
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 98/233 (42%), Gaps = 18/233 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VID L + G L A + M+ G D T+ SL+ Y K E E L+++MR+S
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRS- 252
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
C+ ++V +A + + + A M+ E ++ + ++
Sbjct: 253 -----GCK-------ADVVTYNA-LINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTF 299
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
+ FCK ++ +A+K++ +M+ + T+ L+ G D +L ++ R
Sbjct: 300 VDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQ-- 357
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKH 618
GV ++ Y L+ + +V+ M+K + ++L+Y + H
Sbjct: 358 -GV-PLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGH 408
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 481 DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
D + L++ + E+ ++ N I F CK + +A ++ RM+EM P V TF L
Sbjct: 170 DRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSL 229
Query: 541 VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
+ G+ ++ L +++R SG A Y L+ F + G E MK
Sbjct: 230 IDGYGKCGELDEVEQLVEEMRR---SGCKA-DVVTYNALINCFCKFGRMETAYGYFAAMK 285
Query: 601 KQNMYVDKLMYKS 613
++ + + + + +
Sbjct: 286 REGVMANVVTFST 298
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 17/231 (7%)
Query: 319 EKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG 378
E + +L+M K + R +LL++ LI+G+ + KNSE + LLS K
Sbjct: 381 EAEDVLRMMEKAGV---RANELLYTT-----LIHGHFMN-KNSEKALGLLSEMKNKGLEL 431
Query: 379 ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438
+ +L +I L + L+ A +L M+ +G + Y +++ A +K EA A+L
Sbjct: 432 DISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAML 491
Query: 439 KQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT--SSLMD----KSDL--AESLIQEM 490
+++ S N C + F+E+ K S ++L+D + +L A +L +M
Sbjct: 492 QKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKM 551
Query: 491 REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+ ++ I FC M+ +A +++ M I P + L+
Sbjct: 552 IDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLI 602
>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
Length = 897
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 93/463 (20%), Positives = 181/463 (39%), Gaps = 77/463 (16%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
+ P T F + A R G + + ++ M++ G V DA ++ IH + C + +
Sbjct: 155 VPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDA--VLYQTVIHAL-CDQGGVT 211
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLP-NPKLRQD 291
+ ++++ L+ + D + + R RE ++
Sbjct: 212 EAATLLNEML-------------LMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTK 258
Query: 292 AQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQE---LVLFRNGKLLHSNRAMA 348
P +++ G LQ + + + D M G+ +VLF
Sbjct: 259 GCMPGVMTYG-------FLLQGLCRVRQADEARAMLGRVPELNVVLFNT----------- 300
Query: 349 KLINGYKKHGKNSELSWL-----LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
+I G GK +E + L L + + H++ S ++ L +LG + +A +L
Sbjct: 301 -VIGGCLAEGKLAEATELYETMGLKGCQPDAHTY------SILMHGLCKLGRIGSAVRLL 353
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
+ME G + TY +L ++ K M+ + ALL++M L N S+ ++ +
Sbjct: 354 REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLN-------SQGYNGM 406
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
A D + D A LIQEMR + I N+ IY C + + +A ++
Sbjct: 407 I--YALCKD-----GRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE 459
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVL-AVSRDL--YETLL 580
+ E + T+ +++ + RD W D R + +L S D+ Y L+
Sbjct: 460 NLLEEGVVANGITYNTIIHA-----LLRDGR--WQDAVRLAKEMILHGCSLDVVSYNGLI 512
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK---SEFLKHHK 620
+ G +R + ++ M ++ + + + Y SE K +
Sbjct: 513 KAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERR 555
>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
Length = 667
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 100/237 (42%), Gaps = 25/237 (10%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK------SCLVQN 449
++ A D+ D M L G D +Y +L+ + EA L +M + + LV+
Sbjct: 26 VDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQPDMHMYAALVKG 85
Query: 450 LSCE-------MVVSERFSEVADKS-----ASFTDTSSLMDKSDLAESLIQEMREEAALS 497
L C +++ R E+ + A+ D K+ AE ++QEM E+
Sbjct: 86 L-CNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAP 144
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH-SSLEMYRDITIL 556
+ + I +CK + DAL++ M+ +P V T+ LV G + ++++ +T+L
Sbjct: 145 CVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLL 204
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ R AV+ Y L+ G+ E ++ M+ + D+ Y +
Sbjct: 205 --NKMRACGVNPDAVT---YNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNA 256
>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
Length = 831
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 68/385 (17%), Positives = 153/385 (39%), Gaps = 48/385 (12%)
Query: 162 LSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQI 221
+S + NG +KPDT++FN +++A G+ + I E M ++G A + L +
Sbjct: 377 ISKVEKNG---LKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKG 433
Query: 222 HEMNCQRDELKKFKCYI--DQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRY 279
+ + +E + + D++ P ++ + I+ A ++ M Y
Sbjct: 434 YGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQR----KIEEAWNIVYKMQSY 489
Query: 280 REPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGK 339
P+ K Y IGS C + I+P +L + K
Sbjct: 490 GVK-PDVVTFNTLAKAY-ARIGS---TCTAEDMIIPRML------------------HNK 526
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
+ + R ++NGY + GK E +K E + + +I + + ++
Sbjct: 527 VKPNVRTCGTIVNGYCEEGKMEEALRFFYRMK-ELGVHPNLFVFNSLIKGFLNINDMDGV 585
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
+++D ME G D T+ +L+ A+ V + E + M + + ++ ++++
Sbjct: 586 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 645
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
++ + + A+ ++ +MR+ + I +C + A+
Sbjct: 646 YARAGE--------------PEKAKQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAM 691
Query: 520 KIYRRMQEM-KIRPTVETFYYLVYG 543
++Y++M + + P + T+ L++G
Sbjct: 692 QVYKKMCGIVGLSPNLTTYETLIWG 716
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 28/196 (14%)
Query: 380 STLCSDV------IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE 433
T C DV ++ LI+ G + AH I + + GH TY +L+TA + K F
Sbjct: 313 GTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHS 372
Query: 434 AEALLKQMRKSCL----------------VQNLSCEMVVSERFSEVADKSASFTDTSSL- 476
+L+ ++ K+ L NL M + E+ E K + T + +
Sbjct: 373 LLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIK 432
Query: 477 ----MDKSDLAESLIQEM-REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR 531
+ K + + L+ M R+E N + +C + I +A I +MQ ++
Sbjct: 433 GYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVK 492
Query: 532 PTVETFYYLVYGHSSL 547
P V TF L ++ +
Sbjct: 493 PDVVTFNTLAKAYARI 508
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 111/271 (40%), Gaps = 35/271 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI GY K GK E S LL + ++ C+ ++ A +E A +I+ M+
Sbjct: 430 LIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSY 489
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAE-ALLKQMRKSCLVQNL-SCEMVVSERFSEVADKS 467
G D T+ +L AY ++ AE ++ +M + + N+ +C +V+ E
Sbjct: 490 GVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEE----- 544
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
K + A M+E ++ NS I F + ++ M+E
Sbjct: 545 ----------GKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEE 594
Query: 528 MKIRPTVETFYYLVYGHSSL-------EMYRDITILWGDIKRNIESGVLAVSRDLYETLL 580
++P V TF L+ SS+ E+Y D +L G I +I + + L
Sbjct: 595 FGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTD--MLEGGIDPDIHA---------FSILA 643
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ + G E+ +++ M+K + + ++Y
Sbjct: 644 KGYARAGEPEKAKQILNQMRKFGVRPNVVIY 674
>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
Length = 950
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 32/232 (13%)
Query: 339 KLLH--SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL 396
KL H + R +I+GY K G + S + + + + +I+ L++ +
Sbjct: 580 KLRHRPTTRTFMPIIHGYAKSG-DMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQM 638
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREA-------------------EAL 437
E A +ILD+M LAG + TY ++ Y V +A EAL
Sbjct: 639 EKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEAL 698
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD----KSDLAES--LIQEMR 491
LK KS +Q+ + V++ S SF + L+D + D+ E+ LIQ+M+
Sbjct: 699 LKACCKSGRMQSA---LAVTKEMSARNIPRNSFV-YNILIDGWARRGDVWEAADLIQQMK 754
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+E I+ S I K + A + M+ + ++P ++T+ L+ G
Sbjct: 755 KEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKG 806
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 39/219 (17%), Positives = 96/219 (43%), Gaps = 20/219 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S ++ + G EAA D+ + ++++ Y ++ A+ + AEAL+++M +
Sbjct: 381 SVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEE 440
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ ++ + + ++ VAD+ + + ++E T+
Sbjct: 441 EGIDAPIAIYHTMMDGYTMVADEKKGLV--------------VFKRLKECGFTPTVVTYG 486
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKR 562
I + K I AL++ R M+E ++ ++T+ ++ G L+ + + ++ D +K
Sbjct: 487 CLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKE 546
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
++ V+ LY ++ F G +R ++ + M+K
Sbjct: 547 GMKPDVI-----LYNNIISAFCGMGNMDRAIQTVKEMQK 580
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 68/149 (45%), Gaps = 24/149 (16%)
Query: 417 TYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSL 476
TY L+ Y KV +A + + M++ + NL ++ F ++ D + +F
Sbjct: 484 TYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAF------ 537
Query: 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
++ ++M +E + N+ I FC + A++ + MQ+++ RPT T
Sbjct: 538 --------AVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRT 589
Query: 537 FYYLVYGHSSLEMYRDITILWGDIKRNIE 565
F +++G++ GD++R++E
Sbjct: 590 FMPIIHGYAKS----------GDMRRSLE 608
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 27/200 (13%)
Query: 350 LINGYKKHGKNSELSWLLLSIKK---EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
L++G ++G E LL +++ + F TL + L + G ++ A + +D
Sbjct: 118 LLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTL----MAGLCKTGKIDMALKVFEDN 173
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
P D Y +L+ K EA L ++MR++ SCE V
Sbjct: 174 SNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMREN------SCEPDV---------- 217
Query: 467 SASFTDTSSLMDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
+FT + K D A+ +++ M + + +S I CK + DA ++++
Sbjct: 218 -VTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFK 276
Query: 524 RMQEMKIRPTVETFYYLVYG 543
RM I P V T+ L++G
Sbjct: 277 RMIVRGIEPNVVTYNSLIHG 296
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 101/252 (40%), Gaps = 27/252 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID L + G + A ++ M + G + TY SL+ + A L+++M
Sbjct: 256 SSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTA 315
Query: 444 S-CLVQNLSCEMVV-----SERFSEV----ADKSASFTDTSSL-----------MDKSDL 482
+ CL ++ ++ + R E D A F + + +++ D+
Sbjct: 316 TGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDM 375
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A +L +M ++A L + ++ + +C ++ DA ++ M P V T+ LV
Sbjct: 376 ARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVD 435
Query: 543 GHSSL-EMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
G + M +L KR + V+ Y L+ F + G +++ M
Sbjct: 436 GFCKVGRMVEARRVLKRMAKRGCQPNVVT-----YTALIDAFCRAGKPTVAYKLLEEMVG 490
Query: 602 QNMYVDKLMYKS 613
+ + + Y+S
Sbjct: 491 NGVQPNVITYRS 502
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 108/287 (37%), Gaps = 30/287 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LING+ K K ++LLL KE S VI + ++ A+ + M
Sbjct: 48 LINGFCKVHK-VHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVEN 106
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS----------------CLVQNLSCE 453
G + TY +LL+ + + EA LL +MR+ C +
Sbjct: 107 GCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMA 166
Query: 454 MVVSERFSEVADKSASFTDTSSLM------DKSDLAESLIQEMREEAALSTIYKLNSSIY 507
+ V E S D S+L+ + D A L ++MRE + + + +
Sbjct: 167 LKVFEDNSN-GDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMD 225
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIES 566
CKG + +A ++ M++ P V T+ L+ G RD ++ I R IE
Sbjct: 226 GLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEP 285
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
V+ Y +L+ F + + ++ M D + Y +
Sbjct: 286 NVVT-----YNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNT 327
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 14/158 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID L + L A M+ G + TY L+ + KV A LLK+M++S
Sbjct: 13 MIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESG 72
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L N+ V F K D A L ++M E + + N+
Sbjct: 73 LAPNVVTYSTVIHGFCR--------------QTKVDTAYKLFRQMVENGCMPNLVTYNTL 118
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ C+ ++ +A ++ M+E ++P ++ L+ G
Sbjct: 119 LSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAG 156
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 26/212 (12%)
Query: 356 KHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG-HPMD 414
K+G+++E + S+ K +T C+ ++ G L H +LD M G HP D
Sbjct: 313 KNGRSTEARKIFDSMTKRGLEPDIATYCT-LLQGYATKGALVEMHALLDLMVRNGIHP-D 370
Query: 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN---------------------LSCE 453
+ L+ AY K + EA + +MR+ L N L E
Sbjct: 371 HHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFE 430
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEA-ALSTIYKLNSSIYFFCKG 512
++ E + S + + DK D AE LI EM + L+TI+ NS I+ CK
Sbjct: 431 QMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIF-FNSIIHSHCKE 489
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ ++ K++ M + ++P V T+ L+ G+
Sbjct: 490 GRVIESEKLFDLMVRIGVKPNVITYSTLIDGY 521
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 127/303 (41%), Gaps = 32/303 (10%)
Query: 166 KSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMN 225
+S+G E PD + +N ++ + G S + + I + M++ G+ D + L Q +
Sbjct: 293 RSDGVE---PDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYA-- 347
Query: 226 CQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPN 285
+ L + +D + H + L+ + K + +D E +L ++ R+ N
Sbjct: 348 -TKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVD---EAMLVFSKMRQHGLN 403
Query: 286 PKL-RQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSIL------------KMEGKQEL 332
P + A L GS + Q++ E L + I+ K + +EL
Sbjct: 404 PNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEEL 463
Query: 333 VL--FRNGKLLHSNRAMAKLINGYKKHGK---NSELSWLLLSIKKEHHSFGESTLCSDVI 387
+L G L++ +I+ + K G+ + +L L++ I + + STL I
Sbjct: 464 ILEMLDRGICLNT-IFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTL----I 518
Query: 388 DALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLV 447
D G ++ A +L M G D TY +L+ Y +V +A AL K+M S +
Sbjct: 519 DGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVS 578
Query: 448 QNL 450
N+
Sbjct: 579 PNI 581
>gi|356574085|ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20740-like [Glycine max]
Length = 733
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 105/501 (20%), Positives = 195/501 (38%), Gaps = 76/501 (15%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIIL-------AQIHEMN 225
+KP ++N V+ A VR G + + + + G+V ++ + ++L +I EM
Sbjct: 231 VKPRVFLYNRVMDALVRTGHLDLALSVYDDLKEDGLVEESVTFMVLVKGLCKCGRIDEML 290
Query: 226 CQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPN 285
+++ C D + Y +L+ + ++DA + +M R R
Sbjct: 291 EVLGRMRERLCKPDVFA----------YTALVKILVPAGNLDACLRVWEEMKRDR----- 335
Query: 286 PKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNR 345
+ D + + +G L G ++Q EL + M+GK LV +R
Sbjct: 336 --VEPDVKAYATMIVG---LAKGGRVQEGYELFRE-----MKGKGCLV----------DR 375
Query: 346 AM-AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
+ L+ + GK EL++ LL + + +I+ L L ++ A+ +
Sbjct: 376 VIYGALVEAFVAEGK-VELAFDLLKDLVSSGYRADLGIYICLIEGLCNLNRVQKAYKLFQ 434
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK-------------SCLVQNLS 451
G D T K LL AY + E LL+QM+K S LV+
Sbjct: 435 LTVREGLEPDFLTVKPLLVAYAEANRMEEFCKLLEQMQKLGFPVIADLSKFFSVLVEKKG 494
Query: 452 CEMVVSERFSEVADKSAS-------FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
M + E F ++ +K F D+ + + A SL EM+ + + +
Sbjct: 495 PIMAL-ETFGQLKEKGHVSVEIYNIFMDSLHKIGEVKKALSLFDEMKGLSLKPDSFTYCT 553
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
+I I +A + R+ EM P+V + L G + + +L D N+
Sbjct: 554 AILCLVDLGEIKEACACHNRIIEMSCIPSVAAYSSLTKGLCQIGEIDEAMLLVRDCLGNV 613
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKH--- 621
G L Y +++ + E+V++V+ M +Q +D ++Y S KH
Sbjct: 614 SDGPLEFK---YSLTIIHACKSNVAEKVIDVLNEMIEQGCSLDNVIYCSIISGMCKHGTI 670
Query: 622 -----LYRRLKVSNARTEAQS 637
++ L+ N TE+ +
Sbjct: 671 EEARKVFSNLRERNFLTESNT 691
>gi|410110139|gb|AFV61149.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
salviifolia]
Length = 378
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE 458
A I ++ +G D Y +++ + K K+FREA +L+ +M+ + ++ N + +
Sbjct: 7 AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLS 66
Query: 459 RFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDA 518
+ E + F + A S+ EMRE L + N I + + M +A
Sbjct: 67 MYVE----NKKFLE----------ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEA 112
Query: 519 LKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYE 577
K++ M++M I P V ++ L+ + E++ + L+ ++R NIE V+ Y
Sbjct: 113 DKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YN 167
Query: 578 TLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++++ + + E+ +I M+ + + + + Y +
Sbjct: 168 SMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYST 203
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 29/169 (17%)
Query: 298 ISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKH 357
ISI S R G P+L+ ++++ + GK +L FR + L S A ++
Sbjct: 8 ISIFSRLKRSGFT----PDLVAYNAMINVFGKAKL--FREARSLISEMKTAGVM------ 55
Query: 358 GKNSELSWLLLSIKKEHHSFGES----------------TLCSDVIDALIQLGFLEAAHD 401
N+ LLS+ E+ F E+ T C+ +ID QLG + A
Sbjct: 56 -PNTTSYSTLLSMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 114
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
+ M G + +Y +LL Y ++F EA L + M++ + QN+
Sbjct: 115 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 163
>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
mitochondrial [Vitis vinifera]
Length = 876
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 105/258 (40%), Gaps = 23/258 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID L +LG LE A+ IL M G +D T+ +L+ + K+ ++ L + M
Sbjct: 456 TALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENM-- 513
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
V R A F D K + A +++ +M + + ++
Sbjct: 514 ------------VENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHT 561
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKR 562
I C+ +LK+ RM++ P V T+ ++ G + + TIL+
Sbjct: 562 ILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILF----- 616
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK---SEFLKHH 619
++ S ++ + Y L+ ++ G +R +++ M K + +Y S F+ +
Sbjct: 617 SMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSN 676
Query: 620 KHLYRRLKVSNARTEAQS 637
+ R S +A+S
Sbjct: 677 TAIGARALSSTGDLDARS 694
>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 711
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 20/229 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI + G + A ++ +M G D T+ S++ A K + AE LL+QM +
Sbjct: 122 VIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNG 181
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ N S S + + + A + +EM + I NS
Sbjct: 182 VPPN--------------KVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSF 227
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
+ CK +A +I+ M RP + T+ L++G+++ + D+ + +K
Sbjct: 228 MDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMK---- 283
Query: 566 SGVLAVSRDLYETLLLN-FLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G V+ L T+L++ + + G + M ++ M+ Q + D Y +
Sbjct: 284 -GDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYST 331
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 29/219 (13%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHS---FGESTLCSDVIDALIQLGFLEAAHDILDDM 406
LI+ Y K G E +L ++ + S F STL I AL ++G L A D + M
Sbjct: 297 LIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTL----ISALCRMGRLADAVDKFNQM 352
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS-----------CLVQNLSCEMV 455
G ++ Y SL+ + +A+ L+ +M + +V ++ E
Sbjct: 353 IGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGR 412
Query: 456 VSER------FSEVADKS-----ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
V + ++ ++S + D L+ + A S++ M + N+
Sbjct: 413 VMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNT 472
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ + K I D L ++R M + KI+PT T+ ++ G
Sbjct: 473 LVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDG 511
>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 529
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 10/220 (4%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +IDA + G ++ A ++ M + TY SL+ ++ V + ++A+++ M K
Sbjct: 226 SILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIK 285
Query: 444 SC-LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
NL EM + + ++ + S D ++ A I EM I+
Sbjct: 286 MVDEAMNLFEEMHFKQIYPDMVIYN-SLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTY 344
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
NS + CK + A+++ ++++ I+P+V T+ L+ G +D ++ D+
Sbjct: 345 NSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLL- 403
Query: 563 NIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMK 600
V + D+ Y ++ F + G F+ + ++ MK
Sbjct: 404 -----VKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMK 438
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD-ITILWGDIK 561
N+ I CK K++ DA +Y M +I P+V T+ L+ G + +D I +L I
Sbjct: 156 NTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMIL 215
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHH 619
+I V + L+ F + G + V M K+++ + + Y S HH
Sbjct: 216 EDINPTVYT-----FSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHH 268
Score = 38.9 bits (89), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 58/301 (19%), Positives = 113/301 (37%), Gaps = 36/301 (11%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
++ LIN Y + G+N+ + +I K+ + T + +I L G + A D
Sbjct: 49 TLSILINCYSQLGQNALSFSVFANILKKGYGSDAITF-TTLIKGLCLKGEIHKALHFHDK 107
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQ----------------- 448
+ G ++ +Y +L+ KV R A L+++ LVQ
Sbjct: 108 VVAQGFKLNQVSYGTLINGLCKVGQTRAALEFLRRIDGK-LVQPDVVMYNTIIDGLCKDK 166
Query: 449 ------NLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
NL EMV V + + D A L+ +M E T+Y
Sbjct: 167 LVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKD-AIGLLHKMILEDINPTVYTF 225
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
+ I FCK + +A ++ M + ++P + T+ L+ GH + + + ++ + +
Sbjct: 226 SILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIK 285
Query: 563 NIESGV----------LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
++ + + +Y +L+ + G ++ IG M + D Y
Sbjct: 286 MVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYN 345
Query: 613 S 613
S
Sbjct: 346 S 346
>gi|255661092|gb|ACU25715.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 415
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 84/175 (48%), Gaps = 24/175 (13%)
Query: 378 GESTLCSDVIDALIQL----GFLEAA---HDILDDMELAGHPMDSTTYKSLLTAYYKVKM 430
GE + D+++ + + G L A +I DM + +P+ S TY S+++++ K
Sbjct: 244 GEDSFEIDMVNTYLSIFLAKGELSVACKLFEIFTDMGV--NPV-SYTYNSIMSSFVKKGY 300
Query: 431 FREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEM 490
F+EA ++L M ++ +++ V+ + + M ++DLA ++++++
Sbjct: 301 FKEAWSVLHAMGETVNPADIATYNVIIQGLGK--------------MGRADLANAVLEKL 346
Query: 491 REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
+E I N+ I K I +A K++ +M+ I P V T+ L+ HS
Sbjct: 347 MKEGGYLDIVMYNTLINALGKAGRIDEANKLFEQMKASGINPDVVTYNTLIEVHS 401
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K+G+ + +K++ ++F + S VI L + LE A ++++ME
Sbjct: 49 LIDGLYKNGREEAAYTMFRDLKRKGNNFVDGITYSIVILHLCREDQLEEALQLVEEMEGR 108
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-----SCEMVVSERFSEVA 464
G +D T SLL A Y+ + E L+K +R LV +L + E + S+
Sbjct: 109 GFVVDLVTITSLLIALYRRGQWDGTERLMKHIRDGNLVPSLLKWKSAMESSMKTPQSKEK 168
Query: 465 DKSASFTDTSSLMDKSDLAES 485
D F + ++D DL +S
Sbjct: 169 DYRPMFPSVNDIIDILDLTKS 189
>gi|356524758|ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Glycine max]
Length = 875
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 107/280 (38%), Gaps = 20/280 (7%)
Query: 334 LFRNGKLLHSNRAMAKL-INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ 392
L RNG+L ++ ++++ NG K + + L+ SI + + + +I+ L +
Sbjct: 478 LCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLPDGITYTTLINGLCK 537
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
+G LE A +M DS TY + + ++ K A +LK M ++ + L
Sbjct: 538 VGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTL-- 595
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
+ ++ + S + D EM+E+ I N+ I C+G
Sbjct: 596 -----QTYNALILGLGSNNQIFEIYGLKD-------EMKEKGISPDICTYNNIITCLCEG 643
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVS 572
DA+ + M + I P V +F L+ S ++ L+ + +
Sbjct: 644 GKAKDAISLLHEMLDKGISPNVSSFKILIKAFSKSSDFKVACELF-----EVALNICGRK 698
Query: 573 RDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
LY + L GG E+ + + + MYK
Sbjct: 699 EALYSLMFNELLAGGQLSEAKELFEVSLDRYLTLKNFMYK 738
>gi|297737146|emb|CBI26347.3| unnamed protein product [Vitis vinifera]
Length = 862
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 20/172 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+A +G + A + ++ + AG PM++ Y SL+ Y KV EA+ K ++ S
Sbjct: 625 LINAFADVGNVREAVNYVNALRNAGLPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASE 684
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE--------------------S 485
+ ++ + + +SE + + SL K D E
Sbjct: 685 VGPDVYSSNCMIDLYSERSMVKQAEEIFESLKRKGDANEFSFAMMLCMYKRIGKLKEAFQ 744
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
++Q+MRE ++ + N+ + F+ DA+ ++ M E I+P TF
Sbjct: 745 IVQKMRELGLVTDLLSYNNVLGFYAMDGRFKDAVGTFKEMIEAAIQPDDCTF 796
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 82/218 (37%), Gaps = 20/218 (9%)
Query: 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
N LI+ Y K G E L + K+ E T+ V+ + G + A
Sbjct: 231 NSTYGTLIDVYSKGGLTEEALHWLDRMNKQGMEPDEVTM-GVVVQTYKKAGEFKKAEQFF 289
Query: 404 DD--MELAGHP---MDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE 458
+ +E A P + S TY +L+ Y K REA M + ++ N V
Sbjct: 290 KNWSLESASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLREGIIPN----TVTFN 345
Query: 459 RFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDA 518
+ + +SLM K ++E+R T N I K I A
Sbjct: 346 TMIHICGNHGQLEEAASLMQK-------MEELRCPPDTRT---YNILISLHAKHNNIDRA 395
Query: 519 LKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
+++M+E ++ P + ++ L+Y S + + IL
Sbjct: 396 ASYFKKMKEARLEPDLVSYRTLLYAFSIRHLVGEAEIL 433
>gi|413942671|gb|AFW75320.1| hypothetical protein ZEAMMB73_530230 [Zea mays]
Length = 542
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 51/253 (20%), Positives = 103/253 (40%), Gaps = 30/253 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-- 441
+ V+ A G LE A + DD+ +G D+T Y L+ Y + ++A ++ +M
Sbjct: 239 TTVLTAYCAKGDLEGAQQLFDDIIASGRRPDATMYTVLIDGYCHHRKLQDAARIMDEMGA 298
Query: 442 --------------------RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSD 481
RKS ++L+ EM+ + + A D K+
Sbjct: 299 AGVQPNEVTYSVVIEACCKERKSTEARDLTREMLGAGYVPDTP-LCAKVVDVLCQDGKAG 357
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
A + ++M +++ +++ IY+ CK M+ +A K++ + E P++ T+ L+
Sbjct: 358 EANEMWRQMVKKSVPPDNTVVSTLIYWLCKKGMVQEARKLFDEL-ERGFLPSLLTYNSLI 416
Query: 542 YGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
G ++ +W D ++R E + YE L+ F + G + M
Sbjct: 417 IGLCENGELQEAGRVWDDMVERRYEPNAMT-----YEALIKGFCKIGKSNEGYALFKEMM 471
Query: 601 KQNMYVDKLMYKS 613
+ K +Y++
Sbjct: 472 SRGCTPSKFLYQA 484
>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 584
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 85/209 (40%), Gaps = 15/209 (7%)
Query: 337 NGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL 396
N K+ + R +I GY K G +E L +K E + + +I + +
Sbjct: 249 NNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMK-ELGVHPNPVVFNSLIKGYLDITDT 307
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
+ + L ME G D TY +++ A+ + E + M K+ + ++ ++
Sbjct: 308 DGVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSIL 367
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
++ + + D AE+L+ M + + + + I +C +
Sbjct: 368 AKGYVRAG--------------QPDKAEALLNSMTKYGLQANVVIFTTIISGWCAAGKMD 413
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHS 545
AL++Y +M EM ++T+ L++G+
Sbjct: 414 CALRLYEKMNEMGTPLNLKTYETLIWGYG 442
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 66/329 (20%), Positives = 124/329 (37%), Gaps = 57/329 (17%)
Query: 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD---AHSIIILAQIHEMNCQRDE 230
KP T FN ++ G + ++E+M Q G V ++I+I A C ++E
Sbjct: 145 KPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYNILIQAW-----CTKNE 199
Query: 231 LKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPL------- 283
L++ + ++ Y +L + + D A LIL M +Y +
Sbjct: 200 LEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQYNNKVKPNERTC 259
Query: 284 -----------------------------PNPKLRQDAQKPYLISIGSPNLRCGLKLQ-- 312
PNP + K YL + + L L
Sbjct: 260 GIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEE 319
Query: 313 --IMPELLEKDSILKMEGKQELV-----LFRN---GKLLHSNRAMAKLINGYKKHGKNSE 362
I P+++ +I+ L+ +F + ++ +A + L GY + G+ +
Sbjct: 320 FGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRAGQPDK 379
Query: 363 LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422
LL S+ K + + + +I G ++ A + + M G P++ TY++L+
Sbjct: 380 AEALLNSMTK-YGLQANVVIFTTIISGWCAAGKMDCALRLYEKMNEMGTPLNLKTYETLI 438
Query: 423 TAYYKVKMFREAEALLKQMRKSCLVQNLS 451
Y + K +AE LL M +S + +S
Sbjct: 439 WGYGEAKQPWKAEELLVTMEESGVAPEMS 467
>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
Length = 698
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/269 (18%), Positives = 112/269 (41%), Gaps = 19/269 (7%)
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
+A L+ GY + G+ ++ + ++ S + T C +IDA + G ++ +
Sbjct: 318 KAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCL-LIDAYARAGLMDRLEALYQ 376
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
+M ++ Y ++T Y +++ LL++M+++ + + V+ F
Sbjct: 377 EMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGR-- 434
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
+ ++++ +A +M++ + NS I CK +A K+Y +
Sbjct: 435 ---------TRQLEQARIA---FFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYK 482
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
M PT +TF +++G + + D+ ++ + S + + Y TL+ +
Sbjct: 483 MVNDGCAPTAQTFNIVIHGLGEHKRWNDVN----EMVEEMRSKGMFPNVVTYTTLVDVYA 538
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Q F+ +E + MK+ M Y +
Sbjct: 539 QARLFQDAVECLQTMKEDGMGPSPTAYSA 567
>gi|449530988|ref|XP_004172473.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Cucumis sativus]
Length = 347
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 94/224 (41%), Gaps = 28/224 (12%)
Query: 334 LFRNGKLLHSNRAMAKL--INGYKKHGKNSEL---SWLLLSIKKEHHSFGESTLC----- 383
L+R+GK+ +N + ++ I+ H + EL L +K SFG+ +
Sbjct: 91 LYRHGKIDEANLILHQIADIDPIAAHAHSVELPKSDLRHLETQKIVDSFGKKAMSIPMSN 150
Query: 384 ----SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK 439
+ I L + ++ IL D+ L G D+ TY SL+ A V EA L
Sbjct: 151 NIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRD 210
Query: 440 QMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499
M + LV N+ VV KS + D A L ++ + T+
Sbjct: 211 DMINAGLVPNI----VVYNALINGLCKSGNL----------DRARRLFNKLARKGLSPTV 256
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
N+ I +CKG +AL++ +M+E I P+ T+ L++G
Sbjct: 257 VTYNTLIDGYCKGGRTTEALELKDKMREEGICPSSITYSTLIHG 300
>gi|255548349|ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545711|gb|EEF47215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 505
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 21/176 (11%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
E A ++M G D +Y SL+ Y K + +A ++++MR+ +++S +++
Sbjct: 224 EEAELFFEEMRELGIKPDVVSYNSLIDVYCKDREMEKAYKVVEKMRE----EDISPDVIT 279
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
S L+ + D A ++ EM+E + N+ I +C K +G
Sbjct: 280 Y----------TSIIGGLGLVGQPDKARDILNEMKEYGCYPDVAAYNAVIRNYCIAKRLG 329
Query: 517 DALKIYRRMQEMKIRPTVETF--YYLVYGHSSLEMYRDITILWGDIKRNIESGVLA 570
DA + M + P T+ ++ V+ S+ D+ W +R +ESG L
Sbjct: 330 DASNLMDEMASKGLSPNATTYNLFFRVFYWSN-----DLRNSWSLYRRMMESGCLP 380
Score = 38.9 bits (89), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 479 KSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFY 538
+S+ AE +EMRE + NS I +CK + + A K+ +M+E I P V T+
Sbjct: 222 QSEEAELFFEEMRELGIKPDVVSYNSLIDVYCKDREMEKAYKVVEKMREEDISPDVITYT 281
Query: 539 YLVYG 543
++ G
Sbjct: 282 SIIGG 286
>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580 [Vitis vinifera]
gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 108/252 (42%), Gaps = 27/252 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK-------VKMFREA-E 435
+ +ID +LG ++ A IL D G D +TY SL+ + + +F EA E
Sbjct: 324 NSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAME 383
Query: 436 ALLKQMRKSC--LVQNLSCEMVVSERF---SEVADKSAS---------FTDTSSLMDKSD 481
LK C LV+ LS + ++ + +E+++ S + SD
Sbjct: 384 KGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSD 443
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
A++L+ + + L ++ N+ I +CK + +A++I RM + P V T+ ++
Sbjct: 444 -ADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSIL 502
Query: 542 YGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
G Y D+ G K +E G + + Y L +F + E + +I M+
Sbjct: 503 NGLCKAGKYEDV---MGTFKLMMEKGCVP-NIITYNILTESFCKARKVEEALNLIEEMQN 558
Query: 602 QNMYVDKLMYKS 613
+ + D + + +
Sbjct: 559 KGLTPDVVNFGT 570
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 92/424 (21%), Positives = 169/424 (39%), Gaps = 82/424 (19%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
I PD M FN ++H R G + + ++ + + GV + ++ I Q CQR L
Sbjct: 212 ICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGF---CQRAMLN 268
Query: 233 K------------------FKCYIDQLSTPF----AHHYQQ------------FYESLLS 258
+ + I L F A HY + Y S++
Sbjct: 269 EAIRLLDGVGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIID 328
Query: 259 LHFKFDDIDAAGELILDMNRYREPLPNPK--------LRQDAQKPYLISIGSPNLRCGLK 310
+ K + A +++ D ++ +P+ L QD I++ + + GLK
Sbjct: 329 GYCKLGMMQNADQILRD-GAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLK 387
Query: 311 LQIMPELLEKDSILKMEGKQELVLFRNGKLLH--SNRAMAK-------LINGYKKHGKNS 361
P L+ ++++K +Q L+L + KL++ S + +ING K G S
Sbjct: 388 ----PNLVLCNTLVKGLSQQGLIL-QALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVS 442
Query: 362 ELSWLLL-SIKKEH--HSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTY 418
+ L++ +I K H F +TL ID + L+ A +I+D M G D TY
Sbjct: 443 DADNLVIDAIAKGHLPDVFTFNTL----IDGYCKKLKLDNAIEIVDRMWNHGVSPDVITY 498
Query: 419 KSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD 478
S+L K + + K M + V N+ +++E F +
Sbjct: 499 NSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKAR-------------- 544
Query: 479 KSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM-KIRPTVETF 537
K + A +LI+EM+ + + + + FC + A ++++R+ E K T+ T+
Sbjct: 545 KVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATY 604
Query: 538 YYLV 541
++
Sbjct: 605 NIMI 608
>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
Length = 715
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 104/255 (40%), Gaps = 28/255 (10%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHS---FGESTLCSDVIDALIQLGFLEAAHDILD 404
KLI + G+ S+ + +L + ++ + F +TL + + G L+AA ++
Sbjct: 113 TKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTL----VAGYCRYGQLDAARRLIA 168
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
M +A D+ TY ++ EA +LL M L + +V E
Sbjct: 169 SMPVAP---DAYTYTPIIRGLCDRGRVGEALSLLDDM----LHRGCQPSVVTYTVLLEAV 221
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
KS F ++D EMR + I N I C+ + DA + R
Sbjct: 222 CKSTGFGQAMEVLD----------EMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNR 271
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
+ +P ++ ++ G + + + D+ L+ ++ +E + + ++ L+ F
Sbjct: 272 LSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEM---MEKNCMP-NEVTFDMLVRFFC 327
Query: 585 QGGYFERVMEVIGYM 599
+GG ER ++V+ M
Sbjct: 328 RGGMVERAIQVLEQM 342
>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 594
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 87/217 (40%), Gaps = 26/217 (11%)
Query: 350 LINGYKKHGKN-SELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDME 407
LING K G + + WL K E ++ + + S ++D L + G + A ++ +M
Sbjct: 188 LINGLCKTGDTLAAVGWLR---KMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMN 244
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE----- 462
G + TY L+ ++EA +LL +M K + +L ++ + F +
Sbjct: 245 GKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVM 304
Query: 463 -----------VADKSASFTDTS-----SLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506
+ FT S L +K + A + M L I S I
Sbjct: 305 QAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLI 364
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ +CK K I A+ + M +M P V T+ L+ G
Sbjct: 365 HGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGG 401
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 80/194 (41%), Gaps = 15/194 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LINGY G N + LL + KE+ + ++++ + G LE+A +M
Sbjct: 449 LINGYLTKG-NVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVEC 507
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + +Y +L+ + K A +LLK+M + N+ V S K
Sbjct: 508 GLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLS----KENR 563
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
F++ + DK M E+ L + + I C+ A KI+ M++ K
Sbjct: 564 FSEAEKICDK----------MVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRK 613
Query: 530 IRPTVETFYYLVYG 543
P + T+ L+YG
Sbjct: 614 CLPNLYTYSSLIYG 627
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 103/252 (40%), Gaps = 27/252 (10%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ ++ L + +E A ++ M +G T+ +L+ K REAE +L Q+
Sbjct: 166 CNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIF 225
Query: 443 K----------------SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD------KS 480
+ C +NL V +R + S T S+L++ +
Sbjct: 226 QYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVT-YSTLINGLCNEGRV 284
Query: 481 DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
D A +++EM E+ T+Y I C + +A+++ RM++ RP V+T+ L
Sbjct: 285 DEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTAL 344
Query: 541 VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
+ G S L + + G + ++ G L + Y L+ GG F +++ +M+
Sbjct: 345 ISGLSRLG---KLEVAIGLYHKMLKEG-LVPNTVTYNALINELCVGGRFSTALKIFHWME 400
Query: 601 KQNMYVDKLMYK 612
+ Y
Sbjct: 401 GHGSLANTQTYN 412
>gi|255661206|gb|ACU25772.1| pentatricopeptide repeat-containing protein [Citharexylum
montevidense]
Length = 399
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 87/197 (44%), Gaps = 23/197 (11%)
Query: 372 KEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMF 431
++ H G+ L S++I+ +L A I ++ +G D Y S++ + K K+F
Sbjct: 9 EQDHVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGIXPDLVAYNSMINVFGKAKLF 68
Query: 432 REAEALLKQMRKSCLVQNLSC-----EMVVSER--------FSEVADKSASF-------- 470
+EA +L+ +M+ + ++ + M V + F+E+ + SF
Sbjct: 69 KEARSLIXEMKTAGVMPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCSFDLTTCNIM 128
Query: 471 TDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI 530
D +D + A+ L MR+ + N+ + + ++ G+AJ ++R MQ I
Sbjct: 129 IDVYGQLDMAKEADKLFWSMRKIGIEPNVISYNTLLRVYGDAELFGEAJHLFRLMQRKNI 188
Query: 531 RPTVETF--YYLVYGHS 545
V T+ ++YG +
Sbjct: 189 EQNVVTYNTMMMIYGKT 205
>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
Length = 833
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 105/258 (40%), Gaps = 23/258 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID L +LG LE A+ IL M G +D T+ +L+ + K+ ++ L + M
Sbjct: 413 TALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENM-- 470
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
V R A F D K + A +++ +M + + ++
Sbjct: 471 ------------VENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHT 518
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDI-TILWGDIKR 562
I C+ +LK+ RM++ P V T+ ++ G + + TIL+
Sbjct: 519 ILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILF----- 573
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK---SEFLKHH 619
++ S ++ + Y L+ ++ G +R +++ M K + +Y S F+ +
Sbjct: 574 SMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSN 633
Query: 620 KHLYRRLKVSNARTEAQS 637
+ R S +A+S
Sbjct: 634 TAIGARALSSTGDLDARS 651
>gi|356555026|ref|XP_003545840.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g38730-like [Glycine max]
Length = 587
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 109/279 (39%), Gaps = 41/279 (14%)
Query: 362 ELSWLLLSIKKEHHSFG------ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDS 415
+ SW ++ I EH F E D + + L L HD ++S
Sbjct: 75 QCSWAMIHILTEHKHFKTAQHVLEKIAHKDFLSSPSVLSTLVRTHD--------NQEVNS 126
Query: 416 TTYKSLLTAYYKVKMFREAEALLKQMR--------KSC------LVQNLSCEMV--VSER 459
L+ Y K KM ++A + +QMR +C L+++ MV + +R
Sbjct: 127 QVLSWLVIHYAKSKMTQDAIQVFEQMRLHEVKPHLHACTVLLNSLLKDGVTHMVWKIYKR 186
Query: 460 FSEVADKSASFT-----DTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKM 514
+V + S + AE L+ EM + L I+ N+ + +CK M
Sbjct: 187 MVQVGVVPNIYIYNCLFHACSKSGDVERAEQLLNEMDVKGVLQDIFTYNTLLSLYCKKGM 246
Query: 515 IGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD 574
+AL I RM+ I + ++ L+YG R+ ++ +IK + V
Sbjct: 247 HYEALSIQNRMEREGINLDIVSYNSLIYGFCKEGRMREAMRMFSEIKNATPNHV------ 300
Query: 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y TL+ + + E +++ M+ + +Y + Y S
Sbjct: 301 TYTTLIDGYCKTNELEEALKMCKLMEAKGLYPGVVTYNS 339
>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
Length = 331
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID + L AA D+ D M + + TY +L+ K + A +L M K
Sbjct: 118 NTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVK 177
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ N++ + + F +V + D A L+++M + T+ N
Sbjct: 178 KGVTPNVATYSCLIDGFCKV--------------RRVDEAHKLLEQMVTQGIAPTVVTYN 223
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+ C+ + DA K++R M + + PTV T+ L+
Sbjct: 224 ILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLL 261
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 14/160 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID L + G ++AA ++LD M G + TY L+ + KV+ EA LL+QM
Sbjct: 153 TTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQM-- 210
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
V++ + ++ DK + A L + M + T+ N
Sbjct: 211 ------------VTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYN 258
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ + C K + A ++Y M P T+ L +G
Sbjct: 259 TLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWG 298
>gi|255661106|gb|ACU25722.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 310
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 18/179 (10%)
Query: 378 GESTLCSDVIDALIQL----GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE 433
GE + D+++ + + G L A + + G S TY S+++++ K F+E
Sbjct: 139 GEDSFEIDMVNTYLSIFLAKGKLSVACKLFEIFTNMGVDPVSYTYNSIMSSFIKKGYFKE 198
Query: 434 AEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE 493
A +L M ++ +++ V+ + + M ++DLA ++++++ +E
Sbjct: 199 AWGVLHAMGETVYPADIATYNVIIQGLGK--------------MGRADLANAVLEKLIKE 244
Query: 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
I N+ I K I +A K++ +M+ I P V T+ L+ HS +D
Sbjct: 245 GGYLDIVMYNTLINALGKAGRIDEANKLFGQMKGSGINPDVVTYNTLIEVHSKAGRLKD 303
>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 100/250 (40%), Gaps = 25/250 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S+++D L + G + +A D+++ ++ G Y +L+ + K EAE+L M
Sbjct: 324 SNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGH 383
Query: 444 SCLVQNLSCEMVVSERF----------------SEVADKSASFTDTSSL-----MDKSDL 482
L N ++ + F +EV K+ + +S + + K
Sbjct: 384 KGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRA 443
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A+SL EM + S I +CK + +A ++Y M I P TF L+
Sbjct: 444 AKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALIS 503
Query: 543 GHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602
G + L+G++ +E V+ + Y L+ + G R E++ M ++
Sbjct: 504 GLCHANRMAEANKLFGEM---VEWNVIP-NEVTYNVLIEGHCKEGNTVRAFELLDEMVEK 559
Query: 603 NMYVDKLMYK 612
+ D Y+
Sbjct: 560 GLVPDTYTYR 569
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 15/195 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LIN K GK E L ++ + F S +ID+ + G L+ A L M
Sbjct: 361 LINSMCKDGKLDEAESLFNNMGHKGL-FPNDVTYSILIDSFCKRGKLDVALHFLGKMTEV 419
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G Y SL++ + K+ R A++L +M + L N+ + + + + +
Sbjct: 420 GIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNA 479
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
F L EM + Y + I C + +A K++ M E
Sbjct: 480 F--------------RLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWN 525
Query: 530 IRPTVETFYYLVYGH 544
+ P T+ L+ GH
Sbjct: 526 VIPNEVTYNVLIEGH 540
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 109/265 (41%), Gaps = 28/265 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI G+ + GK + +W++ I ++ + + + +I + G ++ A +LD M +A
Sbjct: 155 LIRGFCRIGKTKKATWVM-EILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVA 213
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREA-EALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
D TY ++L ++A E L +Q++K C ++ +++ E K +
Sbjct: 214 P---DVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILI-----EATCKES 265
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
L+D EMR + + + N I CK + +A+K M
Sbjct: 266 GVGQAMKLLD----------EMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSY 315
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFL-QG 586
+P V T ++ S + D L D +++ V+ + +L+NFL +
Sbjct: 316 GCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFN------ILINFLCRQ 369
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMY 611
G R ++++ M + L Y
Sbjct: 370 GLLGRAIDILEKMPMHGCTPNSLSY 394
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 84/417 (20%), Positives = 160/417 (38%), Gaps = 71/417 (17%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
PD + ++ R G + K +ME++ Q+G V D + +L + C+ E+
Sbjct: 147 PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGY---CKSGEIDNA 203
Query: 235 KCYIDQLST-PFAHHYQQFYESLLSLHFKFDDIDAAGEL-----ILDMNRYREPLPNPKL 288
+D+++ P Y +L +G+L +LD +E P+
Sbjct: 204 LQVLDRMNVAPDVVTYNTILRTLCD----------SGKLKQAMEVLDRQLQKECYPDV-- 251
Query: 289 RQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELV--LFRNGKLLHSNRA 346
LI G ++++ E+ K S + L+ + + G+L +
Sbjct: 252 ---ITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEA--- 305
Query: 347 MAKLINGYKKHGKNSEL---SWLLLSIKKEHHSFGESTLCSD---------------VID 388
K +N +G + + +L S+ L SD +I+
Sbjct: 306 -IKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILIN 364
Query: 389 ALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK-VKMFREAEALLKQMRKSC-- 445
L + G L A DIL+ M + G +S +Y LL + K KM R E L + + C
Sbjct: 365 FLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYP 424
Query: 446 -----------LVQNLSCEMVVSERFSEVADKSAS--------FTDTSSLMDKSDLAESL 486
L ++ ++ V E ++++ K S D S + K++ A L
Sbjct: 425 DIVTYNTLLTALCKDGKVDVAV-EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKL 483
Query: 487 IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ EMR + I +S + + + +A+K + ++ + IRP T+ ++ G
Sbjct: 484 LDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLG 540
>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 14/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
++V+D L + G +EAA ++ DM+ G D+ TY L+ + A ALL +M +
Sbjct: 311 NNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEE 370
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ N+ + + + ++ SA A L EM+E + +
Sbjct: 371 NGCAPNIITYNTLISSYGKWSNLSA--------------ATRLFLEMKERGVAPNVVSYS 416
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
S I F K A+ ++R M+ P T+ L+
Sbjct: 417 SLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLI 454
>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
mitochondrial [Vitis vinifera]
Length = 817
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 29/175 (16%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-----RKSCLVQN- 449
L+ A D+ DM G D Y +L+ AY K +A AL M + +C++ +
Sbjct: 313 LKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNCVIVSS 372
Query: 450 ---LSCEMVVSERFSEVADKSASFTDTSSLMD---------------KSDLAESLIQEMR 491
CEM ++ SEV D+ F D+ +D K + A L+ EM+
Sbjct: 373 ILQCLCEMGMA---SEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMK 429
Query: 492 EEAALSTIYKLNSSIYFFC-KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
+ + I +C +GK++ DA ++ M+E I P + T+ LV G S
Sbjct: 430 GRRMSLDVVHYTTLIAGYCLQGKLV-DAKNMFEEMKERGIEPDIVTYNILVGGFS 483
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 2/173 (1%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I A + G ++ A + D + G D TY ++ Y +V REA + M++
Sbjct: 614 LIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERG 673
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL-AESLIQEMREEAALSTIYKLNS 504
+ ++ VV + S+V K A S ++ + A EM+E +
Sbjct: 674 IKPDVITYTVVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIKPDVVCYTV 733
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL-EMYRDITIL 556
I CK + DA+ +Y M ++P + T+ L+ S +M R IT++
Sbjct: 734 LIDSHCKTNNLQDAINLYDEMIARGLQPDIVTYTALLSSCCSRGDMDRAITLV 786
>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
Length = 687
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 15/195 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+GY K G+ E+ L+ +++ T + +I+ + G +E A+ M+
Sbjct: 229 LIDGYGKCGELDEVEQLVEEMRRSGCKADVVTY-NALINCFCKFGRMETAYGYFAAMKRE 287
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G + T+ + + A+ K + REA L QMR + N F+
Sbjct: 288 GVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALN---------EFTYTC----- 333
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D + + D A L+ EM + + + CK + + +A + R M++
Sbjct: 334 LIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAG 393
Query: 530 IRPTVETFYYLVYGH 544
+R + L++GH
Sbjct: 394 VRANELLYTTLIHGH 408
Score = 47.0 bits (110), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 98/233 (42%), Gaps = 18/233 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VID L + G L A + M+ G D T+ SL+ Y K E E L+++MR+S
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRS- 252
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
C+ ++V +A + + + A M+ E ++ + ++
Sbjct: 253 -----GCK-------ADVVTYNA-LINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTF 299
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
+ FCK ++ +A+K++ +M+ + T+ L+ G D +L ++ R
Sbjct: 300 VDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQ-- 357
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKH 618
GV ++ Y L+ + +V+ M+K + ++L+Y + H
Sbjct: 358 -GV-PLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGH 408
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 481 DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
D + L++ + E+ ++ N I F CK + +A ++ RM+EM P V TF L
Sbjct: 170 DRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSL 229
Query: 541 VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
+ G+ ++ L +++R SG A Y L+ F + G E MK
Sbjct: 230 IDGYGKCGELDEVEQLVEEMRR---SGCKA-DVVTYNALINCFCKFGRMETAYGYFAAMK 285
Query: 601 KQNMYVDKLMYKS 613
++ + + + + +
Sbjct: 286 REGVMANVVTFST 298
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 59/289 (20%), Positives = 122/289 (42%), Gaps = 30/289 (10%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ ++ + K G E L ++ + E T + +ID + G L+ A +LD+M
Sbjct: 297 STFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTY-TCLIDGTCKAGRLDDAIVLLDEMV 355
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVSERF------ 460
G P++ TY L+ K + EAE +L+ M K+ + N L ++ F
Sbjct: 356 RQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSE 415
Query: 461 ------SEVADKS--------ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506
SE+ +K + + K D A+SL+ +M +E+ L Y + +++
Sbjct: 416 KALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKM-DESGLEPNYIIYTTM 474
Query: 507 YFFC-KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NI 564
C K + +A+ + +++ + +P V T+ L+ G + + ++ +
Sbjct: 475 MDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGL 534
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ V A Y L+ + G +++ M + M +DK++Y +
Sbjct: 535 DPNVQA-----YTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTA 578
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 42/215 (19%), Positives = 90/215 (41%), Gaps = 18/215 (8%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
E A +L +M+ G +D + Y +L+ V EA++LL +M +S L N ++
Sbjct: 415 EKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPN----YII 470
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ KS + A +++Q++ + + + I CK I
Sbjct: 471 YTTMMDACFKSGKVPE----------AIAMLQKILDSGFQPNVITYCALIDGLCKAGSID 520
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLY 576
+A+ + +M+++ + P V+ + LV G + L+ ++ + G +++ + +Y
Sbjct: 521 EAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEM---VHKG-MSLDKVVY 576
Query: 577 ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
LL +L+ G + M + +D Y
Sbjct: 577 TALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCY 611
>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 536
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 36/218 (16%)
Query: 350 LINGYKKHGKNSELSWLL-----LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
+I+GY K GK E S LL L I + +F + ++D + G + A +I
Sbjct: 283 MISGYCKAGKMQEASVLLDDMLRLGIYPTNVTF------NVLVDGYAKAGEMHTAEEIRG 336
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
M G D T+ SL+ Y +V + L ++M + N
Sbjct: 337 KMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPN--------------- 381
Query: 465 DKSASFTDT---SSLMDKSDL--AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
+FT + ++L ++ L A L+ ++ + + + N I FCK + +A+
Sbjct: 382 ----AFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAI 437
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGHS-SLEMYRDITIL 556
I M++ K +P TF L+ GH M+ ++I
Sbjct: 438 VIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIF 475
>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 450
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 34/240 (14%)
Query: 400 HDILDD----MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
H+ DD +L P D T+ +++ Y + K E LL+++ + LV N +
Sbjct: 198 HNRFDDAKHMFDLMASP-DVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 256
Query: 456 VSERFSEVADKSAS------------FTDTSS-------LMDKSDLAESLIQEMREEAAL 496
+ F EV + +A+ DT + + L E+L E+ E +
Sbjct: 257 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEAL--ELFEVIQM 314
Query: 497 STI----YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
S I N I+ CKG + +A ++ + + P V+T+ ++ G D
Sbjct: 315 SKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISD 374
Query: 553 ITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
+L+ +K N Y TL+ L+ G ++ +E+I M+ D K
Sbjct: 375 ANVLFHKMKDNGHEP----DNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIK 430
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 20/205 (9%)
Query: 338 GKLLHSNRAM-AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL 396
GK LH + ++NG K G +++ + LLS +E H + + S +ID L + G
Sbjct: 38 GKGLHIDVVTYGTIVNGMCKMG-DTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHH 96
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + +M G + TY ++ + + +A+ LL+ M + + ++ +++
Sbjct: 97 SDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM----IEREINPDVLT 152
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ K + AE L EM NS IY FCK
Sbjct: 153 FNALISASVKEGKLFE----------AEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFD 202
Query: 517 DALKIYRRMQEMKIRPTVETFYYLV 541
DA + M ++ P V TF ++
Sbjct: 203 DA----KHMFDLMASPDVVTFNTII 223
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 15/146 (10%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
LEAA +++ M G +D TY +++ K+ + A LL +M ++ + ++
Sbjct: 27 LEAAA-LVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSA 85
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+ +R K +D A+ L EM E+ ++ N I FC
Sbjct: 86 IIDRLC----KDGHHSD----------AQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRW 131
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLV 541
DA ++ R M E +I P V TF L+
Sbjct: 132 SDAQRLLRDMIEREINPDVLTFNALI 157
>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g04810, chloroplastic; AltName: Full=Maize PPR4
homolog; Short=AtPPR4; Flags: Precursor
gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 952
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 32/232 (13%)
Query: 339 KLLH--SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL 396
KL H + R +I+GY K G + S + + + + +I+ L++ +
Sbjct: 582 KLRHRPTTRTFMPIIHGYAKSG-DMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQM 640
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREA-------------------EAL 437
E A +ILD+M LAG + TY ++ Y V +A EAL
Sbjct: 641 EKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEAL 700
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD----KSDLAES--LIQEMR 491
LK KS +Q+ + V++ S SF + L+D + D+ E+ LIQ+M+
Sbjct: 701 LKACCKSGRMQSA---LAVTKEMSARNIPRNSFV-YNILIDGWARRGDVWEAADLIQQMK 756
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+E I+ S I K + A + M+ + ++P ++T+ L+ G
Sbjct: 757 KEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKG 808
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/219 (17%), Positives = 96/219 (43%), Gaps = 20/219 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S ++ + G EAA D+ + ++++ Y ++ A+ + AEAL+++M +
Sbjct: 383 SVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEE 442
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ ++ + + ++ VAD+ + + ++E T+
Sbjct: 443 EGIDAPIAIYHTMMDGYTMVADEKKGLV--------------VFKRLKECGFTPTVVTYG 488
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKR 562
I + K I AL++ R M+E ++ ++T+ ++ G L+ + + ++ D +K
Sbjct: 489 CLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKE 548
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
++ V+ LY ++ F G +R ++ + M+K
Sbjct: 549 GMKPDVI-----LYNNIISAFCGMGNMDRAIQTVKEMQK 582
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 68/149 (45%), Gaps = 24/149 (16%)
Query: 417 TYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSL 476
TY L+ Y KV +A + + M++ + NL ++ F ++ D + +F
Sbjct: 486 TYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAF------ 539
Query: 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
++ ++M +E + N+ I FC + A++ + MQ+++ RPT T
Sbjct: 540 --------AVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRT 591
Query: 537 FYYLVYGHSSLEMYRDITILWGDIKRNIE 565
F +++G++ GD++R++E
Sbjct: 592 FMPIIHGYAKS----------GDMRRSLE 610
>gi|357138611|ref|XP_003570884.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Brachypodium distachyon]
Length = 864
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 99/241 (41%), Gaps = 55/241 (22%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+ K G+ +E+ LL + ++ +S ++ C+ +ID L + LE A DI+D M
Sbjct: 425 LLQSLLKAGRTTEVERLLERMSEKGYSL-DTASCNIIIDGLCRNSKLEMAMDIVDGMWNE 483
Query: 410 GH------------------------PMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
G P D TY +L+ A K F EA+ L +M
Sbjct: 484 GRLALRRLGNSFVSLVSDSSISKSCLP-DRITYSTLMNALCKEGRFDEAKKKLVEM---- 538
Query: 446 LVQNLSCEMVVSERF---------SEVA-------DKSASFTDTSSL---------MDKS 480
+ +++S + V+ + F + +A +K + T S KS
Sbjct: 539 IGKDISPDSVIYDTFIHGYCMHGKTSLAIKVLRDMEKRSCNPSTRSYNLLIWGFQEKQKS 598
Query: 481 DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
D L+ EM+E+ S + NS I FC M+ A+ + M + +I P V +F L
Sbjct: 599 DEILKLMSEMKEKGISSNVMTYNSLIKSFCGRGMVNKAMPLLDEMLQNEIVPNVTSFGLL 658
Query: 541 V 541
+
Sbjct: 659 I 659
>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
Length = 341
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+E A + ++M GH S TY ++ A +VKM +A+ +L M ++ +L +
Sbjct: 129 VERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNM 188
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+ RF++ + +MDK A L EM + + NS + FCK +
Sbjct: 189 LINRFAK-----------AGMMDK---AMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKV 234
Query: 516 GDALKIYRRMQEMKIRPTVETF 537
+A K++ M+ I P T+
Sbjct: 235 EEANKLFAEMKARGIFPNGRTY 256
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
VIDAL+++ E A +LD M G D TY L+ + K M +A L +M +
Sbjct: 154 VIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRG 213
Query: 445 CLVQNLSCEMVV------------SERFSEVADKS--------ASFTDTSSLMDKSDLAE 484
C+ ++ VV ++ F+E+ + S TD + A
Sbjct: 214 CIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAH 273
Query: 485 SLIQEMREEAALSTI--YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
+ + EMR+E + I L S+I KGK+ ++ R M E +P + TF
Sbjct: 274 AYLVEMRKEGLVDAISYVALISTICKLGKGKL---GFQLLREMLEKGFKPNLVTF 325
>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
Length = 563
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 96/483 (19%), Positives = 183/483 (37%), Gaps = 85/483 (17%)
Query: 104 ARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLS 163
R+Q+P A M+GR +P S+ + + ++K SNF + VF +
Sbjct: 106 VRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIK--------SNFFEKAWRVF---N 154
Query: 164 AEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHE 223
K N +K D F +++ C G KG ++ M + G+ + ++++ + +
Sbjct: 155 ETKGN----VKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGL---SPNVVVYTTLID 207
Query: 224 MNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPL 283
C+ ++++ K ++ Q Y L++ FK EL
Sbjct: 208 GCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELY---------- 257
Query: 284 PNPKLRQDAQKPYLISIGSPNLRC------GLKLQIMPELLEKDSILKMEGKQELV--LF 335
K++ P + + S RC ++ E+ E+ + L+ L
Sbjct: 258 --EKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLC 315
Query: 336 RNGKLLHSNRAMAK---------------LINGYKKHGKNSELSWLLLSIKKEHHSFGES 380
+ ++L + R M + LI+GY G + S L +K S +
Sbjct: 316 QERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLA 375
Query: 381 TLCSDVIDALIQLGFLEAAH-----DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAE 435
T ++ GF EA + D++ +ME G TY L+ A + +A
Sbjct: 376 TY------NILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAF 429
Query: 436 ALLKQMRKSCLVQNLSCEMVVSERFSEVAD-KSAS--FTDTSSL-MDKSDL--------- 482
+ M K+ LV ++ V+ V D K AS F + + +D+
Sbjct: 430 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGY 489
Query: 483 --------AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
A L++EM E + + NS+I CK + +A + + M E+ ++P++
Sbjct: 490 CKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELGLKPSI 549
Query: 535 ETF 537
+
Sbjct: 550 SIW 552
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 106/264 (40%), Gaps = 31/264 (11%)
Query: 369 SIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV 428
++K + +SFG +I ++G+L+ ++L ME G + Y +L+ K
Sbjct: 159 NVKLDVYSFG------IMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKN 212
Query: 429 KMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS----------------FTD 472
+ L +M + +V N V+ F ++ K +T
Sbjct: 213 GDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTY 272
Query: 473 TSSLM-----DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
S + K + A L EMRE + N+ I C+ + + +A ++ RM+
Sbjct: 273 NSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKR 332
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
+ P + ++ L+ G+ S+ + L+ +K + +S LA Y L+ F +
Sbjct: 333 DGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLAT----YNILIAGFSEAK 388
Query: 588 YFERVMEVIGYMKKQNMYVDKLMY 611
V +++ M+ + + K+ Y
Sbjct: 389 NSAGVTDMVREMEARGLSPSKVTY 412
>gi|356565780|ref|XP_003551115.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Glycine max]
Length = 622
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 69/384 (17%), Positives = 159/384 (41%), Gaps = 63/384 (16%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
+KPD+ FN +++A FG+ + +++ M ++G+ A + L + + + + DE
Sbjct: 196 MKPDSRFFNALVNAFAEFGNIEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESI 255
Query: 233 KFKCYIDQLST-----PFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPK 287
K +D +S P +L K + A ++ K
Sbjct: 256 KL---LDLMSIEGNVKPNLKTCNMLIRALC----KMEHTSEAWNVVY------------K 296
Query: 288 LRQDAQKPYLISIGSPNL---RCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSN 344
+ +P ++S + + + G +Q+ +LE + RNG L ++
Sbjct: 297 MTTSGMQPDVVSFNTVAISYAQNGKTVQVEAMILE--------------MRRNG-LKPND 341
Query: 345 RAMAKLINGYKKHGKNSELSWLLLSIKK---EHHSFGESTLCSDVIDALIQLGFLEAAHD 401
R +I+GY + GK E + IK + + ++L + +D + + G ++
Sbjct: 342 RTCTIIISGYCREGKVREALRFVYRIKDLGLQPNLIILNSLVNGFVDTMDRDG----VNE 397
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
+L+ ME D TY +++ A+ + + + + M KS + + ++++ +
Sbjct: 398 VLNLMEEFYIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDGHAYSILAKGYV 457
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
+ M+K AE L+ M + + + + +C + +A+++
Sbjct: 458 RAQE-----------MEK---AEELLTVMTKSGVQPNVVIFTTVMSGWCSVGRMDNAMRV 503
Query: 522 YRRMQEMKIRPTVETFYYLVYGHS 545
+ +M E + P ++TF L++G++
Sbjct: 504 FDKMGEFGVSPNLKTFETLIWGYA 527
>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
Length = 497
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 107/268 (39%), Gaps = 27/268 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G K + S+ LL S+K S T + ++D L + + AA ++L +M A
Sbjct: 119 LIDGLCKANRVSQAVELLESMKARGCSPDVITY-TILVDGLCKESKVAAAWEVLREMLDA 177
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVSE--RFSEVADK 466
G + TY SLL + + +A AL++ M + C ++ ++ + V D
Sbjct: 178 GCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDA 237
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
A D ++DK + +I M I CK + +++ + RR
Sbjct: 238 CAMLAD---MIDKGGTPDLMIYNML--------------INGLCKADQVDESIALLRRAV 280
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQ 585
I+P V T+ ++YG + L +K R V+ LY TL+ +
Sbjct: 281 SGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVI-----LYSTLIDGLCK 335
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G + ++ M D + Y +
Sbjct: 336 AGKVDEAFDLYEVMTGDGCDADVVTYST 363
>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 364 SWL-LLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYK 419
SW +L + +E S G + CS V+ A + G L A D +++ G+ + TY
Sbjct: 268 SWRKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYN 327
Query: 420 SLLTAYYKVKMFREAEALLKQMRK-SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD 478
+LL + K ++ EA ++LK+M + +C +++ +V+ A A F+ +++
Sbjct: 328 ALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVA------AYARAGFSKEAAV-- 379
Query: 479 KSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
+I+ M ++ + + I + K +ALK++ M+E P T+
Sbjct: 380 -------VIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTY 431
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 68/150 (45%), Gaps = 26/150 (17%)
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G+ D + S+L+ + + M+ +AE +L+ + + L +L
Sbjct: 633 GYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDL------------------- 673
Query: 470 FTDTSSLMD------KSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
+SLMD + AE +++ + + + N+ I FC+ ++ +A+++
Sbjct: 674 -VTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLS 732
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDI 553
M E IRP + T+ V G++++ MY +I
Sbjct: 733 EMTERGIRPCIFTYNTFVSGYTAMGMYGEI 762
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 99/252 (39%), Gaps = 35/252 (13%)
Query: 388 DALIQL----GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+AL+Q+ G A +L +ME P DS TY L+ AY + +EA +++ M +
Sbjct: 327 NALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQ 386
Query: 444 SCLVQNLSCEMVVSERFSEVADK------------------SASFTDTSSLMDKSDLAES 485
++ N V + + + + + ++ S++ K +
Sbjct: 387 KGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNE 446
Query: 486 LIQ---EMREEAALSTIYKLNSSIYFFCKGKMIGDAL-KIYRRMQEMKIRPTVETFYYLV 541
+I+ +M+ N+ I C K + + +++R M+ P +TF L+
Sbjct: 447 MIKMLCDMKSNGCFPNRATWNT-ILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLI 505
Query: 542 --YGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
YG E+ D + ++G++ R + + Y LL + G + VI M
Sbjct: 506 SAYGRCGSEV--DASKMYGEMTRAGFNACVTT----YNALLNALARKGDWRSGENVISDM 559
Query: 600 KKQNMYVDKLMY 611
K + + Y
Sbjct: 560 KSKGFKPTETSY 571
>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
Length = 684
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 104/254 (40%), Gaps = 28/254 (11%)
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHS---FGESTLCSDVIDALIQLGFLEAAHDILDD 405
KLI + G+ S+ + +L + ++ + F +TL + + G L+AA ++
Sbjct: 83 KLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTL----VAGYCRYGQLDAARRLIAS 138
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD 465
M +A D+ TY ++ EA +LL M L + +V E
Sbjct: 139 MPVAP---DAYTYTPIIRGLCDRGRVGEALSLLDDM----LHRGCQPSVVTYTVLLEAVC 191
Query: 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
KS F ++D EMR + I N I C+ + DA + R+
Sbjct: 192 KSTGFGQAMEVLD----------EMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRL 241
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ 585
+P ++ ++ G + + + D+ L+ ++ +E + + ++ L+ F +
Sbjct: 242 SSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEM---MEKNCMP-NEVTFDMLVRFFCR 297
Query: 586 GGYFERVMEVIGYM 599
GG ER ++V+ M
Sbjct: 298 GGMVERAIQVLEQM 311
>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats [Arabidopsis thaliana]
gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 632
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 20/213 (9%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
++D M G+ D+ T+ +L+ + EA AL+ QM + +L V
Sbjct: 175 LVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLC 234
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
+ D DLA SL+++M + + + N+ I CK K + DAL +
Sbjct: 235 KRGD--------------IDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNL 280
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLL 580
+ M IRP V T+ L+ + + D + L D I+R I V+ + L+
Sbjct: 281 FTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVT-----FSALI 335
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
F++ G ++ M K+++ D Y S
Sbjct: 336 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 368
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 120/286 (41%), Gaps = 26/286 (9%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
++NG K G + +L+ LL ++ + + + +ID L + ++ A ++ +M+
Sbjct: 227 GTVVNGLCKRG-DIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMD 285
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM--RK--------SCLVQNLSCE--MV 455
G D TY SL++ + +A LL M RK S L+ E +V
Sbjct: 286 NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLV 345
Query: 456 VSER-FSEVADKS--------ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506
+E+ + E+ +S +S + + D+ D A+ + + M + + ++ I
Sbjct: 346 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLI 405
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566
FCK K + + ++++R M + + T+ L++G RD K+ +
Sbjct: 406 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQA---RDCDNAQMVFKQMVSV 462
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
GV + Y LL + G + M V Y+++ M D Y
Sbjct: 463 GVHP-NILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYN 507
>gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g65820
gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana]
gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 108/259 (41%), Gaps = 22/259 (8%)
Query: 326 MEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD 385
ME K LV L++GY GK ++ LL +++ F + C
Sbjct: 269 MEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRR--RGFEPNANCYT 326
Query: 386 V-IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
V I AL ++ +E A + +ME D TY +L++ + K + +L M K
Sbjct: 327 VLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKK 386
Query: 445 CLVQNLSCEMVVSERFSEVA-DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
L+ + M + VA +K SF + LM+K MR+ I N
Sbjct: 387 GLMPSELTYMHIM-----VAHEKKESFEECLELMEK----------MRQIEYHPDIGIYN 431
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
I CK + +A++++ M+E + P V+TF ++ G +S + + K
Sbjct: 432 VVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEAS---DHFKEM 488
Query: 564 IESGVLAVSRDLYETLLLN 582
+ G+ +VS+ LLLN
Sbjct: 489 VTRGLFSVSQYGTLKLLLN 507
>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
Length = 742
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 71/194 (36%), Gaps = 15/194 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LIN K G + L+ L K + + +ID L LG L A D+L DME
Sbjct: 397 LINALCKVG-DPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMEST 455
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G P + TY +++ K EAE + QM + +N A +
Sbjct: 456 GCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN--------------AITFNT 501
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D K D A LI +M E NS + +CK I A I M
Sbjct: 502 LIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 561
Query: 530 IRPTVETFYYLVYG 543
V T+ L+ G
Sbjct: 562 FEVDVVTYGTLING 575
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 112/297 (37%), Gaps = 34/297 (11%)
Query: 327 EGKQELVLFRNGKLLHSNRAMAK-----LINGYKKHGK-NSELSWLLLSIKKEHHSFGES 380
EG E L ++L + K LINGY K G+ L ++ I +
Sbjct: 229 EGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEP--DQ 286
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
+ ++ L Q + A ++D M GH D TY ++ K EA+ +L Q
Sbjct: 287 ITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 346
Query: 441 M-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499
M + CL + ++ A+ + L + DLA +++ + +
Sbjct: 347 MVDRGCLPDITTFNTLI-----------AALCTGNRLEEALDLA----RQVTVKGVSPDV 391
Query: 500 YKLNSSIYFFCKGKMIGD---ALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
Y N I CK +GD AL+++ M+ P T+ L+ SL
Sbjct: 392 YTFNILINALCK---VGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKAL-- 446
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
D+ +++ES S Y T++ + E EV M Q + + + + +
Sbjct: 447 --DLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNT 501
>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
Length = 866
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 104/251 (41%), Gaps = 33/251 (13%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+ + G+ +E LL + ++ +S ++ C+ +ID L + L+ A DI+D M
Sbjct: 427 LLQSLWRAGRTTEAERLLERMNEKGYSL-DTAGCNIIIDGLCRNSRLDVAMDIVDGMWEE 485
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G S L+ + L Q+ S L+ L E RF E
Sbjct: 486 GSGALGRLGNSFLSVVSDSSI--SQRCLPDQITYSILISALCKE----GRFDEA------ 533
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
K L E +++++ + S IY ++ I+ +CK A+K+ R M++
Sbjct: 534 ---------KKKLLEMIVKDISPD---SVIY--DTFIHGYCKHGKTSLAIKVLRDMEKKG 579
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGGY 588
P+ T+ L+ G +I L ++K + I V+ Y +L+ +F Q G
Sbjct: 580 CNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMT-----YNSLIKSFCQQGM 634
Query: 589 FERVMEVIGYM 599
+ M ++ M
Sbjct: 635 VNKAMPLLDEM 645
>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
Length = 1090
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 90/426 (21%), Positives = 167/426 (39%), Gaps = 84/426 (19%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD--AHSIIILAQIHEMNCQ----- 227
PD + ++L R G L ++++M + GVV D A++ ++ I+E +
Sbjct: 607 PDIHTYTILLSGFCRKGKILPALVMLQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYV 666
Query: 228 -RDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNP 286
++ + K Y D ++ Y SL++ + K +++ ++ DM + E PN
Sbjct: 667 FQEIICKEGLYADCIA----------YNSLMNGYLKGGNVNTIKRMMSDMYQ-NEVYPNS 715
Query: 287 K-----------------------------LRQDAQKPYLISIGSPNLRCGLKLQIMPEL 317
+R D L+ +G CGL + I +
Sbjct: 716 ASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLS--ECGL-IDIAVKF 772
Query: 318 LEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSF 377
LEK + +EG + LI + + K L +K H S
Sbjct: 773 LEK---MVLEG-----------IFPDKLVFDILITSFSEKSKMHNALRLFNCMKCLHLSP 818
Query: 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
T S +I+ LI+ +L+ +H++L +M G + T Y +L+ A +V A L
Sbjct: 819 SSKTF-SAMINGLIRKNYLDQSHEVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRL 877
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLI--QEMREEAA 495
++M+ +V +EVA+ S L L E++I M
Sbjct: 878 KEEMKAIGIVP------------AEVAESSI----IRGLCRCGKLEEAVIVFSNMMRSGM 921
Query: 496 LSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITI 555
+ T+ + ++ CK I DAL + R M+ +++ V ++ L+ G + D
Sbjct: 922 VPTVATFTTLMHSLCKESKIADALHLKRLMELCRLKVDVVSYNVLITGLCKDKHISDALD 981
Query: 556 LWGDIK 561
L+G++K
Sbjct: 982 LYGEMK 987
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 20/224 (8%)
Query: 391 IQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN- 449
++ G +AA +L+DME D TY ++ ++K A LLK+MRK L +
Sbjct: 200 VKKGRFKAALCVLEDMERDSIQADIYTYNIMIDKLCRIKRSARAFLLLKRMRKDDLTPDE 259
Query: 450 LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFF 509
+ +++ F E K + A + M + + ++ + I +
Sbjct: 260 CTYNTLINGFFGE---------------GKINHARCVFNHMLRQTLVPSVATYTTMIDGY 304
Query: 510 CKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVL 569
C+ + I AL + M+ + P+ T+ L+ G+ + M L D+K S +
Sbjct: 305 CRNRRIDKALSVLSEMEITGVMPSELTYSALLNGYCKVSMLGPALDLMVDLK----SRGI 360
Query: 570 AVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+++ + L+ F Q G + +++ M + + D + Y +
Sbjct: 361 TINKTMCTILIDGFCQVGEISKAKQILKSMLEDGIDPDVVTYSA 404
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 116/294 (39%), Gaps = 36/294 (12%)
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
++ S + L+NGY K L++ +K + + T+C+ +ID Q+G + A
Sbjct: 325 VMPSELTYSALLNGYCKVSMLGPALDLMVDLKSRGITINK-TMCTILIDGFCQVGEISKA 383
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN------LSCE 453
IL M G D TY +L+ ++ E + +L +M+KS ++ N L C
Sbjct: 384 KQILKSMLEDGIDPDVVTYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLIC- 442
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST-------IYKLN--- 503
+ +VA K L+ + +L++ E ++ + ++N
Sbjct: 443 YYCKAGYVKVALKHFVDIYRRGLVANPVIHNALLRAFYREGMITEAEHFRQYMSRMNISF 502
Query: 504 SSIYFFC-------KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEMYRDI 553
+S+ F C +GK++ +A +Y M P V T+ L+ G L +
Sbjct: 503 NSVSFNCIIDSYCHRGKIV-EAFSVYDDMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQF 561
Query: 554 TILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
DI AV + LLL + G + +++ M K N D
Sbjct: 562 MFCLLDIPS-------AVDEKTFNALLLGICKYGTLDEALDICEKMVKNNCLPD 608
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 109/267 (40%), Gaps = 29/267 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LING+ GK + + + ++ +T + +ID + ++ A +L +ME+
Sbjct: 265 LINGFFGEGKINHARCVFNHMLRQTLVPSVATY-TTMIDGYCRNRRIDKALSVLSEMEIT 323
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G TY +LL Y KV M A L+ ++ + N + ++ + F +V + S
Sbjct: 324 GVMPSELTYSALLNGYCKVSMLGPALDLMVDLKSRGITINKTMCTILIDGFCQVGEISK- 382
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
A+ +++ M E+ + ++ I C+ + + +I RMQ+
Sbjct: 383 -------------AKQILKSMLEDGIDPDVVTYSALINGMCRMAKMHETKEILSRMQKSG 429
Query: 530 IRP-----TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
I P T YY G+ + + + DI R G++A + ++ LL F
Sbjct: 430 ILPNDVLYTTLICYYCKAGYVKVALKH-----FVDIYRR---GLVA-NPVIHNALLRAFY 480
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ G YM + N+ + + +
Sbjct: 481 REGMITEAEHFRQYMSRMNISFNSVSF 507
Score = 38.9 bits (89), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 44/231 (19%), Positives = 94/231 (40%), Gaps = 19/231 (8%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
C+ ++ AL++ G + L + P+D TT LL + FR+AE +L++M+
Sbjct: 123 CNSILKALVEEGESKYVWLFLRESLARKFPLDVTTCNILLNSLCTNGEFRKAEDMLQKMK 182
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
CL + + ++ + K+A ++++M ++ + IY
Sbjct: 183 SCCLSNSATYNTILHWYVKKGRFKAAL---------------CVLEDMERDSIQADIYTY 227
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
N I C+ K A + +RM++ + P T+ L+ G ++ + R
Sbjct: 228 NIMIDKLCRIKRSARAFLLLKRMRKDDLTPDECTYNTLINGFFGEGKINHARCVFNHMLR 287
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
L S Y T++ + + ++ + V+ M+ + +L Y +
Sbjct: 288 Q----TLVPSVATYTTMIDGYCRNRRIDKALSVLSEMEITGVMPSELTYSA 334
>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 613
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 18/228 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VID L + G +E A D++ +M G + TY +L+ AY K+ F +L+ M
Sbjct: 221 VIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDK 280
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+V N + ++ E + K AE + ++M E + I+ S
Sbjct: 281 VVYNAATYTLLIEWYGSSG--------------KIAEAEKVFEKMLERGVEADIHVFTSI 326
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I + CK + A ++ + E + T+ L++G + +L + ++
Sbjct: 327 ISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNE----MQ 382
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
S L ++ ++ TL+ + + G + + + M+K+ D Y +
Sbjct: 383 SQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNT 430
>gi|222624963|gb|EEE59095.1| hypothetical protein OsJ_10946 [Oryza sativa Japonica Group]
Length = 318
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
++I+G H SE + IK ++ T + ID L ++G ++ A I ++M
Sbjct: 105 RIIHGLFAHKMGSEALRVFNEIKLRGYNVDAVTY-TTAIDGLCKMGCIDEARQIWNEMVD 163
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVSERFSEVADKS 467
G + Y SL+ Y K F A + +M L ++ +SC ++V+ +
Sbjct: 164 KGMEPNEYAYCSLVAYYCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCTH----- 218
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ D A + +EM ++ + N I CK + +A+++Y ++
Sbjct: 219 ----------GRVDEALGMFEEMVKKGIEHDVITYNILIQGLCKAGRLSEAIQVYEQLLS 268
Query: 528 MKIRPTVETFYYLV 541
+ P+V TF L+
Sbjct: 269 SGLEPSVSTFTPLI 282
>gi|15241779|ref|NP_198189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|9502152|gb|AAF88005.1| similar to a large family of Arabidopsis thaliana salt inducible
protein-like proteins; contains similarity to Pfam
family PF01535 (Domain of unknown function),
score=340.5, E=1.9e-98, N=2 [Arabidopsis thaliana]
gi|332006410|gb|AED93793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 23/149 (15%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
E +++L DME G DS TY +L++ + K K F E +++QMR+ L ++ V
Sbjct: 563 EKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAV 622
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIY-----FFCK 511
+ + V + D A L ++M L + N+ IY F K
Sbjct: 623 IDAYCSVGE--------------LDEALKLFKDM----GLHSKVNPNTVIYNILINAFSK 664
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYL 540
G AL + M+ +RP VET+ L
Sbjct: 665 LGNFGQALSLKEEMKMKMVRPNVETYNAL 693
>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
Length = 762
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 101/252 (40%), Gaps = 27/252 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-- 441
+ V+ G L +A D+M+ G D TY +L+ + +EAE +L++M
Sbjct: 368 TTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLA 427
Query: 442 RK--------SCLVQNLSCEMVVSERFS--------EVADKSASFTDTS-SLMDKSDL-- 482
R+ + LV ++E F VA ++T S L + D+
Sbjct: 428 RRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQA 487
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A L+ EM + NS I CK + A++ M ++P V T+ L+
Sbjct: 488 ANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLID 547
Query: 543 G-HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
S E+ R +L + I+ ++ Y L+ F G E +++ +M +
Sbjct: 548 ALCKSGELDRAHDLLQEMLDNGIKPTIVT-----YNVLMNGFCMSGRVEGGKKLLEWMLE 602
Query: 602 QNMYVDKLMYKS 613
+N++ + Y S
Sbjct: 603 KNIHPNATTYNS 614
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I+ L + G+L+ A + DM+ AG D TY +L+ A K A LL++M
Sbjct: 508 NSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLD 567
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ + + V+ F + + + + L++ M E+ N
Sbjct: 568 NGIKPTIVTYNVLMNGF--------------CMSGRVEGGKKLLEWMLEKNIHPNATTYN 613
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
S + +C G + +IY+ M + P T+ L+ GH
Sbjct: 614 SLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGH 654
>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
Length = 684
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 104/254 (40%), Gaps = 28/254 (11%)
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHS---FGESTLCSDVIDALIQLGFLEAAHDILDD 405
KLI + G+ S+ + +L + ++ + F +TL + + G L+AA ++
Sbjct: 83 KLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTL----VAGYCRYGQLDAARRLIAS 138
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD 465
M +A D+ TY ++ EA +LL M L + +V E
Sbjct: 139 MPVAP---DAYTYTPIIRGLCDRGRVGEALSLLDDM----LHRGCQPSVVTYTVLLEAVC 191
Query: 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
KS F ++D EMR + I N I C+ + DA + R+
Sbjct: 192 KSTGFGQAMEVLD----------EMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRL 241
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ 585
+P ++ ++ G + + + D+ L+ ++ +E + + ++ L+ F +
Sbjct: 242 SSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEM---MEKNCMP-NEVTFDMLVRFFCR 297
Query: 586 GGYFERVMEVIGYM 599
GG ER ++V+ M
Sbjct: 298 GGMVERAIQVLEQM 311
>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
Length = 550
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/234 (19%), Positives = 98/234 (41%), Gaps = 18/234 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDST-TYKSLLTAYYKVKMFREAEALLKQMRKS 444
++D L + + HD+L ++ G M + TY S+++ Y K +A ++ M +S
Sbjct: 259 LVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLES 318
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
N V+ + + D + A + +++ + +S
Sbjct: 319 GTRPNTVTYNVLINGYGKALDMES--------------AVRMYRQLILRRCPPDVVTFSS 364
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
I +C+ + DA++I++ M + I+P V TF ++ HS + R L + N+
Sbjct: 365 LIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIII--HSLCKQNRSAEALGFLRELNM 422
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKH 618
+ + A +Y ++ +GG E ++ M+++ + DK Y + H
Sbjct: 423 RADI-APQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGH 475
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/243 (19%), Positives = 92/243 (37%), Gaps = 30/243 (12%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
S ++ + +I + G++ + L + + ++ S V + G L+AA +
Sbjct: 110 SEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAVTL 169
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ-----------------MRKSC 445
L G ++ Y +LL ++A AL + ++ C
Sbjct: 170 LTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVC 229
Query: 446 LVQNLSCEMVVSERFSEVADKSASFT-----DTSSLMDKSDLAESLIQEM-REEAALSTI 499
V N + + ER +E + T D + + L++ + R+ + +
Sbjct: 230 RVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNV 289
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH-------SSLEMYRD 552
S I +CK + DAL +Y M E RP T+ L+ G+ S++ MYR
Sbjct: 290 VTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQ 349
Query: 553 ITI 555
+ +
Sbjct: 350 LIL 352
>gi|21537126|gb|AAM61467.1| unknown [Arabidopsis thaliana]
Length = 766
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 23/149 (15%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
E +++L DME G DS TY +L++ + K K F E +++QMR+ L ++ V
Sbjct: 563 EKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAV 622
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIY-----FFCK 511
+ + V + D A L ++M L + N+ IY F K
Sbjct: 623 IDAYCSVGE--------------LDEALKLFKDM----GLHSKVNPNTVIYNILINAFSK 664
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYL 540
G AL + M+ +RP VET+ L
Sbjct: 665 LGNFGQALSLKEEMKMKMVRPNVETYNAL 693
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 114/282 (40%), Gaps = 55/282 (19%)
Query: 305 LRCGL---KLQIMPELLEKDSILKMEG-KQELVLFR--NGKLLHSNRAMAKLINGYKKHG 358
LR GL +++ E+L+K+S+ ++VL G+LL + +A LI+ + HG
Sbjct: 196 LRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWKGRLLTEEKIIA-LISRFSSHG 254
Query: 359 KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTY 418
+ WL I S+LC + AA DIL D+ P+++ +
Sbjct: 255 VSPNSVWLTRFI---------SSLCKN--------ARANAAWDILSDLMKNKTPLEAPPF 297
Query: 419 KSLLTAYYK-VKMFREAEALLK----QMRKSC-----LVQNLSCEMVVSERFSEVADKSA 468
+LL+ + + + R + +LK ++R L+ LS V E
Sbjct: 298 NALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLSKSRRVDEALEVFEQMRG 357
Query: 469 SFTDTSSLMDKSDL-----------------AESLIQEMR-EEAALSTIYKLNSSIYFFC 510
TD +++ + AE L+ M+ EE + N I +C
Sbjct: 358 KRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYC 417
Query: 511 KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEM 549
+ + A ++ RM+E +I+P V T +V G H L M
Sbjct: 418 RAVKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNM 459
>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
Length = 567
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 111/285 (38%), Gaps = 45/285 (15%)
Query: 366 LLLSIKKEHHSFGESTLCSDVID---------------ALIQLGFLEAAHDILDDMELAG 410
LLL + +EH S + ++ID L + LE A +L M+ G
Sbjct: 13 LLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMG 72
Query: 411 HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLSCEMVV-----SER----- 459
D Y +L++ Y K K F +A L +M K+ CL ++ +V +ER
Sbjct: 73 CVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAV 132
Query: 460 --FSEVADKSAS--------FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFF 509
E+ DK S + K D A+ +++EM + NS I
Sbjct: 133 KLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGL 192
Query: 510 CKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-HSSLEMYRDITILWGDIKRNIESGV 568
CK + +A K RM + P V ++ ++ G S ++ +L R V
Sbjct: 193 CKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDV 249
Query: 569 LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ Y +L+ F +GG ER M ++ M K + + Y S
Sbjct: 250 VT-----YSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNS 289
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 62/158 (39%), Gaps = 14/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ VI+ L + G L++A +LD M G D TY SL+ + K A LL M K
Sbjct: 218 TTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLK 277
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
L C R + VA S + AE ++ EM + N
Sbjct: 278 ------LGC------RPNMVA--YNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYN 323
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+ I CK + + A ++ RM E P ++ L+
Sbjct: 324 ACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLI 361
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 17/202 (8%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ LI+G+ K G+ LL S+ K + ++ AL +LG + A D+L +ME
Sbjct: 253 SSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAY-NSLLGALHRLGHIGKAEDMLVEME 311
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSE--RFSEVA 464
G D +Y + + K + ++A+A+ +M + C S M++ + ++ +
Sbjct: 312 RRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLL 371
Query: 465 D---KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
D K F + +L K + E+ ++ N + CK + I AL+I
Sbjct: 372 DGLCKGGRFDEACALFSKV---------LDEKICEPDVFFYNVMLDSHCKRRQIDKALQI 422
Query: 522 YRRMQEMKIRPTVETFYYLVYG 543
+++M E K V T+ LV+G
Sbjct: 423 HKQMLE-KNCCNVVTWNILVHG 443
>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 647
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
Query: 481 DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
D +S+ + +E + T+Y NS I F M+ + L ++RRM+E I P++ ++ +L
Sbjct: 161 DSVKSVFSKFKEMGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFL 220
Query: 541 VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
V G + + ++ +E+G + Y T++ + + G + E + M+
Sbjct: 221 VNGLVNSKFIESAERVF----EVMENGKIGPDVVTYNTMIKGYCEVGKTRKAFEKLKAME 276
Query: 601 KQNMYVDKLMY 611
+N+ DK+ Y
Sbjct: 277 LRNVAPDKITY 287
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 109/265 (41%), Gaps = 28/265 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI G+ + GK + +W++ I ++ + + + +I + G ++ A +LD M +A
Sbjct: 98 LIRGFCRIGKTKKATWVM-EILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVA 156
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREA-EALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
D TY ++L ++A E L +Q++K C ++ +++ E K +
Sbjct: 157 P---DVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILI-----EATCKES 208
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
L+D EMR + + + N I CK + +A+K M
Sbjct: 209 GVGQAMKLLD----------EMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSY 258
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFL-QG 586
+P V T ++ S + D L D +++ V+ + +L+NFL +
Sbjct: 259 GCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFN------ILINFLCRQ 312
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMY 611
G R ++++ M + L Y
Sbjct: 313 GLLGRAIDILEKMPMHGCTPNSLSY 337
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 84/417 (20%), Positives = 160/417 (38%), Gaps = 71/417 (17%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
PD + ++ R G + K +ME++ Q+G V D + +L + C+ E+
Sbjct: 90 PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGY---CKSGEIDNA 146
Query: 235 KCYIDQLST-PFAHHYQQFYESLLSLHFKFDDIDAAGEL-----ILDMNRYREPLPNPKL 288
+D+++ P Y +L +G+L +LD +E P+
Sbjct: 147 LQVLDRMNVAPDVVTYNTILRTLCD----------SGKLKQAMEVLDRQLQKECYPDV-- 194
Query: 289 RQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELV--LFRNGKLLHSNRA 346
LI G ++++ E+ K S + L+ + + G+L +
Sbjct: 195 ---ITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEA--- 248
Query: 347 MAKLINGYKKHGKNSEL---SWLLLSIKKEHHSFGESTLCSD---------------VID 388
K +N +G + + +L S+ L SD +I+
Sbjct: 249 -IKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILIN 307
Query: 389 ALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK-VKMFREAEALLKQMRKSC-- 445
L + G L A DIL+ M + G +S +Y LL + K KM R E L + + C
Sbjct: 308 FLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYP 367
Query: 446 -----------LVQNLSCEMVVSERFSEVADKSAS--------FTDTSSLMDKSDLAESL 486
L ++ ++ V E ++++ K S D S + K++ A L
Sbjct: 368 DIVTYNTLLTALCKDGKVDVAV-EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKL 426
Query: 487 IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ EMR + I +S + + + +A+K + ++ + IRP T+ ++ G
Sbjct: 427 LDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLG 483
>gi|359477372|ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containing protein At3g23020
[Vitis vinifera]
Length = 881
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 20/172 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+A +G + A + ++ + AG PM++ Y SL+ Y KV EA+ K ++ S
Sbjct: 644 LINAFADVGNVREAVNYVNALRNAGLPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASE 703
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE--------------------S 485
+ ++ + + +SE + + SL K D E
Sbjct: 704 VGPDVYSSNCMIDLYSERSMVKQAEEIFESLKRKGDANEFSFAMMLCMYKRIGKLKEAFQ 763
Query: 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
++Q+MRE ++ + N+ + F+ DA+ ++ M E I+P TF
Sbjct: 764 IVQKMRELGLVTDLLSYNNVLGFYAMDGRFKDAVGTFKEMIEAAIQPDDCTF 815
>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
Length = 436
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID + L AA D+ D M + + TY +L+ K + A +L M K
Sbjct: 223 NTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVK 282
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ N++ + + F +V + D A L+++M + T+ N
Sbjct: 283 KGVTPNVATYSCLIDGFCKV--------------RRVDEAHKLLEQMVTQGIAPTVVTYN 328
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+ C+ + DA K++R M + + PTV T+ L+
Sbjct: 329 ILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLL 366
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 93/237 (39%), Gaps = 22/237 (9%)
Query: 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437
G +T + V D + G LE ++ M AG+ + ++ Y L++ KV F EA L
Sbjct: 9 GAATF-NTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKL 67
Query: 438 LKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
L MR +RF A ++ + +++ + A LI++M A
Sbjct: 68 LHTMR--------------LKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPD 113
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ + CK K I DAL M I+P + +++ G E + +L+
Sbjct: 114 AL-TYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLF 172
Query: 558 GD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+K+ I V+ Y TL+ + E E+ M + ++ Y +
Sbjct: 173 EKMVKQRINPNVVT-----YNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNT 224
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 14/160 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID L + G ++AA ++LD M G + TY L+ + KV+ EA LL+QM
Sbjct: 258 TTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQM-- 315
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
V++ + ++ DK + A L + M + T+ N
Sbjct: 316 ------------VTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYN 363
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ + C K + A ++Y M P T+ L +G
Sbjct: 364 TLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWG 403
>gi|15233137|ref|NP_191711.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183498|sp|Q9M316.1|PP292_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g61520, mitochondrial; Flags: Precursor
gi|6850843|emb|CAB71082.1| putative protein [Arabidopsis thaliana]
gi|332646696|gb|AEE80217.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 766
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 23/149 (15%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
E +++L DME G DS TY +L++ + K K F E +++QMR+ L ++ V
Sbjct: 563 EKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAV 622
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIY-----FFCK 511
+ + V + D A L ++M L + N+ IY F K
Sbjct: 623 IDAYCSVGE--------------LDEALKLFKDM----GLHSKVNPNTVIYNILINAFSK 664
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYL 540
G AL + M+ +RP VET+ L
Sbjct: 665 LGNFGQALSLKEEMKMKMVRPNVETYNAL 693
>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900 [Vitis vinifera]
Length = 900
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 100/250 (40%), Gaps = 25/250 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S+++D L + G + +A D+++ ++ G Y +L+ + K EAE+L M
Sbjct: 324 SNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGH 383
Query: 444 SCLVQNLSCEMVVSERF----------------SEVADKSASFTDTSSL-----MDKSDL 482
L N ++ + F +EV K+ + +S + + K
Sbjct: 384 KGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRA 443
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A+SL EM + S I +CK + +A ++Y M I P TF L+
Sbjct: 444 AKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALIS 503
Query: 543 GHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602
G + L+G++ +E V+ + Y L+ + G R E++ M ++
Sbjct: 504 GLCHANRMAEANKLFGEM---VEWNVIP-NEVTYNVLIEGHCKEGNTVRAFELLDEMVEK 559
Query: 603 NMYVDKLMYK 612
+ D Y+
Sbjct: 560 GLVPDTYTYR 569
Score = 42.7 bits (99), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 15/195 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LIN K GK E L ++ + F S +ID+ + G L+ A L M
Sbjct: 361 LINSMCKDGKLDEAESLFNNMGHKGL-FPNDVTYSILIDSFCKRGKLDVALHFLGKMTEV 419
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G Y SL++ + K+ R A++L +M + L N+ + + + + +
Sbjct: 420 GIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNA 479
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
F L EM + Y + I C + +A K++ M E
Sbjct: 480 F--------------RLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWN 525
Query: 530 IRPTVETFYYLVYGH 544
+ P T+ L+ GH
Sbjct: 526 VIPNEVTYNVLIEGH 540
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 104/252 (41%), Gaps = 26/252 (10%)
Query: 367 LLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423
++ + K+ H G ++ L + +IDA + G L+ A + D M G + TY +L+
Sbjct: 654 IIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALIN 713
Query: 424 AYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLA 483
K+ + +AE L ++M S + N + A F D L + ++
Sbjct: 714 GLCKIGLMDKAELLCREMLASNSLPN--------------QNTYACFLDY--LTSEGNIE 757
Query: 484 ESL-IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
+++ + ++ E L+ N I FCK I +A ++ M + I P ++ ++Y
Sbjct: 758 KAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIY 817
Query: 543 GHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
+ ++ LW + R + +A Y L+ G + E+ M +
Sbjct: 818 EYCRRGDLKEAIKLWESMLNRGVNPDTVA-----YNFLIYGCCVTGELTKAFELRDDMMR 872
Query: 602 QNMYVDKLMYKS 613
+ + ++ Y S
Sbjct: 873 RGVKPNRATYNS 884
>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
Length = 550
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 96/483 (19%), Positives = 183/483 (37%), Gaps = 85/483 (17%)
Query: 104 ARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLS 163
R+Q+P A M+GR +P S+ + + ++K SNF + VF +
Sbjct: 93 VRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIK--------SNFFEKAWRVF---N 141
Query: 164 AEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHE 223
K N +K D F +++ C G KG ++ M + G+ + ++++ + +
Sbjct: 142 ETKGN----VKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGL---SPNVVVYTTLID 194
Query: 224 MNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPL 283
C+ ++++ K ++ Q Y L++ FK EL
Sbjct: 195 GCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELY---------- 244
Query: 284 PNPKLRQDAQKPYLISIGSPNLRC------GLKLQIMPELLEKDSILKMEGKQELV--LF 335
K++ P + + S RC ++ E+ E+ + L+ L
Sbjct: 245 --EKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLC 302
Query: 336 RNGKLLHSNRAMAK---------------LINGYKKHGKNSELSWLLLSIKKEHHSFGES 380
+ ++L + R M + LI+GY G + S L +K S +
Sbjct: 303 QERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLA 362
Query: 381 TLCSDVIDALIQLGFLEAAH-----DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAE 435
T ++ GF EA + D++ +ME G TY L+ A + +A
Sbjct: 363 TY------NILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAF 416
Query: 436 ALLKQMRKSCLVQNLSCEMVVSERFSEVAD-KSAS--FTDTSSL-MDKSDL--------- 482
+ M K+ LV ++ V+ V D K AS F + + +D+
Sbjct: 417 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGY 476
Query: 483 --------AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
A L++EM E + + NS+I CK + +A + + M E+ ++P++
Sbjct: 477 CKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIELGLKPSI 536
Query: 535 ETF 537
+
Sbjct: 537 SIW 539
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 106/264 (40%), Gaps = 31/264 (11%)
Query: 369 SIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV 428
++K + +SFG +I ++G+L+ ++L ME G + Y +L+ K
Sbjct: 146 NVKLDVYSFG------IMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKN 199
Query: 429 KMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS----------------FTD 472
+ L +M + +V N V+ F ++ K +T
Sbjct: 200 GDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTY 259
Query: 473 TSSLM-----DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
S + K + A L EMRE + N+ I C+ + + +A ++ RM+
Sbjct: 260 NSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKR 319
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
+ P + ++ L+ G+ S+ + L+ +K + +S LA Y L+ F +
Sbjct: 320 DGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLAT----YNILIAGFSEAK 375
Query: 588 YFERVMEVIGYMKKQNMYVDKLMY 611
V +++ M+ + + K+ Y
Sbjct: 376 NSAGVTDMVREMEARGLSPSKVTY 399
>gi|22327132|ref|NP_680234.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174514|sp|Q9LKU8.1|PP401_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g28460
gi|9502149|gb|AAF88002.1| contains similarity to Pfam family PF01535 (Domain of unknown
function), score=340.5, E=1.9e-98, N=2 [Arabidopsis
thaliana]
gi|15529206|gb|AAK97697.1| AT5g28460/F21B23_120 [Arabidopsis thaliana]
gi|27363272|gb|AAO11555.1| At5g28460/F21B23_120 [Arabidopsis thaliana]
gi|332006418|gb|AED93801.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 766
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 23/149 (15%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
E +++L DME G DS TY +L++ + K K F E +++QMR+ L ++ V
Sbjct: 563 EKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAV 622
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIY-----FFCK 511
+ + V + D A L ++M L + N+ IY F K
Sbjct: 623 IDAYCSVGE--------------LDEALKLFKDM----GLHSKVNPNTVIYNILINAFSK 664
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYL 540
G AL + M+ +RP VET+ L
Sbjct: 665 LGNFGQALSLKEEMKMKMVRPNVETYNAL 693
>gi|2827705|emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
Length = 598
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 94/223 (42%), Gaps = 19/223 (8%)
Query: 326 MEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD 385
ME K LV L++GY GK ++ LL +++ F + C
Sbjct: 245 MEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRR--RGFEPNANCYT 302
Query: 386 V-IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
V I AL ++ +E A + +ME D TY +L++ + K + +L M K
Sbjct: 303 VLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKK 362
Query: 445 CLVQNLSCEMVVSERFSEVA-DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
L+ + M + VA +K SF + LM+K MR+ I N
Sbjct: 363 GLMPSELTYMHIM-----VAHEKKESFEECLELMEK----------MRQIEYHPDIGIYN 407
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546
I CK + +A++++ M+E + P V+TF ++ G +S
Sbjct: 408 VVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLAS 450
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 127/316 (40%), Gaps = 56/316 (17%)
Query: 253 YESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGS-PNLRCG--- 308
+ L+ H K DID+A E++ +M + PN LI+ + N CG
Sbjct: 203 FNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPN-----------LITYSTLINGLCGSGR 251
Query: 309 LK--LQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWL 366
LK +++ E++ KD IL LING+ HG+ + +
Sbjct: 252 LKEAIELFEEMVSKDQILP-----------------DALTYNALINGFC-HGEKVDRALK 293
Query: 367 LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426
++ K++ S +++ + G LE A ++ D+M+ G D+ Y +L+ +
Sbjct: 294 IMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFC 353
Query: 427 KVKMFREAEALLKQMRKS-CLVQNLSCEMVVS-----ERFSEVA-------------DKS 467
+ EA LLK MR++ C ++ +++ RF E +K+
Sbjct: 354 RAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKA 413
Query: 468 ASFTDTSSLMDKSDL--AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+ +SL + +L A L+ M L N + C+ +GDA+ +
Sbjct: 414 SYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGL 473
Query: 526 QEMKIRPTVETFYYLV 541
E+ +P ++ LV
Sbjct: 474 LELGFKPEPNSWALLV 489
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/249 (20%), Positives = 108/249 (43%), Gaps = 22/249 (8%)
Query: 355 KKHGKNSELSW---LLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGH 411
K H KN ++ ++ +KK H S+ S +I+ L G L+ A ++ ++M
Sbjct: 208 KHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQ 267
Query: 412 PM-DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASF 470
+ D+ TY +L+ + + A +++ M+K+ N+ +S + + F
Sbjct: 268 ILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVF-------NYSALMN---GF 317
Query: 471 TDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI 530
L + A+ + EM+ + I FFC+ + +A+++ + M+E K
Sbjct: 318 CKEGRLEE----AKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKC 373
Query: 531 RPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFE 590
R TF ++ G + + G ++R GV +++ Y +L + + G +
Sbjct: 374 RADTVTFNVILGGLCREGRFEEAR---GMLERLPYEGVY-LNKASYRIVLNSLCREGELQ 429
Query: 591 RVMEVIGYM 599
+ +++G M
Sbjct: 430 KATQLVGLM 438
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 23/230 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI L + G L A + M A HP D TY L+ K + R+A +L++M +
Sbjct: 11 VIGGLCRAGRLRHALGVYRQMNDA-HPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSAR 69
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
V + + VV + L D+ D A L++EM + ++
Sbjct: 70 HVPDNTTLTVVVQSLC--------------LGDRVDDARELVEEMLHRGMAANAITYSAL 115
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
+ CK + + +A+ + M E PTV T+ ++ G R + G +++ +
Sbjct: 116 VDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRA---RRVDEAHGFMEQMVA 172
Query: 566 SGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G D+ Y L+ F + R +E++G + ++ D + Y +
Sbjct: 173 EG---CHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYST 219
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 24/181 (13%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S VID L + G L A DI ++M A P + TY SL+ Y + EA LL +M
Sbjct: 218 STVIDGLCKAGRLRDAVDIFEEMSCA--PT-AITYNSLIGGYCRAGDMDEAIRLLGKMVD 274
Query: 444 SCLVQNLSCEMVVSERFSE--------------VADK-SASFTDTSSLMD------KSDL 482
++ + F + VA+K S +SL+D + +
Sbjct: 275 DKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMED 334
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A L++E+ TIY N + +CK + A ++ + P T+ LV
Sbjct: 335 ALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVA 394
Query: 543 G 543
G
Sbjct: 395 G 395
>gi|410110063|gb|AFV61111.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
barbata]
Length = 364
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE 458
A I ++ +G D Y +++ + K K+FREA +L+ +M+ + ++ N + +
Sbjct: 6 AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYSTLLT 65
Query: 459 RFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDA 518
+ E + F + A S+ EMRE L + N I + + M +A
Sbjct: 66 MYVE----NKKFLE----------ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEA 111
Query: 519 LKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYE 577
K++ M++M I P V ++ L+ + E++ + L+ ++R NIE V+ Y
Sbjct: 112 DKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT-----YN 166
Query: 578 TLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++++ + + E+ +I M+ + + + + Y +
Sbjct: 167 SMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYST 202
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 29/169 (17%)
Query: 298 ISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKH 357
ISI S R G P+L+ ++++ + GK +L FR + L S A ++
Sbjct: 7 ISIFSRLKRSGFT----PDLVAYNAMINVFGKAKL--FREARSLISEMKXAGVM------ 54
Query: 358 GKNSELSWLLLSIKKEHHSFGES----------------TLCSDVIDALIQLGFLEAAHD 401
N+ LL++ E+ F E+ T C+ +ID QLG + A
Sbjct: 55 -PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 113
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450
+ M G + +Y +LL Y ++F EA L + M++ + QN+
Sbjct: 114 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNV 162
>gi|357444861|ref|XP_003592708.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355481756|gb|AES62959.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 1430
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 14/160 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S I L+ + ++ A I D+ GH D + L+ KV F EAE L ++ K
Sbjct: 570 SAAIGGLVNIQEVDHAMKIFKDLWSHGHCPDVVCFNVLIRGLCKVNRFTEAEDLFHELVK 629
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ LS +V F + K+ + D A + + M +E + ++
Sbjct: 630 ----RGLSPSVVTYNLFIDCWCKNGNV----------DKAMAHLFRMTKEDKVPSVVTYT 675
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ + FCK + DA+ +++ M++ P TF L+YG
Sbjct: 676 TLVDGFCKEERPDDAILLFKEMEKNGCPPNQITFMALIYG 715
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 13/135 (9%)
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477
Y +LLT Y + EA L++ M +S + S E + F V K F + +S
Sbjct: 374 YNALLTCYVNDGLMDEAYRLIRMMIQSKSSTD-SDENRMDVFFKTV--KRMVFPNITSFS 430
Query: 478 ---------DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
D+ DLA SL +MR TI N+ I CK + + ++ R M+E+
Sbjct: 431 IVIDGFLKNDQLDLALSLFNDMRRFVDKPTILIYNNLIDSLCKSNRLEKSYELLREMKEL 490
Query: 529 KIRPTVETFYYLVYG 543
I PT T Y +YG
Sbjct: 491 GIEPTHFT-YNSIYG 504
>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
Length = 799
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 109/290 (37%), Gaps = 38/290 (13%)
Query: 350 LINGYKKHGKNSEL-SWLLLSIKK----EHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404
LI+GY G SE+ S+L L ++ +HH F + A + G ++ A DI +
Sbjct: 345 LIHGYATKGALSEMHSFLDLMVENGLSPDHHIF------NIFFSAYAKCGMIDKAMDIFN 398
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-------------- 450
M G + Y +L+ A K+ +AE QM + N+
Sbjct: 399 KMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVD 458
Query: 451 ---SCEMVVSERFSEVADKSASFTDT--SSLMDKSDLAES--LIQEMREEAALSTIYKLN 503
E +V E + +A F +T +L + + E LI M +
Sbjct: 459 KWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYT 518
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKR 562
I +C +A K++ M + + PT T+ L++G+ S D L+ + +++
Sbjct: 519 PLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRK 578
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
+ GV+ Y T+L Q F E+ M D Y
Sbjct: 579 GVTPGVVT-----YNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYN 623
>gi|242094172|ref|XP_002437576.1| hypothetical protein SORBIDRAFT_10g029640 [Sorghum bicolor]
gi|241915799|gb|EER88943.1| hypothetical protein SORBIDRAFT_10g029640 [Sorghum bicolor]
Length = 429
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 22/221 (9%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++ A + G LE + +L +M G +D+ Y L+ Y M+++A L+ +M
Sbjct: 86 LLGAYARAGRLEDSWWVLGEMRRRGIRLDTAGYSMLVRLYRDNGMWKKAIDLVMEM---- 141
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
Q + E+ V + +S + D +F L D A + +MR E I N+
Sbjct: 142 --QEVGVELDV-KIYSGLID---TFGKYGQLAD----ARRVFDKMRAEGIKPDISTWNAL 191
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN-- 563
I + C+ + AL+ + MQE + P + F ++ + +I L+ +K
Sbjct: 192 IQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMKNRGF 251
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
ESG +Y L+ + Q G+F E I ++ +NM
Sbjct: 252 KESGA------VYAVLVDIYGQYGHFRDARECIAALRAENM 286
>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 608
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 69/390 (17%), Positives = 155/390 (39%), Gaps = 48/390 (12%)
Query: 158 VFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIII 217
+FL +S + NG +KPD++++N +++A G+ + I + M TG +
Sbjct: 112 IFLLISKVEENG---MKPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNT 168
Query: 218 LAQIHEMNCQRDELKKFK--CYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILD 275
L + + + +E K +D P Y + S +I+ A ++
Sbjct: 169 LIKGYGNAGKPEEGLKMLHLMSLDGSVKPNDRTYNILVRAWCSKK----NIEEAWNVL-- 222
Query: 276 MNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLF 335
K+ +P +++ N+ Q L +D IL+M+ +
Sbjct: 223 ----------HKMVASGIQPDVVTY---NILARAYAQKGETLRAEDLILEMQYE------ 263
Query: 336 RNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF 395
K+ + R ++NGY K G E + +K E + + +I + +
Sbjct: 264 ---KVAPNERTCGIIVNGYCKEGNMIEALRFVYRMK-ELGVHPNLVIFNSLIKGFLDITD 319
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+ + L ME G D T+ +++ A+ + + + + M K+ + ++ +
Sbjct: 320 TDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSI 379
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+++ + + ++ AES++ M + + + I +C +
Sbjct: 380 LAKGYVRAGE--------------TENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKM 425
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHS 545
+A +Y +M E+ I P ++TF L++G++
Sbjct: 426 ENAKMVYEKMCEIGISPNLKTFETLIWGYA 455
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 341 LHSNR-AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
H N+ + LING K G+ S LL + + + + +ID++ ++ + A
Sbjct: 173 FHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQ-PNVVMYNTIIDSMCKVKLVNEA 231
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSE- 458
D+ +M G D TY +L++ + V ++A L +M + N+ ++ +
Sbjct: 232 FDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDG 291
Query: 459 -----RFSEVAD----------KSASFTDTSSLMDKSDL------AESLIQEMREEAALS 497
R E + K FT +SLMD+ L A+ + + +
Sbjct: 292 FCKERRLKEAKNVLAMMMKQGIKPDVFT-YNSLMDRYCLVKEVNKAKHIFNTISQRGVNP 350
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
I+ + I+ FCK K + +A+ +++ M I P V T+ L+ G
Sbjct: 351 NIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDG 396
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 89/217 (41%), Gaps = 18/217 (8%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+ A I + + G + +Y ++ + K+K EA L K+M C +
Sbjct: 333 VNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMH---------CNNI 383
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+ + + S D + K A L+ EM + NS + CK +
Sbjct: 384 IPDVVT-----YNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQV 438
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL 575
A+ + +M++ I+P + T+ LV G D I++ D+ ++ +L V ++
Sbjct: 439 DKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLL--VKGYILDV--NI 494
Query: 576 YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
Y ++ F G F+ ++++ M++ + + Y+
Sbjct: 495 YTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYE 531
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID L +LG + A ++D+M G P D TY S+L A K +A ALL +M+
Sbjct: 391 NSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKD 450
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ ++ + + K+ D A + +++ + + +
Sbjct: 451 EGIQPDICTYTTLVDGLC----KNGRLED----------ARIVFEDLLVKGYILDVNIYT 496
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+ I FC + ++L + +M+E P T+ ++
Sbjct: 497 AMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIII 534
>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
Length = 600
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 109/291 (37%), Gaps = 57/291 (19%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
VID L++ G +E ++M + TTY ++ K +M +A + +QM +K
Sbjct: 149 VIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKG 208
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
C+ ++ ++ D S K D A L+ M + T S
Sbjct: 209 CVPDTITYTTLI---------------DGFSKASKMDEARKLLDVMLTKGPEPTAVTYGS 253
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF-----YYLVYGHSSLEMYR-------- 551
++ FCK MI +A ++ +M+E P + F YYL G + E Y+
Sbjct: 254 IVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAE-EAYQVLTEMTAR 312
Query: 552 ----DITILWGDIKRNIESGVLAVSRDL---------------YETLLLNFLQGGYFERV 592
D+ + I +G + +R + Y T++ NF + G E
Sbjct: 313 GCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAA 372
Query: 593 MEVIGYMKKQNMYVDKLMYKS--------EFLKHHKHLYRRLKVSNARTEA 635
E++ M K + D Y S E + +Y R+ S + A
Sbjct: 373 GEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNA 423
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 76/370 (20%), Positives = 137/370 (37%), Gaps = 56/370 (15%)
Query: 199 IMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLS 258
+ E M Q G V D + L + DE +K +D + T Y S++
Sbjct: 200 VFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKL---LDVMLTKGPEPTAVTYGSIVH 256
Query: 259 LHFKFDDIDAAGELILDMNRYREPLPNPKLRQ-DAQKPYLISIGSPNLRCGLKLQIMPEL 317
K D I+ A E+I M RE P L + Y +S G R Q++ E+
Sbjct: 257 GFCKLDMINEAKEVIAQM---RERGCEPGLFIFTSLLSYYLSKG----RAEEAYQVLTEM 309
Query: 318 LEKDSILKMEGKQELV--LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHH 375
+ + L+ LF G++ + +I +K L++
Sbjct: 310 TARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMI---EKGCAPDALTY---------- 356
Query: 376 SFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAE 435
+I ++G +EAA +IL+ M +G D Y SL+ Y K++ +A
Sbjct: 357 --------GTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 408
Query: 436 ALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLI-------- 487
+ +M S + N V+ + +F+ +++K ++ +L+
Sbjct: 409 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDG 468
Query: 488 --------------QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT 533
QEM + + + S IY K I +A K+ M ++ + P
Sbjct: 469 LGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPD 528
Query: 534 VETFYYLVYG 543
V+ + L+ G
Sbjct: 529 VQAYSALITG 538
>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
Length = 1874
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 27/194 (13%)
Query: 369 SIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV 428
+I + +SF + ++ + L+ A D +++M+ G TY SL+ AY
Sbjct: 1585 TIPPDENSF------NTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCME 1638
Query: 429 KMFREAEALLKQMRKSCLVQNLSCEMVV------SERFSEVADKSASFTDTSSLMDKS-- 480
K F+ ALL +MRK N+ ++ + R E D + D S
Sbjct: 1639 KDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFY 1698
Query: 481 -------------DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ A S+++EMR + N+ I C +ALK+ +M+E
Sbjct: 1699 NSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEE 1758
Query: 528 MKIRPTVETFYYLV 541
P ++T+ L+
Sbjct: 1759 QSCNPDIKTYTPLL 1772
>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12775, mitochondrial-like [Glycine max]
Length = 750
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 128/300 (42%), Gaps = 35/300 (11%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSF-GESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
LING K G+ ++ LL K E HS + + + +I +L + L A D+ +M +
Sbjct: 174 LINGLCKTGETKAVARLLR--KLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIV 231
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G + TY +L+ + + +EA +LL +M+ ++N++ ++ + K
Sbjct: 232 KGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMK----LKNINPDVCTFNTLIDALGKEG 287
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI--YFFCKGKMIGDALKIYRRMQ 526
K A+ ++ M + + NS I YFF + +A ++ M
Sbjct: 288 ----------KMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNK--VKNAKYVFYSMA 335
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQ 585
+ + P V T+ ++ G +M + L+ ++K +N+ ++ Y +L+ +
Sbjct: 336 QSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVT-----YTSLIDGLCK 390
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMY--------KSEFLKHHKHLYRRLKVSNARTEAQS 637
+ ER + + MK+Q + D Y K L++ K ++RL V Q+
Sbjct: 391 NHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQT 450
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
L+ A +L M A D TY +L+ Y+ V + A+ + M + + N+ C +
Sbjct: 522 LKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTI 581
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+ + + D A SL +EM+ + I S I CK +
Sbjct: 582 MIDGLCK--------------KKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHL 627
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYG 543
A+ + + M+E I+P V ++ L+ G
Sbjct: 628 ERAIALLKEMKEHGIQPDVYSYTILLDG 655
>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
Length = 816
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 21/234 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKS 444
+IDA + G LE A D++ M GH D TY +++ K EA L +M R
Sbjct: 399 MIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLG 458
Query: 445 CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
C S ++ + S D + K D A L++ M ++ + + ++
Sbjct: 459 CTPNRRSHNTII------LGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYST 512
Query: 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLEMYRDITILWGDIK 561
I C + DA + M + + +PTV T L++G ++ R++ +
Sbjct: 513 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV------LD 566
Query: 562 RNIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ SG S D+ Y TL+ + G ER E++ M + + + + Y +
Sbjct: 567 AMVSSG---QSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTA 617
Score = 45.8 bits (107), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 104/285 (36%), Gaps = 38/285 (13%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMEL 408
LI+G K GK ++ L K H ST+ + +I L + A ++ DM
Sbjct: 329 LIDGLAKAGKLNDARNLFQ--KLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNR 386
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G P TY ++ A K M EA L+K+M + V D
Sbjct: 387 RGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIED----------------GHVPDVVT 430
Query: 469 SFTDTSSLMDKSDLAESLI--QEMREEAALSTIYKLNSSIYFFC----------KGKMIG 516
T L S + E+L+ EM N+ I C +GK+
Sbjct: 431 YNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKL-D 489
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDL 575
+A ++ +RM + P V T+ L+ G S+ D L D +KR + V+
Sbjct: 490 EAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVT----- 544
Query: 576 YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
TL+ + G + EV+ M D + Y + H +
Sbjct: 545 QNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCR 589
>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 549
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 17/156 (10%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+ A D++ +ME G TY SL+ AY K F+ A+L +MR N+ +
Sbjct: 280 MNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNVITYTI 339
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
V + ++ A + ++R + NS IY + +
Sbjct: 340 VMHALGKAG--------------RTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRL 385
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYG---HSSLE 548
DA + +M+ +RPTV TF L+ HS E
Sbjct: 386 EDANSVVDKMRMTGVRPTVATFNTLISAACDHSQAE 421
>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 920
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 17/198 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
V+D +G+ E A IL+ ++ G + TY L+ Y K EAE ++K+M++
Sbjct: 259 VMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKE-- 316
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ ++VV EVA + + D A + EMR+ ++ N+
Sbjct: 317 -----TGDIVV----DEVA--YGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTM 365
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I CK + + K+ + M+++ +RP ++ L+ G+ R + + RN
Sbjct: 366 INGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRN-- 423
Query: 566 SGVLAVSRDLYETLLLNF 583
LA + Y TLL F
Sbjct: 424 --GLAATTLTYNTLLKGF 439
>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 16/162 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAG-HPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
+ +++ L + G + A ++++M+ AG HP D+ TY +L+ AYYK +A LL++M
Sbjct: 359 NTIVNGLCKAGNILQAVKLMEEMKEAGLHP-DTITYTTLMDAYYKTGEMVKARELLREM- 416
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
L + L +V S D E L++ M E+ +
Sbjct: 417 ---LDRGLQPTVVTFNVLMNGLCMSGKLED----------GERLLKWMLEKGIMPNAATY 463
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
NS + +C + + +IYR M + P T+ L+ GH
Sbjct: 464 NSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGH 505
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 20/164 (12%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++++L +LG + AH +L ME G D +Y +++ Y V ++ L+K+M+
Sbjct: 116 LMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKG 175
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL---AESLIQEMREEAALSTIYKL 502
L NL +++ L+ KS E +++EM +
Sbjct: 176 LKPNLY-----------------TYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIY 218
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546
+ I FCK A K++ M+ +I P F L+ G S
Sbjct: 219 TTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSG 262
>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1833
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 21/167 (12%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
L+ A D +++M+ G TY SL+ AY K F+ ALL +MRK N+ +
Sbjct: 1565 LKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTI 1624
Query: 456 V------SERFSEVADKSASFTDTSSLMDKS---------------DLAESLIQEMREEA 494
+ + R E D + D S + A S+++EMR
Sbjct: 1625 LMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTG 1684
Query: 495 ALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+ N+ I C +ALK+ +M+E P ++T+ L+
Sbjct: 1685 IAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLL 1731
>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g20300, mitochondrial; Flags: Precursor
gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
contains multiple PPR PF|01535 repeats [Arabidopsis
thaliana]
gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 537
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 24/247 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S VIDAL + G + AHD+ DM +G ++ T+ +L+ + K + + QM+K
Sbjct: 294 SIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKK 353
Query: 444 ----------------SCLVQNLSCEM-VVSERFSEVADKSASFTDT--SSLMDKSDL-- 482
C +NL + V++ + + +AS +T + K D+
Sbjct: 354 LGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNG 413
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A + +M E N + F K LK+ + M + ++ P V T+ LV
Sbjct: 414 AHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVT 473
Query: 543 GHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602
+ + + L+ ++ +E L S LYE +L + G ++ E++ M ++
Sbjct: 474 MFCGMGHWNNAYKLFKEM---VEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQK 530
Query: 603 NMYVDKL 609
+ L
Sbjct: 531 GLVARPL 537
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 14/158 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID L +G L A D+L++ME G P + TY +++ A K EAE + QM
Sbjct: 448 LIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMD--- 504
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
++ S A + D + D A LI++M +E NS
Sbjct: 505 -----------AQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSI 553
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
+ +CK I A I M V T+ L+ G
Sbjct: 554 LTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLING 591
>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
Length = 410
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 92/231 (39%), Gaps = 22/231 (9%)
Query: 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE-AEALLKQM 441
C+ ++ Q G + A + D M G + TY +L+ Y+ V+ RE AL +M
Sbjct: 41 CTALVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTYTALINGYF-VRGHREMGFALFAEM 99
Query: 442 RKSCLVQNL-SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
R+ + NL + ++ E KSA L EM + + +
Sbjct: 100 RRDGVEPNLYTYNCLIGEWCRTGEFKSARL---------------LFDEMPVKGVVHNVV 144
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
N I C+ + DA++++ M+ IRP++ TF L+ G+ + + +
Sbjct: 145 SYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQM 204
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
K + L S Y L+ F + R + MK++ + K+ Y
Sbjct: 205 K----AAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTY 251
>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
lyrata]
gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
lyrata]
Length = 1305
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 341 LHSNRAMAK-LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCS--DVIDALIQLGFLE 397
SN +M LI Y ++GK L S +K +S + L S ++ + +LG+++
Sbjct: 657 FESNVSMCNSLIVMYSRNGK-------LESSRKVFNSMVDRNLSSWNSIVSSYTRLGYVD 709
Query: 398 AAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
A +LD+ME G D T+ SLL+ Y + R+A A+LK+++ + L N S
Sbjct: 710 DAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKRIQIAGLKPNTS 763
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 18/158 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID I+ G+L A + D M+ + + SL++ + +EAEAL+ +M K
Sbjct: 801 TTLIDMYIKTGYLPYARMVFDMMD----EKNIVAWNSLISGLSYTGLLKEAEALISRMEK 856
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ N A S + K++ A +++ +M++ +
Sbjct: 857 EGIKSN--------------AVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWT 902
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+ + K G+ LKI+ +MQE + P T L+
Sbjct: 903 AILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLL 940
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 71/194 (36%), Gaps = 15/194 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LIN K G + L+ L K + + +ID L LG L A D+L DME
Sbjct: 397 LINALCKVG-DPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMEST 455
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G P + TY +++ K EAE + QM + +N A +
Sbjct: 456 GCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN--------------AITFNT 501
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D K D A LI +M E NS + +CK I A I M
Sbjct: 502 LIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 561
Query: 530 IRPTVETFYYLVYG 543
V T+ L+ G
Sbjct: 562 FEVDVVTYGTLING 575
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 112/297 (37%), Gaps = 34/297 (11%)
Query: 327 EGKQELVLFRNGKLLHSNRAMAK-----LINGYKKHGK-NSELSWLLLSIKKEHHSFGES 380
EG E L ++L + K LINGY K G+ L ++ I +
Sbjct: 229 EGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEP--DQ 286
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
+ ++ L Q + A ++D M GH D TY ++ K EA+ +L Q
Sbjct: 287 ITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 346
Query: 441 M-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499
M + CL + ++ A+ + L + DLA +++ + +
Sbjct: 347 MVDRGCLPDITTFNTLI-----------AALCTGNRLEEALDLA----RQVTVKGVSPDV 391
Query: 500 YKLNSSIYFFCKGKMIGD---ALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
Y N I CK +GD AL+++ M+ P T+ L+ SL
Sbjct: 392 YTFNILINALCK---VGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKAL-- 446
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
D+ +++ES S Y T++ + E EV M Q + + + + +
Sbjct: 447 --DLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNT 501
>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 666
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 34/240 (14%)
Query: 400 HDILDD----MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
H+ DD +L P D T+ +++ Y + K E LL+++ + LV N +
Sbjct: 414 HNRFDDAKHMFDLMASP-DVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 472
Query: 456 VSERFSEVADKSAS------------FTDTSS-------LMDKSDLAESLIQEMREEAAL 496
+ F EV + +A+ DT + + L E+L E+ E +
Sbjct: 473 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEAL--ELFEVIQM 530
Query: 497 STI----YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552
S I N I+ CKG + +A ++ + + P V+T+ ++ G D
Sbjct: 531 SKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISD 590
Query: 553 ITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
+L+ +K N Y TL+ L+ G ++ +E+I M+ D K
Sbjct: 591 ANVLFHKMKDNGHEP----DNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIK 646
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 20/205 (9%)
Query: 338 GKLLHSNRAM-AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL 396
GK LH + ++NG K G +++ + LLS +E H + + S +ID L + G
Sbjct: 254 GKGLHIDVVTYGTIVNGMCKMG-DTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHH 312
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV 456
A + +M G + TY ++ + + +A+ LL+ M + + ++ +++
Sbjct: 313 SDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM----IEREINPDVLT 368
Query: 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+ K + AE L EM NS IY FCK
Sbjct: 369 FNALISASVKEGKLFE----------AEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFD 418
Query: 517 DALKIYRRMQEMKIRPTVETFYYLV 541
DA + M ++ P V TF ++
Sbjct: 419 DA----KHMFDLMASPDVVTFNTII 439
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 95/235 (40%), Gaps = 24/235 (10%)
Query: 390 LIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN 449
+++ GFLEA + D M G T+ +L+ EA AL+ +M + +
Sbjct: 202 MVETGFLEAVA-LFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKM----VGKG 256
Query: 450 LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFF 509
L ++V + + + DT S A +L+ +M E + ++ I
Sbjct: 257 LHIDVVT---YGTIVNGMCKMGDTKS-------ALNLLSKMEETHIKPDVVIYSAIIDRL 306
Query: 510 CKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGV 568
CK DA ++ M E I P V T+ ++ G S + D L D I+R I V
Sbjct: 307 CKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDV 366
Query: 569 LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS---EFLKHHK 620
L + L+ ++ G ++ M + ++ D + Y S F KH++
Sbjct: 367 LT-----FNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNR 416
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 14/156 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I+ L G + A +++ M G +D TY +++ K+ + A LL +M ++
Sbjct: 232 LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 291
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ ++ + +R K +D A+ L EM E+ ++ N
Sbjct: 292 IKPDVVIYSAIIDRLC----KDGHHSD----------AQYLFSEMLEKGIAPNVFTYNCM 337
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
I FC DA ++ R M E +I P V TF L+
Sbjct: 338 IDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALI 373
>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
Length = 571
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 17/174 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID + +E A +L++M+ G P Y SL+ A K K + A L +++++
Sbjct: 410 SILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE 469
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+C + V+ + K+ D ++ D EM + +Y N
Sbjct: 470 NCGSSSSRVYAVMIKHLG----KAGRLDDAINMFD----------EMNKLGCAPDVYAYN 515
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+ + + M+ +AL RRMQE P + ++ ++ G L+ D+ + W
Sbjct: 516 ALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNG---LQKQEDLIVQW 566
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 105/249 (42%), Gaps = 23/249 (9%)
Query: 358 GKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTT 417
G+ ++ L + E H F ++ S +I A +LG ++A +L++M+ G +
Sbjct: 208 GQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKI 267
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477
Y L+ ++K+ A +L ++MR ++ ++T+ +
Sbjct: 268 YTMLVALFFKLNDVHGALSLFEEMRHQYCRPDV-----------------FTYTELIRGL 310
Query: 478 DKS---DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534
K+ D A EM+ E +N+ I F K + DA+K+++ M ++ P+V
Sbjct: 311 GKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSV 370
Query: 535 ETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVME 594
T+ ++ + W +R ESG+ + S Y L+ F + E+ M
Sbjct: 371 VTYNTIIKALFESKSRASEVPSW--FERMKESGI-SPSSFTYSILIDGFCKTNRMEKAMM 427
Query: 595 VIGYMKKQN 603
++ M ++
Sbjct: 428 LLEEMDEKG 436
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 71/194 (36%), Gaps = 15/194 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LIN K G + L+ L K + + +ID L LG L A D+L DME
Sbjct: 397 LINALCKVG-DPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMEST 455
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G P + TY +++ K EAE + QM + +N A +
Sbjct: 456 GCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN--------------AITFNT 501
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
D K D A LI +M E NS + +CK I A I M
Sbjct: 502 LIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 561
Query: 530 IRPTVETFYYLVYG 543
V T+ L+ G
Sbjct: 562 FEVDVVTYGTLING 575
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 112/297 (37%), Gaps = 34/297 (11%)
Query: 327 EGKQELVLFRNGKLLHSNRAMAK-----LINGYKKHGK-NSELSWLLLSIKKEHHSFGES 380
EG E L ++L + K LINGY K G+ L ++ I +
Sbjct: 229 EGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEP--DQ 286
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
+ ++ L Q + A ++D M GH D TY ++ K EA+ +L Q
Sbjct: 287 ITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 346
Query: 441 M-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499
M + CL + ++ A+ + L + DLA +++ + +
Sbjct: 347 MVDRGCLPDITTFNTLI-----------AALCTGNRLEEALDLA----RQVTVKGVSPDV 391
Query: 500 YKLNSSIYFFCKGKMIGD---ALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
Y N I CK +GD AL+++ M+ P T+ L+ SL
Sbjct: 392 YTFNILINALCK---VGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKAL-- 446
Query: 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
D+ +++ES S Y T++ + E EV M Q + + + + +
Sbjct: 447 --DLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNT 501
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,193,235,221
Number of Sequences: 23463169
Number of extensions: 358122246
Number of successful extensions: 921184
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 2354
Number of HSP's that attempted gapping in prelim test: 898642
Number of HSP's gapped (non-prelim): 17711
length of query: 653
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 504
effective length of database: 8,863,183,186
effective search space: 4467044325744
effective search space used: 4467044325744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)