BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048743
(653 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B3H672|PP317_ARATH Pentatricopeptide repeat-containing protein At4g17616
OS=Arabidopsis thaliana GN=At4g17616 PE=2 SV=1
Length = 674
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/656 (51%), Positives = 465/656 (70%), Gaps = 25/656 (3%)
Query: 2 FCSSSVQQEKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFI 61
FC+S V+ +L+WE SS+ +L +KLE+A K+H+V +AW+ F DF+RL+G PE ++NRF+
Sbjct: 38 FCTS-VKPARLNWEVSSQVILKKKLETALKDHRVDDAWDVFKDFKRLYGFPESVIMNRFV 96
Query: 62 TDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLG 121
T L YS++ WL KA DL K +L D+L KLSLSLARAQM A ILR+ML
Sbjct: 97 TVLSYSSDAGWLCKASDLTRLALKQNPGMLSGDVLTKLSLSLARAQMVESACSILRIMLE 156
Query: 122 RENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGA--ELIKPDTMI 179
+ + SD+L LV +HMVKTEIGTCLASN+L+Q+CD F+ + K N + ++KPDT++
Sbjct: 157 KGYVLTSDVLRLVVMHMVKTEIGTCLASNYLVQVCDRFVEFNVGKRNSSPGNVVKPDTVL 216
Query: 180 FNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYID 239
FNLVL +CVRFG SLKGQ ++ELM++ VVADA+SI+I++ I+EMN RDEL+KFK +I
Sbjct: 217 FNLVLGSCVRFGFSLKGQELIELMAKVDVVADAYSIVIMSCIYEMNGMRDELRKFKEHIG 276
Query: 240 QLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLIS 299
Q+ HYQ F+++LLSL FKFDDI +AG L LDM + + + L D++KP ++
Sbjct: 277 QVPPQLLGHYQHFFDNLLSLEFKFDDIGSAGRLALDMCKSKVLVSVENLGFDSEKPRVLP 336
Query: 300 IGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGK 359
+GS ++R GLK+ I P+LL++DS L ++ + V + N KL +N+ +AKL+ GYK+H
Sbjct: 337 VGSHHIRSGLKIHISPKLLQRDSSLGVDTEATFVNYSNSKLGITNKTLAKLVYGYKRHDN 396
Query: 360 NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYK 419
ELS LL S+ G S LC+DVIDA + +G+LEAAHDILDDM AG+PM+ TY+
Sbjct: 397 LPELSKLLFSL-------GGSRLCADVIDACVAIGWLEAAHDILDDMNSAGYPMELATYR 449
Query: 420 SLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDK 479
+L+ YYK KM R AE LLKQM K+ L+ + S E+VVS E +K + +
Sbjct: 450 MVLSGYYKSKMLRNAEVLLKQMTKAGLITDPSNEIVVS---PETEEKDS---------EN 497
Query: 480 SDLAESLIQEM---REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
++L + L+QE+ ++ A S +Y+LNSS+Y+FCK KM GDAL YR++ +MKI PTV++
Sbjct: 498 TELRDLLVQEINAGKQMKAPSMLYELNSSLYYFCKAKMQGDALITYRKIPKMKIPPTVQS 557
Query: 537 FYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVI 596
F+ L+ +SSL MYR+ITI+WGDIKRNI S L ++DL E L++NFL+GGYFERVME+I
Sbjct: 558 FWILIDMYSSLGMYREITIVWGDIKRNIASKNLKTTQDLLEKLVVNFLRGGYFERVMELI 617
Query: 597 GYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
YMK+ +MY D MYK+E+LK HK+LYR LK S+A TEAQ++RL +V+ FRK GI
Sbjct: 618 SYMKENDMYNDLTMYKNEYLKLHKNLYRTLKASDAVTEAQAQRLEHVKTFRKLVGI 673
>sp|Q9SA60|PPR6_ARATH Pentatricopeptide repeat-containing protein At1g03100,
mitochondrial OS=Arabidopsis thaliana GN=At1g03100 PE=2
SV=1
Length = 793
Score = 285 bits (728), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 203/699 (29%), Positives = 351/699 (50%), Gaps = 78/699 (11%)
Query: 25 KLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKI- 83
+++ A H+ EAW F ++ G P + VVN + S + +WLQK LV +
Sbjct: 101 EIQIAVDEHRCDEAWRLFEQHMQMEGFPRKSVVNNVVVCFAESLDSNWLQKGYSLVEQAY 160
Query: 84 QKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEI 143
++GK +LL+ + L LSL+LA++ M VPAS ILR ++ E P V HM
Sbjct: 161 EEGKQNLLEKEPLLYLSLALAKSGMAVPASTILRKLVETEEYPHVSAWSAVLAHMSLAGS 220
Query: 144 GTCLASNFLIQLCDVFLH--LSAEKSNGAELI--KPDTMIFNLVLHACVRFGSSLKGQHI 199
G+ L++ ++++ +F + + K + A L+ KP+T + N+ L C+ FG++ K + +
Sbjct: 221 GSYLSAELVLEIGYLFHNNRVDPRKKSNAPLLAMKPNTQVLNVALAGCLLFGTTRKAEQL 280
Query: 200 MELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSL 259
++++ + GV ADA+ ++I+A I+E N +R+EL+K + +ID+ + QFY LL
Sbjct: 281 LDMIPKIGVKADANLLVIMAHIYERNGRREELRKLQRHIDEACNLNESQFWQFYNCLLMC 340
Query: 260 HFKFDDIDAAGELILDMNR----YREPLPNPKLR---QDAQKPYLISIG----------S 302
H KF D+++A +++L+M R R L L D + Y + +
Sbjct: 341 HLKFGDLESASKMVLEMLRRGKVARNSLGAAILEFDTADDGRLYTKRVSGKGSEVKEHDN 400
Query: 303 PNLRCGLKLQIMP--ELLEKDSILKMEGKQ---------------ELVLFRNGKLLHSNR 345
P R ++P E LK+E + EL+ G L +
Sbjct: 401 PETRVVSIHSMIPYDEFSRDRKFLKLEAEAKDVLGALLAKLHVQVELITSERGVLQPTEE 460
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSF-GESTLCSDVIDALIQLGFLEAAHDILD 404
KL + + GK EL+ LL + E ++++ +VI+A I LG L+ AHD+LD
Sbjct: 461 IYVKLAKAFLESGKMKELAKFLLKAEHEDSPVSSDNSMLINVINACISLGMLDQAHDLLD 520
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC-EMVVSER---- 459
+M +AG S+ Y SLL AY RE +LL+ +K+ + + SC E ++ +
Sbjct: 521 EMRMAGVRTGSSVYSSLLKAYCNTNQTREVTSLLRDAQKAGIQLDSSCYEALIQSQVIQN 580
Query: 460 --------FSEVAD---------------KSASFTDTSSLMDKSDLAESLIQEMREEAAL 496
F E+ + K + LM K L++E+RE +L
Sbjct: 581 DTHGALNVFKEMKEAKILRGGNQKFEKLLKGCEGNAEAGLMSK------LLREIREVQSL 634
Query: 497 -STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL-EMYRDIT 554
+ ++ N+ I+FF K ++ DA K +RM+ + P +TF+ +V G++++ Y ++T
Sbjct: 635 DAGVHDWNNVIHFFSKKGLMQDAEKALKRMRSLGHSPNAQTFHSMVTGYAAIGSKYTEVT 694
Query: 555 ILWGDIKR-NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
LWG++K + + ++L + +L F++GG+F R EV+ M+K+NM+VDK Y+
Sbjct: 695 ELWGEMKSIAAATSSMKFDQELLDAVLYTFVRGGFFSRANEVVEMMEKKNMFVDKYKYRM 754
Query: 614 EFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
FLK+HK Y+ K ++E+Q K+ F+KW G+
Sbjct: 755 LFLKYHKTAYKG-KAPKVQSESQLKKREAGLVFKKWLGL 792
>sp|Q9CAA5|PP109_ARATH Pentatricopeptide repeat-containing protein At1g68980,
mitochondrial OS=Arabidopsis thaliana GN=At1g68980 PE=2
SV=1
Length = 619
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 145/645 (22%), Positives = 268/645 (41%), Gaps = 92/645 (14%)
Query: 32 NHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCY-------SAEPHWLQKACDLVLKIQ 84
H +AW+ F F +P++ ++N IT L ++ H L++A +
Sbjct: 41 THDTDQAWKVFRSFAAASSLPDKRLLNSLITHLSSFHNTDQNTSLRHRLKRAFVSTTYVI 100
Query: 85 KGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIG 144
+ LL+ + + + S+ A+ PA ++ M DL + + + + E G
Sbjct: 101 EKDPILLEFETVRTVLESMKLAKASGPALALVECMFKNRYFVPFDLWGDLLIDVCR-ENG 159
Query: 145 TCLASNFLIQLCDVFLHLSAEKSNGA-----ELIKPDTMIFNLVLHACVRFGSSLK-GQH 198
+ A FL + E A + +KPD + N L AC R SL ++
Sbjct: 160 SLAA----------FLKVFRESCRIAVDEKLDFMKPDLVASNAALEACCRQMESLADAEN 209
Query: 199 IMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLS 258
++E M GV D S LA ++ R+++ + + +D L FA + Y S++S
Sbjct: 210 LIESMDVLGVKPDELSFGFLAYLYARKGLREKISELEDLMDGLG--FASR-RILYSSMIS 266
Query: 259 LHFKFDDIDAAGELIL-------DMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKL 311
+ K D+D+A ++IL + + + E +R I S ++ KL
Sbjct: 267 GYVKSGDLDSASDVILCSLKGVGEASSFSEETYCELVRG--------FIESKSVESLAKL 318
Query: 312 QIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIK 371
I + LE S ++ KL S +++ +N G +L +
Sbjct: 319 IIEAQKLESMSTDVGGSVGFGIVNACVKLGFSGKSILDELNAQGGSGGIGVYVPILKAYC 378
Query: 372 KEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMF 431
KE + + L +++ + +QL D TY +++ A F
Sbjct: 379 KEGRTSEATQLVTEISSSGLQL--------------------DVETYNTMIEASMTKHDF 418
Query: 432 REAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD-KSASFTDTSSLMD--KSDLAESLIQ 488
A L + MR+ + VAD K T + L++ + +L ++
Sbjct: 419 LSALTLFRDMRE-----------------TRVADLKRCYLTIMTGLLENQRPELMAEFVE 461
Query: 489 EMREEAALST-IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL 547
E+ E+ + + NS I+ FCK +GDA +RRM ++ P +T+ L+ G+ S
Sbjct: 462 EVMEDPRVEVKSHDWNSIIHAFCKSGRLGDAKSTFRRMTFLQYEPNNQTYLSLINGYVSC 521
Query: 548 EMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
E Y ++ ++W + K + L + L ++GG+F ++VI ++ ++VD
Sbjct: 522 EKYFEVVVIWKEFKDKKAK----LEHALADAFLNALVKGGFFGTALQVIEKCQEMKIFVD 577
Query: 608 KLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
K YK+ F++ K+L RL R + K++ + AF+ WA I
Sbjct: 578 KWRYKATFMETQKNL--RLPKLRKR---KMKKIEFLDAFKNWARI 617
>sp|P0C7R4|PP110_ARATH Pentatricopeptide repeat-containing protein At1g69290
OS=Arabidopsis thaliana GN=At1g69290 PE=2 SV=1
Length = 658
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 163/335 (48%), Gaps = 36/335 (10%)
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFG--ESTLCSDVIDALIQLGFLEAAHDILDDM 406
+L+ G+ + L+ ++L +K S+ +S++ +I+A + LGF + AH IL++M
Sbjct: 329 ELVKGFIESKSVKSLAKVILEAQKLESSYVGVDSSVGFGIINACVNLGFSDKAHSILEEM 388
Query: 407 -ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL-----VQNLSCEMVVSE-- 458
G + Y +L AY K EA L+ ++ S L + N E ++
Sbjct: 389 IAQGGGSVGIGVYVPILKAYCKEYRTAEATQLVTEISSSGLQLDVEISNALIEASMTNQD 448
Query: 459 -----------RFSEVADKSASF-TDTSSLMD--KSDLAESLIQEMREEAALS-TIYKLN 503
R + V D S+ T + L++ + +L + + E+ E+ + + N
Sbjct: 449 FISAFTLFRDMRENRVVDLKGSYLTIMTGLLENQRPELMAAFLDEVVEDPRVEVNSHDWN 508
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
S I+ FCK + DA + +RRM ++ P +T+ L+ G+ S E Y ++ +LW +IK
Sbjct: 509 SIIHAFCKSGRLEDARRTFRRMVFLRYEPNNQTYLSLINGYVSGEKYFNVLLLWNEIKGK 568
Query: 564 IESGVLAVSRD-----LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKH 618
I S V A R L + L ++GG+F+ M+V+ ++ ++VDK YK F++
Sbjct: 569 I-SSVEAEKRSRLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKWRYKQAFMET 627
Query: 619 HKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGID 653
HK L RL R + + LV AF+ WAG++
Sbjct: 628 HKKL--RLPKLRKRNYKKMESLV---AFKNWAGLN 657
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 111/251 (44%), Gaps = 21/251 (8%)
Query: 33 HQVGEAWETFNDFQRLHGIPERHVVNRFITDLC---YSAE--PHWLQKACDLVLKIQKGK 87
H EAW+ F +PE+ ++N IT L S E H L++A + +
Sbjct: 72 HYTDEAWKAFRSLTAASSLPEKRLINSLITHLSGVEGSGESISHRLKRAFASAAYVIEKD 131
Query: 88 ADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCL 147
LL+ + + L S+ A+ PA +++ M DL + H+V I C
Sbjct: 132 PILLEFETVRTLLESMKLAKAAGPALALVKCMFKNRYFVPFDL----WGHLV---IDICR 184
Query: 148 ASNFLIQLCDVF---LHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLK-GQHIMELM 203
+ L VF +S ++ E +KPD + N L AC R SL ++++E M
Sbjct: 185 ENGSLAPFLKVFKESCRISVDEK--LEFMKPDLVASNAALEACCRQMESLADAENVIESM 242
Query: 204 SQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKF 263
+ GV D S LA ++ R+++ + + +D FA + Y +++S + K
Sbjct: 243 AVLGVKPDELSFGFLAYLYARKGLREKISELENLMDGFG--FASR-RILYSNMISGYVKS 299
Query: 264 DDIDAAGELIL 274
D+D+ ++IL
Sbjct: 300 GDLDSVSDVIL 310
>sp|Q9SF38|PP222_ARATH Pentatricopeptide repeat-containing protein At3g09650,
chloroplastic OS=Arabidopsis thaliana GN=HCF152 PE=2
SV=1
Length = 778
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/349 (21%), Positives = 153/349 (43%), Gaps = 40/349 (11%)
Query: 344 NRAMAKLINGYKKHGKNSELSWLLLSIKK--EHHSFGESTLCSDVIDALIQLGFLEAAHD 401
+R L+ GY K+G+ ++ + +L ++++ + +S + + V+ A + G ++ A
Sbjct: 414 SRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQ 473
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN--LSCEMVVS-- 457
+L +M G P + TY LL Y K AE LL++M + ++ +S +++
Sbjct: 474 VLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGC 533
Query: 458 ----------ERFSEVADKSASFTDTS--------SLMDKSDLAESLIQEMREEAALST- 498
F+E+ + + T S ++ + LA + EM + +
Sbjct: 534 ILIDDSAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVD 593
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG 558
+ N + +C+ +I DA ++ RM+E P V T+ L G S D +LW
Sbjct: 594 LIAWNMLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWK 653
Query: 559 DIKR---------------NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603
+IK + +L L +TL ++ +F++ +E+I M++
Sbjct: 654 EIKERCAVKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENG 713
Query: 604 MYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAGI 652
+ +K YK +++ H ++ S AR + + +R +AF+ W G+
Sbjct: 714 IPPNKTKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGL 762
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/257 (20%), Positives = 108/257 (42%), Gaps = 14/257 (5%)
Query: 31 KNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADL 90
+N + EAW + Q H +P ++R ++ L Y ++P L +A ++ +++ + L
Sbjct: 93 RNRKTDEAWAKY--VQSTH-LPGPTCLSRLVSQLSYQSKPESLTRAQSILTRLRNER-QL 148
Query: 91 LQLDL--LAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKT-EIGTCL 147
+LD L L+++ A++ + A +++ M+ LP + + + G
Sbjct: 149 HRLDANSLGLLAMAAAKSGQTLYAVSVIKSMIRSGYLPHVKAWTAAVASLSASGDDGPEE 208
Query: 148 ASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTG 207
+ I + + G +PDT FN VL+AC G + K + E MS+
Sbjct: 209 SIKLFIAITRRVKRFGDQSLVGQS--RPDTAAFNAVLNACANLGDTDKYWKLFEEMSEWD 266
Query: 208 VVADAHSIIILAQIHEMNCQRDELKKFKCYI-DQLSTPFAHHYQQFYESLLSLHFKFDDI 266
D + ++ ++ C R K+ ++ +++ SL++ + F D+
Sbjct: 267 CEPDVLTYNVMIKL----CARVGRKELIVFVLERIIDKGIKVCMTTMHSLVAAYVGFGDL 322
Query: 267 DAAGELILDMNRYREPL 283
A ++ M R L
Sbjct: 323 RTAERIVQAMREKRRDL 339
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 120/285 (42%), Gaps = 28/285 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+NG K G+ L I K E + + +I + G L+ A +L DM +
Sbjct: 328 LMNGLCKIGRVDAAKDLFYRIPKP-----EIVIFNTLIHGFVTHGRLDDAKAVLSDMVTS 382
Query: 410 -GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G D TY SL+ Y+K + A +L MR N+ ++ + F ++
Sbjct: 383 YGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLG---- 438
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
K D A +++ EM + N I FCK I +A++I+R M
Sbjct: 439 ----------KIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK 488
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588
+P V TF L+ G ++ + L D+ I GV+A + Y TL+ FL+ G
Sbjct: 489 GCKPDVYTFNSLISGLCEVDEIKHALWLLRDM---ISEGVVA-NTVTYNTLINAFLRRGE 544
Query: 589 FERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNART 633
+ +++ M Q +D++ Y S K L R +V AR+
Sbjct: 545 IKEARKLVNEMVFQGSPLDEITYNSLI----KGLCRAGEVDKARS 585
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 23/181 (12%)
Query: 365 WLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424
WLL + E + + +I+A ++ G ++ A ++++M G P+D TY SL+
Sbjct: 515 WLLRDMISEG-VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKG 573
Query: 425 YYKVKMFREAEALLKQM-RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLA 483
+ +A +L ++M R N+SC ++++ + +S +
Sbjct: 574 LCRAGEVDKARSLFEKMLRDGHAPSNISCNILING------------------LCRSGMV 615
Query: 484 ESLIQ---EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
E ++ EM + I NS I C+ I D L ++R++Q I P TF L
Sbjct: 616 EEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTL 675
Query: 541 V 541
+
Sbjct: 676 M 676
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 113/260 (43%), Gaps = 47/260 (18%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID L + G L+ A ++ ++ME+ G D TY +L+ + + + LL+ M K
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ N VV+ FS + D SF L + A+ L++EM + N
Sbjct: 327 RKISPN-----VVT--FSVLID---SFVKEGKLRE----ADQLLKEMMQRGIAPNTITYN 372
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH-------SSLEMYRDITIL 556
S I FCK + +A+++ M P + TF L+ G+ LE++R+++ L
Sbjct: 373 SLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMS-L 431
Query: 557 WGDIKRNI----------ESGVLAVSRDL---------------YETLLLNFLQGGYFER 591
G I + +SG L V++ L Y+ LL G E+
Sbjct: 432 RGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEK 491
Query: 592 VMEVIGYMKKQNMYVDKLMY 611
+E+ G ++K M +D +Y
Sbjct: 492 ALEIFGKIEKSKMELDIGIY 511
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 103/474 (21%), Positives = 190/474 (40%), Gaps = 59/474 (12%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKF 234
PD + ++ V++ RFG K ++E+M + G+ +++ I I + C+
Sbjct: 279 PDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSY---IYGSIIGLLCR------- 328
Query: 235 KCYIDQLSTPFAHHYQQ-------FYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPK 287
C + + F+ +Q Y +L+ K DI AA + +M+ R+ P+
Sbjct: 329 ICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS-RDITPDV- 386
Query: 288 LRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKME---GKQELVLFRNGKLLHSN 344
L A IG L ++ + LE DS+ E G + ++ +H++
Sbjct: 387 LTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNH 446
Query: 345 RAMA----------KLINGYKKHG---KNSELSWLLLSIKKEHHSFGESTLCSDVIDALI 391
A LI+G K G +EL + I + + F ++ +++ L
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS----IVNGLC 502
Query: 392 QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS 451
+ G +E A ++ + E AG D+ TY +L+ AY K +A+ +LK+M L +
Sbjct: 503 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIV 562
Query: 452 CEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK 511
V+ F L + E L+ M + NS + +C
Sbjct: 563 TFNVLMNGF--------------CLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCI 608
Query: 512 GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV 571
+ A IY+ M + P +T+ LV GH ++ L+ ++K +V
Sbjct: 609 RNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMK----GKGFSV 664
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRR 625
S Y L+ FL+ F EV M+++ + DK ++ +F K+ +R
Sbjct: 665 SVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF--DFFSDTKYKGKR 716
Score = 41.2 bits (95), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 25/190 (13%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI + QLG ++ AH +L MEL G+ D +Y +++ Y + + L++ M++
Sbjct: 252 VIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 311
Query: 446 LVQN---------LSCEMV----VSERFSEVADKSASFTDT---SSLMD----KSDL--A 483
L N L C + E FSE+ + DT ++L+D + D+ A
Sbjct: 312 LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMI-RQGILPDTVVYTTLIDGFCKRGDIRAA 370
Query: 484 ESLIQEMREEAALSTIYKLNSSIYFFCK-GKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
EM + + I FC+ G M+ +A K++ M + P TF L+
Sbjct: 371 SKFFYEMHSRDITPDVLTYTAIISGFCQIGDMV-EAGKLFHEMFCKGLEPDSVTFTELIN 429
Query: 543 GHSSLEMYRD 552
G+ +D
Sbjct: 430 GYCKAGHMKD 439
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 121/284 (42%), Gaps = 28/284 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+ Y G E L+ ++ + S G T + VI+ L + G E A ++ +M +
Sbjct: 276 LISAYSSKGLMEEAFELMNAMPGKGFSPGVYTY-NTVINGLCKHGKYERAKEVFAEMLRS 334
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA--DKS 467
G DSTTY+SLL K E E + MR +V +L C + F+ DK+
Sbjct: 335 GLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKA 394
Query: 468 ASFTDT---SSLMDKSDLAESLIQ----------------EMREEAALSTIYKLNSSIYF 508
+ ++ + L+ + + LIQ EM ++ + N+ ++
Sbjct: 395 LMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHG 454
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESG 567
CK KM+G+A K++ M E + P T L+ GH L ++ L+ +K + I
Sbjct: 455 LCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLD 514
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
V+ Y TLL F + G + E+ M + + + Y
Sbjct: 515 VVT-----YNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISY 553
Score = 40.4 bits (93), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 26/211 (12%)
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473
+ + + L+ Y + + REA +R S+ F+ D + +
Sbjct: 164 NDSVFDLLIRTYVQARKLREAHEAFTLLR--------------SKGFTVSIDACNALIGS 209
Query: 474 SSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK-GKM--IGDALKIYRRMQEMKI 530
+ +LA + QE+ +Y LN + CK GKM +G L ++QE +
Sbjct: 210 LVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLS---QVQEKGV 266
Query: 531 RPTVETFYYLVYGHSSLEMYRDITILWGDIK-RNIESGVLAVSRDLYETLLLNFLQGGYF 589
P + T+ L+ +SS + + L + + GV Y T++ + G +
Sbjct: 267 YPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYT-----YNTVINGLCKHGKY 321
Query: 590 ERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
ER EV M + + D Y+S ++ K
Sbjct: 322 ERAKEVFAEMLRSGLSPDSTTYRSLLMEACK 352
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 73/167 (43%), Gaps = 20/167 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +++AL G L A + D+M S++ Y + + E+ L++M
Sbjct: 554 SILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKM-- 611
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES--LIQEMREEAA--LSTI 499
+SE F V D + T + + +++++ L+++M EE + +
Sbjct: 612 ------------ISEGF--VPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDV 657
Query: 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546
+ NS ++ FC+ + +A + R+M E + P T+ ++ G S
Sbjct: 658 FTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVS 704
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 24/240 (10%)
Query: 327 EGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSW-LLLSIKKEHHSFGESTLCSD 385
E + L R+ S A LI + G EL+W + I + TL +
Sbjct: 183 EAHEAFTLLRSKGFTVSIDACNALIGSLVRIGW-VELAWGVYQEISRSGVGINVYTL-NI 240
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+++AL + G +E L ++ G D TY +L++AY + EA L+ M
Sbjct: 241 MVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKG 300
Query: 446 L---------VQNLSCEMVVSERFSEVADK-------SASFTDTSSLMD---KSDLAES- 485
V N C+ ER EV + S T S LM+ K D+ E+
Sbjct: 301 FSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETE 360
Query: 486 -LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ +MR + + +S + F + + AL + ++E + P + L+ G+
Sbjct: 361 KVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGY 420
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 109/230 (47%), Gaps = 23/230 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV----KMFREAEALLKQM 441
VI+AL + G + A D+++DM++ G + +Y +L+ Y K+ KM++ A+A+LK+M
Sbjct: 229 VINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYK-ADAVLKEM 287
Query: 442 RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYK 501
++ + NL+ ++ + F + + S + +EM ++ +
Sbjct: 288 VENDVSPNLTTFNILIDGFWKDDNLPGSM--------------KVFKEMLDQDVKPNVIS 333
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
NS I C G I +A+ + +M ++P + T+ L+ G +M ++ ++G +K
Sbjct: 334 YNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVK 393
Query: 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
G + +R +Y L+ + + G + + M+++ + D Y
Sbjct: 394 ---GQGAVPTTR-MYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTY 439
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 15/161 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I+ L G + A + D M AG + TY +L+ + K M +EA + ++
Sbjct: 335 NSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKG 394
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
V + R + D + K D +L +EM E + + N
Sbjct: 395 QGAVP--------TTRMYNM------LIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYN 440
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
I C+ I A K++ ++ K P + TF+ L+ G+
Sbjct: 441 CLIAGLCRNGNIEAAKKLFDQLTS-KGLPDLVTFHILMEGY 480
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 103/461 (22%), Positives = 184/461 (39%), Gaps = 51/461 (11%)
Query: 174 KPDTMIFNLVLHACVRFGSSLKGQHI-MELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
KP + +N V+ ++ G K + E+ ++ D + L +E + D
Sbjct: 194 KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAI 253
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNR---------YREPL 283
+ D++ ++ Y +LL ++FK ++ A +L +M R Y E +
Sbjct: 254 RL---FDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310
Query: 284 PNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGK-----------QEL 332
L + + LR GL P+++ ++++ + GK E+
Sbjct: 311 KG--LGKAGRVDEAYGFYKDMLRDGL----TPDVVFLNNLMNILGKVGRVEELTNVFSEM 364
Query: 333 VLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ 392
++R + S + K + K H SE+S +K + S E T S +ID +
Sbjct: 365 GMWRCTPTVVSYNTVIKALFESKAH--VSEVSSWFDKMKADSVSPSEFTY-SILIDGYCK 421
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
+E A +L++M+ G P Y SL+ A K K + A L K+++ +N
Sbjct: 422 TNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELK-----ENFGN 476
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
VS R V K F L + D L EM+ + + +Y N+ + K
Sbjct: 477 ---VSSRVYAVMIK--HFGKCGKLSEAVD----LFNEMKNQGSGPDVYAYNALMSGMVKA 527
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVS 572
MI +A + R+M+E R + + ++ G + + R ++ IK SG+
Sbjct: 528 GMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKH---SGIKP-D 583
Query: 573 RDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y TLL F G FE ++ MK + D + Y S
Sbjct: 584 GVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSS 624
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 24/269 (8%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ING K G+ +L+ LL+ ++ + + + +ID L + ++ A D+ + ME
Sbjct: 219 GAVINGLCKRGE-PDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKME 277
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY L++ + +A LL M L +N++ ++V F+ + D
Sbjct: 278 TKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDM----LEKNINPDLVF---FNALID-- 328
Query: 468 ASFTDTSSLMDKSDLAESLIQEM-REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
+F L++ AE L EM + + + N+ I FCK K + + ++++R M
Sbjct: 329 -AFVKEGKLVE----AEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMS 383
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNFL 584
+ + T+ L++G RD K+ + G V D+ Y LL
Sbjct: 384 QRGLVGNTVTYTTLIHGFFQA---RDCDNAQMVFKQMVSDG---VHPDIMTYNILLDGLC 437
Query: 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G E + V YM+K++M +D + Y +
Sbjct: 438 NNGNVETALVVFEYMQKRDMKLDIVTYTT 466
Score = 40.4 bits (93), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 16/149 (10%)
Query: 396 LEAAHDILDDMELAGHPMDSTT-YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEM 454
L+ A + DM + P S + LL+A K+ F +L +QM+ + NL
Sbjct: 56 LDDAIGLFGDM-VKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114
Query: 455 VVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKM 514
+ F + S LA +++ +M + +I LNS + FC G
Sbjct: 115 IFINYFCRRSQLS--------------LALAILGKMMKLGYGPSIVTLNSLLNGFCHGNR 160
Query: 515 IGDALKIYRRMQEMKIRPTVETFYYLVYG 543
I +A+ + +M EM +P TF LV+G
Sbjct: 161 ISEAVALVDQMVEMGYQPDTVTFTTLVHG 189
Score = 40.0 bits (92), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 76/165 (46%), Gaps = 15/165 (9%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
++D M G+ D+ T+ +L+ ++ EA AL+++M +V+ ++V
Sbjct: 167 LVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM----VVKGCQPDLVTY---- 218
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
+ + + DLA +L+ +M + + + N+ I CK K + DA +
Sbjct: 219 ------GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDL 272
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIE 565
+ +M+ I+P V T+ L+ + + D + L D +++NI
Sbjct: 273 FNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNIN 317
Score = 37.4 bits (85), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 75/436 (17%), Positives = 164/436 (37%), Gaps = 63/436 (14%)
Query: 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKK 233
+PDT+ F ++H + + + ++E M G D ++ + C+R E
Sbjct: 177 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPD---LVTYGAVINGLCKRGEPDL 233
Query: 234 FKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQ 293
++++ Y +++ K+ +D A +L K+
Sbjct: 234 ALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLF------------NKMETKGI 281
Query: 294 KPYLISIGSPNLRCGLKL-------QIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRA 346
KP + + +P + C +++ ++LEK+ +LV F
Sbjct: 282 KPDVFTY-NPLISCLCNYGRWSDASRLLSDMLEKNI------NPDLVFFN---------- 324
Query: 347 MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
LI+ + K GK E L + K H F + + +I + +E ++ +M
Sbjct: 325 --ALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREM 382
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
G ++ TY +L+ +++ + A+ + KQM + ++ ++ +
Sbjct: 383 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLD-------- 434
Query: 467 SASFTDTSSLMDKSDLAESLI--QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
L + ++ +L+ + M++ I + I CK + D ++
Sbjct: 435 --------GLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCS 486
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584
+ ++P V T+ ++ G + + L+ ++K E G L S Y TL+ L
Sbjct: 487 LSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMK---EDGPLPNS-GTYNTLIRARL 542
Query: 585 QGGYFERVMEVIGYMK 600
+ G E+I M+
Sbjct: 543 RDGDEAASAELIKEMR 558
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 98/215 (45%), Gaps = 10/215 (4%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L+ GY K GK E+ + +K+EH S +ID + G + A +I + + A
Sbjct: 485 LLGGYGKQGKYDEVKKVFTEMKREH-VLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSA 543
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA--DKS 467
G D Y +L+ A K + A +L+ +M K + N+ + + F A D+S
Sbjct: 544 GLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRS 603
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL----NSSIYFFCKGKM--IGDALKI 521
A +++ SL S A S + E + +L N+ C+ M + L++
Sbjct: 604 ADYSNGGSLPFSSS-ALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEV 662
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556
+R+M +++I+P V TF ++ S + D ++L
Sbjct: 663 FRKMHQLEIKPNVVTFSAILNACSRCNSFEDASML 697
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 109/268 (40%), Gaps = 26/268 (9%)
Query: 368 LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK 427
++K+E + L S +I L + G + A I + G+ + +L++AY +
Sbjct: 221 FAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGR 280
Query: 428 VKMFREAEALLKQMRKSCLVQNLSCEMVVSE-------RFSEVA------------DKSA 468
+ EA ++ M++ L NL V + F +VA
Sbjct: 281 SGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRI 340
Query: 469 SFTDTSSLMDKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+F ++ + L A +L EM ++ N+ + CKG + A +I +M
Sbjct: 341 TFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQM 400
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ 585
+I P V ++ ++ G + + + L+G+++ +A+ R Y TLL + +
Sbjct: 401 PVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL----GIALDRVSYNTLLSIYTK 456
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G E ++++ M + D + Y +
Sbjct: 457 VGRSEEALDILREMASVGIKKDVVTYNA 484
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 96/231 (41%), Gaps = 24/231 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++DA+ + G ++ A +IL M + + +Y +++ + K F EA L +MR
Sbjct: 380 LLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMR--- 436
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST---IYKL 502
+ +A S+ S+ K +E + +RE A++ +
Sbjct: 437 --------------YLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTY 482
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
N+ + + K + K++ M+ + P + T+ L+ G+S +Y++ +I R
Sbjct: 483 NALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAM----EIFR 538
Query: 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+S L LY L+ + G + +I M K+ + + + Y S
Sbjct: 539 EFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNS 589
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 88/204 (43%), Gaps = 23/204 (11%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILD 404
+ +I+G+ K G+ E L++ E G + + ++ ++G E A DIL
Sbjct: 413 STVIDGFAKAGRFDEA----LNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILR 468
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVA 464
+M G D TY +LL Y K + E + + +M++ ++ NL + + +S
Sbjct: 469 EMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYS--- 525
Query: 465 DKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
K + + A + +E + + + ++ I CK ++G A+ +
Sbjct: 526 -KGGLYKE----------AMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDE 574
Query: 525 MQEMKIRPTVETFYYLV--YGHSS 546
M + I P V T+ ++ +G S+
Sbjct: 575 MTKEGISPNVVTYNSIIDAFGRSA 598
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 133/297 (44%), Gaps = 32/297 (10%)
Query: 348 AKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406
+ LI + K G +S LSWL ++ G+ L S++I+ +L A I +
Sbjct: 194 STLITSFGKEGMFDSALSWL--QKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRL 251
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN-LSCEMVVS-------- 457
+ +G D Y S++ Y K K+FREA L+K+M ++ ++ N +S ++S
Sbjct: 252 KRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKF 311
Query: 458 ----ERFSEVADKSASF--------TDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
F+E+ + + + D +D A+ L +R+ + N+
Sbjct: 312 LEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTI 371
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL--VYGHSSLEMYRDITILWGDIKRN 563
+ + + ++ G+A+ ++R MQ I V T+ + +YG ++E + ++ R
Sbjct: 372 LRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYG-KTMEHEKATNLVQEMQSRG 430
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHK 620
IE + Y T++ + + G +R + ++ + +D+++Y++ + + +
Sbjct: 431 IEPNAIT-----YSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYER 482
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/302 (19%), Positives = 124/302 (41%), Gaps = 40/302 (13%)
Query: 363 LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422
L W+ K F + + +V+ A + AH + D+M D TY +L+
Sbjct: 142 LDWVHEEAKYTPSVFAYNVVLRNVLRA----KQFDIAHGLFDEMRQRALAPDRYTYSTLI 197
Query: 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDK--- 479
T++ K MF A + L++M + +S ++V+ E++ + ++ S+ +
Sbjct: 198 TSFGKEGMFDSALSWLQKMEQD----RVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKR 253
Query: 480 ----SDL------------------AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGD 517
DL A LI+EM E L ++ + + + +
Sbjct: 254 SGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLE 313
Query: 518 ALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDIT-ILWGDIKRNIESGVLAVSRDLY 576
AL ++ M+E+ + T ++ + L+M ++ + W K +IE V++ Y
Sbjct: 314 ALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVS-----Y 368
Query: 577 ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQ 636
T+L + + F + + M+++++ + + Y + +K + K +N E Q
Sbjct: 369 NTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNT-MIKIYGKTMEHEKATNLVQEMQ 427
Query: 637 SK 638
S+
Sbjct: 428 SR 429
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/410 (19%), Positives = 162/410 (39%), Gaps = 51/410 (12%)
Query: 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIIL--------------AQ 220
P+ +N+++ R G + + M + G+ + ++ I+ A
Sbjct: 375 PNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAM 434
Query: 221 IHEMN---CQRDELKKFKCYIDQLS-TPFAHHYQQFYESLLSLHFKFDDIDAAGELILDM 276
EM+ C DE+ F ID L + YE +L + + I +
Sbjct: 435 FEEMDYKVCTPDEIT-FCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFF 493
Query: 277 NRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKM----EGKQEL 332
N R ++D K Y I N C LQ++ + D + K +G+
Sbjct: 494 NHGR--------KEDGHKIYKDMI---NQNCSPDLQLLNTYM--DCMFKAGEPEKGRAMF 540
Query: 333 VLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ 392
+ + + R+ + LI+G K G +E L S+K E ++ + VID +
Sbjct: 541 EEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMK-EQGCVLDTRAYNIVIDGFCK 599
Query: 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
G + A+ +L++M+ G TY S++ K+ EA L ++ + + N+
Sbjct: 600 CGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVI 659
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
+ + F +V + D A +++E+ ++ +Y NS + K
Sbjct: 660 YSSLIDGFGKVG--------------RIDEAYLILEELMQKGLTPNLYTWNSLLDALVKA 705
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
+ I +AL ++ M+E+K P T+ L+ G + + + W ++++
Sbjct: 706 EEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQK 755
Score = 39.7 bits (91), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 86/214 (40%), Gaps = 25/214 (11%)
Query: 350 LINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
LI G+ K G+ +S LS LL K + L + ID+ ++G ++ A ++E
Sbjct: 209 LIRGFAKEGRVDSALS--LLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEA 266
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREA----EALLKQMRKSC------LVQNLSCEMVVSE 458
G D TY S++ K EA E L K R C ++ E
Sbjct: 267 NGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDE 326
Query: 459 RFSEVADKSASFTDTSSL-----------MDKSDLAESLIQEMREEAALSTIYKLNSSIY 507
+S + + A + S + M K D A + +EM+++AA + N I
Sbjct: 327 AYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAA-PNLSTYNILID 385
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
C+ + A ++ MQ+ + P V T +V
Sbjct: 386 MLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMV 419
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/302 (18%), Positives = 137/302 (45%), Gaps = 27/302 (8%)
Query: 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL 393
L NG L ++ M ++ + + G+ +E +++ ++ + + T+ + V++ ++L
Sbjct: 137 LLANGNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITM-NCVLEIAVEL 195
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSC 452
G +E A ++ D+M + G DS++YK ++ ++ +EA+ L M ++ + N +C
Sbjct: 196 GLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATC 255
Query: 453 EMVVSE------------RFSEVADKS--ASFTDTSSLMD----KSDLAES--LIQEMRE 492
++++ F ++ D + + +SL+D K + ++ +++EM
Sbjct: 256 TLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVR 315
Query: 493 EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM-QEMKIRPTVETFYYLVYGHSSLEMYR 551
+Y + I CK A +++ ++ + +P V T+ ++ G+ +
Sbjct: 316 NGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLN 375
Query: 552 DITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+L+ +K E G+ + + Y TL+ + G F R E++ M + + Y
Sbjct: 376 RAEMLFSRMK---EQGLFP-NVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTY 431
Query: 612 KS 613
+
Sbjct: 432 NA 433
Score = 33.5 bits (75), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 79/214 (36%), Gaps = 22/214 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LING+ K G ++ L+++ + + ID+L + A+++L+
Sbjct: 399 LINGHCKAGSFGR-AYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSC 457
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV------------S 457
G D TY L+ K +A A +M K+ ++ ++ S
Sbjct: 458 GLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKES 517
Query: 458 ERFSEVA------DKSASFTDTSSLMDKS---DLAESLIQEMREEAALSTIYKLNSSIYF 508
ER ++ ++T S K DLA M+ + + S I
Sbjct: 518 ERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISG 577
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
CK M+ +A K+Y M + + P T L Y
Sbjct: 578 LCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAY 611
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 123/285 (43%), Gaps = 26/285 (9%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ING K G+ +L+ LL+ ++ + + S VID+L + ++ A ++ +M+
Sbjct: 209 GAVINGLCKRGE-PDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMD 267
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC------------EMV 455
G D TY SL++ + +A LL M + + N+ +++
Sbjct: 268 NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLI 327
Query: 456 VSER-FSEVADKSA--------SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506
+E+ F E+ +S S + + D+ D A+ + M + L + N+ I
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566
FCK K + D ++++R M + T+ L++G + +++ K+ +
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVF---KQMVSD 444
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
GV + Y TLL + G E+ M V Y++K M D Y
Sbjct: 445 GVHP-NIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTY 488
Score = 37.0 bits (84), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
A +++ +M + +I LNS + FC G I +A+ + +M EM +P TF LV
Sbjct: 118 FALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLV 177
Query: 542 YG 543
+G
Sbjct: 178 HG 179
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 117/286 (40%), Gaps = 27/286 (9%)
Query: 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
K++NGY K G E + + I + T S +I Q L++A + ++M L
Sbjct: 223 KMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTS-LIMGYCQRKDLDSAFKVFNEMPL 281
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVV------SERFSE 462
G + Y L+ + EA L +M+ + V+ SER SE
Sbjct: 282 KGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSE 341
Query: 463 VADKSASFTDT---------SSLMD------KSDLAESLIQEMREEAALSTIYKLNSSIY 507
+ +T + L+D K + A L+ +M E+ + + N+ I
Sbjct: 342 ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALIN 401
Query: 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESG 567
+CK MI DA+ + M+ K+ P T+ L+ G+ +++ + +L ++R +
Sbjct: 402 GYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPD 461
Query: 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
V+ Y +L+ + G F+ ++ M + + D+ Y S
Sbjct: 462 VVT-----YNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTS 502
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 22/219 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI+G + G N + ++ LLS+ + + + +ID+L + +E A D+ D +E
Sbjct: 468 LIDGQCRSG-NFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQK 526
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-RKSCLVQNLSCEMVV------------ 456
G + Y +L+ Y K EA +L++M K+CL +L+ ++
Sbjct: 527 GVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEA 586
Query: 457 ---SERFSEVADKSASFTDT---SSLMDKSDL--AESLIQEMREEAALSTIYKLNSSIYF 508
E+ ++ + TDT L+ D A S Q+M + + I
Sbjct: 587 TLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQT 646
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL 547
+C+ + DA + +M+E + P + T+ L+ G+ L
Sbjct: 647 YCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDL 685
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 114/268 (42%), Gaps = 26/268 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGF-LEAAHDILDDME 407
LIN Y ++G+ LL +K E S S L + VI+A + G E + +M
Sbjct: 182 LINAYGRNGRYETSLELLDRMKNEKIS--PSILTYNTVINACARGGLDWEGLLGLFAEMR 239
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
G D TY +LL+A + EAE + + M +V +L+ + E F +
Sbjct: 240 HEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGK----- 294
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ + + L+ EM +L I N + + K I +A+ ++ +MQ
Sbjct: 295 ---------LRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQA 345
Query: 528 MKIRPTVETFYYLV--YGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ 585
P T+ L+ +G S Y D+ L+ ++K + A Y L+ F +
Sbjct: 346 AGCTPNANTYSVLLNLFGQSG--RYDDVRQLFLEMKSSNTDPDAAT----YNILIEVFGE 399
Query: 586 GGYFERVMEVIGYMKKQNMYVDKLMYKS 613
GGYF+ V+ + M ++N+ D Y+
Sbjct: 400 GGYFKEVVTLFHDMVEENIEPDMETYEG 427
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 102/277 (36%), Gaps = 60/277 (21%)
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
T S +++ +L LE D+L +M G D T+Y LL AY K +EA + Q
Sbjct: 283 TTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQ 342
Query: 441 MRKSCLVQNLSCEMVVSERFSEVA---DKSASFTDTSSLMDKSDLAE------------- 484
M+ + N + V+ F + D F + S D A
Sbjct: 343 MQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGY 402
Query: 485 -----SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI------------------ 521
+L +M EE + I+ KG + DA KI
Sbjct: 403 FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTG 462
Query: 522 -----------------YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
+ M E+ P++ETF+ L+Y + + ++ + + R +
Sbjct: 463 VIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAI---LSRLV 519
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
+SG+ +RD + + + QGG FE ++ M+K
Sbjct: 520 DSGI-PRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEK 555
Score = 37.4 bits (85), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 103/262 (39%), Gaps = 29/262 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I L + G L+ ++ D+M G +Y +L+ AY + + + LL +M+
Sbjct: 147 MISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKN-- 204
Query: 446 LVQNLSCEMVVSERFSEVADKSA-SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504
+ +S ++ ++ V + A D L+ L EMR E I N
Sbjct: 205 --EKISPSILT---YNTVINACARGGLDWEGLL-------GLFAEMRHEGIQPDIVTYN- 251
Query: 505 SIYFFCKGKMIGD-ALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
++ C + +GD A ++R M + I P + T+ +LV L + L G++
Sbjct: 252 TLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMA-- 309
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVI------GYMKKQNMY--VDKLMYKSEF 615
SG Y LL + + G + M V G N Y + L +S
Sbjct: 310 --SGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGR 367
Query: 616 LKHHKHLYRRLKVSNARTEAQS 637
+ L+ +K SN +A +
Sbjct: 368 YDDVRQLFLEMKSSNTDPDAAT 389
>sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein At1g19720
OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1
Length = 894
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 18/208 (8%)
Query: 354 YKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413
Y ++GK+ E L+ ++KE S G T + +I QLG +AA D++ ME G
Sbjct: 257 YCQNGKHEEAVELVKEMEKEGISPGLVTW-NILIGGYNQLGKCDAAMDLMQKMETFGITA 315
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN----------LSCEMVVSE--RFS 461
D T+ ++++ M +A + ++M + +V N SC V+++
Sbjct: 316 DVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVH 375
Query: 462 EVADKSASFTDT---SSLMDKSDLAESL--IQEMREEAALSTIYKLNSSIYFFCKGKMIG 516
+A K D +SL+D L +++ + +Y NS I +C+ G
Sbjct: 376 SIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCG 435
Query: 517 DALKIYRRMQEMKIRPTVETFYYLVYGH 544
A +++ RMQ+ +RP + T+ ++ G+
Sbjct: 436 KAYELFTRMQDANLRPNIITWNTMISGY 463
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 104/237 (43%), Gaps = 23/237 (9%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
M+K++ K GK ++ L ++K + ++ + ++DAL++ +E AH++
Sbjct: 205 TMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLK 264
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD 465
+ P D+ T+ L+ + K + F +A A++ M+ V + ++V F E
Sbjct: 265 LFDTIKP-DARTFNILIHGFCKARKFDDARAMMDLMK----VTEFTPDVVTYTSFVEAYC 319
Query: 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
K F + ++ +EMRE + ++ K K + +AL +Y +M
Sbjct: 320 KEGDFRRVNEML----------EEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKM 369
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD--LYETLL 580
+E P + + L++ S ++D ++ D+ V RD +Y T++
Sbjct: 370 KEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQ------GVRRDVLVYNTMI 420
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 119/282 (42%), Gaps = 28/282 (9%)
Query: 354 YKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413
+ ++G +SE+S + +K+ E + +I A + G E A + M AG
Sbjct: 464 FGQNGMDSEVSGVFKEMKRAGF-VPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTP 522
Query: 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLS-CEMV---------------V 456
D +TY ++L A + M+ ++E +L +M C L+ C ++
Sbjct: 523 DLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLA 582
Query: 457 SERFSEVADKSASFTDTSSLM-DKSDL---AESLIQEMREEAALSTIYKLNSSIYFFCKG 512
E +S V + A T L+ K DL AE E++E I LNS + + +
Sbjct: 583 EEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRR 642
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS-SLEMYRDITILWGDIKRNIESGVLAV 571
+M+ A + M+E P++ T+ L+Y HS S + + IL + + I+ +++
Sbjct: 643 QMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIIS- 701
Query: 572 SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
Y T++ + + + M+ + D + Y +
Sbjct: 702 ----YNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNT 739
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 101/233 (43%), Gaps = 24/233 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I A + G L+ A ++ + M G D TY +LL+ + + A ++ ++MR
Sbjct: 353 NSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRN 412
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST-IYKL 502
+ N+ C F ++ FT+ + D+ ++ LS I
Sbjct: 413 AGCKPNI-CTF---NAFIKMYGNRGKFTEMMKIFDEINV-----------CGLSPDIVTW 457
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
N+ + F + M + +++ M+ P ETF L+ +S + ++ +R
Sbjct: 458 NTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVY---RR 514
Query: 563 NIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+++G V+ DL Y T+L +GG +E+ +V+ M+ ++L Y S
Sbjct: 515 MLDAG---VTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCS 564
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/319 (19%), Positives = 125/319 (39%), Gaps = 34/319 (10%)
Query: 297 LISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKK 356
L S+ PN G ++ EL E EL+ F G H +A
Sbjct: 103 LRSLIEPNFDSGQLDSVLSELFEPFKDKPESTSSELLAFLKGLGFHKKFDLAL------- 155
Query: 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST 416
W + +K++ S ++++ + +I L + G + +A ++ + ++ G +D
Sbjct: 156 ----RAFDWFMK--QKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVY 209
Query: 417 TYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSL 476
+Y SL++A+ +REA + K+M + L V+ F ++ T
Sbjct: 210 SYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKIT----- 264
Query: 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
SL+++M+ + Y N+ I +G + +A +++ M+ T
Sbjct: 265 --------SLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVT 316
Query: 537 FYYL--VYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVME 594
+ L VYG S ++ + ++ N S + Y +L+ + + G + ME
Sbjct: 317 YNALLDVYGKSHRP--KEAMKVLNEMVLNGFSPSIVT----YNSLISAYARDGMLDEAME 370
Query: 595 VIGYMKKQNMYVDKLMYKS 613
+ M ++ D Y +
Sbjct: 371 LKNQMAEKGTKPDVFTYTT 389
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 99/222 (44%), Gaps = 18/222 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
V++ L + G +E + ++ + + G ++ TY +++ AY K + F E +LK M+K
Sbjct: 230 VVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDG 289
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+V N V E++ K+ +D AE L EMRE S ++ S
Sbjct: 290 VVYN----KVTYTLLMELSVKNGKMSD----------AEKLFDEMRERGIESDVHVYTSL 335
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I + C+ + A ++ + E + P+ T+ L+ G + IL + ++
Sbjct: 336 ISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNE----MQ 391
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
S + +++ ++ TL+ + + G + + M+++ D
Sbjct: 392 SKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQAD 433
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID + ++G + AA ++++M+ G + + +L+ Y + M EA + M +
Sbjct: 370 LIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKG 429
Query: 446 LVQNL-SCEMVVS-----ERFSE------------VADKSASFTDTSSLMDKS---DLAE 484
++ +C + S +R+ E V + S+T+ + K + A+
Sbjct: 430 FQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAK 489
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
L EM + N IY +CK I +A K+ M+ + P T+ L++G
Sbjct: 490 RLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGE 549
Score = 33.5 bits (75), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 104/264 (39%), Gaps = 31/264 (11%)
Query: 369 SIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV 428
IK E +++ + +I+A ++ +L M+ G + TY L+ K
Sbjct: 254 GIKPEAYTY------NTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKN 307
Query: 429 KMFREAEALLKQMRK----------------SCLVQNLSCEMVVSERFSEVADKSASFT- 471
+AE L +MR+ +C N+ ++ + +E +S+T
Sbjct: 308 GKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTY 367
Query: 472 ----DTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
D + + AE L+ EM+ + T N+ I +C+ M+ +A IY M++
Sbjct: 368 GALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQ 427
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
+ V T + + L+ Y D W + R +E GV +S Y L+ + + G
Sbjct: 428 KGFQADVFTCNTIASCFNRLKRY-DEAKQW--LFRMMEGGV-KLSTVSYTNLIDVYCKEG 483
Query: 588 YFERVMEVIGYMKKQNMYVDKLMY 611
E + M + + + + Y
Sbjct: 484 NVEEAKRLFVEMSSKGVQPNAITY 507
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 103/253 (40%), Gaps = 33/253 (13%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID L + G L+ A ++ ++ME+ G + TY L+ + + + LL+ M K
Sbjct: 267 SIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK 326
Query: 444 SCLVQNLSCEMVVSERFSE------------------VADKSASFTDTSSLMDKS----- 480
+ N+ V+ + F + +A + ++T SL+D
Sbjct: 327 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYT---SLIDGFCKENH 383
Query: 481 -DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539
D A ++ M + I N I +CK I D L+++R+M + T+
Sbjct: 384 LDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNT 443
Query: 540 LVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGY 598
L+ G L L+ + + R + ++ Y+ LL G E+ +E+
Sbjct: 444 LIQGFCELGKLNVAKELFQEMVSRKVPPNIVT-----YKILLDGLCDNGESEKALEIFEK 498
Query: 599 MKKQNMYVDKLMY 611
++K M +D +Y
Sbjct: 499 IEKSKMELDIGIY 511
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 136/328 (41%), Gaps = 61/328 (18%)
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
L+ +A A LI GY + + LL+ +KK + T + V+ + G L+ A
Sbjct: 378 LIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGT-VVKGMCSSGDLDGA 436
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC--EMVVS 457
++I+ +M +G + Y +L+ + + F +A +LK+M++ + ++ C +++
Sbjct: 437 YNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIG 496
Query: 458 ERFSEVADKSASF-----------------TDTSSLMDKSDLA--ESLIQEMREEAALST 498
++ D++ SF S ++ S+ A + ++EMRE L
Sbjct: 497 LSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPN 556
Query: 499 IYKLNSSIYFFC-KGKMI----------------------------------GDALKIYR 523
I +C KGK+I DA +I+R
Sbjct: 557 KVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFR 616
Query: 524 RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNF 583
M+ I P V ++ L+ G S L + + ++ ++ +E G L + +Y LL F
Sbjct: 617 EMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM---VEEG-LTPNVIIYNMLLGGF 672
Query: 584 LQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ G E+ E++ M + ++ + + Y
Sbjct: 673 CRSGEIEKAKELLDEMSVKGLHPNAVTY 700
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 15/202 (7%)
Query: 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
N + LI+G K G+N++ + L+ H + + I + + G +E A +
Sbjct: 312 NHTYSLLIDGLLK-GRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALF 370
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
D M +G + Y SL+ Y + K R+ LL +M+K +V + + V
Sbjct: 371 DGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIV-------ISPYTYGTV 423
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYR 523
S D D A ++++EM + + I F + GDA+++ +
Sbjct: 424 VKGMCSSGDL-------DGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLK 476
Query: 524 RMQEMKIRPTVETFYYLVYGHS 545
M+E I P + + L+ G S
Sbjct: 477 EMKEQGIAPDIFCYNSLIIGLS 498
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 18/228 (7%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID L ++ LE A +L +M+ G +D+ TY L+ K + A+ L+ +M
Sbjct: 283 LIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM---- 338
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
+ ++ + + + V K +L D +A LI + + A+L
Sbjct: 339 VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGM-IASGLIPQAQAYASL--------- 388
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565
I +C+ K + ++ M++ I + T+ +V G S D+ + +K I
Sbjct: 389 IEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCS---SGDLDGAYNIVKEMIA 445
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
SG + +Y TL+ FLQ F M V+ MK+Q + D Y S
Sbjct: 446 SGCRP-NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492
Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 108/261 (41%), Gaps = 22/261 (8%)
Query: 350 LINGYKKHGKNSELSWLL--LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
L+ G+ + G+ + LL +S+K H + T C+ +ID + G L A + D+M+
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPN--AVTYCT-IIDGYCKSGDLAEAFRLFDEMK 724
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
L G DS Y +L+ ++ A + +K C +++ F
Sbjct: 725 LKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVF------- 777
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
F T K+++ L+ + N I + CK + A +++ +MQ
Sbjct: 778 -KFGKTEL---KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN 833
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQG 586
+ PTV T+ L+ G+ + ++ ++ + I IE + +Y ++ FL+
Sbjct: 834 ANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHI-----MYSVIINAFLKE 888
Query: 587 GYFERVMEVIGYMKKQNMYVD 607
G + + ++ M +N D
Sbjct: 889 GMTTKALVLVDQMFAKNAVDD 909
Score = 39.3 bits (90), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 61/301 (20%), Positives = 124/301 (41%), Gaps = 45/301 (14%)
Query: 171 ELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDE 230
E + P+ +I+N++L R G K + +++ MS G+ +A + I + C+ +
Sbjct: 656 EGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNA---VTYCTIIDGYCKSGD 712
Query: 231 LKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNP---- 286
L + D++ Y +L+ + +D++ A + + P
Sbjct: 713 LAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNAL 772
Query: 287 -----KLRQDAQKPYLIS---------IGSPNLRCGLKLQIMPELLEKDSILKMEGKQEL 332
K + K +++ G PN + IM + L K+ +E +EL
Sbjct: 773 INWVFKFGKTELKTEVLNRLMDGSFDRFGKPN---DVTYNIMIDYLCKEG--NLEAAKEL 827
Query: 333 V-LFRNGKLLHSNRAMAKLINGYKKHGKNSEL-----SWLLLSIKKEHHSFGESTLCSDV 386
+N L+ + L+NGY K G+ +E+ + I+ +H + S +
Sbjct: 828 FHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMY------SVI 881
Query: 387 IDALIQLGFLEAAHDILDDMELAGHPMDS------TTYKSLLTAYYKVKMFREAEALLKQ 440
I+A ++ G A ++D M A + +D +T ++LL+ + KV AE +++
Sbjct: 882 INAFLKEGMTTKALVLVDQM-FAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMEN 940
Query: 441 M 441
M
Sbjct: 941 M 941
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 14/164 (8%)
Query: 381 TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440
LC+ +I+ + G + A M G D+ TY L+ +K +AE + ++
Sbjct: 558 VLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617
Query: 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500
MR + ++ V+ FS++ + M K A S+ EM EE +
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGN-----------MQK---ASSIFDEMVEEGLTPNVI 663
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
N + FC+ I A ++ M + P T+ ++ G+
Sbjct: 664 IYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGY 707
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 103/262 (39%), Gaps = 19/262 (7%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++NG + G S L+ LL +E + + S +ID+L + G ++AA + +ME
Sbjct: 199 IVNGICRSGDTS-LALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETK 257
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469
G TY SL+ K + + LLK M +V N+ V+ + F +
Sbjct: 258 GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG----- 312
Query: 470 FTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529
K A L +EM I N+ + +C + +A + M K
Sbjct: 313 ---------KLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363
Query: 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589
P + TF L+ G+ ++ D ++ RNI L + Y L+ F Q G
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVF----RNISKRGLVANAVTYSILVQGFCQSGKI 419
Query: 590 ERVMEVIGYMKKQNMYVDKLMY 611
+ E+ M + D + Y
Sbjct: 420 KLAEELFQEMVSHGVLPDVMTY 441
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 84/233 (36%), Gaps = 25/233 (10%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
L A+++LD M D T+ SL+ Y VK + + + + K LV N +
Sbjct: 349 LSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 408
Query: 456 VSERFS---------EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS- 505
+ + F E+ + S +M L + L + E AL L S
Sbjct: 409 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468
Query: 506 -----------IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDIT 554
I CKG + DA ++ + ++P V T+ ++ G +
Sbjct: 469 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEAN 528
Query: 555 ILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607
IL R +E A + Y TL+ L+ G ++I MK D
Sbjct: 529 ILL----RKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 577
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 92/213 (43%), Gaps = 20/213 (9%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
++D M G+ D+ T+ +L+ + EA AL+ +M + NL VV
Sbjct: 177 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLC 236
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
+ D +DLA +L+ +M + + N+ I CK + + DAL +
Sbjct: 237 KRGD--------------TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNL 282
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLL 580
++ M+ IRP V T+ L+ S + D + L D I++ I ++ + L+
Sbjct: 283 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT-----FNALI 337
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
F++ G F ++ M K+++ D Y S
Sbjct: 338 DAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNS 370
Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 122/294 (41%), Gaps = 44/294 (14%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++NG K G +++L+ LL+ + + + + +ID+L + ++ A ++ +ME
Sbjct: 231 VVNGLCKRG-DTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK 289
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC------------EMVVS 457
G + TY SL++ + +A LL M + + NL + V +
Sbjct: 290 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA 349
Query: 458 ERFSEVADKSA---------SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
E+ + K + S + + D+ D A+ + + M + + N+ I
Sbjct: 350 EKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKG 409
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-------IK 561
FCK K + D +++R M + T+ L+ G ++ D GD K
Sbjct: 410 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG-----LFHD-----GDCDNAQKVFK 459
Query: 562 RNIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + G V D+ Y LL G E+ +EV YM+K + +D +Y +
Sbjct: 460 QMVSDG---VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 510
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Query: 412 PMDSTT-YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASF 470
P+ S + LL+A K+K F +L ++M++ +V L ++ F + S
Sbjct: 81 PLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQIS--- 137
Query: 471 TDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI 530
LA +L+ +M + +I L+S + +C GK I DA+ + +M EM
Sbjct: 138 -----------LALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGY 186
Query: 531 RPTVETFYYLVYG 543
RP TF L++G
Sbjct: 187 RPDTITFTTLIHG 199
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 109/249 (43%), Gaps = 25/249 (10%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID + + G +EAA + ++M+ G D+ TY S++ + KV + ++M+ C
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327
Query: 446 L---------VQNLSCEM----VVSERFSEVADKS--ASFTDTSSLMD---KSDLAESLI 487
+ N C+ + E + E+ + S+L+D K + + I
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAI 387
Query: 488 Q---EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ +MR + Y S I CK + DA ++ M ++ + V T+ L+ G
Sbjct: 388 KFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGL 447
Query: 545 SSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
E ++ L+G + +GV+ + Y L+ F++ +R +E++ +K + +
Sbjct: 448 CDAERMKEAEELFGKMD---TAGVIP-NLASYNALIHGFVKAKNMDRALELLNELKGRGI 503
Query: 605 YVDKLMYKS 613
D L+Y +
Sbjct: 504 KPDLLLYGT 512
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 97/474 (20%), Positives = 187/474 (39%), Gaps = 78/474 (16%)
Query: 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA---HSII----ILAQIHEMNC 226
+P +N+++ + G + + E M G+V D +S+I + ++ + C
Sbjct: 259 RPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVC 318
Query: 227 QRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNP 286
+E+K C D ++ Y +L++ KF G+L + + YRE
Sbjct: 319 FFEEMKDMCCEPDVIT----------YNALINCFCKF------GKLPIGLEFYRE----- 357
Query: 287 KLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRA 346
++ + KP ++S + + + K+ +++ K + + R G L+ +
Sbjct: 358 -MKGNGLKPNVVSYST-----------LVDAFCKEGMMQQAIKFYVDMRRVG-LVPNEYT 404
Query: 347 MAKLINGYKKHGKNSE---LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
LI+ K G S+ L +L + E + + L ID L ++ A ++
Sbjct: 405 YTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTAL----IDGLCDAERMKEAEELF 460
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS----------------CLV 447
M+ AG + +Y +L+ + K K A LL +++ C +
Sbjct: 461 GKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSL 520
Query: 448 QNLSCEMVVSERFSEVADKSASFTDTSSLMD----KSDLAESL--IQEMREEAALSTIYK 501
+ + VV E K+ S T+ LMD + E L + EM+E T+
Sbjct: 521 EKIEAAKVVMNEMKECGIKANSLIYTT-LMDAYFKSGNPTEGLHLLDEMKELDIEVTVVT 579
Query: 502 LNSSIYFFCKGKMIGDALKIYRRM-QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
I CK K++ A+ + R+ + ++ F ++ G T L+
Sbjct: 580 FCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLF--- 636
Query: 561 KRNIESGVLAVSRDLYETLL-LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
++ ++ G L R Y +L+ NF QG E + + M + M +D L Y S
Sbjct: 637 EQMVQKG-LVPDRTAYTSLMDGNFKQGNVLE-ALALRDKMAEIGMKLDLLAYTS 688
Score = 39.7 bits (91), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 71/191 (37%), Gaps = 14/191 (7%)
Query: 372 KEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMF 431
K F ++ C+ ++ +LG + DM AG TY ++ K
Sbjct: 219 KRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDV 278
Query: 432 REAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491
A L ++M+ LV + + + F +V + D +EM+
Sbjct: 279 EAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVG--------------RLDDTVCFFEEMK 324
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYR 551
+ + N+ I FCK + L+ YR M+ ++P V ++ LV M +
Sbjct: 325 DMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQ 384
Query: 552 DITILWGDIKR 562
+ D++R
Sbjct: 385 QAIKFYVDMRR 395
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 120/276 (43%), Gaps = 26/276 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++NG K G + +L++ LL+ + + S VID+L + + A ++ +ME
Sbjct: 231 VVNGLCKRG-DIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 289
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC------------EMVVS 457
G + TY SL++ + + +A LL M + + N+ ++V +
Sbjct: 290 GVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEA 349
Query: 458 ER-FSEVADKS--------ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
E+ + E+ +S +S + + D+ D A+ + + M + + N+ I
Sbjct: 350 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLING 409
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568
FCK K I + ++++R M + + T+ L++G RD K+ + GV
Sbjct: 410 FCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQA---RDCDNAQMVFKQMVSDGV 466
Query: 569 LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604
+ Y TLL + G E+ M V Y+++ M
Sbjct: 467 HP-NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 501
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 20/213 (9%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
++D M G+ D+ T+ +L+ + EA AL+ +M + NL VV
Sbjct: 177 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLC 236
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
+ D DLA +L+ +M + + ++ I CK + DAL +
Sbjct: 237 KRGD--------------IDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNL 282
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLL 580
+ M+ +RP V T+ L+ + E + D + L D I+R I V+ + L+
Sbjct: 283 FTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVT-----FNALI 337
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
F++ G ++ M K+++ D Y S
Sbjct: 338 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 370
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477
+ LL+A K+K F +L ++M++ + NL ++ F + S
Sbjct: 88 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQIS---------- 137
Query: 478 DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
LA +L+ +M + +I L+S + +C GK I DA+ + +M EM RP TF
Sbjct: 138 ----LALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITF 193
Query: 538 YYLVYG 543
L++G
Sbjct: 194 TTLIHG 199
Score = 41.6 bits (96), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 14/128 (10%)
Query: 416 TTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSS 475
TY +L+ + K K E L ++M + LV N + F + D
Sbjct: 401 VTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARD---------- 450
Query: 476 LMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVE 535
D A+ + ++M + I N+ + CK + A+ ++ +Q K+ PT+
Sbjct: 451 ----CDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIY 506
Query: 536 TFYYLVYG 543
T+ ++ G
Sbjct: 507 TYNIMIEG 514
Score = 32.7 bits (73), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
M K DL SL ++M+ +Y N I FC+ I AL + +M ++ P++ T
Sbjct: 98 MKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVT 157
Query: 537 FYYLVYGH 544
L+ G+
Sbjct: 158 LSSLLNGY 165
>sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770,
mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2
SV=2
Length = 940
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 15/196 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ +IN K GK E LLL +E + + ++D+L + A + M
Sbjct: 265 SSIINRLCKGGKVLE-GGLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMV 323
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
+ G P+D Y L+ +K REAE K + + V N+ + + + D S
Sbjct: 324 VRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLS 383
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
+ AE +I +M E++ + + +S I + K M+ +A+ + R+M++
Sbjct: 384 S--------------AEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMED 429
Query: 528 MKIRPTVETFYYLVYG 543
+ P T+ ++ G
Sbjct: 430 QNVVPNGFTYGTVIDG 445
Score = 37.7 bits (86), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 29/176 (16%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
VI L + G + A+ L +M G D+ +Y +L+ + KV F A+AL+ ++ +
Sbjct: 169 VISGLCEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEISELN 228
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST----IYK 501
L+ T +++ S I+E + +S +
Sbjct: 229 LI-------------------------THTILLSSYYNLHAIEEAYRDMVMSGFDPDVVT 263
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
+S I CKG + + + R M+EM + P T+ LV +YR L+
Sbjct: 264 FSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALY 319
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 101/230 (43%), Gaps = 28/230 (12%)
Query: 384 SDVIDALIQLGFLEAAHDILDDME-LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442
S +I+ L + G + +L +ME ++ +P + TY +L+ + +K ++R A AL QM
Sbjct: 265 SSIINRLCKGGKVLEGGLLLREMEEMSVYP-NHVTYTTLVDSLFKANIYRHALALYSQM- 322
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL--AESLIQEMREEAALSTIY 500
+V+ + ++VV ++ + D L DL AE + + E+ + +
Sbjct: 323 ---VVRGIPVDLVV---YTVLMD---------GLFKAGDLREAEKTFKMLLEDNQVPNVV 367
Query: 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560
+ + CK + A I +M E + P V T+ ++ G+ M + L
Sbjct: 368 TYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLL--- 424
Query: 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK----KQNMYV 606
R +E + + Y T++ + G E +E+ M+ ++N Y+
Sbjct: 425 -RKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYI 473
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 54/271 (19%), Positives = 114/271 (42%), Gaps = 20/271 (7%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
+N + L+N K+ G+ E+ L+ + + + + S +ID + G EAA
Sbjct: 470 NNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTS-LIDVFFKGGDEEAALAW 528
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462
++M+ G P D +Y L++ K A+ K MR+ + +++ F+
Sbjct: 529 AEEMQERGMPWDVVSYNVLISGMLKFGKV-GADWAYKGMREKGIEPDIAT-------FNI 580
Query: 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIY 522
+ + D+ ++ L +M+ ++ N + C+ + +A+ I
Sbjct: 581 MMNSQRKQGDSEGIL-------KLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHIL 633
Query: 523 RRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLN 582
+M M+I P + T Y ++ +S + R I + S + +SR +Y TL+
Sbjct: 634 NQMMLMEIHPNLTT--YRIFLDTSSKHKRADAIF--KTHETLLSYGIKLSRQVYNTLIAT 689
Query: 583 FLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ G ++ V+G M+ + D + + S
Sbjct: 690 LCKLGMTKKAAMVMGDMEARGFIPDTVTFNS 720
Score = 33.5 bits (75), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+I L +LG + A ++ DME G D+ T+ SL+ Y+ R+A + M ++
Sbjct: 686 LIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAG 745
Query: 446 LVQNLS 451
+ N++
Sbjct: 746 ISPNVA 751
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 33/212 (15%)
Query: 363 LSWL-----LLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTT 417
+SWL L I + ++F + +I AL ++AA ++ D+M G + T
Sbjct: 131 VSWLYKDMVLCGIAPQTYTF------NLLIRALCDSSCVDAARELFDEMPEKGCKPNEFT 184
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477
+ L+ Y K + + LL M E F + +K T SS
Sbjct: 185 FGILVRGYCKAGLTDKGLELLNAM----------------ESFGVLPNKVIYNTIVSSFC 228
Query: 478 --DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI----R 531
++D +E ++++MREE + I NS I CK + DA +I+ M+ + R
Sbjct: 229 REGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPR 288
Query: 532 PTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
P T+ ++ G + + D L+ I+ N
Sbjct: 289 PNSITYNLMLKGFCKVGLLEDAKTLFESIREN 320
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 45/230 (19%)
Query: 356 KHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM-- 413
K G+ SE LL + ++ + ++ C+ ++D L G L+ A +I+ M + G
Sbjct: 443 KMGRISEAEELLRKMNEKGYGL-DTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALG 501
Query: 414 ---------------------DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC 452
D TY +LL K F EA+ L +M L +
Sbjct: 502 NLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVA 561
Query: 453 EMVVSERFSEVADKSASF----------------TDTSSLMD---KSDLAE--SLIQEMR 491
+ F + S++F T S ++ K+ + E L+ EM+
Sbjct: 562 YNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMK 621
Query: 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
E+ I N++I + C+G+ + DA + M + I P V +F YL+
Sbjct: 622 EKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLI 671
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 114/285 (40%), Gaps = 43/285 (15%)
Query: 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVI-DALIQLGFLEAAHDILDDMELA 409
+ G +HGK E +L + + G S +++ D L +LG L A I+ M+
Sbjct: 333 LQGLVRHGKFIEAETVLKQMTDK--GIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRN 390
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQ-MRKSCLVQNLSCEMVVSERFSEVADKSA 468
G D+ TY LL Y V A++LL++ MR +CL +C +++ +
Sbjct: 391 GVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWK------- 443
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
M + AE L+++M E+ N + C + A++I + M+
Sbjct: 444 --------MGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMR-- 493
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETLLLNFLQG 586
V+G ++L + I D IE+ L DL Y TLL +
Sbjct: 494 ------------VHGSAALGNLGNSYIGLVD-DSLIENNCLP---DLITYSTLLNGLCKA 537
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNA 631
G F + M + + D + Y H H ++ K+S+A
Sbjct: 538 GRFAEAKNLFAEMMGEKLQPDSVAYN--IFIH--HFCKQGKISSA 578
Score = 41.2 bits (95), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 95/207 (45%), Gaps = 33/207 (15%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++ + G + ++L+ ME G + Y ++++++ + ++E ++++MR+
Sbjct: 188 LVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEG 247
Query: 446 LVQNLSCEMVVSERFS------EVADKSASFTD---------------TSSLMDKS---- 480
LV ++ + + R S +V D S F+D T +LM K
Sbjct: 248 LVPDI---VTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKV 304
Query: 481 ---DLAESLIQEMREEAALSTIYKLNSSIYFFCK-GKMIGDALKIYRRMQEMKIRPTVET 536
+ A++L + +RE L+++ N + + GK I +A + ++M + I P++ +
Sbjct: 305 GLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFI-EAETVLKQMTDKGIGPSIYS 363
Query: 537 FYYLVYGHSSLEMYRDITILWGDIKRN 563
+ L+ G L M D + G +KRN
Sbjct: 364 YNILMDGLCKLGMLSDAKTIVGLMKRN 390
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 98/255 (38%), Gaps = 37/255 (14%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
+ID+L + + A D ++E G + TY +L+ + +A LL M K
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255
Query: 446 LVQNLSC-------------EMVVSERFSEVADKS--------ASFTDTSSLMDKSDLAE 484
+ N+ + E F E+ S +S + L D+ D A
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 315
Query: 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ M + L+ + N+ I FCK K + D +K++R M + + T+ L+ G
Sbjct: 316 QMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375
Query: 545 SSLEMYRDITILWGDIKRNIE----SGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGY 598
GD+ + E +S D+ Y LL G E+ + +
Sbjct: 376 FQA----------GDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED 425
Query: 599 MKKQNMYVDKLMYKS 613
M+K+ M +D + Y +
Sbjct: 426 MQKREMDLDIVTYTT 440
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A SL+ +M E I N+ I CK K + DA ++ ++ IRP V T+ LV
Sbjct: 174 AVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVN 233
Query: 543 GHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
G + + D L D IK+ I V+ Y LL F++ G E+ M +
Sbjct: 234 GLCNSSRWSDAARLLSDMIKKKITPNVIT-----YSALLDAFVKNGKVLEAKELFEEMVR 288
Query: 602 QNMYVDKLMYKS 613
++ D + Y S
Sbjct: 289 MSIDPDIVTYSS 300
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/241 (18%), Positives = 98/241 (40%), Gaps = 32/241 (13%)
Query: 348 AKLINGYKKHGKNSELSWLL-----LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402
+ L++ + K+GK E L +SI + ++ S +I+ L ++ A+ +
Sbjct: 264 SALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTY------SSLINGLCLHDRIDEANQM 317
Query: 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462
D M G D +Y +L+ + K K + L ++M + LV N + + F +
Sbjct: 318 FDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQ 377
Query: 463 VAD--KSASFTDT-----------------SSLMDKSDLAESLI--QEMREEAALSTIYK 501
D K+ F L D +L ++L+ ++M++ I
Sbjct: 378 AGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVT 437
Query: 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561
+ I CK + +A ++ + ++P + T+ ++ G + + ++ L+ +K
Sbjct: 438 YTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMK 497
Query: 562 R 562
+
Sbjct: 498 Q 498
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 122/294 (41%), Gaps = 44/294 (14%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
++NG K G + +L++ LL+ + + + + +ID+L + ++ A ++ +ME
Sbjct: 156 VVNGLCKRG-DIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK 214
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC------------EMVVS 457
G + TY SL++ + +A LL M + + NL + V +
Sbjct: 215 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEA 274
Query: 458 ERFSEVADKSA---------SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
E+ + K + S + + D+ D A+ + + M + + N+ I
Sbjct: 275 EKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKG 334
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-------IK 561
FCK K + D +++R M + T+ L+ G ++ D GD K
Sbjct: 335 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG-----LFHD-----GDCDNAQKVFK 384
Query: 562 RNIESGVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
+ + G V D+ Y LL G E+ +EV YM+K + +D +Y +
Sbjct: 385 QMVSDG---VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 435
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 20/213 (9%)
Query: 402 ILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461
++D M G+ D+ T+ +L+ + EA AL+ +M + NL VV
Sbjct: 102 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLC 161
Query: 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521
+ D DLA +L+ +M + + N+ I CK + + DAL +
Sbjct: 162 KRGD--------------IDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNL 207
Query: 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLL 580
++ M+ IRP V T+ L+ S + D + L D I++ I ++ + L+
Sbjct: 208 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT-----FNALI 262
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
F++ G F ++ M K+++ D Y S
Sbjct: 263 DAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNS 295
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477
+ LL+A K+K F +L ++M++ + NL ++ F + S
Sbjct: 13 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQIS---------- 62
Query: 478 DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537
LA +L+ +M + +I L+S + +C GK I DA+ + +M EM RP TF
Sbjct: 63 ----LALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITF 118
Query: 538 YYLVYG 543
L++G
Sbjct: 119 TTLIHG 124
Score = 32.7 bits (73), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536
M K DL SL ++M+ +Y N I FC+ I AL + +M ++ P++ T
Sbjct: 23 MKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVT 82
Query: 537 FYYLVYGH 544
L+ G+
Sbjct: 83 LSSLLNGY 90
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 326 MEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD 385
ME K+ LV + L L++GY GK ++ L+ ++K F + C
Sbjct: 253 MEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRK--RGFEPNVNCYT 310
Query: 386 V-IDALIQL-GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
V I AL + ++ A + +ME G D TY +L++ + K M + ++L MRK
Sbjct: 311 VLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRK 370
Query: 444 SCLVQNLSCEMVV------SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497
++ + M + E+F E + LI++M+
Sbjct: 371 KGVMPSQVTYMQIMVAHEKKEQFEECLE--------------------LIEKMKRRGCHP 410
Query: 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546
+ N I CK + +A++++ M+ + P V+TF ++ G +S
Sbjct: 411 DLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTS 459
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 13/169 (7%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453
G L A ++L M+ AG D + +LL+ Y +A L+ MRK N++C
Sbjct: 250 GKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCY 309
Query: 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK 513
V+ + + T MD+ A + EM + I + I FCK
Sbjct: 310 TVLIQ----------ALCRTEKRMDE---AMRVFVEMERYGCEADIVTYTALISGFCKWG 356
Query: 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562
MI + M++ + P+ T+ ++ H E + + L +KR
Sbjct: 357 MIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKR 405
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 102/227 (44%), Gaps = 20/227 (8%)
Query: 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445
++DAL + G ++ A + +DM P + + SLL + + EA+ +L QM+++
Sbjct: 208 LLDALCKNGSVKEASKVFEDMR-EKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEA- 265
Query: 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505
L ++VV F+ + + + + D DL + +MR+ +
Sbjct: 266 ---GLEPDIVV---FTNLL---SGYAHAGKMADAYDL----MNDMRKRGFEPNVNCYTVL 312
Query: 506 IYFFCKG-KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI 564
I C+ K + +A++++ M+ + T+ L+ G M + D+++
Sbjct: 313 IQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRK-- 370
Query: 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
GV+ S+ Y +++ + FE +E+I MK++ + D L+Y
Sbjct: 371 -KGVMP-SQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIY 415
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 102/248 (41%), Gaps = 19/248 (7%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
++N K G NS L+ L +E + S VID+L + G + A + ++ME
Sbjct: 214 GPVLNRLCKSG-NSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME 272
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467
+ G D TY SL+ + + +L++M + +N+ ++V FS + D
Sbjct: 273 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM----IGRNIIPDVVT---FSALID-- 323
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
F L++ A+ L EM NS I FCK + +A +++ M
Sbjct: 324 -VFVKEGKLLE----AKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVS 378
Query: 528 MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587
P + T+ L+ + + D L+ R I S L + Y TL+L F Q G
Sbjct: 379 KGCEPDIVTYSILINSYCKAKRVDDGMRLF----REISSKGLIPNTITYNTLVLGFCQSG 434
Query: 588 YFERVMEV 595
E+
Sbjct: 435 KLNAAKEL 442
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 68/161 (42%), Gaps = 16/161 (9%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-R 442
S +ID ++ G L A ++ ++M G D+ TY SL+ + K EA + M
Sbjct: 319 SALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVS 378
Query: 443 KSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502
K C ++ ++++ S+ + D L +E+ + +
Sbjct: 379 KGCEPDIVTYSILIN-----------SYCKAK----RVDDGMRLFREISSKGLIPNTITY 423
Query: 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
N+ + FC+ + A ++++ M + P+V T+ L+ G
Sbjct: 424 NTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDG 464
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 14/156 (8%)
Query: 389 ALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQ 448
Q G L AA ++ +M G P TY LL +A + ++M+KS +
Sbjct: 429 GFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTL 488
Query: 449 NLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508
+ ++ + K D A SL + ++ + N I
Sbjct: 489 GIGIYNIIIHGMCNAS--------------KVDDAWSLFCSLSDKGVKPDVVTYNVMIGG 534
Query: 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
CK + +A ++R+M+E P T+ L+ H
Sbjct: 535 LCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAH 570
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 102/257 (39%), Gaps = 41/257 (15%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
S +ID L + G L+ A ++ ++ME+ G D Y +L+ + + + LL+ M K
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310
Query: 444 --------------SCLV--------QNLSCEMVVSERFSEVADKSASFTDTSSLMDKSD 481
C V + L EM + S S D ++ D
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEM-IQRGISPDTVTYTSLIDGFCKENQLD 369
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
A ++ M + I N I +CK +I D L+++R+M + T+ L+
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLI 429
Query: 542 YGHSSL-------EMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVME 594
G L E+++++ + R + +++ Y+ LL G E+ +E
Sbjct: 430 QGFCELGKLEVAKELFQEM------VSRRVRPDIVS-----YKILLDGLCDNGEPEKALE 478
Query: 595 VIGYMKKQNMYVDKLMY 611
+ ++K M +D +Y
Sbjct: 479 IFEKIEKSKMELDIGIY 495
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 112/274 (40%), Gaps = 27/274 (9%)
Query: 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGEST---LCSDVIDALIQLGFLEAA 399
S A++ L+ G +K GK E L++ K FG S + + +ID+L + A
Sbjct: 331 SEAAVSSLVEGLRKRGKIEEA----LNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEA 386
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
+ D M G + TY L+ + + A + L +M + L ++
Sbjct: 387 ELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVY-------P 439
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
++ + + F D S+ AE + EM + T+ S + +C I AL
Sbjct: 440 YNSLINGHCKFGDISA-------AEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKAL 492
Query: 520 KIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYET 578
++Y M I P++ TF L+ G + RD L+ ++ N++ +R Y
Sbjct: 493 RLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKP-----NRVTYNV 547
Query: 579 LLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
++ + + G + E + M ++ + D Y+
Sbjct: 548 MIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYR 581
Score = 37.4 bits (85), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 28/218 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDM 406
LI+G KH K+ +L + LL KE H G + + + +IDA + G + A I D M
Sbjct: 653 LIDGSLKH-KDRKLFFGLL---KEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLM 708
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN---LSCEMVVSERFSEV 463
G + TY +++ K EAE L +M+ V N C + + +
Sbjct: 709 INEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVD 768
Query: 464 ADKSASF-----------TDTSSLMDKS-------DLAESLIQEMREEAALSTIYKLNSS 505
K+ T T +++ + + A LI M + +
Sbjct: 769 MQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTM 828
Query: 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
I C+ + A++++ M E IRP + L++G
Sbjct: 829 INELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHG 866
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 21/179 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ VI +L +L L A +++ ME G ++ Y L+ K + EA + K +
Sbjct: 231 TGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAG 290
Query: 444 S----------------CLVQN--LSCEMV---VSERFSEVADKSASFTDTSSLMDKSDL 482
C VQ + EM+ + RFS +S + K +
Sbjct: 291 KDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEE 350
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
A +L++ + + ++ N+ I CKG+ +A ++ RM ++ +RP T+ L+
Sbjct: 351 ALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILI 409
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 109/273 (39%), Gaps = 37/273 (13%)
Query: 350 LINGYKKHGKNSELS--WLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
LI G ++GK E + W L+ K + T I L G++ A ++ ++E
Sbjct: 365 LIKGLLENGKIDEATMIWRLMPAKGYA---ADKTTYGIFIHGLCVNGYVNKALGVMQEVE 421
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS-CEMVVSERFSEVADK 466
+G +D Y S++ K K EA L+K+M K + N C ++ +
Sbjct: 422 SSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLG 481
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
ASF ++EM + T+ N I CK G+A + M
Sbjct: 482 EASF---------------FLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEML 526
Query: 527 EMKIRPTVETFYYLVYGHSSLEMYRDITI-----LWGD-IKRNIESGVLAVSRDLYETLL 580
E +P ++T+ L+ G + RD I LW ++ +E+ V+ ++ L+
Sbjct: 527 ENGWKPDLKTYSILLCG-----LCRDRKIDLALELWHQFLQSGLETDVM-----MHNILI 576
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G + M V+ M+ +N + + Y +
Sbjct: 577 HGLCSVGKLDDAMTVMANMEHRNCTANLVTYNT 609
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 105/252 (41%), Gaps = 27/252 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM-- 441
S VI+ L + G L+ A ++ D+M G D T Y L+ + K K + A L ++
Sbjct: 188 STVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLE 247
Query: 442 ---------RKSCLVQNLS-CEMV-----VSERFSEVADKSASFTDTS---SLMDKS--D 481
+ ++ LS C V + ER + + +T +S L D D
Sbjct: 248 DSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVD 307
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
AES+ E+ E A + N+ + FC+ I ++L+++R M E K + ++ L+
Sbjct: 308 KAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIM-EHKNSVNIVSYNILI 366
Query: 542 YGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
G + T++W R + + A + Y + GY + + V+ ++
Sbjct: 367 KGLLENGKIDEATMIW----RLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVES 422
Query: 602 QNMYVDKLMYKS 613
++D Y S
Sbjct: 423 SGGHLDVYAYAS 434
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 82/214 (38%), Gaps = 17/214 (7%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405
A A +I+ K + E S L+ + K H S +C+ +I LI+ L A L +
Sbjct: 431 AYASIIDCLCKKKRLEEASNLVKEMSK-HGVELNSHVCNALIGGLIRDSRLGEASFFLRE 489
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD 465
M G +Y L+ K F EA A +K+M ++ +L
Sbjct: 490 MGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDL--------------- 534
Query: 466 KSASFTDTSSLMD-KSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRR 524
K+ S D K DLA L + + + + N I+ C + DA+ +
Sbjct: 535 KTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMAN 594
Query: 525 MQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG 558
M+ + T+ L+ G + T++WG
Sbjct: 595 MEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWG 628
Score = 32.7 bits (73), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 15/162 (9%)
Query: 397 EAAHDILDDM-ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
+ A D+ M E+ G +Y +LL A+ + K + + E+L + + NL V
Sbjct: 95 DQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNV 154
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
+ + ++ K F +D M +E ++ ++ I K +
Sbjct: 155 LIK----MSCKKKEFEKARGFLD----------WMWKEGFKPDVFSYSTVINDLAKAGKL 200
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557
DAL+++ M E + P V + L+ G + ++ LW
Sbjct: 201 DDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELW 242
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/265 (19%), Positives = 113/265 (42%), Gaps = 25/265 (9%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-SDVIDALIQLGFLEAAHDILDDMEL 408
LI GY K G + L++ + H S + + +I ++ + G + A + LD M +
Sbjct: 316 LIKGYCKEGNFHQ--ALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
G + TY +L+ + + EA +L++M + FS
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDN--------------GFSPSVVTYN 419
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
+ + + K + A +++++M+E+ + ++ + FC+ + +AL++ R M E
Sbjct: 420 ALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEK 479
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD--LYETLLLNFLQG 586
I+P T+ L+ G ++ L+ ++ R + + D Y L+ +
Sbjct: 480 GIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLR------VGLPPDEFTYTALINAYCME 533
Query: 587 GYFERVMEVIGYMKKQNMYVDKLMY 611
G E+ +++ M ++ + D + Y
Sbjct: 534 GDLEKALQLHNEMVEKGVLPDVVTY 558
Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 85/228 (37%), Gaps = 34/228 (14%)
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-SC 452
G ++ A + D ME G + TY +L+ Y K++ + LL+ M L NL S
Sbjct: 219 GNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISY 278
Query: 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKG 512
+V++ E K SF ++ EM N+ I +CK
Sbjct: 279 NVVINGLCREGRMKEVSF---------------VLTEMNRRGYSLDEVTYNTLIKGYCKE 323
Query: 513 KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE------- 565
AL ++ M + P+V T+ L+ HS + G++ R +E
Sbjct: 324 GNFHQALVMHAEMLRHGLTPSVITYTSLI--HSMCK--------AGNMNRAMEFLDQMRV 373
Query: 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
G+ R Y TL+ F Q GY V+ M + Y +
Sbjct: 374 RGLCPNERT-YTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNA 420
Score = 37.4 bits (85), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
AE++ +EM E ++ N I FC I AL ++ +M+ P V T+ L+
Sbjct: 188 FAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLI 247
Query: 542 YGHSSLEMYRD-ITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600
G+ L D +L + +E +++ Y ++ + G + V V+ M
Sbjct: 248 DGYCKLRKIDDGFKLLRSMALKGLEPNLIS-----YNVVINGLCREGRMKEVSFVLTEMN 302
Query: 601 KQNMYVDKLMYKS 613
++ +D++ Y +
Sbjct: 303 RRGYSLDEVTYNT 315
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 70/181 (38%), Gaps = 21/181 (11%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ ++D Q G++ A+ +L +M G TY +L+ + +A A+L+ M++
Sbjct: 384 TTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE 443
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDK---------SDLAESLIQEMREEA 494
L ++ V F D + +++K S L + ++ R +
Sbjct: 444 KGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKE 503
Query: 495 ALSTI------------YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A + + I +C + AL+++ M E + P V T+ L+
Sbjct: 504 ACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLIN 563
Query: 543 G 543
G
Sbjct: 564 G 564
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 18/111 (16%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKE--------HHSFGESTLCSDV--------IDALIQL 393
LING K + E LLL + E +H+ E+ CS++ I
Sbjct: 561 LINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIEN--CSNIEFKSVVSLIKGFCMK 618
Query: 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
G + A + + M H D T Y ++ + + R+A L K+M KS
Sbjct: 619 GMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKS 669
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 87/216 (40%), Gaps = 18/216 (8%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +ID+L + G + A + D ME G D Y SL+ +R+A++LL+ M K
Sbjct: 181 TTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTK 240
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+ + +++ + K F D AE L EM + I+
Sbjct: 241 ----RKIKPDVITFNALIDAFVKEGKFLD----------AEELYNEMIRMSIAPNIFTYT 286
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
S I FC + +A +++ M+ P V + L+ G + D ++ ++ +
Sbjct: 287 SLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQK 346
Query: 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599
+G + Y TL+ F Q G EV +M
Sbjct: 347 GLTG----NTITYTTLIQGFGQVGKPNVAQEVFSHM 378
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 24/221 (10%)
Query: 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSF-GESTLCSDVIDALIQLGFLEAAHDILD 404
++ LING+ + N + L K E F + + + +ID ++G + A ++ D
Sbjct: 141 TVSSLINGFCQG--NRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFD 198
Query: 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-----SCEMVVSE- 458
ME G D+ TY SL+ + +A L++ M +V N+ ++ V E
Sbjct: 199 RMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEG 258
Query: 459 RFSEV-----------ADKSA----SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
+FSE D S + + + D A+ ++ M + L + N
Sbjct: 259 KFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYN 318
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGH 544
+ I FCK K + + K++R M + + T+ ++ G+
Sbjct: 319 TLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGY 359
Score = 40.0 bits (92), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 80/202 (39%), Gaps = 21/202 (10%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I+ L G ++ A +LD M G D TY +L+ + K K E L ++M +
Sbjct: 283 NSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQ 342
Query: 444 SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503
LV + + + + + + D A+ + M + T L
Sbjct: 343 RGLVGDTITYNTIIQGYFQAG--------------RPDAAQEIFSRMDSRPNIRTYSIL- 387
Query: 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563
+Y C + AL ++ MQ+ +I + T+ +++G + D W D+ R+
Sbjct: 388 --LYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVED---AW-DLFRS 441
Query: 564 IESGVLAVSRDLYETLLLNFLQ 585
+ L Y T++ F +
Sbjct: 442 LSCKGLKPDVVSYTTMISGFCR 463
Score = 39.7 bits (91), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%)
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
+A S++ +M + + ++S I FC+G + DA+ + +M+EM RP V + ++
Sbjct: 122 IALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTII 181
Query: 542 YGHSSLEMYRDITILWGDIKRN 563
G + + D L+ ++R+
Sbjct: 182 DGSCKIGLVNDAVELFDRMERD 203
Score = 37.4 bits (85), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
A L+ +M E + N+ I CK ++ DA++++ RM+ +R T+ LV
Sbjct: 158 AIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVA 217
Query: 543 GHSSLEMYRDITILWGD-IKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601
G + D L D + R+I V+ + ++ F++ G F M++ M +
Sbjct: 218 GLCCSGRWSDAARLMRDMVMRDIVPNVIT-----FTAVIDVFVKEGKFSEAMKLYEEMTR 272
Query: 602 QNMYVDKLMYKS 613
+ + D Y S
Sbjct: 273 RCVDPDVFTYNS 284
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 69/385 (17%), Positives = 153/385 (39%), Gaps = 48/385 (12%)
Query: 162 LSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQI 221
+S + NG +KPDT++FN +++A G+ + I E M ++G A + L +
Sbjct: 377 ISKVEKNG---LKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKG 433
Query: 222 HEMNCQRDELKKFKCYI--DQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRY 279
+ + +E + + D++ P ++ + I+ A ++ M Y
Sbjct: 434 YGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQR----KIEEAWNIVYKMQSY 489
Query: 280 REPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGK 339
P+ K Y IGS C + I+P +L + K
Sbjct: 490 GVK-PDVVTFNTLAKAY-ARIGS---TCTAEDMIIPRML------------------HNK 526
Query: 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399
+ + R ++NGY + GK E +K E + + +I + + ++
Sbjct: 527 VKPNVRTCGTIVNGYCEEGKMEEALRFFYRMK-ELGVHPNLFVFNSLIKGFLNINDMDGV 585
Query: 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSER 459
+++D ME G D T+ +L+ A+ V + E + M + + ++ ++++
Sbjct: 586 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 645
Query: 460 FSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519
++ + + AE ++ +MR+ + I +C + A+
Sbjct: 646 YARAGE--------------PEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAM 691
Query: 520 KIYRRMQEM-KIRPTVETFYYLVYG 543
++Y++M + + P + T+ L++G
Sbjct: 692 QVYKKMCGIVGLSPNLTTYETLIWG 716
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 28/196 (14%)
Query: 380 STLCSDV------IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE 433
T C DV ++ LI+ G + AH I + + GH TY +L+TA + K F
Sbjct: 313 GTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHS 372
Query: 434 AEALLKQMRKSCL----------------VQNLSCEMVVSERFSEVADKSASFTDTSSL- 476
+L+ ++ K+ L NL M + E+ E K + T + +
Sbjct: 373 LLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIK 432
Query: 477 ----MDKSDLAESLIQEM-REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR 531
+ K + + L+ M R+E N + +C + I +A I +MQ ++
Sbjct: 433 GYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVK 492
Query: 532 PTVETFYYLVYGHSSL 547
P V TF L ++ +
Sbjct: 493 PDVVTFNTLAKAYARI 508
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 111/271 (40%), Gaps = 35/271 (12%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
LI GY K GK E S LL + ++ C+ ++ A +E A +I+ M+
Sbjct: 430 LIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSY 489
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAE-ALLKQMRKSCLVQNL-SCEMVVSERFSEVADKS 467
G D T+ +L AY ++ AE ++ +M + + N+ +C +V+ E
Sbjct: 490 GVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEE----- 544
Query: 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527
K + A M+E ++ NS I F + ++ M+E
Sbjct: 545 ----------GKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEE 594
Query: 528 MKIRPTVETFYYLVYGHSSL-------EMYRDITILWGDIKRNIESGVLAVSRDLYETLL 580
++P V TF L+ SS+ E+Y D +L G I +I + + L
Sbjct: 595 FGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTD--MLEGGIDPDIHA---------FSILA 643
Query: 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611
+ + G E+ +++ M+K + + ++Y
Sbjct: 644 KGYARAGEPEKAEQILNQMRKFGVRPNVVIY 674
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 99/484 (20%), Positives = 186/484 (38%), Gaps = 62/484 (12%)
Query: 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232
I PD FN++++ GS K ++M+ M ++G A +I+ + C++ K
Sbjct: 189 ICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGY---APTIVTYNTVLHWYCKKGRFK 245
Query: 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNP----KL 288
+D + + Y L+ + + I A G L+L R R PN L
Sbjct: 246 AAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRI-AKGYLLLRDMRKRMIHPNEVTYNTL 304
Query: 289 RQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILK---MEG--KQELVLF---RNGKL 340
+ I S L L + P + ++++ EG K+ L +F L
Sbjct: 305 INGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGL 364
Query: 341 LHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAH 400
S + L++G K+ + + +K+ G T + +ID L + GFL+ A
Sbjct: 365 TPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITY-TGMIDGLCKNGFLDEAV 423
Query: 401 DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERF 460
+L++M G D TY +L+ + KV F+ A+ ++ ++ + L N ++ S
Sbjct: 424 VLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPN---GIIYSTLI 480
Query: 461 SEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALK 520
L + + E++I E + N + CK + +A +
Sbjct: 481 YNCC-------RMGCLKEAIRIYEAMILEGHTRDH----FTFNVLVTSLCKAGKVAEAEE 529
Query: 521 IYRRMQEMKIRPTVETFYYLV--YGHS-----SLEMYRDIT--------ILWGDIKRNIE 565
R M I P +F L+ YG+S + ++ ++T +G + + +
Sbjct: 530 FMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLC 589
Query: 566 SG----------------VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKL 609
G AV +Y TLL + G + + + G M ++++ D
Sbjct: 590 KGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSY 649
Query: 610 MYKS 613
Y S
Sbjct: 650 TYTS 653
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 22/217 (10%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
+ LING+ K G+ ++ I + S + S +I ++G L+ A I + M
Sbjct: 442 SALINGFCKVGRFKTAKEIVCRIYRVGLS-PNGIIYSTLIYNCCRMGCLKEAIRIYEAMI 500
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN---LSC------------ 452
L GH D T+ L+T+ K EAE ++ M ++ N C
Sbjct: 501 LEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGL 560
Query: 453 -EMVVSERFSEVADKSASFTDTS---SLMDKSDL--AESLIQEMREEAALSTIYKLNSSI 506
V + ++V FT S L L AE ++ + A N+ +
Sbjct: 561 KAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLL 620
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
CK + A+ ++ M + I P T+ L+ G
Sbjct: 621 TAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISG 657
Score = 33.5 bits (75), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 482 LAESLIQEMREEAALSTIYKLNSSIYFFCK---GKMI--GDALKIYRRMQEM---KIRPT 533
L E +IQ+ E L +Y N S+Y C G ++ G+ + ++ ++EM KI P
Sbjct: 134 LREGMIQDSLEIFRLMGLYGFNPSVYT-CNAILGSVVKSGEDVSVWSFLKEMLKRKICPD 192
Query: 534 VETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVM 593
V TF L+ + + + L + +E A + Y T+L + + G F+ +
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLM----QKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAI 248
Query: 594 EVIGYMKKQNMYVDKLMY 611
E++ +MK + + D Y
Sbjct: 249 ELLDHMKSKGVDADVCTY 266
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 14/146 (9%)
Query: 421 LLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS 480
LL + K ++ + K+M K +V N+ V+ S+ D
Sbjct: 174 LLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGD--------------P 219
Query: 481 DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYL 540
+ AE L+ EM E+ I+ N+ I +CK M +AL + RM+ + P + T+
Sbjct: 220 EKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSF 279
Query: 541 VYGHSSLEMYRDITILWGDIKRNIES 566
++G S R+ T L+ +IK ++ +
Sbjct: 280 IHGFSREGRMREATRLFREIKDDVTA 305
Score = 36.2 bits (82), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 86/208 (41%), Gaps = 18/208 (8%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
I+G+ + G+ E + L IK + + + +ID ++ ++ A + + ME
Sbjct: 279 FIHGFSREGRMREATRLFREIKDDVTA--NHVTYTTLIDGYCRMNDIDEALRLREVMESR 336
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR-KSCLVQNLSCEMVVSERFSEVADKSA 468
G TY S+L + REA LL +M K N++C +++ + ++ D +
Sbjct: 337 GFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINA-YCKIEDMVS 395
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
A + ++M E +Y + I+ FCK + +A + M E
Sbjct: 396 --------------AVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEK 441
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITIL 556
P T+ +LV G + +IT L
Sbjct: 442 GFSPGYATYSWLVDGFYNQNKQDEITKL 469
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
L++ Y + G+ LL +K H+ + S +I + +Q+ + D+L DM
Sbjct: 191 LVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQ 250
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM 441
G ++ TY +L+ AY K KMF E E+ L QM
Sbjct: 251 GIRPNTITYNTLIDAYGKAKMFVEMESTLIQM 282
Score = 33.5 bits (75), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 33/178 (18%)
Query: 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS--CL-------- 446
E AH++ +M G ++ Y +L++AY + F A LL++M+ S C
Sbjct: 167 EKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSI 226
Query: 447 -------------VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS----DLAESLIQE 489
VQ+L +M R + + ++ K+ ++ +LIQ
Sbjct: 227 LIKSFLQVFAFDKVQDLLSDM----RRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQM 282
Query: 490 MREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV--YGHS 545
+ E+ + +NS++ F I Y + Q I P + TF L+ YG S
Sbjct: 283 LGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKS 340
>sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290
OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
Length = 904
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 104/235 (44%), Gaps = 29/235 (12%)
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAE---ALLKQ 440
+ +I+ +G +E +L M G + TY SL+ Y K + EAE LLK+
Sbjct: 265 NSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKE 324
Query: 441 -------------MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD---KSDL-- 482
M C + + V + E+ ++ + T +SL++ KS
Sbjct: 325 KKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNT-TICNSLINGYCKSGQLV 383
Query: 483 -AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541
AE + M + + + N+ + +C+ + +ALK+ +M + ++ PTV T+ L+
Sbjct: 384 EAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILL 443
Query: 542 YGHSSLEMYRDITILWG-DIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEV 595
G+S + + D+ LW +KR + + ++ S TLL + G F M++
Sbjct: 444 KGYSRIGAFHDVLSLWKMMLKRGVNADEISCS-----TLLEALFKLGDFNEAMKL 493
Score = 40.4 bits (93), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 94/242 (38%), Gaps = 28/242 (11%)
Query: 327 EGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLC 383
E + L + KL+ L++GY + G+ + + + G +T+C
Sbjct: 314 EAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDA----VRVHDNMIEIGVRTNTTIC 369
Query: 384 SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443
+ +I+ + G L A I M D TY +L+ Y + EA L QM +
Sbjct: 370 NSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQ 429
Query: 444 SCLVQNLSCEMVVSERFSEV-------------------ADKSASFTDTSSLMDKSDLAE 484
+V + ++ + +S + AD+ + T +L D E
Sbjct: 430 KEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNE 489
Query: 485 S--LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542
+ L + + L+ LN I CK + + +A +I + + +P V+T+ L +
Sbjct: 490 AMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSH 549
Query: 543 GH 544
G+
Sbjct: 550 GY 551
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 101/245 (41%), Gaps = 29/245 (11%)
Query: 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMV 455
LE A ++ ++M+ +G T+ L+ A+ K EA LK+M+ L ++V
Sbjct: 193 LEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMK----FMGLEADLV 248
Query: 456 VSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515
V F D L D ++L E+ E N+ I FCK +
Sbjct: 249 VYTSLIR------GFCDCGEL----DRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQL 298
Query: 516 GDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD-ITILWGDIKRNIESGVLAVSRD 574
+A +I+ M E +RP V T+ L+ G + ++ + +L I+++ E +
Sbjct: 299 KEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVT---- 354
Query: 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY---------KSEFLKHHKHLYRR 625
Y ++ + G +E++ MKK+ D + Y K + + K LY
Sbjct: 355 -YNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLM 413
Query: 626 LKVSN 630
LK S+
Sbjct: 414 LKDSS 418
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 110/260 (42%), Gaps = 36/260 (13%)
Query: 350 LINGYKKHGKNSELSWLL-LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408
L+ G G E S LL L +K ++ + + +I L + L A DI D +
Sbjct: 393 LLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVE 452
Query: 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468
D T LL + K +A L KQ+ S +V+N S+ ++ + D
Sbjct: 453 KLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRN-------SDTYTAMID--- 502
Query: 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528
F T L ++A+ L+ +MR +++ N + CK + A +++ MQ
Sbjct: 503 GFCKTGML----NVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRD 558
Query: 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR-----DL--YETLLL 581
P V +F ++ G ++ GDIK + ES ++ +SR DL Y L+
Sbjct: 559 NNFPDVVSFNIMIDG----------SLKAGDIK-SAESLLVGMSRAGLSPDLFTYSKLIN 607
Query: 582 NFLQGGYFERVMEVIGYMKK 601
FL+ GY + E I + K
Sbjct: 608 RFLKLGYLD---EAISFFDK 624
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 21/197 (10%)
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG-ESTLC--SDVIDALIQLGFLEAAHDILDDM 406
LI+ + K GK E L KE G E+ L + +I G L+ + D++
Sbjct: 218 LIDAFCKAGKMDEAMGFL----KEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEV 273
Query: 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466
G + TY +L+ + K+ +EA + + M + + N+
Sbjct: 274 LERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVY--------------T 319
Query: 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
D + K+ A L+ M E+ N I CK ++ DA++I M+
Sbjct: 320 YTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMK 379
Query: 527 EMKIRPTVETFYYLVYG 543
+ + RP T+ L+ G
Sbjct: 380 KRRTRPDNITYNILLGG 396
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 54/275 (19%), Positives = 106/275 (38%), Gaps = 34/275 (12%)
Query: 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKK 233
+PD + +N++L G + ++ LM + D I A IH + C+ + L +
Sbjct: 384 RPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGL-CKENRLHQ 442
Query: 234 FKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGEL---ILDMNRYREPLPNPKLRQ 290
D L + LL+ K D++ A EL I D R +
Sbjct: 443 ALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMID 502
Query: 291 DAQKPYLISIGSPNLRCGLKL-QIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAK 349
K ++++ + L C +++ ++ P + + + +L L + G L
Sbjct: 503 GFCKTGMLNV-AKGLLCKMRVSELQPSVFDYNCLLS-------SLCKEGSL--------- 545
Query: 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409
+ +W L + ++F + + +ID ++ G +++A +L M A
Sbjct: 546 ------------DQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRA 593
Query: 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444
G D TY L+ + K+ EA + +M S
Sbjct: 594 GLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDS 628
Score = 33.5 bits (75), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526
A SL++EMR + + ++ N+ I FC+GK + AL++ M+
Sbjct: 161 AVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMK 204
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 120/286 (41%), Gaps = 26/286 (9%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407
++NG K G +++L+ LL+ + + S VID+L + + A ++ +ME
Sbjct: 222 GAVVNGLCKRG-DTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME 280
Query: 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSC------------EMV 455
G + TY SL++ + +A LL M + + NL ++V
Sbjct: 281 NKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLV 340
Query: 456 VSER-FSEVADKS--------ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506
+E+ + E+ +S +S + ++D+ A+ +++ M + L + N+ I
Sbjct: 341 KAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLI 400
Query: 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566
FCK K + ++++R M + + T+ L++G RD K+ +
Sbjct: 401 NGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQA---RDCDNAQMVFKQMVSV 457
Query: 567 GVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612
GV + Y LL + G + M V Y+++ M D Y
Sbjct: 458 GVHP-NILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYN 502
Score = 37.0 bits (84), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543
I LNS + FC G I DA+ + +M EM +P TF L++G
Sbjct: 148 IVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHG 192
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/272 (18%), Positives = 114/272 (41%), Gaps = 21/272 (7%)
Query: 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDIL 403
N A LI +K G++++ W + E + ++ + G E A I
Sbjct: 308 NVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQ 367
Query: 404 DDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEV 463
+ME G ++ Y +L+ AY K E E L +MR L + + ++ + ++
Sbjct: 368 TEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARR 427
Query: 464 ADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGD-ALKIY 522
+ D+ E+L++EM + + I + + K + D A +
Sbjct: 428 M--------------QPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAF 473
Query: 523 RRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI-KRNIESGVLAVSRDLYETLLL 581
RM+++ ++P+ ++ L++ +S + + ++ K I+ V + Y ++L
Sbjct: 474 LRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSV-----ETYTSVLD 528
Query: 582 NFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613
F + G ++ME+ M ++ + ++ Y +
Sbjct: 529 AFRRSGDTGKLMEIWKLMLREKIKGTRITYNT 560
>sp|Q6NKW7|PP164_ARATH Pentatricopeptide repeat-containing protein At2g19280
OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2
Length = 693
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/259 (19%), Positives = 108/259 (41%), Gaps = 23/259 (8%)
Query: 348 AKLINGYKKHGKNSELSWLLLSIKKEHH--SFGESTLCSDVIDALIQLGFLEAAHDILDD 405
+I+GY G+ + ++ K + S ST+ +I A + G + A + +
Sbjct: 412 TTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTI---LIGACSRFGSISDAESVFRN 468
Query: 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD 465
M+ G +D TY +L+ Y K + L+ +MR + + +++ ++
Sbjct: 469 MKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNIL--------- 519
Query: 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525
+ + D A +I E+ + + I F K +A ++ M
Sbjct: 520 -----IHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYM 574
Query: 526 QEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ 585
+++++P V T L++G+ + +L+ + +++G L LY TL+ +
Sbjct: 575 ADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKL---LDAG-LKPDVVLYNTLIHGYCS 630
Query: 586 GGYFERVMEVIGYMKKQNM 604
G E+ E+IG M ++ M
Sbjct: 631 VGDIEKACELIGLMVQRGM 649
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 220,975,371
Number of Sequences: 539616
Number of extensions: 8763599
Number of successful extensions: 25003
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 23333
Number of HSP's gapped (non-prelim): 1214
length of query: 653
length of database: 191,569,459
effective HSP length: 124
effective length of query: 529
effective length of database: 124,657,075
effective search space: 65943592675
effective search space used: 65943592675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)