Query 048743
Match_columns 653
No_of_seqs 378 out of 2874
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 12:38:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.8E-72 8.2E-77 626.4 52.8 593 15-650 47-717 (857)
2 PLN03218 maturation of RBCL 1; 100.0 2.2E-66 4.7E-71 567.6 59.2 513 17-634 368-908 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 8.5E-65 1.8E-69 555.1 56.3 484 16-609 403-916 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 1.3E-63 2.8E-68 557.7 49.4 526 15-610 148-728 (857)
5 PLN03081 pentatricopeptide (PP 100.0 7.8E-63 1.7E-67 538.4 45.4 468 52-635 85-557 (697)
6 PLN03081 pentatricopeptide (PP 100.0 3.2E-60 6.9E-65 517.9 46.9 464 21-605 89-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-24 6.6E-29 246.1 57.7 551 17-633 327-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-23 2.5E-28 241.4 61.2 545 20-634 296-865 (899)
9 PRK11447 cellulose synthase su 99.9 1.7E-16 3.7E-21 182.9 56.6 565 21-633 114-738 (1157)
10 PRK11788 tetratricopeptide rep 99.9 2.1E-18 4.6E-23 177.0 34.7 305 185-609 43-354 (389)
11 PRK11788 tetratricopeptide rep 99.8 8.5E-18 1.8E-22 172.5 31.0 316 100-550 42-363 (389)
12 PRK11447 cellulose synthase su 99.8 5.1E-15 1.1E-19 170.7 56.0 519 14-634 57-699 (1157)
13 KOG4626 O-linked N-acetylgluco 99.8 9.8E-16 2.1E-20 149.8 37.4 451 10-617 39-500 (966)
14 KOG4422 Uncharacterized conser 99.8 3.5E-14 7.7E-19 133.2 40.5 439 24-604 120-592 (625)
15 PRK09782 bacteriophage N4 rece 99.8 3.9E-12 8.5E-17 140.5 59.4 543 13-608 72-710 (987)
16 PRK09782 bacteriophage N4 rece 99.8 2.8E-12 6.2E-17 141.6 58.3 560 21-634 44-705 (987)
17 PRK15174 Vi polysaccharide exp 99.8 5.7E-14 1.2E-18 151.4 43.9 358 29-527 15-380 (656)
18 TIGR00990 3a0801s09 mitochondr 99.7 1.7E-13 3.7E-18 148.3 47.1 417 22-561 130-569 (615)
19 PRK10049 pgaA outer membrane p 99.7 7.2E-13 1.6E-17 146.1 46.8 423 18-601 14-455 (765)
20 PRK14574 hmsH outer membrane p 99.7 3.1E-12 6.8E-17 138.4 50.4 457 11-561 28-511 (822)
21 KOG4626 O-linked N-acetylgluco 99.7 2.9E-14 6.3E-19 139.7 29.1 362 53-561 115-483 (966)
22 PRK15174 Vi polysaccharide exp 99.7 4.1E-13 8.8E-18 144.9 41.3 327 182-602 47-381 (656)
23 PRK10049 pgaA outer membrane p 99.7 1.7E-12 3.7E-17 143.2 46.9 419 53-634 14-455 (765)
24 KOG4422 Uncharacterized conser 99.7 5E-13 1.1E-17 125.6 35.7 394 15-548 203-610 (625)
25 TIGR00990 3a0801s09 mitochondr 99.7 1.4E-12 3.1E-17 141.2 45.1 234 344-603 331-572 (615)
26 PRK14574 hmsH outer membrane p 99.6 1E-10 2.2E-15 126.8 45.9 422 100-634 41-512 (822)
27 KOG2002 TPR-containing nuclear 99.6 2.3E-10 5E-15 118.9 44.8 252 352-615 504-758 (1018)
28 KOG4318 Bicoid mRNA stability 99.5 6.6E-10 1.4E-14 114.2 35.4 232 13-276 19-262 (1088)
29 KOG2002 TPR-containing nuclear 99.4 2.1E-08 4.6E-13 104.6 44.5 528 12-605 226-801 (1018)
30 PF13041 PPR_2: PPR repeat fam 99.4 4.4E-13 9.5E-18 91.0 6.7 50 497-546 1-50 (50)
31 PF13041 PPR_2: PPR repeat fam 99.4 3.7E-13 8.1E-18 91.3 6.0 50 175-224 1-50 (50)
32 KOG2003 TPR repeat-containing 99.4 4E-09 8.6E-14 100.4 33.5 494 18-623 200-708 (840)
33 PRK10747 putative protoheme IX 99.3 2.3E-09 4.9E-14 109.2 31.1 220 351-600 160-388 (398)
34 KOG1155 Anaphase-promoting com 99.3 1.6E-07 3.6E-12 90.2 40.0 299 183-600 233-534 (559)
35 PRK10747 putative protoheme IX 99.3 2E-09 4.3E-14 109.5 28.7 280 160-561 98-388 (398)
36 KOG4318 Bicoid mRNA stability 99.3 3.7E-09 8E-14 108.8 29.5 338 171-600 19-368 (1088)
37 PF13429 TPR_15: Tetratricopep 99.3 1.8E-11 3.9E-16 118.9 12.6 63 498-561 213-275 (280)
38 KOG2076 RNA polymerase III tra 99.3 1.3E-06 2.9E-11 91.0 47.5 506 22-635 142-695 (895)
39 TIGR00540 hemY_coli hemY prote 99.3 1.7E-08 3.8E-13 103.3 34.2 298 179-560 84-396 (409)
40 TIGR00540 hemY_coli hemY prote 99.3 6E-09 1.3E-13 106.7 30.8 205 176-443 186-398 (409)
41 KOG2076 RNA polymerase III tra 99.3 5.2E-08 1.1E-12 101.1 36.9 352 174-601 170-554 (895)
42 PF13429 TPR_15: Tetratricopep 99.3 2.1E-11 4.6E-16 118.4 11.9 260 98-443 13-276 (280)
43 KOG2003 TPR repeat-containing 99.2 2.7E-08 6E-13 94.8 29.6 256 353-634 428-688 (840)
44 COG2956 Predicted N-acetylgluc 99.2 4.8E-08 1E-12 89.5 28.8 298 189-604 47-349 (389)
45 KOG1915 Cell cycle control pro 99.2 1.3E-06 2.8E-11 84.3 38.7 439 73-615 89-547 (677)
46 COG3071 HemY Uncharacterized e 99.2 7E-08 1.5E-12 91.3 29.9 235 343-607 152-395 (400)
47 KOG1126 DNA-binding cell divis 99.2 9.2E-09 2E-13 103.3 25.1 279 192-561 334-618 (638)
48 COG2956 Predicted N-acetylgluc 99.2 2.4E-07 5.2E-12 85.0 31.0 293 73-528 51-347 (389)
49 KOG1126 DNA-binding cell divis 99.1 2.1E-08 4.5E-13 100.8 24.5 50 477-528 570-620 (638)
50 KOG2047 mRNA splicing factor [ 99.1 1.2E-05 2.7E-10 80.7 43.2 504 18-600 168-717 (835)
51 TIGR02521 type_IV_pilW type IV 99.1 5.7E-08 1.2E-12 91.7 24.5 202 175-443 29-231 (234)
52 TIGR02521 type_IV_pilW type IV 99.1 1.3E-07 2.8E-12 89.2 26.7 201 343-600 30-230 (234)
53 KOG0495 HAT repeat protein [RN 99.1 2.7E-05 5.9E-10 78.5 45.8 455 28-602 385-846 (913)
54 KOG1173 Anaphase-promoting com 99.0 2.8E-06 6.1E-11 84.0 34.0 490 17-615 14-529 (611)
55 COG3071 HemY Uncharacterized e 99.0 1.6E-06 3.4E-11 82.4 31.1 286 73-449 100-395 (400)
56 KOG0547 Translocase of outer m 99.0 6.3E-06 1.4E-10 80.1 35.6 219 224-526 338-564 (606)
57 KOG0495 HAT repeat protein [RN 99.0 5.1E-05 1.1E-09 76.6 46.9 327 176-600 549-878 (913)
58 PRK12370 invasion protein regu 99.0 2.9E-07 6.2E-12 98.2 27.6 263 343-635 255-535 (553)
59 KOG0547 Translocase of outer m 99.0 2.5E-05 5.4E-10 76.1 36.9 399 182-634 120-565 (606)
60 KOG2047 mRNA splicing factor [ 99.0 7.7E-05 1.7E-09 75.2 46.5 228 383-631 480-719 (835)
61 KOG1155 Anaphase-promoting com 98.9 1.9E-05 4.2E-10 76.4 33.0 268 338-634 256-535 (559)
62 PRK12370 invasion protein regu 98.9 1.5E-06 3.2E-11 92.8 28.6 218 357-603 317-536 (553)
63 KOG1915 Cell cycle control pro 98.9 0.00013 2.7E-09 71.0 45.8 466 31-569 85-591 (677)
64 KOG1840 Kinesin light chain [C 98.8 5.3E-06 1.2E-10 84.5 28.6 244 345-600 200-477 (508)
65 KOG1840 Kinesin light chain [C 98.8 1.4E-06 3.1E-11 88.6 24.0 250 178-526 200-477 (508)
66 PF12854 PPR_1: PPR repeat 98.8 5.5E-09 1.2E-13 63.4 3.8 33 494-526 2-34 (34)
67 KOG1129 TPR repeat-containing 98.8 6.5E-07 1.4E-11 82.2 18.2 229 348-602 227-458 (478)
68 PF12569 NARP1: NMDA receptor- 98.8 2E-05 4.3E-10 81.4 31.1 265 341-634 34-333 (517)
69 KOG1129 TPR repeat-containing 98.8 8E-07 1.7E-11 81.7 18.0 230 216-527 227-457 (478)
70 PF12854 PPR_1: PPR repeat 98.8 7.8E-09 1.7E-13 62.7 3.5 34 171-204 1-34 (34)
71 KOG3785 Uncharacterized conser 98.7 0.00019 4.1E-09 67.2 31.8 214 396-633 270-488 (557)
72 KOG1174 Anaphase-promoting com 98.7 0.00037 8E-09 66.8 38.6 288 187-561 206-498 (564)
73 KOG2376 Signal recognition par 98.7 0.00046 1E-08 69.2 34.7 372 92-558 109-515 (652)
74 KOG4162 Predicted calmodulin-b 98.6 0.00092 2E-08 69.3 37.5 241 18-276 322-573 (799)
75 PF12569 NARP1: NMDA receptor- 98.6 5.2E-05 1.1E-09 78.4 29.3 238 340-599 67-331 (517)
76 cd05804 StaR_like StaR_like; a 98.6 0.0002 4.3E-09 72.5 33.3 63 539-602 269-336 (355)
77 cd05804 StaR_like StaR_like; a 98.6 0.00044 9.5E-09 70.0 34.5 310 177-563 6-336 (355)
78 KOG3616 Selective LIM binding 98.6 0.00036 7.7E-09 71.5 32.2 212 387-648 713-932 (1636)
79 KOG1156 N-terminal acetyltrans 98.6 0.0012 2.6E-08 67.1 37.5 98 175-278 73-171 (700)
80 KOG1173 Anaphase-promoting com 98.6 0.00023 5E-09 71.0 30.0 250 174-543 275-531 (611)
81 KOG1156 N-terminal acetyltrans 98.5 0.0017 3.7E-08 66.1 44.5 440 19-604 7-470 (700)
82 PRK11189 lipoprotein NlpI; Pro 98.5 0.00015 3.2E-09 70.7 27.3 97 345-444 65-161 (296)
83 PRK11189 lipoprotein NlpI; Pro 98.5 7.9E-05 1.7E-09 72.6 25.3 171 344-538 98-274 (296)
84 COG3063 PilF Tfp pilus assembl 98.5 0.00011 2.4E-09 64.9 22.7 198 179-443 37-235 (250)
85 KOG2376 Signal recognition par 98.5 0.002 4.4E-08 64.9 40.3 474 58-633 13-518 (652)
86 KOG3785 Uncharacterized conser 98.5 0.00074 1.6E-08 63.4 28.4 393 184-629 29-451 (557)
87 COG3063 PilF Tfp pilus assembl 98.5 0.00014 3E-09 64.3 22.3 191 346-557 37-230 (250)
88 KOG3616 Selective LIM binding 98.4 0.0014 3.1E-08 67.3 31.8 198 21-275 734-933 (1636)
89 KOG3617 WD40 and TPR repeat-co 98.4 0.0031 6.8E-08 65.8 33.7 214 14-276 721-964 (1416)
90 TIGR00756 PPR pentatricopeptid 98.4 5.4E-07 1.2E-11 55.8 3.9 35 178-212 1-35 (35)
91 PRK04841 transcriptional regul 98.4 0.013 2.7E-07 67.7 47.3 427 109-603 291-761 (903)
92 KOG3617 WD40 and TPR repeat-co 98.3 0.006 1.3E-07 63.8 36.0 250 73-443 744-995 (1416)
93 PF04733 Coatomer_E: Coatomer 98.3 3.6E-05 7.9E-10 73.9 17.9 153 388-561 110-263 (290)
94 PF13812 PPR_3: Pentatricopept 98.3 7.4E-07 1.6E-11 54.6 4.1 34 177-210 1-34 (34)
95 KOG0985 Vesicle coat protein c 98.3 0.0078 1.7E-07 64.5 41.0 212 57-276 513-750 (1666)
96 PF04733 Coatomer_E: Coatomer 98.3 4.4E-05 9.5E-10 73.3 17.0 200 171-444 60-265 (290)
97 TIGR00756 PPR pentatricopeptid 98.3 1.6E-06 3.6E-11 53.5 4.3 34 501-534 2-35 (35)
98 KOG0624 dsRNA-activated protei 98.2 0.0039 8.4E-08 58.5 27.0 211 182-450 43-256 (504)
99 PF13812 PPR_3: Pentatricopept 98.2 2E-06 4.4E-11 52.7 4.2 33 500-532 2-34 (34)
100 KOG4340 Uncharacterized conser 98.2 0.0028 6E-08 58.2 24.9 337 180-599 13-372 (459)
101 TIGR03302 OM_YfiO outer membra 98.2 0.00071 1.5E-08 63.8 22.1 101 342-444 31-144 (235)
102 KOG0985 Vesicle coat protein c 98.1 0.02 4.2E-07 61.6 35.0 207 15-273 980-1189(1666)
103 KOG4340 Uncharacterized conser 98.1 0.00073 1.6E-08 61.9 19.6 290 215-599 13-336 (459)
104 KOG1070 rRNA processing protei 98.1 0.0022 4.8E-08 70.8 26.3 230 252-556 1460-1693(1710)
105 PRK04841 transcriptional regul 98.1 0.026 5.7E-07 65.1 37.2 350 20-444 342-720 (903)
106 KOG1128 Uncharacterized conser 98.0 0.0009 1.9E-08 69.0 20.8 97 345-444 520-616 (777)
107 KOG1070 rRNA processing protei 98.0 0.00038 8.1E-09 76.5 18.9 207 176-449 1457-1668(1710)
108 KOG1128 Uncharacterized conser 98.0 0.00085 1.8E-08 69.2 20.4 216 251-563 399-616 (777)
109 PF01535 PPR: PPR repeat; Int 98.0 5.8E-06 1.3E-10 49.3 3.3 31 178-208 1-31 (31)
110 PRK14720 transcript cleavage f 97.9 0.0048 1E-07 67.5 25.7 170 174-444 28-198 (906)
111 PF01535 PPR: PPR repeat; Int 97.9 9.4E-06 2E-10 48.4 3.2 31 500-530 1-31 (31)
112 TIGR03302 OM_YfiO outer membra 97.9 0.0018 3.8E-08 61.1 20.2 85 358-444 129-232 (235)
113 PLN02789 farnesyltranstransfer 97.9 0.011 2.4E-07 57.8 25.1 65 361-428 125-189 (320)
114 KOG1125 TPR repeat-containing 97.9 0.0046 1E-07 62.3 22.1 228 354-599 295-524 (579)
115 PLN02789 farnesyltranstransfer 97.9 0.021 4.6E-07 55.8 26.6 215 346-585 39-267 (320)
116 PF10037 MRP-S27: Mitochondria 97.9 0.025 5.4E-07 56.8 27.2 113 338-450 60-173 (429)
117 KOG1174 Anaphase-promoting com 97.8 0.038 8.3E-07 53.5 38.7 159 345-524 233-393 (564)
118 PF08579 RPM2: Mitochondrial r 97.8 0.0003 6.5E-09 54.7 9.8 91 94-190 26-117 (120)
119 PF08579 RPM2: Mitochondrial r 97.8 0.00028 6.2E-09 54.8 9.6 81 348-428 29-117 (120)
120 COG5010 TadD Flp pilus assembl 97.8 0.0035 7.6E-08 56.9 18.0 165 209-440 63-227 (257)
121 KOG0548 Molecular co-chaperone 97.8 0.0091 2E-07 59.7 22.3 191 383-599 227-418 (539)
122 PRK14720 transcript cleavage f 97.8 0.015 3.3E-07 63.8 25.7 162 349-561 88-250 (906)
123 PRK10370 formate-dependent nit 97.7 0.0075 1.6E-07 54.6 19.3 105 342-450 71-178 (198)
124 PRK10370 formate-dependent nit 97.7 0.0024 5.2E-08 57.8 16.0 127 393-537 52-181 (198)
125 KOG1127 TPR repeat-containing 97.7 0.12 2.6E-06 55.9 30.8 111 11-128 518-629 (1238)
126 COG5010 TadD Flp pilus assembl 97.7 0.0036 7.8E-08 56.8 16.5 166 340-525 62-228 (257)
127 PRK15179 Vi polysaccharide bio 97.7 0.023 5E-07 61.6 25.6 134 341-492 83-216 (694)
128 KOG1125 TPR repeat-containing 97.7 0.0041 8.9E-08 62.6 18.1 230 187-443 295-526 (579)
129 PRK15359 type III secretion sy 97.6 0.0036 7.7E-08 53.5 15.4 99 347-450 27-125 (144)
130 PF10037 MRP-S27: Mitochondria 97.6 0.00078 1.7E-08 67.3 12.7 115 497-615 64-180 (429)
131 KOG4162 Predicted calmodulin-b 97.6 0.13 2.8E-06 54.1 42.7 390 173-631 319-779 (799)
132 PRK15179 Vi polysaccharide bio 97.6 0.043 9.4E-07 59.5 25.7 209 351-588 59-270 (694)
133 PRK15359 type III secretion sy 97.5 0.0044 9.6E-08 52.9 14.5 120 484-615 13-132 (144)
134 TIGR02552 LcrH_SycD type III s 97.5 0.0046 9.9E-08 52.3 14.2 110 498-615 16-125 (135)
135 KOG3060 Uncharacterized conser 97.5 0.076 1.6E-06 48.2 24.1 81 478-561 100-181 (289)
136 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0037 8E-08 62.3 15.2 114 476-600 181-295 (395)
137 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.003 6.5E-08 63.0 14.4 125 251-442 170-295 (395)
138 KOG1127 TPR repeat-containing 97.4 0.27 5.8E-06 53.4 33.6 183 34-241 473-659 (1238)
139 TIGR02552 LcrH_SycD type III s 97.4 0.0029 6.2E-08 53.6 12.2 106 340-450 12-118 (135)
140 KOG1914 mRNA cleavage and poly 97.4 0.18 4E-06 50.8 34.8 175 360-552 347-528 (656)
141 KOG3081 Vesicle coat complex C 97.4 0.037 8E-07 50.5 18.7 122 387-528 115-236 (299)
142 KOG3060 Uncharacterized conser 97.4 0.11 2.4E-06 47.1 21.1 84 357-443 99-182 (289)
143 COG4783 Putative Zn-dependent 97.3 0.21 4.7E-06 49.8 26.1 183 174-444 271-454 (484)
144 COG4783 Putative Zn-dependent 97.3 0.027 5.8E-07 56.0 17.8 137 425-602 316-454 (484)
145 PF09976 TPR_21: Tetratricopep 97.3 0.0099 2.1E-07 50.9 13.6 115 477-599 24-144 (145)
146 PF09976 TPR_21: Tetratricopep 97.3 0.014 3E-07 50.0 14.5 94 178-275 13-110 (145)
147 KOG0624 dsRNA-activated protei 97.2 0.19 4.1E-06 47.7 25.6 204 348-559 42-248 (504)
148 cd00189 TPR Tetratricopeptide 97.2 0.0061 1.3E-07 47.3 10.8 94 347-443 3-96 (100)
149 PRK10866 outer membrane biogen 97.2 0.15 3.2E-06 47.9 21.5 179 347-560 35-238 (243)
150 PF06239 ECSIT: Evolutionarily 97.2 0.0044 9.5E-08 54.8 10.3 91 339-430 42-153 (228)
151 KOG3081 Vesicle coat complex C 97.1 0.21 4.6E-06 45.8 24.2 84 357-443 186-270 (299)
152 PF06239 ECSIT: Evolutionarily 97.1 0.013 2.8E-07 52.0 12.5 103 379-514 46-153 (228)
153 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.014 3E-07 47.9 12.6 97 346-444 4-105 (119)
154 KOG1914 mRNA cleavage and poly 97.1 0.4 8.7E-06 48.5 36.6 184 396-601 309-500 (656)
155 PF14938 SNAP: Soluble NSF att 97.0 0.2 4.3E-06 48.5 21.1 218 346-615 37-275 (282)
156 PF14938 SNAP: Soluble NSF att 97.0 0.049 1.1E-06 52.7 16.8 90 354-443 124-224 (282)
157 TIGR02795 tol_pal_ybgF tol-pal 97.0 0.026 5.7E-07 46.2 13.2 101 501-603 4-106 (119)
158 PF12895 Apc3: Anaphase-promot 96.8 0.0043 9.2E-08 47.3 6.3 78 478-558 3-82 (84)
159 PF12895 Apc3: Anaphase-promot 96.8 0.0051 1.1E-07 46.9 6.7 80 512-598 2-83 (84)
160 PF04840 Vps16_C: Vps16, C-ter 96.8 0.51 1.1E-05 46.1 22.0 84 340-440 204-287 (319)
161 KOG0548 Molecular co-chaperone 96.7 0.8 1.7E-05 46.4 32.9 94 180-276 227-324 (539)
162 cd00189 TPR Tetratricopeptide 96.7 0.022 4.8E-07 44.0 10.3 94 253-409 3-97 (100)
163 PF14559 TPR_19: Tetratricopep 96.7 0.006 1.3E-07 44.2 6.0 63 355-421 2-64 (68)
164 PF05843 Suf: Suppressor of fo 96.6 0.03 6.6E-07 53.9 12.3 132 251-444 2-136 (280)
165 PF12921 ATP13: Mitochondrial 96.6 0.025 5.4E-07 46.5 9.9 102 250-395 2-103 (126)
166 PF04840 Vps16_C: Vps16, C-ter 96.6 0.8 1.7E-05 44.8 24.2 85 179-276 179-263 (319)
167 PF05843 Suf: Suppressor of fo 96.6 0.033 7.2E-07 53.7 12.4 145 346-542 3-148 (280)
168 PLN03088 SGT1, suppressor of 96.5 0.055 1.2E-06 54.2 13.9 95 351-450 9-103 (356)
169 PRK02603 photosystem I assembl 96.5 0.18 4E-06 44.6 15.6 64 380-443 35-100 (172)
170 PRK15363 pathogenicity island 96.4 0.099 2.2E-06 44.3 12.5 95 347-444 38-132 (157)
171 PF12921 ATP13: Mitochondrial 96.4 0.052 1.1E-06 44.6 10.6 94 498-615 1-95 (126)
172 KOG2041 WD40 repeat protein [G 96.4 1.6 3.5E-05 45.7 26.2 50 346-405 854-903 (1189)
173 PRK10153 DNA-binding transcrip 96.3 0.48 1E-05 49.8 19.8 164 409-590 331-502 (517)
174 KOG2053 Mitochondrial inherita 96.3 2.1 4.5E-05 46.4 43.2 76 536-614 438-514 (932)
175 PRK02603 photosystem I assembl 96.3 0.14 3.1E-06 45.2 13.8 85 498-588 34-121 (172)
176 PF12688 TPR_5: Tetratrico pep 96.3 0.13 2.8E-06 41.9 12.1 92 507-600 9-102 (120)
177 KOG1538 Uncharacterized conser 96.3 0.1 2.3E-06 53.5 13.8 243 340-604 552-848 (1081)
178 KOG2041 WD40 repeat protein [G 96.2 1.9 4.2E-05 45.2 29.3 53 499-551 1021-1074(1189)
179 PLN03088 SGT1, suppressor of 96.2 0.099 2.2E-06 52.4 13.5 99 508-615 11-110 (356)
180 PF13525 YfiO: Outer membrane 96.1 1.1 2.3E-05 40.9 19.4 168 349-553 10-197 (203)
181 CHL00033 ycf3 photosystem I as 96.1 0.13 2.8E-06 45.3 12.4 64 380-443 35-100 (168)
182 KOG0553 TPR repeat-containing 96.0 0.091 2E-06 49.0 11.0 96 510-615 92-189 (304)
183 PRK10153 DNA-binding transcrip 96.0 0.42 9.2E-06 50.3 17.4 57 477-537 433-489 (517)
184 PF13432 TPR_16: Tetratricopep 96.0 0.029 6.3E-07 40.1 6.4 54 389-443 6-59 (65)
185 PF03704 BTAD: Bacterial trans 96.0 0.042 9.1E-07 47.1 8.4 71 346-418 64-139 (146)
186 PF14559 TPR_19: Tetratricopep 95.9 0.029 6.3E-07 40.5 6.3 48 512-560 4-51 (68)
187 PF03704 BTAD: Bacterial trans 95.9 0.06 1.3E-06 46.2 9.0 76 501-577 64-140 (146)
188 KOG1538 Uncharacterized conser 95.8 0.4 8.7E-06 49.4 15.4 82 177-273 598-681 (1081)
189 PF07079 DUF1347: Protein of u 95.8 2.4 5.2E-05 42.3 39.7 150 29-223 16-178 (549)
190 CHL00033 ycf3 photosystem I as 95.8 0.43 9.3E-06 42.0 14.3 97 498-599 34-139 (168)
191 PRK10866 outer membrane biogen 95.8 1.8 3.9E-05 40.7 19.2 177 183-442 38-239 (243)
192 PF08631 SPO22: Meiosis protei 95.7 2.2 4.7E-05 41.2 26.9 102 345-450 85-192 (278)
193 PF13414 TPR_11: TPR repeat; P 95.7 0.054 1.2E-06 39.2 6.8 61 345-407 4-65 (69)
194 PF13424 TPR_12: Tetratricopep 95.6 0.064 1.4E-06 40.0 7.3 64 536-599 7-72 (78)
195 PF13432 TPR_16: Tetratricopep 95.6 0.071 1.5E-06 38.0 7.1 58 350-409 3-60 (65)
196 PF12688 TPR_5: Tetratrico pep 95.6 0.79 1.7E-05 37.3 13.8 56 388-443 9-66 (120)
197 PF13170 DUF4003: Protein of u 95.6 2.5 5.3E-05 40.9 21.4 138 396-542 78-225 (297)
198 COG4700 Uncharacterized protei 95.5 1.5 3.2E-05 38.1 16.9 137 495-634 85-221 (251)
199 PRK15363 pathogenicity island 95.3 0.23 5E-06 42.1 10.0 84 476-562 47-131 (157)
200 COG4235 Cytochrome c biogenesi 95.3 0.35 7.6E-06 45.5 12.2 119 14-137 151-269 (287)
201 KOG2053 Mitochondrial inherita 95.3 5.6 0.00012 43.3 44.7 85 474-561 446-534 (932)
202 PRK10803 tol-pal system protei 95.3 0.41 8.9E-06 45.4 12.8 102 345-450 144-250 (263)
203 PRK10803 tol-pal system protei 95.2 0.3 6.4E-06 46.3 11.6 105 499-609 143-251 (263)
204 PF04053 Coatomer_WDAD: Coatom 94.9 1.3 2.9E-05 45.5 16.2 158 185-440 269-427 (443)
205 PF13371 TPR_9: Tetratricopept 94.8 0.14 3E-06 37.5 6.9 55 353-409 4-58 (73)
206 PF13281 DUF4071: Domain of un 94.7 4.9 0.00011 39.9 18.8 170 347-528 144-334 (374)
207 KOG0553 TPR repeat-containing 94.6 0.29 6.3E-06 45.8 9.4 93 352-450 89-182 (304)
208 PF13414 TPR_11: TPR repeat; P 94.6 0.13 2.9E-06 37.1 6.1 63 498-561 2-65 (69)
209 PF13281 DUF4071: Domain of un 94.6 5.5 0.00012 39.6 18.8 172 418-602 144-334 (374)
210 PF13424 TPR_12: Tetratricopep 94.5 0.14 3.1E-06 38.1 6.3 64 499-562 5-74 (78)
211 KOG3941 Intermediate in Toll s 94.5 0.35 7.6E-06 44.7 9.5 120 88-241 62-188 (406)
212 KOG2280 Vacuolar assembly/sort 94.3 8.8 0.00019 41.0 34.5 99 477-598 697-795 (829)
213 COG3898 Uncharacterized membra 94.0 6.6 0.00014 38.5 27.4 229 349-606 159-396 (531)
214 PF13525 YfiO: Outer membrane 93.9 3.7 8.1E-05 37.4 15.6 143 346-519 44-198 (203)
215 KOG2796 Uncharacterized conser 93.9 5.2 0.00011 36.9 17.5 143 383-538 180-323 (366)
216 KOG1130 Predicted G-alpha GTPa 93.6 3.6 7.7E-05 40.5 14.8 99 501-599 237-341 (639)
217 COG4235 Cytochrome c biogenesi 93.5 2.9 6.4E-05 39.5 13.9 104 343-450 155-261 (287)
218 PF13512 TPR_18: Tetratricopep 93.1 3.8 8.3E-05 34.3 12.6 82 349-432 15-99 (142)
219 PLN03098 LPA1 LOW PSII ACCUMUL 93.0 1.8 3.8E-05 43.7 12.3 63 498-562 74-140 (453)
220 PF07035 Mic1: Colon cancer-as 93.0 5 0.00011 34.8 13.6 103 484-600 14-116 (167)
221 KOG3941 Intermediate in Toll s 93.0 1.7 3.6E-05 40.4 11.0 88 498-589 66-174 (406)
222 PF04097 Nic96: Nup93/Nic96; 92.8 17 0.00036 39.6 23.2 224 24-276 116-353 (613)
223 PF04053 Coatomer_WDAD: Coatom 92.8 1.4 3E-05 45.3 11.9 133 177-405 295-427 (443)
224 smart00299 CLH Clathrin heavy 92.8 5.2 0.00011 33.7 14.0 27 97-123 11-37 (140)
225 smart00299 CLH Clathrin heavy 92.7 5.5 0.00012 33.6 14.6 45 180-225 10-54 (140)
226 COG4105 ComL DNA uptake lipopr 92.5 8.9 0.00019 35.6 19.3 181 344-560 35-230 (254)
227 PF13371 TPR_9: Tetratricopept 92.5 0.67 1.5E-05 33.8 6.9 61 387-450 2-62 (73)
228 PF10602 RPN7: 26S proteasome 92.4 2 4.3E-05 38.0 10.8 100 500-600 37-140 (177)
229 PF10300 DUF3808: Protein of u 92.4 4.6 0.0001 42.2 15.2 162 56-240 190-375 (468)
230 COG5107 RNA14 Pre-mRNA 3'-end 92.3 8.6 0.00019 38.5 15.5 141 382-546 399-547 (660)
231 COG4700 Uncharacterized protei 92.2 2.1 4.7E-05 37.1 10.1 105 16-123 86-190 (251)
232 PLN03098 LPA1 LOW PSII ACCUMUL 92.1 2.4 5.1E-05 42.8 11.9 65 343-409 74-141 (453)
233 PF07035 Mic1: Colon cancer-as 92.1 5.2 0.00011 34.6 12.6 47 171-221 23-69 (167)
234 KOG1130 Predicted G-alpha GTPa 92.0 2.3 5E-05 41.7 11.3 70 535-604 196-266 (639)
235 PRK15331 chaperone protein Sic 92.0 1.3 2.8E-05 37.9 8.7 89 352-443 45-133 (165)
236 PF10300 DUF3808: Protein of u 91.8 9 0.00019 40.1 16.5 117 477-600 246-374 (468)
237 PF13170 DUF4003: Protein of u 91.5 14 0.0003 35.8 19.7 133 480-615 78-224 (297)
238 COG1729 Uncharacterized protei 91.3 4.8 0.0001 37.6 12.2 102 20-129 143-249 (262)
239 KOG0687 26S proteasome regulat 90.7 13 0.00028 35.6 14.3 150 478-629 36-204 (393)
240 COG3629 DnrI DNA-binding trans 90.7 2.5 5.5E-05 40.0 10.1 77 346-424 155-236 (280)
241 COG3629 DnrI DNA-binding trans 90.7 3.3 7.1E-05 39.3 10.8 82 500-582 154-236 (280)
242 PF13512 TPR_18: Tetratricopep 90.6 4 8.6E-05 34.1 10.0 89 15-108 7-97 (142)
243 KOG4570 Uncharacterized conser 90.3 3.7 8.1E-05 38.8 10.5 107 338-446 58-166 (418)
244 PF10602 RPN7: 26S proteasome 90.0 4.4 9.6E-05 35.8 10.6 97 178-276 37-139 (177)
245 PRK15331 chaperone protein Sic 89.8 6.4 0.00014 33.8 10.8 84 476-561 49-132 (165)
246 KOG4555 TPR repeat-containing 89.7 7.2 0.00016 31.8 10.2 92 352-445 51-145 (175)
247 KOG0543 FKBP-type peptidyl-pro 89.4 12 0.00025 37.2 13.6 120 508-634 217-354 (397)
248 KOG0403 Neoplastic transformat 89.4 25 0.00055 35.3 17.0 71 472-547 517-587 (645)
249 PF04184 ST7: ST7 protein; In 89.2 26 0.00055 36.0 16.0 55 505-559 265-320 (539)
250 KOG2610 Uncharacterized conser 89.1 11 0.00024 36.2 12.6 82 477-559 188-272 (491)
251 PF13428 TPR_14: Tetratricopep 89.0 1.2 2.5E-05 28.7 4.7 35 347-383 4-38 (44)
252 KOG2796 Uncharacterized conser 89.0 19 0.00042 33.4 20.8 134 477-618 190-329 (366)
253 KOG2280 Vacuolar assembly/sort 88.5 40 0.00086 36.4 26.5 296 88-442 427-742 (829)
254 KOG0550 Molecular chaperone (D 88.3 29 0.00063 34.6 20.7 51 510-560 260-313 (486)
255 KOG4570 Uncharacterized conser 87.9 10 0.00022 36.1 11.5 105 409-529 58-165 (418)
256 PF08631 SPO22: Meiosis protei 87.8 27 0.00058 33.6 24.0 104 346-450 38-156 (278)
257 COG1729 Uncharacterized protei 87.8 11 0.00025 35.2 11.9 101 499-602 142-244 (262)
258 PF09205 DUF1955: Domain of un 87.6 14 0.00031 30.3 14.3 54 503-557 90-143 (161)
259 PRK11906 transcriptional regul 87.5 36 0.00078 34.8 17.7 167 416-597 252-431 (458)
260 KOG1920 IkappaB kinase complex 86.7 65 0.0014 36.9 21.8 80 349-440 970-1051(1265)
261 KOG0550 Molecular chaperone (D 86.6 37 0.0008 33.9 24.4 217 353-619 178-402 (486)
262 KOG4555 TPR repeat-containing 86.6 11 0.00024 30.8 9.5 91 508-603 52-145 (175)
263 PF09205 DUF1955: Domain of un 86.5 17 0.00036 29.9 13.0 121 477-605 15-152 (161)
264 KOG1920 IkappaB kinase complex 86.2 69 0.0015 36.7 22.3 22 255-276 970-991 (1265)
265 COG5187 RPN7 26S proteasome re 86.1 23 0.0005 33.3 12.6 99 531-629 112-215 (412)
266 KOG0543 FKBP-type peptidyl-pro 86.0 18 0.00039 35.9 12.7 97 351-450 215-324 (397)
267 KOG2610 Uncharacterized conser 85.7 36 0.00077 32.9 18.4 153 356-526 115-274 (491)
268 PF13929 mRNA_stabil: mRNA sta 85.6 8.4 0.00018 36.5 9.8 110 32-142 141-252 (292)
269 PF13176 TPR_7: Tetratricopept 85.5 1.9 4.1E-05 26.2 4.0 24 502-525 2-25 (36)
270 PF13176 TPR_7: Tetratricopept 85.4 1.7 3.8E-05 26.4 3.7 26 179-204 1-26 (36)
271 KOG2114 Vacuolar assembly/sort 84.3 24 0.00051 38.5 13.4 82 348-441 435-516 (933)
272 COG4455 ImpE Protein of avirul 84.3 7 0.00015 35.1 8.2 78 346-425 3-82 (273)
273 COG3118 Thioredoxin domain-con 83.6 42 0.00091 32.0 15.4 50 187-238 144-194 (304)
274 cd00923 Cyt_c_Oxidase_Va Cytoc 82.9 7.9 0.00017 29.7 6.8 47 515-561 23-69 (103)
275 PF02284 COX5A: Cytochrome c o 82.3 14 0.00031 28.7 8.1 45 517-561 28-72 (108)
276 COG4649 Uncharacterized protei 82.2 33 0.00071 29.8 14.2 30 503-532 171-200 (221)
277 KOG1585 Protein required for f 81.8 43 0.00094 30.9 14.0 92 346-438 152-250 (308)
278 PF13428 TPR_14: Tetratricopep 81.3 6.4 0.00014 25.1 5.4 27 383-409 4-30 (44)
279 PF13762 MNE1: Mitochondrial s 81.1 17 0.00037 30.6 9.0 86 56-141 41-128 (145)
280 KOG0276 Vesicle coat complex C 81.0 44 0.00095 35.1 13.3 81 344-440 666-746 (794)
281 PF09613 HrpB1_HrpK: Bacterial 80.7 36 0.00078 29.3 12.2 92 350-445 16-107 (160)
282 PF02259 FAT: FAT domain; Int 80.1 62 0.0013 32.3 15.0 69 532-601 144-212 (352)
283 KOG2297 Predicted translation 80.1 57 0.0012 31.2 12.9 176 50-272 161-343 (412)
284 KOG1585 Protein required for f 80.0 50 0.0011 30.5 15.7 215 340-597 23-251 (308)
285 PF02284 COX5A: Cytochrome c o 79.6 12 0.00027 29.0 7.0 41 334-374 35-75 (108)
286 COG3118 Thioredoxin domain-con 79.5 59 0.0013 31.1 16.3 57 351-409 141-197 (304)
287 PF13762 MNE1: Mitochondrial s 79.4 37 0.0008 28.7 10.8 98 336-433 29-133 (145)
288 PF13431 TPR_17: Tetratricopep 78.6 2.1 4.6E-05 25.6 2.3 24 377-400 10-33 (34)
289 COG5187 RPN7 26S proteasome re 78.6 45 0.00098 31.5 11.5 84 568-652 110-200 (412)
290 cd00923 Cyt_c_Oxidase_Va Cytoc 78.6 12 0.00026 28.7 6.6 38 336-373 34-71 (103)
291 COG4105 ComL DNA uptake lipopr 78.5 58 0.0013 30.4 18.7 64 55-122 36-100 (254)
292 KOG1941 Acetylcholine receptor 78.5 71 0.0015 31.4 15.2 228 356-599 18-272 (518)
293 PF13374 TPR_10: Tetratricopep 77.9 5.4 0.00012 24.8 4.3 27 500-526 3-29 (42)
294 PF00637 Clathrin: Region in C 77.3 0.38 8.3E-06 40.9 -1.8 81 472-559 15-95 (143)
295 PF10366 Vps39_1: Vacuolar sor 77.0 30 0.00065 27.6 9.0 27 501-527 41-67 (108)
296 KOG0276 Vesicle coat complex C 76.8 52 0.0011 34.6 12.5 51 347-404 695-745 (794)
297 TIGR02561 HrpB1_HrpK type III 76.7 45 0.00098 28.2 11.1 65 57-123 10-74 (153)
298 PF13929 mRNA_stabil: mRNA sta 76.2 74 0.0016 30.4 14.9 97 498-597 163-262 (292)
299 PF00637 Clathrin: Region in C 75.9 1.7 3.7E-05 36.9 1.8 84 183-276 13-96 (143)
300 PRK11906 transcriptional regul 75.9 57 0.0012 33.4 12.4 114 357-488 317-431 (458)
301 COG1747 Uncharacterized N-term 75.5 1.1E+02 0.0023 31.8 18.8 98 341-444 63-160 (711)
302 PF13374 TPR_10: Tetratricopep 75.3 7.9 0.00017 24.0 4.5 29 415-443 2-30 (42)
303 COG5107 RNA14 Pre-mRNA 3'-end 75.1 1E+02 0.0022 31.4 32.6 130 477-614 410-541 (660)
304 PF04097 Nic96: Nup93/Nic96; 74.5 1.4E+02 0.003 32.7 19.2 49 176-225 110-158 (613)
305 TIGR02561 HrpB1_HrpK type III 73.4 56 0.0012 27.7 11.6 55 354-410 20-74 (153)
306 PF07079 DUF1347: Protein of u 73.0 1.1E+02 0.0025 31.1 37.4 250 20-276 46-324 (549)
307 PF13431 TPR_17: Tetratricopep 72.8 4.6 0.0001 24.1 2.7 30 82-113 4-33 (34)
308 PF00515 TPR_1: Tetratricopept 72.2 12 0.00025 22.0 4.4 27 417-443 3-29 (34)
309 PHA02875 ankyrin repeat protei 71.6 64 0.0014 33.2 12.6 75 159-237 12-90 (413)
310 PF13174 TPR_6: Tetratricopept 71.6 9.7 0.00021 22.0 4.0 28 21-48 2-29 (33)
311 PF11207 DUF2989: Protein of u 71.4 38 0.00083 30.3 9.0 80 353-435 116-198 (203)
312 KOG4648 Uncharacterized conser 71.2 14 0.0003 35.6 6.6 51 508-560 106-157 (536)
313 PF11207 DUF2989: Protein of u 70.6 26 0.00057 31.3 7.8 80 190-270 119-198 (203)
314 COG2178 Predicted RNA-binding 70.5 28 0.00061 30.8 7.8 79 360-449 19-102 (204)
315 PF11848 DUF3368: Domain of un 70.2 16 0.00034 24.0 4.9 34 582-615 11-44 (48)
316 KOG2114 Vacuolar assembly/sort 70.2 1.8E+02 0.0039 32.2 25.1 87 175-276 429-516 (933)
317 COG4649 Uncharacterized protei 70.0 75 0.0016 27.7 15.6 133 415-561 59-194 (221)
318 KOG0991 Replication factor C, 69.7 92 0.002 28.7 12.6 100 509-611 169-276 (333)
319 PF00515 TPR_1: Tetratricopept 68.9 14 0.0003 21.7 4.3 28 500-527 2-29 (34)
320 KOG0687 26S proteasome regulat 68.7 1.2E+02 0.0026 29.5 12.7 117 529-651 65-188 (393)
321 PF04184 ST7: ST7 protein; In 68.1 1.6E+02 0.0034 30.7 16.6 66 476-542 271-339 (539)
322 KOG1550 Extracellular protein 67.1 1.9E+02 0.0041 31.2 15.5 151 360-529 228-394 (552)
323 COG4455 ImpE Protein of avirul 67.0 40 0.00086 30.5 8.1 45 477-523 14-59 (273)
324 KOG1941 Acetylcholine receptor 66.2 1.4E+02 0.0031 29.5 14.7 131 349-489 127-271 (518)
325 PF09613 HrpB1_HrpK: Bacterial 65.6 89 0.0019 26.9 12.3 94 510-611 21-115 (160)
326 PF07719 TPR_2: Tetratricopept 64.6 24 0.00051 20.5 4.7 27 347-373 4-30 (34)
327 COG4785 NlpI Lipoprotein NlpI, 64.5 1.1E+02 0.0025 27.8 13.9 175 10-207 90-267 (297)
328 PF10366 Vps39_1: Vacuolar sor 64.0 36 0.00077 27.2 6.8 26 253-278 42-67 (108)
329 PF07719 TPR_2: Tetratricopept 63.6 22 0.00048 20.6 4.4 27 417-443 3-29 (34)
330 COG3947 Response regulator con 63.5 45 0.00097 31.7 8.1 56 349-406 284-339 (361)
331 COG0457 NrfG FOG: TPR repeat [ 62.9 1.2E+02 0.0025 27.3 25.8 226 357-602 36-265 (291)
332 PF06552 TOM20_plant: Plant sp 61.2 1.2E+02 0.0025 26.8 10.0 97 501-603 30-137 (186)
333 TIGR03504 FimV_Cterm FimV C-te 60.6 17 0.00038 23.3 3.6 26 579-604 5-30 (44)
334 PF11848 DUF3368: Domain of un 59.8 38 0.00083 22.2 5.2 34 390-423 12-45 (48)
335 KOG4077 Cytochrome c oxidase, 59.4 60 0.0013 26.5 7.0 45 517-561 67-111 (149)
336 PF11838 ERAP1_C: ERAP1-like C 59.2 1.1E+02 0.0024 30.0 11.2 37 176-212 200-237 (324)
337 PF06552 TOM20_plant: Plant sp 58.9 1.2E+02 0.0026 26.8 9.3 41 193-241 96-136 (186)
338 PF07721 TPR_4: Tetratricopept 58.5 15 0.00032 20.3 2.7 23 21-43 3-25 (26)
339 TIGR03504 FimV_Cterm FimV C-te 57.9 26 0.00056 22.5 4.0 20 388-407 7-26 (44)
340 PF10579 Rapsyn_N: Rapsyn N-te 57.8 33 0.00073 25.3 5.0 46 511-556 18-65 (80)
341 PHA02875 ankyrin repeat protei 57.4 2.2E+02 0.0048 29.2 13.4 107 159-274 45-156 (413)
342 PRK11619 lytic murein transgly 57.2 3E+02 0.0065 30.3 32.2 229 343-600 128-373 (644)
343 KOG3364 Membrane protein invol 55.2 1.1E+02 0.0025 25.4 8.1 77 51-130 29-106 (149)
344 PF14669 Asp_Glu_race_2: Putat 54.3 1.6E+02 0.0035 26.2 12.7 60 217-276 137-207 (233)
345 PF13181 TPR_8: Tetratricopept 52.1 40 0.00087 19.5 4.2 27 501-527 3-29 (34)
346 TIGR02508 type_III_yscG type I 51.6 1.2E+02 0.0025 23.8 8.0 47 477-529 52-98 (115)
347 PF07163 Pex26: Pex26 protein; 51.5 1.5E+02 0.0032 28.2 9.3 89 349-438 88-181 (309)
348 PF10579 Rapsyn_N: Rapsyn N-te 51.2 31 0.00066 25.5 3.9 48 476-523 18-67 (80)
349 PF11846 DUF3366: Domain of un 50.8 79 0.0017 28.4 7.7 52 546-600 120-171 (193)
350 PRK10564 maltose regulon perip 50.5 29 0.00063 33.2 4.8 44 174-217 253-297 (303)
351 PRK10564 maltose regulon perip 50.4 30 0.00065 33.1 4.9 45 497-541 254-299 (303)
352 PF11663 Toxin_YhaV: Toxin wit 49.9 16 0.00036 30.0 2.7 32 476-509 107-138 (140)
353 PF11846 DUF3366: Domain of un 49.9 53 0.0011 29.5 6.4 54 66-122 120-173 (193)
354 COG5108 RPO41 Mitochondrial DN 49.5 1E+02 0.0022 33.0 8.7 76 349-427 33-115 (1117)
355 PF02259 FAT: FAT domain; Int 49.3 2.8E+02 0.006 27.5 16.6 51 26-83 5-55 (352)
356 COG3898 Uncharacterized membra 48.4 3E+02 0.0065 27.7 27.5 294 179-561 84-390 (531)
357 PF14689 SPOB_a: Sensor_kinase 48.1 51 0.0011 23.1 4.7 23 578-600 28-50 (62)
358 TIGR02508 type_III_yscG type I 47.9 1.2E+02 0.0025 23.8 6.6 80 359-446 20-99 (115)
359 PF11663 Toxin_YhaV: Toxin wit 47.6 11 0.00024 31.0 1.4 31 583-615 105-135 (140)
360 KOG0508 Ankyrin repeat protein 47.6 2.9E+02 0.0064 28.4 11.2 94 338-438 108-203 (615)
361 COG3947 Response regulator con 47.5 2.7E+02 0.0058 26.8 14.4 60 383-443 282-341 (361)
362 KOG1550 Extracellular protein 47.1 4E+02 0.0087 28.8 22.0 284 193-561 228-536 (552)
363 KOG0403 Neoplastic transformat 47.0 3.4E+02 0.0073 27.8 16.8 61 537-604 512-574 (645)
364 KOG2659 LisH motif-containing 44.8 2.5E+02 0.0055 25.8 9.9 96 497-598 24-128 (228)
365 KOG2300 Uncharacterized conser 44.8 3.8E+02 0.0083 27.8 28.6 93 505-599 329-430 (629)
366 PF14669 Asp_Glu_race_2: Putat 44.8 2.3E+02 0.005 25.3 14.4 68 171-238 2-77 (233)
367 PF07575 Nucleopor_Nup85: Nup8 43.1 4.7E+02 0.01 28.4 15.8 63 343-408 404-466 (566)
368 COG5108 RPO41 Mitochondrial DN 42.4 1.4E+02 0.0031 32.0 8.5 80 504-584 33-114 (1117)
369 COG5159 RPN6 26S proteasome re 42.1 3.2E+02 0.0069 26.1 17.4 55 503-557 129-188 (421)
370 PF10475 DUF2450: Protein of u 41.0 3.1E+02 0.0067 26.6 10.6 53 385-443 103-155 (291)
371 KOG4077 Cytochrome c oxidase, 41.0 1.2E+02 0.0027 24.8 6.2 40 335-374 75-114 (149)
372 PRK14956 DNA polymerase III su 40.9 2.4E+02 0.0052 29.6 10.0 107 74-218 183-289 (484)
373 COG5159 RPN6 26S proteasome re 40.9 3.3E+02 0.0072 26.0 10.4 74 510-583 14-94 (421)
374 COG0735 Fur Fe2+/Zn2+ uptake r 40.1 1.4E+02 0.0031 25.3 7.1 65 485-550 7-71 (145)
375 COG1747 Uncharacterized N-term 40.1 4.6E+02 0.01 27.5 19.5 64 378-444 64-127 (711)
376 PF11817 Foie-gras_1: Foie gra 40.0 2.1E+02 0.0046 26.9 9.1 62 539-600 183-245 (247)
377 KOG2908 26S proteasome regulat 39.9 1.7E+02 0.0038 28.6 8.1 63 544-607 85-154 (380)
378 KOG1258 mRNA processing protei 39.3 5.1E+02 0.011 27.7 31.9 185 343-549 296-490 (577)
379 PRK15180 Vi polysaccharide bio 39.2 2E+02 0.0044 29.5 8.8 116 477-600 302-418 (831)
380 PF14689 SPOB_a: Sensor_kinase 39.2 1.1E+02 0.0024 21.3 5.3 23 504-526 28-50 (62)
381 PF04090 RNA_pol_I_TF: RNA pol 39.2 2.9E+02 0.0063 24.9 9.1 52 19-70 41-92 (199)
382 cd08819 CARD_MDA5_2 Caspase ac 38.0 1.7E+02 0.0037 22.2 6.2 66 363-435 21-86 (88)
383 PF03745 DUF309: Domain of unk 38.0 1.4E+02 0.0031 20.9 5.7 49 390-438 9-62 (62)
384 PF08311 Mad3_BUB1_I: Mad3/BUB 37.9 2.2E+02 0.0047 23.5 7.7 44 362-405 81-124 (126)
385 PRK08691 DNA polymerase III su 37.7 2.6E+02 0.0056 30.9 10.0 37 177-214 246-282 (709)
386 PF05373 Pro_3_hydrox_C: L-pro 37.4 50 0.0011 25.7 3.5 69 13-82 21-92 (101)
387 KOG4234 TPR repeat-containing 37.3 3.2E+02 0.0068 24.7 8.6 97 508-613 104-206 (271)
388 smart00638 LPD_N Lipoprotein N 36.5 5.9E+02 0.013 27.6 22.1 65 52-125 308-372 (574)
389 PRK14958 DNA polymerase III su 36.1 3.8E+02 0.0082 28.6 11.0 39 175-214 244-282 (509)
390 KOG4648 Uncharacterized conser 36.0 1.6E+02 0.0035 28.7 7.3 94 351-449 104-197 (536)
391 KOG2066 Vacuolar assembly/sort 35.9 6.5E+02 0.014 28.0 19.1 74 346-427 394-467 (846)
392 PRK07764 DNA polymerase III su 35.8 7.2E+02 0.016 28.4 14.8 45 480-526 181-226 (824)
393 PF02847 MA3: MA3 domain; Int 35.7 1.4E+02 0.003 23.8 6.3 61 348-411 6-68 (113)
394 COG0457 NrfG FOG: TPR repeat [ 35.5 3.2E+02 0.0069 24.2 24.6 201 344-561 59-263 (291)
395 KOG0508 Ankyrin repeat protein 34.9 3.3E+02 0.0071 28.1 9.4 53 337-389 329-385 (615)
396 PF10155 DUF2363: Uncharacteri 34.6 2.6E+02 0.0057 23.0 12.4 121 395-525 4-124 (126)
397 KOG2062 26S proteasome regulat 33.9 6.9E+02 0.015 27.7 22.5 182 74-278 40-238 (929)
398 TIGR01503 MthylAspMut_E methyl 33.7 3.2E+02 0.0069 28.2 9.2 227 359-642 29-276 (480)
399 COG2976 Uncharacterized protei 33.3 3.6E+02 0.0079 24.2 10.6 90 505-603 95-189 (207)
400 PF08424 NRDE-2: NRDE-2, neces 33.2 3.1E+02 0.0067 27.1 9.4 117 10-128 56-190 (321)
401 PF12862 Apc5: Anaphase-promot 33.2 2.2E+02 0.0048 21.8 7.0 22 580-601 48-69 (94)
402 PF07064 RIC1: RIC1; InterPro 33.0 4.3E+02 0.0094 25.1 15.7 29 178-206 83-111 (258)
403 PRK14963 DNA polymerase III su 33.0 3.9E+02 0.0085 28.4 10.5 36 177-213 242-277 (504)
404 PF14853 Fis1_TPR_C: Fis1 C-te 32.4 1.6E+02 0.0035 19.9 5.5 29 420-450 6-34 (53)
405 KOG4567 GTPase-activating prot 32.4 2.9E+02 0.0062 26.8 8.1 70 519-597 263-342 (370)
406 PHA03100 ankyrin repeat protei 32.1 6.1E+02 0.013 26.5 13.4 106 160-274 84-197 (480)
407 PF07827 KNTase_C: KNTase C-te 31.8 2.1E+02 0.0046 23.9 6.4 108 115-240 5-119 (143)
408 cd00280 TRFH Telomeric Repeat 31.5 3.2E+02 0.007 24.3 7.7 21 541-561 118-138 (200)
409 KOG0686 COP9 signalosome, subu 31.4 5.7E+02 0.012 26.0 13.5 90 346-439 152-253 (466)
410 PF08424 NRDE-2: NRDE-2, neces 31.3 5.2E+02 0.011 25.5 15.2 124 481-608 48-190 (321)
411 PF09454 Vps23_core: Vps23 cor 31.2 1.4E+02 0.003 21.2 4.6 52 172-224 3-54 (65)
412 PF02847 MA3: MA3 domain; Int 30.1 2.5E+02 0.0055 22.2 6.9 65 383-449 5-71 (113)
413 PF09454 Vps23_core: Vps23 cor 30.0 1.2E+02 0.0025 21.6 4.1 49 497-546 6-54 (65)
414 PRK15180 Vi polysaccharide bio 29.8 6.5E+02 0.014 26.1 11.4 16 32-47 44-59 (831)
415 PF11768 DUF3312: Protein of u 29.6 7.1E+02 0.015 26.5 12.6 67 383-449 411-478 (545)
416 PLN03025 replication factor C 29.4 4.6E+02 0.01 25.8 9.9 104 74-217 161-264 (319)
417 smart00028 TPR Tetratricopepti 28.6 1E+02 0.0022 16.4 3.9 25 347-371 4-28 (34)
418 PRK13342 recombination factor 28.1 6.8E+02 0.015 25.8 17.3 67 179-245 229-303 (413)
419 COG0735 Fur Fe2+/Zn2+ uptake r 27.9 2.5E+02 0.0054 23.8 6.6 47 383-429 23-69 (145)
420 smart00386 HAT HAT (Half-A-TPR 27.8 1E+02 0.0022 17.2 3.2 16 359-374 2-17 (33)
421 KOG1586 Protein required for f 27.7 5.1E+02 0.011 24.2 15.5 22 426-447 165-186 (288)
422 KOG0890 Protein kinase of the 27.7 1.4E+03 0.031 29.4 26.7 88 349-439 1454-1542(2382)
423 PF07575 Nucleopor_Nup85: Nup8 27.3 1.6E+02 0.0035 31.9 6.8 32 189-220 507-538 (566)
424 PF09477 Type_III_YscG: Bacter 27.3 3.2E+02 0.007 21.8 7.6 83 356-446 18-100 (116)
425 KOG2908 26S proteasome regulat 27.0 5.3E+02 0.011 25.5 9.0 59 385-443 80-143 (380)
426 PF13934 ELYS: Nuclear pore co 27.0 5.1E+02 0.011 24.0 9.6 116 383-521 79-198 (226)
427 PF14744 WASH-7_mid: WASH comp 26.9 1.2E+02 0.0027 29.7 5.0 56 588-643 281-336 (350)
428 PF07163 Pex26: Pex26 protein; 26.9 5.7E+02 0.012 24.5 10.8 90 386-487 89-181 (309)
429 cd00245 Glm_e Coenzyme B12-dep 26.7 2.2E+02 0.0048 29.2 7.0 186 429-642 25-233 (428)
430 PF12862 Apc5: Anaphase-promot 26.7 2.9E+02 0.0064 21.1 8.5 58 510-567 9-74 (94)
431 PF12926 MOZART2: Mitotic-spin 26.6 2.9E+02 0.0062 21.0 5.8 43 401-443 29-71 (88)
432 KOG2066 Vacuolar assembly/sort 26.4 9.4E+02 0.02 26.8 27.3 156 73-276 372-531 (846)
433 PF08311 Mad3_BUB1_I: Mad3/BUB 26.2 2.7E+02 0.0059 22.9 6.4 42 517-558 81-123 (126)
434 COG5210 GTPase-activating prot 26.0 6.1E+02 0.013 26.9 10.7 123 483-616 361-487 (496)
435 PF02607 B12-binding_2: B12 bi 25.9 1.5E+02 0.0033 21.6 4.5 39 188-226 12-50 (79)
436 PF11768 DUF3312: Protein of u 25.9 3.3E+02 0.0071 28.8 8.0 103 503-608 412-529 (545)
437 PRK06645 DNA polymerase III su 25.8 5.3E+02 0.012 27.4 9.9 35 178-213 259-293 (507)
438 PF09090 MIF4G_like_2: MIF4G l 25.7 5.6E+02 0.012 24.2 9.4 115 16-132 8-131 (253)
439 TIGR03184 DNA_S_dndE DNA sulfu 25.7 3.4E+02 0.0074 21.5 6.9 36 191-226 61-98 (105)
440 PRK09857 putative transposase; 25.6 5.1E+02 0.011 25.2 9.1 66 537-607 209-274 (292)
441 PRK07764 DNA polymerase III su 25.5 1.1E+03 0.023 27.1 14.5 28 182-210 253-280 (824)
442 PRK11639 zinc uptake transcrip 25.4 4.1E+02 0.009 23.2 7.8 58 85-143 18-75 (169)
443 cd07153 Fur_like Ferric uptake 24.9 2E+02 0.0043 23.0 5.4 49 182-230 5-53 (116)
444 cd07153 Fur_like Ferric uptake 24.8 1.9E+02 0.0042 23.1 5.4 46 98-143 5-50 (116)
445 KOG2034 Vacuolar sorting prote 24.4 1.1E+03 0.023 26.8 26.3 49 383-440 507-555 (911)
446 cd08819 CARD_MDA5_2 Caspase ac 24.1 3.3E+02 0.0071 20.8 6.7 66 483-554 21-86 (88)
447 PF07064 RIC1: RIC1; InterPro 24.1 6.3E+02 0.014 24.0 13.2 23 182-204 184-206 (258)
448 KOG0890 Protein kinase of the 24.0 1.7E+03 0.036 28.9 22.3 85 182-278 1388-1477(2382)
449 KOG4279 Serine/threonine prote 23.8 1E+03 0.022 26.4 11.7 221 400-640 145-400 (1226)
450 PRK14962 DNA polymerase III su 23.6 8.8E+02 0.019 25.5 13.4 133 74-245 179-317 (472)
451 COG2909 MalT ATP-dependent tra 23.5 1.1E+03 0.024 26.7 34.1 53 356-408 470-525 (894)
452 PRK13342 recombination factor 23.3 8.3E+02 0.018 25.1 20.2 37 512-548 243-279 (413)
453 KOG0991 Replication factor C, 23.3 6.1E+02 0.013 23.6 11.8 49 497-547 237-285 (333)
454 smart00804 TAP_C C-terminal do 23.2 84 0.0018 22.1 2.4 25 357-381 38-62 (63)
455 PF04090 RNA_pol_I_TF: RNA pol 23.2 5.6E+02 0.012 23.1 9.5 46 178-224 42-88 (199)
456 KOG1586 Protein required for f 22.9 6.3E+02 0.014 23.6 15.2 85 548-634 128-223 (288)
457 KOG3807 Predicted membrane pro 22.5 7.4E+02 0.016 24.3 10.3 54 544-600 285-338 (556)
458 COG4785 NlpI Lipoprotein NlpI, 22.4 6.2E+02 0.013 23.3 16.8 84 358-444 79-162 (297)
459 PRK08691 DNA polymerase III su 22.4 1.1E+03 0.024 26.3 14.8 33 575-608 248-280 (709)
460 KOG4567 GTPase-activating prot 21.8 5E+02 0.011 25.2 7.7 60 482-546 261-320 (370)
461 PHA03100 ankyrin repeat protei 21.8 9.3E+02 0.02 25.2 14.2 58 386-449 179-244 (480)
462 PF01475 FUR: Ferric uptake re 21.7 2.3E+02 0.0049 22.9 5.2 51 180-230 10-60 (120)
463 COG4003 Uncharacterized protei 21.6 1.9E+02 0.0041 21.4 3.9 44 98-142 36-79 (98)
464 PRK13341 recombination factor 21.0 1.2E+03 0.026 26.2 20.3 38 511-548 270-307 (725)
465 PF02607 B12-binding_2: B12 bi 20.8 1.7E+02 0.0036 21.4 3.9 37 393-429 14-50 (79)
466 KOG2168 Cullins [Cell cycle co 20.8 1.2E+03 0.027 26.3 21.9 45 181-228 329-375 (835)
467 cd00280 TRFH Telomeric Repeat 20.7 6.1E+02 0.013 22.6 10.6 49 396-444 85-140 (200)
468 PF10345 Cohesin_load: Cohesin 20.5 1.1E+03 0.025 25.7 40.8 180 18-205 58-253 (608)
469 PF01475 FUR: Ferric uptake re 20.4 2.3E+02 0.0049 22.9 4.9 49 95-143 9-57 (120)
470 PF09670 Cas_Cas02710: CRISPR- 20.4 9.1E+02 0.02 24.5 11.6 121 387-527 138-269 (379)
471 KOG1464 COP9 signalosome, subu 20.3 7.5E+02 0.016 23.5 17.9 180 344-527 65-260 (440)
472 PRK09687 putative lyase; Provi 20.2 7.8E+02 0.017 23.7 22.5 18 52-69 35-52 (280)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.8e-72 Score=626.37 Aligned_cols=593 Identities=15% Similarity=0.074 Sum_probs=467.6
Q ss_pred ccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhH-----------------------------------HH
Q 048743 15 EGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVV-----------------------------------NR 59 (653)
Q Consensus 15 ~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------------------------------~~ 59 (653)
.+|+..+++.++.++++.|++++|..+|++|.+.+..|+..+| |.
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 4667778888999999999999999999998886655555554 55
Q ss_pred HHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHh
Q 048743 60 FITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMV 139 (653)
Q Consensus 60 ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 139 (653)
+|..|++.|+ ++.|+++|.+|. .||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.++.
T Consensus 127 li~~~~~~g~---~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 127 MLSMFVRFGE---LVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred HHHHHHhCCC---hHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence 5666666666 678888887773 37899999999999999999999999999999999999999999999886
Q ss_pred hcccc-----------------cccchHHHHHHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHH
Q 048743 140 KTEIG-----------------TCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMEL 202 (653)
Q Consensus 140 ~~~~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~ 202 (653)
+.+.- +....+.++.++.++|+++.|+++|+.+..||.++||+||.+|++.|++++|+++|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 54321 3356688999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCC
Q 048743 203 MSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREP 282 (653)
Q Consensus 203 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 282 (653)
|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.+ ..+|..+||+||.+|+++|++++|.++|++| ..+++
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g---~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-~~~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG---FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-ETKDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC---CccchHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCe
Confidence 9999999999999999999999999999999999999877 5667789999999999999999999999999 55677
Q ss_pred CCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHH--------HHHHhcCCCCCCHHHHHHHHHHH
Q 048743 283 LPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQE--------LVLFRNGKLLHSNRAMAKLINGY 354 (653)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~p~~~~~~~li~~~ 354 (653)
..|+.++..+...+...............++.|+..+....+..+.+.+ +..+...|+.|+..+|+.||++|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 7777665444443333222222222222333444444444444333221 11344455555555555555555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Q 048743 355 KKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREA 434 (653)
Q Consensus 355 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 434 (653)
++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..||+.+|.+|++.|..+.+
T Consensus 435 ~k~g~~~~A~~vf~~m~~-----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE-----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred HHcCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHh
Confidence 555555555555555543 2334455555555555555555555555543 3555555555555555555555555
Q ss_pred HHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCC
Q 048743 435 EALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKM 514 (653)
Q Consensus 435 ~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~ 514 (653)
.+++..|.+.|+.++..... .++++|+++|++++|..+|+++ .||+.+||+||.+|++.|+
T Consensus 509 ~~i~~~~~~~g~~~~~~~~n--------------aLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPN--------------ALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred HHHHHHHHHhCCCccceech--------------HHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCC
Confidence 55555555555555541111 1246788899999999999998 4899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHH
Q 048743 515 IGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVME 594 (653)
Q Consensus 515 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~ 594 (653)
.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +..++.|+..+|++++++|++.|++++|.+
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~---~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~ 646 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME---EKYSITPNLKHYACVVDLLGRAGKLTEAYN 646 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH---HHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999996 357999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHhHHHHH--HHhhhhhHHhhhhhHHHHH----------------HHHHhhHhHHHhHHhh
Q 048743 595 VIGYMKKQNMYVDKLMYKSEF--LKHHKHLYRRLKVSNARTE----------------AQSKRLVNVQAFRKWA 650 (653)
Q Consensus 595 ~~~~m~~~g~~p~~~t~~~l~--~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 650 (653)
++++|. ++||..+|++++ |+.+++++.++.+++.+++ .+.|+|++|.++++..
T Consensus 647 ~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 647 FINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred HHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 999994 899999999999 8999999999999999887 6789999999998753
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-66 Score=567.63 Aligned_cols=513 Identities=12% Similarity=0.068 Sum_probs=454.4
Q ss_pred chHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCC-CCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHH
Q 048743 17 SSREVLLRKLESASKNHQVGEAWETFNDFQRLHGI-PERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDL 95 (653)
Q Consensus 17 p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t 95 (653)
++...+..++..+++.|++++|+++|++|.+.+.. ++...++.++..|++.|. +++|+.++..|. .||..|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~---~~eAl~lf~~M~-----~pd~~T 439 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRA---VKEAFRFAKLIR-----NPTLST 439 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCC---HHHHHHHHHHcC-----CCCHHH
Confidence 45667888888999999999999999999997654 455577889999998887 799999998773 289999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCc----c
Q 048743 96 LAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGA----E 171 (653)
Q Consensus 96 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~ 171 (653)
|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|..+++.| +++.|.++|+ .
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G------------------~vd~A~~vf~eM~~~ 501 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG------------------KVDAMFEVFHEMVNA 501 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc------------------CHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999988777765 5666666665 4
Q ss_pred CCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhH
Q 048743 172 LIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQ 251 (653)
Q Consensus 172 ~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (653)
++.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.... ..+.+|..
T Consensus 502 Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~-~gi~PD~v 580 (1060)
T PLN03218 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET-HPIDPDHI 580 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc-CCCCCcHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999997632 12556778
Q ss_pred HHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHH
Q 048743 252 FYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQE 331 (653)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (653)
+|++||.+|+++|++++|.++|++|
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M------------------------------------------------------- 605 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMI------------------------------------------------------- 605 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-------------------------------------------------------
Confidence 9999999999999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048743 332 LVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGH 411 (653)
Q Consensus 332 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 411 (653)
...++.|+..+|+.+|.+|++.|++++|.++|++|.+.| ..||..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 606 ----~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 606 ----HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred ----HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 457788999999999999999999999999999999988 777888899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHH
Q 048743 412 PMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491 (653)
Q Consensus 412 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 491 (653)
.||..+|++||.+|++.|++++|.++|++|.+.|+.||... +..++.+ |++.|++++|.++|++|.
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt---yN~LI~g-----------y~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST---MNALITA-----------LCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHH-----------HHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998621 2222233 455999999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc----c-------------------C
Q 048743 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS----L-------------------E 548 (653)
Q Consensus 492 ~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~-------------------~ 548 (653)
+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+ + +
T Consensus 747 ~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~ 826 (1060)
T PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENK 826 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccc
Confidence 9999999999999999999999999999999999999999999999999876532 1 1
Q ss_pred CHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHhhhhhHHhhhh
Q 048743 549 MYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKV 628 (653)
Q Consensus 549 ~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~~~ 628 (653)
..++|..+|++|. +.|+.||..||+.+|.+++..+..+.+..++++|...+..|+..+|++++..+....++|..+
T Consensus 827 w~~~Al~lf~eM~----~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l 902 (1060)
T PLN03218 827 WTSWALMVYRETI----SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSL 902 (1060)
T ss_pred hHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHH
Confidence 2357888888885 569999999999999888899999999999999999999999999999996554344577777
Q ss_pred hHHHHH
Q 048743 629 SNARTE 634 (653)
Q Consensus 629 ~~~~~~ 634 (653)
.+.+.+
T Consensus 903 ~~em~~ 908 (1060)
T PLN03218 903 LEEAAS 908 (1060)
T ss_pred HHHHHH
Confidence 777766
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.5e-65 Score=555.10 Aligned_cols=484 Identities=14% Similarity=0.115 Sum_probs=436.7
Q ss_pred cchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHH
Q 048743 16 GSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDL 95 (653)
Q Consensus 16 ~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t 95 (653)
+|+..++..++..+++.|.+++|+++|+.|.. |+..+|+.+|.+|++.|+ +++|.++|.+|.+ .|..||..+
T Consensus 403 ~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~---~e~A~~lf~~M~~-~Gl~pD~~t 474 (1060)
T PLN03218 403 DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQD---IDGALRVLRLVQE-AGLKADCKL 474 (1060)
T ss_pred CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcC---HHHHHHHHHHHHH-cCCCCCHHH
Confidence 46677788889999999999999999999876 999999999999999998 7999999988854 567899999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCc----c
Q 048743 96 LAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGA----E 171 (653)
Q Consensus 96 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~ 171 (653)
|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|..+++.| ++++|.++|+ .
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G------------------~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG------------------QVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc------------------CHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999988888775 4555555554 6
Q ss_pred CCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHh--cCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccch
Q 048743 172 LIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQ--TGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHY 249 (653)
Q Consensus 172 ~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 249 (653)
++.||..+||.||.+|++.|++++|.++|++|.+ .|+.||..||+.++.+|++.|++++|.++|+.|.+.+ +.++
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g---i~p~ 613 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN---IKGT 613 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCC
Confidence 6799999999999999999999999999999986 6899999999999999999999999999999999876 5556
Q ss_pred hHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhh
Q 048743 250 QQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGK 329 (653)
Q Consensus 250 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (653)
..+||.||.+|++.|++++|.++|++|
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM----------------------------------------------------- 640 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDM----------------------------------------------------- 640 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHH-----------------------------------------------------
Confidence 679999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048743 330 QELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409 (653)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 409 (653)
...|+.||..+|+.+|.+|++.|++++|.++|++|.+.| ..++..+|+.||.+|++.|++++|.++|++|.+.
T Consensus 641 ------~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G-~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~ 713 (1060)
T PLN03218 641 ------KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG-IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713 (1060)
T ss_pred ------HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 567799999999999999999999999999999999988 7788889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc-hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHH
Q 048743 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQ 488 (653)
Q Consensus 410 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 488 (653)
|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||. ++..++ .. |++.|+++.|.++|+
T Consensus 714 g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL----~a-----------~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL----VA-----------SERKDDADVGLDLLS 778 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HH-----------HHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999997 333332 22 445999999999999
Q ss_pred HHHHccCCCCHHHHHHHHHHHHc----C-------------------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 048743 489 EMREEAALSTIYKLNSSIYFFCK----G-------------------KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS 545 (653)
Q Consensus 489 ~m~~~~~~p~~~~y~~li~~~~~----~-------------------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 545 (653)
+|.+.|+.||..+|+++|..|.+ . +..++|+.+|++|++.|+.||..||+.++.+++
T Consensus 779 ~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~ 858 (1060)
T PLN03218 779 QAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQ 858 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Confidence 99999999999999999976432 1 234689999999999999999999999998888
Q ss_pred ccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH
Q 048743 546 SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKL 609 (653)
Q Consensus 546 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 609 (653)
+.+..+.+..+++.| ...+..|+..+|+++|+++++. .++|..++++|.+.|+.|+..
T Consensus 859 ~~~~~~~~~~m~~~m----~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 859 LPHDATLRNRLIENL----GISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ccccHHHHHHHHHHh----ccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 888888887777666 4557889999999999998543 478999999999999999975
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-63 Score=557.73 Aligned_cols=526 Identities=13% Similarity=0.037 Sum_probs=430.4
Q ss_pred ccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhH-----------------------------------HH
Q 048743 15 EGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVV-----------------------------------NR 59 (653)
Q Consensus 15 ~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------------------------------~~ 59 (653)
..|+..+|+.+|.+|++.|++++|+++|++|.+.+..|+..+| |.
T Consensus 148 ~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 148 PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 3578889999999999999999999999999887777776665 45
Q ss_pred HHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHh
Q 048743 60 FITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMV 139 (653)
Q Consensus 60 ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 139 (653)
+|.+|++.|+ +++|.++|.+|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+++
T Consensus 228 Li~~y~k~g~---~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~ 299 (857)
T PLN03077 228 LITMYVKCGD---VVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299 (857)
T ss_pred HHHHHhcCCC---HHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Confidence 5555566666 678888888873 36889999999999999999999999999999999999999999999888
Q ss_pred hcccc-----------------cccchHHHHHHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHH
Q 048743 140 KTEIG-----------------TCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMEL 202 (653)
Q Consensus 140 ~~~~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~ 202 (653)
+.+.. +....+.++.++.+.|+++.|+++|+.+..||.++||++|.+|++.|++++|+++|++
T Consensus 300 ~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred hcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66532 3356788999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCC
Q 048743 203 MSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREP 282 (653)
Q Consensus 203 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 282 (653)
|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.+ ..++..+||+||++|+++|++++|.++|++| ..+++
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g---~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m-~~~d~ 455 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG---LISYVVVANALIEMYSKCKCIDKALEVFHNI-PEKDV 455 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC---CCcchHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCe
Confidence 9999999999999999999999999999999999999877 4566779999999999999999999999999 45566
Q ss_pred CCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHH
Q 048743 283 LPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSE 362 (653)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 362 (653)
.+|+.++..+...+.. . ....-+..|. .++.||..||+.+|.+|++.|+++.
T Consensus 456 vs~~~mi~~~~~~g~~-------~--------------------eA~~lf~~m~-~~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 456 ISWTSIIAGLRLNNRC-------F--------------------EALIFFRQML-LTLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred eeHHHHHHHHHHCCCH-------H--------------------HHHHHHHHHH-hCCCCCHhHHHHHHHHHhhhchHHH
Confidence 6666543332221111 0 0001112233 3578888888888888888888888
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048743 363 LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442 (653)
Q Consensus 363 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 442 (653)
+.+++..+.+.| ..++..++|+||++|+++|++++|.++|++| .||..+||++|.+|++.|+.++|.++|++|.
T Consensus 508 ~~~i~~~~~~~g-~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 508 GKEIHAHVLRTG-IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred hHHHHHHHHHhC-CCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888877 6667777888888888888888888888876 4788888888888888888888888888888
Q ss_pred HcCCccCc-hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHH-HccCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 048743 443 KSCLVQNL-SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR-EEAALSTIYKLNSSIYFFCKGKMIGDALK 520 (653)
Q Consensus 443 ~~~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~y~~li~~~~~~g~~~~a~~ 520 (653)
+.|+.||. ++..++. .|++.|++++|.++|++|. +.|+.|+..+|+.|+++|++.|++++|.+
T Consensus 582 ~~g~~Pd~~T~~~ll~---------------a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~ 646 (857)
T PLN03077 582 ESGVNPDEVTFISLLC---------------ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN 646 (857)
T ss_pred HcCCCCCcccHHHHHH---------------HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 88888887 3333332 2345788888888888888 67888888888888888888888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 048743 521 IYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV-SRDLYETLLLNFLQGGYFERVMEVIGYM 599 (653)
Q Consensus 521 ~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m 599 (653)
++++|. ++||..+|++|+.+|...|+.+.+....+.+. .+.| +...|..+...|+..|+|++|.++.+.|
T Consensus 647 ~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~------~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 647 FINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIF------ELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred HHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH------hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 888873 68888888888888888888888887777665 2344 4455666677888888888888888888
Q ss_pred HhCCCCCCHHh
Q 048743 600 KKQNMYVDKLM 610 (653)
Q Consensus 600 ~~~g~~p~~~t 610 (653)
+++|++++.-.
T Consensus 718 ~~~g~~k~~g~ 728 (857)
T PLN03077 718 RENGLTVDPGC 728 (857)
T ss_pred HHcCCCCCCCc
Confidence 88888877543
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.8e-63 Score=538.42 Aligned_cols=468 Identities=14% Similarity=0.118 Sum_probs=427.0
Q ss_pred CCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhH
Q 048743 52 PERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLL 131 (653)
Q Consensus 52 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 131 (653)
++..+|+.+|.++++.|+ .++|+++|..|....+..||..||+.++.+|++.++++.|.+++..|.+.|+.||..+|
T Consensus 85 ~~~~~~~~~i~~l~~~g~---~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGR---HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CCceeHHHHHHHHHcCCC---HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 455689999999999988 79999999999776667799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcc
Q 048743 132 LLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD 211 (653)
Q Consensus 132 ~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 211 (653)
+.++..+++. |+++.|+++|+.+..||.++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 162 n~Li~~y~k~------------------g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~ 223 (697)
T PLN03081 162 NRVLLMHVKC------------------GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223 (697)
T ss_pred HHHHHHHhcC------------------CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC
Confidence 9886665555 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhc
Q 048743 212 AHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQD 291 (653)
Q Consensus 212 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 291 (653)
..||+.++.+|++.|..+.+.+++..+.+.+ ..+|..+||+||++|+++|++++|.++|++|
T Consensus 224 ~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g---~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m--------------- 285 (697)
T PLN03081 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTG---VVGDTFVSCALIDMYSKCGDIEDARCVFDGM--------------- 285 (697)
T ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC---CCccceeHHHHHHHHHHCCCHHHHHHHHHhC---------------
Confidence 9999999999999999999999999998876 4456678999999999999999999999999
Q ss_pred ccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048743 292 AQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIK 371 (653)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 371 (653)
..+|..+||.+|.+|++.|++++|.++|++|.
T Consensus 286 ------------------------------------------------~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 286 ------------------------------------------------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred ------------------------------------------------CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34788999999999999999999999999999
Q ss_pred hcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc-
Q 048743 372 KEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL- 450 (653)
Q Consensus 372 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~- 450 (653)
+.| ..||..||+.++.+|++.|+++.|.+++.+|.+.|+.||..+|++||++|++.|++++|.++|++|.+ ||.
T Consensus 318 ~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 318 DSG-VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HcC-CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 988 77888899999999999999999999999999999999999999999999999999999999999964 454
Q ss_pred hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-cC
Q 048743 451 SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE-MK 529 (653)
Q Consensus 451 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-~g 529 (653)
+++.+ +. .|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|.+ .|
T Consensus 393 t~n~l----I~-----------~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 393 SWNAL----IA-----------GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred eHHHH----HH-----------HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 22222 22 3566999999999999999999999999999999999999999999999999986 69
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-H
Q 048743 530 IRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD-K 608 (653)
Q Consensus 530 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~ 608 (653)
+.|+..+|++++.+|++.|++++|.++++.| ++.|+..+|++|+.+|+.+|+++.|..+++++. ++.|+ .
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-------~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~ 528 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA-------PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKL 528 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCC
Confidence 9999999999999999999999999998655 689999999999999999999999999999997 55665 5
Q ss_pred HhHHHHH--HHhhhhhHHhhhhhHHHHHH
Q 048743 609 LMYKSEF--LKHHKHLYRRLKVSNARTEA 635 (653)
Q Consensus 609 ~t~~~l~--~~~~~~~~~~~~~~~~~~~~ 635 (653)
.+|..++ +...|+++.|.++.+.|.+.
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 6888877 66678888888888887764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-60 Score=517.87 Aligned_cols=464 Identities=13% Similarity=0.106 Sum_probs=423.0
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHhhhhc-CCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHH
Q 048743 21 VLLRKLESASKNHQVGEAWETFNDFQRLH-GIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKL 99 (653)
Q Consensus 21 ~~~~~i~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~l 99 (653)
+++..|..+.+.|++++|+++|++|.+.+ ..|+..+|+.++.+|++.++ .+.+..++..+.+ .|..||..+|+.+
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~---~~~a~~l~~~m~~-~g~~~~~~~~n~L 164 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS---IRCVKAVYWHVES-SGFEPDQYMMNRV 164 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHH-hCCCcchHHHHHH
Confidence 78999999999999999999999998765 46888999999999999988 6888899877754 5688999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCc----cCCCC
Q 048743 100 SLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGA----ELIKP 175 (653)
Q Consensus 100 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~ 175 (653)
+.+|++.|+++.|.++|++|.+ ||..+|++++..+++.| ++++|.++|+ .+..|
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g------------------~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAG------------------NYREAFALFREMWEDGSDA 222 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCc------------------CHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999964 89999999998888775 4445555554 56889
Q ss_pred chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHH
Q 048743 176 DTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYES 255 (653)
Q Consensus 176 ~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (653)
|..+|+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.. ++..+||+
T Consensus 223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~~~vt~n~ 295 (697)
T PLN03081 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-------KTTVAWNS 295 (697)
T ss_pred ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-------CChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998854 35568999
Q ss_pred HHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHH
Q 048743 256 LLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLF 335 (653)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (653)
||.+|++.|++++|.++|++|
T Consensus 296 li~~y~~~g~~~eA~~lf~~M----------------------------------------------------------- 316 (697)
T PLN03081 296 MLAGYALHGYSEEALCLYYEM----------------------------------------------------------- 316 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHH-----------------------------------------------------------
Confidence 999999999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 048743 336 RNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDS 415 (653)
Q Consensus 336 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 415 (653)
...|+.||..||+.++.+|++.|++++|.+++..|.+.| .+++..+|+.||++|+++|++++|.++|++|.+ ||.
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC-CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 567899999999999999999999999999999999998 788889999999999999999999999999975 799
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc-hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHH-c
Q 048743 416 TTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE-E 493 (653)
Q Consensus 416 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~-~ 493 (653)
.+||+||.+|++.|+.++|.++|++|.+.|+.||. ++..++. ++++.|.+++|.++|+.|.+ .
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~---------------a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS---------------ACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH---------------HHhcCCcHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999997 3333332 24569999999999999985 6
Q ss_pred cCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccC-
Q 048743 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVS- 572 (653)
Q Consensus 494 ~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~- 572 (653)
|+.|+..+|+.||++|++.|++++|.+++++| ++.||..+|++|+.+|+..|+++.|..+++.+. ++.|+
T Consensus 457 g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~------~~~p~~ 527 (697)
T PLN03081 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY------GMGPEK 527 (697)
T ss_pred CCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh------CCCCCC
Confidence 99999999999999999999999999999876 589999999999999999999999999998875 55664
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 048743 573 RDLYETLLLNFLQGGYFERVMEVIGYMKKQNMY 605 (653)
Q Consensus 573 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 605 (653)
..+|..|+..|++.|++++|.+++++|+++|++
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 679999999999999999999999999999985
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=3.1e-24 Score=246.14 Aligned_cols=551 Identities=11% Similarity=0.007 Sum_probs=358.2
Q ss_pred chHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHH
Q 048743 17 SSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLL 96 (653)
Q Consensus 17 p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~ 96 (653)
.+......+...+.+.|++++|.+.++.+... ...+...+..+...+.+.|+ .++|.+.|.+.....+. +...+
T Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~--~~~~~ 400 (899)
T TIGR02917 327 NSHQARRLLASIQLRLGRVDEAIATLSPALGL-DPDDPAALSLLGEAYLALGD---FEKAAEYLAKATELDPE--NAAAR 400 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCC--CHHHH
Confidence 34556666677778888888888888887663 22344567777777777777 67888888877654433 45566
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHh----------------hcccccccchHHHHHHHHHhh
Q 048743 97 AKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMV----------------KTEIGTCLASNFLIQLCDVFL 160 (653)
Q Consensus 97 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----------------~~~~~~~~~~~~l~~~~~~~~ 160 (653)
..+...+...|++++|++.++.+.+....+.. ....++.... ...+........+...+...|
T Consensus 401 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 479 (899)
T TIGR02917 401 TQLGISKLSQGDPSEAIADLETAAQLDPELGR-ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG 479 (899)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCcchh-hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC
Confidence 67777777888888888888877665422211 1111211111 122223334455666666777
Q ss_pred hhhhhhcCCccCC---CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHH
Q 048743 161 HLSAEKSNGAELI---KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCY 237 (653)
Q Consensus 161 ~~~~a~~~~~~~~---~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 237 (653)
+++.|.+.|++.. +.+...+..+...+...|++++|.+.|+.+.+.+ ..+..++..+...+.+.|+.+++...++.
T Consensus 480 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 480 DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888877442 3455677788888899999999999999988764 23556678888888889999999999888
Q ss_pred hhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhh
Q 048743 238 IDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPEL 317 (653)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (653)
+....+... ..+..+...|.+.|++++|..+++++.+.. |.... .+..+. ..+...|.
T Consensus 559 ~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~----~~~~l~---~~~~~~~~-------- 616 (899)
T TIGR02917 559 AAELNPQEI----EPALALAQYYLGKGQLKKALAILNEAADAA---PDSPE----AWLMLG---RAQLAAGD-------- 616 (899)
T ss_pred HHHhCccch----hHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHH----HHHHHH---HHHHHcCC--------
Confidence 876654333 357788888999999999999998884211 10000 000000 00000000
Q ss_pred hHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHH
Q 048743 318 LEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLE 397 (653)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 397 (653)
..... ..+..... ..+.+...+..+...+.+.|++++|...|+++.+.. |.+..++..+...+...|+++
T Consensus 617 --~~~A~-----~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 617 --LNKAV-----SSFKKLLA-LQPDSALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred --HHHHH-----HHHHHHHH-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHH
Confidence 00000 00000000 012244566777777777888888888888777665 666666777788888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhccccccccccc
Q 048743 398 AAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477 (653)
Q Consensus 398 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 477 (653)
+|..+++.+.+.+ +++...+..+...+.+.|++++|...|+.+.+.+ |+........ ..|...
T Consensus 687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~--------------~~~~~~ 749 (899)
T TIGR02917 687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLH--------------RALLAS 749 (899)
T ss_pred HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHH--------------HHHHHC
Confidence 8888888777654 3466677777777778888888888888777643 3331111111 123457
Q ss_pred CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048743 478 DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557 (653)
Q Consensus 478 ~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 557 (653)
|+.++|...++.+.+... .+...++.+...|...|++++|.++|+++.+.. +.+...+..+...+...|+ .+|..++
T Consensus 750 g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 888888888888776541 367778888888888888888888888887753 3466778888888888888 7788888
Q ss_pred HHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHH--HHhhhhhHHhhhhhHHHH
Q 048743 558 GDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEF--LKHHKHLYRRLKVSNART 633 (653)
Q Consensus 558 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~--~~~~~~~~~~~~~~~~~~ 633 (653)
+.+... .+-+..++..+...+...|++++|.+.++++.+.+.. +..++..+. ....|+.+.|.+..+.+.
T Consensus 827 ~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 827 EKALKL-----APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHhh-----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 776532 1224456667777788888888888888888876643 555555544 444566777766666554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.2e-23 Score=241.37 Aligned_cols=545 Identities=11% Similarity=-0.029 Sum_probs=398.9
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHH
Q 048743 20 EVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKL 99 (653)
Q Consensus 20 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~l 99 (653)
..+..+...+...|++++|.+.|+...+.. ..+...+..+...+.+.|+ .++|...+.++....+. +...+..+
T Consensus 296 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~--~~~~~~~l 369 (899)
T TIGR02917 296 PALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGR---VDEAIATLSPALGLDPD--DPAALSLL 369 (899)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCC--CHHHHHHH
Confidence 344455567788999999999999988742 2234566777788888888 78999999988765543 67788999
Q ss_pred HHHHHhcCCCchHHHHHHHHHcCccCCCch-hHHHHHHHHhhcc----------------cccccchHHHHHHHHHhhhh
Q 048743 100 SLSLARAQMPVPASMILRLMLGRENLPCSD-LLLLVFVHMVKTE----------------IGTCLASNFLIQLCDVFLHL 162 (653)
Q Consensus 100 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~ 162 (653)
...+.+.|++++|.++|+++.+. .|+.. .+..+-..+...+ +........+...+...|+.
T Consensus 370 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 447 (899)
T TIGR02917 370 GEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQF 447 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCH
Confidence 99999999999999999999875 34433 2333222222221 11222333455566667788
Q ss_pred hhhhcCCccC---CCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCChhhhHHHHHHh
Q 048743 163 SAEKSNGAEL---IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD-AHSIIILAQIHEMNCQRDELKKFKCYI 238 (653)
Q Consensus 163 ~~a~~~~~~~---~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~ 238 (653)
+.|.++++.. .+++..+|+.+...+...|++++|.+.|+++.+. .|+ ...+..+...+...|++++|.+.++.+
T Consensus 448 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 525 (899)
T TIGR02917 448 DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDDAIQRFEKV 525 (899)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888877643 3457788999999999999999999999999875 344 445777888999999999999999999
Q ss_pred hhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhh
Q 048743 239 DQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELL 318 (653)
Q Consensus 239 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (653)
....+.. ..++..+...+.+.|+.++|..+|+++.+... ... .........+...|.
T Consensus 526 ~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~-------~~~~~l~~~~~~~~~--------- 582 (899)
T TIGR02917 526 LTIDPKN----LRAILALAGLYLRTGNEEEAVAWLEKAAELNP---QEI-------EPALALAQYYLGKGQ--------- 582 (899)
T ss_pred HHhCcCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cch-------hHHHHHHHHHHHCCC---------
Confidence 8765332 34688999999999999999999999843211 000 000000000000000
Q ss_pred HHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHH
Q 048743 319 EKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEA 398 (653)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 398 (653)
. ..............+.+...|..+..++.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++
T Consensus 583 -~------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 583 -L------KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred -H------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHH
Confidence 0 000001111112234566788999999999999999999999998876 6667778899999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc-hhhHHHHhhHHHHhhhccccccccccc
Q 048743 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-SCEMVVSERFSEVADKSASFTDTSSLM 477 (653)
Q Consensus 399 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~ 477 (653)
|..+|+++.+.. +.+..++..+...+...|++++|..+++.+.+.+ |+. ....... ..|...
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~--------------~~~~~~ 716 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEG--------------DLYLRQ 716 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHH--------------HHHHHC
Confidence 999999988753 3467889999999999999999999999998764 332 1111111 123458
Q ss_pred CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048743 478 DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557 (653)
Q Consensus 478 ~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 557 (653)
|++++|...|+.+...+ |+..++..+...+.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.++|
T Consensus 717 g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 717 KDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred CCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999999999998876 655778889999999999999999999998763 456788889999999999999999999
Q ss_pred HHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH-HhHHHH--HHHhhhhhHHhhhhhHHHHH
Q 048743 558 GDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDK-LMYKSE--FLKHHKHLYRRLKVSNARTE 634 (653)
Q Consensus 558 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~l--~~~~~~~~~~~~~~~~~~~~ 634 (653)
+.+.+. .+.+...++.+...+...|+ .+|+..+++..+. .|+. .++..+ +....|+.+.|.+.++..++
T Consensus 794 ~~~~~~-----~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 794 RTVVKK-----APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHh-----CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 988732 34577889999999999999 8899999998764 3332 222222 24556888889888888887
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=1.7e-16 Score=182.91 Aligned_cols=565 Identities=12% Similarity=0.019 Sum_probs=354.2
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhh-ccCCcchhhhHHHHHHHHHhccCCchhHHHHHHH
Q 048743 21 VLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLC-YSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKL 99 (653)
Q Consensus 21 ~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~l 99 (653)
........+.+.|++++|.+.|+.+.+. ..|+...-........ ..++ .++|.+.++++.+..|. +...+..+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~-~p~~~~la~~y~~~~~~~~g~---~~~A~~~L~~ll~~~P~--~~~~~~~L 187 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNG-APPELDLAVEYWRLVAKLPAQ---RPEAINQLQRLNADYPG--NTGLRNTL 187 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccC-CCCChHHHHHHHHHHhhCCcc---HHHHHHHHHHHHHhCCC--CHHHHHHH
Confidence 3445556788999999999999998873 2233221111222222 2244 78999999999887765 56677888
Q ss_pred HHHHHhcCCCchHHHHHHHHHcCccCCC--chhH-------------HHHHHHHhhcccccc------------------
Q 048743 100 SLSLARAQMPVPASMILRLMLGRENLPC--SDLL-------------LLVFVHMVKTEIGTC------------------ 146 (653)
Q Consensus 100 i~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~-------------~~li~~~~~~~~~~~------------------ 146 (653)
...+...|+.++|+..++++.+...... ...| ...+..+...-....
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 8999999999999999999865321000 0000 000111110000000
Q ss_pred --cchHHHHHHHHHhhhhhhhhcCCccCC---CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc-cHHHH-----
Q 048743 147 --LASNFLIQLCDVFLHLSAEKSNGAELI---KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVA-DAHSI----- 215 (653)
Q Consensus 147 --~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~----- 215 (653)
.........+...|++++|...|++.+ +.+...+..|-.++.+.|++++|...|++..+..-.. +...+
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 000111233344567888888887443 3366788899999999999999999999988753211 11111
Q ss_pred -------HHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchh
Q 048743 216 -------IILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKL 288 (653)
Q Consensus 216 -------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 288 (653)
......+.+.|++++|.+.++......+.+ ...+..|-.+|...|++++|.+.|++..+.. |....
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~----~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~---p~~~~ 420 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD----SYAVLGLGDVAMARKDYAAAERYYQQALRMD---PGNTN 420 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHH
Confidence 122445678999999999999998875432 2357788899999999999999999985421 11110
Q ss_pred hhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048743 289 RQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLL 368 (653)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 368 (653)
....+...... .........+..... ......... ...+ ....+..+...+...|++++|++.|+
T Consensus 421 ----a~~~L~~l~~~-~~~~~A~~~l~~l~~-------~~~~~~~~~-~~~l--~~~~~~~~a~~~~~~g~~~eA~~~~~ 485 (1157)
T PRK11447 421 ----AVRGLANLYRQ-QSPEKALAFIASLSA-------SQRRSIDDI-ERSL--QNDRLAQQAEALENQGKWAQAAELQR 485 (1157)
T ss_pred ----HHHHHHHHHHh-cCHHHHHHHHHhCCH-------HHHHHHHHH-HHHh--hhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 00000000000 000000000000000 000000000 0000 11245567778889999999999999
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCcc
Q 048743 369 SIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQ 448 (653)
Q Consensus 369 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 448 (653)
+..+.. |.+...+..+...|.+.|++++|...+++..+.. +.+...+..+...+...+++++|+..++.+......+
T Consensus 486 ~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~ 562 (1157)
T PRK11447 486 QRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNS 562 (1157)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcCh
Confidence 999887 7777778889999999999999999999998743 2345555555556778899999999998765432222
Q ss_pred CchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 048743 449 NLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528 (653)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 528 (653)
+. ..+.......... ...+.+...|+.++|..+++. ..++...+..+...+.+.|++++|++.|++..+.
T Consensus 563 ~~-~~l~~~l~~~~~l----~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~ 632 (1157)
T PRK11447 563 NI-QELAQRLQSDQVL----ETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR 632 (1157)
T ss_pred hH-HHHHHHHhhhHHH----HHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 0000000000000 011234458999999999872 1236667788899999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC--C
Q 048743 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV-SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM--Y 605 (653)
Q Consensus 529 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~--~ 605 (653)
. +-+...+..+...+...|+.++|.+.++.+. ...| +...+..+..++...|++++|.++++++....- .
T Consensus 633 ~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 633 E-PGNADARLGLIEVDIAQGDLAAARAQLAKLP------ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh------ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 3 3357788899999999999999999998765 2333 455666778888899999999999999976532 2
Q ss_pred C---CHHhHHHHH--HHhhhhhHHhhhhhHHHH
Q 048743 606 V---DKLMYKSEF--LKHHKHLYRRLKVSNART 633 (653)
Q Consensus 606 p---~~~t~~~l~--~~~~~~~~~~~~~~~~~~ 633 (653)
| +...+..+. ....|+.++|....+...
T Consensus 706 ~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 706 PSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 112333222 344567777777666554
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=2.1e-18 Score=176.98 Aligned_cols=305 Identities=13% Similarity=0.025 Sum_probs=206.0
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCccH-HHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhcc
Q 048743 185 HACVRFGSSLKGQHIMELMSQTGVVADA-HSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKF 263 (653)
Q Consensus 185 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 263 (653)
..+...|++++|.+.|+++.+. .|+. .++..+...+...|++++|..+++.+...+.........++..+...|.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3456789999999999999986 4544 356667777777777777777777666532211111223566667777777
Q ss_pred CCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCC
Q 048743 264 DDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHS 343 (653)
Q Consensus 264 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 343 (653)
|++++|..+|+++.+ . -+++
T Consensus 121 g~~~~A~~~~~~~l~-----------------------------------------------------------~-~~~~ 140 (389)
T PRK11788 121 GLLDRAEELFLQLVD-----------------------------------------------------------E-GDFA 140 (389)
T ss_pred CCHHHHHHHHHHHHc-----------------------------------------------------------C-Ccch
Confidence 777777777776621 0 1123
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGE---STLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS 420 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 420 (653)
..+++.+...+.+.|++++|.+.++.+.+.+..++. ...|..+...+.+.|++++|...|+++.+.. +.+...+..
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 219 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASIL 219 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHH
Confidence 445666667777777777777777776655411111 1123445555666666666666666665542 223445555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHH
Q 048743 421 LLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500 (653)
Q Consensus 421 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 500 (653)
+...+.+.|++++|.++|+++.+. .|+ ....
T Consensus 220 la~~~~~~g~~~~A~~~~~~~~~~--~p~-----------------------------------------------~~~~ 250 (389)
T PRK11788 220 LGDLALAQGDYAAAIEALERVEEQ--DPE-----------------------------------------------YLSE 250 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--Chh-----------------------------------------------hHHH
Confidence 666666666666666666666542 121 1234
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHH
Q 048743 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLL 580 (653)
Q Consensus 501 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li 580 (653)
+++.++.+|...|++++|.+.++++.+. .|+...+..+...+.+.|++++|..+++.+. ...|+...++.++
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l------~~~P~~~~~~~l~ 322 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQL------RRHPSLRGFHRLL 322 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHH------HhCcCHHHHHHHH
Confidence 5788889999999999999999998875 4676777888899999999999999998776 3468888898888
Q ss_pred HHHHh---CCCHHHHHHHHHHHHhCCCCCCHH
Q 048743 581 LNFLQ---GGYFERVMEVIGYMKKQNMYVDKL 609 (653)
Q Consensus 581 ~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~ 609 (653)
..+.. .|+.+++..++++|.++++.|+..
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 87774 558899999999999888877654
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=8.5e-18 Score=172.52 Aligned_cols=316 Identities=11% Similarity=0.044 Sum_probs=233.5
Q ss_pred HHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCchhh
Q 048743 100 SLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMI 179 (653)
Q Consensus 100 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 179 (653)
...+...|++++|+..|+++.+.+ +.+..+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--------------------------------------------------p~~~~~ 71 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--------------------------------------------------PETVEL 71 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--------------------------------------------------cccHHH
Confidence 345667788999999998887642 123456
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHH
Q 048743 180 FNLVLHACVRFGSSLKGQHIMELMSQTGVVAD---AHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESL 256 (653)
Q Consensus 180 yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 256 (653)
+..+...+.+.|++++|.++++.+.+.+..++ ..++..+...+.+.|+++.|..+++.+.+... .+..+++.+
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~l 147 (389)
T PRK11788 72 HLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD----FAEGALQQL 147 (389)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc----chHHHHHHH
Confidence 77788888899999999999998887543222 24567888888999999999999988876532 234478999
Q ss_pred HHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHh
Q 048743 257 LSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFR 336 (653)
Q Consensus 257 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (653)
+..|.+.|++++|.+.++.+.+.. ..++
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~--------------------------------------------------- 175 (389)
T PRK11788 148 LEIYQQEKDWQKAIDVAERLEKLG-GDSL--------------------------------------------------- 175 (389)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhc-CCcc---------------------------------------------------
Confidence 999999999999999999983211 0000
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 048743 337 NGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST 416 (653)
Q Consensus 337 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 416 (653)
.......|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......
T Consensus 176 ---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 176 ---RVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred ---hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 00011235667778889999999999999998876 6666678889999999999999999999998764333356
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCC
Q 048743 417 TYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAAL 496 (653)
Q Consensus 417 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 496 (653)
+++.+..+|.+.|++++|...++.+.+. .|+........ +.+.+.|++++|..+++++.+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la--------------~~~~~~g~~~~A~~~l~~~l~~~-- 312 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALA--------------QLLEEQEGPEAAQALLREQLRRH-- 312 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHH--------------HHHHHhCCHHHHHHHHHHHHHhC--
Confidence 7889999999999999999999999875 45542111111 12334788888888888877653
Q ss_pred CCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCH
Q 048743 497 STIYKLNSSIYFFCK---GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMY 550 (653)
Q Consensus 497 p~~~~y~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 550 (653)
|+...++.++..+.. .|+.++++.++++|.+.++.|+.. ..|.++|-.
T Consensus 313 P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 313 PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 788888888877664 457888888888888877777665 346656543
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.82 E-value=5.1e-15 Score=170.73 Aligned_cols=519 Identities=12% Similarity=0.028 Sum_probs=306.7
Q ss_pred cccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhH-----------------HHHHHHhhccCCcchhhhH
Q 048743 14 WEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVV-----------------NRFITDLCYSAEPHWLQKA 76 (653)
Q Consensus 14 ~~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------------~~ll~~~~~~~~~~~~~~a 76 (653)
..+.++.++...+..+.+.|+.++|.+.++.+.+. .|+...+ -...+.+...|+ .++|
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~---~~eA 131 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGR---TEEA 131 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCC---HHHH
Confidence 34446677778888888888888888888888773 2333222 111224555666 6888
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHH-hhcccccccchHHHHHH
Q 048743 77 CDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHM-VKTEIGTCLASNFLIQL 155 (653)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~~~~~~~~~~~l~~~ 155 (653)
...|.+.....+..++.. ...........|+.++|++.|+++.+. .|+.......+..+ ...+. ...+...+.++
T Consensus 132 ~~~~~~~l~~~p~~~~la-~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~~~~~~LA~ll~~~g~-~~eAl~~l~~~ 207 (1157)
T PRK11447 132 LASYDKLFNGAPPELDLA-VEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNTGLRNTLALLLFSSGR-RDEGFAVLEQM 207 (1157)
T ss_pred HHHHHHHccCCCCChHHH-HHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHccCC-HHHHHHHHHHH
Confidence 888888765443222111 111111122357888888888888776 35544333333222 22111 11111111111
Q ss_pred HHH----------------------------------hh---hhhhhhcCCccC----CCCchhhHHHHHHHHHhcCChh
Q 048743 156 CDV----------------------------------FL---HLSAEKSNGAEL----IKPDTMIFNLVLHACVRFGSSL 194 (653)
Q Consensus 156 ~~~----------------------------------~~---~~~~a~~~~~~~----~~~~~~~yn~li~~~~~~g~~~ 194 (653)
... +. ..+.+...++.. ..|+.. ....-..+...|+++
T Consensus 208 ~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~ 286 (1157)
T PRK11447 208 AKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGG 286 (1157)
T ss_pred hhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHH
Confidence 000 00 000011111000 011111 112234566778888
Q ss_pred hHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchh--------H--HHHHHHHhhhcc
Q 048743 195 KGQHIMELMSQTGVVA-DAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQ--------Q--FYESLLSLHFKF 263 (653)
Q Consensus 195 ~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~--~~~~li~~~~~~ 263 (653)
+|...|++..+. .| +...+..+..++.+.|+.++|.+.++...+..+....... . ....+-..+.+.
T Consensus 287 ~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~ 364 (1157)
T PRK11447 287 KAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA 364 (1157)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence 888888888775 45 4556777888888888888888888887765432211000 0 111223456678
Q ss_pred CCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCC
Q 048743 264 DDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHS 343 (653)
Q Consensus 264 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 343 (653)
|++++|...|++..+... .+
T Consensus 365 g~~~eA~~~~~~Al~~~P------------------------------------------------------------~~ 384 (1157)
T PRK11447 365 NNLAQAERLYQQARQVDN------------------------------------------------------------TD 384 (1157)
T ss_pred CCHHHHHHHHHHHHHhCC------------------------------------------------------------CC
Confidence 888888888888743110 11
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCccc-----------------------------------------
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTL----------------------------------------- 382 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----------------------------------------- 382 (653)
...+..+-..+...|++++|++.|++..+.. |.+...
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 2233344444444445555544444444433 222222
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHH
Q 048743 383 -CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461 (653)
Q Consensus 383 -~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~ 461 (653)
+..+...+...|++++|.+.|++..+... -+...+..+...|.+.|++++|...|++..+. .|+..........+
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~- 538 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLY- 538 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH-
Confidence 33344556677888999999888877532 25566777888899999999999999988763 35432111111110
Q ss_pred HHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCH---------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 048743 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI---------YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP 532 (653)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---------~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 532 (653)
+...++.++|...++.+......++. ..+..+...+...|+.++|+++++. .+.
T Consensus 539 ------------l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~ 601 (1157)
T PRK11447 539 ------------LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPP 601 (1157)
T ss_pred ------------HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCC
Confidence 22478888998888876543222221 1223456778899999999999882 244
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhH-
Q 048743 533 TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY- 611 (653)
Q Consensus 533 ~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~- 611 (653)
+...+..+...+.+.|++++|+..++.+.+. -+.+...+..+...|...|++++|++.++...+. .|+....
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-----~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~ 674 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTR-----EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQ 674 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHH
Confidence 5566778888999999999999999988732 2336778889999999999999999999988753 4543332
Q ss_pred H--HHHHHhhhhhHHhhhhhHHHHH
Q 048743 612 K--SEFLKHHKHLYRRLKVSNARTE 634 (653)
Q Consensus 612 ~--~l~~~~~~~~~~~~~~~~~~~~ 634 (653)
. ..+....|+.++|....+.+.+
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 2 2224456788888888887766
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=9.8e-16 Score=149.80 Aligned_cols=451 Identities=12% Similarity=0.022 Sum_probs=330.6
Q ss_pred cccccccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCC
Q 048743 10 EKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKAD 89 (653)
Q Consensus 10 ~~l~~~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 89 (653)
+.+............+.+..-+.|++.+|.+.....-+. -|...--..++.+.-..++. .+....--....+..+
T Consensus 39 qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r--~d~s~a~~~~a~r~~~- 113 (966)
T KOG4626|consen 39 QQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSR--LDKSSAGSLLAIRKNP- 113 (966)
T ss_pred HHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccc--hhhhhhhhhhhhhccc-
Confidence 333333333334566677777889999999887765552 22222222333333223321 2222211111122222
Q ss_pred chhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCC
Q 048743 90 LLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNG 169 (653)
Q Consensus 90 ~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 169 (653)
.-.++|+.+...+-..|+.+.|+.+++.|.+..
T Consensus 114 -q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~---------------------------------------------- 146 (966)
T KOG4626|consen 114 -QGAEAYSNLANILKERGQLQDALALYRAAIELK---------------------------------------------- 146 (966)
T ss_pred -hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC----------------------------------------------
Confidence 378899999999999999999999999987752
Q ss_pred ccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHH-HHHHHHHhcCChhhhHHHHHHhhhcCCCcccc
Q 048743 170 AELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSII-ILAQIHEMNCQRDELKKFKCYIDQLSTPFAHH 248 (653)
Q Consensus 170 ~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 248 (653)
+..+..|-.+-.++...|+.+.|.+.|.+..+ +.|+.+... -+-......|++.+|...+...........
T Consensus 147 ----p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fA-- 218 (966)
T KOG4626|consen 147 ----PKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFA-- 218 (966)
T ss_pred ----chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCcee--
Confidence 22456777888889999999999999988886 468777644 344555567999999988877766543222
Q ss_pred hhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhh
Q 048743 249 YQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEG 328 (653)
Q Consensus 249 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (653)
.+|+.|-..+-..|++..|++.|++..+
T Consensus 219 --iawsnLg~~f~~~Gei~~aiq~y~eAvk-------------------------------------------------- 246 (966)
T KOG4626|consen 219 --IAWSNLGCVFNAQGEIWLAIQHYEEAVK-------------------------------------------------- 246 (966)
T ss_pred --eeehhcchHHhhcchHHHHHHHHHHhhc--------------------------------------------------
Confidence 3589999999999999999999988732
Q ss_pred hHHHHHHhcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048743 329 KQELVLFRNGKLLHSN-RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407 (653)
Q Consensus 329 ~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 407 (653)
+.|+- ..|-.|-..|...+.+++|...+.+..... |....+|..+...|-..|++|.|...+++..
T Consensus 247 -----------ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 247 -----------LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred -----------CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence 34443 367788888999999999999998887776 7777788889899999999999999999988
Q ss_pred HCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc---hhhHHHHhhHHHHhhhcccccccccccCCHHHH
Q 048743 408 LAGHPMD-STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL---SCEMVVSERFSEVADKSASFTDTSSLMDKSDLA 483 (653)
Q Consensus 408 ~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a 483 (653)
+. .|+ ...|+.|..++-..|++.+|++.+.+.... .|+- .+.+- ..|...|+++.|
T Consensus 314 ~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLg----------------ni~~E~~~~e~A 373 (966)
T KOG4626|consen 314 EL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLG----------------NIYREQGKIEEA 373 (966)
T ss_pred hc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHH----------------HHHHHhccchHH
Confidence 75 343 678999999999999999999999888773 3432 11111 124568899999
Q ss_pred HHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 484 ESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT-VETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 484 ~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
..+|....+-. | =...+|.|...|-..|++++|+..|++.++ +.|+ ...|+.+-..|-..|+.+.|.+.+....
T Consensus 374 ~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 374 TRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 99998777633 4 344688999999999999999999999776 6787 4679999999999999999999997765
Q ss_pred HHhhhCCCccC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHH
Q 048743 562 RNIESGVLAVS-RDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD--KLMYKSEFLK 617 (653)
Q Consensus 562 ~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~l~~~ 617 (653)
.+.|. ...++.|...|-..|++.+|++-+++..+ ++|| ..++|.+.|.
T Consensus 450 ------~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 450 ------QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred ------hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence 45564 34677888999999999999999999874 4565 4455555533
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=3.5e-14 Score=133.15 Aligned_cols=439 Identities=10% Similarity=0.027 Sum_probs=285.6
Q ss_pred HHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhcc---------C------
Q 048743 24 RKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGK---------A------ 88 (653)
Q Consensus 24 ~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~---------~------ 88 (653)
.-+.-...+|.+.++.-+|+.|...+...++..-..+++..+......-.---++.|..|...+ |
T Consensus 120 ~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~ 199 (625)
T KOG4422|consen 120 NNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLL 199 (625)
T ss_pred hHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHH
Confidence 3344566789999999999999997766666666666666555443222222233343332110 0
Q ss_pred ---CchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhh
Q 048743 89 ---DLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAE 165 (653)
Q Consensus 89 ---~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 165 (653)
..-+..||.++|.++|+-...+.|.+++++-.....+.+..+||.+|.+..-+.. -+..
T Consensus 200 ~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~------------------K~Lv 261 (625)
T KOG4422|consen 200 FETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG------------------KKLV 261 (625)
T ss_pred HhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc------------------HHHH
Confidence 1126789999999999999999999999999888889999999999875443211 0111
Q ss_pred hcCCccCCCCchhhHHHHHHHHHhcCChh----hHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhc
Q 048743 166 KSNGAELIKPDTMIFNLVLHACVRFGSSL----KGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQL 241 (653)
Q Consensus 166 ~~~~~~~~~~~~~~yn~li~~~~~~g~~~----~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (653)
-++....++||..|||+++.+.++.|+++ .|.+++.+|++-|+.|...+|..+|..+++.++..+.
T Consensus 262 ~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~---------- 331 (625)
T KOG4422|consen 262 AEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV---------- 331 (625)
T ss_pred HHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh----------
Confidence 11222457899999999999999999775 4678899999999999999988888777665554331
Q ss_pred CCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHH
Q 048743 242 STPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKD 321 (653)
Q Consensus 242 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (653)
|..++.++..+- .|.
T Consensus 332 ---------------------------as~~i~dI~N~l--------------------------tGK------------ 346 (625)
T KOG4422|consen 332 ---------------------------ASSWINDIQNSL--------------------------TGK------------ 346 (625)
T ss_pred ---------------------------hHHHHHHHHHhh--------------------------ccC------------
Confidence 112222220000 000
Q ss_pred HHHhhhhhHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---CCCCc---ccHHHHHHHHHHcC
Q 048743 322 SILKMEGKQELVLFRNGKLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHH---SFGES---TLCSDVIDALIQLG 394 (653)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~---~~~~~li~~~~~~g 394 (653)
.-.-+.| |..-|...+..|.+..+.+.|.++..-.+...+ ++++. .-|..+....|+..
T Consensus 347 --------------~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 347 --------------TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred --------------cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 0011223 334567778888888888888877666554331 22221 22778889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccc
Q 048743 395 FLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTS 474 (653)
Q Consensus 395 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 474 (653)
..+..+..|+.|.-+-+-|+..+...++.|....|.++-.-+++.++...|..-.
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r------------------------- 467 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR------------------------- 467 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh-------------------------
Confidence 9999999999998888889999999999999999999999999999988764332
Q ss_pred cccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHH
Q 048743 475 SLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK--GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552 (653)
Q Consensus 475 ~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 552 (653)
-+.-+.++..|......|+...-.-+=...++ ..-.+.....-.+|.+..+. ....+.+.-.+.+.|+.++
T Consensus 468 -----~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qk 540 (625)
T KOG4422|consen 468 -----SDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQK 540 (625)
T ss_pred -----HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHH
Confidence 22334455555555544543321122222221 11122223334455544444 4455667777889999999
Q ss_pred HHHHHHHHHHHhhhCCCccCHHHHH---HHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 048743 553 ITILWGDIKRNIESGVLAVSRDLYE---TLLLNFLQGGYFERVMEVIGYMKKQNM 604 (653)
Q Consensus 553 a~~~~~~~~~~~~~~~~~p~~~~y~---~li~~~~~~g~~~~a~~~~~~m~~~g~ 604 (653)
|.++++.+.+ +.+-.|-....| -+++.-.+....-.|..+++-|...++
T Consensus 541 A~e~l~l~~~---~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 541 AWEMLGLFLR---KHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHh---cCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 9999988863 333333333344 566677778888888888888865543
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=3.9e-12 Score=140.52 Aligned_cols=543 Identities=11% Similarity=-0.027 Sum_probs=317.8
Q ss_pred ccccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchh
Q 048743 13 SWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQ 92 (653)
Q Consensus 13 ~~~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 92 (653)
...+-+..++..+...|...|+.++|...+++..+. .|+...|..++..+ ++ ..+|...++++....|..+
T Consensus 72 ~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~---~~kA~~~ye~l~~~~P~n~- 142 (987)
T PRK09782 72 QQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PV---EVKSVTTVEELLAQQKACD- 142 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---cc---ChhHHHHHHHHHHhCCCCh-
Confidence 334445667788888888888888888888887773 44444444444333 33 4677888888877666533
Q ss_pred HHHHHHHHHH--------HHhcCCCchHHHHHHHHHcCccCCCchhHHHH-H----------------HHHhhccccccc
Q 048743 93 LDLLAKLSLS--------LARAQMPVPASMILRLMLGRENLPCSDLLLLV-F----------------VHMVKTEIGTCL 147 (653)
Q Consensus 93 ~~t~~~li~~--------~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-i----------------~~~~~~~~~~~~ 147 (653)
.++..+... |.+. +.|.+.++ .......|+..+.... . ..+.+.+.....
T Consensus 143 -~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~ 217 (987)
T PRK09782 143 -AVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAA 217 (987)
T ss_pred -hHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHH
Confidence 333333333 5554 34444443 2222233343322222 1 122222222222
Q ss_pred chHHHHHHHHH-hhhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-ccHHHHHH--------
Q 048743 148 ASNFLIQLCDV-FLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVV-ADAHSIII-------- 217 (653)
Q Consensus 148 ~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~t~~~-------- 217 (653)
....+...+.. .++ +.+..++....+-+...+..+.+.|.+.|+.++|.++++++...-.. |+..++..
T Consensus 218 ~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~ 296 (987)
T PRK09782 218 ERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSAN 296 (987)
T ss_pred HHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCc
Confidence 22233334444 234 66666666555567888889999999999999999999998754222 33333222
Q ss_pred ----------------------HHHHHHhcCChhhhHHHHHHhhhc--------CCCcc-----------------cchh
Q 048743 218 ----------------------LAQIHEMNCQRDELKKFKCYIDQL--------STPFA-----------------HHYQ 250 (653)
Q Consensus 218 ----------------------ll~~~~~~g~~~~a~~~~~~~~~~--------~~~~~-----------------~~~~ 250 (653)
++..+.+.++++.++++.+.-... ..+.. +.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 376 (987)
T PRK09782 297 PVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANL 376 (987)
T ss_pred hhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCH
Confidence 144455566666555553211000 00000 0000
Q ss_pred HHHHHHHHhhhccCCHHHHHHHHHHhccc-CCCCCCchhhhcccccchhccCCCc-----ccchhhhccchhh----hHH
Q 048743 251 QFYESLLSLHFKFDDIDAAGELILDMNRY-REPLPNPKLRQDAQKPYLISIGSPN-----LRCGLKLQIMPEL----LEK 320 (653)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~ 320 (653)
...--+--...+.|+.++|.++|+...+. ++......+. ..++...... ......+.-..+. ...
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~-----~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 451 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLM-----ARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQ 451 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHH-----HHHHHHHHhCCcccchHHHHHhccccccchhHHHH
Confidence 01111122234567788888888777441 1111111100 0000000000 0000000000000 000
Q ss_pred HHHHhhhhhHHHHHHhcCCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHH
Q 048743 321 DSILKMEGKQELVLFRNGKL-LH--SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLE 397 (653)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~-~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 397 (653)
.............. ...+. ++ +...|..+-.++.. ++.++|...+.+..... |.+ .....+...+...|+++
T Consensus 452 ~~~~~~~~~~~~~~-~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~-~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 452 SQLPGIADNCPAIV-RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDA-WQHRAVAYQAYQVEDYA 526 (987)
T ss_pred hhhhhhhhhHHHHH-HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--Cch-HHHHHHHHHHHHCCCHH
Confidence 00000000000000 11122 23 55677777777776 88999999888877665 433 22333445556899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhccccccccccc
Q 048743 398 AAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477 (653)
Q Consensus 398 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 477 (653)
+|...|+++... +|+...+..+..++.+.|++++|...++...+.. |+... ....+.... ...
T Consensus 527 eAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~--l~~~La~~l-----------~~~ 589 (987)
T PRK09782 527 TALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNA--LYWWLHAQR-----------YIP 589 (987)
T ss_pred HHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHH--HHHHHHHHH-----------HhC
Confidence 999999997654 4555666777788899999999999999998753 55421 111111111 125
Q ss_pred CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 048743 478 DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT-VETFYYLVYGHSSLEMYRDITIL 556 (653)
Q Consensus 478 ~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~ 556 (653)
|++++|...+++..+.. |+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+-.++...|+.++|+..
T Consensus 590 Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 590 GQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999998766 77888999999999999999999999998885 454 55677777899999999999999
Q ss_pred HHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH
Q 048743 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDK 608 (653)
Q Consensus 557 ~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 608 (653)
++...+. -+-+...+..+..++...|++++|+..+++..+. .|+.
T Consensus 666 l~~AL~l-----~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 666 LERAHKG-----LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 9888632 2335677888999999999999999999999844 4654
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=2.8e-12 Score=141.61 Aligned_cols=560 Identities=11% Similarity=0.000 Sum_probs=287.2
Q ss_pred HHHHHHHHHH--hccchhHHHHHHHHhhhhcCCCC-chhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHH
Q 048743 21 VLLRKLESAS--KNHQVGEAWETFNDFQRLHGIPE-RHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLA 97 (653)
Q Consensus 21 ~~~~~i~~~~--~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~ 97 (653)
++..++.++. ..|++++|...|+...+. .|+ +.++..+...+...|+ .++|...+++..+..|. |...+.
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~---~~~A~~~~~kAv~ldP~--n~~~~~ 116 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGH---DDRARLLLEDQLKRHPG--DARLER 116 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCcc--cHHHHH
Confidence 4444444443 349999999999998873 343 4578888999999998 78999999998766542 344444
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHH-hhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCC-
Q 048743 98 KLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHM-VKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKP- 175 (653)
Q Consensus 98 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 175 (653)
. +..+ +++++|..+++++.+. .|+..-...++... +.. + . -.+...+....+.+ .+...|
T Consensus 117 ~-La~i---~~~~kA~~~ye~l~~~--~P~n~~~~~~la~~~~~~--~------~--l~y~q~eqAl~AL~--lr~~~~~ 178 (987)
T PRK09782 117 S-LAAI---PVEVKSVTTVEELLAQ--QKACDAVPTLRCRSEVGQ--N------A--LRLAQLPVARAQLN--DATFAAS 178 (987)
T ss_pred H-HHHh---ccChhHHHHHHHHHHh--CCCChhHHHHHHHHhhcc--c------h--hhhhhHHHHHHHHH--HhhhCCC
Confidence 4 3333 9999999999999887 44433333222211 000 0 0 00233333344444 233334
Q ss_pred -chhhHHHH-HHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHh-cCChhhhHHHHHHhhhcCCCcccchhHH
Q 048743 176 -DTMIFNLV-LHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEM-NCQRDELKKFKCYIDQLSTPFAHHYQQF 252 (653)
Q Consensus 176 -~~~~yn~l-i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (653)
+..+.... .+.|.+.|+++.|++++.++.+.+... ..-...+-.+|.. .++ +++..+++. ....+..+
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~-------~lk~d~~l 249 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ-------GIFTDPQS 249 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch-------hcccCHHH
Confidence 45544444 899999999999999999999986432 2224556567776 366 666666432 22245667
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCc---ccchhhhccchhhhHHH--------
Q 048743 253 YESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPN---LRCGLKLQIMPELLEKD-------- 321 (653)
Q Consensus 253 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------- 321 (653)
+..+...|.+.|+.++|.++++++..-..-.|.+.. +--...-.+.. ..........++....-
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~-----~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS-----WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLL 324 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH-----HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998432211121110 00000000000 00000000000000000
Q ss_pred --------HHHhhh-hhHHHHHHhcCCCC-------------------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048743 322 --------SILKME-GKQELVLFRNGKLL-------------------H-SNRAMAKLINGYKKHGKNSELSWLLLSIKK 372 (653)
Q Consensus 322 --------~~~~~~-~~~~~~~~~~~~~~-------------------p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 372 (653)
..+..+ ........+..... | +.....-+--...+.|+.++|.++|+..-.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~ 404 (987)
T PRK09782 325 KEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYP 404 (987)
T ss_pred hccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcC
Confidence 000000 00000111111110 1 222222333334578889999999988766
Q ss_pred -cCCCCCCcccHHHHHHHHHHcCC---HHHHHHH------------HHHH----------HH-CC-CCC--CHHHHHHHH
Q 048743 373 -EHHSFGESTLCSDVIDALIQLGF---LEAAHDI------------LDDM----------EL-AG-HPM--DSTTYKSLL 422 (653)
Q Consensus 373 -~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~------------~~~m----------~~-~g-~~p--~~~~~~~li 422 (653)
.+..-.+...-.-++..|.+.+. ..++..+ .... .. .+ .++ +...|..+-
T Consensus 405 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG 484 (987)
T PRK09782 405 FQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLA 484 (987)
T ss_pred CCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHH
Confidence 22112233334466666666655 3333222 1111 00 01 123 455555555
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHH---------Hhhhccc----------ccccccccCCHHHH
Q 048743 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE---------VADKSAS----------FTDTSSLMDKSDLA 483 (653)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~---------~~~~~~~----------~~~~~~~~~~~~~a 483 (653)
.++.. +++++|...+.+.... .|+....+.....+.. .+++... ....+...|+.+.|
T Consensus 485 ~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA 561 (987)
T PRK09782 485 KCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAAR 561 (987)
T ss_pred HHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHH
Confidence 55554 5666666655555442 2443211111100000 0000000 00112335666666
Q ss_pred HHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 048743 484 ESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562 (653)
Q Consensus 484 ~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~ 562 (653)
...++...+.+ | +...+..+...+.+.|++++|+..+++..+. .|+...|..+..++.+.|++++|...++...
T Consensus 562 ~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL- 636 (987)
T PRK09782 562 DRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL- 636 (987)
T ss_pred HHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 66666655543 3 2222222223333446666666666666543 3455566666666666666666666666654
Q ss_pred HhhhCCCcc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhH--HH-HHHHhhhhhHHhhhhhHHHHH
Q 048743 563 NIESGVLAV-SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY--KS-EFLKHHKHLYRRLKVSNARTE 634 (653)
Q Consensus 563 ~~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~-l~~~~~~~~~~~~~~~~~~~~ 634 (653)
...| +...++.+...+...|++++|++.+++..+. .|+.... +. .+....|+.+.|...++..++
T Consensus 637 -----~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 637 -----ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred -----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2233 3444555555666666777776666666543 3332211 11 114445666666666666665
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=5.7e-14 Score=151.44 Aligned_cols=358 Identities=10% Similarity=-0.014 Sum_probs=240.1
Q ss_pred HHhccchhHHHHHHHHhhhhcCC--CCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 048743 29 ASKNHQVGEAWETFNDFQRLHGI--PERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARA 106 (653)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~ 106 (653)
+.++.+|+...-.|....+..-. .+..-.-.++..+.+.|+ ..+|..++..+....+. +...+..++.+....
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~ 89 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDE---TDVGLTLLSDRVLTAKN--GRDLLRRWVISPLAS 89 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCC---cchhHHHhHHHHHhCCC--chhHHHHHhhhHhhc
Confidence 45778888888888877663211 122234556666777777 68999999888777665 455566666777789
Q ss_pred CCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCchhhHHHHHHH
Q 048743 107 QMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHA 186 (653)
Q Consensus 107 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~ 186 (653)
|+++.|++.|+++.+. .| .+...+..+...
T Consensus 90 g~~~~A~~~l~~~l~~--~P------------------------------------------------~~~~a~~~la~~ 119 (656)
T PRK15174 90 SQPDAVLQVVNKLLAV--NV------------------------------------------------CQPEDVLLVASV 119 (656)
T ss_pred CCHHHHHHHHHHHHHh--CC------------------------------------------------CChHHHHHHHHH
Confidence 9999999999998764 22 233445666777
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCccH-HHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCC
Q 048743 187 CVRFGSSLKGQHIMELMSQTGVVADA-HSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDD 265 (653)
Q Consensus 187 ~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 265 (653)
+.+.|++++|.+.|+...+. .|+. ..+..+...+...|+.++|...++.+....+.... .+..+ ..+...|+
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~----a~~~~-~~l~~~g~ 192 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD----MIATC-LSFLNKSR 192 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH----HHHHH-HHHHHcCC
Confidence 88899999999999998864 5554 44667788888888988888888877554332211 23233 23677899
Q ss_pred HHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHH
Q 048743 266 IDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNR 345 (653)
Q Consensus 266 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 345 (653)
+++|...++.+.+. ...++..
T Consensus 193 ~~eA~~~~~~~l~~-----------------------------------------------------------~~~~~~~ 213 (656)
T PRK15174 193 LPEDHDLARALLPF-----------------------------------------------------------FALERQE 213 (656)
T ss_pred HHHHHHHHHHHHhc-----------------------------------------------------------CCCcchh
Confidence 99999988887321 0112223
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEA----AHDILDDMELAGHPMDSTTYKSL 421 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~l 421 (653)
.+..+..++.+.|++++|...+++..... |.+...+..+...+...|++++ |...|++..+.. +.+...+..+
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~l 290 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLY 290 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 44455677888999999999999988776 6777778888888999998885 788888887753 3356788888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCH-H
Q 048743 422 LTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI-Y 500 (653)
Q Consensus 422 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~ 500 (653)
...+.+.|++++|...+++..+. .|+........ . ..|...|++++|...|+.+.+.+ |+. .
T Consensus 291 g~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~L---a----------~~l~~~G~~~eA~~~l~~al~~~--P~~~~ 353 (656)
T PRK15174 291 ADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMY---A----------RALRQVGQYTAASDEFVQLAREK--GVTSK 353 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH---H----------HHHHHCCCHHHHHHHHHHHHHhC--ccchH
Confidence 88899999999999998888763 45531111000 0 11223556666666665555433 322 2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 048743 501 KLNSSIYFFCKGKMIGDALKIYRRMQE 527 (653)
Q Consensus 501 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 527 (653)
.+..+..++...|+.++|.+.|++..+
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222234455556666666666666554
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=1.7e-13 Score=148.29 Aligned_cols=417 Identities=9% Similarity=-0.045 Sum_probs=219.9
Q ss_pred HHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHH
Q 048743 22 LLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSL 101 (653)
Q Consensus 22 ~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~ 101 (653)
+...-..+.+.|+++.|+..|+...+. .|++..|..+-.++.+.|+ .++|++.+.+..+..|. +...|..+..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~---~~~Ai~~~~~al~l~p~--~~~a~~~~a~ 202 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGD---WEKVVEDTTAALELDPD--YSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCC---HHHHHHHHHHHHHcCCC--CHHHHHHHHH
Confidence 445566788899999999999998873 5677788888888888888 79999999998776543 6778888999
Q ss_pred HHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHh------------hcccccccchHHHHHHHHHhhhhhhhhcCC
Q 048743 102 SLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMV------------KTEIGTCLASNFLIQLCDVFLHLSAEKSNG 169 (653)
Q Consensus 102 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 169 (653)
+|...|++++|+.-|......+-..+ .....++.... +...........+...+.. ........-+
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 280 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRN-EQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQS-FRPKPRPAGL 280 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-ccCCcchhhh
Confidence 99999999999988876654321111 11111111100 0000000000001000000 0000000000
Q ss_pred ccCC--CCch-hhHHHHHHH---HHhcCChhhHHHHHHHHHhcC-CCccH-HHHHHHHHHHHhcCChhhhHHHHHHhhhc
Q 048743 170 AELI--KPDT-MIFNLVLHA---CVRFGSSLKGQHIMELMSQTG-VVADA-HSIIILAQIHEMNCQRDELKKFKCYIDQL 241 (653)
Q Consensus 170 ~~~~--~~~~-~~yn~li~~---~~~~g~~~~a~~l~~~m~~~g-~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (653)
+... .+.. ..+..+-.. ....+++++|.+.|+...+.+ ..|+. ..+..+...+...|++++|...++.....
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0000 0000 001111000 012345666666666666543 23332 23445555555566666666666655544
Q ss_pred CCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHH
Q 048743 242 STPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKD 321 (653)
Q Consensus 242 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (653)
.+.. ...|..+...+...|++++|...|++..+
T Consensus 361 ~P~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~------------------------------------------- 393 (615)
T TIGR00990 361 DPRV----TQSYIKRASMNLELGDPDKAEEDFDKALK------------------------------------------- 393 (615)
T ss_pred CCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------
Confidence 3211 12355555555566666666666665521
Q ss_pred HHHhhhhhHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHH
Q 048743 322 SILKMEGKQELVLFRNGKLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAH 400 (653)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 400 (653)
..| +...|..+...+...|++++|...|++..... |.+...+..+...+.+.|++++|.
T Consensus 394 ------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 394 ------------------LNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred ------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 112 23345555555666666666666666665554 445555555556666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCH
Q 048743 401 DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS 480 (653)
Q Consensus 401 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 480 (653)
..|++..+. .+-+...|+.+..++...|++++|...|+...+. .|+.....
T Consensus 454 ~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~-------------------------- 504 (615)
T TIGR00990 454 ATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMY-------------------------- 504 (615)
T ss_pred HHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCcccccc--------------------------
Confidence 666665543 2224455555666666666666666666665542 22210000
Q ss_pred HHHHHHHHHHHHccCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 048743 481 DLAESLIQEMREEAALSTI-YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT-VETFYYLVYGHSSLEMYRDITILWG 558 (653)
Q Consensus 481 ~~a~~~~~~m~~~~~~p~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~ 558 (653)
++. ..++.....+...|++++|.+++++..... |+ ...+..+...+...|++++|..+|+
T Consensus 505 ----------------~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 505 ----------------MNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred ----------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 000 011222222333567777777777665542 33 3456666677777777777777776
Q ss_pred HHH
Q 048743 559 DIK 561 (653)
Q Consensus 559 ~~~ 561 (653)
...
T Consensus 567 ~A~ 569 (615)
T TIGR00990 567 RAA 569 (615)
T ss_pred HHH
Confidence 654
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.71 E-value=7.2e-13 Score=146.15 Aligned_cols=423 Identities=11% Similarity=-0.041 Sum_probs=253.1
Q ss_pred hHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHH
Q 048743 18 SREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLA 97 (653)
Q Consensus 18 ~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~ 97 (653)
++....-.+..+...|+.++|++++...... ...+...+..+-..+...|+ .++|..++.+.....|. +...+.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~---~~~A~~~~~~al~~~P~--~~~a~~ 87 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQ---WQNSLTLWQKALSLEPQ--NDDYQR 87 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC--CHHHHH
Confidence 4455566677778999999999998887651 12223357777777777777 78899999887766554 455566
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCch
Q 048743 98 KLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDT 177 (653)
Q Consensus 98 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 177 (653)
.+...+...|++++|+..+++..+. . +.+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~--~------------------------------------------------P~~~ 117 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSG--A------------------------------------------------PDKA 117 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--C------------------------------------------------CCCH
Confidence 7888888999999999999887654 1 2233
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcCChhhhHHHHHHhhhcCCCcc--cchhHHHH
Q 048743 178 MIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS-IIILAQIHEMNCQRDELKKFKCYIDQLSTPFA--HHYQQFYE 254 (653)
Q Consensus 178 ~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~ 254 (653)
. +..+..++...|++++|+..+++..+. .|+... +..+..++...|..+.|.+.++.+... |.. ........
T Consensus 118 ~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~--p~~~~~l~~~~~~ 192 (765)
T PRK10049 118 N-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLT--PAEKRDLEADAAA 192 (765)
T ss_pred H-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC--HHHHHHHHHHHHH
Confidence 3 666777788889999999999988875 555544 445666777788888888887766541 111 00000112
Q ss_pred HHHHhh-----hccCCH---HHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhh
Q 048743 255 SLLSLH-----FKFDDI---DAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKM 326 (653)
Q Consensus 255 ~li~~~-----~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (653)
.++..+ ...+++ ++|+..++.+.+.....|
T Consensus 193 ~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p------------------------------------------ 230 (765)
T PRK10049 193 ELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNP------------------------------------------ 230 (765)
T ss_pred HHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCC------------------------------------------
Confidence 222222 222334 677777877732111000
Q ss_pred hhhHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 048743 327 EGKQELVLFRNGKLLHSNR-AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405 (653)
Q Consensus 327 ~~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 405 (653)
...|... .....+.++...|++++|+..|+.+.+.+...|+. .-..+..+|...|++++|...|++
T Consensus 231 ------------~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 231 ------------DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred ------------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 0111111 11122445567799999999999999876221221 123357789999999999999999
Q ss_pred HHHCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHH
Q 048743 406 MELAGHPM---DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL 482 (653)
Q Consensus 406 m~~~g~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 482 (653)
+.+..... ....+..+..++...|++++|..+++.+.+. .|........ .
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~~--------------------~----- 350 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYGS--------------------P----- 350 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecCC--------------------C-----
Confidence 87643211 1345667777899999999999999999874 2321000000 0
Q ss_pred HHHHHHHHHHccCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 048743 483 AESLIQEMREEAALST---IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD 559 (653)
Q Consensus 483 a~~~~~~m~~~~~~p~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 559 (653)
.-.|+ ...+..+...+...|+.++|+++++++.... +-+...+..+...+...|++++|++.++.
T Consensus 351 -----------~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 351 -----------TSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred -----------CCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 00122 1123334444455555555555555554431 22334444555555555555555555554
Q ss_pred HHHHhhhCCCccC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 048743 560 IKRNIESGVLAVS-RDLYETLLLNFLQGGYFERVMEVIGYMKK 601 (653)
Q Consensus 560 ~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 601 (653)
.. ...|+ ...+-.....+.+.|++++|+.+++++.+
T Consensus 419 al------~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 419 AE------VLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HH------hhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 43 22232 33334444455555555555555555553
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=3.1e-12 Score=138.36 Aligned_cols=457 Identities=12% Similarity=0.027 Sum_probs=256.4
Q ss_pred ccccccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCc--hhHHHHHHHhhccCCcchhhhHHHHHHHHHhccC
Q 048743 11 KLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPER--HVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKA 88 (653)
Q Consensus 11 ~l~~~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~ 88 (653)
.+.+..|+..-... -...+.|+++.|+..|++..+. .|.. ..+ .++..+...|+ .++|+..+++.. .+
T Consensus 28 ~~~p~~~~~~y~~a--ii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~---~~~A~~~~eka~--~p 97 (822)
T PRK14574 28 VVNPAMADTQYDSL--IIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGR---DQEVIDVYERYQ--SS 97 (822)
T ss_pred ccCccchhHHHHHH--HHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCC---cHHHHHHHHHhc--cC
Confidence 34444555333333 3457999999999999998873 4443 244 77777777777 689999998875 22
Q ss_pred CchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcC
Q 048743 89 DLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSN 168 (653)
Q Consensus 89 ~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 168 (653)
.......+..+...|...|++++|+++|+++.+. .|+....... +...+...++.++|.+.
T Consensus 98 ~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~g-----------------La~~y~~~~q~~eAl~~ 158 (822)
T PRK14574 98 MNISSRGLASAARAYRNEKRWDQALALWQSSLKK--DPTNPDLISG-----------------MIMTQADAGRGGVVLKQ 158 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHH-----------------HHHHHhhcCCHHHHHHH
Confidence 2223344444466888889999999999999876 3333211110 11122222233333333
Q ss_pred CccCC--CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcCChhhhHHHHHHhhhcCCCc
Q 048743 169 GAELI--KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS-IIILAQIHEMNCQRDELKKFKCYIDQLSTPF 245 (653)
Q Consensus 169 ~~~~~--~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 245 (653)
+++.. .|+...|-.++..+...++..+|++.++++.+. .|+... +..+..+..+.|-...|.++.......-.+.
T Consensus 159 l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~ 236 (822)
T PRK14574 159 ATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAE 236 (822)
T ss_pred HHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHH
Confidence 33222 223223322222222233333355555555544 243322 3344444444554444444433311110000
Q ss_pred ccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHh
Q 048743 246 AHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILK 325 (653)
Q Consensus 246 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (653)
. +.-| +.+.|-+..+--. .+ ... ..+ .......
T Consensus 237 -----~-~~~l--------~~~~~a~~vr~a~-----~~--------------------~~~------~~~--r~~~~d~ 269 (822)
T PRK14574 237 -----H-YRQL--------ERDAAAEQVRMAV-----LP--------------------TRS------ETE--RFDIADK 269 (822)
T ss_pred -----H-HHHH--------HHHHHHHHHhhcc-----cc--------------------ccc------chh--hHHHHHH
Confidence 0 0000 0011111110000 00 000 000 0000001
Q ss_pred hhhhHHHHHHhcCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHH
Q 048743 326 MEGKQELVLFRNGKLLHSNR----AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHD 401 (653)
Q Consensus 326 ~~~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 401 (653)
......-+.-.-...++... ...--+-++...|++.++++.|+.+...+...|+ .+-..+.++|...+++++|..
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~-y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD-YARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH-HHHHHHHHHHHhcCCcHHHHH
Confidence 11111110011112222222 2235566778899999999999999998843344 458899999999999999999
Q ss_pred HHHHHHHCC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----------ccCchhhHHHHhhHHHHhh
Q 048743 402 ILDDMELAG-----HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCL-----------VQNLSCEMVVSERFSEVAD 465 (653)
Q Consensus 402 ~~~~m~~~g-----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~~~~~~~~~~~l~~~~~ 465 (653)
+|+.+.... .+++......|.-+|...+++++|..+++.+.+..- .|+..+.-......
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a----- 423 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV----- 423 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH-----
Confidence 999996643 233455567899999999999999999999987311 12221111111011
Q ss_pred hcccccccccccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 048743 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT-VETFYYLVYG 543 (653)
Q Consensus 466 ~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~ 543 (653)
..+.-.|++.+|++.++++.... | |......+.+.+...|.+.+|++.++..... .|+ ..+......+
T Consensus 424 ------~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~ 493 (822)
T PRK14574 424 ------QSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAET 493 (822)
T ss_pred ------HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHH
Confidence 11234788888888888887654 6 8888888888888888888888888665543 444 4556677777
Q ss_pred HhccCCHHHHHHHHHHHH
Q 048743 544 HSSLEMYRDITILWGDIK 561 (653)
Q Consensus 544 ~~~~~~~~~a~~~~~~~~ 561 (653)
....+++++|..+.+.+.
T Consensus 494 al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 494 AMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHhhhhHHHHHHHHHHHH
Confidence 788888888888887775
No 21
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.70 E-value=2.9e-14 Score=139.69 Aligned_cols=362 Identities=13% Similarity=0.006 Sum_probs=212.1
Q ss_pred CchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHH
Q 048743 53 ERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLL 132 (653)
Q Consensus 53 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 132 (653)
-..+|+.+-+.+-..|+ +++|++++..+.+..+. ..+.|..+..++...|+.+.|...|.+..+. .|+.....
T Consensus 115 ~ae~ysn~aN~~kerg~---~~~al~~y~~aiel~p~--fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~ 187 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQ---LQDALALYRAAIELKPK--FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCAR 187 (966)
T ss_pred HHHHHHHHHHHHHHhch---HHHHHHHHHHHHhcCch--hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhh
Confidence 34688888888877777 78999999888766543 6788889999999999999999998887664 45544433
Q ss_pred HHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccC--CCCc-hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 048743 133 LVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAEL--IKPD-TMIFNLVLHACVRFGSSLKGQHIMELMSQTGVV 209 (653)
Q Consensus 133 ~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~-~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~ 209 (653)
+-+..+.+. .|++++|..-+-+- ..|. .+.|+.|-..+-..|+...|++-|++..+. .
T Consensus 188 s~lgnLlka-----------------~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--d 248 (966)
T KOG4626|consen 188 SDLGNLLKA-----------------EGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--D 248 (966)
T ss_pred cchhHHHHh-----------------hcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--C
Confidence 322222211 11222222211111 1222 245666666666666666666666666542 4
Q ss_pred ccHH-HHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchh
Q 048743 210 ADAH-SIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKL 288 (653)
Q Consensus 210 p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 288 (653)
|+-. .|-.|-..|...+.++.|...+......++.. ..++..|-..|-..|++|-|+..+++...
T Consensus 249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~----A~a~gNla~iYyeqG~ldlAI~~Ykral~---------- 314 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH----AVAHGNLACIYYEQGLLDLAIDTYKRALE---------- 314 (966)
T ss_pred CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc----hhhccceEEEEeccccHHHHHHHHHHHHh----------
Confidence 4432 25555666666666666666655554443211 12355555555566666666666655521
Q ss_pred hhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHH
Q 048743 289 RQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSN-RAMAKLINGYKKHGKNSELSWLL 367 (653)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~ 367 (653)
+.|+- ..|+.|-.++-..|++.+|.+.+
T Consensus 315 ---------------------------------------------------~~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 315 ---------------------------------------------------LQPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred ---------------------------------------------------cCCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 22322 24566666666666666666666
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 048743 368 LSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMD-STTYKSLLTAYYKVKMFREAEALLKQMRKSCL 446 (653)
Q Consensus 368 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 446 (653)
.+...-. +......+.|-..|...|.++.|..+|....+- .|. ....+.|...|-..|+.++|..-+++..+ +
T Consensus 344 nkaL~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I 417 (966)
T KOG4626|consen 344 NKALRLC--PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--I 417 (966)
T ss_pred HHHHHhC--CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--c
Confidence 6555544 444444555666666666666666666555442 222 33455555566666666666666555544 3
Q ss_pred ccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 048743 447 VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526 (653)
Q Consensus 447 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 526 (653)
.|+. ...|+.+-..|-..|+++.|++.+.+.+
T Consensus 418 ~P~f------------------------------------------------Ada~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 418 KPTF------------------------------------------------ADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred CchH------------------------------------------------HHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 4432 2345666666677777777777777666
Q ss_pred hcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 527 EMKIRPT-VETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 527 ~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
.. .|. ...++.|...|-.+|++.+|+.-+++..
T Consensus 450 ~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 450 QI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred hc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 53 444 3456677777777777777777776665
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.70 E-value=4.1e-13 Score=144.89 Aligned_cols=327 Identities=10% Similarity=-0.034 Sum_probs=216.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhh
Q 048743 182 LVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHF 261 (653)
Q Consensus 182 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 261 (653)
.++..+.+.|+++.|..+++........+.. .+..++.+....|+.+.|.+.++.+....+.... .+..+...+.
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~----a~~~la~~l~ 121 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE----DVLLVASVLL 121 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHH
Confidence 4567777888888888888887766433222 2334445555688888888888888776443322 4677777788
Q ss_pred ccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCC
Q 048743 262 KFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLL 341 (653)
Q Consensus 262 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (653)
..|++++|...+++..+ +.
T Consensus 122 ~~g~~~~Ai~~l~~Al~-------------------------------------------------------------l~ 140 (656)
T PRK15174 122 KSKQYATVADLAEQAWL-------------------------------------------------------------AF 140 (656)
T ss_pred HcCCHHHHHHHHHHHHH-------------------------------------------------------------hC
Confidence 88888888888887732 23
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048743 342 HS-NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS 420 (653)
Q Consensus 342 p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 420 (653)
|+ ...+..+...+...|++++|...++.+.... |.+...+..+ ..+.+.|++++|...++.+.+....++...+..
T Consensus 141 P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~ 217 (656)
T PRK15174 141 SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGL 217 (656)
T ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 33 3456677777888888888888888776655 4444434333 346777888888888888766543344455555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHH----HHHHHHHHHHccCC
Q 048743 421 LLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL----AESLIQEMREEAAL 496 (653)
Q Consensus 421 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----a~~~~~~m~~~~~~ 496 (653)
+..++...|++++|...|+...+. .|+....... +. ..|...|+.++ |...|++..+..
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~---Lg----------~~l~~~G~~~eA~~~A~~~~~~Al~l~-- 280 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRS---LG----------LAYYQSGRSREAKLQAAEHWRHALQFN-- 280 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHH---HH----------HHHHHcCCchhhHHHHHHHHHHHHhhC--
Confidence 566777888888888888887764 3543111110 00 11334667664 777787777654
Q ss_pred C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHH
Q 048743 497 S-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT-VETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD 574 (653)
Q Consensus 497 p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~ 574 (653)
| +...+..+...+...|++++|+..+++..+. .|+ ...+..+..++...|++++|...++.+.+ ..|+..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~------~~P~~~ 352 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAR------EKGVTS 352 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCccch
Confidence 5 6667788888888888888888888887764 343 44566677778888888888888877652 234433
Q ss_pred H-HHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 048743 575 L-YETLLLNFLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 575 ~-y~~li~~~~~~g~~~~a~~~~~~m~~~ 602 (653)
. +..+..++...|+.++|.+.|++..+.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3 333456677888888888888877644
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.70 E-value=1.7e-12 Score=143.21 Aligned_cols=419 Identities=9% Similarity=-0.003 Sum_probs=280.1
Q ss_pred CchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHH
Q 048743 53 ERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLL 132 (653)
Q Consensus 53 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 132 (653)
++....-.+......|+ .++|++++.+.....+ .+...+..+..++.+.|++++|.+++++..+. .
T Consensus 14 ~~~~~~d~~~ia~~~g~---~~~A~~~~~~~~~~~~--~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~------- 79 (765)
T PRK10049 14 SNNQIADWLQIALWAGQ---DAEVITVYNRYRVHMQ--LPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--E------- 79 (765)
T ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C-------
Confidence 44455666677777888 6888888888754222 35667888999999999999999999887653 1
Q ss_pred HHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccH
Q 048743 133 LVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA 212 (653)
Q Consensus 133 ~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 212 (653)
+.+...+..+...+...|++++|...+++..+. .|+.
T Consensus 80 -----------------------------------------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~ 116 (765)
T PRK10049 80 -----------------------------------------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDK 116 (765)
T ss_pred -----------------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 223444556778889999999999999999876 4544
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcc
Q 048743 213 HSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDA 292 (653)
Q Consensus 213 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 292 (653)
..+..+..++...|+.++|...++.+.+..+... .++..+..++...|..++|...++.... .|...
T Consensus 117 ~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~----~~~~~la~~l~~~~~~e~Al~~l~~~~~----~p~~~----- 183 (765)
T PRK10049 117 ANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQ----QYPTEYVQALRNNRLSAPALGAIDDANL----TPAEK----- 183 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCChHHHHHHHHhCCC----CHHHH-----
Confidence 3377788888999999999999999988754332 2456677888889999999999987721 00000
Q ss_pred cccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHH-----HhcCCh---HHHH
Q 048743 293 QKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGY-----KKHGKN---SELS 364 (653)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~-----~~~~~~---~~a~ 364 (653)
... .......++... ...+++ ++|+
T Consensus 184 ---------------------------------------------~~l--~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 184 ---------------------------------------------RDL--EADAAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred ---------------------------------------------HHH--HHHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence 000 000111122222 122334 7788
Q ss_pred HHHHHHHhcCCCCCCcc-cHH----HHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHHHHHH
Q 048743 365 WLLLSIKKEHHSFGEST-LCS----DVIDALIQLGFLEAAHDILDDMELAGHP-MDSTTYKSLLTAYYKVKMFREAEALL 438 (653)
Q Consensus 365 ~~~~~m~~~~~~~~~~~-~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~ 438 (653)
+.++.+.+.....|+.. .+. ..+.++...|++++|...|+.+.+.+.+ |+- .-..+..+|...|++++|+..|
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHH
Confidence 88888886521122211 111 1134556779999999999999887632 332 2222577899999999999999
Q ss_pred HHHHHcCCccCc-hh-hHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHcCCCH
Q 048743 439 KQMRKSCLVQNL-SC-EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST-IYKLNSSIYFFCKGKMI 515 (653)
Q Consensus 439 ~~m~~~~~~p~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~y~~li~~~~~~g~~ 515 (653)
+.+.+.. |.. .. ......+... +...|+.++|...++.+.+.. |. ...+.
T Consensus 296 ~~~l~~~--p~~~~~~~~~~~~L~~a-----------~~~~g~~~eA~~~l~~~~~~~--P~~~~~~~------------ 348 (765)
T PRK10049 296 TELFYHP--ETIADLSDEELADLFYS-----------LLESENYPGALTVTAHTINNS--PPFLRLYG------------ 348 (765)
T ss_pred HHHhhcC--CCCCCCChHHHHHHHHH-----------HHhcccHHHHHHHHHHHhhcC--CceEeecC------------
Confidence 9987642 322 00 0111111111 223788888888888887653 32 11111
Q ss_pred HHHHHHHHHHHhcCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHH
Q 048743 516 GDALKIYRRMQEMKIRPTV---ETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERV 592 (653)
Q Consensus 516 ~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a 592 (653)
...-.|+. ..+..+...+...|+.++|+.+++++... .+.+...+..+...+...|++++|
T Consensus 349 -----------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-----~P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 349 -----------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-----APGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred -----------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCCHHHH
Confidence 00114553 34556777888999999999999988632 344667888899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHH---HHhhhhhHHhhhhhHHHHH
Q 048743 593 MEVIGYMKKQNMYVDKLMYKSEF---LKHHKHLYRRLKVSNARTE 634 (653)
Q Consensus 593 ~~~~~~m~~~g~~p~~~t~~~l~---~~~~~~~~~~~~~~~~~~~ 634 (653)
++.+++..+ +.||...+.... ....+++++++.+.+.+++
T Consensus 413 ~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 413 ENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999885 457754433322 4455789999999999988
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=5e-13 Score=125.55 Aligned_cols=394 Identities=12% Similarity=0.080 Sum_probs=253.5
Q ss_pred ccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHH
Q 048743 15 EGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLD 94 (653)
Q Consensus 15 ~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 94 (653)
.+.+.+++..+|.++|+-...+.|.+++.+.....+..+..+||.+|.+-+.+.. -+++.+|... ...||..
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-------K~Lv~EMisq-km~Pnl~ 274 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-------KKLVAEMISQ-KMTPNLF 274 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-------HHHHHHHHHh-hcCCchH
Confidence 3457789999999999999999999999999998899999999999998776644 5677777554 3679999
Q ss_pred HHHHHHHHHHhcCCCch----HHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCc
Q 048743 95 LLAKLSLSLARAQMPVP----ASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGA 170 (653)
Q Consensus 95 t~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 170 (653)
|+|++++..++.|+++. |++++.+|++.|+.|+..+|..+|.-.++.+.....+...+.+.... + .-+-|.
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~---l--tGK~fk 349 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS---L--TGKTFK 349 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh---h--ccCccc
Confidence 99999999999998754 67899999999999999999999987776654433333333333221 1 111122
Q ss_pred cCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcC----CCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcc
Q 048743 171 ELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTG----VVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFA 246 (653)
Q Consensus 171 ~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 246 (653)
-.-+.|...|-.-+..|.+..|.+-|.++..-..... +.|+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~----------------------------------- 394 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPD----------------------------------- 394 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChH-----------------------------------
Confidence 2223344556666777777777777776655444211 1111
Q ss_pred cchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhh
Q 048743 247 HHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKM 326 (653)
Q Consensus 247 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (653)
.....-|..+..+.|....++.-...++.|.
T Consensus 395 ~~~~fYyr~~~~licq~es~~~~~~~Y~~lV------------------------------------------------- 425 (625)
T KOG4422|consen 395 QHRNFYYRKFFDLICQMESIDVTLKWYEDLV------------------------------------------------- 425 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------------------------------------
Confidence 1111236667777788888888888888882
Q ss_pred hhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 048743 327 EGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406 (653)
Q Consensus 327 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 406 (653)
..-+-|+..+...++.+..-.|.++-.-+++.++...| ++++..+. ++++..|
T Consensus 426 ----------P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g------ht~r~~l~-----------eeil~~L 478 (625)
T KOG4422|consen 426 ----------PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG------HTFRSDLR-----------EEILMLL 478 (625)
T ss_pred ----------cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh------hhhhHHHH-----------HHHHHHH
Confidence 23345777788888999999999999999999988777 22333332 4455555
Q ss_pred HHCCCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHH
Q 048743 407 ELAGHPMDSTTYKSLLTAYYK--VKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE 484 (653)
Q Consensus 407 ~~~g~~p~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~ 484 (653)
.+....|+...-.-+=.+..+ ..-.+..+..-.+|++..+.|.....+.+ - +.+.|..++|.
T Consensus 479 ~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~-----L-----------l~R~G~~qkA~ 542 (625)
T KOG4422|consen 479 ARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAI-----L-----------LLRAGRTQKAW 542 (625)
T ss_pred hcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHH-----H-----------HHHcchHHHHH
Confidence 555545543322222222222 12223333344556665555543111111 1 12478888888
Q ss_pred HHHHHHHHccC-CCCHHHHH---HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 048743 485 SLIQEMREEAA-LSTIYKLN---SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548 (653)
Q Consensus 485 ~~~~~m~~~~~-~p~~~~y~---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 548 (653)
++|.-+.+.+. .|-....| -+++.-.+.++..+|..+++-|...+..--...-+.++..|.-..
T Consensus 543 e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNq 610 (625)
T KOG4422|consen 543 EMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQ 610 (625)
T ss_pred HHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCH
Confidence 88888854433 34333445 445555677788888888888876554333333344444444443
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.69 E-value=1.4e-12 Score=141.15 Aligned_cols=234 Identities=10% Similarity=-0.038 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (653)
...|+.+...+...|++++|+..|++..... |.....|..+...+...|++++|...|++..+.. +-+..+|..+..
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~ 407 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQ 407 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3467788888889999999999999998876 6666678889999999999999999999998763 346788999999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHHH
Q 048743 424 AYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKL 502 (653)
Q Consensus 424 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y 502 (653)
.+...|++++|...|++..+ +.|+......... ..+.+.|+.++|...|++..+.. | +...|
T Consensus 408 ~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la-------------~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~ 470 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLG-------------VTQYKEGSIASSMATFRRCKKNF--PEAPDVY 470 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHH-------------HHHHHCCCHHHHHHHHHHHHHhC--CCChHHH
Confidence 99999999999999999987 4566522221111 12345899999999999988653 5 67789
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc-CHHH
Q 048743 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVE------TFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV-SRDL 575 (653)
Q Consensus 503 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p-~~~~ 575 (653)
+.+...+...|++++|++.|++..+.....+.. .++.....+...|++++|.++++.... +.| +...
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~------l~p~~~~a 544 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI------IDPECDIA 544 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh------cCCCcHHH
Confidence 999999999999999999999988743221111 112222233446999999999988752 334 4456
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 048743 576 YETLLLNFLQGGYFERVMEVIGYMKKQN 603 (653)
Q Consensus 576 y~~li~~~~~~g~~~~a~~~~~~m~~~g 603 (653)
+..+...+.+.|++++|.+.|++..+..
T Consensus 545 ~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 545 VATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 8889999999999999999999987553
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.60 E-value=1e-10 Score=126.77 Aligned_cols=422 Identities=9% Similarity=-0.029 Sum_probs=287.1
Q ss_pred HHHHHhcCCCchHHHHHHHHHcCccCCCch--hHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCch
Q 048743 100 SLSLARAQMPVPASMILRLMLGRENLPCSD--LLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDT 177 (653)
Q Consensus 100 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 177 (653)
+....+.|+++.|++.|++..+. .|+.. .+ .+ +..+...|+.++|+..+++-..|+.
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dl------------------l~l~~~~G~~~~A~~~~eka~~p~n 99 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DW------------------LQIAGWAGRDQEVIDVYERYQSSMN 99 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HH------------------HHHHHHcCCcHHHHHHHHHhccCCC
Confidence 44678999999999999999876 45532 22 22 2333334577777777777666655
Q ss_pred hhHHHH---HHHHHhcCChhhHHHHHHHHHhcCCCccH-HHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHH
Q 048743 178 MIFNLV---LHACVRFGSSLKGQHIMELMSQTGVVADA-HSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFY 253 (653)
Q Consensus 178 ~~yn~l---i~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (653)
..|..+ ...|...|++++|.++|+++.+. .|+. ..+..++..+...++.++|.+.++.+.+.... ...+
T Consensus 100 ~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-----~~~~ 172 (822)
T PRK14574 100 ISSRGLASAARAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT-----VQNY 172 (822)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-----hHHH
Confidence 444433 44677789999999999999986 4544 44567788889999999999999998776432 2234
Q ss_pred HHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHH
Q 048743 254 ESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELV 333 (653)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (653)
-.++..+...++..+|++.++++.+
T Consensus 173 l~layL~~~~~~~~~AL~~~ekll~------------------------------------------------------- 197 (822)
T PRK14574 173 MTLSYLNRATDRNYDALQASSEAVR------------------------------------------------------- 197 (822)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHH-------------------------------------------------------
Confidence 4444444446666669999999832
Q ss_pred HHhcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccH--HHHHHHHHH---------cCC---HHH
Q 048743 334 LFRNGKLLHS-NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC--SDVIDALIQ---------LGF---LEA 398 (653)
Q Consensus 334 ~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~~li~~~~~---------~g~---~~~ 398 (653)
..|+ ...+..+..+..+.|-...|.++..+-..- +.+...-+ ...+.-.++ .++ .+.
T Consensus 198 ------~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 198 ------LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL--VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred ------hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 3464 556788899999999999999887763311 11111000 000111111 122 345
Q ss_pred HHHHHHHHHHC-CCCCCH-HHH----HHHHHHHHHcCChHHHHHHHHHHHHcCCc-cCchhhHHHHhhHHHHhhhccccc
Q 048743 399 AHDILDDMELA-GHPMDS-TTY----KSLLTAYYKVKMFREAEALLKQMRKSCLV-QNLSCEMVVSERFSEVADKSASFT 471 (653)
Q Consensus 399 a~~~~~~m~~~-g~~p~~-~~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~~~~~l~~~~~~~~~~~ 471 (653)
|+.-++.+... +-.|.. .-| -=.+-++.+.|++.++.+.|+.|...+.. |+- .... +.
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y-~~~a--------------~a 334 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY-ARRW--------------AA 334 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH-HHHH--------------HH
Confidence 56666665542 222322 222 23455788999999999999999987754 431 1111 12
Q ss_pred ccccccCCHHHHHHHHHHHHHcc-----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------CC--C
Q 048743 472 DTSSLMDKSDLAESLIQEMREEA-----ALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI-----------RP--T 533 (653)
Q Consensus 472 ~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-----------~p--~ 533 (653)
|+|...+++++|+.+++.+.... ..++......|..+|...+++++|..+++.+.+.-. .| |
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 45667999999999999987543 122444467899999999999999999999987311 12 3
Q ss_pred HH-HHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 048743 534 VE-TFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612 (653)
Q Consensus 534 ~~-t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 612 (653)
-. .+..++..+...|++.+|++.++++.. .-+-|......+.+.+...|++.+|++.++.... +.|+.....
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~-----~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~ 487 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSS-----TAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILE 487 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHH
Confidence 22 344567778999999999999999863 2455888889999999999999999999987774 467754444
Q ss_pred HHH---HHhhhhhHHhhhhhHHHHH
Q 048743 613 SEF---LKHHKHLYRRLKVSNARTE 634 (653)
Q Consensus 613 ~l~---~~~~~~~~~~~~~~~~~~~ 634 (653)
... ....+++.++.++.+.+.+
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 333 3344788899888888877
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.59 E-value=2.3e-10 Score=118.87 Aligned_cols=252 Identities=11% Similarity=0.056 Sum_probs=182.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 048743 352 NGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMF 431 (653)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 431 (653)
...-..++++.|.+.|..+.+.. |.-+..|--+.......+...+|...+....+. ..-++..++.+-..+.+..++
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhh
Confidence 33445679999999999999887 554444555553344457888899999888764 334566666666688888889
Q ss_pred HHHHHHHHHHHHcCC-ccCchhhHHH-HhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHH
Q 048743 432 REAEALLKQMRKSCL-VQNLSCEMVV-SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKLNSSIYF 508 (653)
Q Consensus 432 ~~a~~~~~~m~~~~~-~p~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~ 508 (653)
..|..-|....+.-. .+|.+..+.+ ..++..+....+. .-...+..++|.++|.+..... | |.+.=|.+--.
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn---~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiV 655 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN---PEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIV 655 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC---hHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhh
Confidence 889887777766422 2454333322 3333333221111 1223556788999999988865 5 88888888889
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCC
Q 048743 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588 (653)
Q Consensus 509 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~ 588 (653)
++..|++.+|.++|...++... -+..+|..+.++|...|++..|+++|+...+ ...-.-+..+.+.|.+++-+.|.
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk---kf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK---KFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH---HhcccCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999998754 2445688899999999999999999998763 34556688899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048743 589 FERVMEVIGYMKKQNMYVDKLMYKSEF 615 (653)
Q Consensus 589 ~~~a~~~~~~m~~~g~~p~~~t~~~l~ 615 (653)
+.+|.+.+.........-..+-||..+
T Consensus 732 ~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 999999988777555444455666655
No 28
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.46 E-value=6.6e-10 Score=114.16 Aligned_cols=232 Identities=9% Similarity=-0.034 Sum_probs=142.1
Q ss_pred ccccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchh
Q 048743 13 SWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQ 92 (653)
Q Consensus 13 ~~~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 92 (653)
....|++.||.++|..||..|+.+.|- +|..|.-.....+...++.++.+...+++ .+. +..|.
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And---~En------------pkep~ 82 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAND---AEN------------PKEPL 82 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccccc---ccC------------CCCCc
Confidence 356788999999999999999999999 99988875455566789999998877776 222 33689
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHH-HH-------cCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhh
Q 048743 93 LDLLAKLSLSLARAQMPVPASMILRL-ML-------GRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSA 164 (653)
Q Consensus 93 ~~t~~~li~~~~~~g~~~~a~~~~~~-m~-------~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 164 (653)
++||+.|+.+|..+|+... ++..++ |. ..|+.-...-+-..++.+-.. .+.+.|.... ....|.++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~---lpda~n~ill-lv~eglwaq 157 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHS---LPDAENAILL-LVLEGLWAQ 157 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCccc---chhHHHHHHH-HHHHHHHHH
Confidence 9999999999999999865 322222 22 223322222222111211111 1122222211 111233444
Q ss_pred hhcCCccCCCCchhhHHH---HHHHHHhcCChhhHHHHHHHHHhcCC-CccHHHHHHHHHHHHhcCChhhhHHHHHHhhh
Q 048743 165 EKSNGAELIKPDTMIFNL---VLHACVRFGSSLKGQHIMELMSQTGV-VADAHSIIILAQIHEMNCQRDELKKFKCYIDQ 240 (653)
Q Consensus 165 a~~~~~~~~~~~~~~yn~---li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (653)
+.++....+ ...-++. +++-+... ..-..++.+.. +.+. .|++.+|..++++-..+|+.+.|..++..|..
T Consensus 158 llkll~~~P--vsa~~~p~~vfLrqnv~~--ntpvekLl~~c-ksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 158 LLKLLAKVP--VSAWNAPFQVFLRQNVVD--NTPVEKLLNMC-KSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHhhCC--cccccchHHHHHHHhccC--CchHHHHHHHH-HHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 444443222 1111111 23333332 23334444433 3333 59999999999999999999999999999999
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHh
Q 048743 241 LSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDM 276 (653)
Q Consensus 241 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 276 (653)
.+-|...++ |-.|+-+ .++...+..++.-|
T Consensus 233 ~gfpir~Hy---FwpLl~g---~~~~q~~e~vlrgm 262 (1088)
T KOG4318|consen 233 KGFPIRAHY---FWPLLLG---INAAQVFEFVLRGM 262 (1088)
T ss_pred cCCCccccc---chhhhhc---CccchHHHHHHHHH
Confidence 887666553 4455444 67777777777777
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.44 E-value=2.1e-08 Score=104.64 Aligned_cols=528 Identities=11% Similarity=0.001 Sum_probs=304.4
Q ss_pred cccccchHHHHHHHHHHHHhcc---chhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccC
Q 048743 12 LSWEGSSREVLLRKLESASKNH---QVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKA 88 (653)
Q Consensus 12 l~~~~p~~~~~~~~i~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~ 88 (653)
+.+++.+..++..+-..-.... .+..++.++...-. -...+|.+.+.|-+.+...|+ .+.++.+...+.+..-
T Consensus 226 lqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~-~n~~nP~~l~~LAn~fyfK~d---y~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 226 LQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYK-ENNENPVALNHLANHFYFKKD---YERVWHLAEHAIKNTE 301 (1018)
T ss_pred HhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh-hcCCCcHHHHHHHHHHhhccc---HHHHHHHHHHHHHhhh
Confidence 3444445555544433333333 34455555554433 123466777888888777777 6788888877654332
Q ss_pred Cc-hhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhc
Q 048743 89 DL-LQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKS 167 (653)
Q Consensus 89 ~~-~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 167 (653)
.. .-...|-.+..+|-..|++++|...|.+-... .|+.+++..+ -+.+++-..|.++.+..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~----------------GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLV----------------GLGQMYIKRGDLEESKF 363 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcccccc----------------chhHHHHHhchHHHHHH
Confidence 22 24566777888888888888888888665543 5666665544 35677777777777777
Q ss_pred CCccCC---CCchhhHHHHHHHHHhcC----ChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhh-
Q 048743 168 NGAELI---KPDTMIFNLVLHACVRFG----SSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYID- 239 (653)
Q Consensus 168 ~~~~~~---~~~~~~yn~li~~~~~~g----~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~- 239 (653)
.|++.. +-+..+--+|-..|+..+ ..+.|..++....+.- .-|...|..+...+.. ++.-....++....
T Consensus 364 ~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d 441 (1018)
T KOG2002|consen 364 CFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALD 441 (1018)
T ss_pred HHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 777443 233345555555555554 3345555555444432 2244445555555543 33333344433332
Q ss_pred ---hcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchh
Q 048743 240 ---QLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPE 316 (653)
Q Consensus 240 ---~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (653)
....+ ++ ..+.|.+-..+...|.++.|...|++....-....+... +-...-...+..+...+
T Consensus 442 ~L~~~~~~-ip--~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de--~~~~~lt~~YNlarl~E--------- 507 (1018)
T KOG2002|consen 442 ILESKGKQ-IP--PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE--GKSTNLTLKYNLARLLE--------- 507 (1018)
T ss_pred HHHHcCCC-CC--HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc--cccchhHHHHHHHHHHH---------
Confidence 22222 22 235788888888888888888888877544111111110 00000000000000000
Q ss_pred hhHHHHHHhhhhhHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCC
Q 048743 317 LLEKDSILKMEGKQELVLFRNGKLLHSNR-AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF 395 (653)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 395 (653)
.+..+......--.--...|+-+ .|-.+....-..+...+|...+.+....+ ..++..++.+-..+.+...
T Consensus 508 ------~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 508 ------ELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred ------hhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHhhhh
Confidence 00000000000000011234443 33333333334577889999999988877 5666667888878888888
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH------------cCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHH
Q 048743 396 LEAAHDILDDMELAG-HPMDSTTYKSLLTAYYK------------VKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462 (653)
Q Consensus 396 ~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~ 462 (653)
+..|.+-|....+.- ..+|..+.-+|-+.|.. .+..++|+++|....+. .|...+..-...++
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiV-- 655 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIV-- 655 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhh--
Confidence 888888776664432 22566655555554432 23467888888887763 34431111111111
Q ss_pred HhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHH
Q 048743 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE-MKIRPTVETFYYLV 541 (653)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li 541 (653)
++..|+++.|..+|....+... -...+|-.+..+|...|++..|+++|+.-.. ..-.-+......|.
T Consensus 656 -----------LA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 656 -----------LAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred -----------hhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 2348999999999999998654 1334678899999999999999999998766 44455677888999
Q ss_pred HHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHhCC
Q 048743 542 YGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLN------------------FLQGGYFERVMEVIGYMKKQN 603 (653)
Q Consensus 542 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~------------------~~~~g~~~~a~~~~~~m~~~g 603 (653)
+++.+.|.+.+|.+..-..... ...-....||..+.. ....+..+.|.++|.+|...+
T Consensus 724 ra~y~~~~~~eak~~ll~a~~~----~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKARHL----APSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHHHh----CCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999998887655421 111123345543321 112334678999999998776
Q ss_pred CC
Q 048743 604 MY 605 (653)
Q Consensus 604 ~~ 605 (653)
-+
T Consensus 800 d~ 801 (1018)
T KOG2002|consen 800 DK 801 (1018)
T ss_pred CC
Confidence 44
No 30
>PF13041 PPR_2: PPR repeat family
Probab=99.42 E-value=4.4e-13 Score=90.99 Aligned_cols=50 Identities=26% Similarity=0.499 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 048743 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546 (653)
Q Consensus 497 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 546 (653)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 31
>PF13041 PPR_2: PPR repeat family
Probab=99.42 E-value=3.7e-13 Score=91.33 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=48.4
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 048743 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEM 224 (653)
Q Consensus 175 ~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 224 (653)
||+++||++|++|++.|++++|+++|++|++.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=4e-09 Score=100.36 Aligned_cols=494 Identities=10% Similarity=0.055 Sum_probs=268.0
Q ss_pred hHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHH-HHHHHhhccCCcchhhhHHHHHHHHHhccCCc---hhH
Q 048743 18 SREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVN-RFITDLCYSAEPHWLQKACDLVLKIQKGKADL---LQL 93 (653)
Q Consensus 18 ~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ 93 (653)
+..++..+..-|.......+|+..|+-+.+..-+|+..... .+-+.+.+.+. +.+|++.+.-...+-|.. ...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~---fskaikfyrmaldqvpsink~~ri 276 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKRE---FSKAIKFYRMALDQVPSINKDMRI 276 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhh---HHHHHHHHHHHHhhccccchhhHH
Confidence 44566677777888888999999999988888888876442 23333444444 678888874333332211 234
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCC
Q 048743 94 DLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELI 173 (653)
Q Consensus 94 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 173 (653)
...+.+-..|.+.|+++.|+.-|+...+. .|+-.+--.++-....-|. .......+.++...-+.++.-.-+- ..-
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d-~ekmkeaf~kli~ip~~~dddkyi~-~~d 352 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGD-AEKMKEAFQKLIDIPGEIDDDKYIK-EKD 352 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCc-HHHHHHHHHHHhcCCCCCCcccccC-CcC
Confidence 45666667788999999999999888765 6776654333322221111 0011112222222222222211111 122
Q ss_pred CCchhhHHHHH-----HHHHhcC--ChhhHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcCChhhhHHHHHHhhhcCCCc
Q 048743 174 KPDTMIFNLVL-----HACVRFG--SSLKGQHIMELMSQTGVVADAHS-IIILAQIHEMNCQRDELKKFKCYIDQLSTPF 245 (653)
Q Consensus 174 ~~~~~~yn~li-----~~~~~~g--~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 245 (653)
.|+....|--| +..-+.+ +-+++.-.--.+..--+.||-.. |.-.+.........+-|..+
T Consensus 353 dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl----------- 421 (840)
T KOG2003|consen 353 DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL----------- 421 (840)
T ss_pred CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh-----------
Confidence 34444333333 2222222 12222222222222223444332 22222221111111111111
Q ss_pred ccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHh
Q 048743 246 AHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILK 325 (653)
Q Consensus 246 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (653)
. .|. ..-|.+.||++.|.++++-+.++.+-.
T Consensus 422 -e-----i~k-a~~~lk~~d~~~aieilkv~~~kdnk~------------------------------------------ 452 (840)
T KOG2003|consen 422 -E-----INK-AGELLKNGDIEGAIEILKVFEKKDNKT------------------------------------------ 452 (840)
T ss_pred -h-----hhH-HHHHHhccCHHHHHHHHHHHHhccchh------------------------------------------
Confidence 0 111 223567899999999888873322111
Q ss_pred hhhhHHHHHHhcCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHH
Q 048743 326 MEGKQELVLFRNGKLLHSNRAMAKLINGYKK-HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404 (653)
Q Consensus 326 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 404 (653)
.+...-|...--|.+ -.++..|.+.-+...... ..+....+.--......|++++|.+.++
T Consensus 453 ----------------~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 453 ----------------ASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred ----------------hHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 111111111122222 234555555554443322 1111111111222334678888888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHH
Q 048743 405 DMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE 484 (653)
Q Consensus 405 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~ 484 (653)
+.....-.-....||+=+ .+-+.|+.++|++.|-.+.. +..+..-.++-.+-+ |-...+..+|.
T Consensus 515 eal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~--il~nn~evl~qiani-------------ye~led~aqai 578 (840)
T KOG2003|consen 515 EALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANI-------------YELLEDPAQAI 578 (840)
T ss_pred HHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHH-------------HHHhhCHHHHH
Confidence 776652222223333322 34566778888877766643 222221111111112 22244666777
Q ss_pred HHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 048743 485 SLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563 (653)
Q Consensus 485 ~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~ 563 (653)
+++..... +.| |..+..-|.+.|-+.|+-.+|.+.+-+-.+. ++-|..|...|..-|....-++.++.+|+...
T Consensus 579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa-- 653 (840)
T KOG2003|consen 579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA-- 653 (840)
T ss_pred HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--
Confidence 66654433 445 7788889999999999999999887654433 56678888888888888888999999998763
Q ss_pred hhhCCCccCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHhhhhhH
Q 048743 564 IESGVLAVSRDLYETLLLNF-LQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLY 623 (653)
Q Consensus 564 ~~~~~~~p~~~~y~~li~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~ 623 (653)
-+.|+..-|..||..| .|.|++.+|.++++....+ + |....+.-++.+..+|+.
T Consensus 654 ----liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-f-pedldclkflvri~~dlg 708 (840)
T KOG2003|consen 654 ----LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-F-PEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred ----hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-C-ccchHHHHHHHHHhcccc
Confidence 5889999999888765 4689999999999998633 4 555555556666666653
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.35 E-value=2.3e-09 Score=109.17 Aligned_cols=220 Identities=10% Similarity=-0.046 Sum_probs=127.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH
Q 048743 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDS-------TTYKSLLT 423 (653)
Q Consensus 351 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~ 423 (653)
...+...|+++.|...++++.+.. |.+..++..+...|.+.|+++.|.+++..+.+.+..++. .+|..++.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 445666677777777777766666 666666666777777777777777777777665544222 12222233
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCccCc-hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHH
Q 048743 424 AYYKVKMFREAEALLKQMRKSCLVQNL-SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502 (653)
Q Consensus 424 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y 502 (653)
......+.+...++++.+.+. .|+. ....... ..+...|+.++|..++++..+.. |+..
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A--------------~~l~~~g~~~~A~~~L~~~l~~~--~~~~-- 297 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMA--------------EHLIECDDHDTAQQIILDGLKRQ--YDER-- 297 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHH--------------HHHHHCCCHHHHHHHHHHHHhcC--CCHH--
Confidence 223333334444444443221 1211 1111110 11234667777777776666532 3332
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHH
Q 048743 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPT-VETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLL 581 (653)
Q Consensus 503 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~ 581 (653)
-.++.+....++.+++++..+...+. .|+ ...+..+-+.|.+.+++++|.+.|+... ...|+...|..+..
T Consensus 298 l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al------~~~P~~~~~~~La~ 369 (398)
T PRK10747 298 LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL------KQRPDAYDYAWLAD 369 (398)
T ss_pred HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH------hcCCCHHHHHHHHH
Confidence 12344445567777777777777754 344 3446677777778888888888877665 45677777777777
Q ss_pred HHHhCCCHHHHHHHHHHHH
Q 048743 582 NFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 582 ~~~~~g~~~~a~~~~~~m~ 600 (653)
.+.+.|+.++|.+++++-.
T Consensus 370 ~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 7788888888877777553
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.6e-07 Score=90.18 Aligned_cols=299 Identities=13% Similarity=0.019 Sum_probs=216.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhc
Q 048743 183 VLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFK 262 (653)
Q Consensus 183 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 262 (653)
+..++......+++.+=.......|+.-+...-+....+.-...|++.|+.+|+.+.+. +|.--.|..+|..++-.--.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcchhHHHHhHHHHHHhh
Confidence 34566667788888888888888886655555455555566778888888888888887 45444455566666543322
Q ss_pred cCCHH-HHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCC
Q 048743 263 FDDID-AAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLL 341 (653)
Q Consensus 263 ~g~~~-~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (653)
+.++. -|..++ .-.+..
T Consensus 312 ~skLs~LA~~v~--------------------------------------------------------------~idKyR 329 (559)
T KOG1155|consen 312 KSKLSYLAQNVS--------------------------------------------------------------NIDKYR 329 (559)
T ss_pred hHHHHHHHHHHH--------------------------------------------------------------HhccCC
Confidence 21111 111111 112233
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048743 342 HSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSL 421 (653)
Q Consensus 342 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 421 (653)
|. |...+-+-|+-.++.++|...|+...+-+ |.....|+.+-.-|....+...|.+-++...+- .+.|-..|-.|
T Consensus 330 ~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGL 404 (559)
T KOG1155|consen 330 PE--TCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGL 404 (559)
T ss_pred cc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhh
Confidence 32 44566667778889999999999999888 777777999999999999999999999998885 34588889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHH
Q 048743 422 LTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYK 501 (653)
Q Consensus 422 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 501 (653)
-.+|.-.+.+.=|+-.|++..+ +.|+ |...
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~--~kPn------------------------------------------------DsRl 434 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALE--LKPN------------------------------------------------DSRL 434 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHh--cCCC------------------------------------------------chHH
Confidence 9999999999999988888876 4564 7788
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHH--HHHH
Q 048743 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--YETL 579 (653)
Q Consensus 502 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~--y~~l 579 (653)
|.+|-.+|.+.++.++|++.|+.....|-. +...|..|.+.|-+.++.++|..++..-.+.....|...+... --.|
T Consensus 435 w~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fL 513 (559)
T KOG1155|consen 435 WVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFL 513 (559)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 999999999999999999999998886533 6678999999999999999999999877654433343333222 2224
Q ss_pred HHHHHhCCCHHHHHHHHHHHH
Q 048743 580 LLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 580 i~~~~~~g~~~~a~~~~~~m~ 600 (653)
..-+.+.+++++|........
T Consensus 514 A~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 514 AEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHhhcchHHHHHHHHHHh
Confidence 455778888888877655544
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.32 E-value=2e-09 Score=109.54 Aligned_cols=280 Identities=11% Similarity=0.051 Sum_probs=186.7
Q ss_pred hhhhhhhcCCccCCCC--c-hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHH--HHHHHHHhcCChhhhHHH
Q 048743 160 LHLSAEKSNGAELIKP--D-TMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSII--ILAQIHEMNCQRDELKKF 234 (653)
Q Consensus 160 ~~~~~a~~~~~~~~~~--~-~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~~ 234 (653)
|+++.|++........ + ...|-....+..+.|+++.|.+.|.++.+. .|+...+. .....+...|+.+.|.+.
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4666666665544332 2 233433345558899999999999999874 66765433 446788899999999999
Q ss_pred HHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccc
Q 048743 235 KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIM 314 (653)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (653)
++.+.+..+.. ..++..+...|.+.|++++|.+++..+.+....
T Consensus 176 l~~~~~~~P~~----~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~-------------------------------- 219 (398)
T PRK10747 176 VDKLLEVAPRH----PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG-------------------------------- 219 (398)
T ss_pred HHHHHhcCCCC----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC--------------------------------
Confidence 99998765333 236889999999999999999999999431111
Q ss_pred hhhhHHHHHHhhhhhHHHHHHhcCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 048743 315 PELLEKDSILKMEGKQELVLFRNGKLLHSN------RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVID 388 (653)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 388 (653)
.|.. .+|..++.......+.+...++++.+.+.- +.++.....+..
T Consensus 220 --------------------------~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~--~~~~~~~~~~A~ 271 (398)
T PRK10747 220 --------------------------DEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT--RHQVALQVAMAE 271 (398)
T ss_pred --------------------------CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH--hCCHHHHHHHHH
Confidence 1110 133344444445555666667777665544 556666777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcc
Q 048743 389 ALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSA 468 (653)
Q Consensus 389 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~ 468 (653)
++...|+.++|.+++++..+. +||.. -.++.+....++++++++..+...+. .|+
T Consensus 272 ~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~--~P~------------------- 326 (398)
T PRK10747 272 HLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGD------------------- 326 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh--CCC-------------------
Confidence 888888888888888777763 34442 12233444557777777777777653 344
Q ss_pred cccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 048743 469 SFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548 (653)
Q Consensus 469 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 548 (653)
|...+..+-..|.+.|++++|.+.|+...+. .|+..+|..+...+.+.|
T Consensus 327 -----------------------------~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g 375 (398)
T PRK10747 327 -----------------------------TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLH 375 (398)
T ss_pred -----------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcC
Confidence 3444556666677777777777777777653 577777777777777777
Q ss_pred CHHHHHHHHHHHH
Q 048743 549 MYRDITILWGDIK 561 (653)
Q Consensus 549 ~~~~a~~~~~~~~ 561 (653)
+.++|.+++++-.
T Consensus 376 ~~~~A~~~~~~~l 388 (398)
T PRK10747 376 KPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHH
Confidence 7777777776543
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=3.7e-09 Score=108.81 Aligned_cols=338 Identities=11% Similarity=0.023 Sum_probs=201.7
Q ss_pred cCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchh
Q 048743 171 ELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQ 250 (653)
Q Consensus 171 ~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (653)
.|+.||.+||..+|.-||..|+.+.|- +|.-|+-+.+.-+...|+.++.+....++.+.++ .+-.
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------------ep~a 83 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------------EPLA 83 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------------CCch
Confidence 567788888888888888888888887 8888877776667777888888877777766555 1222
Q ss_pred HHHHHHHHhhhccCCHHHHHHHHHH-hcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhh
Q 048743 251 QFYESLLSLHFKFDDIDAAGELILD-MNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGK 329 (653)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (653)
.+|+.|..+|...||+.. .+..++ |..- ...++.........+
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i-----------------------------------~~sfs~~Gvgs~e~~ 127 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESI-----------------------------------NQSFSDHGVGSPERW 127 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHHHHHHH-----------------------------------HhhhhhhccCcHHHH
Confidence 368888888888888765 222222 2100 000000000000000
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 048743 330 QELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG-FLEAAHDILDDMEL 408 (653)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 408 (653)
.-+..--..+..||.. .++.-..-.|.++.+++++..+.......| . -.+++-+.... .+++-..+-....+
T Consensus 128 fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~p--~--~vfLrqnv~~ntpvekLl~~cksl~e 200 (1088)
T KOG4318|consen 128 FLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAP--F--QVFLRQNVVDNTPVEKLLNMCKSLVE 200 (1088)
T ss_pred HHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccch--H--HHHHHHhccCCchHHHHHHHHHHhhc
Confidence 0000011334455554 445556667888888888887765441111 1 11344443322 23343444333333
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc-hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHH
Q 048743 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLI 487 (653)
Q Consensus 409 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~ 487 (653)
.|+..+|.+++++-..+|+.+.|..++.+|.+.|+..+. ++.-++. ..++...++.++
T Consensus 201 ---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~------------------g~~~~q~~e~vl 259 (1088)
T KOG4318|consen 201 ---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLL------------------GINAAQVFEFVL 259 (1088)
T ss_pred ---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhh------------------cCccchHHHHHH
Confidence 589999999999999999999999999999999988776 3333321 168888999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH---------
Q 048743 488 QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWG--------- 558 (653)
Q Consensus 488 ~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~--------- 558 (653)
.-|.+.|+.|+..|+...+-.+...|....+. .| .++...+++-+.+-.-.| ..|...++
T Consensus 260 rgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~-sq~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~ 328 (1088)
T KOG4318|consen 260 RGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EG-SQLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIG 328 (1088)
T ss_pred HHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cc-cchhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHH
Confidence 99999999999999999888888866522221 22 223333333333322223 22222222
Q ss_pred HHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 559 DIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 559 ~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
...+.+- .|+.-...+|...+ -...+|+-++++++...|.
T Consensus 329 s~k~~fL-lg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~ 368 (1088)
T KOG4318|consen 329 STKKLFL-LGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLL 368 (1088)
T ss_pred HhhHHHH-hccccchHHHHHHH-HHHHcCCCchHHHHHhhhc
Confidence 1211111 13333334444333 3444899999999998885
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.31 E-value=1.8e-11 Score=118.89 Aligned_cols=63 Identities=5% Similarity=-0.118 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
|...|..+..+|...|+.++|+.+|++..... +-|......+..++...|+.++|.++...+.
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 33455666777777777777777777766531 2356666677777777777777777665543
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.30 E-value=1.3e-06 Score=91.02 Aligned_cols=506 Identities=11% Similarity=0.024 Sum_probs=267.0
Q ss_pred HHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHH
Q 048743 22 LLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSL 101 (653)
Q Consensus 22 ~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~ 101 (653)
+......+.-.|+.++|.+++.+.++. .......|-.|-..+-..|+ .++++..+.-..+-+|. |..-|-.+-.
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd---~eK~l~~~llAAHL~p~--d~e~W~~lad 215 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGD---IEKALNFWLLAAHLNPK--DYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHccc---HHHHHHHHHHHHhcCCC--ChHHHHHHHH
Confidence 333333444458888888888888773 22344577777777777776 67777776655554443 5677777777
Q ss_pred HHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCchhhHH
Q 048743 102 SLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFN 181 (653)
Q Consensus 102 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~yn 181 (653)
.....|.++.|.-.|.+.++.. |+ +...+-
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~--p~------------------------------------------------n~~~~~ 245 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQAN--PS------------------------------------------------NWELIY 245 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcC--Cc------------------------------------------------chHHHH
Confidence 7788888888888887776652 22 222222
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH-----HHHHHHHHHhcCChhhhHHHHHHhhhc-CCCcccchhHHHHH
Q 048743 182 LVLHACVRFGSSLKGQHIMELMSQTGVVADAHS-----IIILAQIHEMNCQRDELKKFKCYIDQL-STPFAHHYQQFYES 255 (653)
Q Consensus 182 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-----~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 255 (653)
-=..-|-+.|+...|.+-|.+|....- |...- --.+++.+...++-+.|.+.++..... .+....+ .++.
T Consensus 246 ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~e---d~ni 321 (895)
T KOG2076|consen 246 ERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLE---DLNI 321 (895)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccc---HHHH
Confidence 224456777888888888888876531 22222 223455666666667777666555442 2222222 4788
Q ss_pred HHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHH
Q 048743 256 LLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLF 335 (653)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (653)
+...|.+...++.|......+.. +...++..-.+......... .... .
T Consensus 322 ~ael~l~~~q~d~~~~~i~~~~~-r~~e~d~~e~~~~~~~~~~~--~~~~-----------------------------~ 369 (895)
T KOG2076|consen 322 LAELFLKNKQSDKALMKIVDDRN-RESEKDDSEWDTDERRREEP--NALC-----------------------------E 369 (895)
T ss_pred HHHHHHHhHHHHHhhHHHHHHhc-cccCCChhhhhhhhhccccc--cccc-----------------------------c
Confidence 88999999999999988888743 22211111000000000000 0000 0
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 048743 336 RNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHH-SFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMD 414 (653)
Q Consensus 336 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 414 (653)
....+.++..++ .+.-++......+....+......... ...+...|..+..+|...|.+..|+.+|..+...-..-+
T Consensus 370 ~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 370 VGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred CCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 112222333221 122222233333333333333333331 222233466666666666777777777666665544445
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHH--
Q 048743 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE-- 492 (653)
Q Consensus 415 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~-- 492 (653)
...|-.+..+|...|.+++|.+.|+.... ..|+.....+..+. .|-..|+.++|.+.+..+..
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Las-------------l~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLAS-------------LYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHH-------------HHHhcCCHHHHHHHHhcccCCC
Confidence 55666666666666667777666666655 34544211111111 12236666666666666442
Q ss_pred ------ccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC----------------------CCCCHHHHHHHHHHH
Q 048743 493 ------EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK----------------------IRPTVETFYYLVYGH 544 (653)
Q Consensus 493 ------~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g----------------------~~p~~~t~~~li~~~ 544 (653)
.+..|+...--...+.+...|+.++-+++-.+|.... ..-+..+...++.+-
T Consensus 514 ~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~ 593 (895)
T KOG2076|consen 514 GRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAR 593 (895)
T ss_pred ccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHH
Confidence 1123334444445555666777666555555554311 122333334444444
Q ss_pred hccCCHHHHHHHHHHH--HHHhhhCCCccC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC--CCCHH----hHHHH
Q 048743 545 SSLEMYRDITILWGDI--KRNIESGVLAVS--RDLYETLLLNFLQGGYFERVMEVIGYMKKQNM--YVDKL----MYKSE 614 (653)
Q Consensus 545 ~~~~~~~~a~~~~~~~--~~~~~~~~~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~----t~~~l 614 (653)
.+.++..........- .+.....++..+ -..+.-++..+++.|++++|+.+...+...-+ .++.. -|-.+
T Consensus 594 ~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l 673 (895)
T KOG2076|consen 594 EKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGL 673 (895)
T ss_pred hccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHH
Confidence 4444433322222111 000011122211 13355678889999999999999888875532 22221 12222
Q ss_pred H-HHhhhhhHHhhhhhHHHHHH
Q 048743 615 F-LKHHKHLYRRLKVSNARTEA 635 (653)
Q Consensus 615 ~-~~~~~~~~~~~~~~~~~~~~ 635 (653)
. +.+.+|...+..-...++..
T Consensus 674 ~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 674 KASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHhcCCHHHHHHHHHHHHHH
Confidence 2 44667777777777666664
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.29 E-value=1.7e-08 Score=103.32 Aligned_cols=298 Identities=9% Similarity=0.010 Sum_probs=178.8
Q ss_pred hHHHHHHHHH--hcCChhhHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcCChhhhHHHHHHhhhcCC-CcccchhHHHH
Q 048743 179 IFNLVLHACV--RFGSSLKGQHIMELMSQTGVVADAHS-IIILAQIHEMNCQRDELKKFKCYIDQLST-PFAHHYQQFYE 254 (653)
Q Consensus 179 ~yn~li~~~~--~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 254 (653)
.+..+.++.. ..|+++.|.+.+....+. .|+... +.....+....|+.+.+.+.+....+..+ +.+. +.-
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~----~~~ 157 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNIL----VEI 157 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchH----HHH
Confidence 3444555554 489999999999877664 465444 44556777788899998888888755321 1111 223
Q ss_pred HHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHH
Q 048743 255 SLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVL 334 (653)
Q Consensus 255 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (653)
.....+...|+++.|...++.+.+
T Consensus 158 ~~a~l~l~~~~~~~Al~~l~~l~~-------------------------------------------------------- 181 (409)
T TIGR00540 158 ARTRILLAQNELHAARHGVDKLLE-------------------------------------------------------- 181 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--------------------------------------------------------
Confidence 346667778888888888888832
Q ss_pred HhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHH-HHHHH---HHcCCHHHHHHHHHHHHHC
Q 048743 335 FRNGKLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD-VIDAL---IQLGFLEAAHDILDDMELA 409 (653)
Q Consensus 335 ~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~-li~~~---~~~g~~~~a~~~~~~m~~~ 409 (653)
..| +...+..+...+...|++++|.+++..+.+.+ ..+...+.. -..++ ...+..+.+.+.+..+.+.
T Consensus 182 -----~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 182 -----MAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred -----hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 224 33466788888888899988888888888876 222222321 11111 2222333333455555443
Q ss_pred CC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHH
Q 048743 410 GH---PMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL 486 (653)
Q Consensus 410 g~---~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~ 486 (653)
.. +.+...+..+...+...|++++|.+++++..+. .||....... .+.... ....++.+.+.+.
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~--~l~~~~---------~l~~~~~~~~~~~ 321 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP--LCLPIP---------RLKPEDNEKLEKL 321 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH--HHHHhh---------hcCCCChHHHHHH
Confidence 21 137778888888888888888888888888774 3443110000 000000 0113455566666
Q ss_pred HHHHHHccCCC-CH--HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048743 487 IQEMREEAALS-TI--YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560 (653)
Q Consensus 487 ~~~m~~~~~~p-~~--~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 560 (653)
++...+.. | |. ....++-..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.
T Consensus 322 ~e~~lk~~--p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 322 IEKQAKNV--DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHhC--CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 65555432 4 22 3445666666667777777776664333334566666666666666777777776666654
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.29 E-value=6e-09 Score=106.71 Aligned_cols=205 Identities=18% Similarity=0.115 Sum_probs=142.1
Q ss_pred chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHH---HhcCChhhhHHHHHHhhhcCCCcccchhHH
Q 048743 176 DTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIH---EMNCQRDELKKFKCYIDQLSTPFAHHYQQF 252 (653)
Q Consensus 176 ~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (653)
+...+..+...+.+.|++++|.+++..+.+.++.+.......-..++ ...+..+.+.+.+..+....+.....+...
T Consensus 186 ~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l 265 (409)
T TIGR00540 186 HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIAL 265 (409)
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHH
Confidence 55677788999999999999999999999987543332211111111 222222222233333333222112234457
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHH
Q 048743 253 YESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQEL 332 (653)
Q Consensus 253 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (653)
+..+...+...|+.++|.+++++..+
T Consensus 266 ~~~~a~~l~~~g~~~~A~~~l~~~l~------------------------------------------------------ 291 (409)
T TIGR00540 266 KIALAEHLIDCDDHDSAQEIIFDGLK------------------------------------------------------ 291 (409)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHh------------------------------------------------------
Confidence 88899999999999999999999843
Q ss_pred HHHhcCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc--ccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048743 333 VLFRNGKLLHSNRA---MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES--TLCSDVIDALIQLGFLEAAHDILDDME 407 (653)
Q Consensus 333 ~~~~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~ 407 (653)
..|+... ...........++.+.+.+.++...+.. |.+. ....++-..+.+.|++++|.+.|+...
T Consensus 292 -------~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~--p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 292 -------KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV--DDKPKCCINRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred -------hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 2233321 1122222234577788899998888776 6776 667788999999999999999999644
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 408 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
.....|+...+..+...+.+.|+.++|.+++++-..
T Consensus 363 a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 363 ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444568999999999999999999999999987643
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.29 E-value=5.2e-08 Score=101.11 Aligned_cols=352 Identities=12% Similarity=0.047 Sum_probs=241.9
Q ss_pred CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccH-HHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHH
Q 048743 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA-HSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQF 252 (653)
Q Consensus 174 ~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (653)
+.+...|-+|-..|-..|+.+++...+--.- .+.|.. .-|..+.....+.|.++.|.-.+....+..+++.. .
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~----~ 243 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWE----L 243 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchH----H
Confidence 4566789999999999999999987765444 345544 44888999999999999999999999988766544 3
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHH
Q 048743 253 YESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQEL 332 (653)
Q Consensus 253 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (653)
+-.-+..|-+.|+...|..-|.++.+....+.|..
T Consensus 244 ~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er--------------------------------------------- 278 (895)
T KOG2076|consen 244 IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER--------------------------------------------- 278 (895)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH---------------------------------------------
Confidence 45556788899999999999999843111000000
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC--
Q 048743 333 VLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG-- 410 (653)
Q Consensus 333 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-- 410 (653)
-....-.+++.+...++-+.|.+.++.....+.-..+...++++...|.+..+++.|.....++....
T Consensus 279 ----------~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e 348 (895)
T KOG2076|consen 279 ----------IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESE 348 (895)
T ss_pred ----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccC
Confidence 01122345666777777788888888877644334444558899999999999999888888776521
Q ss_pred -------------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhh
Q 048743 411 -------------------------HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD 465 (653)
Q Consensus 411 -------------------------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~ 465 (653)
+.++... -.++-++.+....+....+...+.+....|+....++..
T Consensus 349 ~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d-------- 419 (895)
T KOG2076|consen 349 KDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLD-------- 419 (895)
T ss_pred CChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHH--------
Confidence 2222222 123334555555566666666666665555443223222
Q ss_pred hcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHH
Q 048743 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV-ETFYYLVYGH 544 (653)
Q Consensus 466 ~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~ 544 (653)
+.++|...|++..|..+|..+.....--+...|--+..+|...|.+++|.+.|+..... .|+. ..-..|-..+
T Consensus 420 ----~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~ 493 (895)
T KOG2076|consen 420 ----LADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLY 493 (895)
T ss_pred ----HHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHH
Confidence 22456678999999999999987655457888999999999999999999999988864 3442 2333455667
Q ss_pred hccCCHHHHHHHHHHHHHH----hhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 048743 545 SSLEMYRDITILWGDIKRN----IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601 (653)
Q Consensus 545 ~~~~~~~~a~~~~~~~~~~----~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 601 (653)
-..|+.++|.+.+..+... .+..+..|+...--...+.+...|+.++-+.+..+|..
T Consensus 494 ~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 494 QQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8899999999888765311 13335566677777777888889998887766666653
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.29 E-value=2.1e-11 Score=118.36 Aligned_cols=260 Identities=17% Similarity=0.085 Sum_probs=109.8
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCC--
Q 048743 98 KLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKP-- 175 (653)
Q Consensus 98 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 175 (653)
.+...+.+.|++++|++++.+-....-.|+...|-.+ +...+...++.+.|.+.+++....
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~-----------------~a~La~~~~~~~~A~~ay~~l~~~~~ 75 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRL-----------------LADLAWSLGDYDEAIEAYEKLLASDK 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc-----------------cccccccccccccccccccccccccc
Confidence 3355666777777777777544333223343333332 222333334555666666544422
Q ss_pred -chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHH
Q 048743 176 -DTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYE 254 (653)
Q Consensus 176 -~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (653)
+...|..++.. ...+++++|.+++....+. .++...+..++..+.+.++++++.++++.+..... ...+..+|.
T Consensus 76 ~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~ 150 (280)
T PF13429_consen 76 ANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA--APDSARFWL 150 (280)
T ss_dssp ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHH
T ss_pred cccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--CCCCHHHHH
Confidence 33456666666 6889999999988877655 35666677788888899999999999888775322 234556788
Q ss_pred HHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHH
Q 048743 255 SLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVL 334 (653)
Q Consensus 255 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (653)
.+...+.+.|+.++|.+.+++..+
T Consensus 151 ~~a~~~~~~G~~~~A~~~~~~al~-------------------------------------------------------- 174 (280)
T PF13429_consen 151 ALAEIYEQLGDPDKALRDYRKALE-------------------------------------------------------- 174 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHH--------------------------------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--------------------------------------------------------
Confidence 888899999999999999998842
Q ss_pred HhcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048743 335 FRNGKLLHS-NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413 (653)
Q Consensus 335 ~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 413 (653)
..|+ ....+.++..+...|+.+++..+++...+.. +.+...+..+..+|...|+.++|+.+|++..... +.
T Consensus 175 -----~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 175 -----LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp -----H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred -----cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 4465 5567888999999999999999999888876 6777778999999999999999999999988743 34
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 414 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
|+.....+.+++...|+.++|.++.++..+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 888888999999999999999998876643
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=2.7e-08 Score=94.77 Aligned_cols=256 Identities=9% Similarity=0.020 Sum_probs=174.7
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH-H-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048743 353 GYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALI-Q-LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKM 430 (653)
Q Consensus 353 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~-~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 430 (653)
-+.++|+++.|.++++-+.+......... -+.|-..+. + -.++..|.+.-+...... +-+......--+.-..+|+
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saa-a~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAA-ANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHH-hhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 46789999999999999988774443333 333322222 2 235666766665544321 1122222222223345689
Q ss_pred hHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 048743 431 FREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFC 510 (653)
Q Consensus 431 ~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~ 510 (653)
+++|.+.+++.... |.+.+-.+...=+ .+-..|++++|+..|-++..--. -++.+.-.+...|-
T Consensus 506 ~dka~~~ykeal~n----dasc~ealfnigl-----------t~e~~~~ldeald~f~klh~il~-nn~evl~qianiye 569 (840)
T KOG2003|consen 506 LDKAAEFYKEALNN----DASCTEALFNIGL-----------TAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYE 569 (840)
T ss_pred HHHHHHHHHHHHcC----chHHHHHHHHhcc-----------cHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Confidence 99999999988764 2222222211111 13358999999999977664211 26667777888888
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHH
Q 048743 511 KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFE 590 (653)
Q Consensus 511 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 590 (653)
...+..+|++++-+.... ++-|.....-|...|-+.|+-..|.+.+-+-.+ -++-+..+...|..-|.....++
T Consensus 570 ~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-----yfp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-----YFPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-----ccCcchHHHHHHHHHHHhhHHHH
Confidence 899999999998765432 444677888999999999999999887754332 35668889998998899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHH---HHhhhhhHHhhhhhHHHHH
Q 048743 591 RVMEVIGYMKKQNMYVDKLMYKSEF---LKHHKHLYRRLKVSNARTE 634 (653)
Q Consensus 591 ~a~~~~~~m~~~g~~p~~~t~~~l~---~~~~~~~~~~~~~~~~~~~ 634 (653)
+++.+|++.- =+.|+..-|-.++ .+..|+..++..+...+.-
T Consensus 644 kai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 644 KAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999764 5789999999988 3456788888877776654
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=4.8e-08 Score=89.48 Aligned_cols=298 Identities=12% Similarity=0.025 Sum_probs=170.7
Q ss_pred hcCChhhHHHHHHHHHhcCCCccHH-HHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHH
Q 048743 189 RFGSSLKGQHIMELMSQTGVVADAH-SIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDID 267 (653)
Q Consensus 189 ~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 267 (653)
-+.+.++|.++|-+|.+. .|..+ +..+|-+.|.+.|..|.|.+++..+...++.....-....-.|-.=|...|-+|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 367899999999999974 33332 345788888899999999999988877554332222223334445555566666
Q ss_pred HHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHH
Q 048743 268 AAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAM 347 (653)
Q Consensus 268 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 347 (653)
.|+.+|..+.+.... -....
T Consensus 125 RAE~~f~~L~de~ef------------------------------------------------------------a~~Al 144 (389)
T COG2956 125 RAEDIFNQLVDEGEF------------------------------------------------------------AEGAL 144 (389)
T ss_pred HHHHHHHHHhcchhh------------------------------------------------------------hHHHH
Confidence 666666655210100 01122
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048743 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK 427 (653)
Q Consensus 348 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 427 (653)
-.|+..|-...+|++|++.-+++.+.++.+. +.-| ...|.-|...+..
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~-----~~eI---------------------------AqfyCELAq~~~~ 192 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTY-----RVEI---------------------------AQFYCELAQQALA 192 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccc-----hhHH---------------------------HHHHHHHHHHHhh
Confidence 3455555566666666666555555442111 1111 0122233333334
Q ss_pred cCChHHHHHHHHHHHHcCCccCc-hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 048743 428 VKMFREAEALLKQMRKSCLVQNL-SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506 (653)
Q Consensus 428 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li 506 (653)
..+.+.|..++.+..+. .|.. ..+++.. +.+...|++..|.+.++...+.+..--..+...|.
T Consensus 193 ~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG--------------~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 193 SSDVDRARELLKKALQA--DKKCVRASIILG--------------RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred hhhHHHHHHHHHHHHhh--Cccceehhhhhh--------------HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 44445555555444432 1222 1112211 11222455555555555555544322345667899
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHh-
Q 048743 507 YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ- 585 (653)
Q Consensus 507 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~- 585 (653)
.+|...|+.++.+..+..+.+....++.. ..+-+--....-.+.|..++.+-. .-+|+...+..+|+.-..
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql------~r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETNTGADAE--LMLADLIELQEGIDAAQAYLTRQL------RRKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHccCCccHH--HHHHHHHHHhhChHHHHHHHHHHH------hhCCcHHHHHHHHHhhhcc
Confidence 99999999999999999998864444433 333343344445666666665443 457999999999987553
Q ss_pred --CCCHHHHHHHHHHHHhCCC
Q 048743 586 --GGYFERVMEVIGYMKKQNM 604 (653)
Q Consensus 586 --~g~~~~a~~~~~~m~~~g~ 604 (653)
-|..++-..++..|....+
T Consensus 329 aeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 329 AEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred ccccchhhhHHHHHHHHHHHH
Confidence 3557778888888875543
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=1.3e-06 Score=84.30 Aligned_cols=439 Identities=9% Similarity=-0.003 Sum_probs=294.7
Q ss_pred hhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHH
Q 048743 73 LQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFL 152 (653)
Q Consensus 73 ~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l 152 (653)
+.+|..+|++..... ..+...|-..+.+=.++..+..|..++++....-...|. .+--.
T Consensus 89 ~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-------------------lWyKY 147 (677)
T KOG1915|consen 89 IQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-------------------LWYKY 147 (677)
T ss_pred HHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-------------------HHHHH
Confidence 677888888765432 235556666777778888888888888887654222121 11223
Q ss_pred HHHHHHhhhhhhhhcCCccC--CCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhh
Q 048743 153 IQLCDVFLHLSAEKSNGAEL--IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDE 230 (653)
Q Consensus 153 ~~~~~~~~~~~~a~~~~~~~--~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 230 (653)
+-+....|++..|+++|++- ..|+..+|++.|+-=.+-+.++.|..+|+...- +.|+..+|.-...--.+.|....
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 45556677889999999844 589999999999999999999999999999886 46999999988888888999999
Q ss_pred hHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhh
Q 048743 231 LKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLK 310 (653)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (653)
+.+++......-..+ .....++.+...-=.++..++.|.-+|+-... ..|.+
T Consensus 226 aR~VyerAie~~~~d-~~~e~lfvaFA~fEe~qkE~ERar~iykyAld---~~pk~------------------------ 277 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDD-EEAEILFVAFAEFEERQKEYERARFIYKYALD---HIPKG------------------------ 277 (677)
T ss_pred HHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCcc------------------------
Confidence 999988776542111 11112233332222344555666555544311 00000
Q ss_pred hccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC---hHHHHHH-----HHHHHhcCCCCCCccc
Q 048743 311 LQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGK---NSELSWL-----LLSIKKEHHSFGESTL 382 (653)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~-----~~~m~~~~~~~~~~~~ 382 (653)
-....|.....-=-+-|+ .+.++-- ++.+.+.+ |.|-.+
T Consensus 278 -------------------------------raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n--p~nYDs 324 (677)
T KOG1915|consen 278 -------------------------------RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN--PYNYDS 324 (677)
T ss_pred -------------------------------cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC--CCCchH
Confidence 001122222222223333 3333322 55666666 777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHH--------HHHHHcCChHHHHHHHHHHHHcCCccCchh
Q 048743 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDST--TYKSLL--------TAYYKVKMFREAEALLKQMRKSCLVQNLSC 452 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li--------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 452 (653)
|-..++.-...|+.+...++|++.... ++|-.. .|...| -.-....+++.+.++|+...+ +.|...+
T Consensus 325 WfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkF 401 (677)
T KOG1915|consen 325 WFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKF 401 (677)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccc
Confidence 888888888899999999999998864 555321 222222 122355788999999999988 6777644
Q ss_pred hHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 048743 453 EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP 532 (653)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 532 (653)
+..-..++.+.. -.+..++..|.+++-... |..|-..+|...|..=.+.+.++.+..++++.++.+. -
T Consensus 402 tFaKiWlmyA~f---------eIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e 469 (677)
T KOG1915|consen 402 TFAKIWLMYAQF---------EIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-E 469 (677)
T ss_pred hHHHHHHHHHHH---------HHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-H
Confidence 443333333322 235778899999887654 4558888999999999999999999999999998642 2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 048743 533 TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612 (653)
Q Consensus 533 ~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 612 (653)
|-.+|.....-=...|+.+.|..+|....+ ...+..-...|.+.|+-=...|.+++|..+++.+.+.. +-...|-
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~---qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWi 544 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAIS---QPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWI 544 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhc---CcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHH
Confidence 566777777777788999999999988762 22333345567777777778999999999999998663 2233454
Q ss_pred HHH
Q 048743 613 SEF 615 (653)
Q Consensus 613 ~l~ 615 (653)
+..
T Consensus 545 sFA 547 (677)
T KOG1915|consen 545 SFA 547 (677)
T ss_pred hHH
Confidence 444
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.20 E-value=7e-08 Score=91.25 Aligned_cols=235 Identities=12% Similarity=-0.029 Sum_probs=168.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDS------- 415 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------- 415 (653)
+...+-+........|+...|..-+.++.+.+ |.++.+......+|.+.|++.....++..|.+.|.--|.
T Consensus 152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~ 229 (400)
T COG3071 152 TLAVELTRARLLLNRRDYPAARENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ 229 (400)
T ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH
Confidence 33445566667778888888888888888887 777777888899999999999999999999888876554
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHcc
Q 048743 416 TTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEA 494 (653)
Q Consensus 416 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~ 494 (653)
.+|..+++-....+..+.-...++..... .-.|.....++. . +..+|+.+.|.++..+-.+.+
T Consensus 230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~-----~-----------li~l~~~~~A~~~i~~~Lk~~ 293 (400)
T COG3071 230 QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAE-----R-----------LIRLGDHDEAQEIIEDALKRQ 293 (400)
T ss_pred HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHH-----H-----------HHHcCChHHHHHHHHHHHHhc
Confidence 36666666666656555555555555432 122332222221 1 334889999999998888887
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCH
Q 048743 495 ALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE-MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR 573 (653)
Q Consensus 495 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~ 573 (653)
-.|+.. ..-.+.+-++.+.-++..+.... .+..| ..+..|-.-|.+.+.|.+|..+|+... ...|+.
T Consensus 294 ~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl------~~~~s~ 361 (400)
T COG3071 294 WDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAAL------KLRPSA 361 (400)
T ss_pred cChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHH------hcCCCh
Confidence 766522 22344567777777777776654 44444 667788889999999999999998665 678999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 048743 574 DLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607 (653)
Q Consensus 574 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 607 (653)
.+|+.+.+++.+.|+.++|.++.++-.-.-.+|+
T Consensus 362 ~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 362 SDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999888764434443
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=9.2e-09 Score=103.26 Aligned_cols=279 Identities=12% Similarity=0.043 Sum_probs=179.8
Q ss_pred ChhhHHHHHHHHHhcCCCccH-HHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHH-HH
Q 048743 192 SSLKGQHIMELMSQTGVVADA-HSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDID-AA 269 (653)
Q Consensus 192 ~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A 269 (653)
+..+|..+|....+. .+|. .....+..+|-+.++.++++++|+.+.+.. |....+..+|.+.+.-+-+.-.+. -|
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~-p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE-PYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccchhHHHHHHHHHHhhHHHHHHH
Confidence 456777777774443 3343 334467777778888888888888777654 223334445666655432211100 11
Q ss_pred HHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHH
Q 048743 270 GELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAK 349 (653)
Q Consensus 270 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 349 (653)
..+.+. -+-++.+|..
T Consensus 411 q~Li~~----------------------------------------------------------------~~~sPesWca 426 (638)
T KOG1126|consen 411 QDLIDT----------------------------------------------------------------DPNSPESWCA 426 (638)
T ss_pred HHHHhh----------------------------------------------------------------CCCCcHHHHH
Confidence 111111 1234568999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHH
Q 048743 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS---LLTAYY 426 (653)
Q Consensus 350 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~---li~~~~ 426 (653)
+-++|.-+++.+.|++.|++..+-+ |....+|+.+-.-+.....+|.|...|+.... .|+..||+ |--.|.
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYGLGTVYL 500 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHhhhhhee
Confidence 9999999999999999999998877 77778899888888899999999999987665 46666665 556788
Q ss_pred HcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 048743 427 KVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506 (653)
Q Consensus 427 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li 506 (653)
+.++++.|+-.|+...+ +.|... .++. ++... +-+.|+.++|++++++....+-+ |+..---.+
T Consensus 501 Kqek~e~Ae~~fqkA~~--INP~ns--vi~~-~~g~~----------~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVE--INPSNS--VILC-HIGRI----------QHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred ccchhhHHHHHHHhhhc--CCccch--hHHh-hhhHH----------HHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 99999999999988866 556532 2221 11111 22366777777777776654421 333333344
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 507 YFFCKGKMIGDALKIYRRMQEMKIRPTV-ETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 507 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
..+...+++++|+..++++++. .|+. ..|..+...|.+.|+.+.|+.-|..+.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 4455567777777777777663 4443 445566667777777777777666654
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=2.4e-07 Score=85.03 Aligned_cols=293 Identities=12% Similarity=0.074 Sum_probs=194.3
Q ss_pred hhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHH
Q 048743 73 LQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFL 152 (653)
Q Consensus 73 ~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l 152 (653)
.++|.++|.+|.+..+. +.++.-+|-+.|-+.|.++.|+++.+.+.++ ||.. +..
T Consensus 51 ~dKAvdlF~e~l~~d~~--t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT-~~q------------------- 105 (389)
T COG2956 51 PDKAVDLFLEMLQEDPE--TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLT-FEQ------------------- 105 (389)
T ss_pred cchHHHHHHHHHhcCch--hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCc-hHH-------------------
Confidence 47899999999876543 6777788888999999999999999888764 3321 110
Q ss_pred HHHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhH
Q 048743 153 IQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELK 232 (653)
Q Consensus 153 ~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 232 (653)
-...--.|-+-|...|-++.|+++|..+.+.|.. -...
T Consensus 106 -----------------------r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~A------------------ 143 (389)
T COG2956 106 -----------------------RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGA------------------ 143 (389)
T ss_pred -----------------------HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHH------------------
Confidence 0112234566688899999999999998875421 1111
Q ss_pred HHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhc
Q 048743 233 KFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQ 312 (653)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (653)
..-|+..|-...+|++|.++-+++.+..+ .+
T Consensus 144 --------------------lqqLl~IYQ~treW~KAId~A~~L~k~~~-q~---------------------------- 174 (389)
T COG2956 144 --------------------LQQLLNIYQATREWEKAIDVAERLVKLGG-QT---------------------------- 174 (389)
T ss_pred --------------------HHHHHHHHHHhhHHHHHHHHHHHHHHcCC-cc----------------------------
Confidence 23445555555566666665555521000 00
Q ss_pred cchhhhHHHHHHhhhhhHHHHHHhcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 048743 313 IMPELLEKDSILKMEGKQELVLFRNGKLLHSN-RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALI 391 (653)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 391 (653)
..... .-|.-|-..+.-..+++.|..++.+..+.+ +.....--.+-+.+.
T Consensus 175 ---------------------------~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~ 225 (389)
T COG2956 175 ---------------------------YRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVEL 225 (389)
T ss_pred ---------------------------chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHH
Confidence 00001 124555666667788899999999888877 555554455667788
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhccccc
Q 048743 392 QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFT 471 (653)
Q Consensus 392 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~ 471 (653)
..|+++.|.+.++...+.+..--..+...|..+|.+.|++++.+..+..+.+....++. ..++.-.+..
T Consensus 226 ~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~--------- 294 (389)
T COG2956 226 AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIEL--------- 294 (389)
T ss_pred hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHH---------
Confidence 88999999999999988865445567888999999999999999999999886554543 1222111111
Q ss_pred ccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhc
Q 048743 472 DTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK---GKMIGDALKIYRRMQEM 528 (653)
Q Consensus 472 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~---~g~~~~a~~~~~~m~~~ 528 (653)
....+.|...+.+-..+. |+...+..+|+.-.. .|...+-+.+++.|...
T Consensus 295 -----~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 295 -----QEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred -----hhChHHHHHHHHHHHhhC--CcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 344566666665555443 889889999886653 34566777778888754
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=2.1e-08 Score=100.79 Aligned_cols=50 Identities=10% Similarity=-0.013 Sum_probs=25.9
Q ss_pred cCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 048743 477 MDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 528 (653)
.++.++|...|+++.+.- | +...|-.+...|-+.|+.+.|+.-|.-+.+.
T Consensus 570 ~~~~~eal~~LEeLk~~v--P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 570 LGRYVEALQELEELKELV--PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hcchHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 344444444444444321 3 4444555666666666666666666555543
No 50
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.14 E-value=1.2e-05 Score=80.71 Aligned_cols=504 Identities=11% Similarity=0.018 Sum_probs=295.8
Q ss_pred hHHHHHHHHHHHHhccchhHHHHHHHHhhhhc------CCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCch
Q 048743 18 SREVLLRKLESASKNHQVGEAWETFNDFQRLH------GIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLL 91 (653)
Q Consensus 18 ~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 91 (653)
+++..+..|..+++.+++++|.+.+....... +..+...|..+-+.+++..+...--..-.++.... +.-+
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi---~rft 244 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI---RRFT 244 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc---ccCc
Confidence 34456677888889999999999888876532 22333466666666655543211112222332222 1223
Q ss_pred h--HHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHH-Hhh------hh
Q 048743 92 Q--LDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCD-VFL------HL 162 (653)
Q Consensus 92 ~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~-~~~------~~ 162 (653)
| ...|.+|...|.+.|.+++|..+|++-... .-+...|+.+...++.-.... ....+++.. ..+ ++
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~---~~~~me~a~~~~~n~ed~~dl 319 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESC---VAAKMELADEESGNEEDDVDL 319 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHH---HHHHHhhhhhcccChhhhhhH
Confidence 4 346899999999999999999999988765 233444555544333110000 000000000 000 00
Q ss_pred hhhhcCCc---------------cCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcc-----HHH-HHHHHHH
Q 048743 163 SAEKSNGA---------------ELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD-----AHS-IIILAQI 221 (653)
Q Consensus 163 ~~a~~~~~---------------~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-----~~t-~~~ll~~ 221 (653)
+....-|+ +..+-++..|..-+. +..|+..+....|.+..+. +.|- ..+ |..+.+.
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHH
Confidence 00000011 111223333433222 3467778888888888764 3332 223 7788888
Q ss_pred HHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccC
Q 048743 222 HEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIG 301 (653)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (653)
|-+.|+++.|..+|+...+.+-+.+..-..+|-.-..+=.+..+++.|+++.++. -.+|.+..+
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A----~~vP~~~~~------------ 460 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA----THVPTNPEL------------ 460 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh----hcCCCchhh------------
Confidence 9999999999999999988766665544556666666667778888888877665 223322100
Q ss_pred CCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcc
Q 048743 302 SPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGEST 381 (653)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 381 (653)
.+...+.. .+..+.-+...|...++.--..|-++....+++.+..-.+..|-+.
T Consensus 461 -~~yd~~~p-------------------------vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii 514 (835)
T KOG2047|consen 461 -EYYDNSEP-------------------------VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII 514 (835)
T ss_pred -hhhcCCCc-------------------------HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence 00000000 0111334556777777777778899999999999988874333322
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHc---CChHHHHHHHHHHHHcCCccCchhhHH-H
Q 048743 382 LCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST-TYKSLLTAYYKV---KMFREAEALLKQMRKSCLVQNLSCEMV-V 456 (653)
Q Consensus 382 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~-~ 456 (653)
-.....+-...-++++.+++++-...=-.|++. .|+.-+.-+.+. ..++.|..+|++..+ |.+|...-++. .
T Consensus 515 --~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 515 --INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLL 591 (835)
T ss_pred --HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Confidence 222223335566788888887644432345543 556655554442 468999999999998 67776533322 2
Q ss_pred HhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH
Q 048743 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS--TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534 (653)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 534 (653)
.+-+.. +-|....|..++++... ++++ -...||+.|.-.+..=-+.....+|++.++. -||.
T Consensus 592 YA~lEE-------------e~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~ 655 (835)
T KOG2047|consen 592 YAKLEE-------------EHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDS 655 (835)
T ss_pred HHHHHH-------------HhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChH
Confidence 222211 35777889999988543 3444 3456899888666544455666777777764 5665
Q ss_pred HHHH---HHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 535 ETFY---YLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 535 ~t~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
..-. -.-..=++.|.++.|..++..-. +-..-..+...|.+.=.-=.++|+- +.+++|.
T Consensus 656 ~~r~mclrFAdlEtklGEidRARaIya~~s---q~~dPr~~~~fW~twk~FEvrHGne----dT~keML 717 (835)
T KOG2047|consen 656 KAREMCLRFADLETKLGEIDRARAIYAHGS---QICDPRVTTEFWDTWKEFEVRHGNE----DTYKEML 717 (835)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhh---hcCCCcCChHHHHHHHHHHHhcCCH----HHHHHHH
Confidence 5433 23334568899999999886543 1123334666788777777899983 4455554
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.09 E-value=5.7e-08 Score=91.70 Aligned_cols=202 Identities=8% Similarity=-0.052 Sum_probs=163.7
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHH
Q 048743 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD-AHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFY 253 (653)
Q Consensus 175 ~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (653)
.....+..+...+...|++++|.+.|++..+.. |+ ...+..+...+...|+.++|.+.++......+.. ...+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~ 102 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN----GDVL 102 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHH
Confidence 345678888999999999999999999998753 44 4567788899999999999999999887764322 2367
Q ss_pred HHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHH
Q 048743 254 ESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELV 333 (653)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (653)
..+...+...|++++|.+.|++....
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~------------------------------------------------------ 128 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIED------------------------------------------------------ 128 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc------------------------------------------------------
Confidence 88888999999999999999998321
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048743 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413 (653)
Q Consensus 334 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 413 (653)
.........+..+...+...|++++|...+.+..... +.+...+..+...+...|++++|...+++..+. .+.
T Consensus 129 ----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~ 201 (234)
T TIGR02521 129 ----PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQ 201 (234)
T ss_pred ----cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC
Confidence 0011223456667788899999999999999998876 556667889999999999999999999999876 445
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 414 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
+...+..+...+...|+.++|..+.+.+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 202 TAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 677788888899999999999999888765
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.08 E-value=1.3e-07 Score=89.22 Aligned_cols=201 Identities=13% Similarity=0.025 Sum_probs=130.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (653)
....+..+...+...|++++|...+++..+.. |.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 34566777788888888888888888887765 5666667788888888888888888888887653 23556677777
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHH
Q 048743 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502 (653)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y 502 (653)
..+...|++++|...++...+....|. ....+
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------------------------------------~~~~~ 138 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQ------------------------------------------------PARSL 138 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhcccccc------------------------------------------------chHHH
Confidence 788888888888888888765321111 12233
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHH
Q 048743 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLN 582 (653)
Q Consensus 503 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~ 582 (653)
..+...+...|++++|.+.+.+..... +.+...+..+...+...|++++|..+++...+. ...+...+..+...
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~ 212 (234)
T TIGR02521 139 ENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-----YNQTAESLWLGIRI 212 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence 444555566666666666666665532 113445556666666666666666666655422 12344445555556
Q ss_pred HHhCCCHHHHHHHHHHHH
Q 048743 583 FLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~ 600 (653)
+...|+.++|..+.+.+.
T Consensus 213 ~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 213 ARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 666666666666666554
No 53
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.07 E-value=2.7e-05 Score=78.48 Aligned_cols=455 Identities=10% Similarity=-0.037 Sum_probs=297.0
Q ss_pred HHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 048743 28 SASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQ 107 (653)
Q Consensus 28 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g 107 (653)
+...-...+.|.-+++...+. .|.. ..|.-++++... ++.|-.++.+..+.-|. +...|.+....=-.+|
T Consensus 385 aAVelE~~~darilL~rAvec--cp~s---~dLwlAlarLet---YenAkkvLNkaRe~ipt--d~~IWitaa~LEE~ng 454 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVEC--CPQS---MDLWLALARLET---YENAKKVLNKAREIIPT--DREIWITAAKLEEANG 454 (913)
T ss_pred HHHhccChHHHHHHHHHHHHh--ccch---HHHHHHHHHHHH---HHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHhcC
Confidence 334455666688888877763 2322 133344555544 67788888877654433 6677777777777788
Q ss_pred CCchHHHHHHHH----HcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCchhhHHHH
Q 048743 108 MPVPASMILRLM----LGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLV 183 (653)
Q Consensus 108 ~~~~a~~~~~~m----~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~l 183 (653)
+++.+..++++- ...|+..+..-|-.=-..|-..|....+ -.++...-..|.- ..--..+|+.-
T Consensus 455 n~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~Tc--QAIi~avigigvE----------eed~~~tw~~d 522 (913)
T KOG0495|consen 455 NVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITC--QAIIRAVIGIGVE----------EEDRKSTWLDD 522 (913)
T ss_pred CHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhH--HHHHHHHHhhccc----------cchhHhHHhhh
Confidence 888888777554 3457777666665444444333211110 0111111111100 01224578888
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCccHH-HHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhc
Q 048743 184 LHACVRFGSSLKGQHIMELMSQTGVVADAH-SIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFK 262 (653)
Q Consensus 184 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 262 (653)
-+.|.+.+-++-|..+|....+. -|... .|.-....-...|..+....+++.....-+ .. ...|-.....+-.
T Consensus 523 a~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-ka---e~lwlM~ake~w~ 596 (913)
T KOG0495|consen 523 AQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KA---EILWLMYAKEKWK 596 (913)
T ss_pred HHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cc---hhHHHHHHHHHHh
Confidence 89999999999999999988864 45444 477777777778999999998888876532 11 2346666777788
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCC
Q 048743 263 FDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLH 342 (653)
Q Consensus 263 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 342 (653)
.||+..|..++....+ ..|
T Consensus 597 agdv~~ar~il~~af~-------------------------------------------------------------~~p 615 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFE-------------------------------------------------------------ANP 615 (913)
T ss_pred cCCcHHHHHHHHHHHH-------------------------------------------------------------hCC
Confidence 8999999999988722 223
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048743 343 -SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSL 421 (653)
Q Consensus 343 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 421 (653)
+...|-..+..-..+..++.|..+|.+....+ +...+|.--+..---.+..++|.+++++..+. ++--...|..+
T Consensus 616 nseeiwlaavKle~en~e~eraR~llakar~~s---gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lml 691 (913)
T KOG0495|consen 616 NSEEIWLAAVKLEFENDELERARDLLAKARSIS---GTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLML 691 (913)
T ss_pred CcHHHHHHHHHHhhccccHHHHHHHHHHHhccC---CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHH
Confidence 45688888899999999999999999988765 34445777777777789999999999888774 43345577788
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHH
Q 048743 422 LTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIY 500 (653)
Q Consensus 422 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~ 500 (653)
-..+-+.++.+.|...|..-.+ ..|.. +.+...+..+-+ +.|++-.|..+|+.-.-++ | |..
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k--~cP~~---ipLWllLakleE----------k~~~~~rAR~ildrarlkN--Pk~~~ 754 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTK--KCPNS---IPLWLLLAKLEE----------KDGQLVRARSILDRARLKN--PKNAL 754 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhccc--cCCCC---chHHHHHHHHHH----------HhcchhhHHHHHHHHHhcC--CCcch
Confidence 8889999999999888876544 34543 223333333333 4678899999999887666 5 888
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHH
Q 048743 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLL 580 (653)
Q Consensus 501 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li 580 (653)
.|-..|+.=.+.|..+.|..+..+..+. ++-+...|.--|...-+.++-.... +.++ ...-|..+.-.+.
T Consensus 755 lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~---DALk------kce~dphVllaia 824 (913)
T KOG0495|consen 755 LWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSI---DALK------KCEHDPHVLLAIA 824 (913)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHH---HHHH------hccCCchhHHHHH
Confidence 9999999999999999999888877664 2333344555555544444422222 2221 1223444455555
Q ss_pred HHHHhCCCHHHHHHHHHHHHhC
Q 048743 581 LNFLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 581 ~~~~~~g~~~~a~~~~~~m~~~ 602 (653)
..|-...++++|.+-|.+..+.
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 5555666666666666666543
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.8e-06 Score=84.05 Aligned_cols=490 Identities=11% Similarity=0.011 Sum_probs=297.4
Q ss_pred chHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHH
Q 048743 17 SSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLL 96 (653)
Q Consensus 17 p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~ 96 (653)
-+.+-+.++++-+..+.++..|.-+-+...... -++..--++..++.-.++ .++|..+...-.- ...|..+.
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~---y~ra~~lit~~~l---e~~d~~cr 85 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQ---YERAAHLITTYKL---EKRDIACR 85 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhH---HHHHHHHHHHhhh---hhhhHHHH
Confidence 345566777778888889999988888777654 344444466666666666 6777776654311 22477788
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHH--cCccCCCchh-HHHHHHHHhhcccccccchHHHHH-------HHHHhhhhhhhh
Q 048743 97 AKLSLSLARAQMPVPASMILRLML--GRENLPCSDL-LLLVFVHMVKTEIGTCLASNFLIQ-------LCDVFLHLSAEK 166 (653)
Q Consensus 97 ~~li~~~~~~g~~~~a~~~~~~m~--~~g~~p~~~~-~~~li~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~a~ 166 (653)
......+.+..+++.|..++..-. ..++.-+..+ -+.+ -..+.......+.... .+....+.+.|+
T Consensus 86 yL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l----~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar 161 (611)
T KOG1173|consen 86 YLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTL----ELNSAGEDLMINLESSICYLRGKVYVALDNREEAR 161 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhcee----ccCcccccccccchhceeeeeeehhhhhccHHHHH
Confidence 888889999999999999997321 0111111111 0000 0000000000000111 111112344444
Q ss_pred cCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC----CccHHHHHHHHHHHH-hcCChhhhHHHHHHhhhc
Q 048743 167 SNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGV----VADAHSIIILAQIHE-MNCQRDELKKFKCYIDQL 241 (653)
Q Consensus 167 ~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~----~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~~~~~ 241 (653)
..|......|+..|..+..--.. ..-.+.+.|+.+..... .-+......+..... +..+.+.....- +.
T Consensus 162 ~~Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~----~~ 235 (611)
T KOG1173|consen 162 DKYKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNE----DE 235 (611)
T ss_pred HHHHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCc----hh
Confidence 44444445555555444332211 11122222222221110 111111111111110 000000000000 00
Q ss_pred CCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHH
Q 048743 242 STPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKD 321 (653)
Q Consensus 242 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (653)
.......+..+...-.+-+...+++.+..++++...+
T Consensus 236 sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle------------------------------------------- 272 (611)
T KOG1173|consen 236 SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLE------------------------------------------- 272 (611)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHh-------------------------------------------
Confidence 0001122223344455556667788888888777732
Q ss_pred HHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHH
Q 048743 322 SILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHD 401 (653)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 401 (653)
. .++....+..-|.++...|+..+-..+=.++.+.. |....+|-++---|--.|+..+|.+
T Consensus 273 ---------------~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~YYl~i~k~seARr 333 (611)
T KOG1173|consen 273 ---------------K--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGCYYLMIGKYSEARR 333 (611)
T ss_pred ---------------h--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHHHHHHhcCcHHHHH
Confidence 1 22333445556678888999888888888888887 8888889999998988999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--C-CccCchhhHHHHhhHHHHhhhccccccccccc
Q 048743 402 ILDDMELAGHPM-DSTTYKSLLTAYYKVKMFREAEALLKQMRKS--C-LVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477 (653)
Q Consensus 402 ~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~-~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 477 (653)
.|.+...- .| =...|-.+-..|+-.|+.|+|...+....+. | ..|..+ +-+. |.+.
T Consensus 334 y~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgme----------------y~~t 393 (611)
T KOG1173|consen 334 YFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGME----------------YMRT 393 (611)
T ss_pred HHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHH----------------HHHh
Confidence 99986542 22 2357788888999999999999988877652 2 233211 1111 4557
Q ss_pred CCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCC----CCHHHHHHHHHHHhccCCH
Q 048743 478 DKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEM--KIR----PTVETFYYLVYGHSSLEMY 550 (653)
Q Consensus 478 ~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~----p~~~t~~~li~~~~~~~~~ 550 (653)
++...|.+.|.+... +.| |+..++-+--.....+.+.+|..+|+..... .+. .-..+++.|..+|.+.+.+
T Consensus 394 ~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred ccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 899999999987665 336 7777777766667788999999999988731 111 1345788999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048743 551 RDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEF 615 (653)
Q Consensus 551 ~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 615 (653)
++|+..++..... .+-+..+|.++.-.|...|+++.|.+.|.+.. ++.||..+.+.++
T Consensus 472 ~eAI~~~q~aL~l-----~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 472 EEAIDYYQKALLL-----SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELL 529 (611)
T ss_pred HHHHHHHHHHHHc-----CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHH
Confidence 9999999887632 34578889999999999999999999999887 7899998888887
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.05 E-value=1.6e-06 Score=82.37 Aligned_cols=286 Identities=15% Similarity=0.067 Sum_probs=201.8
Q ss_pred hhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHH
Q 048743 73 LQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFL 152 (653)
Q Consensus 73 ~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l 152 (653)
+.+|.+++.+-.+ .+.. -.-.|..-..+--..|+.+.+-.++.+..+.--.++...+-+.-+.....+
T Consensus 100 ~~qAEkl~~rnae-~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~---------- 167 (400)
T COG3071 100 FQQAEKLLRRNAE-HGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR---------- 167 (400)
T ss_pred HHHHHHHHHHhhh-cCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC----------
Confidence 6888888877533 3222 233455556677778899999999988887633444444443333333332
Q ss_pred HHHHHHhhhhhhhhcCCc---cCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHH-------HHHHHHHHH
Q 048743 153 IQLCDVFLHLSAEKSNGA---ELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAH-------SIIILAQIH 222 (653)
Q Consensus 153 ~~~~~~~~~~~~a~~~~~---~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-------t~~~ll~~~ 222 (653)
+...|+.-.+ .+-+.++..-....++|.+.|++.....++..|.+.|+--|.. +|..+++-+
T Consensus 168 --------d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 168 --------DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred --------CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHH
Confidence 2222222222 2345577888999999999999999999999999999754443 466777777
Q ss_pred HhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCC
Q 048743 223 EMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGS 302 (653)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (653)
...+..+...+.++...... ..+..+-.+++.-+.++|+.++|.++.++-.+
T Consensus 240 ~~~~~~~gL~~~W~~~pr~l----r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk------------------------ 291 (400)
T COG3071 240 RDDNGSEGLKTWWKNQPRKL----RNDPELVVAYAERLIRLGDHDEAQEIIEDALK------------------------ 291 (400)
T ss_pred hccccchHHHHHHHhccHHh----hcChhHHHHHHHHHHHcCChHHHHHHHHHHHH------------------------
Confidence 77777777777777765442 22223457888889999999999999988732
Q ss_pred CcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCccc
Q 048743 303 PNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTL 382 (653)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 382 (653)
....|+ -...-.+.+-++.+.-++..++-.+.. +.++-.
T Consensus 292 -----------------------------------~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h--~~~p~L 330 (400)
T COG3071 292 -----------------------------------RQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH--PEDPLL 330 (400)
T ss_pred -----------------------------------hccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC--CCChhH
Confidence 222233 233344566777777777777766666 566677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC
Q 048743 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN 449 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 449 (653)
+.+|-..|.+.+.+.+|...|+.-.+. .|+..+|+-+-+++.+.|++.+|.+.+++-...-.+|+
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999976664 68999999999999999999999999988775444443
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=6.3e-06 Score=80.11 Aligned_cols=219 Identities=9% Similarity=-0.018 Sum_probs=149.6
Q ss_pred hcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCC
Q 048743 224 MNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSP 303 (653)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (653)
-.|+.-.+.+-|+........+.. .|--+-.+|....+.++-+..|++...
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~----lyI~~a~~y~d~~~~~~~~~~F~~A~~------------------------- 388 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS----LYIKRAAAYADENQSEKMWKDFNKAED------------------------- 388 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch----HHHHHHHHHhhhhccHHHHHHHHHHHh-------------------------
Confidence 357777777777777665443333 266666777888888888888877621
Q ss_pred cccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCccc
Q 048743 304 NLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTL 382 (653)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 382 (653)
+.| ++.+|..--..+.-.+++++|..=|++..+-. |.+...
T Consensus 389 ------------------------------------ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--pe~~~~ 430 (606)
T KOG0547|consen 389 ------------------------------------LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--PENAYA 430 (606)
T ss_pred ------------------------------------cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--hhhhHH
Confidence 223 33356666666666788999999999998877 777778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCch------hhHHH
Q 048743 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS------CEMVV 456 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~~~~ 456 (653)
|-.+.-+..+.++++++...|++..++ ++-.+..|+.....+...+++++|.+.|+...+ +.|+.. ..++.
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhh
Confidence 888888888999999999999998875 677788999999999999999999999998876 455521 11111
Q ss_pred HhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 048743 457 SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526 (653)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 526 (653)
...+.-.. .+++..|..++.+..+.+ | ....|-+|-..-.+.|+.++|+++|++-.
T Consensus 508 Ka~l~~qw------------k~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 508 KALLVLQW------------KEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhHhhhch------------hhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11111100 255666666666555543 3 34455666666666666666666666544
No 57
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.00 E-value=5.1e-05 Score=76.62 Aligned_cols=327 Identities=12% Similarity=0.025 Sum_probs=156.2
Q ss_pred chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccH-HHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHH
Q 048743 176 DTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA-HSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYE 254 (653)
Q Consensus 176 ~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (653)
+...|......=-..|..+....+|++.... .|-. ..|.....-+-..|+...|..++...-+..+. +..+|-
T Consensus 549 k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn----seeiwl 622 (913)
T KOG0495|consen 549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN----SEEIWL 622 (913)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC----cHHHHH
Confidence 3344444444334455555555566555544 2222 22334444444556666666655555443221 122455
Q ss_pred HHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHH
Q 048743 255 SLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVL 334 (653)
Q Consensus 255 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (653)
+-+..-.....++.|..+|.+.
T Consensus 623 aavKle~en~e~eraR~llaka---------------------------------------------------------- 644 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKA---------------------------------------------------------- 644 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHH----------------------------------------------------------
Confidence 5555555666666666666554
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 048743 335 FRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMD 414 (653)
Q Consensus 335 ~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 414 (653)
....|+...|..-+..-.-.++.++|.+++++..+.- |.-...|-.+-..+-+.++++.|...|..-.+. ++-.
T Consensus 645 ---r~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ 718 (913)
T KOG0495|consen 645 ---RSISGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNS 718 (913)
T ss_pred ---hccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCC
Confidence 1134555555544444445555666666665555443 333334555555555555555555555443321 3333
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHcc
Q 048743 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEA 494 (653)
Q Consensus 415 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~ 494 (653)
+..|-.|...--+.|.+-.|..+|+.-+-.+ |+. ..+....+. +-.+.|+.+.|..++.+....-
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~--~~lwle~Ir-----------~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKN--ALLWLESIR-----------MELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCc--chhHHHHHH-----------HHHHcCCHHHHHHHHHHHHHhC
Confidence 3444444445555555666666665554432 332 111111111 1123566666655554443321
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc-C
Q 048743 495 ALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV-S 572 (653)
Q Consensus 495 ~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p-~ 572 (653)
| +-..|.--|....+.++-.+..+-+++ ++-|.+..-.+-..+-...+++.|.+.|.... .+.| +
T Consensus 784 --p~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Rav------k~d~d~ 850 (913)
T KOG0495|consen 784 --PSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAV------KKDPDN 850 (913)
T ss_pred --CccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH------ccCCcc
Confidence 2 334455555555555543333333332 22344444445555555555666666665443 2223 2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 573 RDLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 573 ~~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
..+|..+..-+.++|.-+.-.++++.-.
T Consensus 851 GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 2345555555556665555555555544
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=98.99 E-value=2.9e-07 Score=98.17 Aligned_cols=263 Identities=11% Similarity=-0.049 Sum_probs=181.6
Q ss_pred CHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH---------cCCHHHHHHHHHHHHH
Q 048743 343 SNRAMAKLINGYKK-----HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ---------LGFLEAAHDILDDMEL 408 (653)
Q Consensus 343 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~ 408 (653)
+...|...+.+-.. .+++++|..+|++..+.. |.+...|..+..+|.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44556566665322 244689999999999887 6666667666655442 2458899999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHH
Q 048743 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQ 488 (653)
Q Consensus 409 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 488 (653)
... -+...+..+-..+...|++++|...|++..+. .|+......... ..+...|+.++|...++
T Consensus 333 ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg-------------~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 333 LDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYG-------------WNLFMAGQLEEALQTIN 396 (553)
T ss_pred cCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH-------------HHHHHCCCHHHHHHHHH
Confidence 642 36778888888889999999999999999884 576522111111 11334899999999999
Q ss_pred HHHHccCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhh
Q 048743 489 EMREEAALST-IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT-VETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566 (653)
Q Consensus 489 ~m~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 566 (653)
+..+.+ |+ ...+..+...+...|++++|+..+++..... .|+ ...+..+..++...|+.++|...+..+.
T Consensus 397 ~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~----- 468 (553)
T PRK12370 397 ECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIS----- 468 (553)
T ss_pred HHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh-----
Confidence 998876 53 2233344555677899999999999987653 344 4446677778889999999999997764
Q ss_pred CCCccC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHhhhhhHHhhhhhHHHHHH
Q 048743 567 GVLAVS-RDLYETLLLNFLQGGYFERVMEVIGYMKKQ-NMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEA 635 (653)
Q Consensus 567 ~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ 635 (653)
...|+ ....+.+...|+..| ++|...++.+.+. +-.|....+..++...+|+-+.+... +.+.+.
T Consensus 469 -~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 469 -TQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred -hccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 22333 334555566677777 5888878777553 34455555566777888887777554 555543
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2.5e-05 Score=76.14 Aligned_cols=399 Identities=9% Similarity=-0.030 Sum_probs=222.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhh
Q 048743 182 LVLHACVRFGSSLKGQHIMELMSQTGVVAD-AHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLH 260 (653)
Q Consensus 182 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 260 (653)
..-+-|.++|.+++|++.|.+..+. .|| +.-|.....+|...|+++.+.+.-....+..+..+ -.+..--.++
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~----KAl~RRA~A~ 193 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYV----KALLRRASAH 193 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHH----HHHHHHHHHH
Confidence 4456688899999999999999875 688 56688899999999999999888777776553322 2456666777
Q ss_pred hccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCC
Q 048743 261 FKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKL 340 (653)
Q Consensus 261 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (653)
-..|++++|+.=+--.. +. .++..... ..+....+......... ....-...-+
T Consensus 194 E~lg~~~eal~D~tv~c----------------i~------~~F~n~s~-~~~~eR~Lkk~a~~ka~---e~~k~nr~p~ 247 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLC----------------IL------EGFQNASI-EPMAERVLKKQAMKKAK---EKLKENRPPV 247 (606)
T ss_pred HhhccHHHHHHhhhHHH----------------Hh------hhcccchh-HHHHHHHHHHHHHHHHH---HhhcccCCCC
Confidence 77788887754322220 00 00000000 00000000000000000 0000001112
Q ss_pred CCCHHHHH-----------------------HHHHHHHh--cC---ChHHHHHHHHHHHhcCCCCCCcc---------cH
Q 048743 341 LHSNRAMA-----------------------KLINGYKK--HG---KNSELSWLLLSIKKEHHSFGEST---------LC 383 (653)
Q Consensus 341 ~p~~~~~~-----------------------~li~~~~~--~~---~~~~a~~~~~~m~~~~~~~~~~~---------~~ 383 (653)
.|+....+ .+..++.. .+ .+.+|...+.+-.......++.. .-
T Consensus 248 lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~ 327 (606)
T KOG0547|consen 248 LPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAE 327 (606)
T ss_pred CCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHH
Confidence 23322222 22222211 11 23333333333211111111100 01
Q ss_pred HHHH--HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CccCchhhHHHHhhH
Q 048743 384 SDVI--DALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC-LVQNLSCEMVVSERF 460 (653)
Q Consensus 384 ~~li--~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~~~~~l 460 (653)
..++ ..+.-.|+.-.|..-|+..+.....++. .|--+-..|...++.++....|.+..+.. -.||.++.---..++
T Consensus 328 al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 328 ALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL 406 (606)
T ss_pred HHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH
Confidence 1112 2233357888888888888876433322 26666677888888889888888887632 123333222211111
Q ss_pred HHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 048743 461 SEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYY 539 (653)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 539 (653)
.++++.|..-|++..... | +++.|--+--+..+.+++++++..|++.+.+ ++-.+..|+.
T Consensus 407 ----------------L~q~e~A~aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~ 467 (606)
T KOG0547|consen 407 ----------------LQQYEEAIADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNL 467 (606)
T ss_pred ----------------HHHHHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHH
Confidence 457788888888877654 5 6666666666666888999999999998775 4445678888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHhhh-CCCccCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHH-
Q 048743 540 LVYGHSSLEMYRDITILWGDIKRNIES-GVLAVSRDL--YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEF- 615 (653)
Q Consensus 540 li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~p~~~~--y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~- 615 (653)
....+...++++.|.+.++...+.-.. .++..+... -..++..- =.+++..|++++.+..+..-+ ....|-++.
T Consensus 468 fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq 545 (606)
T KOG0547|consen 468 FAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQ 545 (606)
T ss_pred HHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHH
Confidence 889999999999999999887643111 111112211 12222222 237888888888888754422 244555555
Q ss_pred -HHhhhhhHHhhhhhHHHHH
Q 048743 616 -LKHHKHLYRRLKVSNARTE 634 (653)
Q Consensus 616 -~~~~~~~~~~~~~~~~~~~ 634 (653)
....+++++|.++++.-..
T Consensus 546 ~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 546 FELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 4456778888777776555
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.96 E-value=7.7e-05 Score=75.22 Aligned_cols=228 Identities=10% Similarity=0.023 Sum_probs=113.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHH
Q 048743 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~ 462 (653)
|...++---..|-++....+++++.+..+-......|- ..-+-.+..++++.+++++-...--.|.. .-+....+..
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny-AmfLEeh~yfeesFk~YErgI~LFk~p~v--~diW~tYLtk 556 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY-AMFLEEHKYFEESFKAYERGISLFKWPNV--YDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhHHHHHHHHHHHcCCccCCCccH--HHHHHHHHHH
Confidence 55555555556777777777777777655322222222 11233445567777776654432112222 1111111111
Q ss_pred HhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhcCCCCCH--HH
Q 048743 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFC----KGKMIGDALKIYRRMQEMKIRPTV--ET 536 (653)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~~--~t 536 (653)
..++. ..-.++.|..+|++..+ |++|... -++--.|+ +.|....|+.++++.. .++++.. ..
T Consensus 557 fi~ry--------gg~klEraRdLFEqaL~-~Cpp~~a--KtiyLlYA~lEEe~GLar~amsiyerat-~~v~~a~~l~m 624 (835)
T KOG2047|consen 557 FIKRY--------GGTKLERARDLFEQALD-GCPPEHA--KTIYLLYAKLEEEHGLARHAMSIYERAT-SAVKEAQRLDM 624 (835)
T ss_pred HHHHh--------cCCCHHHHHHHHHHHHh-cCCHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHH-hcCCHHHHHHH
Confidence 11100 13468889999998888 6655221 11222232 4678888888888854 3455543 35
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHH---HHHHHHHhCCCHHHHHHHHHHHHhC-CCCCCHHhHH
Q 048743 537 FYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYE---TLLLNFLQGGYFERVMEVIGYMKKQ-NMYVDKLMYK 612 (653)
Q Consensus 537 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~---~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~ 612 (653)
|++.|.--...=-+.....++++..+ .-|+...-. .+.+.=++.|..++|..++..--+- .-+.+..-|.
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe------~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~ 698 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIE------SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWD 698 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHH------hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHH
Confidence 77666533332223333444544431 223333222 2334445678888888887654321 1122333344
Q ss_pred HHH--HHhhhhhHHhhhhhHH
Q 048743 613 SEF--LKHHKHLYRRLKVSNA 631 (653)
Q Consensus 613 ~l~--~~~~~~~~~~~~~~~~ 631 (653)
+.- ...|||-+.-.++...
T Consensus 699 twk~FEvrHGnedT~keMLRi 719 (835)
T KOG2047|consen 699 TWKEFEVRHGNEDTYKEMLRI 719 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHH
Confidence 422 4456665444444433
No 61
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.9e-05 Score=76.37 Aligned_cols=268 Identities=11% Similarity=-0.012 Sum_probs=187.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCCcccHHHHHHHHHHcCCHH-HHHHHHHHHHHCCCCCCH
Q 048743 338 GKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHH-SFGESTLCSDVIDALIQLGFLE-AAHDILDDMELAGHPMDS 415 (653)
Q Consensus 338 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~g~~p~~ 415 (653)
.|+.-+...-+..-.+.-...++++|+.+|+++.+... ...|..+|+.++..--.+..+. .|..++.- ... -+
T Consensus 256 ~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i---dKy--R~ 330 (559)
T KOG1155|consen 256 VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI---DKY--RP 330 (559)
T ss_pred ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh---ccC--Cc
Confidence 33433333334444445578899999999999998873 4466777888776543332222 23333221 122 34
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccC
Q 048743 416 TTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAA 495 (653)
Q Consensus 416 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 495 (653)
.|..++.+-|.-.++.++|...|+...+. .|.. .......=+.+. ...+...|..-++...+-+
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~--~~aWTLmGHEyv-----------EmKNt~AAi~sYRrAvdi~- 394 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKY--LSAWTLMGHEYV-----------EMKNTHAAIESYRRAVDIN- 394 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhc--Ccch--hHHHHHhhHHHH-----------HhcccHHHHHHHHHHHhcC-
Confidence 56677777888889999999999999873 4543 122211223333 3788899999999888754
Q ss_pred CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCH
Q 048743 496 LS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP-TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR 573 (653)
Q Consensus 496 ~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~ 573 (653)
| |-..|-.|-++|.-.+.+.-|+-.|++.... +| |+..|.+|.++|.+.++.++|+..|..... .-..+.
T Consensus 395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~-----~~dte~ 466 (559)
T KOG1155|consen 395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL-----LGDTEG 466 (559)
T ss_pred -chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh-----ccccch
Confidence 6 8899999999999999999999999998774 45 688999999999999999999999976652 122356
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh----CCCCCCHHhHHHHH----HHhhhhhHHhhhhhHHHHH
Q 048743 574 DLYETLLLNFLQGGYFERVMEVIGYMKK----QNMYVDKLMYKSEF----LKHHKHLYRRLKVSNARTE 634 (653)
Q Consensus 574 ~~y~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~t~~~l~----~~~~~~~~~~~~~~~~~~~ 634 (653)
..|..+.+.|-+.++.++|.+.|+.-.+ .|..-|......++ ...+++.++|..-+.....
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 7899999999999999999888776544 45544433333333 4456788888775555554
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=98.90 E-value=1.5e-06 Score=92.80 Aligned_cols=218 Identities=9% Similarity=-0.068 Sum_probs=156.4
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 048743 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEA 436 (653)
Q Consensus 357 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 436 (653)
.+++++|...+++..+.+ |.+...+..+-..+...|++++|...|++..+.+ +.+...+..+...+...|++++|..
T Consensus 317 ~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 317 QNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred chHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345899999999999988 8888888899889999999999999999998864 3356778888899999999999999
Q ss_pred HHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCH
Q 048743 437 LLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMI 515 (653)
Q Consensus 437 ~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~ 515 (653)
.+++..+. .|+.......... . +...|+.++|...+++...... | +...+..+..+|...|+.
T Consensus 394 ~~~~Al~l--~P~~~~~~~~~~~--~-----------~~~~g~~eeA~~~~~~~l~~~~-p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 394 TINECLKL--DPTRAAAGITKLW--I-----------TYYHTGIDDAIRLGDELRSQHL-QDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred HHHHHHhc--CCCChhhHHHHHH--H-----------HHhccCHHHHHHHHHHHHHhcc-ccCHHHHHHHHHHHHhCCCH
Confidence 99999874 4654211111100 1 1226889999999999876542 4 455577788888999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHH
Q 048743 516 GDALKIYRRMQEMKIRPTVET-FYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVME 594 (653)
Q Consensus 516 ~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~ 594 (653)
++|...+.++... .|+..+ .+.+...++..| +.|...++.+.+..... +...-+ +-..+.-.|+.+.+..
T Consensus 458 ~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~---~~~~~~--~~~~~~~~g~~~~~~~ 528 (553)
T PRK12370 458 ELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI---DNNPGL--LPLVLVAHGEAIAEKM 528 (553)
T ss_pred HHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh---hcCchH--HHHHHHHHhhhHHHHH
Confidence 9999999987654 455444 344555667777 58888888776543322 222222 3334455677666665
Q ss_pred HHHHHHhCC
Q 048743 595 VIGYMKKQN 603 (653)
Q Consensus 595 ~~~~m~~~g 603 (653)
+ +++.+.|
T Consensus 529 ~-~~~~~~~ 536 (553)
T PRK12370 529 W-NKFKNED 536 (553)
T ss_pred H-HHhhccc
Confidence 5 8887664
No 63
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=0.00013 Score=71.02 Aligned_cols=466 Identities=10% Similarity=0.048 Sum_probs=273.9
Q ss_pred hccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCc
Q 048743 31 KNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPV 110 (653)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~ 110 (653)
.++++..|..+|+..... ...+...|--.+..=.+... +..|..++.+....-|- .|. .|-..+..=-..|++.
T Consensus 85 sq~e~~RARSv~ERALdv-d~r~itLWlkYae~Emknk~---vNhARNv~dRAvt~lPR-Vdq-lWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDV-DYRNITLWLKYAEFEMKNKQ---VNHARNVWDRAVTILPR-VDQ-LWYKYIYMEEMLGNIA 158 (677)
T ss_pred hHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHhhhh---HhHHHHHHHHHHHhcch-HHH-HHHHHHHHHHHhcccH
Confidence 456778888999988773 24455556555555444444 77888888877554322 122 2333344445578899
Q ss_pred hHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCcc--CCCCchhhHHHHHHHHH
Q 048743 111 PASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAE--LIKPDTMIFNLVLHACV 188 (653)
Q Consensus 111 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~yn~li~~~~ 188 (653)
-|.++|++-.+. .|+.-.|.+. ++...++..++.|+.++++ ..+|++.+|---.+-=-
T Consensus 159 gaRqiferW~~w--~P~eqaW~sf------------------I~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~ 218 (677)
T KOG1915|consen 159 GARQIFERWMEW--EPDEQAWLSF------------------IKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEE 218 (677)
T ss_pred HHHHHHHHHHcC--CCcHHHHHHH------------------HHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHH
Confidence 999999888775 7888887766 4445556677888888774 45788888877777777
Q ss_pred hcCChhhHHHHHHHHHhcCCCccHHH----HHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccC
Q 048743 189 RFGSSLKGQHIMELMSQTGVVADAHS----IIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFD 264 (653)
Q Consensus 189 ~~g~~~~a~~l~~~m~~~g~~p~~~t----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 264 (653)
++|+...|..+|+...+. ..|... |.+...--.++...+.|.-+++.....-+.+-. ...|..+...=-+-|
T Consensus 219 k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra--eeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 219 KHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA--EELYKKYTAFEKQFG 294 (677)
T ss_pred hcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHHhc
Confidence 888888888888887754 223332 333333333566677777777766554322111 112333332222233
Q ss_pred CH---HHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhh-hccchhhhHHHHHHhhhhhHHHHHHhcCCC
Q 048743 265 DI---DAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLK-LQIMPELLEKDSILKMEGKQELVLFRNGKL 340 (653)
Q Consensus 265 ~~---~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (653)
|. +++.--=.++ .+...+.........-.. +.+....-..+.+-.. ..-.-.++
T Consensus 295 d~~gIEd~Iv~KRk~----------------qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~------yErAIanv 352 (677)
T KOG1915|consen 295 DKEGIEDAIVGKRKF----------------QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRET------YERAIANV 352 (677)
T ss_pred chhhhHHHHhhhhhh----------------HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHH------HHHHHccC
Confidence 33 3332222222 000001000000000000 0000000000000000 01112345
Q ss_pred CCCH-------HHH---HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHH----HHHHHcCCHHHHHHHHHHH
Q 048743 341 LHSN-------RAM---AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVI----DALIQLGFLEAAHDILDDM 406 (653)
Q Consensus 341 ~p~~-------~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li----~~~~~~g~~~~a~~~~~~m 406 (653)
+|-. .+| |..+-.=....+.+.+.++|+.... .+|....|+.-+= ..-.++.++..|.+++...
T Consensus 353 pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 353 PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5533 122 1122222357889999999999887 3566666665553 3444678899999999876
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHH
Q 048743 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL 486 (653)
Q Consensus 407 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~ 486 (653)
. |..|-..+|...|..-.+.+++|.+..+++....- .|.....-+-.+-+ -...|+.+.|..+
T Consensus 431 I--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaEl-------------E~~LgdtdRaRai 493 (677)
T KOG1915|consen 431 I--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAEL-------------ETSLGDTDRARAI 493 (677)
T ss_pred h--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHH-------------HHHhhhHHHHHHH
Confidence 5 67899999999999999999999999999999874 46542211111111 1247999999999
Q ss_pred HHHHHHcc-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH--H-Hh--ccC-----------C
Q 048743 487 IQEMREEA-ALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY--G-HS--SLE-----------M 549 (653)
Q Consensus 487 ~~~m~~~~-~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~--~-~~--~~~-----------~ 549 (653)
|.-..... ..-....|-+.|+.=...|.+++|..+++.+.+..- -...|..+.. + .. ..+ .
T Consensus 494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~--h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~ 571 (677)
T KOG1915|consen 494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ--HVKVWISFAKFEASASEGQEDEDLAELEITDEN 571 (677)
T ss_pred HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc--cchHHHhHHHHhccccccccccchhhhhcchhH
Confidence 98777543 222667888999988899999999999999997522 2223333322 1 11 222 4
Q ss_pred HHHHHHHHHHHHHHhhhCCC
Q 048743 550 YRDITILWGDIKRNIESGVL 569 (653)
Q Consensus 550 ~~~a~~~~~~~~~~~~~~~~ 569 (653)
+..|..+|+.....+++.+-
T Consensus 572 ~~~AR~iferAn~~~k~~~~ 591 (677)
T KOG1915|consen 572 IKRARKIFERANTYLKESTP 591 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCc
Confidence 55778888877666555543
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.84 E-value=5.3e-06 Score=84.49 Aligned_cols=244 Identities=16% Similarity=0.118 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCCcc-cHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CC
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKE-----HHSFGEST-LCSDVIDALIQLGFLEAAHDILDDMELA-----G-HP 412 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~ 412 (653)
.+...+...|...|++++|+.+++...+. |...+... ..+.+-..|...+++++|..+|+++..- | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46667999999999999999999986654 20111111 1344566788889999999999998542 2 12
Q ss_pred CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHH
Q 048743 413 MD-STTYKSLLTAYYKVKMFREAEALLKQMRKS-----CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL 486 (653)
Q Consensus 413 p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~ 486 (653)
|. ..+++.|-.+|.+.|++++|...++...+- |..+.. ....+..... .+...++.++|..+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~-v~~~l~~~~~-----------~~~~~~~~Eea~~l 347 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE-VAAQLSELAA-----------ILQSMNEYEEAKKL 347 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH-HHHHHHHHHH-----------HHHHhcchhHHHHH
Confidence 22 347788888999999999999988776541 111111 1111111111 13357899999888
Q ss_pred HHHHHHc---cCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc------CCCCC-HHHHHHHHHHHhccCCHHH
Q 048743 487 IQEMREE---AALS----TIYKLNSSIYFFCKGKMIGDALKIYRRMQEM------KIRPT-VETFYYLVYGHSSLEMYRD 552 (653)
Q Consensus 487 ~~~m~~~---~~~p----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~t~~~li~~~~~~~~~~~ 552 (653)
++...+. -..+ ...+|+.|-..|.+.|++++|.+++++.+.. +..+. ...++.|-..|.+.+++++
T Consensus 348 ~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 348 LQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 8755431 1112 3467999999999999999999999988752 12233 4567888889999999999
Q ss_pred HHHHHHHHHHHhhhCCCc--cCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 553 ITILWGDIKRNIESGVLA--VSRDLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 553 a~~~~~~~~~~~~~~~~~--p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
|.++|.+...-++..|.. -...+|..|...|.+.|+++.|+++.+...
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999876554444432 234578899999999999999999987664
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.82 E-value=1.4e-06 Score=88.62 Aligned_cols=250 Identities=13% Similarity=0.070 Sum_probs=180.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhc-----C-CCccHHHH-HHHHHHHHhcCChhhhHHHHHHhhhcCC----Ccc
Q 048743 178 MIFNLVLHACVRFGSSLKGQHIMELMSQT-----G-VVADAHSI-IILAQIHEMNCQRDELKKFKCYIDQLST----PFA 246 (653)
Q Consensus 178 ~~yn~li~~~~~~g~~~~a~~l~~~m~~~-----g-~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~ 246 (653)
.+...|...|...|+++.|..+++...+. | ..|...+. +.+...|...+++++|..+|+.+..... +.-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555999999999999999999998764 2 25666664 4578889999999999999988876522 333
Q ss_pred cchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhh
Q 048743 247 HHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKM 326 (653)
Q Consensus 247 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (653)
+....+++.|-.+|.+.|++++|...+++.++....
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~-------------------------------------------- 315 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK-------------------------------------------- 315 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH--------------------------------------------
Confidence 444568899999999999999999999887431100
Q ss_pred hhhHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCC---CCCC---cccHHHHHHHHHHcCCHHHH
Q 048743 327 EGKQELVLFRNGKLLHSNR-AMAKLINGYKKHGKNSELSWLLLSIKKEHH---SFGE---STLCSDVIDALIQLGFLEAA 399 (653)
Q Consensus 327 ~~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~---~~~~~~li~~~~~~g~~~~a 399 (653)
......|... .++.+...|+..+++++|..+++...+.-. -+.+ ..+|+.|-..|-+.|++.+|
T Consensus 316 ---------~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea 386 (508)
T KOG1840|consen 316 ---------LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEA 386 (508)
T ss_pred ---------hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHH
Confidence 0111223333 457788888899999999999886443211 1122 33588899999999999999
Q ss_pred HHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CccCchhhHHHHhhHHHHhhhcccc
Q 048743 400 HDILDDMELA------GHPM-DSTTYKSLLTAYYKVKMFREAEALLKQMRKSC--LVQNLSCEMVVSERFSEVADKSASF 470 (653)
Q Consensus 400 ~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~~~~~l~~~~~~~~~~ 470 (653)
.++|++.... +..+ ....++.|-.+|.+.+++.+|.++|.+-..-. +.|+.
T Consensus 387 ~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~-------------------- 446 (508)
T KOG1840|consen 387 EELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH-------------------- 446 (508)
T ss_pred HHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC--------------------
Confidence 9999887432 1122 24577888888888888998988887765421 11221
Q ss_pred cccccccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 048743 471 TDTSSLMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526 (653)
Q Consensus 471 ~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 526 (653)
| ...+|..|...|.+.|++++|+++.+...
T Consensus 447 --------------------------~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 447 --------------------------PDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred --------------------------CchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 45679999999999999999999887766
No 66
>PF12854 PPR_1: PPR repeat
Probab=98.81 E-value=5.5e-09 Score=63.35 Aligned_cols=33 Identities=18% Similarity=0.432 Sum_probs=24.6
Q ss_pred cCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 048743 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526 (653)
Q Consensus 494 ~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 526 (653)
|+.||..+||+||.+||+.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777763
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=6.5e-07 Score=82.23 Aligned_cols=229 Identities=10% Similarity=-0.017 Sum_probs=175.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 048743 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTY-KSLLTAYY 426 (653)
Q Consensus 348 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~ 426 (653)
+.+-++|.+.|.+.+|.+.|+.-.... +.+.||-.|-++|.+..++..|+.++.+-.+. .|-.+|| .-+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~---~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC---CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 467788889999999999888876654 44556888999999999999999999888775 3555555 45667788
Q ss_pred HcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 048743 427 KVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506 (653)
Q Consensus 427 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li 506 (653)
..++.++|.++++...+. .|... -..+|+ ...|.-.++++.|+..++++..-|+ -+...|+.+-
T Consensus 302 am~~~~~a~~lYk~vlk~--~~~nv---EaiAci----------a~~yfY~~~PE~AlryYRRiLqmG~-~speLf~Nig 365 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKL--HPINV---EAIACI----------AVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIG 365 (478)
T ss_pred HHHhHHHHHHHHHHHHhc--CCccc---eeeeee----------eeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHH
Confidence 889999999999988773 23220 001111 1224457889999999999998887 3677889999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHH
Q 048743 507 YFFCKGKMIGDALKIYRRMQEMKIRPTV--ETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584 (653)
Q Consensus 507 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~ 584 (653)
-+|.-.+++|-++.-|++....--.|+. ..|-.|-......|++..|.+.|+.... .-.-....+|.|...-.
T Consensus 366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~-----~d~~h~ealnNLavL~~ 440 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT-----SDAQHGEALNNLAVLAA 440 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc-----cCcchHHHHHhHHHHHh
Confidence 9999999999999999998876555664 3577777788889999999999987652 12335567888888888
Q ss_pred hCCCHHHHHHHHHHHHhC
Q 048743 585 QGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 585 ~~g~~~~a~~~~~~m~~~ 602 (653)
+.|+++.|..+++.....
T Consensus 441 r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 441 RSGDILGARSLLNAAKSV 458 (478)
T ss_pred hcCchHHHHHHHHHhhhh
Confidence 999999999999988743
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.78 E-value=2e-05 Score=81.44 Aligned_cols=265 Identities=13% Similarity=0.087 Sum_probs=177.1
Q ss_pred CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCC
Q 048743 341 LHSNRA-MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG-----FLEAAHDILDDMELAGHPMD 414 (653)
Q Consensus 341 ~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~ 414 (653)
.+|... ....-..+.+.|+.++|..++..+...+ |.+..-|..+..+..-.. +.+....+++++...- |.
T Consensus 34 I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~ 109 (517)
T PF12569_consen 34 ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PR 109 (517)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--cc
Confidence 345443 4567778889999999999999999999 888776777777774333 5778889999887653 43
Q ss_pred HHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHc
Q 048743 415 STTYKSLLTAYYKVKMF-REAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE 493 (653)
Q Consensus 415 ~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 493 (653)
......+.-.+.....+ ..+..++..+...|+++ ....+ ..+ |....+......++......
T Consensus 110 s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs-lF~~l------k~L----------y~d~~K~~~i~~l~~~~~~~ 172 (517)
T PF12569_consen 110 SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS-LFSNL------KPL----------YKDPEKAAIIESLVEEYVNS 172 (517)
T ss_pred ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch-HHHHH------HHH----------HcChhHHHHHHHHHHHHHHh
Confidence 33333333223322233 24555667777777643 21111 111 22233444455555544321
Q ss_pred ----c----------CCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 048743 494 ----A----------ALSTIY--KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT-VETFYYLVYGHSSLEMYRDITIL 556 (653)
Q Consensus 494 ----~----------~~p~~~--~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~ 556 (653)
+ -.|+.. ++.-+...|...|++++|++++++.++. .|+ +..|..-.+.+-+.|++.+|.+.
T Consensus 173 l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~ 250 (517)
T PF12569_consen 173 LESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEA 250 (517)
T ss_pred hcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1 124443 4455677888999999999999998886 566 55677888889999999999999
Q ss_pred HHHHHHHhhhCCCcc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHH--HHH--------HHhhhhhHHh
Q 048743 557 WGDIKRNIESGVLAV-SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK--SEF--------LKHHKHLYRR 625 (653)
Q Consensus 557 ~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~l~--------~~~~~~~~~~ 625 (653)
.+..+ .+.+ |...-+-.+..+.|+|++++|.+++......+..|-...+. .++ +...|+...|
T Consensus 251 ~~~Ar------~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 251 MDEAR------ELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHH------hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 98886 3333 56666677888999999999999999998777644332221 122 3345778888
Q ss_pred hhhhHHHHH
Q 048743 626 LKVSNARTE 634 (653)
Q Consensus 626 ~~~~~~~~~ 634 (653)
.+.+..+.+
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 887777776
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=8e-07 Score=81.65 Aligned_cols=230 Identities=8% Similarity=-0.095 Sum_probs=169.8
Q ss_pred HHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhccccc
Q 048743 216 IILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKP 295 (653)
Q Consensus 216 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 295 (653)
.-+.++|.+.|.+.+|.+.++...+... ...+|-.|-.+|.+.++++.|+.+|.+-.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-----~~dTfllLskvY~ridQP~~AL~~~~~gld----------------- 284 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-----HPDTFLLLSKVYQRIDQPERALLVIGEGLD----------------- 284 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-----chhHHHHHHHHHHHhccHHHHHHHHhhhhh-----------------
Confidence 4688889999999999988877665431 112688888999999999999998877622
Q ss_pred chhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048743 296 YLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAM-AKLINGYKKHGKNSELSWLLLSIKKEH 374 (653)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~ 374 (653)
..|-.+|| .-.-..+-..++.++|.++++...+..
T Consensus 285 --------------------------------------------~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~ 320 (478)
T KOG1129|consen 285 --------------------------------------------SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH 320 (478)
T ss_pred --------------------------------------------cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 33555555 345556667788999999999998887
Q ss_pred CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhH
Q 048743 375 HSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEM 454 (653)
Q Consensus 375 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 454 (653)
+.++.....+...|.-.++++.|+..++++.+.|+. ++..|+.+--+|.-.+++|-++.-|++....--.|+....+
T Consensus 321 --~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDv 397 (478)
T KOG1129|consen 321 --PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADV 397 (478)
T ss_pred --CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhh
Confidence 777777888888899999999999999999999986 78888888888888899999988888776643334431111
Q ss_pred HHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 048743 455 VVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527 (653)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 527 (653)
-+..- ......|++..|.+.|+-....+- -+...+|.|.-.-.+.|++++|..+++....
T Consensus 398 WYNlg------------~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 398 WYNLG------------FVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hhccc------------eeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 11000 001136888888888887766542 2566788887777888888888888887655
No 70
>PF12854 PPR_1: PPR repeat
Probab=98.77 E-value=7.8e-09 Score=62.69 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=29.9
Q ss_pred cCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048743 171 ELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMS 204 (653)
Q Consensus 171 ~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~ 204 (653)
+|..||.++||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678999999999999999999999999999884
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=0.00019 Score=67.18 Aligned_cols=214 Identities=13% Similarity=0.099 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhccccccccc
Q 048743 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSS 475 (653)
Q Consensus 396 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 475 (653)
-+.|++++-.+.+. -| ..--.|+--|.+.+++.+|..+.+++ .|......++...+..... +-.+
T Consensus 270 gEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl-----~PttP~EyilKgvv~aalG------Qe~g 334 (557)
T KOG3785|consen 270 GEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDL-----DPTTPYEYILKGVVFAALG------QETG 334 (557)
T ss_pred CccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhc-----CCCChHHHHHHHHHHHHhh------hhcC
Confidence 35566666555442 11 12223344456667777666655433 3444333333222221111 0011
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 048743 476 LMDKSDLAESLIQEMREEAALSTI-YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDIT 554 (653)
Q Consensus 476 ~~~~~~~a~~~~~~m~~~~~~p~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~ 554 (653)
+...+..|.+.|+-..+.+..-|+ .---++..++.-..++++++-.++.....-..-|...| .+.++.+..|.+.+|+
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAE 413 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHH
Confidence 223344455555555544433221 12334444444555566666666655544222233222 3456666666666666
Q ss_pred HHHHHHHHHhhhCCCccCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHH---HHhhhhhHHhhhhhH
Q 048743 555 ILWGDIKRNIESGVLAVSRDLYET-LLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEF---LKHHKHLYRRLKVSN 630 (653)
Q Consensus 555 ~~~~~~~~~~~~~~~~p~~~~y~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~---~~~~~~~~~~~~~~~ 630 (653)
++|-.+. ...+ -|..+|.+ +.++|.+.++++-|.+++-.+ ..+-+..+..-+| |-..+.+.-+.++++
T Consensus 414 elf~~is----~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd 485 (557)
T KOG3785|consen 414 ELFIRIS----GPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFD 485 (557)
T ss_pred HHHhhhc----Chhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6663331 1111 23444443 344566666666554443332 3333344444444 445555555555554
Q ss_pred HHH
Q 048743 631 ART 633 (653)
Q Consensus 631 ~~~ 633 (653)
.+.
T Consensus 486 ~lE 488 (557)
T KOG3785|consen 486 ELE 488 (557)
T ss_pred HHH
Confidence 443
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=0.00037 Score=66.76 Aligned_cols=288 Identities=11% Similarity=-0.038 Sum_probs=179.9
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCC
Q 048743 187 CVRFGSSLKGQHIMELMSQTGVVADAHS-IIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDD 265 (653)
Q Consensus 187 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 265 (653)
.+..++...|...+-.......-||.+. ...+.+++...|+.+.+...|+......+ ......-.|..|+ .+.|+
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~MD~Ya~LL---~~eg~ 281 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEAMDLYAVLL---GQEGG 281 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhhHHHHHHHH---HhccC
Confidence 3345555555555555554444454443 56777777788888888777777655432 2221222344443 45677
Q ss_pred HHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHH
Q 048743 266 IDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNR 345 (653)
Q Consensus 266 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 345 (653)
.+....+...+... ..-+..
T Consensus 282 ~e~~~~L~~~Lf~~------------------------------------------------------------~~~ta~ 301 (564)
T KOG1174|consen 282 CEQDSALMDYLFAK------------------------------------------------------------VKYTAS 301 (564)
T ss_pred HhhHHHHHHHHHhh------------------------------------------------------------hhcchh
Confidence 77666666665210 001122
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY 425 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (653)
.|..-.......++++.|+.+-++..+.. +.+...|-.--..+...|++++|.-.|+...... +-+...|.-|+..|
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSY 378 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHH
Confidence 23333344456788999999999888766 5555545555567778899999999999876542 23678999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCccCc--hhhHHH-HhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHH
Q 048743 426 YKVKMFREAEALLKQMRKSCLVQNL--SCEMVV-SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYK 501 (653)
Q Consensus 426 ~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~ 501 (653)
...|++.+|...-+...+. -|.. +.+++. ..| +-....-++|..++++-.... | -+..
T Consensus 379 LA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~--------------~~dp~~rEKAKkf~ek~L~~~--P~Y~~A 440 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVL--------------FPDPRMREKAKKFAEKSLKIN--PIYTPA 440 (564)
T ss_pred HhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceee--------------ccCchhHHHHHHHHHhhhccC--CccHHH
Confidence 9999999998776655442 2322 222221 111 001233466777776655433 4 2334
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 502 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
-+.+...+...|..+.++.+++.-.. ..||....+.|-+.+...+.+.+|...|....
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 56666777778888888888887655 36787777888888888888888887776654
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.00046 Score=69.22 Aligned_cols=372 Identities=12% Similarity=-0.001 Sum_probs=195.5
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCcc
Q 048743 92 QLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAE 171 (653)
Q Consensus 92 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 171 (653)
|..+...-.+.+-|.|++++|+.+|+.+.+.+.. + +..-+.+-+ +.......++ +.+.
T Consensus 109 ~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl------------~a~~a~l~~~------~~q~ 166 (652)
T KOG2376|consen 109 DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANL------------LAVAAALQVQ------LLQS 166 (652)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHH------------HHHHHhhhHH------HHHh
Confidence 3345556667788899999999999999776421 2 222111100 0000000000 0111
Q ss_pred CCCCchhhHHHHHH---HHHhcCChhhHHHHHHHHHhcC-------------CCccHHHH-HHHHHHHHhcCChhhhHHH
Q 048743 172 LIKPDTMIFNLVLH---ACVRFGSSLKGQHIMELMSQTG-------------VVADAHSI-IILAQIHEMNCQRDELKKF 234 (653)
Q Consensus 172 ~~~~~~~~yn~li~---~~~~~g~~~~a~~l~~~m~~~g-------------~~p~~~t~-~~ll~~~~~~g~~~~a~~~ 234 (653)
.+.....+|..+-+ .+...|++.+|+++++...+-+ +.-+..+. .-+.-.+...|+-+++.++
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 11112335554443 4566899999999999883221 11111221 1234445567888888888
Q ss_pred HHHhhhcCCCcccchhHHHHHHHHhhhccCCHH-HHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhcc
Q 048743 235 KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDID-AAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQI 313 (653)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (653)
+..+.+...++...-...-|.|+.+-....-++ .++..++.... .
T Consensus 247 y~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~----------------------------------~ 292 (652)
T KOG2376|consen 247 YVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVF----------------------------------K 292 (652)
T ss_pred HHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHH----------------------------------H
Confidence 888877776666555555566655543333333 22222222200 0
Q ss_pred chhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 048743 314 MPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMA-KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ 392 (653)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 392 (653)
.++.. ...... -.-.....| .++..|.. ..+.+.++-...... .|. +.+.+++..+.+
T Consensus 293 l~~~~-----l~~Ls~----------~qk~~i~~N~~lL~l~tn--k~~q~r~~~a~lp~~---~p~-~~~~~ll~~~t~ 351 (652)
T KOG2376|consen 293 LAEFL-----LSKLSK----------KQKQAIYRNNALLALFTN--KMDQVRELSASLPGM---SPE-SLFPILLQEATK 351 (652)
T ss_pred hHHHH-----HHHHHH----------HHHHHHHHHHHHHHHHhh--hHHHHHHHHHhCCcc---Cch-HHHHHHHHHHHH
Confidence 00000 000000 000111122 33333332 234444444433322 233 336777766665
Q ss_pred cC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH--------HHHHcCCccCchhhHHHHhhHHH
Q 048743 393 LG--FLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK--------QMRKSCLVQNLSCEMVVSERFSE 462 (653)
Q Consensus 393 ~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~~~~~~l~~ 462 (653)
.. ....+.+++...-+....-.....-.++......|+++.|.+++. .+.+.+..|....+++.
T Consensus 352 ~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~------ 425 (652)
T KOG2376|consen 352 VREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVA------ 425 (652)
T ss_pred HHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHH------
Confidence 42 356677777777665333335566677888889999999999998 55555555543222211
Q ss_pred HhhhcccccccccccCCHHHHHHHHHHHHHc--cCCCCHHHHHHHHH----HHHcCCCHHHHHHHHHHHHhcCCCCCHHH
Q 048743 463 VADKSASFTDTSSLMDKSDLAESLIQEMREE--AALSTIYKLNSSIY----FFCKGKMIGDALKIYRRMQEMKIRPTVET 536 (653)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~y~~li~----~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 536 (653)
+|.+.++.+.|-.++++.... .-.+.....++++. .-.++|+-++|..+++++.+. .++|..+
T Consensus 426 ----------l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~ 494 (652)
T KOG2376|consen 426 ----------LYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDL 494 (652)
T ss_pred ----------HHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHH
Confidence 233456666666666554421 00112223333333 334678999999999998875 3668888
Q ss_pred HHHHHHHHhccCCHHHHHHHHH
Q 048743 537 FYYLVYGHSSLEMYRDITILWG 558 (653)
Q Consensus 537 ~~~li~~~~~~~~~~~a~~~~~ 558 (653)
...++.+|++. +++.|..+-.
T Consensus 495 l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 495 LVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHhc-CHHHHHHHhh
Confidence 88888888876 4566665543
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.65 E-value=0.00092 Score=69.33 Aligned_cols=241 Identities=10% Similarity=-0.014 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHH
Q 048743 18 SREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLA 97 (653)
Q Consensus 18 ~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~ 97 (653)
++.+|..+.-++.+.|++..+.+.|++... ..+.....|..+-..+.-+|. -..|+.+++.-....+..+|...+-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~-~~~~~~e~w~~~als~saag~---~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALP-FSFGEHERWYQLALSYSAAGS---DSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhhhhHHHHHHHHHHHHHhcc---chHHHHHHHhhcccccCCCcchHHH
Confidence 456777777777788888888888887655 233444566666666655665 3577777766544443233455555
Q ss_pred HHHHHHHh-cCCCchHHHHHHHHHcC--c----cCCCchhHHHHHHHH-hhcccccccchHHHHHHHHHh--hhhhhhhc
Q 048743 98 KLSLSLAR-AQMPVPASMILRLMLGR--E----NLPCSDLLLLVFVHM-VKTEIGTCLASNFLIQLCDVF--LHLSAEKS 167 (653)
Q Consensus 98 ~li~~~~~-~g~~~~a~~~~~~m~~~--g----~~p~~~~~~~li~~~-~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~ 167 (653)
..-..|.+ -+.+++++..-.+..+. | +.|-...+.-+--.. .+.. . ....-+.+.+. ..++++.+
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a-~----~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQA-N----LKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcC-C----ChHHHHHHHHHHHHHHHHHHh
Confidence 44444444 35556666555555441 1 112111111110000 0000 0 00111111110 02233322
Q ss_pred CCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhc-CCCcc
Q 048743 168 NGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQL-STPFA 246 (653)
Q Consensus 168 ~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~ 246 (653)
. .+-.|++.-|-++ -|+..++++.|.+..++..+-+-.-+...|..+.-.+...+++.+|..+.+..... +....
T Consensus 473 ~--d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 473 F--DPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred c--CCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 1 2334555555333 46677889999999888888755667777888888888888888888876655432 21111
Q ss_pred cchhHHHHHHHHhhhccCCHHHHHHHHHHh
Q 048743 247 HHYQQFYESLLSLHFKFDDIDAAGELILDM 276 (653)
Q Consensus 247 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 276 (653)
-. ..-++.=..-+|.++|......+
T Consensus 549 l~-----~~~~~i~~~~~~~e~~l~t~~~~ 573 (799)
T KOG4162|consen 549 LM-----DGKIHIELTFNDREEALDTCIHK 573 (799)
T ss_pred hc-----hhhhhhhhhcccHHHHHHHHHHH
Confidence 00 01111122357777777766665
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.65 E-value=5.2e-05 Score=78.35 Aligned_cols=238 Identities=9% Similarity=0.020 Sum_probs=147.8
Q ss_pred CCCCHHHHHHHHHHHH------hcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCC
Q 048743 340 LLHSNRAMAKLINGYK------KHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL-EAAHDILDDMELAGHP 412 (653)
Q Consensus 340 ~~p~~~~~~~li~~~~------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~ 412 (653)
..|+...|...+..+. ...+.+....+++++.... |.... ...+.-.+.....+ ..+...+..+...|++
T Consensus 67 rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~-~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP 143 (517)
T PF12569_consen 67 RNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDA-PRRLPLDFLEGDEFKERLDEYLRPQLRKGVP 143 (517)
T ss_pred HCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccc-hhHhhcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 3466666644444443 1235677788888887665 32222 22222222222223 3466677777888875
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCc-------cCchhhHHHHhhHHHHhhhcccccccccccCCHH
Q 048743 413 MDSTTYKSLLTAYYKVKMFREAEALLKQMRKS----CLV-------QNLSCEMVVSERFSEVADKSASFTDTSSLMDKSD 481 (653)
Q Consensus 413 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-------p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 481 (653)
+ +|+.|-..|....+.+-..+++...... +-. .....+.+....+.+ ..|...|+.+
T Consensus 144 s---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lA---------qhyd~~g~~~ 211 (517)
T PF12569_consen 144 S---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLA---------QHYDYLGDYE 211 (517)
T ss_pred h---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHH---------HHHHHhCCHH
Confidence 3 4555555666555566666666665542 111 111122222222222 2355689999
Q ss_pred HHHHHHHHHHHccCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048743 482 LAESLIQEMREEAALST-IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560 (653)
Q Consensus 482 ~a~~~~~~m~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 560 (653)
+|...+++..+.. |+ +..|..-.+.|-+.|++.+|.+.++..+..... |...-+-....+.++|++++|.+++...
T Consensus 212 ~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 212 KALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 9999999888765 64 667888888999999999999999998876433 6666677788889999999999999777
Q ss_pred HHHhhhCCCcc--CHH----HH--HHHHHHHHhCCCHHHHHHHHHHH
Q 048743 561 KRNIESGVLAV--SRD----LY--ETLLLNFLQGGYFERVMEVIGYM 599 (653)
Q Consensus 561 ~~~~~~~~~~p--~~~----~y--~~li~~~~~~g~~~~a~~~~~~m 599 (653)
.+. +..| |.. +| .....+|.+.|++..|++-|...
T Consensus 289 tr~----~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 289 TRE----DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred cCC----CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 522 2223 222 12 23456788999988877665544
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.63 E-value=0.0002 Score=72.51 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=37.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhh---CCCccCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHhC
Q 048743 539 YLVYGHSSLEMYRDITILWGDIKRNIES---GVLAVSRDLYETLLL--NFLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 539 ~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~p~~~~y~~li~--~~~~~g~~~~a~~~~~~m~~~ 602 (653)
....++...|+.+.|..+++.+....+. .+... ..+-..++. ++...|++++|.+++.+....
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPA-RDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhH-HhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566677788888888888777654333 11111 111122333 345788888888888776543
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.59 E-value=0.00044 Score=69.96 Aligned_cols=310 Identities=7% Similarity=-0.078 Sum_probs=179.0
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCccHHHH-HHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHH
Q 048743 177 TMIFNLVLHACVRFGSSLKGQHIMELMSQTG-VVADAHSI-IILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYE 254 (653)
Q Consensus 177 ~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (653)
...|..+...+...|+.+.+.+-+....+.. ..++.... ......+...|+.+++.++++......+.+. ..++
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~----~a~~ 81 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL----LALK 81 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHH
Confidence 3456666666667777877766666655432 12232222 2223344567888888888887766532221 1222
Q ss_pred H---HHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHH
Q 048743 255 S---LLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQE 331 (653)
Q Consensus 255 ~---li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (653)
. +.......+..+.+.+.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~------------------------------------------------------- 106 (355)
T cd05804 82 LHLGAFGLGDFSGMRDHVARVLPLW------------------------------------------------------- 106 (355)
T ss_pred HhHHHHHhcccccCchhHHHHHhcc-------------------------------------------------------
Confidence 1 111112233444443333221
Q ss_pred HHHHhcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048743 332 LVLFRNGKLLHSN-RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG 410 (653)
Q Consensus 332 ~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 410 (653)
....|+. .....+...+...|++++|...+++..+.. |.+...+..+...+...|++++|...+++..+..
T Consensus 107 ------~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 107 ------APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred ------CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence 1122333 344556677889999999999999999887 7777778899999999999999999999987643
Q ss_pred C-CCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHH-
Q 048743 411 H-PMDS--TTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL- 486 (653)
Q Consensus 411 ~-~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~- 486 (653)
. .|+. ..|..+...+...|++++|..++++.......+...........+..... ..|..+.+.+.
T Consensus 179 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~g~~~~~~~w~ 248 (355)
T cd05804 179 DCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE----------LAGHVDVGDRWE 248 (355)
T ss_pred CCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH----------hcCCCChHHHHH
Confidence 2 2332 34567888899999999999999998643211121111101101111111 12322222222
Q ss_pred --HHHHHHccC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC---C---HHHHHHHHH--HHhccCCHHHHHH
Q 048743 487 --IQEMREEAA-LSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP---T---VETFYYLVY--GHSSLEMYRDITI 555 (653)
Q Consensus 487 --~~~m~~~~~-~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~---~~t~~~li~--~~~~~~~~~~a~~ 555 (653)
...-..... .......-....++...|+.++|..+++.+......+ . ..+-..++. ++...|+.++|.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~ 328 (355)
T cd05804 249 DLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALE 328 (355)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHH
Confidence 111111100 1112222357777788999999999999987633221 1 112222333 4568899999999
Q ss_pred HHHHHHHH
Q 048743 556 LWGDIKRN 563 (653)
Q Consensus 556 ~~~~~~~~ 563 (653)
.+......
T Consensus 329 ~L~~al~~ 336 (355)
T cd05804 329 LLGPVRDD 336 (355)
T ss_pred HHHHHHHH
Confidence 98877643
No 78
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.59 E-value=0.00036 Score=71.45 Aligned_cols=212 Identities=14% Similarity=0.130 Sum_probs=130.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhh
Q 048743 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466 (653)
Q Consensus 387 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~ 466 (653)
-..+...|+++.|...|-+... .-..|.+-....+|.+|..+++.+++.+.... ++.
T Consensus 713 g~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~~s~-yy~------------- 769 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKTASG-YYG------------- 769 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhccccc-cch-------------
Confidence 4455566777777766654322 12345666777889999999998887653322 121
Q ss_pred cccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 048743 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546 (653)
Q Consensus 467 ~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 546 (653)
.+.+.|+..|+++.|+++|-+-. .++-.|..|.+.|+|+.|.++-.+ -.|.+.....|..-..-+-+
T Consensus 770 --~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e--~~~~e~t~~~yiakaedlde 836 (1636)
T KOG3616|consen 770 --EIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEE--CHGPEATISLYIAKAEDLDE 836 (1636)
T ss_pred --HHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHH--hcCchhHHHHHHHhHHhHHh
Confidence 22366888999999999886533 356778889999999999888655 34445556667666667788
Q ss_pred cCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHhhhhhHHhh
Q 048743 547 LEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRL 626 (653)
Q Consensus 547 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~ 626 (653)
.|++.+|.+++-.+ -.|+. .|..|-+.|..+..+++.++-...-+.-....+..- ....|++..++
T Consensus 837 hgkf~eaeqlyiti--------~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e-~e~~g~lkaae 902 (1636)
T KOG3616|consen 837 HGKFAEAEQLYITI--------GEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKE-LEAEGDLKAAE 902 (1636)
T ss_pred hcchhhhhheeEEc--------cCchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHH-HHhccChhHHH
Confidence 88888888877322 13333 577888888888888887755322111111111111 22335554443
Q ss_pred hhhHHHHH--------HHHHhhHhHHHhHH
Q 048743 627 KVSNARTE--------AQSKRLVNVQAFRK 648 (653)
Q Consensus 627 ~~~~~~~~--------~~~~~~~~~~~~~~ 648 (653)
+-+=...+ ...+.|++|-++.|
T Consensus 903 ~~flea~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 903 EHFLEAGDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHhhhhHHHHHHHhhhhhhHHHHHHHHh
Confidence 32111111 45677888777655
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.59 E-value=0.0012 Score=67.12 Aligned_cols=98 Identities=6% Similarity=-0.029 Sum_probs=65.7
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHH
Q 048743 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS-IIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFY 253 (653)
Q Consensus 175 ~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (653)
.+.++|..+--.+....++++|.+.|...... .||... +--+--.-+..|+++........+.+..+ .....|
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~----~~ra~w 146 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP----SQRASW 146 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh----hhHHHH
Confidence 45567777777777778888888888887764 455554 43333333445666666665555544332 223458
Q ss_pred HHHHHhhhccCCHHHHHHHHHHhcc
Q 048743 254 ESLLSLHFKFDDIDAAGELILDMNR 278 (653)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~m~~ 278 (653)
..+..++.-.|+...|..+++...+
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999999988844
No 80
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=0.00023 Score=70.95 Aligned_cols=250 Identities=12% Similarity=0.011 Sum_probs=150.1
Q ss_pred CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHH
Q 048743 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVA-DAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQF 252 (653)
Q Consensus 174 ~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (653)
++....+..=|..+...|+..+-..+=..|.+. -| ...+|-++...|...|+..+|++.|.......+..-+ .
T Consensus 275 pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp----a 348 (611)
T KOG1173|consen 275 PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP----A 348 (611)
T ss_pred CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH----H
Confidence 344445555566666666666666666666654 33 3355666666666667777777776666554432222 4
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHH
Q 048743 253 YESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQEL 332 (653)
Q Consensus 253 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (653)
|-..-+.|+-.|.-|+|+..+...-+
T Consensus 349 Wl~fghsfa~e~EhdQAmaaY~tAar------------------------------------------------------ 374 (611)
T KOG1173|consen 349 WLAFGHSFAGEGEHDQAMAAYFTAAR------------------------------------------------------ 374 (611)
T ss_pred HHHHhHHhhhcchHHHHHHHHHHHHH------------------------------------------------------
Confidence 66666667767777776666554411
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC---
Q 048743 333 VLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA--- 409 (653)
Q Consensus 333 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 409 (653)
+..+.-.| +--+---|.+.++++.|.++|.+..... |.|+.+.+-+--...+.+.+.+|..+|+.....
T Consensus 375 --l~~G~hlP----~LYlgmey~~t~n~kLAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 375 --LMPGCHLP----SLYLGMEYMRTNNLKLAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred --hccCCcch----HHHHHHHHHHhccHHHHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence 00011111 1223334666777777777777766555 667776777766666777777777777766421
Q ss_pred ---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHH
Q 048743 410 ---GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL 486 (653)
Q Consensus 410 ---g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~ 486 (653)
...-...+++.|-.+|.+.+++++|...++..... .|.
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k------------------------------------- 487 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPK------------------------------------- 487 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCC-------------------------------------
Confidence 01113445666677777777777777777666542 222
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 048743 487 IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG 543 (653)
Q Consensus 487 ~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 543 (653)
+..+|.++--.|...|+++.|.+.|++-.. +.||-.+...++..
T Consensus 488 -----------~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 488 -----------DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred -----------chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 556667777777777777777777776543 56776665555553
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.53 E-value=0.0017 Score=66.11 Aligned_cols=440 Identities=13% Similarity=0.052 Sum_probs=239.1
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCC-chhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHH
Q 048743 19 REVLLRKLESASKNHQVGEAWETFNDFQRLHGIPE-RHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLA 97 (653)
Q Consensus 19 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~ 97 (653)
...+-..+.-+-..+++...+.+.+.+.. .+|. +.+....--.+...|+ .++|.+.+..-.+. ..-+...|.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~---~~ea~~~vr~glr~--d~~S~vCwH 79 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGK---KEEAYELVRLGLRN--DLKSHVCWH 79 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH--hCCccchhHHhccchhhcccc---hHHHHHHHHHHhcc--CcccchhHH
Confidence 33344444444566788888888888777 2333 3344333333444555 57888888654432 223556666
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCch
Q 048743 98 KLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDT 177 (653)
Q Consensus 98 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 177 (653)
.+--.+-...++++|+..|......+ ||... ++..+.-- -+++-...|..+.-.+++ ...+...
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~q---ilrDlslL----------Q~QmRd~~~~~~tr~~LL-ql~~~~r 143 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQ---ILRDLSLL----------QIQMRDYEGYLETRNQLL-QLRPSQR 143 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHH---HHHHHHHH----------HHHHHhhhhHHHHHHHHH-HhhhhhH
Confidence 66666666788999999999987763 44321 11111000 011111111111111111 1123345
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHH
Q 048743 178 MIFNLVLHACVRFGSSLKGQHIMELMSQTG-VVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESL 256 (653)
Q Consensus 178 ~~yn~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 256 (653)
..|..+..++.-.|+...|..++++..+.. -.|+...|.-..... |..
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L------------------------------y~n- 192 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL------------------------------YQN- 192 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH------------------------------HHH-
Confidence 678888888888999999999999988764 256666654322221 111
Q ss_pred HHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHh
Q 048743 257 LSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFR 336 (653)
Q Consensus 257 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (653)
....+.|.+++|.+.+..-.+
T Consensus 193 -~i~~E~g~~q~ale~L~~~e~---------------------------------------------------------- 213 (700)
T KOG1156|consen 193 -QILIEAGSLQKALEHLLDNEK---------------------------------------------------------- 213 (700)
T ss_pred -HHHHHcccHHHHHHHHHhhhh----------------------------------------------------------
Confidence 112345556666665544410
Q ss_pred cCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHc-CCHHHHHHHHHHHHHC---CC
Q 048743 337 NGKLLHSNRAM-AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL-GFLEAAHDILDDMELA---GH 411 (653)
Q Consensus 337 ~~~~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~---g~ 411 (653)
...|...| -+--..+.+.+++++|..++..+..+. |.+...|-.+..++.+- +..+....+|....+. .-
T Consensus 214 ---~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 214 ---QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred ---HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 00111111 123344566777777777777777776 66666455555555432 3333333555554432 11
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHH----HHHHH
Q 048743 412 PMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL----AESLI 487 (653)
Q Consensus 412 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----a~~~~ 487 (653)
.|-....+ ......-.+..-.++..+.+.|+++-. ..+ ..+.+ ...+.+- +..+.
T Consensus 289 ~p~Rlpls----vl~~eel~~~vdkyL~~~l~Kg~p~vf-~dl------~SLyk----------~p~k~~~le~Lvt~y~ 347 (700)
T KOG1156|consen 289 CPRRLPLS----VLNGEELKEIVDKYLRPLLSKGVPSVF-KDL------RSLYK----------DPEKVAFLEKLVTSYQ 347 (700)
T ss_pred cchhccHH----HhCcchhHHHHHHHHHHHhhcCCCchh-hhh------HHHHh----------chhHhHHHHHHHHHHH
Confidence 11111111 111123334444555666666654421 000 00000 0000111 11111
Q ss_pred HHHHHcc----------CCCCHHHHHH--HHHHHHcCCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHhccCCHHHHH
Q 048743 488 QEMREEA----------ALSTIYKLNS--SIYFFCKGKMIGDALKIYRRMQEMKIRPTVE-TFYYLVYGHSSLEMYRDIT 554 (653)
Q Consensus 488 ~~m~~~~----------~~p~~~~y~~--li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~ 554 (653)
+.+...| -.|++..|+. ++..|-+.|+++.|+.+++..+.+ .|+.+ -|..=.+.+.+.|++++|.
T Consensus 348 ~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa 425 (700)
T KOG1156|consen 348 HSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAA 425 (700)
T ss_pred hhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHH
Confidence 1111111 1356655554 677888999999999999987764 77754 3444557899999999999
Q ss_pred HHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 048743 555 ILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604 (653)
Q Consensus 555 ~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 604 (653)
.++++..+. =.+|+..-..-..-..++.+.++|.++.......|.
T Consensus 426 ~~l~ea~el-----D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 426 AWLDEAQEL-----DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHhc-----cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 999888522 234554444566667789999999999999988886
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.52 E-value=0.00015 Score=70.74 Aligned_cols=97 Identities=13% Similarity=-0.048 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (653)
..|..+-..+.+.|++++|...|++..+.. |.+...|+.+...+...|+++.|...|++..+... -+..+|..+..+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 456677777888899999999998888877 77777888888899999999999999988876432 246677778888
Q ss_pred HHHcCChHHHHHHHHHHHHc
Q 048743 425 YYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 425 ~~~~~~~~~a~~~~~~m~~~ 444 (653)
+...|++++|.+.|+...+.
T Consensus 142 l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 88889999998888888763
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.51 E-value=7.9e-05 Score=72.64 Aligned_cols=171 Identities=12% Similarity=-0.069 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (653)
...|+.+-..+...|++++|...|++..+.. |.+..+|..+..++...|++++|.+.|+...+.. |+.........
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~ 173 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLY 173 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 4567777777777777777777777777665 5566667777777777777777777777776643 32221111111
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHc---c--CCC-
Q 048743 424 AYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE---A--ALS- 497 (653)
Q Consensus 424 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~---~--~~p- 497 (653)
.+...+++++|...|.+.... ..|+.....+.. ...|+.+.+ ..+..+.+. . ..|
T Consensus 174 l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~~~~~-----------------~~lg~~~~~-~~~~~~~~~~~~~~~l~~~ 234 (296)
T PRK11189 174 LAESKLDPKQAKENLKQRYEK-LDKEQWGWNIVE-----------------FYLGKISEE-TLMERLKAGATDNTELAER 234 (296)
T ss_pred HHHccCCHHHHHHHHHHHHhh-CCccccHHHHHH-----------------HHccCCCHH-HHHHHHHhcCCCcHHHHHH
Confidence 233456677777777654432 223221111110 013343333 233333311 0 011
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFY 538 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 538 (653)
....|..+-..+.+.|++++|+..|++..+.+ .||-+-+.
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~ 274 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHR 274 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHH
Confidence 34568888888899999999999999888654 33544333
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.50 E-value=0.00011 Score=64.93 Aligned_cols=198 Identities=8% Similarity=-0.066 Sum_probs=163.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccH-HHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHH
Q 048743 179 IFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA-HSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLL 257 (653)
Q Consensus 179 ~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li 257 (653)
++-.|--+|.+.|+...|..-+++..+. .|+. .+|..+...|.+.|..+.|.+.|+...+..+.+-. +.|..-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd----VLNNYG 110 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD----VLNNYG 110 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc----hhhhhh
Confidence 4566777899999999999999999986 5655 45889999999999999999999999887543322 578888
Q ss_pred HhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhc
Q 048743 258 SLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRN 337 (653)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (653)
..+|..|++++|...|++-+....
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~-------------------------------------------------------- 134 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPA-------------------------------------------------------- 134 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCC--------------------------------------------------------
Confidence 889999999999999998843221
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048743 338 GKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTT 417 (653)
Q Consensus 338 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 417 (653)
..--..+|..+.-+..+.|+++.|...|++-.+.. +....+.-.+.....+.|++-.|...++.....+. ++..+
T Consensus 135 --Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~s 209 (250)
T COG3063 135 --YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAES 209 (250)
T ss_pred --CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHH
Confidence 22223467778888889999999999999998887 66666788899999999999999999999888766 89998
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 418 YKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 418 ~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
.-..|..-...|+.+.+-+.=..+.+
T Consensus 210 L~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 210 LLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88889888899999988877666665
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.002 Score=64.86 Aligned_cols=474 Identities=12% Similarity=0.039 Sum_probs=239.2
Q ss_pred HHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHH
Q 048743 58 NRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVH 137 (653)
Q Consensus 58 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 137 (653)
..++..+-+.+..+.+++|+....++....+. |...+..=+.++...+++++|+.+.+.=.. ..++++.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~--- 81 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSF--- 81 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchh---
Confidence 34555555555555577777777776544322 444555556667777777777754432110 0111111
Q ss_pred HhhcccccccchHHHHHHHHHh--hhhhhhhcCCccCCCC-chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH
Q 048743 138 MVKTEIGTCLASNFLIQLCDVF--LHLSAEKSNGAELIKP-DTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS 214 (653)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~-~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t 214 (653)
.+-.+|..+ +..++|.+.++ +..+ +..+-..=-..+-+.|++++|+.+|+.+.+.+. +|...
T Consensus 82 -------------~fEKAYc~Yrlnk~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~ 146 (652)
T KOG2376|consen 82 -------------FFEKAYCEYRLNKLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDE 146 (652)
T ss_pred -------------hHHHHHHHHHcccHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHH
Confidence 022333332 25566666555 3323 222333345667889999999999999987763 23222
Q ss_pred --HHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcc
Q 048743 215 --IIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDA 292 (653)
Q Consensus 215 --~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 292 (653)
-..++.+-. .-.+. +. ..............||.- ..++..|++.+|+++++..++.
T Consensus 147 ~~r~nl~a~~a----~l~~~-~~---q~v~~v~e~syel~yN~A-c~~i~~gky~qA~elL~kA~~~------------- 204 (652)
T KOG2376|consen 147 ERRANLLAVAA----ALQVQ-LL---QSVPEVPEDSYELLYNTA-CILIENGKYNQAIELLEKALRI------------- 204 (652)
T ss_pred HHHHHHHHHHH----hhhHH-HH---HhccCCCcchHHHHHHHH-HHHHhcccHHHHHHHHHHHHHH-------------
Confidence 111221111 01111 11 111111122233345543 4457789999999999877210
Q ss_pred cccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 048743 293 QKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNR-AMAKLINGYKKHGKNSELSWLLLSIK 371 (653)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~ 371 (653)
.++-+..+- . .+.++.-... +---|...+-..|+.++|..++....
T Consensus 205 ------------~~e~l~~~d-------------~--------~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 205 ------------CREKLEDED-------------T--------NEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred ------------HHHhhcccc-------------c--------chhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 000000000 0 0000000111 11234445667899999999999999
Q ss_pred hcCCCCCCcccHHHHHHHHHHcC---C-HH-HHHHHHHHHHHCCC----------CCCHHHHHHHHHHHHHcCChHHHHH
Q 048743 372 KEHHSFGESTLCSDVIDALIQLG---F-LE-AAHDILDDMELAGH----------PMDSTTYKSLLTAYYKVKMFREAEA 436 (653)
Q Consensus 372 ~~~~~~~~~~~~~~li~~~~~~g---~-~~-~a~~~~~~m~~~g~----------~p~~~~~~~li~~~~~~~~~~~a~~ 436 (653)
+.. ++|...-.+..+.+.... + ++ .++..++....... .-.....|..+-.+ ..+..+.+.+
T Consensus 252 ~~~--~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l-~tnk~~q~r~ 328 (652)
T KOG2376|consen 252 KRN--PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL-FTNKMDQVRE 328 (652)
T ss_pred Hhc--CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHH
Confidence 988 666653333322222211 1 11 12222222211100 00122223222222 2233444444
Q ss_pred HHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHH
Q 048743 437 LLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516 (653)
Q Consensus 437 ~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~ 516 (653)
+.... .+-.|...+.++...+.... ......+..++....+..-.-...+--+++......|+++
T Consensus 329 ~~a~l--p~~~p~~~~~~ll~~~t~~~-------------~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 329 LSASL--PGMSPESLFPILLQEATKVR-------------EKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHhC--CccCchHHHHHHHHHHHHHH-------------HHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 43322 12233333333333222211 2246667777777776542223455666777778899999
Q ss_pred HHHHHHH--------HHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCc-c-CHHHHHHHHHHHHhC
Q 048743 517 DALKIYR--------RMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLA-V-SRDLYETLLLNFLQG 586 (653)
Q Consensus 517 ~a~~~~~--------~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-p-~~~~y~~li~~~~~~ 586 (653)
.|++++. ...+.+..|..+ ..++..+.+.++-+.|..++++.....+..... + -..++.-+..--.++
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 9999998 555555556554 456666777777777777777665432222111 1 112233333344578
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHhh-hhhHHhhhhhHHHH
Q 048743 587 GYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHH-KHLYRRLKVSNART 633 (653)
Q Consensus 587 g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~-~~~~~~~~~~~~~~ 633 (653)
|+-++|..+++++.+.. ++|..+...++..+. =|.++|+.+...+.
T Consensus 472 G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLDPEKAESLSKKLP 518 (652)
T ss_pred CchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCHHHHHHHhhcCC
Confidence 99999999999998643 466666666664433 36667766655544
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=0.00074 Score=63.37 Aligned_cols=393 Identities=11% Similarity=0.029 Sum_probs=198.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhcc
Q 048743 184 LHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKF 263 (653)
Q Consensus 184 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 263 (653)
+.-+..+.|+..|..+++.-...+-+-...+-.-+..++-..|+.++|...+..+....+++.. ++-.|..++.-.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e----l~vnLAcc~FyL 104 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAE----LGVNLACCKFYL 104 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcc----cchhHHHHHHHH
Confidence 4555667777777777766554332222222223444555778888888777777665544443 344455555556
Q ss_pred CCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCC
Q 048743 264 DDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHS 343 (653)
Q Consensus 264 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 343 (653)
|.+.+|..+-.+.. .+.+ ...-++... ..+.--....+..+. +.-+
T Consensus 105 g~Y~eA~~~~~ka~-------k~pL----~~RLlfhla-------hklndEk~~~~fh~~----------------LqD~ 150 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAP-------KTPL----CIRLLFHLA-------HKLNDEKRILTFHSS----------------LQDT 150 (557)
T ss_pred HHHHHHHHHHhhCC-------CChH----HHHHHHHHH-------HHhCcHHHHHHHHHH----------------Hhhh
Confidence 77777776655541 1000 000000000 000000000000000 0000
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVI-DALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (653)
..---+|.......-.+.+|++++..+...+ + +-...|.-+ -.|.+..-++-+.++++-..+. ++-+....|...
T Consensus 151 ~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~-ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLka 226 (557)
T KOG3785|consen 151 LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--P-EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKA 226 (557)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--h-hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHH
Confidence 0111233333333446788888888887665 2 222234333 3455566677777777766654 333445555444
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHH--------------------HHhhhcccccccccccCCHHH
Q 048743 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS--------------------EVADKSASFTDTSSLMDKSDL 482 (653)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~--------------------~~~~~~~~~~~~~~~~~~~~~ 482 (653)
....+.=+-..|++-.+++.+.+-. .+..+...|-+ ...+..--++=.|-+.+++.+
T Consensus 227 cn~fRl~ngr~ae~E~k~ladN~~~---~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqe 303 (557)
T KOG3785|consen 227 CNLFRLINGRTAEDEKKELADNIDQ---EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQE 303 (557)
T ss_pred HHHhhhhccchhHHHHHHHHhcccc---cchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHH
Confidence 4443332222333333333332211 01111111100 000000011234667899999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHH-----HcCCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHhccCCHHHHHHH
Q 048743 483 AESLIQEMREEAALSTIYKLNSSIYFF-----CKGKMIGDALKIYRRMQEMKIRPTVET-FYYLVYGHSSLEMYRDITIL 556 (653)
Q Consensus 483 a~~~~~~m~~~~~~p~~~~y~~li~~~-----~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~~ 556 (653)
|..+.+++... .|-.+....++.+- .......-|.+.|+..-+.+..-|... -.++...+.-..++++.+-+
T Consensus 304 A~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Y 381 (557)
T KOG3785|consen 304 AISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTY 381 (557)
T ss_pred HHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 99888776532 13222222222211 112235567777766555555544332 23455556667788898888
Q ss_pred HHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHH--HH-hhhhhHHhhhhh
Q 048743 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEF--LK-HHKHLYRRLKVS 629 (653)
Q Consensus 557 ~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~--~~-~~~~~~~~~~~~ 629 (653)
++.+. +.-...|...|| +.++++..|.+.+|+++|-......+ -|..+|.+++ |. ..|..+.|..+.
T Consensus 382 lnSi~----sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 382 LNSIE----SYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHH----HHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 87775 445556666676 78899999999999999987764443 4678888887 44 345565665443
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.46 E-value=0.00014 Score=64.26 Aligned_cols=191 Identities=12% Similarity=-0.052 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY 425 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (653)
+..-|--+|.+.|+...|..-+++..+.+ |.+..+|..+...|-+.|+.+.|.+-|+...+... -+....|..-.=+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHH
Confidence 45566777888888888888888888877 77777788888888888888888888888766432 2445566666667
Q ss_pred HHcCChHHHHHHHHHHHHcCCccCc--hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHHH
Q 048743 426 YKVKMFREAEALLKQMRKSCLVQNL--SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKL 502 (653)
Q Consensus 426 ~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y 502 (653)
|..|++++|...|+.....-.-|.. ++..+. +| ..+.|+.+.|...|++-.+.. | ...+.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G------~C---------al~~gq~~~A~~~l~raL~~d--p~~~~~~ 176 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLG------LC---------ALKAGQFDQAEEYLKRALELD--PQFPPAL 176 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhH------HH---------HhhcCCchhHHHHHHHHHHhC--cCCChHH
Confidence 8888888888888887764222221 111110 01 112455555555555444433 2 22333
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048743 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557 (653)
Q Consensus 503 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 557 (653)
-.+.....+.|++..|..+++.....+. ++.......|+.--+.|+.+.+-++=
T Consensus 177 l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 177 LELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4444444455555555555554444433 45554444444444555544444443
No 88
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.44 E-value=0.0014 Score=67.27 Aligned_cols=198 Identities=11% Similarity=0.050 Sum_probs=139.7
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHH
Q 048743 21 VLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLS 100 (653)
Q Consensus 21 ~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li 100 (653)
.....|.+..+...|..|+.+++.++.+ .....-|..+-..++..|+ .+.|.++|.+. ..++-.|
T Consensus 734 ~~~kaieaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~d---fe~ae~lf~e~----------~~~~dai 798 (1636)
T KOG3616|consen 734 CLIKAIEAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGD---FEIAEELFTEA----------DLFKDAI 798 (1636)
T ss_pred hHHHHHHHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchh---HHHHHHHHHhc----------chhHHHH
Confidence 3455677888889999999999988773 2233467888888888887 78899998663 1345568
Q ss_pred HHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCchhhH
Q 048743 101 LSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIF 180 (653)
Q Consensus 101 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~y 180 (653)
..|.++|++..|.++-++.... ......|..- .+-...+|++.+|++++-..-.|+.
T Consensus 799 ~my~k~~kw~da~kla~e~~~~--e~t~~~yiak------------------aedldehgkf~eaeqlyiti~~p~~--- 855 (1636)
T KOG3616|consen 799 DMYGKAGKWEDAFKLAEECHGP--EATISLYIAK------------------AEDLDEHGKFAEAEQLYITIGEPDK--- 855 (1636)
T ss_pred HHHhccccHHHHHHHHHHhcCc--hhHHHHHHHh------------------HHhHHhhcchhhhhheeEEccCchH---
Confidence 8999999999999998766432 2222222211 2233556788888888877777765
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCccH--HHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHH
Q 048743 181 NLVLHACVRFGSSLKGQHIMELMSQTGVVADA--HSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLS 258 (653)
Q Consensus 181 n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~ 258 (653)
-|..|-+.|..+..+++.+.- .||. .|..-+..-+...|++..|+.-|-.... |.+-++
T Consensus 856 --aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d------------~kaavn 916 (1636)
T KOG3616|consen 856 --AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD------------FKAAVN 916 (1636)
T ss_pred --HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh------------HHHHHH
Confidence 367788888888887776542 2232 3455666777788999998877655433 778888
Q ss_pred hhhccCCHHHHHHHHHH
Q 048743 259 LHFKFDDIDAAGELILD 275 (653)
Q Consensus 259 ~~~~~g~~~~A~~~~~~ 275 (653)
+|-..+.+++|.++-+.
T Consensus 917 myk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 917 MYKASELWEDAYRIAKT 933 (1636)
T ss_pred HhhhhhhHHHHHHHHhc
Confidence 89888888888877643
No 89
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=0.0031 Score=65.82 Aligned_cols=214 Identities=11% Similarity=-0.018 Sum_probs=114.8
Q ss_pred cccchHHHHHHHH--HHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccC---
Q 048743 14 WEGSSREVLLRKL--ESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKA--- 88 (653)
Q Consensus 14 ~~~p~~~~~~~~i--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~--- 88 (653)
++.-+..|-..++ ..|...|+++.|.+-++.++ +..+|..|-+.|.+..+ ++-|---+-.|..-.|
T Consensus 721 le~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~R---LDVAkVClGhm~~aRgaRA 791 (1416)
T KOG3617|consen 721 LENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRR---LDVAKVCLGHMKNARGARA 791 (1416)
T ss_pred ccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhcc---ccHHHHhhhhhhhhhhHHH
Confidence 4444555555554 34556677777766655432 34566666666666654 2222211111110000
Q ss_pred -----CchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhh
Q 048743 89 -----DLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLS 163 (653)
Q Consensus 89 -----~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 163 (653)
..++ ++=..+.......|..++|+.+|.+-++. +.+-+.|.-.|.++
T Consensus 792 lR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------------------------DLlNKlyQs~g~w~ 843 (1416)
T KOG3617|consen 792 LRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------------------------DLLNKLYQSQGMWS 843 (1416)
T ss_pred HHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------------------------HHHHHHHHhcccHH
Confidence 0011 22222223334566677777777665543 23444555556666
Q ss_pred hhhcCCccCCCCc-hhhHHHHHHHHHhcCChhhHHHHHHHHHh----------cC---------CCccHHHHHHHHHHHH
Q 048743 164 AEKSNGAELIKPD-TMIFNLVLHACVRFGSSLKGQHIMELMSQ----------TG---------VVADAHSIIILAQIHE 223 (653)
Q Consensus 164 ~a~~~~~~~~~~~-~~~yn~li~~~~~~g~~~~a~~l~~~m~~----------~g---------~~p~~~t~~~ll~~~~ 223 (653)
+|.++-+..-+.. ..||-.-..-+-..+|.+.|++.|+.-.. .. -.-|...|.-......
T Consensus 844 eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlE 923 (1416)
T KOG3617|consen 844 EAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLE 923 (1416)
T ss_pred HHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHh
Confidence 6666654322111 12444445555556777776666653221 10 1224444555666666
Q ss_pred hcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHh
Q 048743 224 MNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDM 276 (653)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 276 (653)
..|+++.|..++..... |-+++...|-.|++++|-++-++-
T Consensus 924 S~GemdaAl~~Y~~A~D------------~fs~VrI~C~qGk~~kAa~iA~es 964 (1416)
T KOG3617|consen 924 SVGEMDAALSFYSSAKD------------YFSMVRIKCIQGKTDKAARIAEES 964 (1416)
T ss_pred cccchHHHHHHHHHhhh------------hhhheeeEeeccCchHHHHHHHhc
Confidence 77888888888876655 667777777788888887777665
No 90
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.36 E-value=5.4e-07 Score=55.77 Aligned_cols=35 Identities=14% Similarity=0.340 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccH
Q 048743 178 MIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA 212 (653)
Q Consensus 178 ~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 212 (653)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.35 E-value=0.013 Score=67.67 Aligned_cols=427 Identities=9% Similarity=-0.029 Sum_probs=235.2
Q ss_pred CchHHHHHHHHHcCccC--C---C--chhHHHHHHHHhhcccc---cccc---hHHHHHHHHHhhhhhhhhcCCccCCCC
Q 048743 109 PVPASMILRLMLGRENL--P---C--SDLLLLVFVHMVKTEIG---TCLA---SNFLIQLCDVFLHLSAEKSNGAELIKP 175 (653)
Q Consensus 109 ~~~a~~~~~~m~~~g~~--p---~--~~~~~~li~~~~~~~~~---~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 175 (653)
.+.+.++++++.+.|.- | + .+.|+-++..++..... .... .......+...|.+..+.........+
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~ 370 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPELHRAAAEAWLAQGFPSEAIHHALAAGDA 370 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH
Confidence 45567888888887751 2 1 35577777766654321 1111 111122222233433332222111111
Q ss_pred chhh--HHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCC-----cccc
Q 048743 176 DTMI--FNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTP-----FAHH 248 (653)
Q Consensus 176 ~~~~--yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~ 248 (653)
.... ...........|+++.+...++.+.......+..........+...|+.+++...+......-.. ....
T Consensus 371 ~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~ 450 (903)
T PRK04841 371 QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTL 450 (903)
T ss_pred HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhH
Confidence 1111 11112234456777776666665532211112222233344455678888888877766443111 0000
Q ss_pred hhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhh
Q 048743 249 YQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEG 328 (653)
Q Consensus 249 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (653)
.......+-..+...|++++|...+++..... +
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---~-------------------------------------------- 483 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAEL---P-------------------------------------------- 483 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---C--------------------------------------------
Confidence 11122223344567889999988888762200 0
Q ss_pred hHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CC--CcccHHHHHHHHHHcCCHHHHHHHH
Q 048743 329 KQELVLFRNGKLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHS--FG--ESTLCSDVIDALIQLGFLEAAHDIL 403 (653)
Q Consensus 329 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~--~~~~~~~li~~~~~~g~~~~a~~~~ 403 (653)
.+..+ -....+.+-..+...|++++|...+++....... .+ ...++..+...+...|+++.|...+
T Consensus 484 ---------~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 554 (903)
T PRK04841 484 ---------LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQ 554 (903)
T ss_pred ---------CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 00000 0123455666677899999999998887643211 11 1123455667778899999999998
Q ss_pred HHHHH----CCCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CccCchhhHHHHhhHHHHhhhcccccccc
Q 048743 404 DDMEL----AGHP--M-DSTTYKSLLTAYYKVKMFREAEALLKQMRKSC--LVQNLSCEMVVSERFSEVADKSASFTDTS 474 (653)
Q Consensus 404 ~~m~~----~g~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 474 (653)
++..+ .|.. + ....+..+...+...|++++|...+.+..... ..+... . ......+ ..+
T Consensus 555 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~--~-~~~~~la---------~~~ 622 (903)
T PRK04841 555 EKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ--L-QCLAMLA---------KIS 622 (903)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH--H-HHHHHHH---------HHH
Confidence 87644 2221 1 22344455566777899999999998876531 112111 1 1111111 112
Q ss_pred cccCCHHHHHHHHHHHHHccCCC-CHHHH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHh
Q 048743 475 SLMDKSDLAESLIQEMREEAALS-TIYKL-----NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV---ETFYYLVYGHS 545 (653)
Q Consensus 475 ~~~~~~~~a~~~~~~m~~~~~~p-~~~~y-----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~ 545 (653)
...|+.+.|...+++........ ....+ ...+..+...|+.+.|.+++............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 34799999999988775421101 11111 11234455689999999998775542211111 11345667788
Q ss_pred ccCCHHHHHHHHHHHHHHhhhCCCccC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 048743 546 SLEMYRDITILWGDIKRNIESGVLAVS-RDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603 (653)
Q Consensus 546 ~~~~~~~a~~~~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 603 (653)
..|+.++|..+++......+..+..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999988766555555443 2456666777889999999999999887654
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=0.006 Score=63.80 Aligned_cols=250 Identities=12% Similarity=0.047 Sum_probs=149.6
Q ss_pred hhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcC-ccCCCchhHHHHHHHHhhcccccccchHH
Q 048743 73 LQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGR-ENLPCSDLLLLVFVHMVKTEIGTCLASNF 151 (653)
Q Consensus 73 ~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~~~~~~ 151 (653)
++.|++-.+-+ .+...|..+.+.|.+.++.+-|.-.+..|... |. +
T Consensus 744 MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga-----------R--------------- 790 (1416)
T KOG3617|consen 744 MDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA-----------R--------------- 790 (1416)
T ss_pred HHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH-----------H---------------
Confidence 66666665444 25567777788888888888777777777543 10 0
Q ss_pred HHHHHHHhhhhhhhhcCCccCCCCc-hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhh
Q 048743 152 LIQLCDVFLHLSAEKSNGAELIKPD-TMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDE 230 (653)
Q Consensus 152 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 230 (653)
.+..|.+ .|+ ...- +.......|.+++|+.+|.+-++. ..|-+.|...|.+++
T Consensus 791 ---------AlR~a~q------~~~e~eak--vAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~e 844 (1416)
T KOG3617|consen 791 ---------ALRRAQQ------NGEEDEAK--VAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSE 844 (1416)
T ss_pred ---------HHHHHHh------CCcchhhH--HHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHH
Confidence 1111111 121 1111 111224578888888888887763 345566777888888
Q ss_pred hHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhh
Q 048743 231 LKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLK 310 (653)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (653)
|.++-+.-.+. +-..+|..-..-+-..+|++.|+++|++--. ..
T Consensus 845 A~eiAE~~DRi------HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~----ha-------------------------- 888 (1416)
T KOG3617|consen 845 AFEIAETKDRI------HLRNTYYNYAKYLEARRDIEAALEYYEKAGV----HA-------------------------- 888 (1416)
T ss_pred HHHHHhhccce------ehhhhHHHHHHHHHhhccHHHHHHHHHhcCC----hH--------------------------
Confidence 88876553332 1122455555555567888899888887610 00
Q ss_pred hccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 048743 311 LQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDAL 390 (653)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 390 (653)
.++..-+.+.-..+. .... -..|...|.-.-.-.-..|+++.|+.+|...+. |-.+++..
T Consensus 889 fev~rmL~e~p~~~e--------~Yv~--~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~ 948 (1416)
T KOG3617|consen 889 FEVFRMLKEYPKQIE--------QYVR--RKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIK 948 (1416)
T ss_pred HHHHHHHHhChHHHH--------HHHH--hccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeE
Confidence 000000000000000 0001 112333444444444568999999999987653 77888888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 391 IQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 391 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
|-.|+.++|-++-++ . .|....-.|...|-+.|++.+|..+|-+.+.
T Consensus 949 C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEE---S---GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred eeccCchHHHHHHHh---c---ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 889999999888765 2 2666667788889999999999999877654
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.35 E-value=3.6e-05 Score=73.89 Aligned_cols=153 Identities=16% Similarity=0.050 Sum_probs=96.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhc
Q 048743 388 DALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKS 467 (653)
Q Consensus 388 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~ 467 (653)
..+...|+++.|++++..- .+.......+..|.+.++++.|.+.++.|.+. ..|...+.+..+.+. +.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~-l~--- 177 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVN-LA--- 177 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHH-HH---
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHH-HH---
Confidence 3444567788877777542 35666677777888888888888888888653 344322222222211 11
Q ss_pred ccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 048743 468 ASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL 547 (653)
Q Consensus 468 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 547 (653)
.-.+++..|..+|+++.+. ..+++.+.|.+.-++...|++++|.+++.+..+.. +-|..|...++......
T Consensus 178 -------~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~ 248 (290)
T PF04733_consen 178 -------TGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHL 248 (290)
T ss_dssp -------HTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHT
T ss_pred -------hCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHh
Confidence 1124577788888887654 33677888888888888899999998888876543 22456667777777777
Q ss_pred CCH-HHHHHHHHHHH
Q 048743 548 EMY-RDITILWGDIK 561 (653)
Q Consensus 548 ~~~-~~a~~~~~~~~ 561 (653)
|+. +.+.+++..+.
T Consensus 249 gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 249 GKPTEAAERYLSQLK 263 (290)
T ss_dssp T-TCHHHHHHHHHCH
T ss_pred CCChhHHHHHHHHHH
Confidence 776 56777777665
No 94
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.34 E-value=7.4e-07 Score=54.65 Aligned_cols=34 Identities=24% Similarity=0.479 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc
Q 048743 177 TMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVA 210 (653)
Q Consensus 177 ~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p 210 (653)
+.+||++|++|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.0078 Score=64.46 Aligned_cols=212 Identities=11% Similarity=0.026 Sum_probs=119.2
Q ss_pred HHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhH-HHHH
Q 048743 57 VNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLL-LLVF 135 (653)
Q Consensus 57 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~li 135 (653)
|-.+|+.+.+.. .+++.+....+.+..+. ...++.+...+........+...+-...+.. .|+.... +.++
T Consensus 513 ymflLq~l~r~s----PD~~~qFa~~l~Q~~~~---~~die~I~DlFme~N~iQq~TSFLLdaLK~~-~Pd~g~LQTrLL 584 (1666)
T KOG0985|consen 513 YMFLLQQLKRSS----PDQALQFAMMLVQDEEP---LADIEQIVDLFMELNLIQQCTSFLLDALKLN-SPDEGHLQTRLL 584 (1666)
T ss_pred HHHHHHHHHccC----hhHHHHHHHHhhccCCC---cccHHHHHHHHHHHHhhhhhHHHHHHHhcCC-ChhhhhHHHHHH
Confidence 556677776654 35666666555554432 2223444555555555555555544443322 3333321 1122
Q ss_pred HHHhhccc-----------ccccchHHHHHHHHHhhhhhhhhcCCccC--CCCchhhHHHH----HHHHHhcCChhhHHH
Q 048743 136 VHMVKTEI-----------GTCLASNFLIQLCDVFLHLSAEKSNGAEL--IKPDTMIFNLV----LHACVRFGSSLKGQH 198 (653)
Q Consensus 136 ~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~yn~l----i~~~~~~g~~~~a~~ 198 (653)
......++ -+..-+-.+.+.|.+.|-...|.+.+... ++..++.-+.| +-.|.-.-.++.+.+
T Consensus 585 E~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~e 664 (1666)
T KOG0985|consen 585 EMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLE 664 (1666)
T ss_pred HHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHH
Confidence 11111111 11122456778888888777777665532 12222221111 234555567889999
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcC--------CCcccchhHHHHHHHHhhhccCCHHHHH
Q 048743 199 IMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLS--------TPFAHHYQQFYESLLSLHFKFDDIDAAG 270 (653)
Q Consensus 199 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~ 270 (653)
.++.|...+++-|..+..-+..-|...-..+...++|+...... .-+...|..+.-..|.+-|+.|++.+..
T Consensus 665 clkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvE 744 (1666)
T KOG0985|consen 665 CLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVE 744 (1666)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHH
Confidence 99999999888888777766666666666666667766665431 1222333345567889999999999888
Q ss_pred HHHHHh
Q 048743 271 ELILDM 276 (653)
Q Consensus 271 ~~~~~m 276 (653)
++.++-
T Consensus 745 Ricres 750 (1666)
T KOG0985|consen 745 RICRES 750 (1666)
T ss_pred HHHhcc
Confidence 876554
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.29 E-value=4.4e-05 Score=73.35 Aligned_cols=200 Identities=14% Similarity=0.144 Sum_probs=130.4
Q ss_pred cCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccch
Q 048743 171 ELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVA-DAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHY 249 (653)
Q Consensus 171 ~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 249 (653)
....|.......+...+...++-+.++.-+++....+..+ +..........+...|++++|.+++.... ..
T Consensus 60 ~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~-----~l--- 131 (290)
T PF04733_consen 60 KSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG-----SL--- 131 (290)
T ss_dssp TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT-----CH---
T ss_pred cCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC-----cc---
Confidence 3346666666555544444355566666555544444332 33333344456667899999888876531 12
Q ss_pred hHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhh
Q 048743 250 QQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGK 329 (653)
Q Consensus 250 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (653)
......+..|.+.++++.|.+.++.|.+
T Consensus 132 -E~~al~Vqi~L~~~R~dlA~k~l~~~~~--------------------------------------------------- 159 (290)
T PF04733_consen 132 -ELLALAVQILLKMNRPDLAEKELKNMQQ--------------------------------------------------- 159 (290)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHHHC---------------------------------------------------
T ss_pred -cHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------------------------------------------
Confidence 2356778899999999999999999932
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 048743 330 QELVLFRNGKLLHSNRAMAKLINGY----KKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405 (653)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 405 (653)
...|. +...+..++ .-...+.+|..+|+++.... ++++.+.+.+..++...|++++|.+++.+
T Consensus 160 ----------~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 160 ----------IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp ----------CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred ----------cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 11232 222333333 33456899999999988765 56777788899999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHc
Q 048743 406 MELAGHPMDSTTYKSLLTAYYKVKMF-REAEALLKQMRKS 444 (653)
Q Consensus 406 m~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~ 444 (653)
..+... -++.+...++.+....|+. +.+.+++.++...
T Consensus 227 al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 227 ALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 876543 3677888888888888887 6778888888774
No 97
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.25 E-value=1.6e-06 Score=53.52 Aligned_cols=34 Identities=32% Similarity=0.552 Sum_probs=32.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH
Q 048743 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534 (653)
Q Consensus 501 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 534 (653)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999983
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.22 E-value=0.0039 Score=58.51 Aligned_cols=211 Identities=10% Similarity=0.000 Sum_probs=130.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhh
Q 048743 182 LVLHACVRFGSSLKGQHIMELMSQTGVVADAHS-IIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLH 260 (653)
Q Consensus 182 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 260 (653)
-|-+.+..+|.+..|+.-|....+- .|+.+. +---...|...|+-..|..=++.+.+..+.... ..----..+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~----ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMA----ARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHH----HHHHhchhh
Confidence 3455566677777777777766643 344332 222234455566666666666665554322211 111122445
Q ss_pred hccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCC
Q 048743 261 FKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKL 340 (653)
Q Consensus 261 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (653)
.+.|.+++|..=|+...+.. |.+. .. .. ....+
T Consensus 117 lK~Gele~A~~DF~~vl~~~---~s~~---------------------~~-------------~e----------aqskl 149 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE---PSNG---------------------LV-------------LE----------AQSKL 149 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC---CCcc---------------------hh-------------HH----------HHHHH
Confidence 67888999888888874311 1100 00 00 01112
Q ss_pred CCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048743 341 LHSNRAM--AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTY 418 (653)
Q Consensus 341 ~p~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 418 (653)
.+....| ...+..+.-.|+...|+.....+.+-. |-+...|..-..+|...|++..|..=++...+..- -+..++
T Consensus 150 ~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ 226 (504)
T KOG0624|consen 150 ALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGH 226 (504)
T ss_pred HhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHH
Confidence 2222222 345666677899999999999988876 77777788888999999999999877766655432 245555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 419 KSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 419 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
--+-..+...|+.+.++...++..+ +.||-
T Consensus 227 ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 227 YKISQLLYTVGDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence 5667778889999998888888776 56764
No 99
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.22 E-value=2e-06 Score=52.67 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 048743 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP 532 (653)
Q Consensus 500 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 532 (653)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.0028 Score=58.25 Aligned_cols=337 Identities=12% Similarity=0.048 Sum_probs=190.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHH-HH
Q 048743 180 FNLVLHACVRFGSSLKGQHIMELMSQTGVVA-DAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYES-LL 257 (653)
Q Consensus 180 yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-li 257 (653)
+++++..+.+..+++.|.+++..-.+. .| +....+.+..+|-...++..|-..++++.+.-+.. . -|.. -.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-~----qYrlY~A 85 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-E----QYRLYQA 85 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-H----HHHHHHH
Confidence 566777778888999999988877765 34 55557788888888889999998888887643211 1 1211 12
Q ss_pred HhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhc
Q 048743 258 SLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRN 337 (653)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (653)
..+-+.+.+..|+++...|...
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---------------------------------------------------------- 107 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---------------------------------------------------------- 107 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC----------------------------------------------------------
Confidence 3345667888888888877210
Q ss_pred CCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC
Q 048743 338 GKLLHSNRAMAKLING--YKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA-GHPMD 414 (653)
Q Consensus 338 ~~~~p~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~ 414 (653)
|+...-..-+.+ ....+++-.+..++++....+ +..+.+..--...+.|+.+.|.+-|+...+- |.. .
T Consensus 108 ----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-p 178 (459)
T KOG4340|consen 108 ----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-P 178 (459)
T ss_pred ----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHHHHHHHHHHHhhcCCC-c
Confidence 000000111111 224677777777777765444 1222333333445778888888888777553 444 4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCcc-------------Cc-h--hhHHHHhhHHHHhhhcccccccccccC
Q 048743 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQ-------------NL-S--CEMVVSERFSEVADKSASFTDTSSLMD 478 (653)
Q Consensus 415 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-------------~~-~--~~~~~~~~l~~~~~~~~~~~~~~~~~~ 478 (653)
...||..+ +..+.++++.|+++..++.++|+.- |. + ++..+ -..++...-+...-.+.+.+
T Consensus 179 llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l--h~Sal~eAfNLKaAIeyq~~ 255 (459)
T KOG4340|consen 179 LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL--HQSALVEAFNLKAAIEYQLR 255 (459)
T ss_pred hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH--HHHHHHHHhhhhhhhhhhcc
Confidence 56676655 3445577888888888887777532 11 0 11100 00111111111122345678
Q ss_pred CHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048743 479 KSDLAESLIQEMREEAA-LSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557 (653)
Q Consensus 479 ~~~~a~~~~~~m~~~~~-~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 557 (653)
+.+.|.+-+-.|..+.- ..|++|...+.-.=+ .+++.+..+-+.-+.+.+. .-..||..++-.||+..-++.|-.++
T Consensus 256 n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 256 NYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred cHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 88889888888873221 225555544433222 3444444444444444432 34678999999999999888888777
Q ss_pred HHHHHHhhhCCCccCHHHHHHHHHHHHhC-CCHHHHHHHHHHH
Q 048743 558 GDIKRNIESGVLAVSRDLYETLLLNFLQG-GYFERVMEVIGYM 599 (653)
Q Consensus 558 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~-g~~~~a~~~~~~m 599 (653)
.+-... .-...+...|+ +++++... -..++|.+-++.+
T Consensus 334 AEn~~l---Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 334 AENAHL---TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred hhCcch---hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 432100 00112344454 55555543 4456665544433
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.15 E-value=0.00071 Score=63.80 Aligned_cols=101 Identities=12% Similarity=-0.005 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--H
Q 048743 342 HSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES---TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDS--T 416 (653)
Q Consensus 342 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~ 416 (653)
.....+..+...+.+.|++++|...|+++.... |.+. ..+..+...+.+.|+++.|...++++.+....... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 344566777777888888888888888877765 4332 24566777888888888888888888764321111 1
Q ss_pred HHHHHHHHHHHc--------CChHHHHHHHHHHHHc
Q 048743 417 TYKSLLTAYYKV--------KMFREAEALLKQMRKS 444 (653)
Q Consensus 417 ~~~~li~~~~~~--------~~~~~a~~~~~~m~~~ 444 (653)
++..+-.++... |++++|.+.|+.+.+.
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 333333344433 5566677777666653
No 102
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.02 Score=61.59 Aligned_cols=207 Identities=11% Similarity=0.083 Sum_probs=119.5
Q ss_pred ccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhc-CC-CCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchh
Q 048743 15 EGSSREVLLRKLESASKNHQVGEAWETFNDFQRLH-GI-PERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQ 92 (653)
Q Consensus 15 ~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~-~~-~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 92 (653)
+..+++.....+.++-..+-..+.+++++.+.-.. .+ -+...-|.+|-...++.+ .+..+...++-. -..|+
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~----trVm~YI~rLdn--yDa~~ 1053 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADR----TRVMEYINRLDN--YDAPD 1053 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcCh----HHHHHHHHHhcc--CCchh
Confidence 34455555566666666666777777777654321 11 112233555555444433 334444444311 11122
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccC
Q 048743 93 LDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAEL 172 (653)
Q Consensus 93 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 172 (653)
+...+..++-+++|+.+|....- +......+|..+ ++++.|.+.-++.
T Consensus 1054 ------ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie~i---------------------~~ldRA~efAe~~ 1101 (1666)
T KOG0985|consen 1054 ------IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIENI---------------------GSLDRAYEFAERC 1101 (1666)
T ss_pred ------HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHHHh---------------------hhHHHHHHHHHhh
Confidence 22334455666777777765522 222233332221 2333333332232
Q ss_pred CCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcC-CCcccchhH
Q 048743 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLS-TPFAHHYQQ 251 (653)
Q Consensus 173 ~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~ 251 (653)
.+ ...|..+..+-.+.|...+|.+-|-.. -|+..|.-++..+.+.|.+++..+.+....+.. .|.+.
T Consensus 1102 n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id---- 1169 (1666)
T KOG0985|consen 1102 NE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID---- 1169 (1666)
T ss_pred CC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch----
Confidence 23 357888889988999888888766432 255668889999999999999888887776653 35554
Q ss_pred HHHHHHHhhhccCCHHHHHHHH
Q 048743 252 FYESLLSLHFKFDDIDAAGELI 273 (653)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~ 273 (653)
+.||-+|++.+++.+-.+++
T Consensus 1170 --~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1170 --SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred --HHHHHHHHHhchHHHHHHHh
Confidence 78999999999888776654
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00073 Score=61.88 Aligned_cols=290 Identities=10% Similarity=0.001 Sum_probs=186.4
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccc
Q 048743 215 IIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQK 294 (653)
Q Consensus 215 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 294 (653)
+..++..+.+..++..+.+++..-.+..+... .-...|-.+|-...++..|-..++++.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~r----AgLSlLgyCYY~~Q~f~~AA~CYeQL~q---------------- 72 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSR----AGLSLLGYCYYRLQEFALAAECYEQLGQ---------------- 72 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------
Confidence 45556666677788888888777665543222 2477888889999999999999999822
Q ss_pred cchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHhc
Q 048743 295 PYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMA-KLINGYKKHGKNSELSWLLLSIKKE 373 (653)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~ 373 (653)
..|...-|. .--..+.+.+.+..|+++...|...
T Consensus 73 ---------------------------------------------l~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~ 107 (459)
T KOG4340|consen 73 ---------------------------------------------LHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN 107 (459)
T ss_pred ---------------------------------------------hChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC
Confidence 335444442 2234556778889999999888653
Q ss_pred CCCCCCcccHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCccCc
Q 048743 374 HHSFGESTLCSDVIDALI--QLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK-SCLVQNL 450 (653)
Q Consensus 374 ~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~ 450 (653)
. +...-..-+.+.. ..+++..+..+++.....| +..+.+..--...+.|+++.|.+-|+...+ .|..|-.
T Consensus 108 ~----~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll 180 (459)
T KOG4340|consen 108 P----ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL 180 (459)
T ss_pred H----HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence 2 1111111122222 3578888888887765432 344444444445789999999999999887 6778765
Q ss_pred hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCC-------------CCHH--------HHHHHHHH-
Q 048743 451 SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAAL-------------STIY--------KLNSSIYF- 508 (653)
Q Consensus 451 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-------------p~~~--------~y~~li~~- 508 (653)
.+++.+. ..+.++.+.|.+...++.++|+. ||+. .-+.++.+
T Consensus 181 AYniALa----------------Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 181 AYNLALA----------------HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHH----------------HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 4444332 22478999999999999988871 2211 22334443
Q ss_pred ------HHcCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc-CHHHHHHHH
Q 048743 509 ------FCKGKMIGDALKIYRRMQE-MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV-SRDLYETLL 580 (653)
Q Consensus 509 ------~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p-~~~~y~~li 580 (653)
+.+.|+.+.|.+-+-+|-- ..-..|++|...+.-.-.. +++-+..+-+.-+. ++.| -..||..++
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~KLqFLL------~~nPfP~ETFANlL 317 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEKLQFLL------QQNPFPPETFANLL 317 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHHHHHHH------hcCCCChHHHHHHH
Confidence 3567889999988888863 2345677887654332222 22333333333333 2222 456888888
Q ss_pred HHHHhCCCHHHHHHHHHHH
Q 048743 581 LNFLQGGYFERVMEVIGYM 599 (653)
Q Consensus 581 ~~~~~~g~~~~a~~~~~~m 599 (653)
-.||+..-++-|-+++-+=
T Consensus 318 llyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHhhhHHHhHHHHHHhhC
Confidence 8999999999998888654
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.10 E-value=0.0022 Score=70.84 Aligned_cols=230 Identities=11% Similarity=0.051 Sum_probs=169.6
Q ss_pred HHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHH
Q 048743 252 FYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQE 331 (653)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (653)
.|-..|.-+...+++++|.+++++..+.-+.. ++.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~R-----------------------Eee---------------------- 1494 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFR-----------------------EEE---------------------- 1494 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc-----------------------hhH----------------------
Confidence 58888888999999999999999884211100 000
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048743 332 LVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGH 411 (653)
Q Consensus 332 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 411 (653)
--...|.++++.-.--|.-+...++|++..+.. ....+|..|...|.+.+..++|-++|+.|.+. +
T Consensus 1495 ----------EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F 1560 (1710)
T KOG1070|consen 1495 ----------EKLNIWIAYLNLENAYGTEESLKKVFERACQYC---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-F 1560 (1710)
T ss_pred ----------HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-h
Confidence 001256677777777777888999999988765 33445999999999999999999999999874 3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc-hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHH
Q 048743 412 PMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEM 490 (653)
Q Consensus 412 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m 490 (653)
.-....|...+..+.+.++-+.|..++.+..+. .|.. -...+.... ++-.+.|+.+++..+|+..
T Consensus 1561 ~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfA------------qLEFk~GDaeRGRtlfEgl 1626 (1710)
T KOG1070|consen 1561 GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFA------------QLEFKYGDAERGRTLFEGL 1626 (1710)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHH------------HHHhhcCCchhhHHHHHHH
Confidence 357789999999999999999999999998874 3442 222222211 1223589999999999998
Q ss_pred HHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHhccCCHHHHHHH
Q 048743 491 REEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVE--TFYYLVYGHSSLEMYRDITIL 556 (653)
Q Consensus 491 ~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~~~~~~a~~~ 556 (653)
.... | -.-.|+..|+.=.++|+.+.+..+|++.+..++.|-.. .|.-.+.-=-..|+-..++.+
T Consensus 1627 l~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1627 LSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 8765 4 56689999999999999999999999999988877643 344444444445554444433
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.08 E-value=0.026 Score=65.10 Aligned_cols=350 Identities=11% Similarity=-0.054 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCc-hhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHH
Q 048743 20 EVLLRKLESASKNHQVGEAWETFNDFQRLHGIPER-HVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAK 98 (653)
Q Consensus 20 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~ 98 (653)
..+.+....+...|++.+|.......... +.. .........+...|+ ...+...+..+.... ...+......
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~---~~~l~~~l~~lp~~~-~~~~~~l~~~ 414 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGE---LSLLEECLNALPWEV-LLENPRLVLL 414 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCC---hHHHHHHHHhCCHHH-HhcCcchHHH
Confidence 44555566777889988887755543321 110 111112223334454 445555554431110 1112223344
Q ss_pred HHHHHHhcCCCchHHHHHHHHHcCc--cC-CCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccC---
Q 048743 99 LSLSLARAQMPVPASMILRLMLGRE--NL-PCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAEL--- 172 (653)
Q Consensus 99 li~~~~~~g~~~~a~~~~~~m~~~g--~~-p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--- 172 (653)
....+...|++++|..+++...+.- .. .+.......+... ....+...|+++.+...++..
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-------------~a~~~~~~g~~~~A~~~~~~al~~ 481 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNAL-------------RAQVAINDGDPEEAERLAELALAE 481 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHH-------------HHHHHHhCCCHHHHHHHHHHHHhc
Confidence 5556678899999999998875431 11 0011111111110 001111122333332222211
Q ss_pred -CCCc----hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC---Ccc--HHHHHHHHHHHHhcCChhhhHHHHHHhhhc-
Q 048743 173 -IKPD----TMIFNLVLHACVRFGSSLKGQHIMELMSQTGV---VAD--AHSIIILAQIHEMNCQRDELKKFKCYIDQL- 241 (653)
Q Consensus 173 -~~~~----~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~---~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~- 241 (653)
...+ ....+.+...+...|+++.|...+++.....- .+. ..++..+...+...|+++.|...++.....
T Consensus 482 ~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 482 LPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 1111 23456666777889999999999988875311 111 233455666778899999999887776543
Q ss_pred ---CCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhh
Q 048743 242 ---STPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELL 318 (653)
Q Consensus 242 ---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (653)
+.+.......++..+...+...|++++|...+++.....
T Consensus 562 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~-------------------------------------- 603 (903)
T PRK04841 562 EEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL-------------------------------------- 603 (903)
T ss_pred HHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh--------------------------------------
Confidence 111111122344555666777899999999888773200
Q ss_pred HHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccH-----HHHHHHHHHc
Q 048743 319 EKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC-----SDVIDALIQL 393 (653)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-----~~li~~~~~~ 393 (653)
...+.......+..+...+...|+.+.|.+.+.+.............+ ...+..+...
T Consensus 604 -----------------~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 604 -----------------SNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred -----------------hccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 001100112244456667778999999999888875432111111101 1122444557
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048743 394 GFLEAAHDILDDMELAGHPMDS---TTYKSLLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 394 g~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
|+.+.|...+............ ..+..+..++...|++++|...+++....
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888887775442211111 11345566777888888888888877653
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.03 E-value=0.0009 Score=69.01 Aligned_cols=97 Identities=10% Similarity=-0.015 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (653)
.+|..+-.++.+.++++.|.+.|.....-. |.+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|-.-+..
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlv 596 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLV 596 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhh
Confidence 477778888889999999999999988776 8888889999999999999999999999999887 4466777777888
Q ss_pred HHHcCChHHHHHHHHHHHHc
Q 048743 425 YYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 425 ~~~~~~~~~a~~~~~~m~~~ 444 (653)
..+.|.+++|.+.+.++.+.
T Consensus 597 svdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 597 SVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhcccHHHHHHHHHHHHHh
Confidence 89999999999999988763
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.02 E-value=0.00038 Score=76.54 Aligned_cols=207 Identities=14% Similarity=0.090 Sum_probs=164.0
Q ss_pred chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcc-----HHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchh
Q 048743 176 DTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD-----AHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQ 250 (653)
Q Consensus 176 ~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (653)
+.+.|-..|.-+...++.++|.+++++.... +.|. ...|.++++.--.-|.-+...++|++..+..++..
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~---- 1531 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYT---- 1531 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHH----
Confidence 3456878888899999999999999998864 3221 12366677766677888889999999999876665
Q ss_pred HHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhH
Q 048743 251 QFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQ 330 (653)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (653)
+|..|...|.+.++.++|.++|+.|.++
T Consensus 1532 -V~~~L~~iy~k~ek~~~A~ell~~m~KK--------------------------------------------------- 1559 (1710)
T KOG1070|consen 1532 -VHLKLLGIYEKSEKNDEADELLRLMLKK--------------------------------------------------- 1559 (1710)
T ss_pred -HHHHHHHHHHHhhcchhHHHHHHHHHHH---------------------------------------------------
Confidence 4999999999999999999999999431
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048743 331 ELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG 410 (653)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 410 (653)
..-....|...+..+.+..+-+.|..++.+..+.-..........-.+..-.+.|+.+.+..+|+.....-
T Consensus 1560 ---------F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay 1630 (1710)
T KOG1070|consen 1560 ---------FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY 1630 (1710)
T ss_pred ---------hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC
Confidence 12344578899999999999999999999877654111233345556666678899999999999988753
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC
Q 048743 411 HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN 449 (653)
Q Consensus 411 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 449 (653)
+--...|+..|+.-.+.|+.+.+..+|++....++.|.
T Consensus 1631 -PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1631 -PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred -ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 33577899999999999999999999999999888775
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=0.00085 Score=69.17 Aligned_cols=216 Identities=12% Similarity=0.045 Sum_probs=163.7
Q ss_pred HHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhH
Q 048743 251 QFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQ 330 (653)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (653)
..-..+...+...|-+..|..+|+++.
T Consensus 399 q~q~~laell~slGitksAl~I~Erle----------------------------------------------------- 425 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE----------------------------------------------------- 425 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH-----------------------------------------------------
Confidence 345677788888999999999999982
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048743 331 ELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG 410 (653)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 410 (653)
.|..+|.+|+..|+..+|..+..+-.+ . +|+...|..+.+......-+++|.++++.....
T Consensus 426 ---------------mw~~vi~CY~~lg~~~kaeei~~q~le-k--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar- 486 (777)
T KOG1128|consen 426 ---------------MWDPVILCYLLLGQHGKAEEINRQELE-K--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR- 486 (777)
T ss_pred ---------------HHHHHHHHHHHhcccchHHHHHHHHhc-C--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-
Confidence 477899999999999999999888777 3 677777999999888888889999998875432
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHH
Q 048743 411 HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQE 489 (653)
Q Consensus 411 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 489 (653)
.-..+-....+.++++++.+.|+.-.+. .+.+...+.. ..| +-+.++++.|.+.|..
T Consensus 487 ------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~--G~~--------------ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 487 ------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGL--GCA--------------ALQLEKEQAAVKAFHR 544 (777)
T ss_pred ------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhc--cHH--------------HHHHhhhHHHHHHHHH
Confidence 1111111223468899999998877652 2333322111 111 1236788999999998
Q ss_pred HHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 048743 490 MREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563 (653)
Q Consensus 490 m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~ 563 (653)
..... | +...||.+-.+|.+.|+-.+|...+++..+.+ .-+-..|...+....+.|.+++|.+.+..+...
T Consensus 545 cvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 545 CVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 88754 6 67789999999999999999999999998876 445566777888889999999999999888654
No 109
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.02 E-value=5.8e-06 Score=49.31 Aligned_cols=31 Identities=13% Similarity=0.411 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 048743 178 MIFNLVLHACVRFGSSLKGQHIMELMSQTGV 208 (653)
Q Consensus 178 ~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~ 208 (653)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999875
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.95 E-value=0.0048 Score=67.48 Aligned_cols=170 Identities=11% Similarity=0.044 Sum_probs=124.5
Q ss_pred CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHH-HHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHH
Q 048743 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSII-ILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQF 252 (653)
Q Consensus 174 ~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (653)
+.+...+-.|+..+...+++++|.++.+.-.+. .|+...+- .+...+...++.+.+..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------ 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------ 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------------
Confidence 345668999999999999999999999966654 67766633 222244455554333332
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHH
Q 048743 253 YESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQEL 332 (653)
Q Consensus 253 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (653)
.+++.+....++..+..+...|..
T Consensus 88 --~~l~~~~~~~~~~~ve~~~~~i~~------------------------------------------------------ 111 (906)
T PRK14720 88 --NLIDSFSQNLKWAIVEHICDKILL------------------------------------------------------ 111 (906)
T ss_pred --hhhhhcccccchhHHHHHHHHHHh------------------------------------------------------
Confidence 344444444555444444444411
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 048743 333 VLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHP 412 (653)
Q Consensus 333 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 412 (653)
..-+...+..+..+|-+.|+.++|..+++++.+.. +.|+.+.|.+...|+.. ++++|.+++.+....
T Consensus 112 -------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--- 178 (906)
T PRK14720 112 -------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--- 178 (906)
T ss_pred -------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence 11222366788999999999999999999999998 88999999999999999 999999999887764
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048743 413 MDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 413 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
+....++.++++++.++...
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhc
Confidence 77778999999999999874
No 111
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.95 E-value=9.4e-06 Score=48.39 Aligned_cols=31 Identities=32% Similarity=0.468 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 048743 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKI 530 (653)
Q Consensus 500 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 530 (653)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3789999999999999999999999998774
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.93 E-value=0.0018 Score=61.09 Aligned_cols=85 Identities=13% Similarity=0.035 Sum_probs=64.2
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcccH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHH
Q 048743 358 GKNSELSWLLLSIKKEHHSFGESTLC-----------------SDVIDALIQLGFLEAAHDILDDMELAGH--PMDSTTY 418 (653)
Q Consensus 358 ~~~~~a~~~~~~m~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~ 418 (653)
|+.++|.+.|+.+.... |.+...+ ..+...|.+.|++++|...+.+..+... +.....+
T Consensus 129 ~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~ 206 (235)
T TIGR03302 129 TAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEAL 206 (235)
T ss_pred HHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHH
Confidence 56777777777777665 4443322 1345667888999999999999987532 2245788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc
Q 048743 419 KSLLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 419 ~~li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
..+..++.+.|++++|...++.+...
T Consensus 207 ~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 207 ARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 89999999999999999999988764
No 113
>PLN02789 farnesyltranstransferase
Probab=97.89 E-value=0.011 Score=57.81 Aligned_cols=65 Identities=9% Similarity=-0.065 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048743 361 SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV 428 (653)
Q Consensus 361 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 428 (653)
+++..+++++.+.. +.+.++|+...-++.+.|+++++++.++++.+.... |...|+.....+.+.
T Consensus 125 ~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 125 NKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 56677777777777 777777888777777888888888888888776543 566666655554443
No 114
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.0046 Score=62.29 Aligned_cols=228 Identities=10% Similarity=0.000 Sum_probs=162.0
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 048743 354 YKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE 433 (653)
Q Consensus 354 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 433 (653)
+.+.|++.+|.-.|+...++. |.+...|--|-......++-..|+..+++..+... -|......|.-.|...|.-.+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHH
Confidence 568999999999999999998 88889999999999999999999999999988532 366788888889999999999
Q ss_pred HHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHH-HccCCCCHHHHHHHHHHHHcC
Q 048743 434 AEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR-EEAALSTIYKLNSSIYFFCKG 512 (653)
Q Consensus 434 a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~y~~li~~~~~~ 512 (653)
|+..|+.-.... |.-. .+.. .-..+... ..+.+.....+....++|-++. ..+..+|..++..|--.|--.
T Consensus 372 Al~~L~~Wi~~~--p~y~-~l~~-a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 372 ALKMLDKWIRNK--PKYV-HLVS-AGENEDFE----NTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHhC--ccch-hccc-cCcccccc----CCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 999999887643 1100 0000 00000000 0000111233445556665555 445345666777777778889
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHH
Q 048743 513 KMIGDALKIYRRMQEMKIRPT-VETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFER 591 (653)
Q Consensus 513 g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~ 591 (653)
|++++|.+.|+..+.. +|+ ..+||.|-..++...+..+|+..++..++. .-++ -..=|| |--.|...|.+++
T Consensus 444 ~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~y--VR~RyN-lgIS~mNlG~ykE 516 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGY--VRVRYN-LGISCMNLGAYKE 516 (579)
T ss_pred hHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCe--eeeehh-hhhhhhhhhhHHH
Confidence 9999999999988774 565 567999999999999999999999887643 1111 122355 5558999999999
Q ss_pred HHHHHHHH
Q 048743 592 VMEVIGYM 599 (653)
Q Consensus 592 a~~~~~~m 599 (653)
|.+.|-+.
T Consensus 517 A~~hlL~A 524 (579)
T KOG1125|consen 517 AVKHLLEA 524 (579)
T ss_pred HHHHHHHH
Confidence 98887544
No 115
>PLN02789 farnesyltranstransferase
Probab=97.87 E-value=0.021 Score=55.78 Aligned_cols=215 Identities=10% Similarity=-0.044 Sum_probs=143.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG-FLEAAHDILDDMELAGHPMDSTTYKSLLTA 424 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (653)
++..+-..+...+..++|+.+..++.+.. |.+..+|+.--..+...| ++++++..++++.+... .+..+|+..-..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHH
Confidence 45566666777889999999999999988 777777887777777777 68999999999987643 366678776666
Q ss_pred HHHcCCh--HHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHH
Q 048743 425 YYKVKMF--REAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502 (653)
Q Consensus 425 ~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y 502 (653)
+.+.|+. ++++.+++.+.+. .|..+..-.....+. ...|+++++++.++++.+.+.. |...|
T Consensus 116 l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l-------------~~l~~~~eeL~~~~~~I~~d~~-N~sAW 179 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVL-------------RTLGGWEDELEYCHQLLEEDVR-NNSAW 179 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHH-------------HHhhhHHHHHHHHHHHHHHCCC-chhHH
Confidence 6666653 6778888888763 455422111111111 1357788999999999887632 56667
Q ss_pred HHHHHHHHcC---CC----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHhhhCCCcc
Q 048743 503 NSSIYFFCKG---KM----IGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL----EMYRDITILWGDIKRNIESGVLAV 571 (653)
Q Consensus 503 ~~li~~~~~~---g~----~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~p 571 (653)
+.....+.+. |. .++.+++..+++... +-|...|+.+...+... +...+|.+.+.+... .-..
T Consensus 180 ~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~-----~~~~ 253 (320)
T PLN02789 180 NQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS-----KDSN 253 (320)
T ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc-----ccCC
Confidence 7766655544 22 246677776766642 22556677777777663 334567777766541 1233
Q ss_pred CHHHHHHHHHHHHh
Q 048743 572 SRDLYETLLLNFLQ 585 (653)
Q Consensus 572 ~~~~y~~li~~~~~ 585 (653)
+......|++.|+.
T Consensus 254 s~~al~~l~d~~~~ 267 (320)
T PLN02789 254 HVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHh
Confidence 56677778888775
No 116
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.86 E-value=0.025 Score=56.82 Aligned_cols=113 Identities=14% Similarity=0.171 Sum_probs=96.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 048743 338 GKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHH-SFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST 416 (653)
Q Consensus 338 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 416 (653)
.+.+.+......+++.+....+++.+..++.+.+.... ...-..|..++|+.|.+.|..+.++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 45566778888999999999999999999998887642 21223446799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 417 TYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 417 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
|+|.||+.+.+.|++..|.++...|...+...+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~ 173 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNP 173 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCc
Confidence 9999999999999999999999999877665554
No 117
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.038 Score=53.50 Aligned_cols=159 Identities=11% Similarity=0.008 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (653)
.....+-+.+...|+.++|+..|++...-+ |.+..........+.+.|+.+....+...+.... .-+...|-.-...
T Consensus 233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 233 HLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred HHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 344555566666666666666666655544 3333322222233345555555555555554321 0122222222223
Q ss_pred HHHcCChHHHHHHHHHHHHcCCccCchhhHHH-HhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHHH
Q 048743 425 YYKVKMFREAEALLKQMRKSCLVQNLSCEMVV-SERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKL 502 (653)
Q Consensus 425 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y 502 (653)
+....+++.|+.+-++-.+. .|...-.+++ ...+. ..++.++|.-.|+...... | +..+|
T Consensus 310 l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~--------------~~~R~~~A~IaFR~Aq~La--p~rL~~Y 371 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLI--------------ALERHTQAVIAFRTAQMLA--PYRLEIY 371 (564)
T ss_pred hhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHH--------------hccchHHHHHHHHHHHhcc--hhhHHHH
Confidence 33445555555555555442 2222111111 11111 2455666666665544322 3 55566
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q 048743 503 NSSIYFFCKGKMIGDALKIYRR 524 (653)
Q Consensus 503 ~~li~~~~~~g~~~~a~~~~~~ 524 (653)
..|+.+|...|++.+|.-+-+.
T Consensus 372 ~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 372 RGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHHHHHHHhhchHHHHHHHHHH
Confidence 6666666666666666554443
No 118
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.80 E-value=0.0003 Score=54.70 Aligned_cols=91 Identities=18% Similarity=0.163 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHcCcc-CCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccC
Q 048743 94 DLLAKLSLSLARAQMPVPASMILRLMLGREN-LPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAEL 172 (653)
Q Consensus 94 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 172 (653)
.|...-|..+...+++.....+|+.+++.|+ .|+..+|+.++.++++...+.....+.+-++...+.++-. ..
T Consensus 26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~------~~ 99 (120)
T PF08579_consen 26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS------NK 99 (120)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH------hc
Confidence 3445567777778999999999999999999 8999999999999998887777777777777777765532 55
Q ss_pred CCCchhhHHHHHHHHHhc
Q 048743 173 IKPDTMIFNLVLHACVRF 190 (653)
Q Consensus 173 ~~~~~~~yn~li~~~~~~ 190 (653)
++|+..+||.++..+.+.
T Consensus 100 lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 100 LKPNDETYNIVLGSLLKG 117 (120)
T ss_pred cCCcHHHHHHHHHHHHHh
Confidence 899999999999987653
No 119
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.79 E-value=0.00028 Score=54.82 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=70.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 048743 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG--------FLEAAHDILDDMELAGHPMDSTTYK 419 (653)
Q Consensus 348 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~~~ 419 (653)
...|..|...+++...-.+|+.+++.+...|+..+|+.++.+.+++. ++-..+.+|++|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 46677777889999999999999999965888888999999999874 2446789999999999999999999
Q ss_pred HHHHHHHHc
Q 048743 420 SLLTAYYKV 428 (653)
Q Consensus 420 ~li~~~~~~ 428 (653)
.++..+.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999988763
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.79 E-value=0.0035 Score=56.89 Aligned_cols=165 Identities=16% Similarity=0.043 Sum_probs=125.5
Q ss_pred CccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchh
Q 048743 209 VADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKL 288 (653)
Q Consensus 209 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 288 (653)
.|+......+-..+--.|+-+....+......... .|..+.+.++....+.|++..|...|.+..
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~----~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~----------- 127 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYP----KDRELLAAQGKNQIRNGNFGEAVSVLRKAA----------- 127 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhccCc----ccHHHHHHHHHHHHHhcchHHHHHHHHHHh-----------
Confidence 44433334444555556666666665555433221 233356678888899999999999999882
Q ss_pred hhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048743 289 RQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLL 368 (653)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 368 (653)
..-++|...|+.+--+|.+.|++++|..-|.
T Consensus 128 -------------------------------------------------~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~ 158 (257)
T COG5010 128 -------------------------------------------------RLAPTDWEAWNLLGAALDQLGRFDEARRAYR 158 (257)
T ss_pred -------------------------------------------------ccCCCChhhhhHHHHHHHHccChhHHHHHHH
Confidence 2345788899999999999999999999999
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 048743 369 SIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440 (653)
Q Consensus 369 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 440 (653)
+..+-. +.+...+|.|...|.-.|+.+.|..++......+. -|...-..+.-+....|++++|..+-..
T Consensus 159 qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 159 QALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 988876 66677799999999999999999999999887643 3677778888889999999999877543
No 121
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.0091 Score=59.70 Aligned_cols=191 Identities=12% Similarity=0.035 Sum_probs=97.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHH
Q 048743 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~ 462 (653)
+..+.++.-+..+++.|.+-+....+.. -+..-++..-.+|...|.+.+.......-.+.|-....-+.++...+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r- 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR- 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH-
Confidence 5566677777777778887777776654 3444556666677777777777776666655553332212221111111
Q ss_pred HhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHH-HHHHH
Q 048743 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET-FYYLV 541 (653)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li 541 (653)
+...|.+.++.+.+...|++.......|+.. .+....++++.......-. .|.... ...=.
T Consensus 304 -------~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kG 365 (539)
T KOG0548|consen 304 -------LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYI--NPEKAEEEREKG 365 (539)
T ss_pred -------hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHH
Confidence 2235566677777877777766544444332 1222233333333332221 122110 11113
Q ss_pred HHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 048743 542 YGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599 (653)
Q Consensus 542 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m 599 (653)
..+.+.|++..|+..+.++... -+-|...|....-+|.+.|.+.+|+.=.+.-
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr-----~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKR-----DPEDARLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhc-----CCchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445555555555555554421 1334455555555555555555555544433
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.76 E-value=0.015 Score=63.77 Aligned_cols=162 Identities=15% Similarity=0.072 Sum_probs=102.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048743 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV 428 (653)
Q Consensus 349 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 428 (653)
.++.......++.-+..+...|... +.+...+-.+..+|-+.|+.++|..+++++.+.. +-|+.+.|.+...|...
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 4445555555664455555555543 3444467788888888899999999999988876 44788888888888888
Q ss_pred CChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 048743 429 KMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYF 508 (653)
Q Consensus 429 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~ 508 (653)
+.++|++++......-+ ...++..+..+|.++.... |
T Consensus 164 -dL~KA~~m~~KAV~~~i-----------------------------~~kq~~~~~e~W~k~~~~~--~----------- 200 (906)
T PRK14720 164 -DKEKAITYLKKAIYRFI-----------------------------KKKQYVGIEEIWSKLVHYN--S----------- 200 (906)
T ss_pred -hHHHHHHHHHHHHHHHH-----------------------------hhhcchHHHHHHHHHHhcC--c-----------
Confidence 88899888887766411 1346666666666666643 2
Q ss_pred HHcCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 509 FCKGKMIGDALKIYRRMQEM-KIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 509 ~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
.+.+.-+.+.+.+... |..--..++-.+-..|...++++++..++..+.
T Consensus 201 ----~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL 250 (906)
T PRK14720 201 ----DDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL 250 (906)
T ss_pred ----ccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 1223333333333332 333334455555566666667777777776665
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.70 E-value=0.0075 Score=54.64 Aligned_cols=105 Identities=11% Similarity=0.055 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHH-HHcCC--HHHHHHHHHHHHHCCCCCCHHHH
Q 048743 342 HSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDAL-IQLGF--LEAAHDILDDMELAGHPMDSTTY 418 (653)
Q Consensus 342 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~-~~~g~--~~~a~~~~~~m~~~g~~p~~~~~ 418 (653)
.+...|..+-..|...|++++|...|++..+.. |.+...+..+..++ ...|+ .++|.+++++..+.... +..++
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al 147 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTAL 147 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHH
Confidence 355678888888888999999999999888877 77777788877764 56676 58899999988876433 67788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 419 KSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 419 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
..+..++...|++++|...|+.+.+. ..|+.
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~ 178 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDL-NSPRV 178 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCc
Confidence 88888888899999999999988875 34443
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.69 E-value=0.0024 Score=57.82 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=73.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccc
Q 048743 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTD 472 (653)
Q Consensus 393 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~ 472 (653)
.++.+++...++...+.. +.|...|..+-..|...|++++|...|+...+ +.|+........... +
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~a--L--------- 117 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATV--L--------- 117 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH--H---------
Confidence 445555665565555442 34666666666677777777777777766655 334431111110000 0
Q ss_pred cccccCC--HHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHH
Q 048743 473 TSSLMDK--SDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537 (653)
Q Consensus 473 ~~~~~~~--~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 537 (653)
|...|+ .++|.+++++..+.+ | +...+..+...+.+.|++++|+..|+++.+.. +|+..-+
T Consensus 118 -~~~~g~~~~~~A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 118 -YYQAGQHMTPQTREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred -HHhcCCCCcHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 111333 366666666666554 4 66677778888888888888888888887752 4444433
No 125
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.69 E-value=0.12 Score=55.92 Aligned_cols=111 Identities=14% Similarity=0.052 Sum_probs=75.8
Q ss_pred ccccccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCC-chhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCC
Q 048743 11 KLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPE-RHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKAD 89 (653)
Q Consensus 11 ~l~~~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 89 (653)
+......+.+........|++..+|+.|..+.-...+ ..|- .-.+|++-++..... .+..-+|+.-|+...+..|
T Consensus 518 AFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q--ka~a~~~k~nW~~rG~yyLe-a~n~h~aV~~fQsALR~dP- 593 (1238)
T KOG1127|consen 518 AFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ--KAPAFACKENWVQRGPYYLE-AHNLHGAVCEFQSALRTDP- 593 (1238)
T ss_pred HhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh--hchHHHHHhhhhhccccccC-ccchhhHHHHHHHHhcCCc-
Confidence 4556667777888888888888888888887322222 1121 224566655543332 2235677777777665544
Q ss_pred chhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCc
Q 048743 90 LLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCS 128 (653)
Q Consensus 90 ~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 128 (653)
-|...|..+..+|.++|++..|+.+|.+.... .|+.
T Consensus 594 -kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s 629 (1238)
T KOG1127|consen 594 -KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS 629 (1238)
T ss_pred -hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh
Confidence 38999999999999999999999999887654 4544
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.69 E-value=0.0036 Score=56.82 Aligned_cols=166 Identities=16% Similarity=0.049 Sum_probs=118.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048743 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYK 419 (653)
Q Consensus 340 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 419 (653)
..|+......+-..+.-.|+-+....+........ +.+....+..+....+.|++..|...|++.... -++|..+|+
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~ 138 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWN 138 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhh
Confidence 44533322556666777888888888877765554 566566777899999999999999999998764 467999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC-CccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCC
Q 048743 420 SLLTAYYKVKMFREAEALLKQMRKSC-LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST 498 (653)
Q Consensus 420 ~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 498 (653)
.+--+|.+.|+.++|..-|.+..+.. -.|...+++.+. |.-.|+.+.|..++......+. -|
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms----------------~~L~gd~~~A~~lll~a~l~~~-ad 201 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMS----------------LLLRGDLEDAETLLLPAYLSPA-AD 201 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHH----------------HHHcCCHHHHHHHHHHHHhCCC-Cc
Confidence 99999999999999999999888732 233322222222 1226788888888877776542 16
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 048743 499 IYKLNSSIYFFCKGKMIGDALKIYRRM 525 (653)
Q Consensus 499 ~~~y~~li~~~~~~g~~~~a~~~~~~m 525 (653)
..+-..+.......|++++|.++...-
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 666677777778888888887776543
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.68 E-value=0.023 Score=61.56 Aligned_cols=134 Identities=9% Similarity=-0.002 Sum_probs=96.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048743 341 LHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS 420 (653)
Q Consensus 341 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 420 (653)
..+...+-.|-....+.|.+++|..+++...+.. |.+......+...+.+.+++++|+...++...... -+......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHH
Confidence 3456677788888888899999999999888877 77777788888888899999999999988887642 25566677
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHH
Q 048743 421 LLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE 492 (653)
Q Consensus 421 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 492 (653)
+-.++.+.|++++|..+|++.... .|+.....+..... +.+.|+.++|...|+...+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~-------------l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQS-------------LTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHH
Confidence 778888889999999999988873 34431122111110 1235666666666666554
No 128
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.0041 Score=62.62 Aligned_cols=230 Identities=10% Similarity=-0.078 Sum_probs=160.9
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCH
Q 048743 187 CVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDI 266 (653)
Q Consensus 187 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 266 (653)
+.++|++.+|.-.|+...+.. .-+...|..|....+..++-..|...+++..+..+.+.. +.-+|--.|...|.-
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle----aLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE----ALMALAVSYTNEGLQ 369 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH----HHHHHHHHHhhhhhH
Confidence 567999999999999988874 224556889999999999999999999888887655443 577888899999999
Q ss_pred HHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHH-HHhcCCCCCCHH
Q 048743 267 DAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELV-LFRNGKLLHSNR 345 (653)
Q Consensus 267 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~ 345 (653)
..|++.|+......-...+.. ........+.. ..+..... -......++ .....+..+|..
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~------------~a~~~~~~~~~-----~s~~~~~~-l~~i~~~fLeaa~~~~~~~Dpd 431 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLV------------SAGENEDFENT-----KSFLDSSH-LAHIQELFLEAARQLPTKIDPD 431 (579)
T ss_pred HHHHHHHHHHHHhCccchhcc------------ccCccccccCC-----cCCCCHHH-HHHHHHHHHHHHHhCCCCCChh
Confidence 999999998743221000000 00000000000 00000000 001111222 334555557777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDS-TTYKSLLTA 424 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~ 424 (653)
++..|--.|--.|++++|...|+...... |.|..+||-|-..++...+.++|...|.+.++- +|+- .....|--+
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGIS 507 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhh
Confidence 78888888889999999999999999988 999999999999999999999999999999874 4543 344445557
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 048743 425 YYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 425 ~~~~~~~~~a~~~~~~m~~ 443 (653)
|...|.+++|...|-....
T Consensus 508 ~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 508 CMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred hhhhhhHHHHHHHHHHHHH
Confidence 8999999999988866543
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.64 E-value=0.0036 Score=53.50 Aligned_cols=99 Identities=6% Similarity=-0.152 Sum_probs=87.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048743 347 MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426 (653)
Q Consensus 347 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (653)
+..+-..+...|++++|...|+...... |.+...|..+..++.+.|++++|...|+...... +.+..++..+-.++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 5556778889999999999999999887 8888889999999999999999999999999854 457889999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCccCc
Q 048743 427 KVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 427 ~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
..|++++|...|+...+ +.|+.
T Consensus 104 ~~g~~~eAi~~~~~Al~--~~p~~ 125 (144)
T PRK15359 104 MMGEPGLAREAFQTAIK--MSYAD 125 (144)
T ss_pred HcCCHHHHHHHHHHHHH--hCCCC
Confidence 99999999999999987 45664
No 130
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.63 E-value=0.00078 Score=67.34 Aligned_cols=115 Identities=11% Similarity=0.027 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHH
Q 048743 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEM--KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD 574 (653)
Q Consensus 497 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~ 574 (653)
.+......++..+....+++.+.+++.+.+.. ....-..|..++|+.|.+.|..+.++.++..= ...|+-||..
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~----~~yGiF~D~~ 139 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR----LQYGIFPDNF 139 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh----hhcccCCChh
Confidence 36667788888888888899999999988874 33333456679999999999999999888543 3679999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048743 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEF 615 (653)
Q Consensus 575 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 615 (653)
+||.|++.+.+.|++..|.++..+|...+...+..|+...+
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l 180 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALAL 180 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 99999999999999999999999998888888888887766
No 131
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.61 E-value=0.13 Score=54.10 Aligned_cols=390 Identities=11% Similarity=-0.015 Sum_probs=216.0
Q ss_pred CCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCC--Ccccchh
Q 048743 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLST--PFAHHYQ 250 (653)
Q Consensus 173 ~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~ 250 (653)
+.-|...|..|.=+..+.|+++.+.+.|++.... ..-....|..+--.+...|.-..|..+++.-..... +++.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s--- 394 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS--- 394 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch---
Confidence 4567888999999999999999999999987754 233445577777788888888888888887766542 2221
Q ss_pred HHHHHHHHhh-hccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhh
Q 048743 251 QFYESLLSLH-FKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGK 329 (653)
Q Consensus 251 ~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (653)
.+-..-..| -+.+.+++++.+-.+.....+ +
T Consensus 395 -~~Lmasklc~e~l~~~eegldYA~kai~~~~--------------------------~--------------------- 426 (799)
T KOG4162|consen 395 -VLLMASKLCIERLKLVEEGLDYAQKAISLLG--------------------------G--------------------- 426 (799)
T ss_pred -HHHHHHHHHHhchhhhhhHHHHHHHHHHHhh--------------------------h---------------------
Confidence 122222222 234667777776665521000 0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHH-----------hcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHH
Q 048743 330 QELVLFRNGKLLHSNRAMAKLINGYK-----------KHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEA 398 (653)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~~-----------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 398 (653)
....+.| ..|-.+--+|. +.....++.+.+++..+.+ +.|+.+.--+---|+..++++.
T Consensus 427 ------~~~~l~~--~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d--~~dp~~if~lalq~A~~R~l~s 496 (799)
T KOG4162|consen 427 ------QRSHLKP--RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD--PTDPLVIFYLALQYAEQRQLTS 496 (799)
T ss_pred ------hhhhhhh--hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHhHHH
Confidence 0000111 11212222221 1112345666777776666 4443333344444666777888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCccCc------------hhhHHHHhhHH--HH
Q 048743 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNL------------SCEMVVSERFS--EV 463 (653)
Q Consensus 399 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~------------~~~~~~~~~l~--~~ 463 (653)
|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+..... |..-.. ...-.+-.|.+ .+
T Consensus 497 Al~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~ 576 (799)
T KOG4162|consen 497 ALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL 576 (799)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH
Confidence 8877777777655567777777777777777777777777665442 110000 00001111111 11
Q ss_pred hhh---------cccccc----cccccCCHHHHH-------HHHH-HHHHcc---------CCC--C------HHHHHHH
Q 048743 464 ADK---------SASFTD----TSSLMDKSDLAE-------SLIQ-EMREEA---------ALS--T------IYKLNSS 505 (653)
Q Consensus 464 ~~~---------~~~~~~----~~~~~~~~~~a~-------~~~~-~m~~~~---------~~p--~------~~~y~~l 505 (653)
.+. .+...+ +-....+..++. .+.. .....| ..| + ...|...
T Consensus 577 we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwlla 656 (799)
T KOG4162|consen 577 WEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLA 656 (799)
T ss_pred HHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHH
Confidence 110 000000 000011111111 1111 000111 112 1 2245566
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHHH
Q 048743 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV-SRDLYETLLLNFL 584 (653)
Q Consensus 506 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p-~~~~y~~li~~~~ 584 (653)
...+.+.+..++|...+.+.... .......|...-..+...|.+.+|.+.|.... .+.| ++....++...+.
T Consensus 657 a~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al------~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 657 ADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL------ALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH------hcCCCCcHHHHHHHHHHH
Confidence 67778888888888887776543 23334455555566778888999998887765 4555 4456778888899
Q ss_pred hCCCHHHHHH--HHHHHHhCCC-CCCHHhHHHHHHHhhhhhHHhhhhhHH
Q 048743 585 QGGYFERVME--VIGYMKKQNM-YVDKLMYKSEFLKHHKHLYRRLKVSNA 631 (653)
Q Consensus 585 ~~g~~~~a~~--~~~~m~~~g~-~p~~~t~~~l~~~~~~~~~~~~~~~~~ 631 (653)
+.|+..-|.. ++.++.+.+- .|+.+-|..-+.+..|+.++|-+-+..
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 9998888888 8888876652 233444444445666777766544433
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.56 E-value=0.043 Score=59.53 Aligned_cols=209 Identities=9% Similarity=-0.025 Sum_probs=140.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 048743 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMD-STTYKSLLTAYYKVK 429 (653)
Q Consensus 351 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~ 429 (653)
+....+.....+++.-.....+.. +.+...+-.|.....+.|..++|..+++...+. .|+ ......+..++.+.+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~ 134 (694)
T PRK15179 59 LERHAAVHKPAAALPELLDYVRRY--PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQ 134 (694)
T ss_pred HHHhhhhcchHhhHHHHHHHHHhc--cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhc
Confidence 333333334444444444444444 666777889999999999999999999999875 455 456677888999999
Q ss_pred ChHHHHHHHHHHHHcCCccCchh-hHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHH
Q 048743 430 MFREAEALLKQMRKSCLVQNLSC-EMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKLNSSIY 507 (653)
Q Consensus 430 ~~~~a~~~~~~m~~~~~~p~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~ 507 (653)
++++|+...+...+. .|+... ......++. ..|+.++|..+|++....+ | +..++..+-.
T Consensus 135 ~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~--------------~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~ 196 (694)
T PRK15179 135 GIEAGRAEIELYFSG--GSSSAREILLEAKSWD--------------EIGQSEQADACFERLSRQH--PEFENGYVGWAQ 196 (694)
T ss_pred cHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHH--------------HhcchHHHHHHHHHHHhcC--CCcHHHHHHHHH
Confidence 999999999999874 577632 222232222 3789999999999999844 5 4778888888
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCC
Q 048743 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG 587 (653)
Q Consensus 508 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g 587 (653)
++-+.|+.++|...|++..+. ..|....|+.++. ++..-..+++.+.-...-.|..........+|.-|.+..
T Consensus 197 ~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 197 SLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 999999999999999998874 3455566665543 222223333333211122344555666777887777654
Q ss_pred C
Q 048743 588 Y 588 (653)
Q Consensus 588 ~ 588 (653)
.
T Consensus 270 ~ 270 (694)
T PRK15179 270 N 270 (694)
T ss_pred c
Confidence 4
No 133
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.53 E-value=0.0044 Score=52.90 Aligned_cols=120 Identities=11% Similarity=-0.034 Sum_probs=92.6
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 048743 484 ESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563 (653)
Q Consensus 484 ~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~ 563 (653)
+.+|++..+.+ |+ .+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.
T Consensus 13 ~~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34555555433 44 35567778889999999999999988753 336778889999999999999999999988721
Q ss_pred hhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048743 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEF 615 (653)
Q Consensus 564 ~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 615 (653)
-+.+...+..+..++.+.|++++|...|+...+ +.|+...|..+.
T Consensus 88 -----~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~~~ 132 (144)
T PRK15359 88 -----DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWSEIR 132 (144)
T ss_pred -----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHH
Confidence 234677888899999999999999999999884 457766665444
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.49 E-value=0.0046 Score=52.31 Aligned_cols=110 Identities=11% Similarity=0.046 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYE 577 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~ 577 (653)
+......+...+...|++++|.+.|+.....+ +.+...+..+...+...|++++|..+++...+. .+.+...+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~ 89 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-----DPDDPRPYF 89 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCChHHHH
Confidence 44556777788889999999999999988754 336677888888999999999999999877522 234567777
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048743 578 TLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEF 615 (653)
Q Consensus 578 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 615 (653)
.+...+...|++++|.+.|++..+. .|+...+.-+.
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 125 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEI--CGENPEYSELK 125 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHHH
Confidence 7888999999999999999988854 47766655444
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.076 Score=48.16 Aligned_cols=81 Identities=9% Similarity=-0.026 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 048743 478 DKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556 (653)
Q Consensus 478 ~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~ 556 (653)
|+.++|.++++.+.+.+ | |..+|--=+-..-..|+.-+|++-+.+..+. +.-|...|.-+-..|...|+++.|...
T Consensus 100 ~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 34444444444444333 2 3333333333333344444444444444332 333455555555555555555555555
Q ss_pred HHHHH
Q 048743 557 WGDIK 561 (653)
Q Consensus 557 ~~~~~ 561 (653)
++++.
T Consensus 177 lEE~l 181 (289)
T KOG3060|consen 177 LEELL 181 (289)
T ss_pred HHHHH
Confidence 55443
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.48 E-value=0.0037 Score=62.33 Aligned_cols=114 Identities=14% Similarity=0.078 Sum_probs=93.4
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 048743 476 LMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITI 555 (653)
Q Consensus 476 ~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 555 (653)
..++++.|..+|+++.+.. |++. -.+++.+...++-.+|.+++++..... +-+...+..-..-|...++.+.|..
T Consensus 181 ~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred hcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 4678999999999999876 6544 458888888889999999999998652 2355556666667889999999999
Q ss_pred HHHHHHHHhhhCCCcc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 556 LWGDIKRNIESGVLAV-SRDLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 556 ~~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
+.+.+. ...| +..+|..|..+|...|++++|+..++.+.
T Consensus 256 iAk~av------~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 256 IAKKAV------ELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHH------HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 998886 4555 45589999999999999999999999886
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.48 E-value=0.003 Score=63.00 Aligned_cols=125 Identities=20% Similarity=0.101 Sum_probs=100.8
Q ss_pred HHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhH
Q 048743 251 QFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQ 330 (653)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (653)
+.-.+|+..+...++++.|..+|+++.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~---------------------------------------------------- 197 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRE---------------------------------------------------- 197 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHh----------------------------------------------------
Confidence 3445666677778999999999999932
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048743 331 ELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG 410 (653)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 410 (653)
..|+. ...+...+...++-.+|.+++.+..... |.+......-...|.+.++.+.|+.+.+++.+.
T Consensus 198 ---------~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l- 263 (395)
T PF09295_consen 198 ---------RDPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSKKKYELALEIAKKAVEL- 263 (395)
T ss_pred ---------cCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence 12443 3457777878888899999999998776 667666777778899999999999999999885
Q ss_pred CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048743 411 HPMD-STTYKSLLTAYYKVKMFREAEALLKQMR 442 (653)
Q Consensus 411 ~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 442 (653)
.|+ ..+|..|..+|.+.|+++.|+..++.+-
T Consensus 264 -sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 264 -SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred -CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 354 5599999999999999999999988765
No 138
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.44 E-value=0.27 Score=53.41 Aligned_cols=183 Identities=13% Similarity=-0.123 Sum_probs=109.6
Q ss_pred chhHHHHHHHHhhhhcCCCC-chhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchH
Q 048743 34 QVGEAWETFNDFQRLHGIPE-RHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPA 112 (653)
Q Consensus 34 ~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a 112 (653)
+...|...|-...+. .++ ...|..|-.-++...+ +.+|..-|.+...-++. +..........|++..+++.|
T Consensus 473 ~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~D---m~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDD---MKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHHH
Confidence 466666666555551 222 2367777777766554 78888888887554443 777888889999999999999
Q ss_pred HHHHHHHHcCccCCCc-hhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHhcC
Q 048743 113 SMILRLMLGRENLPCS-DLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFG 191 (653)
Q Consensus 113 ~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g 191 (653)
..+.-.--+ ..|-. ..++.+ ..|+-.....+ ..+.+..++..+ +.-+.|...|..|..+|.+.|
T Consensus 546 ~~I~l~~~q--ka~a~~~k~nW~-----~rG~yyLea~n-------~h~aV~~fQsAL-R~dPkD~n~W~gLGeAY~~sG 610 (1238)
T KOG1127|consen 546 FEICLRAAQ--KAPAFACKENWV-----QRGPYYLEAHN-------LHGAVCEFQSAL-RTDPKDYNLWLGLGEAYPESG 610 (1238)
T ss_pred HHHHHHHhh--hchHHHHHhhhh-----hccccccCccc-------hhhHHHHHHHHh-cCCchhHHHHHHHHHHHHhcC
Confidence 998322222 11111 112211 12211111111 111111111111 223457788999999999999
Q ss_pred ChhhHHHHHHHHHhcCCCccHHHHHH--HHHHHHhcCChhhhHHHHHHhhhc
Q 048743 192 SSLKGQHIMELMSQTGVVADAHSIII--LAQIHEMNCQRDELKKFKCYIDQL 241 (653)
Q Consensus 192 ~~~~a~~l~~~m~~~g~~p~~~t~~~--ll~~~~~~g~~~~a~~~~~~~~~~ 241 (653)
++..|.++|..... +.|+.. |.. ....-+..|...++...+..+...
T Consensus 611 ry~~AlKvF~kAs~--LrP~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 611 RYSHALKVFTKASL--LRPLSK-YGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred ceehHHHhhhhhHh--cCcHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999998775 356543 332 222345678899988888877664
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.43 E-value=0.0029 Score=53.59 Aligned_cols=106 Identities=14% Similarity=0.003 Sum_probs=88.7
Q ss_pred CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048743 340 LLHSN-RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTY 418 (653)
Q Consensus 340 ~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 418 (653)
..|+. .....+...+...|++++|...|+.....+ |.+...|..+...+.+.|+++.|..+++...+.+ +.+..++
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 88 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPY 88 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHH
Confidence 44543 445677788889999999999999998877 7777889999999999999999999999988764 4467788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 419 KSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 419 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
..+-..+...|++++|...|+...+. .|+.
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 118 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIEI--CGEN 118 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--cccc
Confidence 88888999999999999999998874 4553
No 140
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.41 E-value=0.18 Score=50.84 Aligned_cols=175 Identities=11% Similarity=0.017 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 048743 360 NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM-DSTTYKSLLTAYYKVKMFREAEALL 438 (653)
Q Consensus 360 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~ 438 (653)
.+.....+.++...-...++.. |...|+.--+..-+..|..+|.+..+.+..+ ++..++++|.-||. ++.+-|..+|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv-~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLV-YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCcee-hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 5566667777666554556655 9999999999999999999999999988887 77788888877665 7789999999
Q ss_pred HHHHHc-CCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHcCCCH
Q 048743 439 KQMRKS-CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS--TIYKLNSSIYFFCKGKMI 515 (653)
Q Consensus 439 ~~m~~~-~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~y~~li~~~~~~g~~ 515 (653)
+.-.+. |-.|- +..-.. +.....++-..+..+|++....++.| ...+|..+|+-=..-|++
T Consensus 425 eLGLkkf~d~p~--yv~~Yl--------------dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 425 ELGLKKFGDSPE--YVLKYL--------------DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHHhcCCChH--HHHHHH--------------HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 876553 22222 111111 11234788899999999999986665 567899999999999999
Q ss_pred HHHHHHHHHHHhc---CCCCCHHHHHHHHHHHhccCCHHH
Q 048743 516 GDALKIYRRMQEM---KIRPTVETFYYLVYGHSSLEMYRD 552 (653)
Q Consensus 516 ~~a~~~~~~m~~~---g~~p~~~t~~~li~~~~~~~~~~~ 552 (653)
..+.++-+++... ...|...+-..+++-|.-.+....
T Consensus 489 ~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred HHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 9999998887652 123333334455666655554443
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.037 Score=50.49 Aligned_cols=122 Identities=15% Similarity=0.057 Sum_probs=56.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhh
Q 048743 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466 (653)
Q Consensus 387 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~ 466 (653)
...|++.|++++|++..... - +......=+..+.+..+.+-|.+.++.|.+- .-|.+.+-+..+.+.-.
T Consensus 115 a~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--ded~tLtQLA~awv~la--- 183 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQI--DEDATLTQLAQAWVKLA--- 183 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHh---
Confidence 44556666777776666541 1 2222222234455666666666666666542 22211111111111111
Q ss_pred cccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 048743 467 SASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528 (653)
Q Consensus 467 ~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 528 (653)
...+++..|.-+|++|.++ ..|+..+.|.+.-++...|++++|..++++...+
T Consensus 184 --------~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 184 --------TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred --------ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 1123344555555555542 1244455555555555555555555555555443
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.11 Score=47.14 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=54.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 048743 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEA 436 (653)
Q Consensus 357 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 436 (653)
.|++++|.++++.+.+.+ |.|.++|--=+-..-..|+.-.|++-+.+..+. +..|...|.-+-..|...|++++|.-
T Consensus 99 ~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 456666777777666666 666665665555555566666666666666654 45566777777777777777777766
Q ss_pred HHHHHHH
Q 048743 437 LLKQMRK 443 (653)
Q Consensus 437 ~~~~m~~ 443 (653)
-++++.=
T Consensus 176 ClEE~ll 182 (289)
T KOG3060|consen 176 CLEELLL 182 (289)
T ss_pred HHHHHHH
Confidence 6666654
No 143
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.32 E-value=0.21 Score=49.82 Aligned_cols=183 Identities=15% Similarity=0.015 Sum_probs=129.5
Q ss_pred CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHH
Q 048743 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFY 253 (653)
Q Consensus 174 ~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (653)
.|+...+...+.+......-..+..++-+-.+. .-...-|...+..+ ..|+.+.|+..++.+....+. +...+
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~~~-~~~~~d~A~~~l~~L~~~~P~----N~~~~ 343 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQTY-LAGQYDEALKLLQPLIAAQPD----NPYYL 343 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHHHH-HhcccchHHHHHHHHHHhCCC----CHHHH
Confidence 455666667776655544444444443333321 11223355555544 468899999888887665332 23456
Q ss_pred HHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHH
Q 048743 254 ESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELV 333 (653)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (653)
....+.+.+.++.++|.+.++++..
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal~------------------------------------------------------- 368 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKALA------------------------------------------------------- 368 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHh-------------------------------------------------------
Confidence 7778889999999999999998832
Q ss_pred HHhcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 048743 334 LFRNGKLLHS-NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHP 412 (653)
Q Consensus 334 ~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 412 (653)
..|+ ....-.+-.++.+.|+..+|++++....... |.++..|..|-.+|...|+..++..-..+
T Consensus 369 ------l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE------- 433 (484)
T COG4783 369 ------LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAE------- 433 (484)
T ss_pred ------cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHH-------
Confidence 3354 2344567788899999999999999988887 88888899999999999999888776654
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048743 413 MDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 413 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
+|.-.|++++|...+....+.
T Consensus 434 -----------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 434 -----------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------HHHhCCCHHHHHHHHHHHHHh
Confidence 566778899998888887764
No 144
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.27 E-value=0.027 Score=55.98 Aligned_cols=137 Identities=13% Similarity=0.052 Sum_probs=76.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCccCc-hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCC-HHHH
Q 048743 425 YYKVKMFREAEALLKQMRKSCLVQNL-SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST-IYKL 502 (653)
Q Consensus 425 ~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~y 502 (653)
+...|.+++|+..+..+.+. .|+. ++..... +.+.+.++..+|.+.++++.... |+ ...+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~--------------~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~ 377 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAG--------------DILLEANKAKEAIERLKKALALD--PNSPLLQ 377 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHH--------------HHHHHcCChHHHHHHHHHHHhcC--CCccHHH
Confidence 44556677777777766653 4544 2111111 22334666666666666666544 43 3444
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHH
Q 048743 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLN 582 (653)
Q Consensus 503 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~ 582 (653)
-.+-.+|.+.|++.+|+.++++-... .+-|...|..|-++|...|+..++..-.. .+
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A----------------------E~ 434 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA----------------------EG 434 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH----------------------HH
Confidence 55556666666666666666665543 23356666666666666666665544331 23
Q ss_pred HHhCCCHHHHHHHHHHHHhC
Q 048743 583 FLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~ 602 (653)
|...|+++.|...+....+.
T Consensus 435 ~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 435 YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHhCCCHHHHHHHHHHHHHh
Confidence 45566666666666666544
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.26 E-value=0.0099 Score=50.95 Aligned_cols=115 Identities=10% Similarity=-0.033 Sum_probs=84.1
Q ss_pred cCCHHHHHHHHHHHHHccCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCCH
Q 048743 477 MDKSDLAESLIQEMREEAALSTI----YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV--ETFYYLVYGHSSLEMY 550 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~~~~ 550 (653)
.++...+...++.+.+.. |+. ...-.+...+...|++++|...|+........|+. .....|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 578888888888888765 432 22333557778899999999999999987633332 2444567788899999
Q ss_pred HHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 048743 551 RDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYM 599 (653)
Q Consensus 551 ~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m 599 (653)
++|+..++... +-......+...-+.|.+.|++++|...|+..
T Consensus 102 d~Al~~L~~~~------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIP------DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhcc------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 99999986532 22234456667788899999999999998753
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.26 E-value=0.014 Score=50.03 Aligned_cols=94 Identities=15% Similarity=0.065 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccH-HH---HHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHH
Q 048743 178 MIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA-HS---IIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFY 253 (653)
Q Consensus 178 ~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (653)
..|..++..+ ..++...+.+.++.+.+.. |+. .. .-.+...+...|++++|...|+.+.... ++........
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~ 88 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHH
Confidence 3455666665 3777777777777777652 333 22 2234455555666666666666555543 1111111223
Q ss_pred HHHHHhhhccCCHHHHHHHHHH
Q 048743 254 ESLLSLHFKFDDIDAAGELILD 275 (653)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~ 275 (653)
-.|...+...|++++|+..++.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh
Confidence 3344555555555555555544
No 147
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.25 E-value=0.19 Score=47.66 Aligned_cols=204 Identities=10% Similarity=-0.055 Sum_probs=124.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 048743 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS-LLTAYY 426 (653)
Q Consensus 348 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~ 426 (653)
.-+-+.+.-.|++..|+.-|....+-+ |.+-.++---...|...|+-..|+.=|.+..+. +||-..-.. --..+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 466777888899999999999887765 544333334456677778877888778777764 566443221 223578
Q ss_pred HcCChHHHHHHHHHHHHcCCccCc--hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHH
Q 048743 427 KVKMFREAEALLKQMRKSCLVQNL--SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504 (653)
Q Consensus 427 ~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~ 504 (653)
+.|++++|..=|+...+.. |+. ....-....+..-...-...+..+...|+...|+..+..+.+-.. .|...|-.
T Consensus 118 K~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~ 194 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQA 194 (504)
T ss_pred hcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHH
Confidence 9999999999999998753 432 111111111100000000112234457888999999988887542 38888888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 048743 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGD 559 (653)
Q Consensus 505 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 559 (653)
-..+|...|++..|+.=++...+.. .-|..++--+-..+...|+.+.++...++
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 8888889998888876555443321 22334444444555566666555544443
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.18 E-value=0.0061 Score=47.29 Aligned_cols=94 Identities=21% Similarity=0.190 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048743 347 MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426 (653)
Q Consensus 347 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (653)
+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.|+...+.. +.+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 4566777888999999999999998776 5555668888999999999999999999988764 335568888889999
Q ss_pred HcCChHHHHHHHHHHHH
Q 048743 427 KVKMFREAEALLKQMRK 443 (653)
Q Consensus 427 ~~~~~~~a~~~~~~m~~ 443 (653)
..|++++|...+....+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 99999999999988765
No 149
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.18 E-value=0.15 Score=47.89 Aligned_cols=179 Identities=11% Similarity=-0.003 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048743 347 MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC---SDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423 (653)
Q Consensus 347 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (653)
+-.....+.+.|++++|.+.|+++.... |.+.... -.+..++.+.++++.|...+++..+....-....|...+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 3344455566888888888888888766 4443322 3456777888888888888888877543333334444444
Q ss_pred HHHH--cC---------------C---hHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHH
Q 048743 424 AYYK--VK---------------M---FREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLA 483 (653)
Q Consensus 424 ~~~~--~~---------------~---~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a 483 (653)
|.+. .+ + ..+|...|+++.+. -|+. .-..+|
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S---------------------------~ya~~A 163 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS---------------------------QYTTDA 163 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC---------------------------hhHHHH
Confidence 4432 11 1 12344445555442 2432 122223
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048743 484 ESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM--KIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560 (653)
Q Consensus 484 ~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 560 (653)
...+..+.+.= ...--.+.+-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+
T Consensus 164 ~~rl~~l~~~l----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 164 TKRLVFLKDRL----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 22222222110 000113445566777777777777777652 33334445556667777777777776665443
No 150
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.17 E-value=0.0044 Score=54.85 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=76.8
Q ss_pred CCCCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcC----------------CHH
Q 048743 339 KLLHSNRAMAKLINGYKK-----HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG----------------FLE 397 (653)
Q Consensus 339 ~~~p~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g----------------~~~ 397 (653)
+-..+-.+|..+++.|.+ .|..+=....++.|.+-| +..|..+|+.|++.+=+.. +-+
T Consensus 42 ~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg-v~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~ 120 (228)
T PF06239_consen 42 GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG-VEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQE 120 (228)
T ss_pred hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC-CcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHH
Confidence 345677899999999984 477888888889999988 7888899999999887632 346
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048743 398 AAHDILDDMELAGHPMDSTTYKSLLTAYYKVKM 430 (653)
Q Consensus 398 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 430 (653)
-|++++++|...|+.||..|+..|++.+++.+.
T Consensus 121 c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 121 CAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 799999999999999999999999999977764
No 151
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.21 Score=45.79 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=50.5
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH-HH
Q 048743 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE-AE 435 (653)
Q Consensus 357 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~-a~ 435 (653)
.+...+|.-+|++|..+- +|+.-+.+-...++...|++++|..++++..++.. -++.|...+|.+-...|...+ ..
T Consensus 186 gek~qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred chhhhhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHH
Confidence 445667777777776654 55555566666666677777777777777766533 255566555555555554433 34
Q ss_pred HHHHHHHH
Q 048743 436 ALLKQMRK 443 (653)
Q Consensus 436 ~~~~~m~~ 443 (653)
+.+..++.
T Consensus 263 r~l~QLk~ 270 (299)
T KOG3081|consen 263 RNLSQLKL 270 (299)
T ss_pred HHHHHHHh
Confidence 45555544
No 152
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.11 E-value=0.013 Score=51.98 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=73.8
Q ss_pred CcccHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhh
Q 048743 379 ESTLCSDVIDALIQ-----LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE 453 (653)
Q Consensus 379 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 453 (653)
+..+|..+++.|.+ .|.++-....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+.-.
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h--------- 114 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH--------- 114 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc---------
Confidence 33446666666664 48899999999999999999999999999999876 4322 11222222110
Q ss_pred HHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCC
Q 048743 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKM 514 (653)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~ 514 (653)
...+-+-|.+++++|...|+.||..++..+++.+.+.+.
T Consensus 115 ----------------------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 ----------------------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----------------------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 123556688888888888888888888888888877764
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.10 E-value=0.014 Score=47.92 Aligned_cols=97 Identities=13% Similarity=-0.054 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGE---STLCSDVIDALIQLGFLEAAHDILDDMELAGHP--MDSTTYKS 420 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ 420 (653)
++..+...+.+.|++++|.+.|..+.... +.+ ...+..+...+.+.|+++.|...|+.+...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 56677888899999999999999998765 333 234677899999999999999999999764321 22456778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 048743 421 LLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 421 li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
+..++.+.|++++|...++++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 888899999999999999999886
No 154
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.09 E-value=0.4 Score=48.51 Aligned_cols=184 Identities=12% Similarity=0.123 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHH-cCCccCchhhHHHHhhHHHHhhhccccc
Q 048743 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV---KMFREAEALLKQMRK-SCLVQNLSCEMVVSERFSEVADKSASFT 471 (653)
Q Consensus 396 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~-~~~~p~~~~~~~~~~~l~~~~~~~~~~~ 471 (653)
.+++.++++...+.-..-+..+|..+.+---.. ...+..-..++++.. ..+.|+..+-..+. ..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn-----~i------- 376 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMN-----FI------- 376 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHH-----HH-------
Confidence 455666666655433333444554443321111 125555666666654 23455542111111 11
Q ss_pred ccccccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHHhccCC
Q 048743 472 DTSSLMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF-YYLVYGHSSLEM 549 (653)
Q Consensus 472 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~li~~~~~~~~ 549 (653)
-+...+..|..+|.+..+.+..+ ++++++++|.-|| .++.+-|.++|+--... -+|...| ...+.-+...++
T Consensus 377 ---rR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNd 450 (656)
T KOG1914|consen 377 ---RRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLND 450 (656)
T ss_pred ---HHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCc
Confidence 13667899999999999998888 9999999999888 67779999999976653 3344443 467778889999
Q ss_pred HHHHHHHHHHHHHHhhhCCCcc--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 048743 550 YRDITILWGDIKRNIESGVLAV--SRDLYETLLLNFLQGGYFERVMEVIGYMKK 601 (653)
Q Consensus 550 ~~~a~~~~~~~~~~~~~~~~~p--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 601 (653)
-..+..+|+.... + ++.| ....|..+|.-=..-|+...+.++-+++..
T Consensus 451 d~N~R~LFEr~l~---s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 451 DNNARALFERVLT---S-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred chhHHHHHHHHHh---c-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999988762 2 4444 457899999999999999999999888753
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.98 E-value=0.2 Score=48.53 Aligned_cols=218 Identities=13% Similarity=0.109 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGE----STLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSL 421 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 421 (653)
.|...-..|-..|++++|.+.|.+...-.....+ ...|......|.+. +++.|...+ ...
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~---------------~~A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECY---------------EKA 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHH---------------HHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHH---------------HHH
Confidence 5777777888888888888888775432200111 01122222222222 444444444 444
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhccccccccccc-CCHHHHHHHHHHHHH----ccCC
Q 048743 422 LTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM-DKSDLAESLIQEMRE----EAAL 496 (653)
Q Consensus 422 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~m~~----~~~~ 496 (653)
+..|...|++..|-..+..+-+. |-.. |+++.|...|++..+ .+ .
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA~~-----------------------------ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~ 150 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELAEI-----------------------------YEEQLGDYEKAIEYYQKAAELYEQEG-S 150 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-----------------------------HCCTT--HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHhcCcHHHHHHHHHHHHHH-----------------------------HHHHcCCHHHHHHHHHHHHHHHHHCC-C
Confidence 55678888888887777776542 2224 677777777765543 22 2
Q ss_pred C--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----CCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCC
Q 048743 497 S--TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI-----RPTVE-TFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568 (653)
Q Consensus 497 p--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~-t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 568 (653)
+ -..++..+...+.+.|++++|.++|++....-. +++.. .|...+-++...|++-.|.+.++..... ..+
T Consensus 151 ~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~--~~~ 228 (282)
T PF14938_consen 151 PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ--DPS 228 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT--STT
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC
Confidence 2 234567788889999999999999999876432 22232 2333444666789999999999876421 123
Q ss_pred CccC--HHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048743 569 LAVS--RDLYETLLLNFLQ--GGYFERVMEVIGYMKKQNMYVDKLMYKSEF 615 (653)
Q Consensus 569 ~~p~--~~~y~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 615 (653)
+..+ ......||.++-. ...+++|+.-|+.+. +.|.+--..|+
T Consensus 229 F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~----~ld~w~~~~l~ 275 (282)
T PF14938_consen 229 FASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS----RLDNWKTKMLL 275 (282)
T ss_dssp STTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-------HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC----ccHHHHHHHHH
Confidence 3333 3455667776653 344666666666554 45555444444
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.97 E-value=0.049 Score=52.74 Aligned_cols=90 Identities=11% Similarity=0.117 Sum_probs=44.0
Q ss_pred HHhc-CChHHHHHHHHHHHhc----CCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHH
Q 048743 354 YKKH-GKNSELSWLLLSIKKE----HHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHP-----MDST-TYKSLL 422 (653)
Q Consensus 354 ~~~~-~~~~~a~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~~-~~~~li 422 (653)
|-.. |++++|.+.|++.... +....-..++..+...+.+.|++++|.++|++....-.. .+.. .|-..+
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 3344 5666666666554331 100001122555666677777777777777776553221 1221 222333
Q ss_pred HHHHHcCChHHHHHHHHHHHH
Q 048743 423 TAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~m~~ 443 (653)
-++...|++-.|...|++...
T Consensus 204 l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 204 LCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 355556777777777776654
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.97 E-value=0.026 Score=46.22 Aligned_cols=101 Identities=12% Similarity=0.085 Sum_probs=74.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHH
Q 048743 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKI--RPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYET 578 (653)
Q Consensus 501 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~ 578 (653)
++-.+...+.+.|++++|.+.|..+....- ......+..+..++.+.|+++.|..+++.+... ..+.......+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHH
Confidence 456677778889999999999999987421 111345666888899999999999999888632 1111222455777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCC
Q 048743 579 LLLNFLQGGYFERVMEVIGYMKKQN 603 (653)
Q Consensus 579 li~~~~~~g~~~~a~~~~~~m~~~g 603 (653)
+..++...|+.++|.+.++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 7788889999999999999998663
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.79 E-value=0.0043 Score=47.31 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHccCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCCHHHHHH
Q 048743 478 DKSDLAESLIQEMREEAAL-STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV-ETFYYLVYGHSSLEMYRDITI 555 (653)
Q Consensus 478 ~~~~~a~~~~~~m~~~~~~-p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~ 555 (653)
|+++.|..+++++.+.... |+...+-.+..+|.+.|++++|+++++. ... .|+. ...-.+..+|.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555555555555544421 1223333355555556666666655555 211 1111 222233445555555555555
Q ss_pred HHH
Q 048743 556 LWG 558 (653)
Q Consensus 556 ~~~ 558 (653)
+++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.79 E-value=0.0051 Score=46.87 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCH-HHHHHHHHHHHhCCCH
Q 048743 512 GKMIGDALKIYRRMQEMKI-RPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR-DLYETLLLNFLQGGYF 589 (653)
Q Consensus 512 ~g~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~-~~y~~li~~~~~~g~~ 589 (653)
.|+++.|+.+++++.+... .|+...+-.+..++.+.|++++|..+++. . ...|.. ...-.+.++|...|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~------~~~~~~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L------KLDPSNPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H------THHHCHHHHHHHHHHHHHHTT-H
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h------CCCCCCHHHHHHHHHHHHHhCCH
Confidence 5889999999999998643 23455555688999999999999999976 2 233322 3333557789999999
Q ss_pred HHHHHHHHH
Q 048743 590 ERVMEVIGY 598 (653)
Q Consensus 590 ~~a~~~~~~ 598 (653)
++|++++++
T Consensus 75 ~eAi~~l~~ 83 (84)
T PF12895_consen 75 EEAIKALEK 83 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999876
No 160
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.79 E-value=0.51 Score=46.13 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=65.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048743 340 LLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYK 419 (653)
Q Consensus 340 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 419 (653)
-.|+..-|-..|.+++..++|++-.++... . .+++. |..++.+|.+.|+..+|..+... .++.
T Consensus 204 kv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIG-yepFv~~~~~~~~~~eA~~yI~k----------~~~~ 266 (319)
T PF04840_consen 204 KVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIG-YEPFVEACLKYGNKKEASKYIPK----------IPDE 266 (319)
T ss_pred CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCC-hHHHHHHHHHCCCHHHHHHHHHh----------CChH
Confidence 447888899999999999999988776432 2 23344 99999999999999999988877 2225
Q ss_pred HHHHHHHHcCChHHHHHHHHH
Q 048743 420 SLLTAYYKVKMFREAEALLKQ 440 (653)
Q Consensus 420 ~li~~~~~~~~~~~a~~~~~~ 440 (653)
.-+..|.+.|++.+|.+.-.+
T Consensus 267 ~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 267 ERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 567889999999998776433
No 161
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.8 Score=46.43 Aligned_cols=94 Identities=9% Similarity=-0.068 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccch---hHHHHH
Q 048743 180 FNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS-IIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHY---QQFYES 255 (653)
Q Consensus 180 yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~ 255 (653)
+-.+.++.-+..+++.|.+-+....+.. ...| ++..-.++...|.............+.+.....-. ...+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5566777777888888888888777653 3444 45666667777776665554443333221111000 011222
Q ss_pred HHHhhhccCCHHHHHHHHHHh
Q 048743 256 LLSLHFKFDDIDAAGELILDM 276 (653)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~m 276 (653)
+-.+|.+.++.+.|...|.+.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHH
Confidence 334666778888888888775
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.70 E-value=0.022 Score=43.96 Aligned_cols=94 Identities=21% Similarity=0.079 Sum_probs=75.9
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHH
Q 048743 253 YESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQEL 332 (653)
Q Consensus 253 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (653)
+..+...+...|++++|..+|++..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~------------------------------------------------------ 28 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE------------------------------------------------------ 28 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh------------------------------------------------------
Confidence 55667777888999999999998832
Q ss_pred HHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048743 333 VLFRNGKLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409 (653)
Q Consensus 333 ~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 409 (653)
..| +...+..+...+...+++++|.+.++...... +.+..++..+...+...|+.+.|...+....+.
T Consensus 29 -------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 29 -------LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred -------cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 122 23567778888889999999999999988876 555566888999999999999999999887654
No 163
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.66 E-value=0.006 Score=44.18 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=42.7
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048743 355 KKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSL 421 (653)
Q Consensus 355 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 421 (653)
.+.|++++|.++|+++.... |.+...+-.+..+|.+.|++++|..+++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 35677777777777777776 666666777777777777777777777777664 2454444443
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.62 E-value=0.03 Score=53.92 Aligned_cols=132 Identities=11% Similarity=0.131 Sum_probs=99.4
Q ss_pred HHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhH
Q 048743 251 QFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQ 330 (653)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (653)
.+|-.+|...-+.+.++.|..+|.+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~---------------------------------------------------- 29 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK---------------------------------------------------- 29 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc----------------------------------------------------
Confidence 3688888888888889999999999831
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048743 331 ELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG 410 (653)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 410 (653)
......+.....+++..+ ..++.+.|.++|+...+.- +.+...|..-++.+.+.++.+.|..+|++....
T Consensus 30 ------~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~- 99 (280)
T PF05843_consen 30 ------DKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKF--PSDPDFWLEYLDFLIKLNDINNARALFERAISS- 99 (280)
T ss_dssp ------CCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-
T ss_pred ------CCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-
Confidence 112233333334444433 3567777999999988875 777788999999999999999999999999875
Q ss_pred CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048743 411 HPMDS---TTYKSLLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 411 ~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
+.++. ..|...++-=.+.|+.+.+..+.+++.+.
T Consensus 100 l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 100 LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 43333 48999999989999999999999999874
No 165
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.62 E-value=0.025 Score=46.51 Aligned_cols=102 Identities=10% Similarity=0.009 Sum_probs=75.0
Q ss_pred hHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhh
Q 048743 250 QQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGK 329 (653)
Q Consensus 250 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (653)
..++.++|-++++.|+++....+++.. .|+.+.... ....
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~-----~~~~-------------------------------- 41 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKK-----KEGD-------------------------------- 41 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCcc-----ccCc--------------------------------
Confidence 346888999999999999999988766 333322210 0000
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCC
Q 048743 330 QELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF 395 (653)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 395 (653)
-.......|+..+..+++.+|+.+|++..|.++++...+.-.++-+..+|..|+.-.....+
T Consensus 42 ----~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 42 ----YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred ----cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 00345678999999999999999999999999999988877777667778888887666543
No 166
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.61 E-value=0.8 Score=44.80 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHH
Q 048743 179 IFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLS 258 (653)
Q Consensus 179 ~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~ 258 (653)
+.+..|.-+...|+...|.++-.+.+ .||..-|-..+.+++..+++++..++-.. .. +.+. |...+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK-sPIG-----yepFv~ 245 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KK-SPIG-----YEPFVE 245 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC-CCCC-----hHHHHH
Confidence 44455566666666666666655443 46666666777777777777666665432 11 1233 666666
Q ss_pred hhhccCCHHHHHHHHHHh
Q 048743 259 LHFKFDDIDAAGELILDM 276 (653)
Q Consensus 259 ~~~~~g~~~~A~~~~~~m 276 (653)
++.+.|...+|..++.++
T Consensus 246 ~~~~~~~~~eA~~yI~k~ 263 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPKI 263 (319)
T ss_pred HHHHCCCHHHHHHHHHhC
Confidence 666666666666666555
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.60 E-value=0.033 Score=53.67 Aligned_cols=145 Identities=13% Similarity=0.052 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ-LGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (653)
+|..++...-+.+..+.|..+|.+..+.+ ..+..+|-.....-.+ .++.+.|.++|+...+. ++.+...|..-++-
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 56666666666666777777777776544 2222333333333222 45555577777776654 44466666666666
Q ss_pred HHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHH
Q 048743 425 YYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNS 504 (653)
Q Consensus 425 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~ 504 (653)
+.+.|+.+.|..+|++.... +.++.. -...|..
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~----------------------------------------------~~~iw~~ 112 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQ----------------------------------------------SKKIWKK 112 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHH----------------------------------------------CHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhH----------------------------------------------HHHHHHH
Confidence 67777777777777666543 222110 1235666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 048743 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY 542 (653)
Q Consensus 505 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 542 (653)
.|+.=.+.|+++.+.++.+++.+. -|+...+..+++
T Consensus 113 ~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 113 FIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 666666777777777777777663 333333333443
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.55 E-value=0.055 Score=54.23 Aligned_cols=95 Identities=18% Similarity=0.056 Sum_probs=82.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048743 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKM 430 (653)
Q Consensus 351 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 430 (653)
-..+...|++++|+.+|++..+.. |.+...|..+..+|.+.|+++.|+..+++..+.. +.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 455667899999999999999988 7888889999999999999999999999998864 2367788889999999999
Q ss_pred hHHHHHHHHHHHHcCCccCc
Q 048743 431 FREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 431 ~~~a~~~~~~m~~~~~~p~~ 450 (653)
+++|...|+...+ +.|+.
T Consensus 86 ~~eA~~~~~~al~--l~P~~ 103 (356)
T PLN03088 86 YQTAKAALEKGAS--LAPGD 103 (356)
T ss_pred HHHHHHHHHHHHH--hCCCC
Confidence 9999999999987 44654
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.49 E-value=0.18 Score=44.57 Aligned_cols=64 Identities=9% Similarity=-0.103 Sum_probs=40.9
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 380 STLCSDVIDALIQLGFLEAAHDILDDMELAGHPMD--STTYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
...|..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33456666666667777777777777665432222 34566666777777777777777776665
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.43 E-value=0.099 Score=44.29 Aligned_cols=95 Identities=6% Similarity=-0.138 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048743 347 MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426 (653)
Q Consensus 347 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (653)
.-.+-.-+...|++++|.++|+.+..-. |.+..-|-.|--.+-..|++++|...|........ -|+..+-.+-.++.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3455556778999999999999999888 77777788888888899999999999999988764 47888999999999
Q ss_pred HcCChHHHHHHHHHHHHc
Q 048743 427 KVKMFREAEALLKQMRKS 444 (653)
Q Consensus 427 ~~~~~~~a~~~~~~m~~~ 444 (653)
..|+.+.|.+-|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988764
No 171
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.41 E-value=0.052 Score=44.64 Aligned_cols=94 Identities=11% Similarity=0.113 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYE 577 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~ 577 (653)
|..++.++|.++++.|+.+....+++..- |+.++... ..+. .-......|+..+..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~-------------~~~~spl~Pt~~lL~ 56 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD-------------YPPSSPLYPTSRLLI 56 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc-------------cCCCCCCCCCHHHHH
Confidence 34567788888888888888877776543 22221100 0000 012335566666666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhC-CCCCCHHhHHHHH
Q 048743 578 TLLLNFLQGGYFERVMEVIGYMKKQ-NMYVDKLMYKSEF 615 (653)
Q Consensus 578 ~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~l~ 615 (653)
+++.+|+..|++..|+++++...+. +++.+..+|..|+
T Consensus 57 AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 57 AIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6666666666666666666655433 5555566666665
No 172
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.38 E-value=1.6 Score=45.69 Aligned_cols=50 Identities=8% Similarity=0.115 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 405 (653)
..-.+-+++.+.|..++|.+.|-+.. .| ...+..|...+++.+|.++-+.
T Consensus 854 llp~~a~mf~svGMC~qAV~a~Lr~s-----~p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 854 LLPVMADMFTSVGMCDQAVEAYLRRS-----LP-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred hHHHHHHHHHhhchHHHHHHHHHhcc-----Cc-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 34456667777777777776654421 11 2345566666777776666554
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.33 E-value=0.48 Score=49.84 Aligned_cols=164 Identities=8% Similarity=-0.036 Sum_probs=88.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccc--cCCHH
Q 048743 409 AGHPMDSTTYKSLLTAYYKVK-----MFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSL--MDKSD 481 (653)
Q Consensus 409 ~g~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~ 481 (653)
.+.+.|...|...+.|..... ..+.|..+|++..+ +.|+............. .. ..+.. ..++.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~-~~------~~~~~~~~~~l~ 401 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADI-VR------HSQQPLDEKQLA 401 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH-HH------HhcCCccHHHHH
Confidence 344556677777777654332 25567777777766 35664211111111000 00 00000 11233
Q ss_pred HHHHHHHHHHHcc-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048743 482 LAESLIQEMREEA-ALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560 (653)
Q Consensus 482 ~a~~~~~~m~~~~-~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 560 (653)
.+.+......... ...+...|.++.-.+...|++++|...+++..+.+ |+...|..+...+...|+.++|.+.++..
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344443333321 11245667666555566788888888888877754 67777888888888888888888888766
Q ss_pred HHHhhhCCCccCHHHHHHHHHHHHhCCCHH
Q 048743 561 KRNIESGVLAVSRDLYETLLLNFLQGGYFE 590 (653)
Q Consensus 561 ~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 590 (653)
. .+.|...+|. ++..+.-.-+.+
T Consensus 480 ~------~L~P~~pt~~-~~~~~~f~~~~~ 502 (517)
T PRK10153 480 F------NLRPGENTLY-WIENLVFQTSVE 502 (517)
T ss_pred H------hcCCCCchHH-HHHhccccccHH
Confidence 5 3555555543 333333333333
No 174
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.32 E-value=2.1 Score=46.37 Aligned_cols=76 Identities=12% Similarity=-0.014 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 048743 536 TFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV-SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSE 614 (653)
Q Consensus 536 t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 614 (653)
+-+.|++.|-+.++.....+.+-.+...+ ...| |..+--.+|+.|+-.|-+..|.++|+.|--+.|.-|...|.++
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~gl---t~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGL---TKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHh---hcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHH
Confidence 34577888889888774433333232111 1222 3333345788999999999999999999888888887666543
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.30 E-value=0.14 Score=45.25 Aligned_cols=85 Identities=9% Similarity=0.033 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc-CHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT--VETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV-SRD 574 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p-~~~ 574 (653)
....|..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...++...+ ..| +..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~ 107 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE------LNPKQPS 107 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCcccHH
Confidence 556678888888999999999999999987543332 35788888899999999999999988763 233 455
Q ss_pred HHHHHHHHHHhCCC
Q 048743 575 LYETLLLNFLQGGY 588 (653)
Q Consensus 575 ~y~~li~~~~~~g~ 588 (653)
.+..+...+...|+
T Consensus 108 ~~~~lg~~~~~~g~ 121 (172)
T PRK02603 108 ALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHcCC
Confidence 56666667777766
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.28 E-value=0.13 Score=41.91 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=53.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHH
Q 048743 507 YFFCKGKMIGDALKIYRRMQEMKIRPT--VETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584 (653)
Q Consensus 507 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~ 584 (653)
.++-..|+.++|+.+|++-.+.|.... ...+..+-.++...|++++|..+++.......+... +......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~--~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL--NAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc--cHHHHHHHHHHHH
Confidence 345567777777777777777665544 234555666677777777777777766522111111 1122222333566
Q ss_pred hCCCHHHHHHHHHHHH
Q 048743 585 QGGYFERVMEVIGYMK 600 (653)
Q Consensus 585 ~~g~~~~a~~~~~~m~ 600 (653)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7777777777765544
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.28 E-value=0.1 Score=53.45 Aligned_cols=243 Identities=13% Similarity=0.076 Sum_probs=127.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHH---------HHHHHhcCCCCCCcccHHHHHHHHHHcCCHH--HHHHHHHHHHH
Q 048743 340 LLHSNRAMAKLINGYKKHGKNSELSWL---------LLSIKKEHHSFGESTLCSDVIDALIQLGFLE--AAHDILDDMEL 408 (653)
Q Consensus 340 ~~p~~~~~~~li~~~~~~~~~~~a~~~---------~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~ 408 (653)
+.|..+.+.+-+..|...|.+++|.++ ++.+..+. . +.-.+++.-++|.+..+.. +...-+++|.+
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--L-eAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~ 628 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--L-EALDFETARKAYIRVRDLRYLELISELEERKK 628 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHHHHH--H-hhhhhHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 445555566666677777877777654 22222221 1 1112566667777766544 33444566777
Q ss_pred CCCCCCHHHHHHH----------HHHHHHcCChHHHHHHHHHHHHcCC-----c-cCc-hhhHHHHhhHHHHhhhccc--
Q 048743 409 AGHPMDSTTYKSL----------LTAYYKVKMFREAEALLKQMRKSCL-----V-QNL-SCEMVVSERFSEVADKSAS-- 469 (653)
Q Consensus 409 ~g~~p~~~~~~~l----------i~~~~~~~~~~~a~~~~~~m~~~~~-----~-p~~-~~~~~~~~~l~~~~~~~~~-- 469 (653)
.|-.|+....... ...+.++|.-..|+++|.+|+--.. . .+. ....+ +....++...
T Consensus 629 rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL----~RKRA~WAr~~k 704 (1081)
T KOG1538|consen 629 RGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKML----IRKRADWARNIK 704 (1081)
T ss_pred cCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHH----HHHHHHHhhhcC
Confidence 7777776533221 1222333434444444433321000 0 000 00000 1111111111
Q ss_pred ----ccccccccCCHHHHHHHHH-----H-HHHccCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHH
Q 048743 470 ----FTDTSSLMDKSDLAESLIQ-----E-MREEAALS---TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVET 536 (653)
Q Consensus 470 ----~~~~~~~~~~~~~a~~~~~-----~-m~~~~~~p---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 536 (653)
-.++....|+.++|..+.- + +.+-+.+. +-.+...+..-+-+...+..|-++|..|-.
T Consensus 705 ePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------- 775 (1081)
T KOG1538|consen 705 EPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------- 775 (1081)
T ss_pred CcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------
Confidence 1344556777777666541 1 11222112 222333333334455567778888887753
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHH-----------HHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 048743 537 FYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL-----------YETLLLNFLQGGYFERVMEVIGYMKKQNM 604 (653)
Q Consensus 537 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~-----------y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 604 (653)
...+++.....++|++|..+-+... .+.||+.. |.-.-++|.++|+-.+|.++++++....+
T Consensus 776 ~ksiVqlHve~~~W~eAFalAe~hP------e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 776 LKSLVQLHVETQRWDEAFALAEKHP------EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHHHhhheeecccchHhHhhhhhCc------cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 2357788889999999988876543 44444432 44456789999999999999999976544
No 178
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.25 E-value=1.9 Score=45.17 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhccCCHH
Q 048743 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQE-MKIRPTVETFYYLVYGHSSLEMYR 551 (653)
Q Consensus 499 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~~~~~ 551 (653)
.++|-+|.+--...|.++.|++.--.+.. ..+-|-...|..|.-+-|..+.+.
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFG 1074 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFG 1074 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhh
Confidence 34555555556667778877776555544 345666667776655555444433
No 179
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.19 E-value=0.099 Score=52.38 Aligned_cols=99 Identities=6% Similarity=-0.027 Sum_probs=59.3
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHHHhC
Q 048743 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV-SRDLYETLLLNFLQG 586 (653)
Q Consensus 508 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~ 586 (653)
.+...|++++|+++|.+.++..- -+...|..+..+|...|++++|+..++.+.+ +.| +...|..+..+|...
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~------l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIE------LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCcCCHHHHHHHHHHHHHh
Confidence 34456677777777777665421 2345566666666777777777777766652 223 445566666666777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048743 587 GYFERVMEVIGYMKKQNMYVDKLMYKSEF 615 (653)
Q Consensus 587 g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 615 (653)
|++++|...|++..+ +.|+.......+
T Consensus 84 g~~~eA~~~~~~al~--l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGAS--LAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 777777777776663 345544444444
No 180
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.09 E-value=1.1 Score=40.89 Aligned_cols=168 Identities=14% Similarity=0.041 Sum_probs=91.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048743 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGEST---LCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY 425 (653)
Q Consensus 349 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (653)
..-..+...|++++|.+.|+.+.... |.+.. ..-.+..++.+.|+++.|...+++..+.-..-....+...+.|.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 44555677899999999999998876 33322 35567888889999999999999987653222222333333333
Q ss_pred HHc-------------CChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHH
Q 048743 426 YKV-------------KMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE 492 (653)
Q Consensus 426 ~~~-------------~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 492 (653)
+.. +...+|...|+.+.+. -|+ ..-..+|...+..+.+
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~--yP~---------------------------S~y~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKR--YPN---------------------------SEYAEEAKKRLAELRN 138 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TT---------------------------STTHHHHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHH--CcC---------------------------chHHHHHHHHHHHHHH
Confidence 221 1133455556555543 243 2333344333333332
Q ss_pred ccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHhccCCHHHH
Q 048743 493 EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV----ETFYYLVYGHSSLEMYRDI 553 (653)
Q Consensus 493 ~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a 553 (653)
.= ...--.+...|.+.|.+..|..-++.+++. -|+. .....++.++.+.|..+.+
T Consensus 139 ~l----a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 139 RL----AEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HH----HHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HH----HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 10 001112456677777777777777777764 2332 3445666666666665533
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.08 E-value=0.13 Score=45.31 Aligned_cols=64 Identities=8% Similarity=-0.245 Sum_probs=49.0
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 380 STLCSDVIDALIQLGFLEAAHDILDDMELAGHPM--DSTTYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
...|..+...+...|++++|...|++.......| ...+|..+-..+.+.|++++|...++....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3446777777888899999999998887653222 234778888888899999999999888876
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.00 E-value=0.091 Score=49.02 Aligned_cols=96 Identities=22% Similarity=0.231 Sum_probs=58.3
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHHHhCC
Q 048743 510 CKGKMIGDALKIYRRMQEMKIRP-TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV-SRDLYETLLLNFLQGG 587 (653)
Q Consensus 510 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g 587 (653)
.+.+++.+|+..|.+.++. .| |.+-|..=-.+|++.|.++.|++=.+... .+.| ...+|..|-.+|...|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al------~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL------SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH------hcChHHHHHHHHHHHHHHccC
Confidence 4466677777777766653 33 34445555566777777777666554443 2333 2345666667777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048743 588 YFERVMEVIGYMKKQNMYVDKLMYKSEF 615 (653)
Q Consensus 588 ~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 615 (653)
++++|++.|+... .+.|+..+|..-+
T Consensus 164 k~~~A~~aykKaL--eldP~Ne~~K~nL 189 (304)
T KOG0553|consen 164 KYEEAIEAYKKAL--ELDPDNESYKSNL 189 (304)
T ss_pred cHHHHHHHHHhhh--ccCCCcHHHHHHH
Confidence 7777777766655 4566666666555
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.98 E-value=0.42 Score=50.26 Aligned_cols=57 Identities=16% Similarity=0.022 Sum_probs=44.9
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHH
Q 048743 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF 537 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 537 (653)
.|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++.... .|...||
T Consensus 433 ~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 433 KGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred cCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 467777777777777665 67788999999999999999999999987764 5555554
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.98 E-value=0.029 Score=40.10 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=26.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 389 ALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 389 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
.+.+.|++++|...|++..+.. +-+...+..+-.++...|++++|...|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555555555443 11344444455555555555555555555543
No 185
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.96 E-value=0.042 Score=47.14 Aligned_cols=71 Identities=17% Similarity=0.091 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCCHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME-----LAGHPMDSTTY 418 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~~ 418 (653)
+...++..+...|++++|..+.+.+.... |.+...|..+|.+|...|+...|.++|+.+. +-|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34566667777888888888888888877 7777778888888888888888888887763 34777776653
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.93 E-value=0.029 Score=40.53 Aligned_cols=48 Identities=10% Similarity=0.065 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048743 512 GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560 (653)
Q Consensus 512 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 560 (653)
.|++++|+++|+++...... |...+..+..+|.+.|++++|..+++.+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444444443111 3333334444444444444444444443
No 187
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.87 E-value=0.06 Score=46.17 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhh-hCCCccCHHHHH
Q 048743 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE-SGVLAVSRDLYE 577 (653)
Q Consensus 501 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~p~~~~y~ 577 (653)
+...++..+...|++++|+.+.+.+.... +.|...|..+|.+|...|+...|.++++.+.+.+. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45677888888999999999999998863 45788899999999999999999999999877665 569999887643
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.83 E-value=0.4 Score=49.42 Aligned_cols=82 Identities=16% Similarity=0.108 Sum_probs=52.5
Q ss_pred hhhHHHHHHHHHhcCChh--hHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHH
Q 048743 177 TMIFNLVLHACVRFGSSL--KGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYE 254 (653)
Q Consensus 177 ~~~yn~li~~~~~~g~~~--~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (653)
...+++-=++|.+-.+.. +...=+++|++.|-.|+... +...|+-.|++.+|-++|..--. -|
T Consensus 598 AL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~------------en 662 (1081)
T KOG1538|consen 598 ALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGH------------EN 662 (1081)
T ss_pred hhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCc------------hh
Confidence 345666667787766643 34445678888998899876 45556667888888888765322 23
Q ss_pred HHHHhhhccCCHHHHHHHH
Q 048743 255 SLLSLHFKFDDIDAAGELI 273 (653)
Q Consensus 255 ~li~~~~~~g~~~~A~~~~ 273 (653)
..+.+|.....+|.|.+++
T Consensus 663 RAlEmyTDlRMFD~aQE~~ 681 (1081)
T KOG1538|consen 663 RALEMYTDLRMFDYAQEFL 681 (1081)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555554
No 189
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.78 E-value=2.4 Score=42.29 Aligned_cols=150 Identities=9% Similarity=0.032 Sum_probs=87.4
Q ss_pred HHhccchhHHHHHHHHhhhhcCC-CC----chhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHH-
Q 048743 29 ASKNHQVGEAWETFNDFQRLHGI-PE----RHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLS- 102 (653)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~- 102 (653)
+-++++..+|..+|...-+.... |. ...-+.+|+++.... ++.....+....+..|. ..|-.+..+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n----ld~Me~~l~~l~~~~~~----s~~l~LF~~L 87 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN----LDLMEKQLMELRQQFGK----SAYLPLFKAL 87 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh----HHHHHHHHHHHHHhcCC----chHHHHHHHH
Confidence 34789999999999987663221 11 223478888885432 23333333333333332 334444433
Q ss_pred -HHhcCCCchHHHHHHHHHcC--ccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCchhh
Q 048743 103 -LARAQMPVPASMILRLMLGR--ENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMI 179 (653)
Q Consensus 103 -~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 179 (653)
+-+.+.+++|++.+..-.+. +-.|.-- +. ++. ..-+|..-
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~L--d~---------------------------ni~--------~l~~df~l 130 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWL--DT---------------------------NIQ--------QLFSDFFL 130 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchh--hh---------------------------hHH--------HHhhHHHH
Confidence 34678888998888766554 2111110 00 000 01233444
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcC----CCccHHHHHHHHHHHH
Q 048743 180 FNLVLHACVRFGSSLKGQHIMELMSQTG----VVADAHSIIILAQIHE 223 (653)
Q Consensus 180 yn~li~~~~~~g~~~~a~~l~~~m~~~g----~~p~~~t~~~ll~~~~ 223 (653)
=+..+..+...|++.++..+++.|...= ...+..+|+.++-.++
T Consensus 131 ~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 131 DEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 4567788889999999999999988653 3378888887555554
No 190
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.76 E-value=0.43 Score=42.00 Aligned_cols=97 Identities=10% Similarity=0.000 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP--TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL 575 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~ 575 (653)
-...|..+...+...|++++|+..|++.......| ...++..+-..+...|++++|...++...+. .+.....
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-----~~~~~~~ 108 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-----NPFLPQA 108 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCcHHH
Confidence 35567788888888999999999999988653332 2357888889999999999999999887632 1222344
Q ss_pred HHHHHHHHH-------hCCCHHHHHHHHHHH
Q 048743 576 YETLLLNFL-------QGGYFERVMEVIGYM 599 (653)
Q Consensus 576 y~~li~~~~-------~~g~~~~a~~~~~~m 599 (653)
+..+...+. ..|++++|...+++-
T Consensus 109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 555555555 778877666555543
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.76 E-value=1.8 Score=40.69 Aligned_cols=177 Identities=14% Similarity=0.097 Sum_probs=108.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCccHHHH----HHHHHHHHhcCChhhhHHHHHHhhhcCC--CcccchhHHHHHH
Q 048743 183 VLHACVRFGSSLKGQHIMELMSQTGVVADAHSI----IILAQIHEMNCQRDELKKFKCYIDQLST--PFAHHYQQFYESL 256 (653)
Q Consensus 183 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~l 256 (653)
....+.+.|++++|.+.|+..... .|+.... -.+..++-+.++.+.|...++...+..+ |.+. |...
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-----~a~Y 110 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-----YVLY 110 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-----HHHH
Confidence 344456789999999999999885 4444322 3456777889999999999988877633 3222 2223
Q ss_pred HHhhhc--c---------------CCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhH
Q 048743 257 LSLHFK--F---------------DDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLE 319 (653)
Q Consensus 257 i~~~~~--~---------------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (653)
+.+.+. . .|...+.+.+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~---------------------------------------------- 144 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF---------------------------------------------- 144 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHH----------------------------------------------
Confidence 332221 0 0111111111
Q ss_pred HHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHH
Q 048743 320 KDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399 (653)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a 399 (653)
..+..+|.-|-.+.-..+|...+..+...- .. . --.+...|.+.|.+..|
T Consensus 145 -------------------------~~~~~li~~yP~S~ya~~A~~rl~~l~~~l---a~-~-e~~ia~~Y~~~~~y~AA 194 (243)
T PRK10866 145 -------------------------RDFSKLVRGYPNSQYTTDATKRLVFLKDRL---AK-Y-ELSVAEYYTKRGAYVAV 194 (243)
T ss_pred -------------------------HHHHHHHHHCcCChhHHHHHHHHHHHHHHH---HH-H-HHHHHHHHHHcCchHHH
Confidence 123455555555555556655544443321 00 1 22566778888888888
Q ss_pred HHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048743 400 HDILDDMELA--GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442 (653)
Q Consensus 400 ~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 442 (653)
..-|+.+.+. +.+........++.+|.+.|..++|......+.
T Consensus 195 ~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 195 VNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 8888888764 333445667778889999999998888776654
No 192
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.69 E-value=2.2 Score=41.18 Aligned_cols=102 Identities=14% Similarity=0.024 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048743 345 RAMAKLINGYKKHGKN---SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSL 421 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 421 (653)
.++..++.+|...+.. ++|..+++.+.... +..+.++-.-+..+.+.++.+.+.+++.+|...- .-....+..+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 3567788888877764 45677777776665 4445556677888888999999999999998862 2234455555
Q ss_pred HHHH---HHcCChHHHHHHHHHHHHcCCccCc
Q 048743 422 LTAY---YKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 422 i~~~---~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
+..+ .... ...|...+..+....+.|..
T Consensus 162 l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEKS-PELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhhC-cHHHHHHHHHHHHHHhCCCh
Confidence 5544 4433 45566666666655555543
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.66 E-value=0.054 Score=39.23 Aligned_cols=61 Identities=16% Similarity=0.046 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG-FLEAAHDILDDME 407 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 407 (653)
.+|..+-..+...|++++|+..|.+..+.. |.+...|..+-.+|.+.| ++++|.+.++...
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344555555555555555555555555554 445555555555555555 4555555555543
No 194
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.65 E-value=0.064 Score=40.02 Aligned_cols=64 Identities=13% Similarity=0.020 Sum_probs=29.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCC-ccC-HHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 048743 536 TFYYLVYGHSSLEMYRDITILWGDIKRNIESGVL-AVS-RDLYETLLLNFLQGGYFERVMEVIGYM 599 (653)
Q Consensus 536 t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m 599 (653)
+|+.+-..|...|++++|+.++++..+..+..|- .|+ ..+++.+...+...|++++|++.+++-
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444555555555555555544433222221 121 334555555555556655555555543
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.59 E-value=0.071 Score=38.04 Aligned_cols=58 Identities=14% Similarity=-0.004 Sum_probs=51.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048743 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409 (653)
Q Consensus 350 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 409 (653)
+-..+.+.|++++|.+.|+++.+.. |.+...+..+...+.+.|++++|...|++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998 888888999999999999999999999999764
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.58 E-value=0.79 Score=37.34 Aligned_cols=56 Identities=23% Similarity=0.130 Sum_probs=32.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 388 DALIQLGFLEAAHDILDDMELAGHPMD--STTYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 388 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
.++-..|+.++|..+|++....|.... ...+-.+-+.+...|++++|+.+|++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455666666666666666665443 22344455566666666666666666654
No 197
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.56 E-value=2.5 Score=40.93 Aligned_cols=138 Identities=12% Similarity=0.206 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cC----ChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhccc
Q 048743 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYK--VK----MFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSAS 469 (653)
Q Consensus 396 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~----~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~ 469 (653)
++....+++.|.+.|++-+..+|-+....... .. ....|..+|+.|++...-.+..-.+.....+.....
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~---- 153 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSE---- 153 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccc----
Confidence 44567888999999999888877664433333 22 256789999999986432222111222222211100
Q ss_pred ccccccccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 048743 470 FTDTSSLMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKM---IGDALKIYRRMQEMKIRPTVETFYYLVY 542 (653)
Q Consensus 470 ~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~t~~~li~ 542 (653)
....-.+.++.+++.+.+.|... |..-+-+-|-++..... ..++.++++.+.+.|+++....|..+.-
T Consensus 154 -----~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 154 -----DVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred -----cHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 00112356788888898888877 44344444444443222 4578889999999999988877665433
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.50 E-value=1.5 Score=38.07 Aligned_cols=137 Identities=8% Similarity=-0.004 Sum_probs=102.9
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHH
Q 048743 495 ALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD 574 (653)
Q Consensus 495 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~ 574 (653)
..|++..--.|-.++.+.|++.+|...|++-..--+.-|......+.++....+++..|...++.+.+. ...+-.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~-~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY-NPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc-CCccCCCCc-
Confidence 347787778899999999999999999998876445567788888999999999999999999988643 233344444
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHhhhhhHHhhhhhHHHHH
Q 048743 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTE 634 (653)
Q Consensus 575 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~ 634 (653)
.-.+.+.|...|+...|+.-|+....----|-...|-..+....|+...+..-...+++
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 33456788999999999999999886554556667777666666766655554455554
No 199
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.31 E-value=0.23 Score=42.13 Aligned_cols=84 Identities=13% Similarity=-0.027 Sum_probs=61.7
Q ss_pred ccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 048743 476 LMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDIT 554 (653)
Q Consensus 476 ~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~ 554 (653)
..|++++|..+|+-+...+ | +..-|-.|--++-..|++++|++.|........ -|...+-.+-.++...|+.+.|.
T Consensus 47 ~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHH
Confidence 3788888888888877655 4 555566677777778888888888888777542 35666777777888888888888
Q ss_pred HHHHHHHH
Q 048743 555 ILWGDIKR 562 (653)
Q Consensus 555 ~~~~~~~~ 562 (653)
+.|+....
T Consensus 124 ~aF~~Ai~ 131 (157)
T PRK15363 124 KALKAVVR 131 (157)
T ss_pred HHHHHHHH
Confidence 88876653
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.35 Score=45.47 Aligned_cols=119 Identities=14% Similarity=0.073 Sum_probs=97.6
Q ss_pred cccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhH
Q 048743 14 WEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQL 93 (653)
Q Consensus 14 ~~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 93 (653)
-++-+.+-+.-+-..|...|+.+.|..-|....+.. -+++..+..+-.++..+.+...-.++.++|.+..+.++. |.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~--~i 227 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA--NI 227 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc--cH
Confidence 445577788888999999999999999999988842 245667788888888888777789999999999887665 78
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHH
Q 048743 94 DLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVH 137 (653)
Q Consensus 94 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 137 (653)
.+...|...+...|++.+|...++.|.+. .|....+..+|..
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~ 269 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence 88888889999999999999999999987 4555556666553
No 201
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.26 E-value=5.6 Score=43.28 Aligned_cols=85 Identities=8% Similarity=0.008 Sum_probs=55.6
Q ss_pred ccccCCHH---HHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC
Q 048743 474 SSLMDKSD---LAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEM 549 (653)
Q Consensus 474 ~~~~~~~~---~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 549 (653)
+-+.++.. +|.-+++.-.... | |..+=-.+|+.|+-.|-+..|.++|+.|--..++-|..-|. +.+-+...|+
T Consensus 446 ~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~ 522 (932)
T KOG2053|consen 446 WRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGR 522 (932)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhccc
Confidence 33455544 3444445444332 3 55555678889999999999999999998777877766553 3455566677
Q ss_pred HHHHHHHHHHHH
Q 048743 550 YRDITILWGDIK 561 (653)
Q Consensus 550 ~~~a~~~~~~~~ 561 (653)
+..+...++...
T Consensus 523 ~~~~s~~~~~~l 534 (932)
T KOG2053|consen 523 SSFASNTFNEHL 534 (932)
T ss_pred chhHHHHHHHHH
Confidence 777766666544
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.26 E-value=0.41 Score=45.37 Aligned_cols=102 Identities=9% Similarity=-0.053 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES---TLCSDVIDALIQLGFLEAAHDILDDMELAG--HPMDSTTYK 419 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~ 419 (653)
..|...+..+.+.|++++|...|+.+.+.. |.+. ..+--+...|...|+++.|...|+.+.+.- -+.....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 456777766677899999999999999877 5443 357788899999999999999999998642 112344555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 420 SLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 420 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
.+...+...|+.++|..+|+.+.+. -|+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 5667788999999999999999875 3553
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.16 E-value=0.3 Score=46.33 Aligned_cols=105 Identities=13% Similarity=0.110 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHH
Q 048743 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV----ETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD 574 (653)
Q Consensus 499 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~ 574 (653)
...|+..+..+.+.|++++|...|+.+... .|+. ..+-.+...|...|++++|...|..+.+....... ...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~--~~d 218 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK--AAD 218 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc--hhH
Confidence 345666666667789999999999999985 3443 46677888999999999999999988743222222 233
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH
Q 048743 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKL 609 (653)
Q Consensus 575 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 609 (653)
.+-.+...+...|+.++|..+|++..+. .|+..
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 3444566777899999999999998755 35543
No 204
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.91 E-value=1.3 Score=45.47 Aligned_cols=158 Identities=13% Similarity=0.069 Sum_probs=99.5
Q ss_pred HHHHhcCChhhHHHHHHHHH-hcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhcc
Q 048743 185 HACVRFGSSLKGQHIMELMS-QTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKF 263 (653)
Q Consensus 185 ~~~~~~g~~~~a~~l~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 263 (653)
+...-+|+++.+.++...=. -..+ | ..-...++..+.+.|-.+.|.++-..- ..-.+...++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~---------------~~rFeLAl~l 331 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDP---------------DHRFELALQL 331 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------------HHHHHHHHHC
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCCh---------------HHHhHHHHhc
Confidence 34445788888777664111 1111 2 233667777777888888887774321 2233444567
Q ss_pred CCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCC
Q 048743 264 DDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHS 343 (653)
Q Consensus 264 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 343 (653)
|+++.|.++.++. .+
T Consensus 332 g~L~~A~~~a~~~-----------------------------------------------------------------~~ 346 (443)
T PF04053_consen 332 GNLDIALEIAKEL-----------------------------------------------------------------DD 346 (443)
T ss_dssp T-HHHHHHHCCCC-----------------------------------------------------------------ST
T ss_pred CCHHHHHHHHHhc-----------------------------------------------------------------Cc
Confidence 8888888776555 46
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (653)
...|..|-+.+.+.|+++-|++.|.+... |..|+-.|.-.|+.+...++.+.....|- +|....
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~ 410 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQ 410 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHH
Confidence 66889999999999999999999887543 88888888888998888888777766653 456666
Q ss_pred HHHHcCChHHHHHHHHH
Q 048743 424 AYYKVKMFREAEALLKQ 440 (653)
Q Consensus 424 ~~~~~~~~~~a~~~~~~ 440 (653)
++.-.|+.++..+++.+
T Consensus 411 ~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 411 AALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHT-HHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 67777888887766543
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.84 E-value=0.14 Score=37.50 Aligned_cols=55 Identities=20% Similarity=0.079 Sum_probs=31.8
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048743 353 GYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409 (653)
Q Consensus 353 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 409 (653)
.|.+.+++++|.+.++.+...+ |.+...|...-..+.+.|++++|...|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555566666666666665555 555555555555566666666666666655543
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.71 E-value=4.9 Score=39.94 Aligned_cols=170 Identities=11% Similarity=0.070 Sum_probs=103.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCCcccHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048743 347 MAKLINGYKKHGKNSELSWLLLSIKKEHH--SFGESTLCSDVIDALIQ---LGFLEAAHDILDDMELAGHPMDSTTYKSL 421 (653)
Q Consensus 347 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 421 (653)
.-.++-+|....+++...++++.+..-.. .+....+--...-++-+ .|+.++|++++..+....-.+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 33666679999999999999999987631 11122222334555666 79999999999997776777888888887
Q ss_pred HHHHH----Hc-----CChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHH---HHH
Q 048743 422 LTAYY----KV-----KMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL---IQE 489 (653)
Q Consensus 422 i~~~~----~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~---~~~ 489 (653)
-..|- .. ...++|...|.+-.+. .|+.+..+=. +.+..... . ....-.+..++ +..
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~-AtLL~~~g------~---~~~~~~el~~i~~~l~~ 291 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINA-ATLLMLAG------H---DFETSEELRKIGVKLSS 291 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHH-HHHHHHcC------C---cccchHHHHHHHHHHHH
Confidence 76652 21 2367788777776653 4655322222 22222111 0 00111122222 222
Q ss_pred -HHHccC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 048743 490 -MREEAA---LSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528 (653)
Q Consensus 490 -m~~~~~---~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 528 (653)
+.++|. ..+-..+.+++.++.-.|+.++|.+..++|...
T Consensus 292 llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 292 LLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 223332 236666778888888888888888888888865
No 207
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.57 E-value=0.29 Score=45.81 Aligned_cols=93 Identities=18% Similarity=0.055 Sum_probs=79.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 048743 352 NGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM-DSTTYKSLLTAYYKVKM 430 (653)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 430 (653)
+-+.+.+++++|+..|.+...-. |.|.+.|..=..+|++.|.++.|.+=.+..+.- .| -..+|..|-.+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 34667899999999999999887 888888999999999999999999888776653 23 34589999999999999
Q ss_pred hHHHHHHHHHHHHcCCccCc
Q 048743 431 FREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 431 ~~~a~~~~~~m~~~~~~p~~ 450 (653)
+++|.+.|++..+ +.|+.
T Consensus 165 ~~~A~~aykKaLe--ldP~N 182 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDN 182 (304)
T ss_pred HHHHHHHHHhhhc--cCCCc
Confidence 9999999988876 66775
No 208
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.57 E-value=0.13 Score=37.10 Aligned_cols=63 Identities=11% Similarity=0.128 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE-MYRDITILWGDIK 561 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~~~~~~~ 561 (653)
+..+|..+-..+...|++++|+..|++.++.. +-+...|..+-.++...| ++++|.+.++...
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34567777777777788888888887777752 123456666777777777 5777777776654
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.55 E-value=5.5 Score=39.60 Aligned_cols=172 Identities=11% Similarity=0.017 Sum_probs=86.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc---hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHcc
Q 048743 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL---SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEA 494 (653)
Q Consensus 418 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~ 494 (653)
...++-+|....+++...++++.|... |+. ....+....-.++-+ =.+.|+.++|.+++..+....
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~---p~~~~~~~~~i~~~yafALnR--------rn~~gdre~Al~il~~~l~~~ 212 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEAL---PTCDVANQHNIKFQYAFALNR--------RNKPGDREKALQILLPVLESD 212 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhcc---CccchhcchHHHHHHHHHHhh--------cccCCCHHHHHHHHHHHHhcc
Confidence 334555688888899999998888763 322 111111111111111 013777888888887766555
Q ss_pred CCCCHHHHHHHHHHHHc----C-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH----
Q 048743 495 ALSTIYKLNSSIYFFCK----G-----KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK---- 561 (653)
Q Consensus 495 ~~p~~~~y~~li~~~~~----~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~---- 561 (653)
-.++..+|..+-+.|-. . ...++|++.|.+ ...+.||..+=-.+...+...|...+...-.+.+.
T Consensus 213 ~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~k--gFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~ 290 (374)
T PF13281_consen 213 ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRK--GFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLS 290 (374)
T ss_pred CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHH--HHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 55677777776666542 1 124455555542 23344443332233333444443222221111111
Q ss_pred HHhhhCCCcc---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 048743 562 RNIESGVLAV---SRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 562 ~~~~~~~~~p---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 602 (653)
......|... +-=.+.+++.+..-.|+.++|.+..+.|.+.
T Consensus 291 ~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 291 SLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1111222221 2222345667777777777777777777644
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.51 E-value=0.14 Score=38.09 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCC---CC-HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 048743 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEM--KIR---PT-VETFYYLVYGHSSLEMYRDITILWGDIKR 562 (653)
Q Consensus 499 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~---p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~~ 562 (653)
..+|+.+-..|...|++++|++.|++..+. ... |+ ..++..+-..+...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457899999999999999999999998853 122 33 45788888999999999999999987754
No 211
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.46 E-value=0.35 Score=44.66 Aligned_cols=120 Identities=13% Similarity=0.080 Sum_probs=80.0
Q ss_pred CCchhHHHHHHHHHHHHhc-----CCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhh
Q 048743 88 ADLLQLDLLAKLSLSLARA-----QMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHL 162 (653)
Q Consensus 88 ~~~~~~~t~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~ 162 (653)
|...|-.+|-..+..|... +.++-.-..+..|.+.|+.-|..+|+.||..+-+..
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk-------------------- 121 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK-------------------- 121 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc--------------------
Confidence 3345777888877777653 445555666788899999999999998877554432
Q ss_pred hhhhcCCccCCCCchhhHHHHHHHHHhc-CChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCh-hhhHHHHHHhhh
Q 048743 163 SAEKSNGAELIKPDTMIFNLVLHACVRF-GSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQR-DELKKFKCYIDQ 240 (653)
Q Consensus 163 ~~a~~~~~~~~~~~~~~yn~li~~~~~~-g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~ 240 (653)
+.|. |.+=..+..- ..-+-+..++++|...|+.||..+-.+|++++++.+-. .+..++.-.|-+
T Consensus 122 ----------fiP~----nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 122 ----------FIPQ----NVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred ----------cccH----HHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 1121 1111222221 12345788999999999999999999999999987753 344555555544
Q ss_pred c
Q 048743 241 L 241 (653)
Q Consensus 241 ~ 241 (653)
.
T Consensus 188 f 188 (406)
T KOG3941|consen 188 F 188 (406)
T ss_pred h
Confidence 3
No 212
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=8.8 Score=41.03 Aligned_cols=99 Identities=9% Similarity=0.018 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 048743 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~ 556 (653)
.|+..+|.++-.+..- ||-..|---+.+++..+++++-+++-+.++. +.-|..++.+|.+.|+.++|.++
T Consensus 697 ~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KY 766 (829)
T KOG2280|consen 697 IGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKY 766 (829)
T ss_pred ccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhh
Confidence 6788888887666654 7888999999999999999998887776542 45577889999999999999999
Q ss_pred HHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 048743 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGY 598 (653)
Q Consensus 557 ~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~ 598 (653)
+.... +. .-...+|.+.|++.+|.++--+
T Consensus 767 iprv~------~l-------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 767 IPRVG------GL-------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhccC------Ch-------HHHHHHHHHhccHHHHHHHHHH
Confidence 84331 11 1567789999999998876543
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.04 E-value=6.6 Score=38.51 Aligned_cols=229 Identities=13% Similarity=0.013 Sum_probs=148.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHH
Q 048743 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG-HPMDSTT--YKSLLTAY 425 (653)
Q Consensus 349 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~--~~~li~~~ 425 (653)
.|.-..-+.|+.+.|...-+.....- +.-...+...+...|..|+++.|+++++.-.... +.+++.- -..|+.+-
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 44444557899998988888877665 4445568899999999999999999999875533 3444432 22333322
Q ss_pred HH---cCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHH
Q 048743 426 YK---VKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502 (653)
Q Consensus 426 ~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y 502 (653)
.. ..++..|...-.+- .++.||.....+... ..+.+.|++.++-.+++.+-+..-+|++ +
T Consensus 237 A~s~ldadp~~Ar~~A~~a--~KL~pdlvPaav~AA-------------ralf~d~~~rKg~~ilE~aWK~ePHP~i--a 299 (531)
T COG3898 237 AMSLLDADPASARDDALEA--NKLAPDLVPAAVVAA-------------RALFRDGNLRKGSKILETAWKAEPHPDI--A 299 (531)
T ss_pred HHHHhcCChHHHHHHHHHH--hhcCCccchHHHHHH-------------HHHHhccchhhhhhHHHHHHhcCCChHH--H
Confidence 21 13355555544333 446777633333221 2344589999999999999998755543 3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHh-cCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHH
Q 048743 503 NSSIYFFCKGKMIGDALKIYRRMQE-MKIRPT-VETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLL 580 (653)
Q Consensus 503 ~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li 580 (653)
.+..+.+.|+ .+++-+++... ..++|| ....-.+..+-...|++..|..--+... ...|....|-.|.
T Consensus 300 --~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~------r~~pres~~lLlA 369 (531)
T COG3898 300 --LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA------REAPRESAYLLLA 369 (531)
T ss_pred --HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh------hhCchhhHHHHHH
Confidence 3344466665 34444555443 345666 4556677788888999888776555443 5678888898887
Q ss_pred HHHH-hCCCHHHHHHHHHHHHhCCCCC
Q 048743 581 LNFL-QGGYFERVMEVIGYMKKQNMYV 606 (653)
Q Consensus 581 ~~~~-~~g~~~~a~~~~~~m~~~g~~p 606 (653)
+.-. ..|+-.++...+.+-.+.--.|
T Consensus 370 dIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 370 DIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 7744 5599999998888776553333
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.94 E-value=3.7 Score=37.37 Aligned_cols=143 Identities=16% Similarity=0.036 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCccc-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------HHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTL-CSDVIDALIQLGFLEAAHDILDDMELAGHPMD-------STT 417 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-------~~~ 417 (653)
..-.+..++.+.|+++.|...+++..+.. |.+... +...+.+.+.-....... ....| ...
T Consensus 44 A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~g~~~~~~~~~~~---------~~~~D~~~~~~A~~~ 112 (203)
T PF13525_consen 44 AQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYMLGLSYYKQIPGIL---------RSDRDQTSTRKAIEE 112 (203)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHHHHHHHH----------TT---HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHhCccch---------hcccChHHHHHHHHH
Confidence 45578889999999999999999998877 333321 444455444322222111 00111 235
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC
Q 048743 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS 497 (653)
Q Consensus 418 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p 497 (653)
+..++.-|-.+....+|...+..+.+. +.- +.-.+.+.|-+.|.+..|..-++.+.+.= |
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l~~~-la~-----------------~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y--p 172 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAELRNR-LAE-----------------HELYIARFYYKRGKYKAAIIRFQYVIENY--P 172 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHHHHH-HHH-----------------HHHHHHHHHHCTT-HHHHHHHHHHHHHHS--T
T ss_pred HHHHHHHCcCchHHHHHHHHHHHHHHH-HHH-----------------HHHHHHHHHHHcccHHHHHHHHHHHHHHC--C
Confidence 566677777777777887777666542 100 00012245677999999999999988753 4
Q ss_pred CH----HHHHHHHHHHHcCCCHHHHH
Q 048743 498 TI----YKLNSSIYFFCKGKMIGDAL 519 (653)
Q Consensus 498 ~~----~~y~~li~~~~~~g~~~~a~ 519 (653)
++ ...-.++.+|.+.|..+.+.
T Consensus 173 ~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 173 DTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCChHHHH
Confidence 33 34567888888888877443
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.92 E-value=5.2 Score=36.94 Aligned_cols=143 Identities=11% Similarity=0.005 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc-hhhHHHHhhHH
Q 048743 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-SCEMVVSERFS 461 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~~~~~l~ 461 (653)
.+.++..+--.|.+.-...++.++++...+-++.....|.+.-.+.|+.+.|...|++..+..-..+. .+.++...-.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~- 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS- 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh-
Confidence 44455555555566666666667666555556666666666666777777777777766543222222 1111110000
Q ss_pred HHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 048743 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFY 538 (653)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 538 (653)
.-.|--.++.-.|...+.++...+- -|+..-|.-.-+..-.|+...|++.++.|++. .|...+-+
T Consensus 259 ---------a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 ---------AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred ---------hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 0112235667777777777765542 14444454444445578888999999988875 44444434
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.57 E-value=3.6 Score=40.48 Aligned_cols=99 Identities=9% Similarity=-0.108 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhC-CCccCHH
Q 048743 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKI-----RPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESG-VLAVSRD 574 (653)
Q Consensus 501 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~p~~~ 574 (653)
.+..+-.++.-.|+++.|.+.|+.-...-+ .....+.-+|-++|.-..+++.|+.++..-..-.++. ...-..+
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 455666677777788888777776543211 1223344566677777777788877776543222221 2223455
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Q 048743 575 LYETLLLNFLQGGYFERVMEVIGYM 599 (653)
Q Consensus 575 ~y~~li~~~~~~g~~~~a~~~~~~m 599 (653)
.|.+|-.+|...|..++|+.+.+.-
T Consensus 317 acwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 6777777888888877777665544
No 217
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=2.9 Score=39.48 Aligned_cols=104 Identities=14% Similarity=0.098 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHH
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG---FLEAAHDILDDMELAGHPMDSTTYK 419 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~ 419 (653)
|...|-.|-..|...|+++.|..-|....+-. +++...+..+..++.... ...++..+|+++.... +-|+.+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 56799999999999999999999999999887 777777777777776653 3568999999998753 23667777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 420 SLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 420 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
.|-.++...|++.+|...|+.|.+. ..|+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~-lp~~~ 261 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL-LPADD 261 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc-CCCCC
Confidence 7888999999999999999999986 44554
No 218
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.13 E-value=3.8 Score=34.26 Aligned_cols=82 Identities=12% Similarity=-0.041 Sum_probs=59.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048743 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGEST---LCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY 425 (653)
Q Consensus 349 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (653)
.--....+.|++++|.+.|+.+..+- |.+.. +--.++.+|.+.++++.|...+++.++.+..-....|...+.|+
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ry--P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRY--PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC--CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 33444567899999999999998876 43333 25568899999999999999999998876544446677777777
Q ss_pred HHcCChH
Q 048743 426 YKVKMFR 432 (653)
Q Consensus 426 ~~~~~~~ 432 (653)
+.....+
T Consensus 93 ~~~~~~~ 99 (142)
T PF13512_consen 93 SYYEQDE 99 (142)
T ss_pred HHHHHhh
Confidence 6654433
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.99 E-value=1.8 Score=43.69 Aligned_cols=63 Identities=16% Similarity=0.096 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV----ETFYYLVYGHSSLEMYRDITILWGDIKR 562 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~~~~~~~~ 562 (653)
+...|+.+-.+|.+.|++++|+..|++.++. .|+. .+|..+-.+|...|+.++|+..++...+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777888888999999999999999987774 5663 3588888899999999999988887763
No 220
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.98 E-value=5 Score=34.75 Aligned_cols=103 Identities=10% Similarity=0.125 Sum_probs=76.2
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 048743 484 ESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRN 563 (653)
Q Consensus 484 ~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~ 563 (653)
.+.++.+...++.|+...|..+|+.+.+.|++.. +..+...++-||+......+-.+.. ....+.++=-.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 4566778889999999999999999999998665 5666677888888877766644443 334444444444433
Q ss_pred hhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 564 ~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
++ ..+..+++.+...|++-+|.++.+...
T Consensus 88 L~--------~~~~~iievLL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 88 LG--------TAYEEIIEVLLSKGQVLEALRYARQYH 116 (167)
T ss_pred hh--------hhHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 11 147778889999999999999998864
No 221
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.95 E-value=1.7 Score=40.44 Aligned_cols=88 Identities=8% Similarity=0.050 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC----------------HHHHHHH
Q 048743 498 TIYKLNSSIYFFCK-----GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEM----------------YRDITIL 556 (653)
Q Consensus 498 ~~~~y~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~----------------~~~a~~~ 556 (653)
|-.+|-+++..+.. .+.++-...-++.|.+.|++-|..+|+.|++.+=+-.- -+-++.+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 66677777777653 45677777788999999999999999999987765331 2234455
Q ss_pred HHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCH
Q 048743 557 WGDIKRNIESGVLAVSRDLYETLLLNFLQGGYF 589 (653)
Q Consensus 557 ~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~ 589 (653)
+++| +..|+.||..+-..++.++.+.+..
T Consensus 146 LeqM----E~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 146 LEQM----EWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHH----HHcCCCCchHHHHHHHHHhcccccc
Confidence 5444 4557777777777777777666653
No 222
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.85 E-value=17 Score=39.61 Aligned_cols=224 Identities=9% Similarity=-0.024 Sum_probs=93.9
Q ss_pred HHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcch----hhhHHHHHHHHHhccCCchhHHHHHHH
Q 048743 24 RKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHW----LQKACDLVLKIQKGKADLLQLDLLAKL 99 (653)
Q Consensus 24 ~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~t~~~l 99 (653)
.+|-.+.|.|++++|.++..+... ........+-..+..+..+.+... -.+...-+.+.. +..++.+.|-..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~---r~~~~~DpyK~A 191 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRI---RNSTDGDPYKRA 191 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHT---TT-TTS-HHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh---cCCCCCChHHHH
Confidence 567778899999999999966555 233445677888888877643221 223333333332 222322333333
Q ss_pred HHHHHhcCCC-chHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccc------cchHHHHHHHHHhhhhhhhhcCCccC
Q 048743 100 SLSLARAQMP-VPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTC------LASNFLIQLCDVFLHLSAEKSNGAEL 172 (653)
Q Consensus 100 i~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~ 172 (653)
+....-..++ ..-. ..+..+..-|-.+--.+++...... ....-+-+....+ ...-|..
T Consensus 192 vY~ilg~cD~~~~~~--------~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~-----Ge~~F~~- 257 (613)
T PF04097_consen 192 VYKILGRCDLSRRHL--------PEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKY-----GESHFNA- 257 (613)
T ss_dssp HHHHHHT--CCC-S---------TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT-
T ss_pred HHHHHhcCCccccch--------HHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHh-----chhhccc-
Confidence 3222222222 1000 0111112222222112222211110 0011111111122 2223333
Q ss_pred CCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHH
Q 048743 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQF 252 (653)
Q Consensus 173 ~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (653)
..+...| ...+.-.|.++.|.+.+-+ ..+...|.+.+.+.+..++-.+-.+... ..+......+..+ .-
T Consensus 258 -~~~p~~Y---f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~--ln 326 (613)
T PF04097_consen 258 -GSNPLLY---FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPP--LN 326 (613)
T ss_dssp -------H---HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT-----------------------------
T ss_pred -chhHHHH---HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCC--cC
Confidence 1222333 5566779999999999877 3345667777777777665333222222 2121111111000 12
Q ss_pred HHHHHHhhhc---cCCHHHHHHHHHHh
Q 048743 253 YESLLSLHFK---FDDIDAAGELILDM 276 (653)
Q Consensus 253 ~~~li~~~~~---~g~~~~A~~~~~~m 276 (653)
+..||..|++ ..|+.+|.++|--+
T Consensus 327 ~arLI~~Y~~~F~~td~~~Al~Y~~li 353 (613)
T PF04097_consen 327 FARLIGQYTRSFEITDPREALQYLYLI 353 (613)
T ss_dssp HHHHHHHHHHTTTTT-HHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 7788888876 46888999988777
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.84 E-value=1.4 Score=45.29 Aligned_cols=133 Identities=14% Similarity=0.068 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHH
Q 048743 177 TMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESL 256 (653)
Q Consensus 177 ~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 256 (653)
..-.+.+++-+-+.|.++.|+++-++- .+ =.....+.|+++.|.++.+.+.. ...|..|
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~~---rFeLAl~lg~L~~A~~~a~~~~~---------~~~W~~L 353 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDP---------DH---RFELALQLGNLDIALEIAKELDD---------PEKWKQL 353 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-H---------HH---HHHHHHHCT-HHHHHHHCCCCST---------HHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCCh---------HH---HhHHHHhcCCHHHHHHHHHhcCc---------HHHHHHH
Confidence 345888999999999999999885543 22 13344567999999888765432 2369999
Q ss_pred HHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHh
Q 048743 257 LSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFR 336 (653)
Q Consensus 257 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (653)
-+...+.|+++-|.+.|.+..
T Consensus 354 g~~AL~~g~~~lAe~c~~k~~----------------------------------------------------------- 374 (443)
T PF04053_consen 354 GDEALRQGNIELAEECYQKAK----------------------------------------------------------- 374 (443)
T ss_dssp HHHHHHTTBHHHHHHHHHHCT-----------------------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHhhc-----------------------------------------------------------
Confidence 999999999999999999983
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 048743 337 NGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405 (653)
Q Consensus 337 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 405 (653)
-|..|+-.|.-.|+.+...++.+.....+ . +|....++.-.|++++..+++.+
T Consensus 375 ---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~-~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 375 ---------DFSGLLLLYSSTGDREKLSKLAKIAEERG------D-INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ---------CccccHHHHHHhCCHHHHHHHHHHHHHcc------C-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 25678888999999998888888877766 2 78888888888999998887765
No 224
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.84 E-value=5.2 Score=33.74 Aligned_cols=27 Identities=7% Similarity=-0.020 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHcCc
Q 048743 97 AKLSLSLARAQMPVPASMILRLMLGRE 123 (653)
Q Consensus 97 ~~li~~~~~~g~~~~a~~~~~~m~~~g 123 (653)
..++..+...+.+......++.+...+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~ 37 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN 37 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC
Confidence 345556666666667777776666554
No 225
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.68 E-value=5.5 Score=33.59 Aligned_cols=45 Identities=7% Similarity=-0.110 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 048743 180 FNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMN 225 (653)
Q Consensus 180 yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 225 (653)
...+|..+...+.+.....+++.+...+. .+...++.++..+++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 44566666667777777777777766652 3444455555555543
No 226
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.50 E-value=8.9 Score=35.56 Aligned_cols=181 Identities=11% Similarity=0.003 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGEST---LCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS 420 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 420 (653)
..-|+. ...-.+.|++++|.+.|+.+..+. |.+.. +--.++.++-+.++++.|...+++.......-....|..
T Consensus 35 ~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~--p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 35 SELYNE-GLTELQKGNYEEAIKYFEALDSRH--PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHHcC--CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 334444 444567999999999999999877 43333 355567888889999999999999876543333344555
Q ss_pred HHHHHHHc-------CChHHHHHHHHHHHHc-CCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHH-HHH
Q 048743 421 LLTAYYKV-------KMFREAEALLKQMRKS-CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQ-EMR 491 (653)
Q Consensus 421 li~~~~~~-------~~~~~a~~~~~~m~~~-~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~m~ 491 (653)
-|.+++.. .+...+.+.|..+.+. .--|+..+.. +...-+..+. .+.
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~------------------------dA~~~i~~~~d~LA 167 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP------------------------DAKARIVKLNDALA 167 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh------------------------hHHHHHHHHHHHHH
Confidence 55555432 2333444444444331 1135431111 0011111111 111
Q ss_pred HccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048743 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT---VETFYYLVYGHSSLEMYRDITILWGDI 560 (653)
Q Consensus 492 ~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~~ 560 (653)
... -.+.+-|.+.|.+..|..-+++|.+. .+-+ ...+-.+..+|...|-.++|...-..+
T Consensus 168 ~~E--------m~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 168 GHE--------MAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHH--------HHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 111 23445667777777777777777765 2212 234455666777777777776665544
No 227
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.47 E-value=0.67 Score=33.78 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=51.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 387 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
-..|.+.++++.|.++++.+...+. .+...+...-..+.+.|++++|...|+...+. .|+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCc
Confidence 3578899999999999999998743 36777888888999999999999999999874 4554
No 228
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.40 E-value=2 Score=38.04 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHH
Q 048743 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV--ETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYE 577 (653)
Q Consensus 500 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~ 577 (653)
..+..+...|++.|+.+.|++.|.++.+.-..|.. ..+-.+|+.+...+++..+..++......+.. +-.++...--
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 45778899999999999999999999987666654 35678899999999999999999888765444 2223332222
Q ss_pred HHHHH--HHhCCCHHHHHHHHHHHH
Q 048743 578 TLLLN--FLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 578 ~li~~--~~~~g~~~~a~~~~~~m~ 600 (653)
....+ +...|++.+|-++|-+..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 22222 346789999998887764
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.36 E-value=4.6 Score=42.19 Aligned_cols=162 Identities=14% Similarity=0.034 Sum_probs=90.9
Q ss_pred hHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCc-----hhHHHHHHHHHHHHhc----CCCchHHHHHHHHHcCccCC
Q 048743 56 VVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADL-----LQLDLLAKLSLSLARA----QMPVPASMILRLMLGRENLP 126 (653)
Q Consensus 56 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~t~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p 126 (653)
.+..++..++-.|+ -+.+++++.+-.+..+.. .-.-.|..++..++.. ...+.|.++++.+.++ -|
T Consensus 190 ~~~kll~~vGF~gd---R~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP 264 (468)
T PF10300_consen 190 KVLKLLSFVGFSGD---RELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YP 264 (468)
T ss_pred HHHHHHhhcCcCCc---HHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CC
Confidence 44566666666666 356666666554433322 2344666666555543 3345666777776654 56
Q ss_pred CchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCC-------CCchhhHHHHHHHHHhcCChhhHHHH
Q 048743 127 CSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELI-------KPDTMIFNLVLHACVRFGSSLKGQHI 199 (653)
Q Consensus 127 ~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~yn~li~~~~~~g~~~~a~~l 199 (653)
+...|...-. ......|+++.|.+.|+... +.....|--+.-.+.-.+++++|.+.
T Consensus 265 ~s~lfl~~~g-----------------R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 265 NSALFLFFEG-----------------RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CcHHHHHHHH-----------------HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 6665554422 22223334444444444222 22334555566678889999999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHH-hcCCh-------hhhHHHHHHhhh
Q 048743 200 MELMSQTGVVADAHSIIILAQIHE-MNCQR-------DELKKFKCYIDQ 240 (653)
Q Consensus 200 ~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~-------~~a~~~~~~~~~ 240 (653)
|..+.+.. ..+..+|..+..+|. ..|+. ++|.+++..+..
T Consensus 328 f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 328 FLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999865 335555665544443 45555 555555555433
No 230
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.29 E-value=8.6 Score=38.49 Aligned_cols=141 Identities=10% Similarity=0.082 Sum_probs=80.3
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCch---hhHHHH
Q 048743 382 LCSDVIDALIQLGFLEAAHDILDDMELAG-HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS---CEMVVS 457 (653)
Q Consensus 382 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~~~ 457 (653)
+|...|..-.+..-++.|..+|-+..+.| +.+++..++++|.-++ .|++.-|..+|+.-... -||.. ...+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 36666666666666666666666666666 4556666666665444 35566666666554432 23331 111111
Q ss_pred hhHHHHhhhcccccccccccCCHHHHHHHHHH----HHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 048743 458 ERFSEVADKSASFTDTSSLMDKSDLAESLIQE----MREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT 533 (653)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 533 (653)
....++-+.|..+|+. +.+.. -...|..+|+-=...|++..|..+=++|.+. -|-
T Consensus 476 ----------------Li~inde~naraLFetsv~r~~~~q---~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQ 534 (660)
T COG5107 476 ----------------LIRINDEENARALFETSVERLEKTQ---LKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQ 534 (660)
T ss_pred ----------------HHHhCcHHHHHHHHHHhHHHHHHhh---hhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCc
Confidence 1125566666666663 22221 1346777888778888888888888887763 455
Q ss_pred HHHHHHHHHHHhc
Q 048743 534 VETFYYLVYGHSS 546 (653)
Q Consensus 534 ~~t~~~li~~~~~ 546 (653)
..+...+..-|.-
T Consensus 535 en~~evF~Sry~i 547 (660)
T COG5107 535 ENLIEVFTSRYAI 547 (660)
T ss_pred HhHHHHHHHHHhh
Confidence 5555555544443
No 231
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=92.22 E-value=2.1 Score=37.14 Aligned_cols=105 Identities=9% Similarity=-0.047 Sum_probs=81.7
Q ss_pred cchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHH
Q 048743 16 GSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDL 95 (653)
Q Consensus 16 ~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t 95 (653)
.|+...-.++..++.+.|+..+|...|++....-.-.++...-.+-++....++ ...|...++++++.++-..++++
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~---~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE---FAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc---HHHHHHHHHHHhhcCCccCCCCc
Confidence 456666777888999999999999999998873333445555556666655666 67889999998887766567777
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHcCc
Q 048743 96 LAKLSLSLARAQMPVPASMILRLMLGRE 123 (653)
Q Consensus 96 ~~~li~~~~~~g~~~~a~~~~~~m~~~g 123 (653)
.-.+...|.-.|.+.+|..-|+...+.-
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 7888899999999999999999888763
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.09 E-value=2.4 Score=42.81 Aligned_cols=65 Identities=8% Similarity=-0.134 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES---TLCSDVIDALIQLGFLEAAHDILDDMELA 409 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 409 (653)
+...++.+-.+|.+.|++++|+..|++..+.. |.+. .+|..+..+|.+.|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999988877 5554 34999999999999999999999999875
No 233
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.09 E-value=5.2 Score=34.65 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=32.7
Q ss_pred cCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHH
Q 048743 171 ELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQI 221 (653)
Q Consensus 171 ~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~ 221 (653)
.+++|+...|..+|+.+.+.|.+. .+.++.+.++.||+......+-.
T Consensus 23 ~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs 69 (167)
T PF07035_consen 23 HNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLS 69 (167)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHH
Confidence 556777788888888888888754 34555667777787776654433
No 234
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=92.04 E-value=2.3 Score=41.71 Aligned_cols=70 Identities=11% Similarity=-0.095 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCc-cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 048743 535 ETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLA-VSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604 (653)
Q Consensus 535 ~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 604 (653)
..|..|-+.|.-.|+++.|+...+.=.+..++.|-+ ...+.+..+-.+++-.|+++.|.+.++.-....+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 467777888888899999998877544444444433 2455677888899999999999999887654333
No 235
>PRK15331 chaperone protein SicA; Provisional
Probab=92.03 E-value=1.3 Score=37.95 Aligned_cols=89 Identities=8% Similarity=-0.054 Sum_probs=71.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 048743 352 NGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMF 431 (653)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 431 (653)
.-+...|++++|..+|+-+...+ +.+..-|..|-..+-..+++++|...|......+. -|+..+-..-.++...|+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 34557999999999999999877 66666566677777778999999999988755443 3555566677889999999
Q ss_pred HHHHHHHHHHHH
Q 048743 432 REAEALLKQMRK 443 (653)
Q Consensus 432 ~~a~~~~~~m~~ 443 (653)
+.|..-|+....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998877
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.79 E-value=9 Score=40.09 Aligned_cols=117 Identities=14% Similarity=0.066 Sum_probs=82.1
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHhccCCHHH
Q 048743 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYF-FCKGKMIGDALKIYRRMQEMK---IRPTVETFYYLVYGHSSLEMYRD 552 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~-~~~~g~~~~a~~~~~~m~~~g---~~p~~~t~~~li~~~~~~~~~~~ 552 (653)
....+.|.++++.+..+= |+...|.-.-.- +...|++++|++.|++..... .+.....+--+...+.-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 678889999999999864 777776554433 346899999999999766421 12334455666777888999999
Q ss_pred HHHHHHHHHHHhhhCCCccCHHHHHHHHHH-HHhCCCH-------HHHHHHHHHHH
Q 048743 553 ITILWGDIKRNIESGVLAVSRDLYETLLLN-FLQGGYF-------ERVMEVIGYMK 600 (653)
Q Consensus 553 a~~~~~~~~~~~~~~~~~p~~~~y~~li~~-~~~~g~~-------~~a~~~~~~m~ 600 (653)
|.+.|..+.+ ... .+..+|..+.-+ +...|+. ++|.++|.+..
T Consensus 324 A~~~f~~L~~---~s~--WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLK---ESK--WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHh---ccc--cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 9999998862 222 344455544333 4567777 88888888774
No 237
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.54 E-value=14 Score=35.80 Aligned_cols=133 Identities=14% Similarity=0.208 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc--CC----CHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHhccCCH
Q 048743 480 SDLAESLIQEMREEAALSTIYKLNSSIYFFCK--GK----MIGDALKIYRRMQEMKI---RPTVETFYYLVYGHSSLEMY 550 (653)
Q Consensus 480 ~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~--~g----~~~~a~~~~~~m~~~g~---~p~~~t~~~li~~~~~~~~~ 550 (653)
+++...+++.|.+.|..-+.++|-+..-.... .. ...+|.++|+.|++... .++-.++..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566677788888877776666553222222 22 25578888888887432 3445566666554 44444
Q ss_pred HHHHHHHHHHHHHhhhCCCccCH--HHHHHHHHHHHhC-CC--HHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048743 551 RDITILWGDIKRNIESGVLAVSR--DLYETLLLNFLQG-GY--FERVMEVIGYMKKQNMYVDKLMYKSEF 615 (653)
Q Consensus 551 ~~a~~~~~~~~~~~~~~~~~p~~--~~y~~li~~~~~~-g~--~~~a~~~~~~m~~~g~~p~~~t~~~l~ 615 (653)
+.-.+..+.+.+.+...|+..+- .....++ +++.. .. +.++.++++.+.+.|+++....|.++.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iL-aL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHIL-ALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 44333333333333444555433 2333333 33322 11 346778888888888887777777654
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.27 E-value=4.8 Score=37.58 Aligned_cols=102 Identities=21% Similarity=0.224 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCC----chhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCch-hHH
Q 048743 20 EVLLRKLESASKNHQVGEAWETFNDFQRLHGIPE----RHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLL-QLD 94 (653)
Q Consensus 20 ~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~ 94 (653)
..|+.- ..+.+.|++..|.+.|....+. .|+ +..+=||-.++...|+ .++|-.+|..+.+..|..| -++
T Consensus 143 ~~Y~~A-~~~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~---y~~Aa~~f~~~~k~~P~s~KApd 216 (262)
T COG1729 143 KLYNAA-LDLYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGD---YEDAAYIFARVVKDYPKSPKAPD 216 (262)
T ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhccc---chHHHHHHHHHHHhCCCCCCChH
Confidence 345544 4567889999999999998884 443 3567899999998888 7999999999988877666 458
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCch
Q 048743 95 LLAKLSLSLARAQMPVPASMILRLMLGRENLPCSD 129 (653)
Q Consensus 95 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 129 (653)
.+-.|.....+.|+.++|...|++..+. -|+..
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKR--YPGTD 249 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCCH
Confidence 8999999999999999999999999876 45543
No 239
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=90.68 E-value=13 Score=35.59 Aligned_cols=150 Identities=11% Similarity=0.020 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHHHccCCC-------------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHH
Q 048743 478 DKSDLAESLIQEMREEAALS-------------TIYKLNSSIYFFCKGKMIGDALKIYRRMQEM-KIRPTVETFYYLVYG 543 (653)
Q Consensus 478 ~~~~~a~~~~~~m~~~~~~p-------------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~ 543 (653)
++......++..+.+.++.| |...+|+|.. ....++++--+..++..+. |-.--.........-
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~--~neeki~eld~~iedaeenlGE~ev~ea~~~kaeY 113 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKK--ANEEKIKELDEKIEDAEENLGESEVREAMLRKAEY 113 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHH--hhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 35566667777777776655 3334444443 1222233333333333321 211122345556667
Q ss_pred HhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHhCCCCCC----HHhHHHHHHHh
Q 048743 544 HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLN-FLQGGYFERVMEVIGYMKKQNMYVD----KLMYKSEFLKH 618 (653)
Q Consensus 544 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~l~~~~ 618 (653)
||+.|+-+.|.+.++...+..-.-|.+.|+..+..-+.- |..+.-+.+-++..+.|.++|-..+ -.+|-.+.|..
T Consensus 114 ycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~ms 193 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMS 193 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHH
Confidence 899999999999998877666677888888776654422 4445556677777788888886554 56777788888
Q ss_pred hhhhHHhhhhh
Q 048743 619 HKHLYRRLKVS 629 (653)
Q Consensus 619 ~~~~~~~~~~~ 629 (653)
-+|+..|-.++
T Consensus 194 vR~Fk~Aa~Lf 204 (393)
T KOG0687|consen 194 VRNFKEAADLF 204 (393)
T ss_pred HHhHHHHHHHH
Confidence 88887664443
No 240
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.68 E-value=2.5 Score=39.98 Aligned_cols=77 Identities=13% Similarity=0.042 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL-----AGHPMDSTTYKS 420 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 420 (653)
++..++..+...|+++.+...++++.... |.+...|..+|.+|.+.|+...|...|+.+.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 56678888888888888888888888887 77777788888888888888888888887754 577777777666
Q ss_pred HHHH
Q 048743 421 LLTA 424 (653)
Q Consensus 421 li~~ 424 (653)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 241
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.66 E-value=3.3 Score=39.26 Aligned_cols=82 Identities=9% Similarity=-0.047 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-HhhhCCCccCHHHHHH
Q 048743 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR-NIESGVLAVSRDLYET 578 (653)
Q Consensus 500 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~p~~~~y~~ 578 (653)
.++..++..+...|+.+.+.+.++++.... +-|...|..+|.+|.+.|+...|+..++.+.+ ..++.|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 467788889999999999999999998863 45788899999999999999999999988876 5577789998888776
Q ss_pred HHHH
Q 048743 579 LLLN 582 (653)
Q Consensus 579 li~~ 582 (653)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6665
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.57 E-value=4 Score=34.15 Aligned_cols=89 Identities=9% Similarity=-0.000 Sum_probs=62.3
Q ss_pred ccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCC--CchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchh
Q 048743 15 EGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIP--ERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQ 92 (653)
Q Consensus 15 ~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 92 (653)
+.|....|. -.....+.|++++|.+.|+.+....... ....--.++.++.+.++ .++|...++++++.+|..|+
T Consensus 7 ~~~~~~ly~-~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~---y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 7 DKSPQELYQ-EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD---YEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred CCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCCC
Confidence 344444444 4455678899999999999998853221 12355778888888888 79999999999988888775
Q ss_pred HHHHHHHHHHHHhcCC
Q 048743 93 LDLLAKLSLSLARAQM 108 (653)
Q Consensus 93 ~~t~~~li~~~~~~g~ 108 (653)
..|...+.+++....
T Consensus 83 -vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 83 -VDYAYYMRGLSYYEQ 97 (142)
T ss_pred -ccHHHHHHHHHHHHH
Confidence 345555556555443
No 243
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.34 E-value=3.7 Score=38.84 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=80.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 048743 338 GKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHH--SFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDS 415 (653)
Q Consensus 338 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 415 (653)
+|...+..+...++..-....+.+.+...+-+++.... ..++.. -..+++- +-.=++++++.++..=.+-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irl-llky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHH-HHccChHHHHHHHhCcchhccccch
Confidence 45555666667777777778888999988888776442 233333 2333333 3345788999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 048743 416 TTYKSLLTAYYKVKMFREAEALLKQMRKSCL 446 (653)
Q Consensus 416 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 446 (653)
.+++.+|+.+.+.+++.+|.++.-.|.....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998877776543
No 244
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.01 E-value=4.4 Score=35.83 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH--HHHHHHHHHhcCChhhhHHHHHHhhhcCCC----cccchhH
Q 048743 178 MIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS--IIILAQIHEMNCQRDELKKFKCYIDQLSTP----FAHHYQQ 251 (653)
Q Consensus 178 ~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~ 251 (653)
..+..+..-|++.|+.+.|++.|.++.+....|.... +-.++..+.-.+++..+............. ....-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4688899999999999999999999999876666555 668888999999999998887777654321 2221123
Q ss_pred HHHHHHHhhhccCCHHHHHHHHHHh
Q 048743 252 FYESLLSLHFKFDDIDAAGELILDM 276 (653)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~m 276 (653)
+|..|... ..+++..|-+.|-+.
T Consensus 117 ~~~gL~~l--~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANL--AQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHH--HhchHHHHHHHHHcc
Confidence 44444443 358899998888777
No 245
>PRK15331 chaperone protein SicA; Provisional
Probab=89.81 E-value=6.4 Score=33.85 Aligned_cols=84 Identities=7% Similarity=-0.083 Sum_probs=64.7
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 048743 476 LMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITI 555 (653)
Q Consensus 476 ~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 555 (653)
..|++++|..+|.-+.-.+. -|..-|..|-.+|-..+++++|+..|......+. -|...+-..-.++...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 48999999999998887553 2556677777777788999999999988766442 244445556788889999999999
Q ss_pred HHHHHH
Q 048743 556 LWGDIK 561 (653)
Q Consensus 556 ~~~~~~ 561 (653)
.|....
T Consensus 127 ~f~~a~ 132 (165)
T PRK15331 127 CFELVN 132 (165)
T ss_pred HHHHHH
Confidence 997775
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.74 E-value=7.2 Score=31.81 Aligned_cols=92 Identities=14% Similarity=-0.069 Sum_probs=71.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHc
Q 048743 352 NGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTT---YKSLLTAYYKV 428 (653)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~ 428 (653)
-+.+..|+++.|++.|.+...-- |.+...||.-..++.-.|+.++|+.=+++..+..-.-+... |..--..|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 35678999999999999987765 77888899999999999999999999988866422223332 22233356778
Q ss_pred CChHHHHHHHHHHHHcC
Q 048743 429 KMFREAEALLKQMRKSC 445 (653)
Q Consensus 429 ~~~~~a~~~~~~m~~~~ 445 (653)
|+-+.|..=|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 99999999998887766
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.42 E-value=12 Score=37.16 Aligned_cols=120 Identities=11% Similarity=0.001 Sum_probs=83.5
Q ss_pred HHHcCCCHHHHHHHHHHHHh-----cCCCC---------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCH
Q 048743 508 FFCKGKMIGDALKIYRRMQE-----MKIRP---------TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR 573 (653)
Q Consensus 508 ~~~~~g~~~~a~~~~~~m~~-----~g~~p---------~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~ 573 (653)
.|.+.|++..|..-|++... .+..+ -..++..|.-+|.+.+++..|++..+..+.. -.+|.
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-----~~~N~ 291 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-----DPNNV 291 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----CCCch
Confidence 45677888887777776543 11111 2246777888899999999999999887632 24466
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHh----hhhhHHhhhhhHHHHH
Q 048743 574 DLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKH----HKHLYRRLKVSNARTE 634 (653)
Q Consensus 574 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~----~~~~~~~~~~~~~~~~ 634 (653)
...-.=-++|...|+++.|...|+.++ .+.|+....+.-+.++ ..-..+..++...|+.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~--k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKAL--KLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666667788999999999999999998 4578887777755222 2233344556666665
No 248
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=89.41 E-value=25 Score=35.28 Aligned_cols=71 Identities=11% Similarity=-0.012 Sum_probs=48.1
Q ss_pred ccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 048743 472 DTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL 547 (653)
Q Consensus 472 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 547 (653)
+-|-..|++.+|...++++.-.-+ -....+.+++.+.-+.|+-...++++++.-..| .+|-+.+-.+|.+.
T Consensus 517 eEY~~~GdisEA~~CikeLgmPfF-hHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~RV 587 (645)
T KOG0403|consen 517 EEYELSGDISEACHCIKELGMPFF-HHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFERV 587 (645)
T ss_pred HHHHhccchHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhhh
Confidence 345567888888888777654211 155678888888888888877888887776654 34555666666554
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.19 E-value=26 Score=36.00 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=28.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 048743 505 SIYFFCKGKMIGDALKIYRRMQEMKIR-PTVETFYYLVYGHSSLEMYRDITILWGD 559 (653)
Q Consensus 505 li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~~~~~~a~~~~~~ 559 (653)
+-.++-+.|+.++|.+.|++|.+..-. -+......|+.++...+.+.++..++..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 444444556666666666666543211 1223444556666666666666555543
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.07 E-value=11 Score=36.24 Aligned_cols=82 Identities=6% Similarity=-0.022 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHhccCCHHHH
Q 048743 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM---KIRPTVETFYYLVYGHSSLEMYRDI 553 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~li~~~~~~~~~~~a 553 (653)
+|-+++|++.-++-.+.+- -|...-.+....+-..|++.++.++..+-... +--.-..-|-...-.+...+.++.|
T Consensus 188 ~g~y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred hccchhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 3444444444433333220 14555556666666777777777766553321 1111122333333344556777777
Q ss_pred HHHHHH
Q 048743 554 TILWGD 559 (653)
Q Consensus 554 ~~~~~~ 559 (653)
+++|+.
T Consensus 267 leIyD~ 272 (491)
T KOG2610|consen 267 LEIYDR 272 (491)
T ss_pred HHHHHH
Confidence 777764
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.01 E-value=1.2 Score=28.65 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccH
Q 048743 347 MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLC 383 (653)
Q Consensus 347 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 383 (653)
+..+-.+|.+.|++++|.++|++..+.. |.+...+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~ 38 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD--PDDPEAW 38 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHH
Confidence 4455555666666666666666665555 4444433
No 252
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.98 E-value=19 Score=33.40 Aligned_cols=134 Identities=12% Similarity=0.024 Sum_probs=93.7
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH-----HHhccCCHH
Q 048743 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY-----GHSSLEMYR 551 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~-----~~~~~~~~~ 551 (653)
.+.+.-...++++..+...+-++.....|.+.-.+.|+.+.|...|++..+..-+.|..+++.++. .+.-++++.
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 455666777788888766544778888888888899999999999998877655667666666554 344566788
Q ss_pred HHHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHh
Q 048743 552 DITILWGDIKRNIESGVLAV-SRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKH 618 (653)
Q Consensus 552 ~a~~~~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~ 618 (653)
.|...++++.+. .| |...-|.=.-++.-.|+..+|++.++.|... .|...+-++++..+
T Consensus 270 ~a~r~~~~i~~~------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 270 EAHRFFTEILRM------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNL 329 (366)
T ss_pred HHHHHHhhcccc------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHH
Confidence 888888777522 22 3333333333445578999999999999854 56666666666443
No 253
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.50 E-value=40 Score=36.40 Aligned_cols=296 Identities=13% Similarity=0.068 Sum_probs=147.1
Q ss_pred CCchhHHHHH-----HHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhh
Q 048743 88 ADLLQLDLLA-----KLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHL 162 (653)
Q Consensus 88 ~~~~~~~t~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~ 162 (653)
|...+..-|. .+|+-+...+.+..|+++-..+...-... ...|.......++.. ......+++.... ++
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~---d~~d~~vld~I~~--kl 500 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQS---DKMDEEVLDKIDE--KL 500 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhcc---CccchHHHHHHHH--Hh
Confidence 3444555444 47888889999999999988775432222 344443333333221 1111111111111 00
Q ss_pred hhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC----CccHHHHHHHHHHHHhcCChhhhHHHHHHh
Q 048743 163 SAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGV----VADAHSIIILAQIHEMNCQRDELKKFKCYI 238 (653)
Q Consensus 163 ~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~----~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 238 (653)
... --..++|..+.+-.-..|+++-|..+++.=...+. ..+..-+...+.-+.+.|+.+-..+++-.+
T Consensus 501 -------s~~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhl 572 (829)
T KOG2280|consen 501 -------SAK-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHL 572 (829)
T ss_pred -------ccc-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHH
Confidence 011 13456788888878889999999888775443331 112223455666677777777777776665
Q ss_pred hhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhh
Q 048743 239 DQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELL 318 (653)
Q Consensus 239 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (653)
.+.... ..+.. -..+...|..++.+++++.+-..--.. +.........+.+..
T Consensus 573 k~~~~~------s~l~~------~l~~~p~a~~lY~~~~r~~~~~~l~d~---y~q~dn~~~~a~~~~------------ 625 (829)
T KOG2280|consen 573 KNKLNR------SSLFM------TLRNQPLALSLYRQFMRHQDRATLYDF---YNQDDNHQALASFHL------------ 625 (829)
T ss_pred HHHHHH------HHHHH------HHHhchhhhHHHHHHHHhhchhhhhhh---hhcccchhhhhhhhh------------
Confidence 543200 00111 112334455566555432221100000 000000000000000
Q ss_pred HHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhcC-CCCCCcccHHHHH
Q 048743 319 EKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGK----------NSELSWLLLSIKKEH-HSFGESTLCSDVI 387 (653)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~-~~~~~~~~~~~li 387 (653)
..++......+..|+.. ..-++|.+... ..+-+++.+.+..+- +...+.. .+.-+
T Consensus 626 ----------q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlS-l~dTv 691 (829)
T KOG2280|consen 626 ----------QASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLS-LHDTV 691 (829)
T ss_pred ----------hhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCc-HHHHH
Confidence 00000000123334433 22333433332 122233333443332 2344444 77778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048743 388 DALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMR 442 (653)
Q Consensus 388 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 442 (653)
.-+..-|+..+|.++-.+.+- ||...|-.-+.+++..+++++-+++-+.++
T Consensus 692 ~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 692 TTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 888889999999888776543 688888888999999999988777655554
No 254
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.34 E-value=29 Score=34.61 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=25.7
Q ss_pred HcCCCHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048743 510 CKGKMIGDALKIYRRMQE---MKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560 (653)
Q Consensus 510 ~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 560 (653)
.+.|++.+|.+.|.+.+. .++.|+...|.....+..+.|+.++|+.-.+..
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 345555555555555543 234444445555555555555555555544433
No 255
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.88 E-value=10 Score=36.09 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=75.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHH
Q 048743 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC---LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES 485 (653)
Q Consensus 409 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~ 485 (653)
.|.+....+-..++..-....+++.+..++-.++... ..|..+...+.. ++. .-+.+.+.-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-----lll-----------ky~pq~~i~ 121 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-----LLL-----------KYDPQKAIY 121 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-----HHH-----------ccChHHHHH
Confidence 4555566666777766666778888888887776531 223322222222 222 346678888
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 048743 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529 (653)
Q Consensus 486 ~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 529 (653)
++..=...|+.||.++++.+|+.+.+.+++.+|..+.-.|....
T Consensus 122 ~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 122 TLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999988887643
No 256
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.80 E-value=27 Score=33.64 Aligned_cols=104 Identities=15% Similarity=-0.012 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc----C---CCCCC-----cccHHHHHHHHHHcCCHH---HHHHHHHHHHHCC
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKE----H---HSFGE-----STLCSDVIDALIQLGFLE---AAHDILDDMELAG 410 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~---~~~~~-----~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g 410 (653)
.|+.-...+.+..+++.|...+++..+- + ...++ ..+...++.+|...+..+ +|.++++.+....
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence 3454444444443777777776654332 1 11122 123566777787777655 5666666664432
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 411 HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 411 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
+-.+..|-.-+..+.+.++.+.+.+.+..|...-..++.
T Consensus 118 -~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~ 156 (278)
T PF08631_consen 118 -GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSES 156 (278)
T ss_pred -CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccc
Confidence 223455555677777789999999999999886333444
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.76 E-value=11 Score=35.16 Aligned_cols=101 Identities=13% Similarity=0.153 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHH
Q 048743 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI--RPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLY 576 (653)
Q Consensus 499 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y 576 (653)
...|+.-+..| +.|++..|..-|...++... .-....+-.|..++...|++++|..+|..+.+...+....| ..+
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp--dal 218 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP--DAL 218 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh--HHH
Confidence 34688888765 47779999999999997521 11223455688999999999999999988875433322222 456
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC
Q 048743 577 ETLLLNFLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 577 ~~li~~~~~~g~~~~a~~~~~~m~~~ 602 (653)
--|.....+.|+.++|-.+|++..++
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 66777889999999999999999865
No 258
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=87.62 E-value=14 Score=30.28 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=19.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048743 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557 (653)
Q Consensus 503 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 557 (653)
+..++.+...|+-++-.++++++.. +-+|++.....+-.+|.+.|+..++.+++
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 3334444444444444444444332 12333333344444444444444444443
No 259
>PRK11906 transcriptional regulator; Provisional
Probab=87.54 E-value=36 Score=34.78 Aligned_cols=167 Identities=10% Similarity=0.061 Sum_probs=103.0
Q ss_pred HHH--HHHHHHHHHcC-----ChHHHHHHHHHHHH-cCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHH
Q 048743 416 TTY--KSLLTAYYKVK-----MFREAEALLKQMRK-SCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLI 487 (653)
Q Consensus 416 ~~~--~~li~~~~~~~-----~~~~a~~~~~~m~~-~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~ 487 (653)
..| ...+.|..... ..+.|+.+|.+... ..+.|+.. ...|..+.|.....+...........+|.++-
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a----~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A 327 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT----ECYCLLAECHMSLALHGKSELELAAQKALELL 327 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH----HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 456 56666665522 35677888888773 34566641 11122222221111111111345566677777
Q ss_pred HHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 048743 488 QEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV-ETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565 (653)
Q Consensus 488 ~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 565 (653)
+.-.+.+ | |......+-.+..-.++++.|..+|++... +.||. .+|...-..+.-.|+.++|.+.++...
T Consensus 328 ~rAveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al---- 399 (458)
T PRK11906 328 DYVSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSL---- 399 (458)
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh----
Confidence 7777765 4 777777777777788889999999998776 46774 455555666778999999999998754
Q ss_pred hCCCccCHH---HHHHHHHHHHhCCCHHHHHHHHH
Q 048743 566 SGVLAVSRD---LYETLLLNFLQGGYFERVMEVIG 597 (653)
Q Consensus 566 ~~~~~p~~~---~y~~li~~~~~~g~~~~a~~~~~ 597 (653)
...|... +....|+.|+..+ .++|+.++-
T Consensus 400 --rLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 400 --QLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred --ccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 3455433 3344455677655 677777764
No 260
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.70 E-value=65 Score=36.92 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=49.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcc--cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048743 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGEST--LCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426 (653)
Q Consensus 349 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (653)
..+.+|-.+|+|.+|..+..++.... +.. +-..|+.-+...++.-+|-++..+.... | .-.+..|+
T Consensus 970 kAl~a~~~~~dWr~~l~~a~ql~~~~----de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ 1037 (1265)
T KOG1920|consen 970 KALKAYKECGDWREALSLAAQLSEGK----DELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLC 1037 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHhhcCCH----HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHh
Confidence 45677777888888888877765322 222 1255667777777777777777665543 1 22344566
Q ss_pred HcCChHHHHHHHHH
Q 048743 427 KVKMFREAEALLKQ 440 (653)
Q Consensus 427 ~~~~~~~a~~~~~~ 440 (653)
+...|++|..+-..
T Consensus 1038 ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1038 KAKEWEEALRVASK 1051 (1265)
T ss_pred hHhHHHHHHHHHHh
Confidence 66667777665543
No 261
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.57 E-value=37 Score=33.92 Aligned_cols=217 Identities=12% Similarity=-0.029 Sum_probs=121.2
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048743 353 GYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ--LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKM 430 (653)
Q Consensus 353 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 430 (653)
++.-.|+.++|..+--.+.+.. +. ..+..++++.+- .++.+.|...|++-+..+ |+...-..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~---------- 241 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--AT--NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKS---------- 241 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--cc--hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHh----------
Confidence 3445677777777766666544 22 224555554443 466777777777655432 33222111
Q ss_pred hHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHH---ccCCCCHHHHHHHHH
Q 048743 431 FREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE---EAALSTIYKLNSSIY 507 (653)
Q Consensus 431 ~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~y~~li~ 507 (653)
.-.-.+.++.+...|-. ..+.|++..|.+.+.+-.. .+..|+...|-..-.
T Consensus 242 ~~~~~k~le~~k~~gN~--------------------------~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGND--------------------------AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred HhhhHHHHHHHHhhhhh--------------------------HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 11112222333333211 1246777777777766553 344557777888888
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHH-HH--HHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHH
Q 048743 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYY-LV--YGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFL 584 (653)
Q Consensus 508 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-li--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~ 584 (653)
...+.|+.++|+.--++... .|..-.-. +. .++...++|++|.+-++...+. ..-.....++.-...++-
T Consensus 296 v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~---~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL---EKDCEIRRTLREAQLALK 368 (486)
T ss_pred hhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccchHHHHHHHHHHHH
Confidence 88899999999988776654 34332222 22 2344567788888888776533 222334455555555555
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHhh
Q 048743 585 QGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHH 619 (653)
Q Consensus 585 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~ 619 (653)
+..+ +.=..++.--+..-..|+...|..+....|
T Consensus 369 kSkR-kd~ykilGi~~~as~~eikkayrk~AL~~H 402 (486)
T KOG0550|consen 369 KSKR-KDWYKILGISRNASDDEIKKAYRKLALVHH 402 (486)
T ss_pred Hhhh-hhHHHHhhhhhhcccchhhhHHHHHHHHhC
Confidence 4433 233445554555556778888877775555
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=86.55 E-value=11 Score=30.77 Aligned_cols=91 Identities=5% Similarity=-0.088 Sum_probs=62.4
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHH---HHHHHHHHHH
Q 048743 508 FFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD---LYETLLLNFL 584 (653)
Q Consensus 508 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~---~y~~li~~~~ 584 (653)
+++..|+++.|++.|.+.... .+-+...||.-.+++.-.|+.++|+.=+++..+. .|-+ +.. .|----..|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL---ag~~-trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALEL---AGDQ-TRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHh---cCcc-chHHHHHHHHHHHHHH
Confidence 456788999999999887764 2335677888888999999988888877776643 2222 222 2222223366
Q ss_pred hCCCHHHHHHHHHHHHhCC
Q 048743 585 QGGYFERVMEVIGYMKKQN 603 (653)
Q Consensus 585 ~~g~~~~a~~~~~~m~~~g 603 (653)
..|+-+.|..=|+..-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 7788888888887776666
No 263
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=86.52 E-value=17 Score=29.91 Aligned_cols=121 Identities=7% Similarity=0.031 Sum_probs=68.6
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-cC----------------CCCCHHHHHH
Q 048743 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE-MK----------------IRPTVETFYY 539 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-~g----------------~~p~~~t~~~ 539 (653)
.|.+++..+++.+..... +..-||-.|--....-+-+-..++++..=. .. ...+...+..
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~ 91 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDL 91 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHH
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHH
Confidence 578888888888877653 344444444333333333333333333211 00 1124445566
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 048743 540 LVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMY 605 (653)
Q Consensus 540 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 605 (653)
.+......|+-|.-.++..++. + .-.+++...-.+..+|.+-|+..++.+++.+..++|++
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~---k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELK---K--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH----------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhccHHHHHHHHHHHh---h--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 6777777777777777776654 1 34566777777888999999999999999999988873
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.23 E-value=69 Score=36.74 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=12.8
Q ss_pred HHHHhhhccCCHHHHHHHHHHh
Q 048743 255 SLLSLHFKFDDIDAAGELILDM 276 (653)
Q Consensus 255 ~li~~~~~~g~~~~A~~~~~~m 276 (653)
.-+.+|-.+|++.+|+.+-.++
T Consensus 970 kAl~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 970 KALKAYKECGDWREALSLAAQL 991 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHhh
Confidence 3445555566666666666555
No 265
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=86.06 E-value=23 Score=33.34 Aligned_cols=99 Identities=13% Similarity=0.008 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHH-HHHHhCCCHHHHHHHHHHHHhCCCCCC--
Q 048743 531 RPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLL-LNFLQGGYFERVMEVIGYMKKQNMYVD-- 607 (653)
Q Consensus 531 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~-- 607 (653)
.--...+..+..-|+..++.+.+.++.++..+..-+.|.+.|+...-+-+ -.|....-+++-++..+.|.++|-..+
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 33456677788899999999999999998877767778888775443322 224445557888899999999987554
Q ss_pred --HHhHHHHHHHhhhhhHHhhhhh
Q 048743 608 --KLMYKSEFLKHHKHLYRRLKVS 629 (653)
Q Consensus 608 --~~t~~~l~~~~~~~~~~~~~~~ 629 (653)
-.+|..+.|...+++..|-.+.
T Consensus 192 NRyK~Y~Gi~~m~~RnFkeAa~Ll 215 (412)
T COG5187 192 NRYKVYKGIFKMMRRNFKEAAILL 215 (412)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHH
Confidence 4677777777777777664443
No 266
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.03 E-value=18 Score=35.88 Aligned_cols=97 Identities=11% Similarity=-0.073 Sum_probs=74.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCC----C---------CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048743 351 INGYKKHGKNSELSWLLLSIKKEHH----S---------FGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTT 417 (653)
Q Consensus 351 i~~~~~~~~~~~a~~~~~~m~~~~~----~---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 417 (653)
-+.|.+.|++..|..-|+.....-. . ..-..++..+.-.|.+.+++..|++.-...+... ++|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 3456788888888888777432110 0 1112348888889999999999999999988764 357777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 418 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
.-.--.+|...|+++.|...|+.+.+ +.|+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k--~~P~N 324 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK--LEPSN 324 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH--hCCCc
Confidence 77778899999999999999999988 57876
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.70 E-value=36 Score=32.94 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=98.8
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HH--HHHHHHHHHcCCh
Q 048743 356 KHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST--TY--KSLLTAYYKVKMF 431 (653)
Q Consensus 356 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~--~~li~~~~~~~~~ 431 (653)
-.|++.+|-..++++.+.. |.|...++..=++|.-.|+.+.-...+++.... ..||.. +| ....-++...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4788889999999998887 888888999999999999999999999988654 233442 33 3344466778999
Q ss_pred HHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHc---cCCCCHHHHHHHHHH
Q 048743 432 REAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE---AALSTIYKLNSSIYF 508 (653)
Q Consensus 432 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~y~~li~~ 508 (653)
++|++.-++..+ +.|......-...-+++ ..|+..++.++..+-.+. +--.-..-|=...-.
T Consensus 192 ~dAEk~A~ralq--iN~~D~Wa~Ha~aHVle-------------m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~ 256 (491)
T KOG2610|consen 192 DDAEKQADRALQ--INRFDCWASHAKAHVLE-------------MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALF 256 (491)
T ss_pred hhHHHHHHhhcc--CCCcchHHHHHHHHHHH-------------hcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHh
Confidence 999888776655 33433211111111111 267788887776554321 100011222223334
Q ss_pred HHcCCCHHHHHHHHHHHH
Q 048743 509 FCKGKMIGDALKIYRRMQ 526 (653)
Q Consensus 509 ~~~~g~~~~a~~~~~~m~ 526 (653)
+...+.++.|+++|..=+
T Consensus 257 ~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 257 HIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhcccchhHHHHHHHHHH
Confidence 556789999999998544
No 268
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.62 E-value=8.4 Score=36.47 Aligned_cols=110 Identities=11% Similarity=0.027 Sum_probs=80.4
Q ss_pred ccchhHHHHHHHHhhh-hcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCc
Q 048743 32 NHQVGEAWETFNDFQR-LHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPV 110 (653)
Q Consensus 32 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~ 110 (653)
..-+-+|+++|+.... .....++.+...+|+.+..-.+. ....-.++..-+..+.+..++..+...+|..+++.+++.
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~-~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENT-KLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcccc-chhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 3456677888884322 23456777888888888762221 244444555445555567789999999999999999999
Q ss_pred hHHHHHHHHHcC-ccCCCchhHHHHHHHHhhcc
Q 048743 111 PASMILRLMLGR-ENLPCSDLLLLVFVHMVKTE 142 (653)
Q Consensus 111 ~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~ 142 (653)
+-.++.+.-... +..-|...|..+|+.+..+|
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sg 252 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESG 252 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcC
Confidence 999999887765 67788889999988888876
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.55 E-value=1.9 Score=26.21 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Q 048743 502 LNSSIYFFCKGKMIGDALKIYRRM 525 (653)
Q Consensus 502 y~~li~~~~~~g~~~~a~~~~~~m 525 (653)
|+.|-..|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455556666666666666666653
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.41 E-value=1.7 Score=26.37 Aligned_cols=26 Identities=15% Similarity=-0.017 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHH
Q 048743 179 IFNLVLHACVRFGSSLKGQHIMELMS 204 (653)
Q Consensus 179 ~yn~li~~~~~~g~~~~a~~l~~~m~ 204 (653)
+|+.|-+.|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
No 271
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.32 E-value=24 Score=38.54 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048743 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK 427 (653)
Q Consensus 348 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 427 (653)
..|+.+|.+.++.++-.++.+... .|...-| ....+..+.+.+-.++|..+-..... +...... .+-.
T Consensus 435 tlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~ 502 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLED 502 (933)
T ss_pred HHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHH
Confidence 456666666666665555555443 2211111 34455555555555555444433222 1222222 2333
Q ss_pred cCChHHHHHHHHHH
Q 048743 428 VKMFREAEALLKQM 441 (653)
Q Consensus 428 ~~~~~~a~~~~~~m 441 (653)
.+++++|++++..|
T Consensus 503 ~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 503 LHNYEEALRYISSL 516 (933)
T ss_pred hcCHHHHHHHHhcC
Confidence 45666666665543
No 272
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.26 E-value=7 Score=35.09 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL--AGHPMDSTTYKSLLT 423 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~~~~li~ 423 (653)
|.+.-+..+.+.+.+.+|+...++-.+.. |.+...-..+++.||-.|++++|..-++-... ....+-..+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34556777888999999999998888777 88888889999999999999999887776643 234455677887776
Q ss_pred HH
Q 048743 424 AY 425 (653)
Q Consensus 424 ~~ 425 (653)
+-
T Consensus 81 ~e 82 (273)
T COG4455 81 CE 82 (273)
T ss_pred HH
Confidence 53
No 273
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.56 E-value=42 Score=32.00 Aligned_cols=50 Identities=6% Similarity=0.060 Sum_probs=23.1
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCChhhhHHHHHHh
Q 048743 187 CVRFGSSLKGQHIMELMSQTGVVAD-AHSIIILAQIHEMNCQRDELKKFKCYI 238 (653)
Q Consensus 187 ~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~ 238 (653)
....|++.+|..+|+...... |+ ...-..+..++...|+.+.|..++..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 344555666666555555431 11 122333444444445544444444443
No 274
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.89 E-value=7.9 Score=29.69 Aligned_cols=47 Identities=6% Similarity=-0.026 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 515 IGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 515 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
.-++.+-++.+....+.|+.....+-+++|.+.+++..|.++|+.++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455555555566667777777777777777777777777776554
No 275
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.35 E-value=14 Score=28.66 Aligned_cols=45 Identities=7% Similarity=0.034 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 517 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
+..+-++.+....+.|+.....+.+++|.+.+++..|.++|+.++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455555666666677777777777777777777777777777665
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.18 E-value=33 Score=29.79 Aligned_cols=30 Identities=10% Similarity=0.003 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 048743 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRP 532 (653)
Q Consensus 503 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 532 (653)
.+|--+-.+.|++.+|.++|..+......|
T Consensus 171 EALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 344444456666666666666665543333
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.77 E-value=43 Score=30.90 Aligned_cols=92 Identities=17% Similarity=0.053 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEH----HSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG---HPMDSTTY 418 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~ 418 (653)
-|..+-..+.+...+++|-..|.+-.... ..+..-..|-..|-.|....|+..|...+++-.+.+ -+-+..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 45556666677777777665554422111 011111224455556666789999999998854432 12255678
Q ss_pred HHHHHHHHHcCChHHHHHHH
Q 048743 419 KSLLTAYYKVKMFREAEALL 438 (653)
Q Consensus 419 ~~li~~~~~~~~~~~a~~~~ 438 (653)
..|+.+|- .|+.+++..++
T Consensus 232 enLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhc-cCCHHHHHHHH
Confidence 88888874 47777765554
No 278
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=81.31 E-value=6.4 Score=25.12 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048743 383 CSDVIDALIQLGFLEAAHDILDDMELA 409 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 409 (653)
|..+-.+|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555566666666666555553
No 279
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=81.15 E-value=17 Score=30.62 Aligned_cols=86 Identities=6% Similarity=0.003 Sum_probs=60.4
Q ss_pred hHHHHHHHhhccCCcchhhhHHHHHHHHHhc-cCCchhHHHHHHHHHHHHhcCCC-chHHHHHHHHHcCccCCCchhHHH
Q 048743 56 VVNRFITDLCYSAEPHWLQKACDLVLKIQKG-KADLLQLDLLAKLSLSLARAQMP-VPASMILRLMLGRENLPCSDLLLL 133 (653)
Q Consensus 56 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~t~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ 133 (653)
-.|.+|..+...++.+.+-.+++-+..+... -....+..++.+++.+.++..-. --+..+|.-|++.+..++...|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3588888887777654444444444322111 11235778899999999776663 356788999999889999999999
Q ss_pred HHHHHhhc
Q 048743 134 VFVHMVKT 141 (653)
Q Consensus 134 li~~~~~~ 141 (653)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 99988765
No 280
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.01 E-value=44 Score=35.15 Aligned_cols=81 Identities=15% Similarity=0.089 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (653)
..-|..|-++..+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |....
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~ 729 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFL 729 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHH
Confidence 33466666677777777777766665332 566666666666666555555555555532 22333
Q ss_pred HHHHcCChHHHHHHHHH
Q 048743 424 AYYKVKMFREAEALLKQ 440 (653)
Q Consensus 424 ~~~~~~~~~~a~~~~~~ 440 (653)
+|...|+++++.+++..
T Consensus 730 ~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 55666777766666543
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.69 E-value=36 Score=29.25 Aligned_cols=92 Identities=14% Similarity=-0.052 Sum_probs=55.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 048743 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVK 429 (653)
Q Consensus 350 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 429 (653)
++..-.+.++.+++..++..++--. |.....-..-...+.+.|++.+|..+|+++.+.. |....-..|+..|....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc
Confidence 3444457889999999999998876 4333333333445678899999999999987653 33333344444444433
Q ss_pred ChHHHHHHHHHHHHcC
Q 048743 430 MFREAEALLKQMRKSC 445 (653)
Q Consensus 430 ~~~~a~~~~~~m~~~~ 445 (653)
+-..-...-++..+.+
T Consensus 92 ~D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 92 GDPSWRRYADEVLESG 107 (160)
T ss_pred CChHHHHHHHHHHhcC
Confidence 3222233334444444
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.11 E-value=62 Score=32.28 Aligned_cols=69 Identities=9% Similarity=-0.027 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 048743 532 PTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601 (653)
Q Consensus 532 p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 601 (653)
....++..+...+.+.|.++.|...+..+.......+. ......-.-.+.+-..|+.++|+..+++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-LLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34557778888888888888888888776522100011 1233344445666778888888888877776
No 283
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=80.09 E-value=57 Score=31.17 Aligned_cols=176 Identities=13% Similarity=0.036 Sum_probs=93.2
Q ss_pred CCCCchhHHHHHHH-hhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCc
Q 048743 50 GIPERHVVNRFITD-LCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCS 128 (653)
Q Consensus 50 ~~~~~~~~~~ll~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 128 (653)
|.|++..++.|++- +.+.|-. +.=|.++|.....+ ...+.+++++-+.+.-+.-.++| .|+.
T Consensus 161 Gt~~~tvl~~L~~d~LVkeGi~--l~F~~~lFk~~~~E-------k~i~~lis~Lrkg~md~rLmeff--------Ppnk 223 (412)
T KOG2297|consen 161 GTLPATVLQSLLNDNLVKEGIA--LSFAVKLFKEWLVE-------KDINDLISSLRKGKMDDRLMEFF--------PPNK 223 (412)
T ss_pred CCCCHHHHHHHHHhhHHHHhHH--HHHHHHHHHHHHhh-------ccHHHHHHHHHhcChHhHHHHhc--------CCcc
Confidence 55666666665543 4433322 44566777665433 34566777776666555555555 7777
Q ss_pred hhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHH-HHHHHHhcC
Q 048743 129 DLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQH-IMELMSQTG 207 (653)
Q Consensus 129 ~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~-l~~~m~~~g 207 (653)
.+-..+-..+-..|.. .+++..... ....+++-. =..|..-..+...+++... +=++|++.+
T Consensus 224 rs~E~Fak~Ft~agL~------elvey~~~q-~~~~a~kEl----------q~~L~~q~s~e~p~~evi~~VKee~k~~n 286 (412)
T KOG2297|consen 224 RSVEHFAKYFTDAGLK------ELVEYHRNQ-QSEGARKEL----------QKELQEQVSEEDPVKEVILYVKEEMKRNN 286 (412)
T ss_pred hhHHHHHHHHhHhhHH------HHHHHHHHH-HHHHHHHHH----------HHHHHHHhccCCCHHHHHHHHHHHHHhcC
Confidence 7777665555555422 233333221 122222111 1123333344444555544 445677666
Q ss_pred CCccHHH----HHHHHHHHHhcC-ChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHH
Q 048743 208 VVADAHS----IIILAQIHEMNC-QRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGEL 272 (653)
Q Consensus 208 ~~p~~~t----~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 272 (653)
.|+... |..++++-.=.. .---|.+.++++.+ |..|+.++|..|+.+-++-+
T Consensus 287 -lPe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK~------------yaPLL~af~s~g~sEL~Ll~ 343 (412)
T KOG2297|consen 287 -LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLKQ------------YAPLLAAFCSQGQSELELLL 343 (412)
T ss_pred -CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHHh------------hhHHHHHHhcCChHHHHHHH
Confidence 456554 566665533221 11224455555443 89999999999998876543
No 284
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.01 E-value=50 Score=30.52 Aligned_cols=215 Identities=13% Similarity=0.050 Sum_probs=127.5
Q ss_pred CCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 048743 340 LLHSN----RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDS 415 (653)
Q Consensus 340 ~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 415 (653)
..||. ..|...-.+|....++++|...+.+..+-. ..+...|. ....++.|--+.++|.+.. --+
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~y--Ennrslfh-------AAKayEqaamLake~~kls--Evv 91 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGY--ENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVV 91 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH--HhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHH
Confidence 45554 467777778888999999998877765432 22222111 2234566666666666531 123
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHH---
Q 048743 416 TTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE--- 492 (653)
Q Consensus 416 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~--- 492 (653)
..|+-....|..+|.++-|-..+++.-+. + ...+++.|.+++++-..
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak~-l-----------------------------env~Pd~AlqlYqralavve 141 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAKA-L-----------------------------ENVKPDDALQLYQRALAVVE 141 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHH-h-----------------------------hcCCHHHHHHHHHHHHHHHh
Confidence 45677788899999999888877766542 0 02344555555543221
Q ss_pred ccC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc----CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 048743 493 EAA--LSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM----KIRPTV-ETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565 (653)
Q Consensus 493 ~~~--~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 565 (653)
.+- .--...|...-..+.+..++++|-..|.+-... .-.|+. ..|...|-.+....++..|...++.-.+- .
T Consensus 142 ~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi-p 220 (308)
T KOG1585|consen 142 EDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI-P 220 (308)
T ss_pred ccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC-c
Confidence 110 012234566667777888888776666554321 122332 34667777888888999999888653210 1
Q ss_pred hCCCccCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 048743 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIG 597 (653)
Q Consensus 566 ~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~ 597 (653)
...-.-+..+...||.+|- .|+.+++.+++.
T Consensus 221 ~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 221 AFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred cccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 1122336667788887764 677777666654
No 285
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.63 E-value=12 Score=28.98 Aligned_cols=41 Identities=10% Similarity=0.086 Sum_probs=24.7
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048743 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEH 374 (653)
Q Consensus 334 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 374 (653)
.+-...+.|++.+..+.+.+|.+.+++..|.++|+.++.+-
T Consensus 35 ~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~ 75 (108)
T PF02284_consen 35 NLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC 75 (108)
T ss_dssp HHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 34455566777777777777777777777777777766655
No 286
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.54 E-value=59 Score=31.05 Aligned_cols=57 Identities=21% Similarity=0.128 Sum_probs=44.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048743 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409 (653)
Q Consensus 351 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 409 (653)
.......|++.+|..+|+...... +.+...--.+...|...|+.+.|..++..+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 334567889999999999888877 555566778888899999999999999887543
No 287
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.43 E-value=37 Score=28.66 Aligned_cols=98 Identities=8% Similarity=0.085 Sum_probs=73.6
Q ss_pred hcCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCCCcccHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 048743 336 RNGKLLHSNRA--MAKLINGYKKHGKNSELSWLLLSIKKEHH----SFGESTLCSDVIDALIQLGF-LEAAHDILDDMEL 408 (653)
Q Consensus 336 ~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~ 408 (653)
.+.+..++..+ .|.++.-....+++.-...+++.+..-.. -..+...|.+++.+.++..- --.+..+|..|.+
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 44566666653 48888888888999999888888754221 02334459999999977766 5567899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHH
Q 048743 409 AGHPMDSTTYKSLLTAYYKVKMFRE 433 (653)
Q Consensus 409 ~g~~p~~~~~~~li~~~~~~~~~~~ 433 (653)
.+.++++.-|..+|.++.+....+.
T Consensus 109 ~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 8899999999999999877644443
No 288
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=78.60 E-value=2.1 Score=25.61 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=13.0
Q ss_pred CCCcccHHHHHHHHHHcCCHHHHH
Q 048743 377 FGESTLCSDVIDALIQLGFLEAAH 400 (653)
Q Consensus 377 ~~~~~~~~~li~~~~~~g~~~~a~ 400 (653)
|.+...|+.+-..|...|++++|.
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 455555555555555555555543
No 289
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=78.57 E-value=45 Score=31.52 Aligned_cols=84 Identities=12% Similarity=0.127 Sum_probs=59.2
Q ss_pred CCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----hCCCCCCHHhHHHHH---HHhhhhhHHhhhhhHHHHHHHHHhh
Q 048743 568 VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK----KQNMYVDKLMYKSEF---LKHHKHLYRRLKVSNARTEAQSKRL 640 (653)
Q Consensus 568 ~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~t~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (653)
|-..-...+..+..-|++-++.+.+.+...+.. ..|.+.|.....+-+ ..-.+-+++..++++.++|. .|.|
T Consensus 110 gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk-GgDW 188 (412)
T COG5187 110 GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK-GGDW 188 (412)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCCH
Confidence 344445667778888999999999888776554 458888876665544 33334577888888888886 7788
Q ss_pred HhHHHhHHhhcC
Q 048743 641 VNVQAFRKWAGI 652 (653)
Q Consensus 641 ~~~~~~~~~~~~ 652 (653)
+.-.+..-+.||
T Consensus 189 eRrNRyK~Y~Gi 200 (412)
T COG5187 189 ERRNRYKVYKGI 200 (412)
T ss_pred HhhhhHHHHHHH
Confidence 777766666554
No 290
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.55 E-value=12 Score=28.72 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=23.9
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048743 336 RNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKE 373 (653)
Q Consensus 336 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 373 (653)
....+.|++.+..+.+.+|.+.+++..|.++|+.++.+
T Consensus 34 ~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 34 FGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666665543
No 291
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=78.53 E-value=58 Score=30.40 Aligned_cols=64 Identities=9% Similarity=-0.005 Sum_probs=33.7
Q ss_pred hhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCch-hHHHHHHHHHHHHhcCCCchHHHHHHHHHcC
Q 048743 55 HVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLL-QLDLLAKLSLSLARAQMPVPASMILRLMLGR 122 (653)
Q Consensus 55 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 122 (653)
..|+.-+..+ +.|+ +++|.+.|+.+..+.|..| ...+.-.++.++-+.++++.|+..+++..+.
T Consensus 36 ~LY~~g~~~L-~~gn---~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 36 ELYNEGLTEL-QKGN---YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHHHH-hcCC---HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3455555444 2233 5566666666554444332 4444555555566666666666666665554
No 292
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=78.50 E-value=71 Score=31.39 Aligned_cols=228 Identities=10% Similarity=-0.016 Sum_probs=128.5
Q ss_pred hcCChHHHHHHHHHHHhcC-CCCCCcccHHHHHHHHHHcCCHHHHHHHHH-------HHHHCCCCCCHHHHHHHHHHHHH
Q 048743 356 KHGKNSELSWLLLSIKKEH-HSFGESTLCSDVIDALIQLGFLEAAHDILD-------DMELAGHPMDSTTYKSLLTAYYK 427 (653)
Q Consensus 356 ~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~-------~m~~~g~~p~~~~~~~li~~~~~ 427 (653)
...+.++|+..+.+...+- .......+|..+..+.++.|.+.+++..-- +..+.- .--..|-.+-.++-+
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~--~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSD--FLLEAYLNLARSNEK 95 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 3556666666665543321 122333457888888888888887654322 222210 012345555556655
Q ss_pred cCChHHHHHHHHHHHH-cCCccCc---hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHc---cCCC--C
Q 048743 428 VKMFREAEALLKQMRK-SCLVQNL---SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE---AALS--T 498 (653)
Q Consensus 428 ~~~~~~a~~~~~~m~~-~~~~p~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~---~~~p--~ 498 (653)
.-++.+++.+-..-.. .|..|.. ....++. .++...+.++++.+.|+...+. .-.| .
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~--------------~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMG--------------NAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHH--------------HHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 5556666655444332 2222311 1111111 1122355677777777654421 1112 4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHh--cCCCC-C-HHHHH-----HHHHHHhccCCHHHHHHHHHHHHHHhhhCCC
Q 048743 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQE--MKIRP-T-VETFY-----YLVYGHSSLEMYRDITILWGDIKRNIESGVL 569 (653)
Q Consensus 499 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p-~-~~t~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 569 (653)
..+|-+|-..|.+.+++++|+-+..+..+ ..+.. | ..-|. .+--++...|.+..|.+..++..+..-..|-
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 56788899999999999999887766654 22221 2 12233 3344778889999999999887654333332
Q ss_pred -ccCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 048743 570 -AVSRDLYETLLLNFLQGGYFERVMEVIGYM 599 (653)
Q Consensus 570 -~p~~~~y~~li~~~~~~g~~~~a~~~~~~m 599 (653)
..-....-.+.+.|...|+.+.|..-+++.
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 223344556778888999998887766543
No 293
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.87 E-value=5.4 Score=24.77 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 048743 500 YKLNSSIYFFCKGKMIGDALKIYRRMQ 526 (653)
Q Consensus 500 ~~y~~li~~~~~~g~~~~a~~~~~~m~ 526 (653)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555566666666666666665554
No 294
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.26 E-value=0.38 Score=40.93 Aligned_cols=81 Identities=6% Similarity=0.013 Sum_probs=56.8
Q ss_pred ccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHH
Q 048743 472 DTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYR 551 (653)
Q Consensus 472 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 551 (653)
+.|.+.+.+.....+++.+...+..-+....+.++..|++.+..++.+++++.. .+ .-...+++.|.+.|.++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~--~~-----yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS--NN-----YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS--SS-----S-CTHHHHHHHTTTSHH
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc--cc-----cCHHHHHHHHHhcchHH
Confidence 345557788888888888887665557888899999999998888888888721 11 22335667777777777
Q ss_pred HHHHHHHH
Q 048743 552 DITILWGD 559 (653)
Q Consensus 552 ~a~~~~~~ 559 (653)
++..++..
T Consensus 88 ~a~~Ly~~ 95 (143)
T PF00637_consen 88 EAVYLYSK 95 (143)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 77766644
No 295
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=77.04 E-value=30 Score=27.58 Aligned_cols=27 Identities=11% Similarity=0.309 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 048743 501 KLNSSIYFFCKGKMIGDALKIYRRMQE 527 (653)
Q Consensus 501 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 527 (653)
-|..|+.-|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 489999999999999999999999887
No 296
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.83 E-value=52 Score=34.63 Aligned_cols=51 Identities=22% Similarity=0.150 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHH
Q 048743 347 MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404 (653)
Q Consensus 347 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 404 (653)
|..|+-.+...|+-+....+-...++.| . .|.-.-+|...|+++++.+++.
T Consensus 695 ~~~LlLl~t~~g~~~~l~~la~~~~~~g--~-----~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 695 LGSLLLLYTSSGNAEGLAVLASLAKKQG--K-----NNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred hhhhhhhhhhcCChhHHHHHHHHHHhhc--c-----cchHHHHHHHcCCHHHHHHHHH
Confidence 3345555555555544444444444444 1 2333334445555555555543
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.69 E-value=45 Score=28.20 Aligned_cols=65 Identities=20% Similarity=0.174 Sum_probs=42.5
Q ss_pred HHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCc
Q 048743 57 VNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRE 123 (653)
Q Consensus 57 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 123 (653)
.+.||..+...-......++..++..+.--.|..+...++...+ +..+|++.+|.++|++..+.+
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 34444443332222336777777777765566666666666554 678899999999999998764
No 298
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=76.15 E-value=74 Score=30.37 Aligned_cols=97 Identities=6% Similarity=0.050 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHc-CC-CHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHH
Q 048743 498 TIYKLNSSIYFFCK-GK-MIGDALKIYRRMQE-MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD 574 (653)
Q Consensus 498 ~~~~y~~li~~~~~-~g-~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~ 574 (653)
|..+...+++.... .+ +...-.++..-+.. .|-.++..+...++..++..++++.-.++|+... ...+..-|.+
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~---~~~~~~~D~r 239 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCI---PNSVPGNDPR 239 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhc---ccCCCCCCCc
Confidence 44445555555443 11 22222333333333 4567888888899999999999999999997654 2223455778
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Q 048743 575 LYETLLLNFLQGGYFERVMEVIG 597 (653)
Q Consensus 575 ~y~~li~~~~~~g~~~~a~~~~~ 597 (653)
.|..+|+.....|+..-...+++
T Consensus 240 pW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 240 PWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred hHHHHHHHHHHcCCHHHHHHHhh
Confidence 89999999999999876655554
No 299
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.88 E-value=1.7 Score=36.88 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=58.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhc
Q 048743 183 VLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFK 262 (653)
Q Consensus 183 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 262 (653)
+|+.+.+.+.+.....+++.+...+-.-+....+.++..|++.++.+...++++...... ...++..+.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd----------~~~~~~~c~~ 82 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYD----------LDKALRLCEK 82 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-----------CTHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccC----------HHHHHHHHHh
Confidence 466777788888888888888876655566667888888888877777777766322211 3466677777
Q ss_pred cCCHHHHHHHHHHh
Q 048743 263 FDDIDAAGELILDM 276 (653)
Q Consensus 263 ~g~~~~A~~~~~~m 276 (653)
.|.+++|.-++.++
T Consensus 83 ~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 83 HGLYEEAVYLYSKL 96 (143)
T ss_dssp TTSHHHHHHHHHCC
T ss_pred cchHHHHHHHHHHc
Confidence 78888888777776
No 300
>PRK11906 transcriptional regulator; Provisional
Probab=75.86 E-value=57 Score=33.41 Aligned_cols=114 Identities=11% Similarity=0.011 Sum_probs=80.0
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHH
Q 048743 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMD-STTYKSLLTAYYKVKMFREAE 435 (653)
Q Consensus 357 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~ 435 (653)
..+..+|.++-+...+.+ +.|......+-.++.-.++++.|..+|++....+ || ..+|...-..+.-+|+.++|.
T Consensus 317 ~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 317 ELAAQKALELLDYVSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred hHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHH
Confidence 344667888888888887 7888877777777788899999999999987753 44 345555555566789999999
Q ss_pred HHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHH
Q 048743 436 ALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQ 488 (653)
Q Consensus 436 ~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 488 (653)
+.+++..+ +.|-.....++..|+..+|. ..++.|..++-
T Consensus 393 ~~i~~alr--LsP~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 431 (458)
T PRK11906 393 ICIDKSLQ--LEPRRRKAVVIKECVDMYVP------------NPLKNNIKLYY 431 (458)
T ss_pred HHHHHHhc--cCchhhHHHHHHHHHHHHcC------------CchhhhHHHHh
Confidence 99998665 56765445555555544432 44566666653
No 301
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.50 E-value=1.1e+02 Score=31.83 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048743 341 LHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS 420 (653)
Q Consensus 341 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 420 (653)
..|....-+++..++.+..+.-++.+-.+|..-| .. ...|-.++..|... ..+.-..+|+++.+.-+. |++.-.-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~-kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ES-KMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--ch-HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 3455556677777777777777777777777665 22 23377777777777 556667777777665432 3333333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 048743 421 LLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 421 li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
|..-|-+ ++-..+..+|......
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHH
Confidence 4444444 6677777777766654
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.31 E-value=7.9 Score=23.98 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 415 STTYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 415 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
..+++.|...|...|++++|+.++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35778888888999999999988888765
No 303
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=75.08 E-value=1e+02 Score=31.39 Aligned_cols=130 Identities=12% Similarity=0.110 Sum_probs=98.0
Q ss_pred cCCHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHHhccCCHHHHH
Q 048743 477 MDKSDLAESLIQEMREEA-ALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETF-YYLVYGHSSLEMYRDIT 554 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~-~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~li~~~~~~~~~~~a~ 554 (653)
...++.|..+|-+..+.+ ..+++++|+++|..++ .|+..-|..+|+--... -||...| .-.+.-+...++-..|.
T Consensus 410 ~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~nar 486 (660)
T COG5107 410 KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENAR 486 (660)
T ss_pred HhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHH
Confidence 567899999999999988 5679999999999888 67788999999875553 4565554 35666677889999999
Q ss_pred HHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 048743 555 ILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSE 614 (653)
Q Consensus 555 ~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 614 (653)
.+|+....++..... ...|..+|.--..-|+...|..+-+.|.+. .|-..+-...
T Consensus 487 aLFetsv~r~~~~q~---k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF 541 (660)
T COG5107 487 ALFETSVERLEKTQL---KRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVF 541 (660)
T ss_pred HHHHHhHHHHHHhhh---hHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHH
Confidence 999876644333322 458999999888999998888888877633 4444443333
No 304
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=74.53 E-value=1.4e+02 Score=32.72 Aligned_cols=49 Identities=8% Similarity=0.012 Sum_probs=34.8
Q ss_pred chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 048743 176 DTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMN 225 (653)
Q Consensus 176 ~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 225 (653)
|...--.+|=-|.|+|++++|.++..+..+. .......|...+..+...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4444557788899999999999999665543 455566777888888764
No 305
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.41 E-value=56 Score=27.68 Aligned_cols=55 Identities=15% Similarity=0.104 Sum_probs=41.3
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048743 354 YKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG 410 (653)
Q Consensus 354 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 410 (653)
-...++.+++..++..|.--....+...++. .-.+...|++++|.++|+++.+.+
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 3458999999999999988763333333333 444678999999999999998875
No 306
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=73.05 E-value=1.1e+02 Score=31.11 Aligned_cols=250 Identities=14% Similarity=0.078 Sum_probs=120.2
Q ss_pred HHHHHH-HHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhc----cCCchhHH
Q 048743 20 EVLLRK-LESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKG----KADLLQLD 94 (653)
Q Consensus 20 ~~~~~~-i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~ 94 (653)
+++... |.+|. .++.+.....+....+. .| ...|-.+..++....+ +...+|++.+..-..+ .+...|..
T Consensus 46 Evl~grilnAff-l~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~-k~~~kal~~ls~w~~~~~~~~~~~Ld~n 120 (549)
T PF07079_consen 46 EVLGGRILNAFF-LNNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ-KEYRKALQALSVWKEQIKGTESPWLDTN 120 (549)
T ss_pred HHHhhHHHHHHH-HhhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhhcccccchhhhh
Confidence 344333 44443 34555555555555553 23 3344444444332222 2267788777544222 11112222
Q ss_pred ---------HHHHHHHHHHhcCCCchHHHHHHHHHcCcc----CCCchhHHHHHHHHhhccccc---ccchHHHHHHHHH
Q 048743 95 ---------LLAKLSLSLARAQMPVPASMILRLMLGREN----LPCSDLLLLVFVHMVKTEIGT---CLASNFLIQLCDV 158 (653)
Q Consensus 95 ---------t~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~~~~~---~~~~~~l~~~~~~ 158 (653)
-=+..+..+...|.+.++..++++|...=+ .-++.+|+.++-.+.++-.-. ....+...+.|..
T Consensus 121 i~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYem 200 (549)
T PF07079_consen 121 IQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEM 200 (549)
T ss_pred HHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHH
Confidence 235567788899999999999999876543 478888988554333331100 0000111111111
Q ss_pred h----hhhhhhhcCCccCCCCchhhHHHHHHHHHh--cCChhhHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcCChhhh
Q 048743 159 F----LHLSAEKSNGAELIKPDTMIFNLVLHACVR--FGSSLKGQHIMELMSQTGVVADAHS-IIILAQIHEMNCQRDEL 231 (653)
Q Consensus 159 ~----~~~~~a~~~~~~~~~~~~~~yn~li~~~~~--~g~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a 231 (653)
. .++....+.=-..+-|-..-+..++....- ..+..--.++++.-...-+.|+... ...+...+.. +.+++
T Consensus 201 ilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~ 278 (549)
T PF07079_consen 201 ILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQV 278 (549)
T ss_pred HHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHH
Confidence 0 011111110001223433334444443322 1222333344444444446676544 2344444443 45555
Q ss_pred HHHHHHhhhcCC-CcccchhHHHHHHHHhhhccCCHHHHHHHHHHh
Q 048743 232 KKFKCYIDQLST-PFAHHYQQFYESLLSLHFKFDDIDAAGELILDM 276 (653)
Q Consensus 232 ~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 276 (653)
..+.+.+..... +.-..-..++..++....+.+....|.+.+.-+
T Consensus 279 ~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 279 GHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 555444443321 111111235788888888899999998887766
No 307
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=72.79 E-value=4.6 Score=24.13 Aligned_cols=30 Identities=10% Similarity=-0.085 Sum_probs=22.9
Q ss_pred HHHhccCCchhHHHHHHHHHHHHhcCCCchHH
Q 048743 82 KIQKGKADLLQLDLLAKLSLSLARAQMPVPAS 113 (653)
Q Consensus 82 ~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~ 113 (653)
+..+.+|. +...|+.+...|...|++++|+
T Consensus 4 kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 33344444 7889999999999999998885
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=72.21 E-value=12 Score=22.02 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 417 TYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 417 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
+|..+-.+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666655
No 309
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.59 E-value=64 Score=33.20 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=44.6
Q ss_pred hhhhhhhhcCCccCCCCchhh--HHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH--HHHHHHHHHhcCChhhhHHH
Q 048743 159 FLHLSAEKSNGAELIKPDTMI--FNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS--IIILAQIHEMNCQRDELKKF 234 (653)
Q Consensus 159 ~~~~~~a~~~~~~~~~~~~~~--yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~ 234 (653)
.|+.+.++.+++.|..|+... ..+.+...++.|+.+ +.+.+.+.|..|+... ....+...+..|+.+.++.+
T Consensus 12 ~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~L 87 (413)
T PHA02875 12 FGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEEL 87 (413)
T ss_pred hCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHH
Confidence 356666666677776665533 334455556677765 3444555676665431 22345666677888877776
Q ss_pred HHH
Q 048743 235 KCY 237 (653)
Q Consensus 235 ~~~ 237 (653)
++.
T Consensus 88 l~~ 90 (413)
T PHA02875 88 LDL 90 (413)
T ss_pred HHc
Confidence 654
No 310
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.59 E-value=9.7 Score=22.00 Aligned_cols=28 Identities=25% Similarity=0.175 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHhhhh
Q 048743 21 VLLRKLESASKNHQVGEAWETFNDFQRL 48 (653)
Q Consensus 21 ~~~~~i~~~~~~~~~~~A~~~~~~~~~~ 48 (653)
++..+...+.+.|++++|.+.|+.+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455666777889999999999988774
No 311
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.35 E-value=38 Score=30.31 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=61.1
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcC
Q 048743 353 GYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL---AGHPMDSTTYKSLLTAYYKVK 429 (653)
Q Consensus 353 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~~ 429 (653)
...+.|+ +.|.+.|-+++..+ ...++..-..|...| ...+.+++..++....+ .+-.+|+..+.+|.+.+.+.|
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~-~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTP-ELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCC-CCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 3455566 68999999998888 445566444555544 47789999999988755 344688999999999999999
Q ss_pred ChHHHH
Q 048743 430 MFREAE 435 (653)
Q Consensus 430 ~~~~a~ 435 (653)
+++.|.
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 999874
No 312
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=71.22 E-value=14 Score=35.61 Aligned_cols=51 Identities=8% Similarity=0.011 Sum_probs=32.5
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048743 508 FFCKGKMIGDALKIYRRMQEMKIRP-TVETFYYLVYGHSSLEMYRDITILWGDI 560 (653)
Q Consensus 508 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~ 560 (653)
.|.+.|++++|++.|..-+. +.| |.+++..-..+|.+...+..|+.=....
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 35677777777777776554 345 6677766667777777666655544433
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.62 E-value=26 Score=31.32 Aligned_cols=80 Identities=11% Similarity=0.004 Sum_probs=59.4
Q ss_pred cCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHH
Q 048743 190 FGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAA 269 (653)
Q Consensus 190 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 269 (653)
...-+.|.+.|-.+...+..-+ ...-..+..|--..+.+++.+++-.......++-..+..++.+|.+.|-+.|+.+.|
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3344678888888888875544 444444444445788889998888887776666566777899999999999999988
Q ss_pred H
Q 048743 270 G 270 (653)
Q Consensus 270 ~ 270 (653)
.
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 314
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=70.47 E-value=28 Score=30.75 Aligned_cols=79 Identities=18% Similarity=0.134 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH-HHHHcCC--hHHH
Q 048743 360 NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA--GHPMDSTTYKSLLT-AYYKVKM--FREA 434 (653)
Q Consensus 360 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~-~~~~~~~--~~~a 434 (653)
-++++++-+++.. ++...-...+.|++++|..-++++.+. .++--...|..+.. +++.++. +-+|
T Consensus 19 REE~l~lsRei~r----------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA 88 (204)
T COG2178 19 REEALKLSREIVR----------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEA 88 (204)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHH
Confidence 3677777777765 445555567788899888888877442 11112234444444 5666654 5566
Q ss_pred HHHHHHHHHcCCccC
Q 048743 435 EALLKQMRKSCLVQN 449 (653)
Q Consensus 435 ~~~~~~m~~~~~~p~ 449 (653)
..++.-+... ..|+
T Consensus 89 ~~l~~~l~~~-~~ps 102 (204)
T COG2178 89 TLLYSILKDG-RLPS 102 (204)
T ss_pred HHHHHHHhcC-CCCC
Confidence 6666655544 3444
No 315
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.22 E-value=16 Score=24.03 Aligned_cols=34 Identities=6% Similarity=0.151 Sum_probs=28.4
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048743 582 NFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEF 615 (653)
Q Consensus 582 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 615 (653)
...+.|-..++..++++|.+.|+..+...|..++
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4557788889999999999999998888888776
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.17 E-value=1.8e+02 Score=32.23 Aligned_cols=87 Identities=14% Similarity=0.080 Sum_probs=59.0
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-ccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHH
Q 048743 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVV-ADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFY 253 (653)
Q Consensus 175 ~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (653)
.+...-+.|+.+|.+.++.++-.++.+.-. .|.. -| .-..+..|.+.+-.+.|..+-.......
T Consensus 429 a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~he----------- 493 (933)
T KOG2114|consen 429 ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKKHE----------- 493 (933)
T ss_pred ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhccCH-----------
Confidence 355566788999999999988887776544 4432 13 3346777777787888777766554421
Q ss_pred HHHHHhhhccCCHHHHHHHHHHh
Q 048743 254 ESLLSLHFKFDDIDAAGELILDM 276 (653)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~m 276 (653)
..|--.+-..+++++|.+++..+
T Consensus 494 ~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 494 WVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhcCHHHHHHHHhcC
Confidence 23333344568999999999988
No 317
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.01 E-value=75 Score=27.73 Aligned_cols=133 Identities=9% Similarity=0.024 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHcc
Q 048743 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEA 494 (653)
Q Consensus 415 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~ 494 (653)
...|...++ +.+.+..++|+.-|..+.+.|...=+....+-...+ ....|+...|...|+++....
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~-------------~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATL-------------LAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHH-------------HhhcccHHHHHHHHHHHhccC
Confidence 344444443 355566777777777777665433221111111111 112566667777777766555
Q ss_pred CCCCHH-HHHHHH--HHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 495 ALSTIY-KLNSSI--YFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 495 ~~p~~~-~y~~li--~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
-.|-+. -..-|= ..+...|.++++....+-+-..+-+.-...-..|--+-.+.|++..|...|..+.
T Consensus 125 ~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 125 SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred CCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 444222 111111 2235678888888877776655544444555567677778888888888887775
No 318
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=69.73 E-value=92 Score=28.67 Aligned_cols=100 Identities=8% Similarity=0.016 Sum_probs=61.9
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhh--------hCCCccCHHHHHHHH
Q 048743 509 FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE--------SGVLAVSRDLYETLL 580 (653)
Q Consensus 509 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~p~~~~y~~li 580 (653)
|.+..+..--.++.+-....++.-+..-..+++ +...|+..+|+.-++.-..... .---.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 455544433334444444466666655555544 4567888888777665432100 001136666677777
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHhH
Q 048743 581 LNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611 (653)
Q Consensus 581 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 611 (653)
..|. .+++++|.+.+.++.+.|+.|....-
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~Dii~ 276 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPEDIIT 276 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHHHHHH
Confidence 6554 67899999999999999999876543
No 319
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=68.94 E-value=14 Score=21.70 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 048743 500 YKLNSSIYFFCKGKMIGDALKIYRRMQE 527 (653)
Q Consensus 500 ~~y~~li~~~~~~g~~~~a~~~~~~m~~ 527 (653)
.+|..+...|...|++++|++.|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777777665
No 320
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=68.72 E-value=1.2e+02 Score=29.49 Aligned_cols=117 Identities=13% Similarity=0.111 Sum_probs=69.5
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----hCCC
Q 048743 529 KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK----KQNM 604 (653)
Q Consensus 529 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~----~~g~ 604 (653)
.+..|..-++.|..+- ..++++-.+..+... +..|-.--...+-....-||+-|+.+.|++.+.+-. ..|.
T Consensus 65 ~i~~D~~~l~~m~~~n--eeki~eld~~iedae---enlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~ 139 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKAN--EEKIKELDEKIEDAE---ENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGH 139 (393)
T ss_pred ceeccHHHHHHHHHhh--HHHHHHHHHHHHHHH---HhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 4556666666655431 112223222222222 222322333455556677999999999998877654 4588
Q ss_pred CCCHHhHHHHH---HHhhhhhHHhhhhhHHHHHHHHHhhHhHHHhHHhhc
Q 048743 605 YVDKLMYKSEF---LKHHKHLYRRLKVSNARTEAQSKRLVNVQAFRKWAG 651 (653)
Q Consensus 605 ~p~~~t~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (653)
+.|..-+.+=+ ..-+.-+.+..+.++.++|. .|.|+.=.+.+-+-|
T Consensus 140 kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~-GgDWeRrNRlKvY~G 188 (393)
T KOG0687|consen 140 KIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE-GGDWERRNRLKVYQG 188 (393)
T ss_pred chhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCChhhhhhHHHHHH
Confidence 99988887755 33334466777777888886 777766555544433
No 321
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=68.08 E-value=1.6e+02 Score=30.66 Aligned_cols=66 Identities=9% Similarity=0.127 Sum_probs=48.7
Q ss_pred ccCCHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHH
Q 048743 476 LMDKSDLAESLIQEMREEAA-LSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV--ETFYYLVY 542 (653)
Q Consensus 476 ~~~~~~~a~~~~~~m~~~~~-~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~ 542 (653)
+.|+.++|.+.|.+|.+..- .-+..+...||.++...+.+.++..++.+--+.. -|.+ ..|+..+-
T Consensus 271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALL 339 (539)
T PF04184_consen 271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALL 339 (539)
T ss_pred HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHH
Confidence 48999999999999986441 1144577889999999999999999999864332 3443 45665443
No 322
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.07 E-value=1.9e+02 Score=31.22 Aligned_cols=151 Identities=13% Similarity=-0.032 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHhcCCCCCCcccHHHHHHH-HHHcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcC--
Q 048743 360 NSELSWLLLSIKKEHHSFGESTLCSDVIDA-LIQLGFLEAAHDILDDMEL-------AGHPMDSTTYKSLLTAYYKVK-- 429 (653)
Q Consensus 360 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~~-- 429 (653)
...|.++++.....|....-...-.....+ +....|++.|...|....+ .| +.....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 345566666655555222111111111222 3344566666666666655 44 2223334444444432
Q ss_pred ---ChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhccccccccc-ccCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 048743 430 ---MFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSS-LMDKSDLAESLIQEMREEAALSTIYKLNSS 505 (653)
Q Consensus 430 ---~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~y~~l 505 (653)
+.+.|..++....+.|.. +..+.+ ..| .. .+ +..+...|...|..-...|..+ ..-+-++
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a~~~l--g~~----~~--------~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~ 368 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DAQYLL--GVL----YE--------TGTKERDYRRAFEYYSLAAKAGHIL-AIYRLAL 368 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hHHHHH--HHH----HH--------cCCccccHHHHHHHHHHHHHcCChH-HHHHHHH
Confidence 445566666666655532 211111 000 00 01 1234566666666666666422 1112111
Q ss_pred HHHHH--cCCCHHHHHHHHHHHHhcC
Q 048743 506 IYFFC--KGKMIGDALKIYRRMQEMK 529 (653)
Q Consensus 506 i~~~~--~~g~~~~a~~~~~~m~~~g 529 (653)
+.... ...+.+.|..++++..+.|
T Consensus 369 ~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 369 CYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 11111 2335666666666666665
No 323
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.00 E-value=40 Score=30.55 Aligned_cols=45 Identities=11% Similarity=0.001 Sum_probs=19.1
Q ss_pred cCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHH
Q 048743 477 MDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYR 523 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~ 523 (653)
.+.+.++....++-.+.. | |...-..+++-||-.|++++|+.-++
T Consensus 14 ~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 14 DNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred hccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 334444444443333322 3 33333444444445555555444443
No 324
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=66.15 E-value=1.4e+02 Score=29.46 Aligned_cols=131 Identities=13% Similarity=-0.050 Sum_probs=80.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC----CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHH----
Q 048743 349 KLINGYKKHGKNSELSWLLLSIKKEHH----SFGESTLCSDVIDALIQLGFLEAAHDILDDMEL----AGHPMDST---- 416 (653)
Q Consensus 349 ~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~---- 416 (653)
++-.++...+.++++++.|+...+-.. ......+|-.|-..|.+..|.++|.-+..+..+ -++.--..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 466677777888888888887554321 233345689999999999999988766655422 23221122
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc-hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHH
Q 048743 417 -TYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL-SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQE 489 (653)
Q Consensus 417 -~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 489 (653)
..-.|.-++...|+.-.|.+.-++..+..+.... .....-..++. |.|-..|+.+.|..-++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a----------DIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA----------DIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH----------HHHHhcccHhHHHHHHHH
Confidence 2233455778889888888888877664333322 22222222233 345567888877766643
No 325
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=65.65 E-value=89 Score=26.94 Aligned_cols=94 Identities=13% Similarity=-0.030 Sum_probs=52.1
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCC
Q 048743 510 CKGKMIGDALKIYRRMQEMKIRPTVETFYY-LVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY 588 (653)
Q Consensus 510 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~ 588 (653)
.+.++.+++..++..|.-. .|....... -...+...|++.+|.++|+++.. -.|....-..|+-.|....+
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE------RAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc------cCCCChHHHHHHHHHHHHcC
Confidence 4577888888888888763 455443322 22335678888888888887751 22333333344433334333
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhH
Q 048743 589 FERVMEVIGYMKKQNMYVDKLMY 611 (653)
Q Consensus 589 ~~~a~~~~~~m~~~g~~p~~~t~ 611 (653)
-..-...-+++.+.+-.|+....
T Consensus 93 D~~Wr~~A~evle~~~d~~a~~L 115 (160)
T PF09613_consen 93 DPSWRRYADEVLESGADPDARAL 115 (160)
T ss_pred ChHHHHHHHHHHhcCCChHHHHH
Confidence 33344445556666555554433
No 326
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=64.63 E-value=24 Score=20.49 Aligned_cols=27 Identities=15% Similarity=-0.022 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048743 347 MAKLINGYKKHGKNSELSWLLLSIKKE 373 (653)
Q Consensus 347 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 373 (653)
|..+-..+...|++++|.+.|++..+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344555555666666666666555443
No 327
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=64.55 E-value=1.1e+02 Score=27.77 Aligned_cols=175 Identities=13% Similarity=0.033 Sum_probs=89.4
Q ss_pred cccccccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHh--hccCCcchhhhHHHHHHHHHhcc
Q 048743 10 EKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDL--CYSAEPHWLQKACDLVLKIQKGK 87 (653)
Q Consensus 10 ~~l~~~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~~~~a~~~~~~~~~~~ 87 (653)
+.|...+.-+.+++.+--.+...|+++.|.+.|+...+. .+..-|..+=+++ -.-|+ ..-|.+-+.+..+.+
T Consensus 90 QaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---Dp~y~Ya~lNRgi~~YY~gR---~~LAq~d~~~fYQ~D 163 (297)
T COG4785 90 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---DPTYNYAHLNRGIALYYGGR---YKLAQDDLLAFYQDD 163 (297)
T ss_pred hhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---CCcchHHHhccceeeeecCc---hHhhHHHHHHHHhcC
Confidence 345555556668888888888999999999999998872 3333444443332 23344 566777777776666
Q ss_pred CCchhHHHHHHHHHHHHhcCCCchHH-HHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhh
Q 048743 88 ADLLQLDLLAKLSLSLARAQMPVPAS-MILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEK 166 (653)
Q Consensus 88 ~~~~~~~t~~~li~~~~~~g~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 166 (653)
+..|-...|--++ -..-++.+|. .+.++... .|..-|...|..+.-...+.......+...... +-..
T Consensus 164 ~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~--n~~~-- 232 (297)
T COG4785 164 PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEETLMERLKADATD--NTSL-- 232 (297)
T ss_pred CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccc--hHHH--
Confidence 6655444333322 1223334443 33333322 233334333322211110000000000000000 0000
Q ss_pred cCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 048743 167 SNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTG 207 (653)
Q Consensus 167 ~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g 207 (653)
-+.=+.||--|-+-+...|+.++|..+|+-....+
T Consensus 233 ------Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 233 ------AEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred ------HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 01123567777788888888888888888766543
No 328
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.05 E-value=36 Score=27.16 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=23.8
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHhcc
Q 048743 253 YESLLSLHFKFDDIDAAGELILDMNR 278 (653)
Q Consensus 253 ~~~li~~~~~~g~~~~A~~~~~~m~~ 278 (653)
|..|+..|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 89999999999999999999999843
No 329
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=63.61 E-value=22 Score=20.63 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 417 TYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 417 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
.|..+-..+.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455556666666666666666554
No 330
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.55 E-value=45 Score=31.67 Aligned_cols=56 Identities=18% Similarity=0.069 Sum_probs=27.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 048743 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406 (653)
Q Consensus 349 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 406 (653)
..-..|..+|.+.+|.++-+....-+ |.+...|-.|+..+...||--.|.+-++++
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33444455555555555555554444 444444555555555555544444444443
No 331
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=62.91 E-value=1.2e+02 Score=27.31 Aligned_cols=226 Identities=16% Similarity=0.063 Sum_probs=135.1
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHH
Q 048743 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA-GHPMDSTTYKSLLTAYYKVKMFREAE 435 (653)
Q Consensus 357 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~ 435 (653)
.+....+...+...............+......+...+++..+...+...... ........+......+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34455555555555544411112344677777777788888887777776642 23345556666666777777778888
Q ss_pred HHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccC--CCCHHHHHHHHHHHHcCC
Q 048743 436 ALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAA--LSTIYKLNSSIYFFCKGK 513 (653)
Q Consensus 436 ~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~y~~li~~~~~~g 513 (653)
..+.........+.......... .+...|+.+.|...+.+...... ......+......+...+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALG--------------ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHH--------------HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc
Confidence 88777766433331111110000 13347788888888877744221 012333444444466778
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccC-HHHHHHHHHHHHhCCCHHHH
Q 048743 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVS-RDLYETLLLNFLQGGYFERV 592 (653)
Q Consensus 514 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~a 592 (653)
+.+.+...+.+............+..+-..+...++++.|...+..... ..|+ ...+..+...+...|..+++
T Consensus 182 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE------LDPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred CHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh------hCcccHHHHhhHHHHHHHcCCHHHH
Confidence 8888888888887642221356677777788888888888888877752 3333 33444444444467778888
Q ss_pred HHHHHHHHhC
Q 048743 593 MEVIGYMKKQ 602 (653)
Q Consensus 593 ~~~~~~m~~~ 602 (653)
...+.+....
T Consensus 256 ~~~~~~~~~~ 265 (291)
T COG0457 256 LEALEKALEL 265 (291)
T ss_pred HHHHHHHHHh
Confidence 8887777644
No 332
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.18 E-value=1.2e+02 Score=26.81 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh-----cCCCCCH-HHHHHHHHHHhccC----CHHHHHHHHHHHHHHhh-hCCC
Q 048743 501 KLNSSIYFFCKGKMIGDALKIYRRMQE-----MKIRPTV-ETFYYLVYGHSSLE----MYRDITILWGDIKRNIE-SGVL 569 (653)
Q Consensus 501 ~y~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~-~t~~~li~~~~~~~----~~~~a~~~~~~~~~~~~-~~~~ 569 (653)
-|...+.-++......++.+++++.+. ..+.|+- .++.++-.++...+ +..+|..+|+......+ ....
T Consensus 30 ~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 30 NWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 355555555555555566666655543 2467875 57777877776544 44556666665543322 2257
Q ss_pred ccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 048743 570 AVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603 (653)
Q Consensus 570 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 603 (653)
.|+..+|+.-+.... +|-++..++.+.+
T Consensus 110 ~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 110 DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp -TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 899999998887764 3556666665554
No 333
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.63 E-value=17 Score=23.32 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=21.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCC
Q 048743 579 LLLNFLQGGYFERVMEVIGYMKKQNM 604 (653)
Q Consensus 579 li~~~~~~g~~~~a~~~~~~m~~~g~ 604 (653)
+..+|...|+.+.|.+++++....|-
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 56788899999999999998886543
No 334
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=59.77 E-value=38 Score=22.19 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=23.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048743 390 LIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423 (653)
Q Consensus 390 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (653)
..+.|-++++..++++|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456667777777777777777777777766654
No 335
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.44 E-value=60 Score=26.49 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 517 DALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 517 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
+..+-++......+.|+......-+++|.+.+++..|.++|+.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445556666667778888888888888888888888888887665
No 336
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=59.20 E-value=1.1e+02 Score=30.03 Aligned_cols=37 Identities=11% Similarity=0.014 Sum_probs=23.3
Q ss_pred chhhHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCccH
Q 048743 176 DTMIFNLVLHACVRFGSSLKGQHIMELMSQTG-VVADA 212 (653)
Q Consensus 176 ~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~ 212 (653)
+..-...++.+++-..+.+...++++.....+ +.+..
T Consensus 200 ~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d 237 (324)
T PF11838_consen 200 SPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQD 237 (324)
T ss_dssp THHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTT
T ss_pred CHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHH
Confidence 45556677777777788877777777777754 44433
No 337
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=58.92 E-value=1.2e+02 Score=26.79 Aligned_cols=41 Identities=5% Similarity=-0.057 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhc
Q 048743 193 SLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQL 241 (653)
Q Consensus 193 ~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (653)
+++|.+.|+.... ..|+..+|..-+..+. +|-+++.++.+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 4455555555554 4899999998888774 355566655544
No 338
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=58.53 E-value=15 Score=20.25 Aligned_cols=23 Identities=13% Similarity=-0.035 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhccchhHHHHHHH
Q 048743 21 VLLRKLESASKNHQVGEAWETFN 43 (653)
Q Consensus 21 ~~~~~i~~~~~~~~~~~A~~~~~ 43 (653)
+...+-..+...|++++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34556677888899999988876
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=57.89 E-value=26 Score=22.53 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=8.9
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 048743 388 DALIQLGFLEAAHDILDDME 407 (653)
Q Consensus 388 ~~~~~~g~~~~a~~~~~~m~ 407 (653)
.+|...|+.+.|.++++++.
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444
No 340
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=57.76 E-value=33 Score=25.29 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=25.9
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCCHHHHHHH
Q 048743 511 KGKMIGDALKIYRRMQEMKIRPTV--ETFYYLVYGHSSLEMYRDITIL 556 (653)
Q Consensus 511 ~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~~ 556 (653)
...+.++|+..|....+.-..|.. .++..++++++..|++++++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666654322221 3556666666666666665544
No 341
>PHA02875 ankyrin repeat protein; Provisional
Probab=57.45 E-value=2.2e+02 Score=29.21 Aligned_cols=107 Identities=21% Similarity=0.093 Sum_probs=51.2
Q ss_pred hhhhhhhhcCCccCCCCchh--hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH---HHHHHHHHHhcCChhhhHH
Q 048743 159 FLHLSAEKSNGAELIKPDTM--IFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS---IIILAQIHEMNCQRDELKK 233 (653)
Q Consensus 159 ~~~~~~a~~~~~~~~~~~~~--~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~a~~ 233 (653)
.++.+.++.+.+.+..|+.. ...+.+...++.|+.+.+..+++ .|...+... -.+.+...+..|+.+-++.
T Consensus 45 ~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~ 120 (413)
T PHA02875 45 FRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKL 120 (413)
T ss_pred cCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHH
Confidence 34445555555555544432 12234556677888877666654 332221111 1234455556777765555
Q ss_pred HHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHH
Q 048743 234 FKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELIL 274 (653)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 274 (653)
+++.-.....++.. -.+.++..+..|+.+-+..+++
T Consensus 121 Ll~~gad~~~~~~~-----g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 121 LIARGADPDIPNTD-----KFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred HHhCCCCCCCCCCC-----CCCHHHHHHHcCCHHHHHHHHh
Confidence 55432211111111 1234445556777766555543
No 342
>PRK11619 lytic murein transglycosylase; Provisional
Probab=57.23 E-value=3e+02 Score=30.31 Aligned_cols=229 Identities=10% Similarity=-0.017 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHH--HHHHHHHHHCCCCCCHHHHHH
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA--HDILDDMELAGHPMDSTTYKS 420 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a--~~~~~~m~~~g~~p~~~~~~~ 420 (653)
+...-.....+....|+.++|....+.+=..| ......++.++..+.+.|.+... .+=++.....| +...-..
T Consensus 128 ~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g--~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~ 202 (644)
T PRK11619 128 PVEARCNYYYAKWATGQQQEAWQGAKELWLTG--KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTY 202 (644)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 33344567777888888887877777776666 33334578888888877754432 22222223332 1111122
Q ss_pred HHHHH-----------HH-cCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHH
Q 048743 421 LLTAY-----------YK-VKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQ 488 (653)
Q Consensus 421 li~~~-----------~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 488 (653)
+..-+ .. ..++..+..++.. +.|+....-+....+..+. ..+.+.|..++.
T Consensus 203 l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rla------------r~d~~~A~~~~~ 265 (644)
T PRK11619 203 LAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVA------------RQDAENARLMIP 265 (644)
T ss_pred HHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHH------------HhCHHHHHHHHH
Confidence 22111 00 0112222111111 1122211111111122222 356688999998
Q ss_pred HHHHcc-CCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 048743 489 EMREEA-ALS--TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565 (653)
Q Consensus 489 ~m~~~~-~~p--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 565 (653)
...... ..+ ...++..+....+..+..++|...+....... .|......-++.-...++++.+...+..|....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~- 342 (644)
T PRK11619 266 SLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA- 342 (644)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-
Confidence 875433 222 23345556555555543567777777544322 244445555566568899999888887774321
Q ss_pred hCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 566 ~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
.-...-.--+.+++...|+.++|...|++..
T Consensus 343 ----~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 343 ----KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred ----ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 1233444557777777999999999999874
No 343
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=55.24 E-value=1.1e+02 Score=25.42 Aligned_cols=77 Identities=12% Similarity=0.044 Sum_probs=55.4
Q ss_pred CCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHh-ccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCch
Q 048743 51 IPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQK-GKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSD 129 (653)
Q Consensus 51 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 129 (653)
.++..+--.+-.++.++.+...+++.+.+++++.+ .++. -..+-.-.|.-++.|.+++++++++.+.+.+. .||..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~-~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE-RRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc-cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCcH
Confidence 44555555666778888888889999999999976 2222 23333445566899999999999999998876 55554
Q ss_pred h
Q 048743 130 L 130 (653)
Q Consensus 130 ~ 130 (653)
-
T Consensus 106 Q 106 (149)
T KOG3364|consen 106 Q 106 (149)
T ss_pred H
Confidence 3
No 344
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=54.34 E-value=1.6e+02 Score=26.23 Aligned_cols=60 Identities=15% Similarity=0.011 Sum_probs=38.9
Q ss_pred HHHHHHHhcCChhhhHHHHHHhhhcC-----------CCcccchhHHHHHHHHhhhccCCHHHHHHHHHHh
Q 048743 217 ILAQIHEMNCQRDELKKFKCYIDQLS-----------TPFAHHYQQFYESLLSLHFKFDDIDAAGELILDM 276 (653)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 276 (653)
+++-.|.+.-++.++.++++.+.+.. .....+--.+-|.....|.+.|.+|.|..++++-
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 34444555555666666655554431 1222333356788899999999999999999865
No 345
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=52.12 E-value=40 Score=19.52 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 048743 501 KLNSSIYFFCKGKMIGDALKIYRRMQE 527 (653)
Q Consensus 501 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 527 (653)
+|..+-..|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555566666666666666666544
No 346
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=51.56 E-value=1.2e+02 Score=23.81 Aligned_cols=47 Identities=6% Similarity=-0.103 Sum_probs=21.5
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 048743 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK 529 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 529 (653)
.|++++|..+.+.+ ..||...|-+|-. .+.|..+++..-+.+|-..|
T Consensus 52 rG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 52 RGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred cchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34444444444333 1255555544433 34555555555555554443
No 347
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=51.51 E-value=1.5e+02 Score=28.21 Aligned_cols=89 Identities=13% Similarity=0.077 Sum_probs=60.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--
Q 048743 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY-- 426 (653)
Q Consensus 349 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-- 426 (653)
.=|.+++..++|.+++...-+--+.....|. .+...-|-.|.|.+.+..+.++-..-...--.-+...|.+++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPp-kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPP-KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 4488999999999988765443332212222 2366778889999999999988877655322223344777666554
Q ss_pred ---HcCChHHHHHHH
Q 048743 427 ---KVKMFREAEALL 438 (653)
Q Consensus 427 ---~~~~~~~a~~~~ 438 (653)
-.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 459999998876
No 348
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=51.23 E-value=31 Score=25.48 Aligned_cols=48 Identities=10% Similarity=-0.072 Sum_probs=37.7
Q ss_pred ccCCHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHcCCCHHHHHHHHH
Q 048743 476 LMDKSDLAESLIQEMREEAALS--TIYKLNSSIYFFCKGKMIGDALKIYR 523 (653)
Q Consensus 476 ~~~~~~~a~~~~~~m~~~~~~p--~~~~y~~li~~~~~~g~~~~a~~~~~ 523 (653)
..+..++|...|....+.-..| --.++..|+.+|+.-|++.+++++-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999998888765545 33467889999999999999888643
No 349
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.82 E-value=79 Score=28.36 Aligned_cols=52 Identities=10% Similarity=-0.076 Sum_probs=35.2
Q ss_pred ccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 546 SLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 546 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
...+.+......+.+.+ .....|+..+|..++..+...|+.++|.+...++.
T Consensus 120 ~~~~~~~l~~~~~~a~~---~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAER---LLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCCHHHHHHHHHHHHH---HHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44454444444444432 23567888888888888888888888888888776
No 350
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.52 E-value=29 Score=33.17 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=35.9
Q ss_pred CCchhh-HHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHH
Q 048743 174 KPDTMI-FNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIII 217 (653)
Q Consensus 174 ~~~~~~-yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ 217 (653)
.|++.+ ||.-|+...+.||+++|+.+++|.++.|+.--..||..
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 455554 78999999999999999999999999998755555543
No 351
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.44 E-value=30 Score=33.08 Aligned_cols=45 Identities=20% Similarity=0.167 Sum_probs=36.1
Q ss_pred CCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 048743 497 STIY-KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLV 541 (653)
Q Consensus 497 p~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 541 (653)
|+.. -||..|....+.|++++|+.+++|..+.|+.--..||..-+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 4444 47899999999999999999999999999876666665443
No 352
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.88 E-value=16 Score=29.99 Aligned_cols=32 Identities=9% Similarity=0.014 Sum_probs=24.4
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 048743 476 LMDKSDLAESLIQEMREEAALSTIYKLNSSIYFF 509 (653)
Q Consensus 476 ~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~ 509 (653)
+.|.-..|..+|.+|.+.|..|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 45667788899999999998776 477777653
No 353
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.88 E-value=53 Score=29.50 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=41.8
Q ss_pred ccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcC
Q 048743 66 YSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGR 122 (653)
Q Consensus 66 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 122 (653)
...+....+...+..++..+ ..|+..+|..++.++...|+.++|.++++++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~---~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLR---RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555445555566555543 4479999999999999999999999999998764
No 354
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=49.51 E-value=1e+02 Score=33.05 Aligned_cols=76 Identities=25% Similarity=0.186 Sum_probs=53.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC-CCCCcccHHHHHHHHHHcCCHHH------HHHHHHHHHHCCCCCCHHHHHHH
Q 048743 349 KLINGYKKHGKNSELSWLLLSIKKEHH-SFGESTLCSDVIDALIQLGFLEA------AHDILDDMELAGHPMDSTTYKSL 421 (653)
Q Consensus 349 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~------a~~~~~~m~~~g~~p~~~~~~~l 421 (653)
+|+.+|..+|++-.+.++++....... ...-...||..|+...+.|.++- |.+.++. ..+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ---ARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---hhcCCcchHHHHH
Confidence 899999999999999999998875441 11112238889999999998652 3333333 3355688888888
Q ss_pred HHHHHH
Q 048743 422 LTAYYK 427 (653)
Q Consensus 422 i~~~~~ 427 (653)
+.+-.+
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 776544
No 355
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=49.30 E-value=2.8e+02 Score=27.53 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=25.1
Q ss_pred HHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHH
Q 048743 26 LESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKI 83 (653)
Q Consensus 26 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 83 (653)
.+++-+.|+|+...+....... ..++...|..+... +.++ .+++...+.+.
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~--~~~~~~~~~al~~l--~~~~---~~~~~~~i~~~ 55 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNE--DSPEYSFYRALLAL--RQGD---YDEAKKYIEKA 55 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccC--CChhHHHHHHHHHH--hCcc---HHHHHHHHHHH
Confidence 4566677888885555544332 11233344444433 4444 34555555443
No 356
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=48.36 E-value=3e+02 Score=27.67 Aligned_cols=294 Identities=9% Similarity=-0.022 Sum_probs=160.7
Q ss_pred hHHHHHHHHHh--cCChhhHHHHHHHHHhcCCCccHHHHHHHHHH--HHhcCChhhhHHHHHHhhhcCCCcccchhHHHH
Q 048743 179 IFNLVLHACVR--FGSSLKGQHIMELMSQTGVVADAHSIIILAQI--HEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYE 254 (653)
Q Consensus 179 ~yn~li~~~~~--~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (653)
-|.+|-.++.. .||-..|.++-.+-.+. +.-|..-..-++.+ -.-.|+.+.+.+-|+-|...+..-.- =..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRll----GLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLL----GLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHH----hHH
Confidence 34455555443 45666665554443321 22233333333332 33457777777777777653211100 022
Q ss_pred HHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHH
Q 048743 255 SLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVL 334 (653)
Q Consensus 255 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (653)
.|.-.--+.|+-+.|.++-++-..+--..||
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~W------------------------------------------------- 189 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLPW------------------------------------------------- 189 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCch-------------------------------------------------
Confidence 2222234567777777777666332222232
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCccc--HHHHHHHHHHc---CCHHHHHHHHHHHHHC
Q 048743 335 FRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTL--CSDVIDALIQL---GFLEAAHDILDDMELA 409 (653)
Q Consensus 335 ~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~~li~~~~~~---g~~~~a~~~~~~m~~~ 409 (653)
.+..++...|..|+|+.|+++++.-.....+.++..- -..|+.+-... .+...|...-.+- .
T Consensus 190 -----------A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a--~ 256 (531)
T COG3898 190 -----------AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA--N 256 (531)
T ss_pred -----------HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--h
Confidence 3457888888899999999988877665543333221 23344333221 2344444443333 2
Q ss_pred CCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHH
Q 048743 410 GHPMDSTTY-KSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQ 488 (653)
Q Consensus 410 g~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 488 (653)
.+.||...- -....++.+.|+..++-.+++.+-+..-.|+. ..++. +.+.|+.- ..-++
T Consensus 257 KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~lY~----------------~ar~gdta--~dRlk 316 (531)
T COG3898 257 KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--ALLYV----------------RARSGDTA--LDRLK 316 (531)
T ss_pred hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HHHHH----------------HhcCCCcH--HHHHH
Confidence 345554432 23456788889999999999998886555553 11111 22344432 22222
Q ss_pred HHHH-ccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHH
Q 048743 489 EMRE-EAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHS-SLEMYRDITILWGDIK 561 (653)
Q Consensus 489 ~m~~-~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-~~~~~~~a~~~~~~~~ 561 (653)
.... ..++| |..+--.+..+-...|++..|..--+.... ..|....|..|-+.-. ..|+-.++.+.+....
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 2221 12234 555666677777788888877665554433 5788888888877644 4588888888776554
No 357
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.11 E-value=51 Score=23.07 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Q 048743 578 TLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 578 ~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 46788888888888888887775
No 358
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=47.92 E-value=1.2e+02 Score=23.82 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=55.9
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 048743 359 KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALL 438 (653)
Q Consensus 359 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 438 (653)
..++|.-+-+.+...+ .....+--+=++.+...|++++|..+.+.+ +.||...|.+|-. .+.|..+++..-+
T Consensus 20 cHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 4577777777776655 222222334456677889999999988766 5799999987643 5678888888878
Q ss_pred HHHHHcCC
Q 048743 439 KQMRKSCL 446 (653)
Q Consensus 439 ~~m~~~~~ 446 (653)
..|...|-
T Consensus 92 ~rla~sg~ 99 (115)
T TIGR02508 92 NRLAASGD 99 (115)
T ss_pred HHHHhCCC
Confidence 78877653
No 359
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.65 E-value=11 Score=30.99 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=23.9
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048743 583 FLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEF 615 (653)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 615 (653)
+...|.-..|..+|..|.++|.+||. |+.|+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll 135 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALL 135 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHH
Confidence 34456667799999999999999996 44454
No 360
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=47.59 E-value=2.9e+02 Score=28.40 Aligned_cols=94 Identities=12% Similarity=0.111 Sum_probs=57.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048743 338 GKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTT 417 (653)
Q Consensus 338 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 417 (653)
..+.-+..|-++=+.+.|-.|+++-...+++.=..- ..+|.+-.+.|+-++. .|..+-| +.+.+.|..++..+
T Consensus 108 a~VN~tT~TNStPLraACfDG~leivKyLvE~gad~--~IanrhGhTcLmIa~y-kGh~~I~----qyLle~gADvn~ks 180 (615)
T KOG0508|consen 108 ASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADP--EIANRHGHTCLMIACY-KGHVDIA----QYLLEQGADVNAKS 180 (615)
T ss_pred CccccccccCCccHHHHHhcchhHHHHHHHHcCCCC--cccccCCCeeEEeeec-cCchHHH----HHHHHhCCCcchhc
Confidence 334444455546667777788888777776432222 2444444555555443 4555544 45556788888887
Q ss_pred H--HHHHHHHHHcCChHHHHHHH
Q 048743 418 Y--KSLLTAYYKVKMFREAEALL 438 (653)
Q Consensus 418 ~--~~li~~~~~~~~~~~a~~~~ 438 (653)
+ |+.+.-|+.+|..|-...++
T Consensus 181 ~kGNTALH~caEsG~vdivq~Ll 203 (615)
T KOG0508|consen 181 YKGNTALHDCAESGSVDIVQLLL 203 (615)
T ss_pred ccCchHHHhhhhcccHHHHHHHH
Confidence 7 78888888888876554443
No 361
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=47.48 E-value=2.7e+02 Score=26.81 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
.+...+.|..+|.+.+|.++.++...-. +.+...|-.|+..+...|+--.+..-++.+.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 5666788999999999999999887653 45778889999999999998888777777754
No 362
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.10 E-value=4e+02 Score=28.76 Aligned_cols=284 Identities=11% Similarity=-0.031 Sum_probs=151.9
Q ss_pred hhhHHHHHHHHHhcCCCccHHHH-HHHHHH-HHhcCChhhhHHHHHHhhh-------cCCCcccchhHHHHHHHHhhhcc
Q 048743 193 SLKGQHIMELMSQTGVVADAHSI-IILAQI-HEMNCQRDELKKFKCYIDQ-------LSTPFAHHYQQFYESLLSLHFKF 263 (653)
Q Consensus 193 ~~~a~~l~~~m~~~g~~p~~~t~-~~ll~~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~~li~~~~~~ 263 (653)
...|.+.++...+.|..-..... .....+ .+...+.+.|...++.... .+.+. ....+-.+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~------a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP------AQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc------cccHHHHHHhcC
Confidence 45788888888887732222222 233333 5567788888888888766 33222 234555555553
Q ss_pred C-----CHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcC
Q 048743 264 D-----DIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNG 338 (653)
Q Consensus 264 g-----~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (653)
. +.+.|..++.+-..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~------------------------------------------------------------ 321 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAE------------------------------------------------------------ 321 (552)
T ss_pred CCCccccHHHHHHHHHHHHh------------------------------------------------------------
Confidence 2 55667777766621
Q ss_pred CCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCH
Q 048743 339 KLLHSNRAMAKLINGYKK-HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALI--QLGFLEAAHDILDDMELAGHPMDS 415 (653)
Q Consensus 339 ~~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~ 415 (653)
.-.|+...+-..+.-... ..+...|.++|......| .....-+-.++.... -..+...|..++.+..+.| .|..
T Consensus 322 ~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A 398 (552)
T KOG1550|consen 322 LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSA 398 (552)
T ss_pred cCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-Chhh
Confidence 111333222222222222 356789999999998888 333332333333222 2347889999999999888 3333
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccC
Q 048743 416 TTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAA 495 (653)
Q Consensus 416 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 495 (653)
.--...+..+.. +.++.+.-.+..+...|..-.......+. .. ............+...+...+......|
T Consensus 399 ~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~----~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~g- 469 (552)
T KOG1550|consen 399 AYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLL----DQ---SEEDLFSRGVISTLERAFSLYSRAAAQG- 469 (552)
T ss_pred HHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHH----Hh---ccccccccccccchhHHHHHHHHHHhcc-
Confidence 333344555555 88888888888887766543321111111 00 0000000111345666777777766665
Q ss_pred CCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHH----HHhccCCHHHHHHHHHHHH
Q 048743 496 LSTIYKLNSSIYFFCKG----KMIGDALKIYRRMQEMKIRPTVETFYYLVY----GHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 496 ~p~~~~y~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~----~~~~~~~~~~a~~~~~~~~ 561 (653)
+......|-+.|... .+++.|...+..-.+.+ ...+|+ +-. +..... +..|.++++...
T Consensus 470 --~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~-~~~a~~~~~~~~ 536 (552)
T KOG1550|consen 470 --NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV-LHLAKRYYDQAS 536 (552)
T ss_pred --CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-hHHHHHHHHHHH
Confidence 444445555544433 34777777777666554 222222 111 122233 566777776554
No 363
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=46.98 E-value=3.4e+02 Score=27.82 Aligned_cols=61 Identities=7% Similarity=0.018 Sum_probs=48.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCc--cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 048743 537 FYYLVYGHSSLEMYRDITILWGDIKRNIESGVLA--VSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNM 604 (653)
Q Consensus 537 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 604 (653)
...|+.-|...|++.+|.+.+.++ |++ -....+.+++.+.-+.|+-+..+.++++.-+.|+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeL-------gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKEL-------GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHh-------CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 567888899999999999988665 333 2455688888888999988888888888877765
No 364
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.82 E-value=2.5e+02 Score=25.81 Aligned_cols=96 Identities=15% Similarity=0.211 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC---CHHHHH--HHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc
Q 048743 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP---TVETFY--YLVYGHSSLEMYRDITILWGDIKRNIESGVLAV 571 (653)
Q Consensus 497 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p 571 (653)
+...-+|.||--|.-...+.+|-+.|.. +.|+.| |..+++ .-|+.....|++++|++....+.-. -+.-
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe----iLd~ 97 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE----ILDT 97 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH----HHcc
Confidence 3445567777777766667777776664 556665 444443 5666778999999999988766422 1223
Q ss_pred CHHHHHHH----HHHHHhCCCHHHHHHHHHH
Q 048743 572 SRDLYETL----LLNFLQGGYFERVMEVIGY 598 (653)
Q Consensus 572 ~~~~y~~l----i~~~~~~g~~~~a~~~~~~ 598 (653)
|...+-.| +--+.|.|..++|+++.+.
T Consensus 98 n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 98 NRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33222222 2236688888888887653
No 365
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.80 E-value=3.8e+02 Score=27.84 Aligned_cols=93 Identities=16% Similarity=0.102 Sum_probs=58.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHh-cCCCCC--H-----HHHHHHHHH-HhccCCHHHHHHHHHHHHHHhhhCCCccCHHH
Q 048743 505 SIYFFCKGKMIGDALKIYRRMQE-MKIRPT--V-----ETFYYLVYG-HSSLEMYRDITILWGDIKRNIESGVLAVSRDL 575 (653)
Q Consensus 505 li~~~~~~g~~~~a~~~~~~m~~-~g~~p~--~-----~t~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~ 575 (653)
++-+-.-.|++.+|++-..+|++ ..-.|. . .....++.- |+..+.++.|..-|.+..+...+.++ -...
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl--~a~~ 406 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL--QAFC 406 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH--HHHH
Confidence 33334468999999999999987 222344 1 122334433 55678899999999887654333322 1122
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Q 048743 576 YETLLLNFLQGGYFERVMEVIGYM 599 (653)
Q Consensus 576 y~~li~~~~~~g~~~~a~~~~~~m 599 (653)
-..+...|.+.|+.+.-.++++..
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~i 430 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDLI 430 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHhc
Confidence 223455789999888777777655
No 366
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=44.76 E-value=2.3e+02 Score=25.29 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=40.0
Q ss_pred cCCCCchhhHHHHHHHHHhcCCh----hhHHHHHHHHHhcCCCccHH----HHHHHHHHHHhcCChhhhHHHHHHh
Q 048743 171 ELIKPDTMIFNLVLHACVRFGSS----LKGQHIMELMSQTGVVADAH----SIIILAQIHEMNCQRDELKKFKCYI 238 (653)
Q Consensus 171 ~~~~~~~~~yn~li~~~~~~g~~----~~a~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~ 238 (653)
.|..++...+|.++.-+.+..-. +.+.++=.+....++.++-. ....-++.|.+.||+.+.-.+|-.+
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv 77 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINV 77 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhH
Confidence 35567888888888877665444 44444444444444544333 3345566777888876665555433
No 367
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=43.08 E-value=4.7e+02 Score=28.37 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 408 (653)
+...-..++..|.+.|-.+.|.++.+.+..+- ..+.. |..-+.-+.++|+...+..+-+.+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~-~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGR-YGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHH-HHHHHHHHH-----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCC-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44556778888888888888888888766554 22223 67777777777777766666555543
No 368
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.38 E-value=1.4e+02 Score=32.01 Aligned_cols=80 Identities=9% Similarity=-0.040 Sum_probs=47.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHH
Q 048743 504 SSIYFFCKGKMIGDALKIYRRMQEM--KIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLL 581 (653)
Q Consensus 504 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~ 581 (653)
+|+.+|...|++-++.++++..... |-+.=...||..|+...+.|.++- ..+...+.+.++...+.-|..||..|++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l-~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFEL-TDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccH-HHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 6777777788888887777777652 333334557777777777775542 2333333333344445566666666555
Q ss_pred HHH
Q 048743 582 NFL 584 (653)
Q Consensus 582 ~~~ 584 (653)
+-.
T Consensus 112 ~sl 114 (1117)
T COG5108 112 ASL 114 (1117)
T ss_pred hhc
Confidence 433
No 369
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.06 E-value=3.2e+02 Score=26.14 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHH----HhcCCCCCHHHHHHHH-HHHhccCCHHHHHHHH
Q 048743 503 NSSIYFFCKGKMIGDALKIYRRM----QEMKIRPTVETFYYLV-YGHSSLEMYRDITILW 557 (653)
Q Consensus 503 ~~li~~~~~~g~~~~a~~~~~~m----~~~g~~p~~~t~~~li-~~~~~~~~~~~a~~~~ 557 (653)
.-+|..+.+.|++.+|+.+.+.. ++..=+|+..+...+= .+|-...++..+..-+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSL 188 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASL 188 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHH
Confidence 45788888999999998865544 4444456655433222 2344444444443333
No 370
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.05 E-value=3.1e+02 Score=26.62 Aligned_cols=53 Identities=11% Similarity=0.146 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 385 DVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 385 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
.++..+.+..++....+.+..+.. ...-...+..+...|++..|+++..+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344555555555555555555532 33334556677788888888888877765
No 371
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=40.97 E-value=1.2e+02 Score=24.76 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=26.4
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048743 335 FRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEH 374 (653)
Q Consensus 335 ~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 374 (653)
+..-.+.|++......+.+|.+.+|+..|.++|+-++.+-
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 3444566777777777777777777777777777666544
No 372
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.95 E-value=2.4e+02 Score=29.58 Aligned_cols=107 Identities=8% Similarity=-0.120 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHH
Q 048743 74 QKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLI 153 (653)
Q Consensus 74 ~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~ 153 (653)
++..+.+.++....+...+......++.... |++..|+.++++....+ ....|+..+..
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~--Gd~RdAL~lLeq~i~~~--~~~it~~~V~~----------------- 241 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKKGD--GSVRDMLSFMEQAIVFT--DSKLTGVKIRK----------------- 241 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--ChHHHHHHHHHHHHHhC--CCCcCHHHHHH-----------------
Q ss_pred HHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHH
Q 048743 154 QLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIIL 218 (653)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l 218 (653)
-.--.+...+..++++....+....|+.++++|.+.|..|.......+
T Consensus 242 -----------------~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~ 289 (484)
T PRK14956 242 -----------------MIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSI 289 (484)
T ss_pred -----------------HhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHH
No 373
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.94 E-value=3.3e+02 Score=26.03 Aligned_cols=74 Identities=18% Similarity=0.119 Sum_probs=34.1
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHH
Q 048743 510 CKGKMIGDALKIYRRMQEMKIRPTVE-------TFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLN 582 (653)
Q Consensus 510 ~~~g~~~~a~~~~~~m~~~g~~p~~~-------t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~ 582 (653)
.+.+++++|+..+.+....|+..|.. |...+.+.|...|+...--+........|.+....-......++|..
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiek 93 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEK 93 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHh
Confidence 34555566666666665555544432 33344455555555554444444333333333222233334444443
Q ss_pred H
Q 048743 583 F 583 (653)
Q Consensus 583 ~ 583 (653)
+
T Consensus 94 f 94 (421)
T COG5159 94 F 94 (421)
T ss_pred c
Confidence 3
No 374
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.09 E-value=1.4e+02 Score=25.29 Aligned_cols=65 Identities=12% Similarity=0.067 Sum_probs=48.0
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCH
Q 048743 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMY 550 (653)
Q Consensus 485 ~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 550 (653)
.+.+.+.+.|++++.. -..++..+...++.-.|.++++++.+.+...+..|.-.-++.+...|-+
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 4455666777766543 4677788887877788999999999888777777766667777777643
No 375
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=40.06 E-value=4.6e+02 Score=27.48 Aligned_cols=64 Identities=8% Similarity=0.001 Sum_probs=37.6
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048743 378 GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
.|....-+++..++.+....-+..+..+|..-| -+...|..++..|..+ ..++-..+++++.+.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 333335566666666666666666666666544 2556666666666665 455555666655554
No 376
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.96 E-value=2.1e+02 Score=26.87 Aligned_cols=62 Identities=11% Similarity=-0.057 Sum_probs=43.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhhCCC-ccCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 539 YLVYGHSSLEMYRDITILWGDIKRNIESGVL-AVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 539 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
.+-.-|.+.|++++|.++|+.+....+..|. .+...+...+..++.+.|+.+..+.+.=+|.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4556688889999999988887644444443 3455566677778888888888877765554
No 377
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=39.92 E-value=1.7e+02 Score=28.57 Aligned_cols=63 Identities=6% Similarity=0.048 Sum_probs=33.3
Q ss_pred HhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHH--HHHHHHhCCCHHHHHHHHHHHHh-----CCCCCC
Q 048743 544 HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYET--LLLNFLQGGYFERVMEVIGYMKK-----QNMYVD 607 (653)
Q Consensus 544 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~--li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~ 607 (653)
.-+.++.++|.++++++.+..+... .|+...|-. ..+.+...|+.+++.+++++.++ .|++|+
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~-e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~ 154 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYK-EPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSN 154 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChh
Confidence 3344456666666666655544332 334444432 33445556666666666666655 455553
No 378
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=39.34 E-value=5.1e+02 Score=27.70 Aligned_cols=185 Identities=10% Similarity=-0.043 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHP--MDSTTYKS 420 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ 420 (653)
+..+|..-+.--.+.|+.+.+.-+|+...-.- ..-+.. |--.+.-....|+.+.|..++..-.+-.++ |....+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~ef-Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEF-WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHH-HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 44688888888889999999999998875432 112222 555555555669999998888766554332 33333333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHH---HHHHHHHHccCCC
Q 048743 421 LLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE---SLIQEMREEAALS 497 (653)
Q Consensus 421 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~---~~~~~m~~~~~~p 497 (653)
.+ .-..|+++.|..+++.+.+.- |+.....+... .+..+.|+.+.+. .++....+...
T Consensus 374 ~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~-------------~~e~r~~~~~~~~~~~~l~s~~~~~~~-- 434 (577)
T KOG1258|consen 374 RF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKI-------------NWERRKGNLEDANYKNELYSSIYEGKE-- 434 (577)
T ss_pred HH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHH-------------hHHHHhcchhhhhHHHHHHHHhccccc--
Confidence 33 223579999999999998763 65411111110 0112356666666 33333332222
Q ss_pred CHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC
Q 048743 498 TIYKLNSSIYFFC-----KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEM 549 (653)
Q Consensus 498 ~~~~y~~li~~~~-----~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 549 (653)
+..+.+.+.--++ -.++.+.|..++.+|.+. .+++..-|..+++-+...+.
T Consensus 435 ~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 435 NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 2223333333232 367788899999888765 56677778888877666553
No 379
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=39.24 E-value=2e+02 Score=29.51 Aligned_cols=116 Identities=12% Similarity=0.066 Sum_probs=74.9
Q ss_pred cCCHHHH-HHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 048743 477 MDKSDLA-ESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITI 555 (653)
Q Consensus 477 ~~~~~~a-~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 555 (653)
.|++-.| .++++.+....-.|+....-+.|. ...|+++.+...+...... +.....+..++++.....|++++|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~--~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIF--SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHH--HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 4666555 455666666655677666555555 6678899998888765432 44566778889999999999999988
Q ss_pred HHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 556 LWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 556 ~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
+-.-|. ...+ .+...........-..|-++++.-.+++..
T Consensus 379 ~a~~~l----~~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 379 TAEMML----SNEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHh----cccc-CChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 876665 2222 233333333333344566777777777764
No 380
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.19 E-value=1.1e+02 Score=21.34 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=12.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHH
Q 048743 504 SSIYFFCKGKMIGDALKIYRRMQ 526 (653)
Q Consensus 504 ~li~~~~~~g~~~~a~~~~~~m~ 526 (653)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 35556666666666666655554
No 381
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=39.18 E-value=2.9e+02 Score=24.91 Aligned_cols=52 Identities=17% Similarity=0.047 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCc
Q 048743 19 REVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEP 70 (653)
Q Consensus 19 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 70 (653)
...+..+++.+.-.|+++.|.++|--+.+.+...-...|+.=+..+.+.+..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~ 92 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQ 92 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCc
Confidence 3467788899999999999999999999965444445677777777777654
No 382
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=38.02 E-value=1.7e+02 Score=22.20 Aligned_cols=66 Identities=11% Similarity=-0.023 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 048743 363 LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAE 435 (653)
Q Consensus 363 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 435 (653)
+.+++..+.+++.... .....+-.+-...|+.+.|.+++..+. .| +..|..+++++...|..+-|.
T Consensus 21 ~~~v~d~ll~~~ilT~--~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLTE--EDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCCH--HHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 3445555555552211 112333322234466777777777666 42 345566666666666655443
No 383
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=37.97 E-value=1.4e+02 Score=20.90 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=28.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HHcCChHHHHHHH
Q 048743 390 LIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY-----YKVKMFREAEALL 438 (653)
Q Consensus 390 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-----~~~~~~~~a~~~~ 438 (653)
+...|++-+|.++++++-..--.|....|..+|... .+.|+...|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 445677777777777775433334555566666543 3456666666553
No 384
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.89 E-value=2.2e+02 Score=23.45 Aligned_cols=44 Identities=9% Similarity=0.025 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 048743 362 ELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405 (653)
Q Consensus 362 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 405 (653)
.+.++|..|...++...-...|......+...|++.+|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888888775555555577778888888888888888764
No 385
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=37.67 E-value=2.6e+02 Score=30.88 Aligned_cols=37 Identities=11% Similarity=-0.028 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH
Q 048743 177 TMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS 214 (653)
Q Consensus 177 ~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t 214 (653)
......|+.++.+ ++...++.++++|...|+.+....
T Consensus 246 ~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~~~l 282 (709)
T PRK08691 246 KQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFDNAL 282 (709)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHHHH
Confidence 3345566666555 999999999999999998765443
No 386
>PF05373 Pro_3_hydrox_C: L-proline 3-hydroxylase, C-terminal; InterPro: IPR008035 Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyse oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalysing oxidation of a free alpha-amino acid. The structure contains conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. The structure differs significantly from many other 2-OG oxygenases in possessing a discrete C-terminal helical domain.; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 1E5S_A 1E5R_B.
Probab=37.38 E-value=50 Score=25.65 Aligned_cols=69 Identities=16% Similarity=0.031 Sum_probs=39.8
Q ss_pred ccccchHHHHHHHHHHHH---hccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHH
Q 048743 13 SWEGSSREVLLRKLESAS---KNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLK 82 (653)
Q Consensus 13 ~~~~p~~~~~~~~i~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 82 (653)
+..+.+.+....++. ++ ...++.+-..++...==....+...+|.+|...+.++|++..+++|..+-.=
T Consensus 21 ~R~~~t~e~~e~Ll~-ls~vis~~n~r~i~~~LaK~Hf~~d~~~~~~yDWL~eia~rsGD~alv~kA~~lrry 92 (101)
T PF05373_consen 21 SRPPLTEEERERLLA-LSAVISRENFRDIVFLLAKVHFTRDAHPAEAYDWLIEIARRSGDPALVEKAERLRRY 92 (101)
T ss_dssp --EE--HHHHHHHHG-GGGT--TTTHHHHHHHHCCHHHHEES-TTHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445556666654 33 2345655555554432222346677999999999999998888777776543
No 387
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=37.28 E-value=3.2e+02 Score=24.73 Aligned_cols=97 Identities=10% Similarity=-0.020 Sum_probs=64.0
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccC-HHHHHHHHH
Q 048743 508 FFCKGKMIGDALKIYRRMQEMKIRPT-----VETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVS-RDLYETLLL 581 (653)
Q Consensus 508 ~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~-~~~y~~li~ 581 (653)
-+.+.|++++|..-|.+.++. +++. ++.|..-..++.+.+.++.|+.-..... .+.|+ ......-..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai------el~pty~kAl~RRAe 176 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI------ELNPTYEKALERRAE 176 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH------hcCchhHHHHHHHHH
Confidence 456799999999999998875 2332 2344444557778888888887765554 33341 122222344
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 048743 582 NFLQGGYFERVMEVIGYMKKQNMYVDKLMYKS 613 (653)
Q Consensus 582 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 613 (653)
+|.+..++++|++=|+.+.+. .|...-..-
T Consensus 177 ayek~ek~eealeDyKki~E~--dPs~~ear~ 206 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILES--DPSRREARE 206 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHh--CcchHHHHH
Confidence 688889999999999999855 455443333
No 388
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=36.46 E-value=5.9e+02 Score=27.62 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=44.5
Q ss_pred CCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccC
Q 048743 52 PERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENL 125 (653)
Q Consensus 52 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 125 (653)
+.+..+..+++.+.... .++-.+++.++.. .. ...+..+++++...|......-+.+.+....+.
T Consensus 308 ~~~~~f~~lv~~lR~~~----~e~l~~l~~~~~~-~~----~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~ 372 (574)
T smart00638 308 PAAAKFLRLVRLLRTLS----EEQLEQLWRQLYE-KK----KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT 372 (574)
T ss_pred chHHHHHHHHHHHHhCC----HHHHHHHHHHHHh-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 45567888888887665 3566666666532 21 678889999999999766666666666655443
No 389
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.12 E-value=3.8e+02 Score=28.56 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=28.5
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH
Q 048743 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS 214 (653)
Q Consensus 175 ~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t 214 (653)
++....-.|++++.. |+.+.+++++++|...|..|....
T Consensus 244 ~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~il 282 (509)
T PRK14958 244 IEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSNAL 282 (509)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 344444556665554 999999999999999998876544
No 390
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=36.04 E-value=1.6e+02 Score=28.73 Aligned_cols=94 Identities=14% Similarity=-0.017 Sum_probs=57.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048743 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKM 430 (653)
Q Consensus 351 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 430 (653)
-+-|.+.|.+++|+..|..-.... |.|.++|..-..+|.+...+..|..=........- .-+..|+.-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhh
Confidence 345788999999999999877766 77888899999999998888776655544433210 012233333333333344
Q ss_pred hHHHHHHHHHHHHcCCccC
Q 048743 431 FREAEALLKQMRKSCLVQN 449 (653)
Q Consensus 431 ~~~a~~~~~~m~~~~~~p~ 449 (653)
..+|.+-++...+ ++|.
T Consensus 181 ~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHHhHHHHHh--hCcc
Confidence 4444444444433 4555
No 391
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.88 E-value=6.5e+02 Score=27.98 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY 425 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (653)
.....|+.+.-.|++++|-...-.|-... ..-|.-.+..+...++......+ +....-+.+...|..++..+
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~-----~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~ 465 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNN-----AAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEF 465 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcch-----HHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHH
Confidence 55677888888888888887777775433 33366666666665554432222 22221224566777777777
Q ss_pred HH
Q 048743 426 YK 427 (653)
Q Consensus 426 ~~ 427 (653)
..
T Consensus 466 L~ 467 (846)
T KOG2066|consen 466 LA 467 (846)
T ss_pred HH
Confidence 66
No 392
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=35.84 E-value=7.2e+02 Score=28.44 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=23.9
Q ss_pred HHHHHHHHHHH-HHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 048743 480 SDLAESLIQEM-REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQ 526 (653)
Q Consensus 480 ~~~a~~~~~~m-~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 526 (653)
.+.....+.++ .+.|+..+...+..++. ...|++..++.+++++.
T Consensus 181 ~~~l~~~L~~il~~EGv~id~eal~lLa~--~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 181 PEVMRGYLERICAQEGVPVEPGVLPLVIR--AGGGSVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH
Confidence 34444444443 34455545555554444 23466777777777665
No 393
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.70 E-value=1.4e+02 Score=23.75 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcC--CHHHHHHHHHHHHHCCC
Q 048743 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG--FLEAAHDILDDMELAGH 411 (653)
Q Consensus 348 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~ 411 (653)
..++.-|...++.++|...+.++.... ..... ...++..+...+ .-+.+..++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~v-v~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEV-VKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHH-HHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 466777888899999999998874332 11112 333344443332 23345666666666654
No 394
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=35.55 E-value=3.2e+02 Score=24.23 Aligned_cols=201 Identities=17% Similarity=0.087 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (653)
...+......+...+++..+...+.........+.....+......+...++...+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 4567788888889999999999988877521124444557777888888899999999999988754443 222222233
Q ss_pred -HHHHcCChHHHHHHHHHHHHcCCccC--chhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHH
Q 048743 424 -AYYKVKMFREAEALLKQMRKSCLVQN--LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500 (653)
Q Consensus 424 -~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 500 (653)
.+...|+++.+...+..... ..|. .......... ..+...++.+.+...+.............
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 203 (291)
T COG0457 138 GALYELGDYEEALELYEKALE--LDPELNELAEALLALG------------ALLEALGRYEEALELLEKALKLNPDDDAE 203 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhh------------hHHHHhcCHHHHHHHHHHHHhhCcccchH
Confidence 78899999999999999855 3342 1111111100 00233678999999999888765321356
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT-VETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 501 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
.+..+-..+...++++.|...+...... .|+ ...+..+...+...+..+.+...+....
T Consensus 204 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 204 ALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 7888888889999999999999998874 333 3444555555557777889988887765
No 395
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=34.88 E-value=3.3e+02 Score=28.08 Aligned_cols=53 Identities=9% Similarity=-0.056 Sum_probs=34.3
Q ss_pred cCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHH---HHhcCCCCCCcccHHHHHHH
Q 048743 337 NGKLLHSNRAM-AKLINGYKKHGKNSELSWLLLS---IKKEHHSFGESTLCSDVIDA 389 (653)
Q Consensus 337 ~~~~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~---m~~~~~~~~~~~~~~~li~~ 389 (653)
-+.-+||..-| .--...|+.+|+++..+++|+. |+++...|.+.-|-+.+++.
T Consensus 329 Lgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsF 385 (615)
T KOG0508|consen 329 LGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSF 385 (615)
T ss_pred hCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHH
Confidence 34455666444 2234457788888888888774 77776666666667777663
No 396
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=34.64 E-value=2.6e+02 Score=23.04 Aligned_cols=121 Identities=12% Similarity=0.097 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccc
Q 048743 395 FLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTS 474 (653)
Q Consensus 395 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 474 (653)
++.-|.+++.++...+ -+...++.+....---.++++..++....-.|..........|+...-. +.|-+
T Consensus 4 Np~IA~~~l~~l~~s~------~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~----~kd~~ 73 (126)
T PF10155_consen 4 NPNIAIEILVKLINSP------NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCES----IKDKY 73 (126)
T ss_pred cHHHHHHHHHHHcCCc------hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHh----hcccc
Confidence 4455666666554432 1555666666666667777777777766555655444444444332111 11222
Q ss_pred cccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 048743 475 SLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRM 525 (653)
Q Consensus 475 ~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m 525 (653)
.......-.-.+++.+.+.++.-....|.-+=.-|.+..+..+|-.+|+-+
T Consensus 74 ~q~R~VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 74 MQNRLVRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred cccchhhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 222233333334445555444222222222333333444555555555543
No 397
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.92 E-value=6.9e+02 Score=27.66 Aligned_cols=182 Identities=12% Similarity=0.085 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHhccCCchhHHHH-HHHHHHHHhcCCCchHHHHHHHHH-cCccCCCchhHHHHHHHHhhcccccccchHH
Q 048743 74 QKACDLVLKIQKGKADLLQLDLL-AKLSLSLARAQMPVPASMILRLML-GRENLPCSDLLLLVFVHMVKTEIGTCLASNF 151 (653)
Q Consensus 74 ~~a~~~~~~~~~~~~~~~~~~t~-~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~ 151 (653)
.+.+...+.+..... .|+..+- -.+-+.|-..|++++|++.--... .-.+.+++..+.+++..++..
T Consensus 40 sd~l~~IE~lyed~~-F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~---------- 108 (929)
T KOG2062|consen 40 SDSLPKIESLYEDET-FPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM---------- 108 (929)
T ss_pred hhhHHHHHHHhccCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH----------
Confidence 344444444433332 2433333 223346777888888887653332 335778888888888766644
Q ss_pred HHHHH-HHhhhhhhhhcCCccCCCCch-hhHHHHHHHHHhcCChhhHHHH---------HHH-HHhcCCCccHHHHH--H
Q 048743 152 LIQLC-DVFLHLSAEKSNGAELIKPDT-MIFNLVLHACVRFGSSLKGQHI---------MEL-MSQTGVVADAHSII--I 217 (653)
Q Consensus 152 l~~~~-~~~~~~~~a~~~~~~~~~~~~-~~yn~li~~~~~~g~~~~a~~l---------~~~-m~~~g~~p~~~t~~--~ 217 (653)
.++.. ..++..+ +...+.+-. ...+-++..|...+++..|+-+ +++ ..+..-.++..+|. .
T Consensus 109 yi~~~~~~~~~~~-----~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l 183 (929)
T KOG2062|consen 109 YIETASETYKNPE-----QKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLEL 183 (929)
T ss_pred HHHHHHHHhcCcc-----ccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHH
Confidence 11111 1111111 012222222 3466777777777776655443 333 11222233333332 2
Q ss_pred HHHHHH-hcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcc
Q 048743 218 LAQIHE-MNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNR 278 (653)
Q Consensus 218 ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 278 (653)
++..-- +..+.+....+++.+...+.|+ |-.+..+|.-..|.+.|.++++++.+
T Consensus 184 ~~s~v~~~efR~~vlr~lv~~y~~~~~PD-------y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 184 LISLVNNREFRNKVLRLLVKTYLKLPSPD-------YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHccCCCCC-------eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 222222 2233344444555555555555 67889999999999999999999955
No 398
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=33.67 E-value=3.2e+02 Score=28.22 Aligned_cols=227 Identities=12% Similarity=0.037 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048743 359 KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF-----------LEAAHDILDDMELAGHPMDSTTYKSLLTAYYK 427 (653)
Q Consensus 359 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 427 (653)
++++|.++.+.+ |.+.. +...+.-.-+.|. +++-.++++.+.+.| .......-|+.|-+
T Consensus 29 d~~eav~y~k~~------p~~k~-f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g---~ad~lp~TIDSyTR 98 (480)
T TIGR01503 29 DLQDAVDYHKSI------PAHKN-FAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG---GADFLPSTIDAYTR 98 (480)
T ss_pred CHHHHHHHHHhC------Ccccc-HHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc---CCCccceeeecccc
Q ss_pred cCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 048743 428 VKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIY 507 (653)
Q Consensus 428 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~ 507 (653)
.+++++|..-+++-.+.|...=.-+-++.. .+....-++.
T Consensus 99 ~n~y~~A~~~l~~s~~~~~s~LNGfP~Vnh----------------------------------------Gv~~~R~l~~ 138 (480)
T TIGR01503 99 QNRYDEAAVGIKESIKAGRSLLNGFPGVNH----------------------------------------GVKGCRKVLE 138 (480)
T ss_pred cccHHHHHHHHHhhhhcCcccccCCCcccc----------------------------------------cHHHHHHHHH
Q ss_pred HHH-----cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhC---CCccCHHHHHHH
Q 048743 508 FFC-----KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESG---VLAVSRDLYETL 579 (653)
Q Consensus 508 ~~~-----~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~p~~~~y~~l 579 (653)
+.- ++|. ..+..+++-+...|+.-...---+.---|++.--+++++..|+..-+.+... |+..|..+|..|
T Consensus 139 ~v~~PvQvRHGt-pDarlL~e~~~a~G~~a~EGG~ISYnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpL 217 (480)
T TIGR01503 139 AVNLPLQIRHGT-PDARLLAEIILAGGFTSFEGGGISYNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPL 217 (480)
T ss_pred hCCCCeeccCCC-CcHHHHHHHHHHcCCCccCCCcceeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCC
Q ss_pred HHHHHhCCCHHHHHHHHHHH--HhCCCCCCHHhHHHHHHHhhhhhHHhhhhhHHHHHHHHHhhHh
Q 048743 580 LLNFLQGGYFERVMEVIGYM--KKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVN 642 (653)
Q Consensus 580 i~~~~~~g~~~~a~~~~~~m--~~~g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (653)
...++--. .--|..+++-+ .+.|++-=...|. ..|++-+...+...+-+...+.+++
T Consensus 218 tgtLvPPs-isiav~ilE~Lla~eqGVksisvgy~-----Q~Gn~~QDiaai~aL~~l~~eYl~~ 276 (480)
T TIGR01503 218 TGTLVPPS-ISNAIGIIEGLLAAEQGVKNITVGYG-----QVGNLTQDIAALRALEEQTNEYLKA 276 (480)
T ss_pred CCCccChH-HHHHHHHHHHHHHHHcCCeEEEeccc-----cCCChHHHHHHHHHHHHHHHHHHHh
No 399
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.29 E-value=3.6e+02 Score=24.25 Aligned_cols=90 Identities=9% Similarity=-0.105 Sum_probs=59.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHH
Q 048743 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFY-----YLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETL 579 (653)
Q Consensus 505 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~l 579 (653)
+...+...|++++|+.-++.-... |....+. .|-+.....|.+|+|+..++... ..++ .......-
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~----~~~w--~~~~~elr 165 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIK----EESW--AAIVAELR 165 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc----cccH--HHHHHHHh
Confidence 345667889999999888876642 2222233 34456777889999988886553 1111 12223334
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCC
Q 048743 580 LLNFLQGGYFERVMEVIGYMKKQN 603 (653)
Q Consensus 580 i~~~~~~g~~~~a~~~~~~m~~~g 603 (653)
-+.+...|+-++|..-|+.-.+.+
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHcc
Confidence 566888999999999999888776
No 400
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=33.24 E-value=3.1e+02 Score=27.07 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=71.9
Q ss_pred cccccccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCC-CchhHHHHHHHhhccCCcchhhhHHHHHHHHHhc--
Q 048743 10 EKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIP-ERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKG-- 86 (653)
Q Consensus 10 ~~l~~~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-- 86 (653)
.+|..++.+.......++.+.+..+.+...+.++.+... .| +...|-..|...-..-..-.+.+..++|.+..+.
T Consensus 56 rAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~ 133 (321)
T PF08424_consen 56 RALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALS 133 (321)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 445566778888888899888888888888899998874 33 3446666666543322211244555555443221
Q ss_pred ---cCC----chhHH-------HHHHHHHHHHhcCCCchHHHHHHHHHcCcc-CCCc
Q 048743 87 ---KAD----LLQLD-------LLAKLSLSLARAQMPVPASMILRLMLGREN-LPCS 128 (653)
Q Consensus 87 ---~~~----~~~~~-------t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~ 128 (653)
.+. .+-.. .+.-+...+..+|..+.|+.+++-+.+.++ .|+.
T Consensus 134 ~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 134 RRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPES 190 (321)
T ss_pred HhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccc
Confidence 110 01112 233334445568999999999999998775 4444
No 401
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=33.23 E-value=2.2e+02 Score=21.78 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=14.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHh
Q 048743 580 LLNFLQGGYFERVMEVIGYMKK 601 (653)
Q Consensus 580 i~~~~~~g~~~~a~~~~~~m~~ 601 (653)
.......|++++|.+.+++..+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3345566777777777776643
No 402
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=33.04 E-value=4.3e+02 Score=25.07 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048743 178 MIFNLVLHACVRFGSSLKGQHIMELMSQT 206 (653)
Q Consensus 178 ~~yn~li~~~~~~g~~~~a~~l~~~m~~~ 206 (653)
.-.+.+|+.+.+.+....|+++.+.+...
T Consensus 83 l~L~~iL~~lL~~~~~~~a~~i~~~y~~l 111 (258)
T PF07064_consen 83 LFLHHILRHLLRRNLDEEALEIASKYRSL 111 (258)
T ss_pred echHHHHHHHHhcCCcHHHHHHHHHhccC
Confidence 34667889999999999999998888753
No 403
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.00 E-value=3.9e+02 Score=28.38 Aligned_cols=36 Identities=11% Similarity=0.025 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHH
Q 048743 177 TMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAH 213 (653)
Q Consensus 177 ~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 213 (653)
......|++++ ..++++.|+.+++++...|..|...
T Consensus 242 ~~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~~I 277 (504)
T PRK14963 242 QERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAARTL 277 (504)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 44455566665 5699999999999999998766543
No 404
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=32.44 E-value=1.6e+02 Score=19.86 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=21.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 420 SLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 420 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
.+.-|+.+.|++++|.+..+.+.+ +.|+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N 34 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDN 34 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCc
Confidence 345578888999999998888887 46764
No 405
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=32.43 E-value=2.9e+02 Score=26.79 Aligned_cols=70 Identities=20% Similarity=0.356 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHh----------CCC
Q 048743 519 LKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ----------GGY 588 (653)
Q Consensus 519 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~----------~g~ 588 (653)
.++|+.|.+.++.|.-..|..+.-.++..=.+.+.+.+|+.+... ..-|..|+..||. .|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD---------~~rfd~Ll~iCcsmlil~Re~il~~D 333 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD---------PQRFDFLLYICCSMLILVRERILEGD 333 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC---------hhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 367777777778888777777776777777777788888776521 1125555555443 566
Q ss_pred HHHHHHHHH
Q 048743 589 FERVMEVIG 597 (653)
Q Consensus 589 ~~~a~~~~~ 597 (653)
+..-+++++
T Consensus 334 F~~nmkLLQ 342 (370)
T KOG4567|consen 334 FTVNMKLLQ 342 (370)
T ss_pred hHHHHHHHh
Confidence 666555554
No 406
>PHA03100 ankyrin repeat protein; Provisional
Probab=32.09 E-value=6.1e+02 Score=26.53 Aligned_cols=106 Identities=12% Similarity=-0.106 Sum_probs=49.7
Q ss_pred hhhhhhhcCCccCCCCch---hhHHHHHHHHH-hcCChhhHHHHHHHHHhcCCCccHHH--HHHHHHHHHhcC--Chhhh
Q 048743 160 LHLSAEKSNGAELIKPDT---MIFNLVLHACV-RFGSSLKGQHIMELMSQTGVVADAHS--IIILAQIHEMNC--QRDEL 231 (653)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~---~~yn~li~~~~-~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~g--~~~~a 231 (653)
+..+.++.+.+.+..++. ...+.|.-+.. +.|+.+- ++.+.+.|..++... -...+..++..| +.+-+
T Consensus 84 ~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~i----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv 159 (480)
T PHA03100 84 DVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSI----VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKIL 159 (480)
T ss_pred chHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHH----HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHH
Confidence 445555555555554432 23444444433 5555544 444455676665443 234566666667 55555
Q ss_pred HHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHH
Q 048743 232 KKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELIL 274 (653)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 274 (653)
.-+++.-......+.. -.+.+...+..|+.+-+.-+++
T Consensus 160 ~~Ll~~g~din~~d~~-----g~tpL~~A~~~~~~~iv~~Ll~ 197 (480)
T PHA03100 160 KLLIDKGVDINAKNRY-----GYTPLHIAVEKGNIDVIKFLLD 197 (480)
T ss_pred HHHHHCCCCcccccCC-----CCCHHHHHHHhCCHHHHHHHHH
Confidence 5444432111111111 2234455556666665544443
No 407
>PF07827 KNTase_C: KNTase C-terminal domain; InterPro: IPR012481 Kanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit being composed of two domains. The C-terminal domain contains five alpha helices, four of which are organised into an up-and-down alpha helical bundle. Residues found in this domain may contribute to this enzyme's active site []. ; GO: 0016779 nucleotidyltransferase activity, 0046677 response to antibiotic; PDB: 1KNY_A.
Probab=31.85 E-value=2.1e+02 Score=23.86 Aligned_cols=108 Identities=10% Similarity=0.033 Sum_probs=55.6
Q ss_pred HHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCC---C----chhhHHHHHHHH
Q 048743 115 ILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIK---P----DTMIFNLVLHAC 187 (653)
Q Consensus 115 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~----~~~~yn~li~~~ 187 (653)
+|+++++.-..|+..++...|.... +-++|...|++..++. .|.. | +...|.++|-++
T Consensus 5 ~f~~lr~~a~~~~~e~f~~ai~e~l------------V~EmYE~igKlRN~~~---~G~~~~lp~~A~~~A~~~AmliGL 69 (143)
T PF07827_consen 5 FFEKLREAAESPESEEFRQAIREFL------------VGEMYEFIGKLRNARQ---SGPHTYLPYLAMQLAWYGAMLIGL 69 (143)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHH------------HHTHHHHHHHHHHHHH---H--GGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHH------------HHHHHHHHHHHhcccc---cCchhhhHHHHHHHHHHHHHHHHH
Confidence 3444444444556666555544322 3345555555544443 3322 1 445688999999
Q ss_pred HhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhh
Q 048743 188 VRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQ 240 (653)
Q Consensus 188 ~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (653)
.....+..--.++.+..+..-.|+.+- -+.+ ....|++..+..+++....
T Consensus 70 ~Nr~~ytT~a~~l~Eal~Lp~rP~Gyd--~l~~-lvm~G~L~d~~~i~~~cE~ 119 (143)
T PF07827_consen 70 HNRTLYTTSARVLPEALSLPSRPSGYD--ELAQ-LVMSGQLTDPEKIYESCEA 119 (143)
T ss_dssp HCT---SSCCCHHHHHTTSSS--TTHH--HHHH-HHHHTB---HHHHHHHHHH
T ss_pred hccceeeccccccHHHhcCCCCCccHH--HHHH-HHhccccCCHHHHHHHHHH
Confidence 998888887788888887655555543 3333 3346888888777766544
No 408
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.47 E-value=3.2e+02 Score=24.27 Aligned_cols=21 Identities=5% Similarity=-0.100 Sum_probs=13.3
Q ss_pred HHHHhccCCHHHHHHHHHHHH
Q 048743 541 VYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 541 i~~~~~~~~~~~a~~~~~~~~ 561 (653)
+-.|.+.|.+++|.++++.+.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHh
Confidence 345666777777776666554
No 409
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.41 E-value=5.7e+02 Score=25.96 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHC---------CCCC
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGEST---LCSDVIDALIQLGFLEAAHDILDDMELA---------GHPM 413 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~---------g~~p 413 (653)
.+.-+-+.|..+|+++.|++.|.+.+.-- ....+ .|-.+|..-.-.|+|.....+..+.... .+++
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYC--Ts~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYC--TSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhh--cchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 66788899999999999999999955433 22222 3555666666778887777766665443 2344
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHH
Q 048743 414 DSTTYKSLLTAYYKVKMFREAEALLK 439 (653)
Q Consensus 414 ~~~~~~~li~~~~~~~~~~~a~~~~~ 439 (653)
-...+..+...+.+ ++..|...|-
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL 253 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFL 253 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHH
Confidence 45555555554444 5666655543
No 410
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=31.25 E-value=5.2e+02 Score=25.46 Aligned_cols=124 Identities=14% Similarity=0.034 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhc---cCCHHHHHH
Q 048743 481 DLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP-TVETFYYLVYGHSS---LEMYRDITI 555 (653)
Q Consensus 481 ~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~---~~~~~~a~~ 555 (653)
+.-..++++..+.+ | +...+-.+|..+.+..+.++..+-|+++... .| +...|...|.-... .-.++....
T Consensus 48 E~klsilerAL~~n--p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 48 ERKLSILERALKHN--PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 44566666666553 4 7778888999999999999999999999986 33 45556666665433 345777777
Q ss_pred HHHHHHHHhhhCCCc------cCHHH-------HHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CCCH
Q 048743 556 LWGDIKRNIESGVLA------VSRDL-------YETLLLNFLQGGYFERVMEVIGYMKKQNM-YVDK 608 (653)
Q Consensus 556 ~~~~~~~~~~~~~~~------p~~~~-------y~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~ 608 (653)
+|....+.+....-. +-..+ +..+..-+..+|..+.|..+++.+.+-++ .|+.
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPES 190 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccc
Confidence 777655543222111 11112 22233335579999999999999988876 4543
No 411
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.24 E-value=1.4e+02 Score=21.24 Aligned_cols=52 Identities=8% Similarity=0.023 Sum_probs=39.9
Q ss_pred CCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 048743 172 LIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEM 224 (653)
Q Consensus 172 ~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 224 (653)
.+.|....++.++..+++..-.+.++..+.+..+.|. .+..+|.--+..+++
T Consensus 3 ~v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 3 IVVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp TEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3567888899999999999999999999999999985 355666655555543
No 412
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=30.10 E-value=2.5e+02 Score=22.20 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCCccC
Q 048743 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV--KMFREAEALLKQMRKSCLVQN 449 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~ 449 (653)
...++..|...|+.++|...+.++..... -......++..+... ..-+.+..++..+.+.+..+.
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~~~--~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~ 71 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLPSQ--HHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISK 71 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-GGG--HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-H
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCH
Confidence 35667788888999999999988643211 122233334433333 234455667777777665543
No 413
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=30.03 E-value=1.2e+02 Score=21.62 Aligned_cols=49 Identities=14% Similarity=0.061 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 048743 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546 (653)
Q Consensus 497 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 546 (653)
|+...++.++..+++-.-.++++..+.+..+.|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4555667777777776667777777777776664 344555554544443
No 414
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=29.83 E-value=6.5e+02 Score=26.12 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=10.3
Q ss_pred ccchhHHHHHHHHhhh
Q 048743 32 NHQVGEAWETFNDFQR 47 (653)
Q Consensus 32 ~~~~~~A~~~~~~~~~ 47 (653)
.....+|++....|..
T Consensus 44 tHSTkEALQqIRFm~G 59 (831)
T PRK15180 44 THTSSEALQQIRFILG 59 (831)
T ss_pred eecHHHHHHHHHHHhc
Confidence 3456677777777665
No 415
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=29.64 E-value=7.1e+02 Score=26.49 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC
Q 048743 383 CSDVIDALIQLGFLEAAHDILDDMELAGH-PMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN 449 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 449 (653)
...++.-|.+.+++++|..++..|-=.-. .---.+.+.+.+.+.+..--++.+..++...-.-..|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~ 478 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPT 478 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCC
Confidence 55678889999999999999988843211 01123445566666666656666666666665544444
No 416
>PLN03025 replication factor C subunit; Provisional
Probab=29.43 E-value=4.6e+02 Score=25.78 Aligned_cols=104 Identities=10% Similarity=0.067 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHH
Q 048743 74 QKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLI 153 (653)
Q Consensus 74 ~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~ 153 (653)
++....+.++.+..+...+......++.... |+...++..++......-..+...-..+..
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~--gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~----------------- 221 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTAD--GDMRQALNNLQATHSGFGFVNQENVFKVCD----------------- 221 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHcC-----------------
Q ss_pred HHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHH
Q 048743 154 QLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIII 217 (653)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ 217 (653)
.+....-..++++... ++++.|...+.+|...|..|.......
T Consensus 222 --------------------~~~~~~i~~~i~~~~~-~~~~~a~~~l~~ll~~g~~~~~Il~~l 264 (319)
T PLN03025 222 --------------------QPHPLHVKNIVRNCLK-GKFDDACDGLKQLYDLGYSPTDIITTL 264 (319)
T ss_pred --------------------CCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHHHHH
No 417
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=28.57 E-value=1e+02 Score=16.42 Aligned_cols=25 Identities=24% Similarity=0.120 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 048743 347 MAKLINGYKKHGKNSELSWLLLSIK 371 (653)
Q Consensus 347 ~~~li~~~~~~~~~~~a~~~~~~m~ 371 (653)
|..+-..+...++++.|...|+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344445555555555555555443
No 418
>PRK13342 recombination factor protein RarA; Reviewed
Probab=28.10 E-value=6.8e+02 Score=25.76 Aligned_cols=67 Identities=7% Similarity=-0.123 Sum_probs=44.0
Q ss_pred hHHHHHHHHHh---cCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC-----hhhhHHHHHHhhhcCCCc
Q 048743 179 IFNLVLHACVR---FGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQ-----RDELKKFKCYIDQLSTPF 245 (653)
Q Consensus 179 ~yn~li~~~~~---~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~~ 245 (653)
.+-.++.++.+ .++++.|+..+..|.+.|..|....-..+..++..-|. ...+...++.....+.|.
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe 303 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPE 303 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcH
Confidence 34445555555 58999999999999999988887666666666555543 223444555555555444
No 419
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=27.85 E-value=2.5e+02 Score=23.83 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 048743 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVK 429 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 429 (653)
-..++..+.+.++.-.|.++++++.+.+...+..|--.-++.+...|
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 45566666666555666666666666655554444333344444443
No 420
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=27.81 E-value=1e+02 Score=17.20 Aligned_cols=16 Identities=0% Similarity=-0.151 Sum_probs=7.6
Q ss_pred ChHHHHHHHHHHHhcC
Q 048743 359 KNSELSWLLLSIKKEH 374 (653)
Q Consensus 359 ~~~~a~~~~~~m~~~~ 374 (653)
+.+.|..+|+++....
T Consensus 2 ~~~~~r~i~e~~l~~~ 17 (33)
T smart00386 2 DIERARKIYERALEKF 17 (33)
T ss_pred cHHHHHHHHHHHHHHC
Confidence 3444555555544433
No 421
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.66 E-value=5.1e+02 Score=24.17 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=15.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCc
Q 048743 426 YKVKMFREAEALLKQMRKSCLV 447 (653)
Q Consensus 426 ~~~~~~~~a~~~~~~m~~~~~~ 447 (653)
+..+++.+|..+|++.....+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4457788888888888775443
No 422
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.66 E-value=1.4e+03 Score=29.41 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=59.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHH
Q 048743 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS-LLTAYYK 427 (653)
Q Consensus 349 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~~ 427 (653)
..|......|++..|...|+.+.+.+ ++...+++-++...-..|.++.+.-..+..... ..+....+++ =+.+--+
T Consensus 1454 ~qil~~e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~ 1530 (2382)
T KOG0890|consen 1454 QQILEHEASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWR 1530 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhh
Confidence 44555667899999999999998888 666666887777777778888777766555442 3334444443 2444467
Q ss_pred cCChHHHHHHHH
Q 048743 428 VKMFREAEALLK 439 (653)
Q Consensus 428 ~~~~~~a~~~~~ 439 (653)
.+++|.....+.
T Consensus 1531 l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1531 LSQWDLLESYLS 1542 (2382)
T ss_pred hcchhhhhhhhh
Confidence 777777666654
No 423
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=27.34 E-value=1.6e+02 Score=31.87 Aligned_cols=32 Identities=6% Similarity=0.137 Sum_probs=0.0
Q ss_pred hcCChhhHHHHHHHHHhcCCCccHHHHHHHHH
Q 048743 189 RFGSSLKGQHIMELMSQTGVVADAHSIIILAQ 220 (653)
Q Consensus 189 ~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~ 220 (653)
+.|++.+|.+.+-.+.+..+.|...-...+..
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 34888888888888888878887766555544
No 424
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=27.31 E-value=3.2e+02 Score=21.77 Aligned_cols=83 Identities=17% Similarity=0.082 Sum_probs=55.2
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 048743 356 KHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAE 435 (653)
Q Consensus 356 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 435 (653)
-....++|..+.+.+...+ .....+--+-+..+.+.|+++.| +.. ......||...|.+|- -.+.|..+++.
T Consensus 18 G~HcH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~A---Ll~-~~~~~~pdL~p~~AL~--a~klGL~~~~e 89 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEA---LLL-PQCHCYPDLEPWAALC--AWKLGLASALE 89 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHH---HHH-HTTS--GGGHHHHHHH--HHHCT-HHHHH
T ss_pred hhHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHH---HHh-cccCCCccHHHHHHHH--HHhhccHHHHH
Confidence 3556889999999999887 33334355556778889999999 222 2234568888887654 46889999999
Q ss_pred HHHHHHHHcCC
Q 048743 436 ALLKQMRKSCL 446 (653)
Q Consensus 436 ~~~~~m~~~~~ 446 (653)
..+.++...|-
T Consensus 90 ~~l~rla~~g~ 100 (116)
T PF09477_consen 90 SRLTRLASSGS 100 (116)
T ss_dssp HHHHHHCT-SS
T ss_pred HHHHHHHhCCC
Confidence 98888876653
No 425
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=27.03 E-value=5.3e+02 Score=25.48 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHH
Q 048743 385 DVIDALIQLGFLEAAHDILDDMELA---GHPMDSTTYKS--LLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 385 ~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
.++...-+.++.++|++.++++.+. --.|+.+.|.. +...+...|+..++.+++++..+
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3333334444444454444444321 11233333322 22233344455555555444444
No 426
>PF13934 ELYS: Nuclear pore complex assembly
Probab=26.98 E-value=5.1e+02 Score=23.97 Aligned_cols=116 Identities=10% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHH
Q 048743 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~ 462 (653)
|..+++++....+ ..-.+.++.+.+..+.|+-... ++.++...|+.+.|+.+++...-..-.++.........+
T Consensus 79 ~~~~~~g~W~LD~-~~~~~A~~~L~~ps~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~La--- 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDH-GDFEEALELLSHPSLIPWFPDK--ILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVALA--- 152 (226)
T ss_pred HHHHHHHHHHhCh-HhHHHHHHHhCCCCCCcccHHH--HHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHHHH---
Q ss_pred HhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH----cCCCHHHHHHH
Q 048743 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFC----KGKMIGDALKI 521 (653)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~----~~g~~~~a~~~ 521 (653)
++.+.+|..+-+...+.. ....+..++..+. +.+..++.+++
T Consensus 153 --------------~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 153 --------------NGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred --------------cCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 427
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=26.90 E-value=1.2e+02 Score=29.72 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHhhhhhHHhhhhhHHHHHHHHHhhHhH
Q 048743 588 YFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVNV 643 (653)
Q Consensus 588 ~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (653)
-++.|.++.+.+++.|+.||..||--.+..+-..+.-|+.....+-.....-..+|
T Consensus 281 p~erAekf~k~irkLG~~~dG~sylD~FR~LItqIGNA~gyVRmirsggl~~~~~a 336 (350)
T PF14744_consen 281 PYERAEKFNKGIRKLGLSDDGQSYLDQFRQLITQIGNAMGYVRMIRSGGLHYCSNA 336 (350)
T ss_pred CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHhHHHhcCC
Confidence 37899999999999999999999988887777778878777777766544443333
No 428
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=26.90 E-value=5.7e+02 Score=24.53 Aligned_cols=90 Identities=10% Similarity=-0.011 Sum_probs=57.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CccCchhhHHHHhhHHH
Q 048743 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC---LVQNLSCEMVVSERFSE 462 (653)
Q Consensus 386 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~~~~~l~~ 462 (653)
=|.+++..+++.+++...-..-+.--+........-|-.|.|.+++..+.++-..-.+.. -.|+ +.++.....++-
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~-y~~vaELyLl~V 167 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPE-YGTVAELYLLHV 167 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchh-hHHHHHHHHHHH
Confidence 389999999999988776655433222334555666677999999999988887776531 1122 222322222222
Q ss_pred HhhhcccccccccccCCHHHHHHHH
Q 048743 463 VADKSASFTDTSSLMDKSDLAESLI 487 (653)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~a~~~~ 487 (653)
+ -..|.+++|+++.
T Consensus 168 L-----------lPLG~~~eAeelv 181 (309)
T PF07163_consen 168 L-----------LPLGHFSEAEELV 181 (309)
T ss_pred H-----------hccccHHHHHHHH
Confidence 2 2478899998877
No 429
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=26.74 E-value=2.2e+02 Score=29.21 Aligned_cols=186 Identities=11% Similarity=0.042 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHcC------CccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHH-----HHccCCC
Q 048743 429 KMFREAEALLKQMRKSC------LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEM-----REEAALS 497 (653)
Q Consensus 429 ~~~~~a~~~~~~m~~~~------~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m-----~~~~~~p 497 (653)
+.+++-.++++.+.+.| +.+|. |.+.++++.|.+.+++- ...|-.|
T Consensus 25 ~~~~e~~~~l~~l~~~g~~dvl~ltiDs-----------------------ytr~~~~~~a~~~l~~~~~~~~~~lnG~P 81 (428)
T cd00245 25 PLLEEHIELLRTLQEEGAADVLPLTIDS-----------------------YTRVNDYEEAEEGLEESIKAGKSLLNGFP 81 (428)
T ss_pred CCHHHHHHHHHHHHhcCCCCeecccccc-----------------------chhhhhhHHHHHHHHhhhhcCccccCCCC
Q ss_pred ----CHHHHHHHHHHH-----HcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHH---HHHHHHhh
Q 048743 498 ----TIYKLNSSIYFF-----CKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW---GDIKRNIE 565 (653)
Q Consensus 498 ----~~~~y~~li~~~-----~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~---~~~~~~~~ 565 (653)
.+..+..|+.+. .|+|- ..+..+++-+...|+.-...---+.-.-|.+.-.+++++..| +.+.....
T Consensus 82 ~v~~g~~~~R~l~~~~~~PlqvRhGt-~d~~~l~e~~~a~g~~a~egg~isy~~py~k~~~Le~si~~wqy~~rl~~~y~ 160 (428)
T cd00245 82 IVNHGVKTCRKLLEGVDFPVQVRHGT-PDARLLAEIAIASGFDATEGGPISYNLPYSKNVPLEKSIENWQYCDRLVGFYE 160 (428)
T ss_pred cccccHHHHHHHHHhCCCCEeeccCC-ccHHHHHHHHHHhCcccccccceeeccccCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_pred hCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHhhhhhHHhhhhhHHHHHHHHHhhHh
Q 048743 566 SGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFLKHHKHLYRRLKVSNARTEAQSKRLVN 642 (653)
Q Consensus 566 ~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (653)
+.|+..+..++..+...++--. +..|..+++.+...|...+. -++....++|+.+.......+-+.-.+-+++
T Consensus 161 e~gv~in~E~fg~l~~~l~ppt-la~aiaylea~la~glgV~~---lS~~f~~~~n~~qDIAk~RA~RrL~a~~l~e 233 (428)
T cd00245 161 ENGVPINREPFGPLTGTLVPPS-ILIAIQILEALLAAEQGVKS---ISVGYAQQGNLTQDIAALRALRELAKEYLPK 233 (428)
T ss_pred hcCceecccCCcCcccCcCCcH-HHHHHHHHHHHHHccCCCCE---EEEEeecCCCHHHHHHHHHHHHHHHHHHHHH
No 430
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=26.67 E-value=2.9e+02 Score=21.10 Aligned_cols=58 Identities=12% Similarity=0.097 Sum_probs=33.7
Q ss_pred HcCCCHHHHHHHHHHHHh----cCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhC
Q 048743 510 CKGKMIGDALKIYRRMQE----MKIRPT----VETFYYLVYGHSSLEMYRDITILWGDIKRNIESG 567 (653)
Q Consensus 510 ~~~g~~~~a~~~~~~m~~----~g~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 567 (653)
.+.|++..|.+-+.+..+ .+..+. ......+.......|+.++|...+++..+..++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 457777777666555543 222221 1222234445667788888888888877554443
No 431
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=26.58 E-value=2.9e+02 Score=20.96 Aligned_cols=43 Identities=23% Similarity=0.303 Sum_probs=29.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 401 DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 401 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
++|+-....|+..|+..|.++++.+.-+=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6666666677777777777777766655566666666666654
No 432
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.39 E-value=9.4e+02 Score=26.85 Aligned_cols=156 Identities=15% Similarity=0.064 Sum_probs=84.5
Q ss_pred hhhHHHHHHHHHhccCCch---hHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccch
Q 048743 73 LQKACDLVLKIQKGKADLL---QLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLAS 149 (653)
Q Consensus 73 ~~~a~~~~~~~~~~~~~~~---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~ 149 (653)
.++|+++.+.. .+..| -.......|..+.-.|++++|-.+.-.|.... ..-|.
T Consensus 372 yeeAl~~~k~~---~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~----~~eWe----------------- 427 (846)
T KOG2066|consen 372 YEEALDAAKAS---IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNN----AAEWE----------------- 427 (846)
T ss_pred HHHHHHHHHhc---cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcch----HHHHH-----------------
Confidence 67888887654 23333 34566777888888999999988888886531 11222
Q ss_pred HHHHHHHHHhhhhhhhhcCCccCC-CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCh
Q 048743 150 NFLIQLCDVFLHLSAEKSNGAELI-KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQR 228 (653)
Q Consensus 150 ~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 228 (653)
..+..+...++....-.+.-.+. +.+...|..+|..|.. .....+++...+. +...|..+--.-
T Consensus 428 -~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~~W----p~~Lys~l~iis------ 492 (846)
T KOG2066|consen 428 -LWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIKEW----PGHLYSVLTIIS------ 492 (846)
T ss_pred -HHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHHhC----ChhhhhhhHHHh------
Confidence 22223333333322222222222 2466789999988887 2333333333332 223333222111
Q ss_pred hhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHh
Q 048743 229 DELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDM 276 (653)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 276 (653)
.+..++.+...+ ..+-..|...|...++++.|++++-..
T Consensus 493 ----a~~~q~~q~Se~-----~~L~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 493 ----ATEPQIKQNSES-----TALLEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred ----hcchHHHhhccc-----hhHHHHHHHHHHHccChHHHHHHHHhc
Confidence 111222222111 123455888888999999999888777
No 433
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.23 E-value=2.7e+02 Score=22.90 Aligned_cols=42 Identities=7% Similarity=0.040 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 048743 517 DALKIYRRMQEMKIRPT-VETFYYLVYGHSSLEMYRDITILWG 558 (653)
Q Consensus 517 ~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~ 558 (653)
.+.++|+.|...|+--. +.-|......+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555444333 2234444444555555555555553
No 434
>COG5210 GTPase-activating protein [General function prediction only]
Probab=26.03 E-value=6.1e+02 Score=26.91 Aligned_cols=123 Identities=12% Similarity=0.149 Sum_probs=72.6
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHH
Q 048743 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS----LEMYRDITILWG 558 (653)
Q Consensus 483 a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~ 558 (653)
.-+++..|...|+.+...++..++..+.+....+.|+.+++.+--.|..-....+.+++..... ...-..-..++.
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 440 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDELLDLLLK 440 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhccCchhHHHHHHH
Confidence 3456777888888888888888999888899999999999888877765444444433332211 111111111111
Q ss_pred HHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 048743 559 DIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEFL 616 (653)
Q Consensus 559 ~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~ 616 (653)
... ..+....+ .-....+.+...+.......+.+.++.|+. |...+.
T Consensus 441 ~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~i~p~~--~~~~~~ 487 (496)
T COG5210 441 QLF-------LHSGKEAW--SSILKFRHGTDRDILLFIEDLLKKDITPTR--YRSELR 487 (496)
T ss_pred hhh-------hhhhhhhh--hhhHHhhhhhhhhHHHHHHhhhhcccCchh--hhHHHH
Confidence 110 01111111 122334566666777888888888898887 555553
No 435
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=25.88 E-value=1.5e+02 Score=21.63 Aligned_cols=39 Identities=15% Similarity=0.059 Sum_probs=29.5
Q ss_pred HhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 048743 188 VRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNC 226 (653)
Q Consensus 188 ~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 226 (653)
.-.|+.+.+.+++++..+.|..|.......+..+..+-|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 457999999999999998898888777666666655443
No 436
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=25.88 E-value=3.3e+02 Score=28.84 Aligned_cols=103 Identities=11% Similarity=0.076 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc-C---HHH
Q 048743 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVE---TFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV-S---RDL 575 (653)
Q Consensus 503 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p-~---~~~ 575 (653)
..++.-|.+.+++++|..++..|-=.-. ... +.+.+++.+.+..--++.+..++.+....-. -.+| . ..-
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~--g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~a-p~rpl~~~~~~e 488 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTM--GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYA-PTRPLSDATVLE 488 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCcccc--HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccC-CCcCccHHHHHH
Confidence 4577788999999999999988863211 222 3444555555654334444444444311100 0111 0 001
Q ss_pred H--------HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH
Q 048743 576 Y--------ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDK 608 (653)
Q Consensus 576 y--------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 608 (653)
| ..+...+.|.+++++|..+--++-..++-.|.
T Consensus 489 y~d~V~~~aRRfFhhLLR~~rfekAFlLAvdi~~~DLFmdl 529 (545)
T PF11768_consen 489 YRDPVSDLARRFFHHLLRYQRFEKAFLLAVDIGDRDLFMDL 529 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccchHHHHHH
Confidence 1 23455566788888888887777655544443
No 437
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=25.81 E-value=5.3e+02 Score=27.43 Aligned_cols=35 Identities=6% Similarity=0.076 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHH
Q 048743 178 MIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAH 213 (653)
Q Consensus 178 ~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 213 (653)
...-.|+++.. .|+...|+.+++++...|..|...
T Consensus 259 ~~if~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~~~ 293 (507)
T PRK06645 259 SVIIEFVEYII-HRETEKAINLINKLYGSSVNLEIF 293 (507)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 33444555544 499999999999999999877654
No 438
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=25.74 E-value=5.6e+02 Score=24.17 Aligned_cols=115 Identities=11% Similarity=0.059 Sum_probs=64.6
Q ss_pred cchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCC----CCchhHHHHHHHhhccCCcchhhhHHHHHHHHH---hccC
Q 048743 16 GSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGI----PERHVVNRFITDLCYSAEPHWLQKACDLVLKIQ---KGKA 88 (653)
Q Consensus 16 ~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~---~~~~ 88 (653)
-|-......++...-+....++...+++.+...... ++....+.++.+++..|. +.+..+..++++.. +.-
T Consensus 8 ~P~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~GS-kS~SH~~~~lery~~~Lk~l- 85 (253)
T PF09090_consen 8 LPFHALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIGS-KSFSHVLSALERYKEVLKEL- 85 (253)
T ss_dssp STTHHHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHTT-TSHHHHHHHHHHTHHHHHHH-
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHh-
Confidence 455556666666666666677777777776653221 234577889999998885 23455555544432 111
Q ss_pred CchhHHHHHHHHHHHHh--cCCCchHHHHHHHHHcCccCCCchhHH
Q 048743 89 DLLQLDLLAKLSLSLAR--AQMPVPASMILRLMLGRENLPCSDLLL 132 (653)
Q Consensus 89 ~~~~~~t~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~~~~ 132 (653)
...+...-..+|.+..+ ..++..+.-+++.|...|+-......+
T Consensus 86 ~~~~~~~q~~il~~v~~~W~~~~q~~~li~dkll~~~ii~~~~Vv~ 131 (253)
T PF09090_consen 86 EAESEEAQFWILDAVFRFWKNNPQMGFLIIDKLLNYGIISPSAVVN 131 (253)
T ss_dssp -TSSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-HHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHhcCCceehHHHHHHHhcCCCCHHHHHH
Confidence 12344444555655555 577889999999999998654444333
No 439
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=25.71 E-value=3.4e+02 Score=21.53 Aligned_cols=36 Identities=14% Similarity=-0.003 Sum_probs=22.9
Q ss_pred CChhhHHHHHHHHH--hcCCCccHHHHHHHHHHHHhcC
Q 048743 191 GSSLKGQHIMELMS--QTGVVADAHSIIILAQIHEMNC 226 (653)
Q Consensus 191 g~~~~a~~l~~~m~--~~g~~p~~~t~~~ll~~~~~~g 226 (653)
|+++.....+-.+. ..|..+|...+...+.++...|
T Consensus 61 Ge~~~i~~alLkq~~~~~~~~~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 61 GEYGDIYLALLKQRCVADGPELDDESLAKALNLHVHRG 98 (105)
T ss_pred CchHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 77766655554433 4567778777777777665544
No 440
>PRK09857 putative transposase; Provisional
Probab=25.59 E-value=5.1e+02 Score=25.18 Aligned_cols=66 Identities=8% Similarity=-0.026 Sum_probs=43.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 048743 537 FYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVD 607 (653)
Q Consensus 537 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 607 (653)
+..+++-....++.++..++++.+.+. .........++.+-+...|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-----~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-----SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-----CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 455555555667776667777666422 222333444566777777877888899999999998776
No 441
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=25.50 E-value=1.1e+03 Score=27.15 Aligned_cols=28 Identities=11% Similarity=0.018 Sum_probs=16.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCc
Q 048743 182 LVLHACVRFGSSLKGQHIMELMSQTGVVA 210 (653)
Q Consensus 182 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p 210 (653)
.++++.. .++...++.+++++.+.|..|
T Consensus 253 ~lidAL~-~~D~a~al~~l~~Li~~G~dp 280 (824)
T PRK07764 253 EAVDALA-AGDGAALFGTVDRVIEAGHDP 280 (824)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 3444443 456666666667666666544
No 442
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.44 E-value=4.1e+02 Score=23.19 Aligned_cols=58 Identities=9% Similarity=0.001 Sum_probs=39.2
Q ss_pred hccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhccc
Q 048743 85 KGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEI 143 (653)
Q Consensus 85 ~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 143 (653)
+..|..++. .-..++..+.....+-.|.++++.+.+.+..++..|--..|..+...|.
T Consensus 18 ~~~GlR~T~-qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLTP-QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCCH-HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 334443333 3335566666677788999999999999877777775555576666653
No 443
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.94 E-value=2e+02 Score=23.02 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=36.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhh
Q 048743 182 LVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDE 230 (653)
Q Consensus 182 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 230 (653)
.+++.+...+..-.|.++++.+.+.+..++..|.=-.|+.+.+.|-+..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 4567777777888999999999998877788885555666666665443
No 444
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.76 E-value=1.9e+02 Score=23.05 Aligned_cols=46 Identities=7% Similarity=-0.023 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhccc
Q 048743 98 KLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEI 143 (653)
Q Consensus 98 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 143 (653)
.++..+...+.+-.|.++++.+.+.+..++..|.-..|..+...|.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3556666667778899999999888777777775555566666653
No 445
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.40 E-value=1.1e+03 Score=26.85 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 048743 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 440 (653)
+.+....+...|+.+.+..+-.-|.+ |..++.-++..+.+++|++++..
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555566666666555444433 45666677777777777776654
No 446
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=24.11 E-value=3.3e+02 Score=20.76 Aligned_cols=66 Identities=14% Similarity=-0.017 Sum_probs=35.8
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 048743 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDIT 554 (653)
Q Consensus 483 a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~ 554 (653)
+.++++.+.++|+. +..-.+.+-.+-...|+.+.|.+++.... .| |+ .|..++.++...|..+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhhh
Confidence 44566666666642 22222222222235577777777777766 32 33 4566677776666655443
No 447
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=24.07 E-value=6.3e+02 Score=24.01 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=12.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHH
Q 048743 182 LVLHACVRFGSSLKGQHIMELMS 204 (653)
Q Consensus 182 ~li~~~~~~g~~~~a~~l~~~m~ 204 (653)
.|+..|.+.|+++.|-.++--+.
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~ 206 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQ 206 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH
Confidence 44555555666655555554444
No 448
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.97 E-value=1.7e+03 Score=28.91 Aligned_cols=85 Identities=9% Similarity=0.047 Sum_probs=58.5
Q ss_pred HHHHHHHhcCChhhHHHHHHH----HHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHH-hhhcCCCcccchhHHHHHH
Q 048743 182 LVLHACVRFGSSLKGQHIMEL----MSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCY-IDQLSTPFAHHYQQFYESL 256 (653)
Q Consensus 182 ~li~~~~~~g~~~~a~~l~~~----m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~l 256 (653)
.|-.+-.+.+.+..|+-.++. +++.. -...-|-.+...|+.-+++|...-+... ... |. ...-
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~---~s-------l~~q 1455 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFAD---PS-------LYQQ 1455 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC---cc-------HHHH
Confidence 445566778889999988887 44332 1223345556699999999998887764 222 11 3455
Q ss_pred HHhhhccCCHHHHHHHHHHhcc
Q 048743 257 LSLHFKFDDIDAAGELILDMNR 278 (653)
Q Consensus 257 i~~~~~~g~~~~A~~~~~~m~~ 278 (653)
|-.+...|++..|...|+++.+
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q 1477 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQ 1477 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhc
Confidence 5666778999999999999943
No 449
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=23.84 E-value=1e+03 Score=26.44 Aligned_cols=221 Identities=10% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccc
Q 048743 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKM---FREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSL 476 (653)
Q Consensus 400 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 476 (653)
.++-+.+....+....+.-..+++-..+..+ -++-..++.+|++.--.|+.-..-+....+..+-+
T Consensus 145 ~R~kq~Lk~vq~~ssah~REkflsD~RkAR~~y~G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRD----------- 213 (1226)
T KOG4279|consen 145 HRMKQVLKSVQVESSAHSREKFLSDLRKAREIYDGDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRD----------- 213 (1226)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhcc-----------
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHH----------HHHHHHHHHHcCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHH--
Q 048743 477 MDKSDLAESLIQEMREEAALSTIY----------KLNSSIYFFCKGKMIGDALKIYRRMQE--MKIRPTVETFYYLVY-- 542 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~~~p~~~----------~y~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~li~-- 542 (653)
..+++...++.+.+... ||+. .|.-.+.---+-|+-++|++..-.|.+ -.+.||....---|.
T Consensus 214 vQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKD 290 (1226)
T KOG4279|consen 214 VQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKD 290 (1226)
T ss_pred ccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhh
Q ss_pred -----HHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHhCCCCCCHH
Q 048743 543 -----GHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGY--------FERVMEVIGYMKKQNMYVDKL 609 (653)
Q Consensus 543 -----~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~--------~~~a~~~~~~m~~~g~~p~~~ 609 (653)
.|...+..+.|.+.|+... .+.|+...=-.+...+..+|. -.-++.+=.-+-++|.--...
T Consensus 291 mF~~S~ytDa~s~~~a~~WyrkaF------eveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq 364 (1226)
T KOG4279|consen 291 MFIASNYTDAESLNHAIEWYRKAF------EVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQ 364 (1226)
T ss_pred hhhccCCcchhhHHHHHHHHHHHh------ccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHH
Q ss_pred hHHHHH-----HHhhhhhHHhhhhhHHHHHHHHHhh
Q 048743 610 MYKSEF-----LKHHKHLYRRLKVSNARTEAQSKRL 640 (653)
Q Consensus 610 t~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (653)
.|=-+. ..+.+|..++..++++|++....-|
T Consensus 365 ~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 365 EYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCcee
No 450
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.59 E-value=8.8e+02 Score=25.55 Aligned_cols=133 Identities=8% Similarity=-0.043 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHH
Q 048743 74 QKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLI 153 (653)
Q Consensus 74 ~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~ 153 (653)
++....+.+..+..+...+......++... .|+...++..++.+....-.. .|...+-.
T Consensus 179 ~el~~~L~~i~~~egi~i~~eal~~Ia~~s--~GdlR~aln~Le~l~~~~~~~--It~e~V~~----------------- 237 (472)
T PRK14962 179 ELIIKRLQEVAEAEGIEIDREALSFIAKRA--SGGLRDALTMLEQVWKFSEGK--ITLETVHE----------------- 237 (472)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCC--CCHHHHHH-----------------
Q ss_pred HHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChh----
Q 048743 154 QLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRD---- 229 (653)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~---- 229 (653)
-...........++++... ++++.|+.++.+|...|..|....-..+..++-.-|.-+
T Consensus 238 -----------------~l~~~~~~~i~~li~si~~-~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~ 299 (472)
T PRK14962 238 -----------------ALGLIPIEVVRDYINAIFN-GDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDI 299 (472)
T ss_pred -----------------HHcCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHH
Q ss_pred --hhHHHHHHhhhcCCCc
Q 048743 230 --ELKKFKCYIDQLSTPF 245 (653)
Q Consensus 230 --~a~~~~~~~~~~~~~~ 245 (653)
.+..+++.....+-|.
T Consensus 300 ~~~~~~~~~~~~~i~~~e 317 (472)
T PRK14962 300 IQVSRQLLNILREIKFAE 317 (472)
T ss_pred HHHHHHHHHHHHHhCCcc
No 451
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=23.47 E-value=1.1e+03 Score=26.74 Aligned_cols=53 Identities=17% Similarity=-0.005 Sum_probs=36.9
Q ss_pred hcCChHHHHHHHHHHHhcC---CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048743 356 KHGKNSELSWLLLSIKKEH---HSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408 (653)
Q Consensus 356 ~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 408 (653)
..|++++|.++-+.....- -..+....+..+..+..-.|++++|..+..+-.+
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 5688899888877765433 1233344467777777788999999888776644
No 452
>PRK13342 recombination factor protein RarA; Reviewed
Probab=23.35 E-value=8.3e+02 Score=25.13 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 048743 512 GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548 (653)
Q Consensus 512 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 548 (653)
.++.+.|+.++..|.+.|..|....-..++.++...|
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 4677778888888887777777665555555555554
No 453
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=23.33 E-value=6.1e+02 Score=23.64 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 048743 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL 547 (653)
Q Consensus 497 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 547 (653)
|.......++..|. .+++++|.+++.+.-+.|+.|.-. .+.+.+++-..
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K~~ 285 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVVKNM 285 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHhc
Confidence 66666677777655 677999999999999999888644 34555554443
No 454
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=23.18 E-value=84 Score=22.14 Aligned_cols=25 Identities=12% Similarity=-0.112 Sum_probs=20.5
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcc
Q 048743 357 HGKNSELSWLLLSIKKEHHSFGEST 381 (653)
Q Consensus 357 ~~~~~~a~~~~~~m~~~~~~~~~~~ 381 (653)
.-+++.|...|.++...+.+|++.+
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 5578999999999999887777643
No 455
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=23.15 E-value=5.6e+02 Score=23.14 Aligned_cols=46 Identities=22% Similarity=0.186 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH-HHHHHHHHHh
Q 048743 178 MIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS-IIILAQIHEM 224 (653)
Q Consensus 178 ~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~ 224 (653)
..-+.++..|.-.||++.|-+.|.-+.+.. ..|..+ |..=+..+.+
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~ 88 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMR 88 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHc
Confidence 346677788888888888888888888653 334433 4443333333
No 456
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.88 E-value=6.3e+02 Score=23.60 Aligned_cols=85 Identities=8% Similarity=0.070 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHH---HHhCCCHHHHHHHHHHHHhCCCCCCHHhH-------HHHHHH
Q 048743 548 EMYRDITILWGDIKRNIESGVLAVSRDLYETLLLN---FLQGGYFERVMEVIGYMKKQNMYVDKLMY-------KSEFLK 617 (653)
Q Consensus 548 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~---~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-------~~l~~~ 617 (653)
.+++.|+..++..-...+.... +...-.+++.+ -...+++.+|+++|++.-...+..+..-| ...+|.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees--~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLCh 205 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEES--VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCH 205 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHh
Confidence 4556666666554333222211 12222233333 34568889999999988766554444333 334577
Q ss_pred hh-hhhHHhhhhhHHHHH
Q 048743 618 HH-KHLYRRLKVSNARTE 634 (653)
Q Consensus 618 ~~-~~~~~~~~~~~~~~~ 634 (653)
+. .|.--+.++.++-.+
T Consensus 206 l~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 206 LCKADEVNAQRALEKYQE 223 (288)
T ss_pred HhcccHHHHHHHHHHHHh
Confidence 77 565555555555544
No 457
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=22.52 E-value=7.4e+02 Score=24.29 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=28.4
Q ss_pred HhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 544 HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 544 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
-.+.|+..+|.+.|+.+.+ +..+..-...-..+|.++....-+.++..++-+.-
T Consensus 285 ARklGrlrEA~K~~RDL~k---e~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 285 ARKLGRLREAVKIMRDLMK---EFPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHhhhHHHHHHHHHHHhh---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456777777777766642 22111111223346666666665555555555444
No 458
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=22.41 E-value=6.2e+02 Score=23.32 Aligned_cols=84 Identities=13% Similarity=0.011 Sum_probs=50.3
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 048743 358 GKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEAL 437 (653)
Q Consensus 358 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 437 (653)
|-+.-|.-=|.+...-. |.-+.+||-|---+...|+++.|.+.|+...+-...-+-...|.-| ++.-.|++..|.+-
T Consensus 79 GL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHH
Confidence 33444444444443333 4445568888888888999999999999887753322222233323 23345788888776
Q ss_pred HHHHHHc
Q 048743 438 LKQMRKS 444 (653)
Q Consensus 438 ~~~m~~~ 444 (653)
|-..-+.
T Consensus 156 ~~~fYQ~ 162 (297)
T COG4785 156 LLAFYQD 162 (297)
T ss_pred HHHHHhc
Confidence 6665553
No 459
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=22.41 E-value=1.1e+03 Score=26.27 Aligned_cols=33 Identities=12% Similarity=0.019 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH
Q 048743 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDK 608 (653)
Q Consensus 575 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 608 (653)
....++.++.. ++...++.++++|.+.|+.+..
T Consensus 248 ~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 248 YLYELLTGIIN-QDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHH
Confidence 34446655554 8888999999999988886654
No 460
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=21.81 E-value=5e+02 Score=25.23 Aligned_cols=60 Identities=15% Similarity=0.284 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 048743 482 LAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS 546 (653)
Q Consensus 482 ~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 546 (653)
.-.++++.|.+.++.|.-++|.-+--.+.+.=.+..++.+|..+... ..-|..|+..||.
T Consensus 261 ~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 261 HDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred hhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 34678999999999998888877777778888899999999998863 3338888888875
No 461
>PHA03100 ankyrin repeat protein; Provisional
Probab=21.75 E-value=9.3e+02 Score=25.15 Aligned_cols=58 Identities=7% Similarity=0.041 Sum_probs=27.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC
Q 048743 386 VIDALIQLGFLEAAHDILDDMELAGHPMDST--------TYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN 449 (653)
Q Consensus 386 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 449 (653)
-+...+..|+.+-+.- +.+.|..|+.. .+.+.+...+..|. ...++++.+.+.|..++
T Consensus 179 pL~~A~~~~~~~iv~~----Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din 244 (480)
T PHA03100 179 PLHIAVEKGNIDVIKF----LLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPIN 244 (480)
T ss_pred HHHHHHHhCCHHHHHH----HHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCC
Confidence 3455556666554444 44455544422 11333444455555 11234445555666554
No 462
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=21.72 E-value=2.3e+02 Score=22.91 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhh
Q 048743 180 FNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDE 230 (653)
Q Consensus 180 yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 230 (653)
-..++..+...+.+-.|.++++.|.+.|...+..|.=--|..+.+.|-+..
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 346778888888899999999999998888888874444555666665444
No 463
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.61 E-value=1.9e+02 Score=21.42 Aligned_cols=44 Identities=16% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcc
Q 048743 98 KLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTE 142 (653)
Q Consensus 98 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 142 (653)
+++..+.+....++|+++++-|.++| ..+....+.|=..++..|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L~~~~~~kg 79 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKALRVTLVHKG 79 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHhhHHHHH
No 464
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=20.96 E-value=1.2e+03 Score=26.20 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=22.4
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 048743 511 KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548 (653)
Q Consensus 511 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 548 (653)
+.++++.|+.++.+|.+.|..|....-..++.+....|
T Consensus 270 rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 270 RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 35667777777777777666665554444444444444
No 465
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=20.85 E-value=1.7e+02 Score=21.40 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=22.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 048743 393 LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVK 429 (653)
Q Consensus 393 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 429 (653)
.|+.+.+.+++++..+.|.+|.......+.-+..+.|
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4666667777777766666666665555555554444
No 466
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=20.84 E-value=1.2e+03 Score=26.26 Aligned_cols=45 Identities=7% Similarity=-0.044 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH--HHHHHHHHHhcCCh
Q 048743 181 NLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS--IIILAQIHEMNCQR 228 (653)
Q Consensus 181 n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~ 228 (653)
-.++-.+.|+|+.+.|.++.++-+.. |+..+ +.....++.+.-+.
T Consensus 329 W~~vyy~lR~G~lk~A~~~l~e~~~~---~~~l~~~f~~y~~A~~~~~~~ 375 (835)
T KOG2168|consen 329 WPLVYYLLRCGDLKAASQFLNENKDF---FEKLAELFPTYFNAYAKNLSS 375 (835)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHhhhh---HHHHHHHHHHHHHhhhcCCCc
Confidence 35677789999999999999887753 33333 33336666655333
No 467
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=20.68 E-value=6.1e+02 Score=22.62 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHCCCCCC--HHHHH-----HHHHHHHHcCChHHHHHHHHHHHHc
Q 048743 396 LEAAHDILDDMELAGHPMD--STTYK-----SLLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 396 ~~~a~~~~~~m~~~g~~p~--~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
++.|+.+|+.+.+.--.|. ..... ..+-.|.+.|.+++|.++++.....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 5689999988876543331 12222 2345789999999999999999873
No 468
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=20.53 E-value=1.1e+03 Score=25.70 Aligned_cols=180 Identities=12% Similarity=-0.014 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHH-hccchhHHHHHHHHhhhhcCCCCch-----hHHHHHHHhhccCCcchhhhHHHHHHHHHhcc---C
Q 048743 18 SREVLLRKLESAS-KNHQVGEAWETFNDFQRLHGIPERH-----VVNRFITDLCYSAEPHWLQKACDLVLKIQKGK---A 88 (653)
Q Consensus 18 ~~~~~~~~i~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~---~ 88 (653)
...+..++...|. ...+.+.|...++........++-. +-..++..+.+.+. ..|...+.+..+.- +
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~----~~a~~~l~~~I~~~~~~~ 133 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP----KAALKNLDKAIEDSETYG 133 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHhccC
Confidence 4445666666666 5689999999999765433232221 22445555555544 22777777654432 2
Q ss_pred CchhHHHHHHH-HHHHHhcCCCchHHHHHHHHHcCc---cCCCchhHHHHHHHHhhcccccc-cchHHHHHHHHHhhhhh
Q 048743 89 DLLQLDLLAKL-SLSLARAQMPVPASMILRLMLGRE---NLPCSDLLLLVFVHMVKTEIGTC-LASNFLIQLCDVFLHLS 163 (653)
Q Consensus 89 ~~~~~~t~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 163 (653)
..+=...+..+ +..+...+++..|++.++.+...- ..|-..++-.++.+++......+ .....+-.+......+
T Consensus 134 ~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~- 212 (608)
T PF10345_consen 134 HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL- 212 (608)
T ss_pred chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc-
Confidence 22223334444 333334479999999998887643 34555556556665554333211 1111111111111111
Q ss_pred hhhcCCccCCCCchhhHHHHHHHHH--hcCChhhHHHHHHHHHh
Q 048743 164 AEKSNGAELIKPDTMIFNLVLHACV--RFGSSLKGQHIMELMSQ 205 (653)
Q Consensus 164 ~a~~~~~~~~~~~~~~yn~li~~~~--~~g~~~~a~~l~~~m~~ 205 (653)
+.=+....|-..+|..+++.++ ..|++..+.+.++++.+
T Consensus 213 ---q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 213 ---QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred ---ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111223566778888887665 47777777777766664
No 469
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=20.41 E-value=2.3e+02 Score=22.92 Aligned_cols=49 Identities=6% Similarity=-0.066 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhccc
Q 048743 95 LLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEI 143 (653)
Q Consensus 95 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 143 (653)
.-..++..+...+.+-.|.++++.|.+.|...+..|.-..|..+.+.|.
T Consensus 9 ~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 9 QRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4456777778888899999999999998878777765555566666553
No 470
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=20.40 E-value=9.1e+02 Score=24.52 Aligned_cols=121 Identities=17% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHc--CChHHHHHHHHHHHHcCCc-cCchhhHHHHhhHH
Q 048743 387 IDALIQLGFLEAAHDILDDMELAGHPMDST--TYKSLLTAYYKV--KMFREAEALLKQMRKSCLV-QNLSCEMVVSERFS 461 (653)
Q Consensus 387 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~-p~~~~~~~~~~~l~ 461 (653)
...+.+.+++..|.++|+.+.+. ++++.. .|..+..+|..- -++++|.+.|+........ +.....+...
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~---- 212 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKEL---- 212 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHH----
Q ss_pred HHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH------cCCCHHHHHHHHHHHHh
Q 048743 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFC------KGKMIGDALKIYRRMQE 527 (653)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~------~~g~~~~a~~~~~~m~~ 527 (653)
.+-+.....+........-.+...++..+.+-+. ..|+++.|.-.+-+..+
T Consensus 213 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 213 ---------------VEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred ---------------HHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
No 471
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.33 E-value=7.5e+02 Score=23.51 Aligned_cols=180 Identities=11% Similarity=0.097 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc---C-CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH----HC-CCCCC
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKE---H-HSFGESTLCSDVIDALIQLGFLEAAHDILDDME----LA-GHPMD 414 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~-g~~p~ 414 (653)
-.....+|....+.+++++....+.+|..- . ....+..+.|.+++--..+.+.+.-.++++.-. +. +-+..
T Consensus 65 FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLW 144 (440)
T KOG1464|consen 65 FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLW 144 (440)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceee
Confidence 345567888999999999998888876531 1 011223347888887777776665555544322 21 11222
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHH-Hc
Q 048743 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR-EE 493 (653)
Q Consensus 415 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~-~~ 493 (653)
-.|-+-|-..|...+++.+...+++++.+..-.-|..-..--..-++.. ...-+.+|....+-..-..+++... -.
T Consensus 145 FKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi---YAlEIQmYT~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 145 FKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI---YALEIQMYTEQKNNKKLKALYEQALHIK 221 (440)
T ss_pred eeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh---HhhHhhhhhhhcccHHHHHHHHHHHHhh
Confidence 2344456667777788888888888887653222211000000000000 0011244555666666666666544 23
Q ss_pred cCCCCHHHHHHHHHHH-----HcCCCHHHHH-HHHHHHHh
Q 048743 494 AALSTIYKLNSSIYFF-----CKGKMIGDAL-KIYRRMQE 527 (653)
Q Consensus 494 ~~~p~~~~y~~li~~~-----~~~g~~~~a~-~~~~~m~~ 527 (653)
...|.+.+. ..|+-| .+.|++++|. ++|+..+.
T Consensus 222 SAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 222 SAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred ccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 333544433 344444 3566777765 45555553
No 472
>PRK09687 putative lyase; Provisional
Probab=20.16 E-value=7.8e+02 Score=23.67 Aligned_cols=18 Identities=11% Similarity=-0.178 Sum_probs=8.0
Q ss_pred CCchhHHHHHHHhhccCC
Q 048743 52 PERHVVNRFITDLCYSAE 69 (653)
Q Consensus 52 ~~~~~~~~ll~~~~~~~~ 69 (653)
++..+....+.++...|.
T Consensus 35 ~d~~vR~~A~~aL~~~~~ 52 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG 52 (280)
T ss_pred CCHHHHHHHHHHHHhcCc
Confidence 344444444444444443
Done!