Query 048743
Match_columns 653
No_of_seqs 378 out of 2874
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 22:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.2E-33 4E-38 306.9 44.0 469 54-635 84-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.5E-33 8.4E-38 304.4 38.2 477 17-610 82-585 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.7E-31 5.7E-36 277.7 20.9 214 361-618 7-220 (501)
4 4g26_A Pentatricopeptide repea 100.0 9.4E-30 3.2E-34 264.6 25.3 188 252-548 28-224 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 8.5E-22 2.9E-26 201.2 44.3 377 26-586 6-386 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 4E-21 1.4E-25 196.2 43.0 356 73-608 15-372 (388)
7 2gw1_A Mitochondrial precursor 99.9 3.5E-18 1.2E-22 181.2 42.5 417 18-561 5-476 (514)
8 2y4t_A DNAJ homolog subfamily 99.8 9.8E-18 3.3E-22 174.7 38.2 313 174-561 23-356 (450)
9 2y4t_A DNAJ homolog subfamily 99.8 3.2E-17 1.1E-21 170.7 39.6 325 10-450 17-362 (450)
10 2gw1_A Mitochondrial precursor 99.8 2.5E-17 8.4E-22 174.7 38.0 420 56-611 8-485 (514)
11 3fp2_A TPR repeat-containing p 99.8 6E-16 2E-20 165.1 43.2 441 18-602 24-491 (537)
12 3ieg_A DNAJ homolog subfamily 99.8 1.9E-14 6.5E-19 144.5 42.6 324 176-615 2-346 (359)
13 3fp2_A TPR repeat-containing p 99.7 1.9E-14 6.5E-19 153.4 41.5 435 92-634 24-490 (537)
14 3spa_A Mtrpol, DNA-directed RN 99.7 2.4E-18 8.3E-23 183.2 10.3 104 345-448 128-234 (1134)
15 3spa_A Mtrpol, DNA-directed RN 99.7 3.8E-18 1.3E-22 181.7 11.1 114 498-615 126-243 (1134)
16 3ieg_A DNAJ homolog subfamily 99.7 1.3E-13 4.5E-18 138.3 36.7 308 92-528 2-335 (359)
17 3hym_B Cell division cycle pro 99.7 7E-14 2.4E-18 138.6 32.6 300 173-589 18-321 (330)
18 3hym_B Cell division cycle pro 99.7 3.8E-14 1.3E-18 140.5 29.8 308 10-432 13-322 (330)
19 1b89_A Protein (clathrin heavy 99.7 3.5E-15 1.2E-19 147.7 21.7 250 31-439 15-264 (449)
20 1fch_A Peroxisomal targeting s 99.6 1.9E-14 6.5E-19 145.3 24.4 236 343-597 97-354 (368)
21 2xm6_A Protein corresponding t 99.6 1.6E-11 5.5E-16 128.9 46.2 404 74-636 24-468 (490)
22 1xi4_A Clathrin heavy chain; a 99.6 2.1E-11 7E-16 134.8 46.8 384 15-554 981-1375(1630)
23 4eqf_A PEX5-related protein; a 99.6 5.4E-14 1.9E-18 141.8 24.8 279 171-557 59-350 (365)
24 1b89_A Protein (clathrin heavy 99.6 4.3E-15 1.5E-19 147.1 16.0 283 157-556 14-304 (449)
25 1fch_A Peroxisomal targeting s 99.6 5.9E-14 2E-18 141.6 25.0 282 175-559 62-355 (368)
26 2ooe_A Cleavage stimulation fa 99.6 2.4E-11 8.2E-16 129.0 45.4 219 361-601 255-491 (530)
27 4eqf_A PEX5-related protein; a 99.6 6.3E-14 2.2E-18 141.3 22.7 234 344-598 99-352 (365)
28 3cv0_A Peroxisome targeting si 99.6 2.2E-13 7.4E-18 134.8 24.4 280 175-559 19-311 (327)
29 2ooe_A Cleavage stimulation fa 99.6 3.5E-11 1.2E-15 127.7 43.1 422 14-563 8-492 (530)
30 3mkr_A Coatomer subunit epsilo 99.6 9.7E-13 3.3E-17 127.4 28.3 199 342-561 63-262 (291)
31 3mkr_A Coatomer subunit epsilo 99.6 6.9E-13 2.4E-17 128.5 25.3 215 161-450 49-268 (291)
32 3cv0_A Peroxisome targeting si 99.6 9.4E-13 3.2E-17 130.2 25.9 234 345-599 56-312 (327)
33 2xm6_A Protein corresponding t 99.5 3.1E-10 1.1E-14 119.1 43.6 46 73-122 59-108 (490)
34 1xi4_A Clathrin heavy chain; a 99.5 5E-10 1.7E-14 124.0 43.0 322 174-600 984-1307(1630)
35 4g1t_A Interferon-induced prot 99.4 1.3E-10 4.6E-15 121.3 32.8 276 54-444 51-363 (472)
36 4g1t_A Interferon-induced prot 99.4 3.9E-11 1.3E-15 125.4 28.6 373 18-536 50-468 (472)
37 3uq3_A Heat shock protein STI1 99.4 2.9E-11 1E-15 114.8 24.8 224 345-602 6-236 (258)
38 3uq3_A Heat shock protein STI1 99.4 2.3E-11 8E-16 115.5 22.9 194 177-443 5-201 (258)
39 2pl2_A Hypothetical conserved 99.4 2.4E-11 8.3E-16 112.1 22.2 198 342-599 3-211 (217)
40 2ho1_A Type 4 fimbrial biogene 99.4 1.3E-10 4.3E-15 110.1 25.8 202 344-602 37-238 (252)
41 2vq2_A PILW, putative fimbrial 99.4 2.5E-10 8.6E-15 105.7 25.7 210 344-612 8-219 (225)
42 2ho1_A Type 4 fimbrial biogene 99.3 3.1E-10 1.1E-14 107.4 24.4 201 177-444 37-238 (252)
43 1xnf_A Lipoprotein NLPI; TPR, 99.3 3.9E-10 1.3E-14 108.2 24.7 197 344-602 43-244 (275)
44 1xnf_A Lipoprotein NLPI; TPR, 99.3 9.1E-11 3.1E-15 112.6 19.9 191 343-557 76-269 (275)
45 2vq2_A PILW, putative fimbrial 99.3 5.7E-10 1.9E-14 103.3 24.6 209 174-450 5-215 (225)
46 2pl2_A Hypothetical conserved 99.3 1.2E-10 4E-15 107.5 19.0 99 345-449 74-183 (217)
47 2q7f_A YRRB protein; TPR, prot 99.3 2.9E-10 9.8E-15 106.8 20.8 203 341-602 20-222 (243)
48 3sf4_A G-protein-signaling mod 99.3 4.3E-10 1.5E-14 114.7 23.4 235 345-589 88-363 (406)
49 3u4t_A TPR repeat-containing p 99.3 2.3E-09 7.8E-14 102.6 26.9 246 346-614 5-260 (272)
50 4a1s_A PINS, partner of inscut 99.3 4.6E-10 1.6E-14 114.8 23.2 214 345-602 127-372 (411)
51 3ro2_A PINS homolog, G-protein 99.3 2.4E-10 8.1E-15 113.0 19.8 214 345-602 84-332 (338)
52 1ouv_A Conserved hypothetical 99.3 4.6E-09 1.6E-13 100.7 28.1 224 343-603 5-252 (273)
53 3u4t_A TPR repeat-containing p 99.3 1E-09 3.5E-14 105.1 23.5 163 346-561 76-248 (272)
54 2q7f_A YRRB protein; TPR, prot 99.2 2.9E-10 9.8E-15 106.8 17.5 207 174-450 20-226 (243)
55 3sf4_A G-protein-signaling mod 99.2 2.9E-09 1E-13 108.4 24.0 246 345-601 48-335 (406)
56 2h6f_A Protein farnesyltransfe 99.2 2.9E-09 9.9E-14 106.6 23.1 163 343-560 165-344 (382)
57 2h6f_A Protein farnesyltransfe 99.2 8.6E-09 3E-13 103.1 26.3 235 345-609 98-353 (382)
58 1ouv_A Conserved hypothetical 99.2 3E-08 1E-12 95.0 28.5 223 251-561 7-249 (273)
59 3ro2_A PINS homolog, G-protein 99.2 1.3E-09 4.3E-14 107.8 18.9 283 179-562 7-331 (338)
60 3ulq_A Response regulator aspa 99.1 1E-08 3.4E-13 103.7 25.1 305 187-601 22-367 (383)
61 3vtx_A MAMA; tetratricopeptide 99.1 8.1E-09 2.8E-13 92.2 21.3 165 343-561 4-168 (184)
62 4a1s_A PINS, partner of inscut 99.1 1.9E-09 6.5E-14 110.2 19.3 211 17-276 46-289 (411)
63 3nf1_A KLC 1, kinesin light ch 99.1 3.1E-09 1E-13 103.9 19.4 240 344-601 27-306 (311)
64 3e4b_A ALGK; tetratricopeptide 99.1 4.4E-08 1.5E-12 101.1 28.3 108 99-230 9-124 (452)
65 3nf1_A KLC 1, kinesin light ch 99.1 2.3E-09 7.8E-14 104.8 17.7 217 174-443 24-306 (311)
66 3e4b_A ALGK; tetratricopeptide 99.1 1.3E-07 4.6E-12 97.5 29.4 92 24-123 8-104 (452)
67 1hz4_A MALT regulatory protein 99.0 1.6E-07 5.5E-12 94.4 29.1 246 346-601 55-321 (373)
68 1hz4_A MALT regulatory protein 99.0 5.5E-07 1.9E-11 90.5 33.0 284 181-565 18-324 (373)
69 3q15_A PSP28, response regulat 99.0 8.2E-08 2.8E-12 96.8 26.7 321 174-600 7-363 (378)
70 4abn_A Tetratricopeptide repea 99.0 9.3E-09 3.2E-13 106.9 19.9 196 342-596 100-315 (474)
71 2ond_A Cleavage stimulation fa 99.0 2.2E-07 7.4E-12 90.7 28.7 200 343-562 49-269 (308)
72 2ond_A Cleavage stimulation fa 99.0 2.6E-07 8.9E-12 90.1 29.0 221 361-602 33-270 (308)
73 4e6h_A MRNA 3'-END-processing 99.0 3.9E-06 1.3E-10 89.8 39.5 205 343-563 342-570 (679)
74 4e6h_A MRNA 3'-END-processing 99.0 1E-05 3.4E-10 86.7 42.3 234 361-615 326-581 (679)
75 3vtx_A MAMA; tetratricopeptide 99.0 3.8E-08 1.3E-12 87.8 19.6 96 345-443 74-169 (184)
76 4abn_A Tetratricopeptide repea 99.0 9.4E-09 3.2E-13 106.9 17.8 187 193-449 84-290 (474)
77 3ulq_A Response regulator aspa 99.0 5.7E-08 1.9E-12 98.2 22.6 239 350-635 109-368 (383)
78 3q15_A PSP28, response regulat 99.0 6.2E-07 2.1E-11 90.3 29.3 171 218-444 107-290 (378)
79 3as5_A MAMA; tetratricopeptide 99.0 8.7E-08 3E-12 85.2 20.5 162 346-561 10-171 (186)
80 3as5_A MAMA; tetratricopeptide 98.9 1.5E-07 5E-12 83.6 20.8 165 251-528 9-173 (186)
81 3edt_B KLC 2, kinesin light ch 98.9 3.2E-08 1.1E-12 94.9 16.3 211 344-601 43-280 (283)
82 4gyw_A UDP-N-acetylglucosamine 98.9 1.2E-07 4.2E-12 102.7 21.3 168 341-563 5-174 (723)
83 4gyw_A UDP-N-acetylglucosamine 98.8 1.4E-07 4.7E-12 102.3 19.2 165 249-527 8-173 (723)
84 3edt_B KLC 2, kinesin light ch 98.8 1.8E-07 6.2E-12 89.6 17.9 203 188-443 12-280 (283)
85 4i17_A Hypothetical protein; T 98.7 1.1E-06 3.9E-11 81.1 20.5 44 501-546 119-165 (228)
86 4i17_A Hypothetical protein; T 98.7 1.8E-06 6.3E-11 79.7 21.1 198 342-561 5-207 (228)
87 2fo7_A Synthetic consensus TPR 98.7 9.3E-07 3.2E-11 73.5 17.3 94 347-443 4-97 (136)
88 3qky_A Outer membrane assembly 98.6 3E-06 1E-10 80.2 20.7 184 343-561 14-222 (261)
89 2fo7_A Synthetic consensus TPR 98.6 9.1E-07 3.1E-11 73.6 15.0 130 252-444 3-132 (136)
90 1qqe_A Vesicular transport pro 98.6 1E-06 3.5E-11 85.1 17.3 95 500-600 159-267 (292)
91 3mv2_B Coatomer subunit epsilo 98.6 4.6E-06 1.6E-10 79.1 19.0 180 363-561 85-280 (310)
92 3mv2_B Coatomer subunit epsilo 98.5 6.1E-06 2.1E-10 78.3 19.6 184 196-450 85-286 (310)
93 3urz_A Uncharacterized protein 98.5 3.1E-06 1.1E-10 76.9 17.3 92 349-443 9-116 (208)
94 1qqe_A Vesicular transport pro 98.5 4.2E-06 1.4E-10 80.7 17.6 207 179-442 39-267 (292)
95 3qky_A Outer membrane assembly 98.5 1.2E-05 4.1E-10 76.0 20.0 102 345-450 90-228 (261)
96 2r5s_A Uncharacterized protein 98.5 3.1E-06 1.1E-10 74.6 14.4 158 349-561 11-171 (176)
97 2ifu_A Gamma-SNAP; membrane fu 98.5 7.9E-06 2.7E-10 79.4 18.5 100 500-600 117-222 (307)
98 2yhc_A BAMD, UPF0169 lipoprote 98.4 4E-05 1.4E-09 70.5 21.4 65 344-410 4-71 (225)
99 2ifu_A Gamma-SNAP; membrane fu 98.4 1.3E-05 4.5E-10 77.8 18.8 195 352-595 44-254 (307)
100 2pzi_A Probable serine/threoni 98.4 3.4E-06 1.2E-10 91.8 15.5 171 355-549 402-583 (681)
101 2r5s_A Uncharacterized protein 98.4 5.9E-06 2E-10 72.8 14.3 82 360-443 90-172 (176)
102 3u3w_A Transcriptional activat 98.4 5.6E-05 1.9E-09 72.7 22.4 213 334-600 36-264 (293)
103 3qou_A Protein YBBN; thioredox 98.4 8.7E-06 3E-10 78.2 16.4 163 345-561 118-282 (287)
104 3qou_A Protein YBBN; thioredox 98.4 1.4E-05 4.6E-10 76.8 17.4 166 211-443 116-283 (287)
105 2yhc_A BAMD, UPF0169 lipoprote 98.3 5E-05 1.7E-09 69.8 19.6 91 353-445 105-214 (225)
106 2qfc_A PLCR protein; TPR, HTH, 98.3 8.2E-05 2.8E-09 71.6 21.5 174 383-600 78-264 (293)
107 2pzi_A Probable serine/threoni 98.3 8.3E-06 2.8E-10 88.7 15.3 155 343-518 432-587 (681)
108 2vsy_A XCC0866; transferase, g 98.3 2.3E-05 7.8E-10 83.6 18.2 153 357-529 2-158 (568)
109 3dra_A Protein farnesyltransfe 98.3 0.00052 1.8E-08 65.7 25.7 227 353-601 41-286 (306)
110 1hh8_A P67PHOX, NCF-2, neutrop 98.3 3.1E-05 1.1E-09 70.4 16.7 130 253-449 9-153 (213)
111 3urz_A Uncharacterized protein 98.3 3.2E-05 1.1E-09 70.1 16.5 128 475-614 65-196 (208)
112 4ga2_A E3 SUMO-protein ligase 98.3 1.3E-05 4.5E-10 68.3 12.9 100 346-450 33-133 (150)
113 4ga2_A E3 SUMO-protein ligase 98.2 6.5E-06 2.2E-10 70.3 10.6 87 354-443 7-93 (150)
114 3rjv_A Putative SEL1 repeat pr 98.2 8.1E-05 2.8E-09 67.6 18.4 177 399-604 5-199 (212)
115 2qfc_A PLCR protein; TPR, HTH, 98.2 0.00011 3.8E-09 70.6 20.1 189 346-580 77-283 (293)
116 3dra_A Protein farnesyltransfe 98.2 0.00038 1.3E-08 66.6 22.9 223 188-527 44-286 (306)
117 3gw4_A Uncharacterized protein 98.2 5.1E-05 1.7E-09 68.2 16.2 165 391-600 3-174 (203)
118 3u3w_A Transcriptional activat 98.2 0.00019 6.5E-09 69.0 20.7 175 347-565 78-268 (293)
119 2vsy_A XCC0866; transferase, g 98.2 3.4E-05 1.2E-09 82.2 16.8 152 190-410 2-158 (568)
120 3rjv_A Putative SEL1 repeat pr 98.1 0.00018 6.2E-09 65.3 19.0 176 195-446 4-199 (212)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.1 0.00018 6.2E-09 65.2 17.7 125 383-561 9-148 (213)
122 3gyz_A Chaperone protein IPGC; 98.1 4.8E-05 1.7E-09 64.6 12.5 105 340-449 31-136 (151)
123 1a17_A Serine/threonine protei 98.1 0.00011 3.7E-09 63.4 15.2 97 345-444 14-110 (166)
124 4gco_A Protein STI-1; structur 98.0 9.7E-05 3.3E-09 60.6 13.4 106 340-450 8-114 (126)
125 2uy1_A Cleavage stimulation fa 98.0 0.014 4.9E-07 60.2 32.8 358 191-635 28-413 (493)
126 4b4t_Q 26S proteasome regulato 98.0 0.00053 1.8E-08 70.0 21.9 173 418-600 58-243 (434)
127 3gw4_A Uncharacterized protein 98.0 0.00013 4.5E-09 65.4 15.0 167 354-566 2-179 (203)
128 1na0_A Designed protein CTPR3; 98.0 0.00015 5E-09 58.8 13.9 96 345-443 10-105 (125)
129 1a17_A Serine/threonine protei 98.0 0.00017 5.9E-09 62.1 14.8 130 251-443 14-145 (166)
130 2uy1_A Cleavage stimulation fa 98.0 0.0039 1.3E-07 64.5 27.0 341 18-443 14-412 (493)
131 1na0_A Designed protein CTPR3; 97.9 0.00017 5.9E-09 58.4 13.5 80 343-425 42-121 (125)
132 3q7a_A Farnesyltransferase alp 97.9 0.0047 1.6E-07 59.8 25.0 241 347-602 57-331 (349)
133 2c2l_A CHIP, carboxy terminus 97.9 0.00016 5.6E-09 68.9 14.6 190 343-561 3-197 (281)
134 2lni_A Stress-induced-phosphop 97.9 0.00027 9.3E-09 58.1 14.0 101 341-444 13-113 (133)
135 2vyi_A SGTA protein; chaperone 97.9 0.00029 9.8E-09 57.6 14.0 99 343-444 11-109 (131)
136 2vyi_A SGTA protein; chaperone 97.9 0.00024 8.2E-09 58.1 13.4 119 250-431 12-130 (131)
137 2e2e_A Formate-dependent nitri 97.9 0.00011 3.9E-09 64.3 11.9 121 355-528 21-144 (177)
138 3gyz_A Chaperone protein IPGC; 97.9 0.00024 8.1E-09 60.3 13.4 102 250-416 36-138 (151)
139 2lni_A Stress-induced-phosphop 97.9 0.00031 1.1E-08 57.7 13.8 120 246-429 12-132 (133)
140 4f3v_A ESX-1 secretion system 97.9 0.00039 1.3E-08 65.0 15.3 191 189-444 18-237 (282)
141 2e2e_A Formate-dependent nitri 97.9 0.00028 9.5E-09 61.8 13.9 122 474-603 20-145 (177)
142 1p5q_A FKBP52, FK506-binding p 97.8 0.0002 6.8E-09 70.3 14.2 145 250-443 147-293 (336)
143 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00067 2.3E-08 58.5 15.4 103 343-450 10-112 (164)
144 2vgx_A Chaperone SYCD; alterna 97.8 0.00026 8.9E-09 59.9 12.3 97 345-444 22-118 (148)
145 3upv_A Heat shock protein STI1 97.8 0.00036 1.2E-08 57.0 12.9 97 345-444 5-101 (126)
146 3q49_B STIP1 homology and U bo 97.8 0.00051 1.8E-08 56.9 13.9 100 342-444 7-106 (137)
147 2xcb_A PCRH, regulatory protei 97.8 0.0003 1E-08 59.0 12.4 97 345-444 19-115 (142)
148 1p5q_A FKBP52, FK506-binding p 97.8 0.00052 1.8E-08 67.3 15.8 97 344-443 147-258 (336)
149 2c2l_A CHIP, carboxy terminus 97.8 0.00038 1.3E-08 66.3 14.3 96 176-277 3-99 (281)
150 1elw_A TPR1-domain of HOP; HOP 97.7 0.00049 1.7E-08 54.9 12.6 102 344-450 4-105 (118)
151 3q7a_A Farnesyltransferase alp 97.7 0.0083 2.9E-07 58.0 23.0 182 180-431 57-258 (349)
152 2fbn_A 70 kDa peptidylprolyl i 97.7 7.5E-05 2.6E-09 67.0 8.2 98 345-445 89-187 (198)
153 4gco_A Protein STI-1; structur 97.7 0.00057 1.9E-08 55.9 12.6 109 15-131 9-117 (126)
154 2kck_A TPR repeat; tetratricop 97.7 0.0003 1E-08 55.7 10.6 97 345-444 7-106 (112)
155 4b4t_Q 26S proteasome regulato 97.7 0.0052 1.8E-07 62.5 22.5 206 351-569 11-251 (434)
156 3dss_A Geranylgeranyl transfer 97.7 0.021 7E-07 55.0 24.9 87 354-443 39-138 (331)
157 4gcn_A Protein STI-1; structur 97.7 0.00036 1.2E-08 57.2 11.1 98 345-444 9-112 (127)
158 3q49_B STIP1 homology and U bo 97.7 0.002 7E-08 53.1 15.8 94 500-599 10-103 (137)
159 2vgx_A Chaperone SYCD; alterna 97.7 0.00043 1.5E-08 58.6 11.5 108 9-122 11-118 (148)
160 2kck_A TPR repeat; tetratricop 97.7 0.0005 1.7E-08 54.3 11.4 102 498-603 5-107 (112)
161 3ro3_A PINS homolog, G-protein 97.7 0.0013 4.4E-08 56.0 14.8 100 501-600 51-156 (164)
162 4f3v_A ESX-1 secretion system 97.6 0.0011 3.6E-08 62.1 14.6 93 180-276 105-197 (282)
163 4gcn_A Protein STI-1; structur 97.6 0.0018 6E-08 53.0 14.6 110 499-611 8-119 (127)
164 1elr_A TPR2A-domain of HOP; HO 97.6 0.00065 2.2E-08 55.4 12.0 109 499-612 4-116 (131)
165 1hxi_A PEX5, peroxisome target 97.6 0.00054 1.9E-08 55.6 11.0 94 347-443 20-113 (121)
166 1elw_A TPR1-domain of HOP; HOP 97.6 0.0029 1E-07 50.2 15.3 99 498-602 3-101 (118)
167 3sz7_A HSC70 cochaperone (SGT) 97.6 0.002 6.9E-08 55.4 15.1 99 498-602 10-108 (164)
168 3dss_A Geranylgeranyl transfer 97.6 0.042 1.4E-06 52.8 25.0 203 177-450 26-271 (331)
169 2fbn_A 70 kDa peptidylprolyl i 97.5 0.0013 4.5E-08 58.7 13.7 96 346-444 40-151 (198)
170 1elr_A TPR2A-domain of HOP; HO 97.5 0.00085 2.9E-08 54.7 11.5 99 345-445 5-109 (131)
171 3upv_A Heat shock protein STI1 97.5 0.0024 8.1E-08 51.9 13.9 98 499-602 4-101 (126)
172 2xcb_A PCRH, regulatory protei 97.5 0.00079 2.7E-08 56.4 11.1 107 10-122 9-115 (142)
173 2xev_A YBGF; tetratricopeptide 97.5 0.0036 1.2E-07 50.9 14.9 98 348-450 6-109 (129)
174 2dba_A Smooth muscle cell asso 97.5 0.0024 8.3E-08 53.4 13.8 61 346-408 67-127 (148)
175 2dba_A Smooth muscle cell asso 97.5 0.002 6.9E-08 53.9 13.2 103 342-449 26-131 (148)
176 2xev_A YBGF; tetratricopeptide 97.3 0.0046 1.6E-07 50.3 12.7 96 504-609 7-110 (129)
177 3ro3_A PINS homolog, G-protein 97.2 0.0042 1.4E-07 52.6 12.8 136 499-634 9-157 (164)
178 1hxi_A PEX5, peroxisome target 97.2 0.002 6.9E-08 52.1 9.6 94 253-409 20-114 (121)
179 3k9i_A BH0479 protein; putativ 97.2 0.00076 2.6E-08 54.2 7.0 84 477-561 3-88 (117)
180 1wao_1 Serine/threonine protei 97.2 0.0014 4.7E-08 67.7 10.4 90 352-444 14-103 (477)
181 3rkv_A Putative peptidylprolyl 97.1 0.0034 1.2E-07 53.8 11.1 103 345-450 12-130 (162)
182 3k9i_A BH0479 protein; putativ 97.1 0.00072 2.5E-08 54.4 6.2 88 356-444 2-90 (117)
183 1wao_1 Serine/threonine protei 97.1 0.0025 8.4E-08 65.8 11.5 118 472-597 14-134 (477)
184 3n71_A Histone lysine methyltr 97.1 0.0029 1E-07 64.9 11.7 127 476-602 321-464 (490)
185 1kt0_A FKBP51, 51 kDa FK506-bi 97.1 0.0041 1.4E-07 63.8 12.9 145 250-443 268-414 (457)
186 1kt0_A FKBP51, 51 kDa FK506-bi 97.0 0.018 6.1E-07 59.0 16.6 106 498-610 267-386 (457)
187 1ihg_A Cyclophilin 40; ppiase 97.0 0.0072 2.5E-07 59.9 12.9 96 346-444 225-336 (370)
188 2hr2_A Hypothetical protein; a 96.9 0.0071 2.4E-07 50.8 10.5 112 500-611 12-145 (159)
189 3rkv_A Putative peptidylprolyl 96.9 0.029 9.9E-07 47.7 15.0 110 499-615 11-138 (162)
190 2if4_A ATFKBP42; FKBP-like, al 96.9 0.0034 1.2E-07 61.5 9.4 95 346-444 232-328 (338)
191 2l6j_A TPR repeat-containing p 96.8 0.0053 1.8E-07 48.2 8.5 90 343-436 3-99 (111)
192 2hr2_A Hypothetical protein; a 96.8 0.018 6.2E-07 48.4 11.8 96 346-443 13-130 (159)
193 3n71_A Histone lysine methyltr 96.8 0.013 4.3E-07 60.2 13.1 92 186-277 318-420 (490)
194 2kat_A Uncharacterized protein 96.7 0.0095 3.3E-07 47.3 9.6 81 361-444 2-82 (115)
195 1ihg_A Cyclophilin 40; ppiase 96.7 0.013 4.5E-07 58.0 12.4 90 344-436 273-362 (370)
196 2l6j_A TPR repeat-containing p 96.7 0.0013 4.4E-08 52.0 4.1 92 498-596 3-101 (111)
197 1na3_A Designed protein CTPR2; 96.6 0.018 6.3E-07 43.0 10.4 81 344-427 9-89 (91)
198 2if4_A ATFKBP42; FKBP-like, al 96.5 0.0094 3.2E-07 58.3 9.7 84 474-560 189-290 (338)
199 1dce_A Protein (RAB geranylger 96.5 0.18 6.3E-06 52.8 19.9 173 359-590 44-243 (567)
200 2kat_A Uncharacterized protein 96.3 0.032 1.1E-06 44.2 10.3 78 482-562 3-81 (115)
201 3ma5_A Tetratricopeptide repea 96.2 0.026 8.8E-07 43.5 9.0 62 344-407 7-68 (100)
202 1klx_A Cysteine rich protein B 96.2 0.1 3.5E-06 42.9 13.2 49 478-529 75-127 (138)
203 1klx_A Cysteine rich protein B 96.1 0.13 4.4E-06 42.3 13.4 114 477-605 8-129 (138)
204 3ly7_A Transcriptional activat 96.1 0.21 7.2E-06 48.3 16.2 86 498-592 276-361 (372)
205 3ma5_A Tetratricopeptide repea 95.9 0.034 1.2E-06 42.8 8.5 64 498-562 6-69 (100)
206 3mkq_A Coatomer beta'-subunit; 95.9 0.41 1.4E-05 52.9 20.4 45 355-406 663-707 (814)
207 1dce_A Protein (RAB geranylger 95.9 0.14 4.8E-06 53.7 15.5 173 189-430 40-241 (567)
208 1na3_A Designed protein CTPR2; 95.8 0.12 4.2E-06 38.2 11.0 82 498-585 8-89 (91)
209 3mkq_A Coatomer beta'-subunit; 95.7 0.093 3.2E-06 58.2 14.2 155 185-441 607-762 (814)
210 3qww_A SET and MYND domain-con 95.5 0.12 4.3E-06 51.9 12.5 90 511-600 310-409 (433)
211 3qwp_A SET and MYND domain-con 95.4 0.1 3.5E-06 52.5 11.8 95 506-600 294-398 (429)
212 1zu2_A Mitochondrial import re 95.3 0.033 1.1E-06 46.7 6.5 91 355-450 13-124 (158)
213 1zu2_A Mitochondrial import re 95.2 0.036 1.2E-06 46.4 6.4 96 476-581 14-132 (158)
214 3qww_A SET and MYND domain-con 94.8 0.15 5.3E-06 51.2 10.9 87 477-563 311-411 (433)
215 3qwp_A SET and MYND domain-con 94.8 0.28 9.6E-06 49.3 12.8 95 349-443 292-399 (429)
216 2kc7_A BFR218_protein; tetratr 94.7 0.15 5E-06 38.7 8.4 59 350-410 6-65 (99)
217 3mkq_B Coatomer subunit alpha; 94.4 1.3 4.5E-05 37.6 14.0 83 342-440 32-114 (177)
218 1pc2_A Mitochondria fission pr 94.3 0.51 1.7E-05 39.0 10.9 86 360-450 14-104 (152)
219 3mkq_B Coatomer subunit alpha; 93.7 1.2 4.2E-05 37.7 12.4 126 223-441 16-141 (177)
220 3bee_A Putative YFRE protein; 93.4 0.64 2.2E-05 34.9 9.3 65 343-409 5-72 (93)
221 1pc2_A Mitochondria fission pr 93.3 0.61 2.1E-05 38.6 9.6 95 35-134 14-110 (152)
222 3ly7_A Transcriptional activat 93.1 1.2 4.1E-05 43.0 12.8 135 479-623 214-359 (372)
223 2v5f_A Prolyl 4-hydroxylase su 93.0 1.1 3.7E-05 34.4 10.5 76 533-610 4-81 (104)
224 3bee_A Putative YFRE protein; 92.9 0.75 2.6E-05 34.5 9.0 70 52-123 4-73 (93)
225 1wy6_A Hypothetical protein ST 92.4 3.5 0.00012 32.9 13.7 121 477-605 20-157 (172)
226 1nzn_A CGI-135 protein, fissio 92.3 2 6.9E-05 34.0 10.9 102 30-134 12-113 (126)
227 4h7y_A Dual specificity protei 92.2 2.5 8.6E-05 34.5 11.5 110 414-533 12-128 (161)
228 3lvg_A Clathrin heavy chain 1; 91.8 0.16 5.4E-06 50.4 4.9 218 21-273 56-285 (624)
229 1wy6_A Hypothetical protein ST 91.3 4.8 0.00016 32.2 15.0 79 477-561 74-152 (172)
230 3u64_A Protein TP_0956; tetrat 91.1 0.75 2.6E-05 42.6 8.3 75 340-416 192-278 (301)
231 2v5f_A Prolyl 4-hydroxylase su 90.2 1.3 4.4E-05 34.0 8.1 64 498-561 4-73 (104)
232 2kc7_A BFR218_protein; tetratr 89.7 2.6 8.9E-05 31.4 9.5 63 25-92 6-70 (99)
233 4b4t_P 26S proteasome regulato 89.5 19 0.00064 36.2 19.3 98 503-600 141-245 (445)
234 3u64_A Protein TP_0956; tetrat 89.3 8 0.00027 35.8 13.5 109 477-599 176-295 (301)
235 1nzn_A CGI-135 protein, fissio 88.9 3.3 0.00011 32.8 9.3 90 356-450 13-107 (126)
236 2ff4_A Probable regulatory pro 87.1 2 6.8E-05 42.4 8.9 72 347-420 174-250 (388)
237 4h7y_A Dual specificity protei 86.7 5.3 0.00018 32.7 9.4 111 498-615 12-135 (161)
238 3o48_A Mitochondria fission 1 85.7 10 0.00034 30.3 10.3 83 49-134 35-117 (134)
239 2ff4_A Probable regulatory pro 85.3 4.1 0.00014 40.1 10.2 76 501-577 173-249 (388)
240 1v54_E Cytochrome C oxidase po 84.5 6.4 0.00022 29.5 8.0 63 514-581 25-87 (109)
241 1n11_A Ankyrin; clathrin, BAND 82.1 7 0.00024 39.1 10.6 114 153-275 18-135 (437)
242 3ffl_A Anaphase-promoting comp 81.6 7.8 0.00027 32.3 8.6 100 502-601 23-150 (167)
243 4gns_B Protein CSD3, chitin bi 80.5 42 0.0014 36.0 16.0 118 477-600 261-398 (754)
244 1v54_E Cytochrome C oxidase po 79.8 17 0.00058 27.3 10.5 51 336-388 37-87 (109)
245 3lvg_A Clathrin heavy chain 1; 79.3 0.36 1.2E-05 48.0 -0.2 183 53-276 53-255 (624)
246 4gns_B Protein CSD3, chitin bi 79.0 62 0.0021 34.7 16.7 54 351-406 344-397 (754)
247 1y8m_A FIS1; mitochondria, unk 78.8 24 0.00083 28.5 11.1 81 51-134 36-116 (144)
248 3eiq_C Programmed cell death p 78.3 22 0.00077 34.1 11.9 75 346-422 219-295 (358)
249 2y69_E Cytochrome C oxidase su 77.2 20 0.00068 28.6 9.0 63 514-581 68-130 (152)
250 4b4t_P 26S proteasome regulato 75.8 68 0.0023 32.0 23.2 168 347-526 140-322 (445)
251 4fhn_B Nucleoporin NUP120; pro 74.9 61 0.0021 37.1 16.6 82 347-431 902-987 (1139)
252 2y69_E Cytochrome C oxidase su 71.0 38 0.0013 27.0 10.5 51 336-388 80-130 (152)
253 4b4t_R RPN7, 26S proteasome re 70.1 29 0.001 34.5 11.1 101 501-602 133-237 (429)
254 1n11_A Ankyrin; clathrin, BAND 68.3 16 0.00055 36.4 8.9 107 159-274 57-167 (437)
255 3lpz_A GET4 (YOR164C homolog); 68.2 82 0.0028 29.8 19.5 174 56-277 37-214 (336)
256 4fhn_B Nucleoporin NUP120; pro 67.1 1.7E+02 0.0059 33.4 18.0 147 349-516 817-988 (1139)
257 1qsa_A Protein (soluble lytic 67.0 1.3E+02 0.0044 31.5 28.1 227 346-601 104-347 (618)
258 1zbp_A Hypothetical protein VP 66.0 11 0.00038 34.3 6.2 56 352-409 5-60 (273)
259 4g8k_A 2-5A-dependent ribonucl 65.8 25 0.00085 33.4 9.4 52 156-212 32-87 (337)
260 1wdy_A 2-5A-dependent ribonucl 65.5 7 0.00024 36.0 5.2 94 351-449 152-247 (285)
261 4b4t_R RPN7, 26S proteasome re 65.0 31 0.001 34.4 10.0 97 178-276 132-234 (429)
262 2zu6_B Programmed cell death p 64.2 78 0.0027 29.6 11.9 69 346-416 168-238 (307)
263 3ffl_A Anaphase-promoting comp 61.0 69 0.0024 26.7 9.5 105 337-441 11-148 (167)
264 2nsz_A Programmed cell death p 60.9 60 0.0021 25.7 9.3 69 346-416 9-79 (129)
265 3txn_A 26S proteasome regulato 60.8 1.3E+02 0.0043 29.4 18.4 94 504-599 104-207 (394)
266 2wpv_A GET4, UPF0363 protein Y 60.2 1.1E+02 0.0038 28.6 18.8 46 533-586 133-178 (312)
267 1wdy_A 2-5A-dependent ribonucl 58.4 23 0.00077 32.4 7.4 88 354-450 189-281 (285)
268 3lpz_A GET4 (YOR164C homolog); 58.0 1.3E+02 0.0044 28.5 20.3 23 383-405 38-60 (336)
269 3eu9_A Huntingtin-interacting 55.9 25 0.00086 31.0 7.1 76 158-237 18-98 (240)
270 1k1a_A B-cell lymphoma 3-encod 55.1 70 0.0024 28.1 10.0 88 184-276 13-102 (241)
271 2ion_A PDCD4, programmed cell 53.3 57 0.002 26.7 8.0 69 346-416 11-81 (152)
272 3esl_A Checkpoint serine/threo 50.2 1.2E+02 0.004 26.3 9.5 57 357-413 92-148 (202)
273 3b7b_A Euchromatic histone-lys 50.0 32 0.0011 30.4 6.7 82 387-492 148-235 (237)
274 2p58_C Putative type III secre 47.9 71 0.0024 23.9 6.6 81 356-445 19-99 (116)
275 2p58_C Putative type III secre 45.5 88 0.003 23.4 6.8 30 497-528 69-98 (116)
276 3esl_A Checkpoint serine/threo 44.9 73 0.0025 27.5 7.5 56 478-533 93-149 (202)
277 2uwj_G Type III export protein 43.7 68 0.0023 24.0 5.9 81 357-446 19-99 (115)
278 3kea_A K1L; tropism, ANK repea 43.3 43 0.0015 30.8 6.6 20 386-405 164-183 (285)
279 3ljn_A Hypothetical protein; a 42.7 1.7E+02 0.0059 27.7 11.2 53 160-212 64-116 (364)
280 1wgl_A TOLL-interacting protei 41.1 22 0.00076 23.6 2.9 56 67-128 3-58 (59)
281 3jxi_A Vanilloid receptor-rela 40.9 30 0.001 31.2 5.1 53 389-441 11-72 (260)
282 4a1g_A Mitotic checkpoint seri 40.7 72 0.0025 26.1 6.5 51 363-413 84-134 (152)
283 2qx5_A Nucleoporin NIC96; mRNA 40.5 3.5E+02 0.012 28.5 25.6 81 182-276 299-382 (661)
284 2wpv_A GET4, UPF0363 protein Y 40.3 2.3E+02 0.008 26.4 19.7 173 56-277 35-215 (312)
285 3txn_A 26S proteasome regulato 39.7 2.7E+02 0.0094 27.0 22.9 248 346-610 21-291 (394)
286 3eu9_A Huntingtin-interacting 39.4 27 0.00091 30.9 4.4 87 351-449 13-103 (240)
287 4a1g_A Mitotic checkpoint seri 38.8 83 0.0028 25.7 6.6 51 483-533 84-135 (152)
288 2ion_A PDCD4, programmed cell 37.7 1.7E+02 0.0057 23.9 9.2 59 474-533 19-79 (152)
289 2d2s_A Exocyst complex compone 37.6 2E+02 0.0068 25.5 9.6 92 349-443 23-119 (235)
290 3hra_A Ankyrin repeat family p 37.5 1.3E+02 0.0046 25.2 8.6 63 352-415 111-173 (201)
291 2wvi_A Mitotic checkpoint seri 37.3 1E+02 0.0034 25.6 7.0 52 483-534 79-131 (164)
292 1k1a_A B-cell lymphoma 3-encod 36.5 25 0.00085 31.2 3.6 152 100-274 13-171 (241)
293 3hra_A Ankyrin repeat family p 35.7 84 0.0029 26.6 7.0 81 351-438 9-92 (201)
294 3b7b_A Euchromatic histone-lys 35.0 55 0.0019 28.8 5.7 54 386-443 180-235 (237)
295 1zbp_A Hypothetical protein VP 34.7 2.6E+02 0.009 25.4 13.3 60 388-450 5-64 (273)
296 2b7e_A PRE-mRNA processing pro 34.1 56 0.0019 21.7 3.9 34 360-394 2-36 (59)
297 1ug3_A EIF4GI, eukaryotic prot 33.9 3.1E+02 0.011 25.9 13.6 99 21-122 13-114 (339)
298 2d2s_A Exocyst complex compone 33.5 2.6E+02 0.0087 24.8 11.9 103 506-615 25-142 (235)
299 3ljn_A Hypothetical protein; a 32.8 1.5E+02 0.005 28.2 8.8 100 342-449 16-115 (364)
300 4ets_A Ferric uptake regulatio 32.5 1.1E+02 0.0039 25.2 6.7 68 74-142 14-83 (162)
301 3jxi_A Vanilloid receptor-rela 32.0 37 0.0013 30.5 4.1 28 100-127 9-36 (260)
302 2f8y_A Notch homolog 1, transl 31.9 1.3E+02 0.0044 25.9 7.7 52 182-237 27-80 (223)
303 1wty_A Hypothetical protein TT 31.6 1E+02 0.0035 23.8 6.0 77 34-120 3-79 (119)
304 2ijq_A Hypothetical protein; s 31.5 1.6E+02 0.0055 24.3 7.2 53 391-443 43-103 (161)
305 4fke_A Aminopeptidase N; zinc 31.2 5.4E+02 0.018 28.4 13.8 167 58-276 690-857 (909)
306 2zu6_B Programmed cell death p 31.0 3.3E+02 0.011 25.3 11.8 59 347-408 6-66 (307)
307 1qsa_A Protein (soluble lytic 30.8 4.8E+02 0.016 27.2 27.4 50 356-407 297-346 (618)
308 3t8k_A Uncharacterized protein 30.5 2.3E+02 0.0079 23.7 8.8 169 351-534 10-186 (186)
309 3d5l_A Regulatory protein RECX 29.8 2.8E+02 0.0097 24.2 11.4 52 480-533 92-144 (221)
310 4aez_C MAD3, mitotic spindle c 29.0 96 0.0033 27.3 5.8 53 481-533 131-184 (223)
311 1e5r_A Proline oxidase; oxidor 28.7 87 0.003 28.9 5.7 68 12-80 202-272 (290)
312 4aez_C MAD3, mitotic spindle c 28.6 80 0.0027 27.7 5.2 53 361-413 131-183 (223)
313 2yru_A Steroid receptor RNA ac 28.0 2.1E+02 0.0072 22.1 8.4 52 550-601 38-89 (118)
314 2wvi_A Mitotic checkpoint seri 28.0 2.6E+02 0.0088 23.2 9.3 51 363-413 79-129 (164)
315 3kea_A K1L; tropism, ANK repea 27.8 2.1E+02 0.0073 25.9 8.7 63 349-417 163-225 (285)
316 1wty_A Hypothetical protein TT 27.3 2.1E+02 0.0073 22.0 7.8 75 480-561 4-79 (119)
317 3ctd_A Putative ATPase, AAA fa 26.9 3.1E+02 0.011 23.7 9.8 102 386-499 38-147 (213)
318 1ug3_A EIF4GI, eukaryotic prot 26.8 87 0.003 29.8 5.7 64 346-411 13-77 (339)
319 2fe3_A Peroxide operon regulat 26.3 1.9E+02 0.0065 23.2 7.0 62 488-550 11-72 (145)
320 2uwj_G Type III export protein 25.6 2.1E+02 0.0073 21.4 9.2 54 160-216 53-106 (115)
321 3rjo_A Endoplasmic reticulum a 25.5 4.8E+02 0.016 25.4 17.3 173 18-210 196-373 (419)
322 4b4t_S RPN3, 26S proteasome re 25.2 4E+02 0.014 27.0 10.2 31 246-276 227-257 (523)
323 2xig_A Ferric uptake regulatio 24.7 1.8E+02 0.006 23.6 6.5 62 488-550 16-77 (150)
324 2b7e_A PRE-mRNA processing pro 24.4 81 0.0028 20.9 3.4 33 35-67 2-35 (59)
325 1mzb_A Ferric uptake regulatio 23.7 1.8E+02 0.0062 23.0 6.3 61 489-550 8-69 (136)
326 2xig_A Ferric uptake regulatio 23.4 2.9E+02 0.01 22.2 7.7 63 80-143 14-76 (150)
327 3pvs_A Replication-associated 23.0 5.5E+02 0.019 25.3 15.8 64 182-245 257-328 (447)
328 1oai_A Nuclear RNA export fact 22.7 64 0.0022 21.4 2.7 26 356-381 32-57 (59)
329 2rfa_A Transient receptor pote 22.5 3.6E+02 0.012 23.0 9.7 89 351-443 125-222 (232)
330 2fu4_A Ferric uptake regulatio 22.2 2E+02 0.0069 20.0 5.8 58 490-548 8-66 (83)
331 3aji_A 26S proteasome non-ATPa 22.0 60 0.002 28.4 3.4 150 97-274 7-160 (231)
332 3vu7_H DNA repair protein REV1 21.9 2.9E+02 0.0098 21.6 7.3 27 498-524 59-85 (124)
333 2r9g_A AAA ATPase, central reg 21.6 3.9E+02 0.013 23.0 10.1 99 501-601 17-116 (204)
334 3ygs_P Procaspase 9; apoptosis 21.6 1.9E+02 0.0064 21.4 5.5 37 479-519 52-88 (97)
335 4ets_A Ferric uptake regulatio 21.2 1.3E+02 0.0045 24.8 5.1 48 383-430 35-84 (162)
336 4ady_A RPN2, 26S proteasome re 21.0 8.7E+02 0.03 26.8 33.1 501 19-615 145-712 (963)
337 3bu8_A Telomeric repeat-bindin 20.7 3.5E+02 0.012 23.5 7.4 26 349-374 119-144 (235)
338 4g8k_A 2-5A-dependent ribonucl 20.6 5E+02 0.017 23.9 14.7 52 181-236 26-80 (337)
339 1naf_A ADP-ribosylation factor 20.2 3.1E+02 0.01 22.5 6.8 61 57-122 18-78 (158)
340 3eyy_A Putative iron uptake re 20.0 1.6E+02 0.0053 23.8 5.2 62 485-548 5-66 (145)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-33 Score=306.92 Aligned_cols=469 Identities=10% Similarity=-0.068 Sum_probs=335.3
Q ss_pred chhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHH
Q 048743 54 RHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLL 133 (653)
Q Consensus 54 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 133 (653)
...|+.++..+.+.|+ .++|..+|.++.... |+..++..++.+|.+.|++++|+.+|+.+... .++..+++.
T Consensus 84 ~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 155 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQ---YKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL 155 (597)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred HHHHHHHHHHHHHccC---chHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence 3445555555555554 455555555544222 34445555555555555555555555544322 333333333
Q ss_pred HHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCcc-------------------CCCCchhhHHHHHHHHHhcCChh
Q 048743 134 VFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAE-------------------LIKPDTMIFNLVLHACVRFGSSL 194 (653)
Q Consensus 134 li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------------------~~~~~~~~yn~li~~~~~~g~~~ 194 (653)
+ ...+...|++++|.++|++ +.+++..+|+.++.+|.+.|+++
T Consensus 156 l------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 156 A------------------AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp H------------------HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred H------------------HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 3 2223333344444444442 33446899999999999999999
Q ss_pred hHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcCChhhh--HHH-HHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHH
Q 048743 195 KGQHIMELMSQTGVVADAHS-IIILAQIHEMNCQRDEL--KKF-KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAG 270 (653)
Q Consensus 195 ~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a--~~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 270 (653)
+|.++|++|.+.+ |+..+ +..+...+...+..+.. ..+ +..+.. ........+|+.++.+|.+.|++++|.
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK---EDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG---GGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCccccc---chHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 9999999999864 55443 44444433322222111 111 222211 123334557888899999999999999
Q ss_pred HHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHH
Q 048743 271 ELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKL 350 (653)
Q Consensus 271 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 350 (653)
++|+++.+ ..++..+|+.+
T Consensus 293 ~~~~~~~~-------------------------------------------------------------~~~~~~~~~~l 311 (597)
T 2xpi_A 293 DYLSSING-------------------------------------------------------------LEKSSDLLLCK 311 (597)
T ss_dssp HHHHTSTT-------------------------------------------------------------GGGCHHHHHHH
T ss_pred HHHHHhhc-------------------------------------------------------------CCchHHHHHHH
Confidence 99999831 13678889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048743 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKM 430 (653)
Q Consensus 351 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 430 (653)
+.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|..+|+++.+. .+.+..+|+.+..+|.+.|+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhcc
Confidence 999999999999999999998877 677788999999999999999999999999864 34578899999999999999
Q ss_pred hHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 048743 431 FREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFC 510 (653)
Q Consensus 431 ~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~ 510 (653)
+++|.++|+++.+. .|+.... ..... ..|.+.|++++|..+|+++.+.+. .+..+|+.++.+|.
T Consensus 389 ~~~A~~~~~~~~~~--~~~~~~~--~~~l~-----------~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 389 ISEARRYFSKSSTM--DPQFGPA--WIGFA-----------HSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHH--HHHHH-----------HHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHH--HHHHH-----------HHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 99999999999874 3443111 11111 224458999999999999987652 37889999999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccC--HHHHHHHHHHHHhCCC
Q 048743 511 KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVS--RDLYETLLLNFLQGGY 588 (653)
Q Consensus 511 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~--~~~y~~li~~~~~~g~ 588 (653)
+.|++++|+++|++|.+.. +.+..+|+.+...|.+.|++++|.++|+.+.+...+.+..|+ ..+|..+..+|.+.|+
T Consensus 453 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999998763 347888999999999999999999999998766555566787 7899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHH--HHhhhhhHHhhhhhHHHHHH
Q 048743 589 FERVMEVIGYMKKQNMYVDKLMYKSEF--LKHHKHLYRRLKVSNARTEA 635 (653)
Q Consensus 589 ~~~a~~~~~~m~~~g~~p~~~t~~~l~--~~~~~~~~~~~~~~~~~~~~ 635 (653)
+++|.++++++.+.+ +.+..+|..+. +...|+.+.|.+..+...+.
T Consensus 532 ~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 532 YDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999998765 33667777766 66778899998888888774
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-33 Score=304.38 Aligned_cols=477 Identities=9% Similarity=-0.049 Sum_probs=383.3
Q ss_pred chHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHH
Q 048743 17 SSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLL 96 (653)
Q Consensus 17 p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~ 96 (653)
++...+..++..+.+.|++++|..+|+.+... .|+..++..+..++.+.|+ .++|..+|.++... .++..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~---~~~~~~~ 153 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGD---YARAKCLLTKEDLY---NRSSACR 153 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTC---HHHHHHHHHHTCGG---GTCHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCc---HHHHHHHHHHHhcc---ccchhHH
Confidence 57788999999999999999999999999853 4677889999999999998 79999999887432 3588899
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHcC---------------ccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhh
Q 048743 97 AKLSLSLARAQMPVPASMILRLMLGR---------------ENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLH 161 (653)
Q Consensus 97 ~~li~~~~~~g~~~~a~~~~~~m~~~---------------g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~ 161 (653)
+.++.+|.+.|++++|+++|+++... |..++..+|+ .+...+...|+
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~l~~~~~~~g~ 215 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCY------------------LRGQVYTNLSN 215 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHH------------------HHHHHHHHTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHH------------------HHHHHHHHcCC
Confidence 99999999999999999999853221 1122233444 44556666678
Q ss_pred hhhhhcCCccCCC--C-chhhHHHHHHHHHhcCChhhH--HHH-HHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHH
Q 048743 162 LSAEKSNGAELIK--P-DTMIFNLVLHACVRFGSSLKG--QHI-MELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFK 235 (653)
Q Consensus 162 ~~~a~~~~~~~~~--~-~~~~yn~li~~~~~~g~~~~a--~~l-~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 235 (653)
+++|.+.|+++.. | +...+..+...+...++.+.+ ..+ +..+...+..++..+|..++..|.+.|++++|.+++
T Consensus 216 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 216 FDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 8888888876542 3 344555565555444333322 222 666777777777778888899999999999999999
Q ss_pred HHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccch
Q 048743 236 CYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMP 315 (653)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (653)
+.+.+. ..+..+++.++.+|.+.|++++|.++|+++.+.
T Consensus 296 ~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------------------ 334 (597)
T 2xpi_A 296 SSINGL-----EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI------------------------------------ 334 (597)
T ss_dssp HTSTTG-----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------------
T ss_pred HHhhcC-----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc------------------------------------
Confidence 998765 245678999999999999999999999999320
Q ss_pred hhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCC
Q 048743 316 ELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF 395 (653)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 395 (653)
-+.+..+|+.++.++.+.|++++|..+++++.+.. +.+..+|+.+...|.+.|+
T Consensus 335 ------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 335 ------------------------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp ------------------------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHTTC
T ss_pred ------------------------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHhcc
Confidence 11244578899999999999999999999999776 7788889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhccccccccc
Q 048743 396 LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSS 475 (653)
Q Consensus 396 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 475 (653)
+++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. .|+..... .... ..|.
T Consensus 389 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~--~~l~-----------~~~~ 452 (597)
T 2xpi_A 389 ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPY--LFLG-----------MQHM 452 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHH--HHHH-----------HHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHH--HHHH-----------HHHH
Confidence 999999999998753 346889999999999999999999999999875 34331111 1111 1244
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHhccCC
Q 048743 476 LMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM----KIRPT--VETFYYLVYGHSSLEM 549 (653)
Q Consensus 476 ~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~t~~~li~~~~~~~~ 549 (653)
+.|++++|.++|+++.+... .+..+|+.++..|.+.|++++|+++|++|.+. +..|+ ..+|..+..+|.+.|+
T Consensus 453 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 58999999999999997652 37899999999999999999999999999886 77888 7899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHh
Q 048743 550 YRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLM 610 (653)
Q Consensus 550 ~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 610 (653)
+++|.++++.+.+. -+.+..+|..+..+|.+.|++++|.+.|+++.+. .|+...
T Consensus 532 ~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~ 585 (597)
T 2xpi_A 532 YDAAIDALNQGLLL-----STNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIM 585 (597)
T ss_dssp HHHHHHHHHHHHHH-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChH
Confidence 99999999988743 1447899999999999999999999999999864 465433
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.7e-31 Score=277.75 Aligned_cols=214 Identities=13% Similarity=0.073 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 048743 361 SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440 (653)
Q Consensus 361 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 440 (653)
..+..+.+++.+++....+..+++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+...+
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~------- 79 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE------- 79 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS-------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh-------
Confidence 4456677777777744444456899999999999999999999999999999999999999999988775322
Q ss_pred HHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 048743 441 MRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALK 520 (653)
Q Consensus 441 m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~ 520 (653)
..+.+.++.|.++|++|.+.|+.||..+||+||.+|++.|++++|++
T Consensus 80 ---------------------------------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~ 126 (501)
T 4g26_A 80 ---------------------------------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFD 126 (501)
T ss_dssp ---------------------------------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ---------------------------------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 11256788899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 521 IYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 521 ~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
+|++|.+.|+.||..||+.||.+|++.|++++|.++|++|. +.|+.||..+|++||.+|++.|++++|.+++++|+
T Consensus 127 l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~----~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 127 MVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV----ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986 56999999999999999999999999999999999
Q ss_pred hCCCCCCHHhHHHHHHHh
Q 048743 601 KQNMYVDKLMYKSEFLKH 618 (653)
Q Consensus 601 ~~g~~p~~~t~~~l~~~~ 618 (653)
+.|+.|+..||++++..+
T Consensus 203 ~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 203 DLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHTSSBCHHHHHHHHHHH
T ss_pred HhCCCcCHHHHHHHHHHH
Confidence 999999999999998443
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=9.4e-30 Score=264.58 Aligned_cols=188 Identities=14% Similarity=0.050 Sum_probs=172.6
Q ss_pred HHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHH
Q 048743 252 FYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQE 331 (653)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (653)
+++.+|++|++.|++++|.++|++|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M------------------------------------------------------- 52 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEA------------------------------------------------------- 52 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHH-------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH-------------------------------------------------------
Confidence 5788999999999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHH
Q 048743 332 LVLFRNGKLLHSNRAMAKLINGYKKHGK---------NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDI 402 (653)
Q Consensus 332 ~~~~~~~~~~p~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 402 (653)
...|+.||..|||+||.+|++.+. +++|.++|++|...| +.||..||++||.+|++.|++++|.++
T Consensus 53 ----~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l 127 (501)
T 4g26_A 53 ----RRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK-VVPNEATFTNGARLAVAKDDPEMAFDM 127 (501)
T ss_dssp ----HHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ----HHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 467899999999999999997765 678999999999888 778888899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHH
Q 048743 403 LDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL 482 (653)
Q Consensus 403 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 482 (653)
|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|
T Consensus 128 ~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P---------------------------------- 173 (501)
T 4g26_A 128 VKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP---------------------------------- 173 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC----------------------------------
T ss_pred HHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------------------------------
Confidence 9999999999999999999999999999999999998888877664
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 048743 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548 (653)
Q Consensus 483 a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 548 (653)
|..+|++||.+|++.|++++|.++|++|++.|..|+..||+.++..|+..+
T Consensus 174 ---------------d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 174 ---------------EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred ---------------CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 678999999999999999999999999999999999999999999998743
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=8.5e-22 Score=201.19 Aligned_cols=377 Identities=13% Similarity=-0.002 Sum_probs=249.3
Q ss_pred HHHHHhccchhHHHHHHHHhhhhcCCCCch-hHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHH
Q 048743 26 LESASKNHQVGEAWETFNDFQRLHGIPERH-VVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLA 104 (653)
Q Consensus 26 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~ 104 (653)
...+.+.|++++|.+.|+.+.+. .|+.. .+..+...+...|+ .++|...+....+..| .+..+|..+...|.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~---~~~a~~~~~~a~~~~p--~~~~~~~~lg~~~~ 78 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRR---LDRSAHFSTLAIKQNP--LLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCC--CchHHHHHHHHHHH
Confidence 34566788999999988887763 35443 44455555555666 6788888877766544 36778888888888
Q ss_pred hcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCchhhHHHHH
Q 048743 105 RAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVL 184 (653)
Q Consensus 105 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li 184 (653)
+.|++++|++.|+++.+.. +.+..+|..+.
T Consensus 79 ~~g~~~~A~~~~~~al~~~--------------------------------------------------p~~~~~~~~l~ 108 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLK--------------------------------------------------PDFIDGYINLA 108 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC--------------------------------------------------TTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcC--------------------------------------------------cchHHHHHHHH
Confidence 9999999988888875421 22345677788
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhcc
Q 048743 185 HACVRFGSSLKGQHIMELMSQTGVVADAHS-IIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKF 263 (653)
Q Consensus 185 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 263 (653)
.++.+.|++++|.+.|+++.+. .|+... +..+...+...|++++|.+.++.+....+.. ..+|+.+...|.+.
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~ 182 (388)
T 1w3b_A 109 AALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF----AVAWSNLGCVFNAQ 182 (388)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc
Confidence 8888888888888888888865 455544 5566666667777777777777766543221 23567777777777
Q ss_pred CCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCC-
Q 048743 264 DDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLH- 342 (653)
Q Consensus 264 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 342 (653)
|++++|...|+++.+ ..|
T Consensus 183 g~~~~A~~~~~~al~-------------------------------------------------------------~~p~ 201 (388)
T 1w3b_A 183 GEIWLAIHHFEKAVT-------------------------------------------------------------LDPN 201 (388)
T ss_dssp TCHHHHHHHHHHHHH-------------------------------------------------------------HCTT
T ss_pred CCHHHHHHHHHHHHh-------------------------------------------------------------cCCC
Confidence 777777777777621 112
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (653)
+...|..+...+...|++++|...|++..... |.+..++..+...|.+.|++++|...|+++.+.. +.+..+|..+.
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 278 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLA 278 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 23456666677777777777777777766665 5556667777777777777777777777776643 22456677777
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHH
Q 048743 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502 (653)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y 502 (653)
.++.+.|++++|...|+++.+. .|+ +..+|
T Consensus 279 ~~~~~~g~~~~A~~~~~~al~~--~p~------------------------------------------------~~~~~ 308 (388)
T 1w3b_A 279 NALKEKGSVAEAEDCYNTALRL--CPT------------------------------------------------HADSL 308 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHH--CTT------------------------------------------------CHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--Ccc------------------------------------------------cHHHH
Confidence 7777777777777777766653 232 44556
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc-CHHHHHHHHH
Q 048743 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV-SRDLYETLLL 581 (653)
Q Consensus 503 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p-~~~~y~~li~ 581 (653)
+.+...+.+.|++++|++.|+++.+.. +.+..++..+..++.+.|++++|...++.+. ...| +...|..+..
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~------~~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAI------RISPTFADAYSNMGN 381 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH------TTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hhCCCCHHHHHhHHH
Confidence 666677777777777777777766531 2235566667777777777777777776665 2233 3444554444
Q ss_pred HHHhC
Q 048743 582 NFLQG 586 (653)
Q Consensus 582 ~~~~~ 586 (653)
.+...
T Consensus 382 ~~~~~ 386 (388)
T 1w3b_A 382 TLKEM 386 (388)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 44443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=4e-21 Score=196.18 Aligned_cols=356 Identities=10% Similarity=-0.029 Sum_probs=246.8
Q ss_pred hhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHH
Q 048743 73 LQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFL 152 (653)
Q Consensus 73 ~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l 152 (653)
+++|.+.+.++.+..|. +...+..+...+...|++++|...++...+.
T Consensus 15 ~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~------------------------------ 62 (388)
T 1w3b_A 15 FEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ------------------------------ 62 (388)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------------------
Confidence 56666666665554433 3444555555566666666666665544321
Q ss_pred HHHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHH-HHHHHHHHHHhcCChhhh
Q 048743 153 IQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAH-SIIILAQIHEMNCQRDEL 231 (653)
Q Consensus 153 ~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a 231 (653)
.+.+..+|+.+..+|.+.|++++|.+.|+++.+. .|+.. +|..+..++.+.|++++|
T Consensus 63 --------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 120 (388)
T 1w3b_A 63 --------------------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGA 120 (388)
T ss_dssp --------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHH
T ss_pred --------------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHH
Confidence 2345667777888888888888888888887764 45543 466777777777777777
Q ss_pred HHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhh
Q 048743 232 KKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKL 311 (653)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (653)
.+.++.+.+..+... .++..+...+...|++++|.++|+++.+
T Consensus 121 ~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------------------- 163 (388)
T 1w3b_A 121 VQAYVSALQYNPDLY----CVRSDLGNLLKALGRLEEAKACYLKAIE--------------------------------- 163 (388)
T ss_dssp HHHHHHHHHHCTTCT----HHHHHHHHHHHTTSCHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHhCCCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHH---------------------------------
Confidence 777776665432221 2456666666667777777777776621
Q ss_pred ccchhhhHHHHHHhhhhhHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 048743 312 QIMPELLEKDSILKMEGKQELVLFRNGKLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDAL 390 (653)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 390 (653)
..| +..+|..+...+.+.|++++|...|+++.+.+ |.+...|..+...+
T Consensus 164 ----------------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~ 213 (388)
T 1w3b_A 164 ----------------------------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVL 213 (388)
T ss_dssp ----------------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred ----------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHH
Confidence 112 34466666667777777777777777776665 55555666666677
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccc
Q 048743 391 IQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASF 470 (653)
Q Consensus 391 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~ 470 (653)
...|++++|...|++..+.. +-+..++..+..+|.+.|++++|...|+++.+. .|+
T Consensus 214 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~--------------------- 269 (388)
T 1w3b_A 214 KEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPH--------------------- 269 (388)
T ss_dssp HTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSS---------------------
T ss_pred HHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC---------------------
Confidence 77777777777776665532 124566666666677777777777666666552 232
Q ss_pred cccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCH
Q 048743 471 TDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMY 550 (653)
Q Consensus 471 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 550 (653)
+..+|..+...|.+.|++++|++.|+++.+.. +.+..++..+...+...|++
T Consensus 270 ---------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 270 ---------------------------FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred ---------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCH
Confidence 45678899999999999999999999999863 55788999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH
Q 048743 551 RDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDK 608 (653)
Q Consensus 551 ~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 608 (653)
++|...++.+.+ -.+.+..++..+...|.+.|++++|.+.|+++.+ +.|+.
T Consensus 322 ~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~ 372 (388)
T 1w3b_A 322 EEAVRLYRKALE-----VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTF 372 (388)
T ss_dssp HHHHHHHHHHTT-----SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTC
T ss_pred HHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCC
Confidence 999999988851 1234678899999999999999999999999985 45653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.5e-18 Score=181.23 Aligned_cols=417 Identities=9% Similarity=-0.075 Sum_probs=235.4
Q ss_pred hHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHH
Q 048743 18 SREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLA 97 (653)
Q Consensus 18 ~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~ 97 (653)
....+...-..+.+.|++++|+..|+.+.+.. |++..|..+..++...|+ .++|...+.+..+..|. +...|.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~--~~~~~~ 77 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGD---LKKVVEMSTKALELKPD--YSKVLL 77 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCSC--CHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhh---HHHHHHHHHHHhccChH--HHHHHH
Confidence 34567778888999999999999999998854 788899999999999998 79999999998876654 678899
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccc-------------------------------
Q 048743 98 KLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTC------------------------------- 146 (653)
Q Consensus 98 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~------------------------------- 146 (653)
.+..+|.+.|++++|+..|+++.+.+. ++.......+...........
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE 156 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc
Confidence 999999999999999999999988762 343433333332222100000
Q ss_pred -cchHHHHHHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHh---cCChhhHHHHHHHHHh-----cCCCc-------
Q 048743 147 -LASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVR---FGSSLKGQHIMELMSQ-----TGVVA------- 210 (653)
Q Consensus 147 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~---~g~~~~a~~l~~~m~~-----~g~~p------- 210 (653)
......+ ....+.+..+...-.-..+.+...+..+...+.. .|++++|..+|+++.+ ..-.|
T Consensus 157 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (514)
T 2gw1_A 157 NLPSVTSM--ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234 (514)
T ss_dssp CCCCHHHH--HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHH
T ss_pred CCchhHHH--HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccCh
Confidence 0000000 0000000000000000001122333333333333 6777777777777766 21111
Q ss_pred -cHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhh
Q 048743 211 -DAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLR 289 (653)
Q Consensus 211 -~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 289 (653)
+..++..+...+...|++++|.+.++.+....+. ..++..+..+|...|++++|...+++..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------- 299 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-----VNSYIYMALIMADRNDSTEYYNYFDKALKL---------- 299 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc----------
Confidence 1223444455555555555555555554443211 224455555555555555555555554210
Q ss_pred hcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048743 290 QDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLS 369 (653)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 369 (653)
.+.+...|..+...+...|++++|...|++
T Consensus 300 --------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 300 --------------------------------------------------DSNNSSVYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp --------------------------------------------------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred --------------------------------------------------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 011223444455555555555555555555
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC
Q 048743 370 IKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN 449 (653)
Q Consensus 370 m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 449 (653)
..... +.+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++|...|+.+.+. .|+
T Consensus 330 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~ 404 (514)
T 2gw1_A 330 AKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENK 404 (514)
T ss_dssp HHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHT
T ss_pred HHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhc
Confidence 54443 3334445555555555555555555555554431 123344444555555555555555555544432 111
Q ss_pred chhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHc---CCCHHHHHHHH
Q 048743 450 LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST----IYKLNSSIYFFCK---GKMIGDALKIY 522 (653)
Q Consensus 450 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~y~~li~~~~~---~g~~~~a~~~~ 522 (653)
. |+ ...|..+...|.. .|++++|.+.|
T Consensus 405 ~----------------------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 405 L----------------------------------------------DGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp S----------------------------------------------SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred c----------------------------------------------chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 1 11 3367777777777 78888888888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 523 RRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 523 ~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
++..+.. +.+..++..+...+...|++++|...|+.+.
T Consensus 439 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 439 EKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8877643 2245666777777777788888877777765
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.84 E-value=9.8e-18 Score=174.65 Aligned_cols=313 Identities=12% Similarity=0.008 Sum_probs=212.2
Q ss_pred CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHH
Q 048743 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFY 253 (653)
Q Consensus 174 ~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (653)
+.+...|..+...+.+.|++++|.++|+++.+.. ..+..++..+..++...|++++|.+.++.+.+..+.. ..++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~ 97 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF----TAAR 97 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHH
Confidence 4567789999999999999999999999999763 3356778899999999999999999999998865433 3478
Q ss_pred HHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHH
Q 048743 254 ESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELV 333 (653)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (653)
..+..+|.+.|++++|...|+++.+
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~------------------------------------------------------- 122 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLK------------------------------------------------------- 122 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT-------------------------------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-------------------------------------------------------
Confidence 9999999999999999999999942
Q ss_pred HHhcCCCCCCH----HHHHH------------HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHH
Q 048743 334 LFRNGKLLHSN----RAMAK------------LINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLE 397 (653)
Q Consensus 334 ~~~~~~~~p~~----~~~~~------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 397 (653)
..|+. ..+.. +...+.+.|++++|...|+++.... |.+..++..+...|.+.|+++
T Consensus 123 ------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 194 (450)
T 2y4t_A 123 ------SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELRELRAECFIKEGEPR 194 (450)
T ss_dssp ------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGG
T ss_pred ------cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHH
Confidence 22222 23333 3455889999999999999999877 778888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhccccccccccc
Q 048743 398 AAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLM 477 (653)
Q Consensus 398 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 477 (653)
+|..+|+++.+.. +.+..+|..+..+|...|++++|...|+++.+. .|+..........+... .........+...
T Consensus 195 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 270 (450)
T 2y4t_A 195 KAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKL-NKLIESAEELIRD 270 (450)
T ss_dssp GGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH-HHHHHHHHHHHHc
Confidence 9999999997753 347889999999999999999999999999863 45542111110000000 0000001112234
Q ss_pred CCHHHHHHHHHHHHHccCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHH
Q 048743 478 DKSDLAESLIQEMREEAALST-----IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552 (653)
Q Consensus 478 ~~~~~a~~~~~~m~~~~~~p~-----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 552 (653)
|++++|...|+++.+.. |+ ..+|..+...+.+.|++++|++.++++.+.. +.+...|..+..+|...|++++
T Consensus 271 g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~ 347 (450)
T 2y4t_A 271 GRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDE 347 (450)
T ss_dssp TCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHH
Confidence 44455555554444422 22 2234444444444455555555444444331 1234444444444444445555
Q ss_pred HHHHHHHHH
Q 048743 553 ITILWGDIK 561 (653)
Q Consensus 553 a~~~~~~~~ 561 (653)
|...++.+.
T Consensus 348 A~~~~~~al 356 (450)
T 2y4t_A 348 AIQDYETAQ 356 (450)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.83 E-value=3.2e-17 Score=170.69 Aligned_cols=325 Identities=11% Similarity=-0.005 Sum_probs=256.0
Q ss_pred cccccccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCC
Q 048743 10 EKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKAD 89 (653)
Q Consensus 10 ~~l~~~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 89 (653)
..++.++.+...+..+...+.+.|++++|+.+|+.+.+. ...+...+..+...+...|+ .++|...|.++.+..+.
T Consensus 17 ~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~ 92 (450)
T 2y4t_A 17 NLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGK---SKAALPDLTKVIQLKMD 92 (450)
T ss_dssp ------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred ccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCC
Confidence 556677778899999999999999999999999998874 23356688889999999888 79999999998876654
Q ss_pred chhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCch----hHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhh
Q 048743 90 LLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSD----LLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAE 165 (653)
Q Consensus 90 ~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 165 (653)
+...+..+...|.+.|++++|.+.|+++.+. .|+.. .+..+.. .+.
T Consensus 93 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~------------------~~~-------- 142 (450)
T 2y4t_A 93 --FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIK------------------SDE-------- 142 (450)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHH------------------HHH--------
T ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHH------------------HHH--------
Confidence 6788999999999999999999999999875 34432 2222211 110
Q ss_pred hcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCc
Q 048743 166 KSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPF 245 (653)
Q Consensus 166 ~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 245 (653)
...+..+...+.+.|++++|.+.|+.+.+.. ..+..++..+..++.+.|++++|.+.++.+.+..+..
T Consensus 143 -----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 210 (450)
T 2y4t_A 143 -----------MQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210 (450)
T ss_dssp -----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC
T ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 1123345567888999999999999998763 3356678899999999999999999999987754322
Q ss_pred ccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHh
Q 048743 246 AHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILK 325 (653)
Q Consensus 246 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (653)
..++..+..+|...|++++|...|+++.+
T Consensus 211 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------------------------------- 239 (450)
T 2y4t_A 211 ----TEAFYKISTLYYQLGDHELSLSEVRECLK----------------------------------------------- 239 (450)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------------------
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------------------------------
Confidence 34799999999999999999999999842
Q ss_pred hhhhHHHHHHhcCCCCCCH-HHH------------HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----cccHHHHHH
Q 048743 326 MEGKQELVLFRNGKLLHSN-RAM------------AKLINGYKKHGKNSELSWLLLSIKKEHHSFGE----STLCSDVID 388 (653)
Q Consensus 326 ~~~~~~~~~~~~~~~~p~~-~~~------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~ 388 (653)
..|+. ..+ ..+...+.+.|++++|...|+++.... |.+ ...|..+..
T Consensus 240 --------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 240 --------------LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICH 303 (450)
T ss_dssp --------------HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHH
T ss_pred --------------hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHH
Confidence 11221 122 234788999999999999999998866 444 235888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 389 ALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 389 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
.+.+.|++++|...++++.+.. +.+..+|..+..+|...|++++|...|+...+ +.|+.
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~ 362 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNEND 362 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSC
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcch
Confidence 9999999999999999998753 34789999999999999999999999999987 45765
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.5e-17 Score=174.74 Aligned_cols=420 Identities=9% Similarity=-0.080 Sum_probs=293.9
Q ss_pred hHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHH
Q 048743 56 VVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVF 135 (653)
Q Consensus 56 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 135 (653)
.+-..-..+.+.|+ .++|...|.++.... |+...|..+..++.+.|++++|++.++++.+.+
T Consensus 8 ~~~~~g~~~~~~g~---~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------ 69 (514)
T 2gw1_A 8 ALKDKGNQFFRNKK---YDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK------------ 69 (514)
T ss_dssp HHHHHHHHHHHTSC---HHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHhcc---HHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC------------
Confidence 34445555666676 788888888887654 477788888888888888888888888876532
Q ss_pred HHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHH
Q 048743 136 VHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSI 215 (653)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~ 215 (653)
+.+..+|..+..+|.+.|++++|...|+.+.+.+ .++....
T Consensus 70 --------------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 110 (514)
T 2gw1_A 70 --------------------------------------PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASI 110 (514)
T ss_dssp --------------------------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGT
T ss_pred --------------------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchH
Confidence 2234566667777777777777777777777654 2233333
Q ss_pred HHHHHHHHhcCChhhhHHHHH-----------------------------------HhhhcCC-Cc-----ccchhHHHH
Q 048743 216 IILAQIHEMNCQRDELKKFKC-----------------------------------YIDQLST-PF-----AHHYQQFYE 254 (653)
Q Consensus 216 ~~ll~~~~~~g~~~~a~~~~~-----------------------------------~~~~~~~-~~-----~~~~~~~~~ 254 (653)
..++..+........+.+.+. .+..... +. ...+...+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (514)
T 2gw1_A 111 EPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKEL 190 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHH
Confidence 333333332222222222111 1111100 00 012233344
Q ss_pred HHHHhhh---ccCCHHHHHHHHHHhcc-----cCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhh
Q 048743 255 SLLSLHF---KFDDIDAAGELILDMNR-----YREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKM 326 (653)
Q Consensus 255 ~li~~~~---~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (653)
.+...+. +.|++++|..+|+++.+ .... |....
T Consensus 191 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~-------------------------------------- 231 (514)
T 2gw1_A 191 MNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN-NEDEK-------------------------------------- 231 (514)
T ss_dssp HHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS-TTCHH--------------------------------------
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC-ccccc--------------------------------------
Confidence 4444433 48999999999999876 3222 21110
Q ss_pred hhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 048743 327 EGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406 (653)
Q Consensus 327 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 406 (653)
..+.+..++..+...+...|++++|...|+++.... +. ..+|..+...+...|++++|...+++.
T Consensus 232 ------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 296 (514)
T 2gw1_A 232 ------------LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PR-VNSYIYMALIMADRNDSTEYYNYFDKA 296 (514)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred ------------cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cc-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 001234567888999999999999999999998877 44 777999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHH
Q 048743 407 ELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL 486 (653)
Q Consensus 407 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~ 486 (653)
.+.. +.+..+|..+...+...|++++|...|+...+. .|+........ ...|...|++++|...
T Consensus 297 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l-------------~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 297 LKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQL-------------ACLAYRENKFDDCETL 360 (514)
T ss_dssp HTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHH-------------HHHTTTTTCHHHHHHH
T ss_pred hhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHH-------------HHHHHHcCCHHHHHHH
Confidence 8753 346778999999999999999999999999874 34431111110 1235568999999999
Q ss_pred HHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHhc---cCCHHHHHHHH
Q 048743 487 IQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI-RPT----VETFYYLVYGHSS---LEMYRDITILW 557 (653)
Q Consensus 487 ~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~~~~---~~~~~~a~~~~ 557 (653)
++++.+.. | +..+|..+...|.+.|++++|++.|+++.+... .|+ ...+..+...+.. .|++++|...+
T Consensus 361 ~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 361 FSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp HHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred HHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 99988764 4 677899999999999999999999999987421 122 3488899999999 99999999999
Q ss_pred HHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhH
Q 048743 558 GDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611 (653)
Q Consensus 558 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 611 (653)
+.+.+. .+.+...+..+...|.+.|++++|.+.|++..+. .|+....
T Consensus 439 ~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~ 485 (514)
T 2gw1_A 439 EKASKL-----DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEK 485 (514)
T ss_dssp HHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHH
T ss_pred HHHHHh-----CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHH
Confidence 988743 2335778889999999999999999999999865 4654433
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=6e-16 Score=165.08 Aligned_cols=441 Identities=12% Similarity=-0.021 Sum_probs=270.2
Q ss_pred hHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHH
Q 048743 18 SREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLA 97 (653)
Q Consensus 18 ~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~ 97 (653)
....+......+.+.|++++|+..|+.+.+.. ..++..|..+...+...|+ .++|.+.+.+.....|. +..++.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~--~~~~~~ 97 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGD---LEKVIEFTTKALEIKPD--HSKALL 97 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT--CHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCc--hHHHHH
Confidence 45678888899999999999999999998842 2345688888899999888 79999999998876654 678899
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCch
Q 048743 98 KLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDT 177 (653)
Q Consensus 98 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 177 (653)
.+...+...|++++|+..|+.+ .....+.......++..... ... ...++.+..... ...+..
T Consensus 98 ~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------~~a---~~~~~~~l~~~~-~~~~~~ 160 (537)
T 3fp2_A 98 RRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLN------------KQA---MKVLNENLSKDE-GRGSQV 160 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHH------------HHH---HHHHHHHCC--------CC
T ss_pred HHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHH------------HHH---HHHHHHHHHhCc-cccccc
Confidence 9999999999999999999643 32211111111111110000 000 001111111100 001111
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHH-HHHHHHH--------hcCChhhhHHHHHHhhhcCCCcccc
Q 048743 178 MIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSII-ILAQIHE--------MNCQRDELKKFKCYIDQLSTPFAHH 248 (653)
Q Consensus 178 ~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~-~ll~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~~ 248 (653)
...+..+..+....+.+.+...+...... .|....+. .+...+. ..|++++|..+++.+.+..+.....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~ 238 (537)
T 3fp2_A 161 LPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238 (537)
T ss_dssp CCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHH
T ss_pred cchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchh
Confidence 12233344444555555554444332221 22211111 2221111 1246666777766666543322110
Q ss_pred ---hhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHh
Q 048743 249 ---YQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILK 325 (653)
Q Consensus 249 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (653)
...++..+...+...|++++|...|++..+
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----------------------------------------------- 271 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESIN----------------------------------------------- 271 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh-----------------------------------------------
Confidence 122466666777788888888888888732
Q ss_pred hhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 048743 326 MEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDD 405 (653)
Q Consensus 326 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 405 (653)
..|+...|..+...+...|++++|...|++..... |.+..+|..+...+...|++++|...|++
T Consensus 272 --------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 272 --------------LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp --------------HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 23556677778888888888888888888887776 66667788888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHH
Q 048743 406 MELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES 485 (653)
Q Consensus 406 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~ 485 (653)
..+.. +.+..+|..+...+...|++++|...|++..+. .|+
T Consensus 336 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~------------------------------------ 376 (537)
T 3fp2_A 336 AQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPT------------------------------------ 376 (537)
T ss_dssp HHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------------------------------------
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC------------------------------------
Confidence 87653 224567777888888888888888888877764 233
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHhcc----------CCH
Q 048743 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK-----IRPTVETFYYLVYGHSSL----------EMY 550 (653)
Q Consensus 486 ~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~----------~~~ 550 (653)
+...|..+...|...|++++|++.|++..+.. .......+..+...+... |++
T Consensus 377 ------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 444 (537)
T 3fp2_A 377 ------------LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444 (537)
T ss_dssp ------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH
T ss_pred ------------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH
Confidence 33455666666677777777777777766532 111112233334455555 777
Q ss_pred HHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 048743 551 RDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 551 ~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 602 (653)
++|...++.+.+. -+.+...|..+...|.+.|++++|.+.|++..+.
T Consensus 445 ~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 445 NAAIKLLTKACEL-----DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777777766532 1234566777777777777777777777777654
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.76 E-value=1.9e-14 Score=144.47 Aligned_cols=324 Identities=10% Similarity=0.002 Sum_probs=246.9
Q ss_pred chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHH
Q 048743 176 DTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYES 255 (653)
Q Consensus 176 ~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (653)
|+..+..+...+.+.|++++|.+.|+.+.+.. ..+..++..+..++...|++++|...++...+..+.. ..++..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF----TAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----chHHHH
Confidence 45677888899999999999999999998863 2345678889999999999999999999988764322 247899
Q ss_pred HHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHH
Q 048743 256 LLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLF 335 (653)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (653)
+..+|...|++++|...|++..+
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~--------------------------------------------------------- 99 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLK--------------------------------------------------------- 99 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHT---------------------------------------------------------
T ss_pred HHHHHHHcCChHHHHHHHHHHHh---------------------------------------------------------
Confidence 99999999999999999999842
Q ss_pred hcCCCCC---C-HHH------------HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHH
Q 048743 336 RNGKLLH---S-NRA------------MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAA 399 (653)
Q Consensus 336 ~~~~~~p---~-~~~------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a 399 (653)
..| + ... +..+...+...|++++|...++++.+.. |.+..++..+...+...|++++|
T Consensus 100 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A 173 (359)
T 3ieg_A 100 ----SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKA 173 (359)
T ss_dssp ----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ----cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHH
Confidence 112 1 111 2233578889999999999999999887 77778899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCC
Q 048743 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDK 479 (653)
Q Consensus 400 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 479 (653)
...+++..+.. +.+..++..+...+...|++++|...|+...+. .|+....
T Consensus 174 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~-------------------------- 224 (359)
T 3ieg_A 174 ISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRC-------------------------- 224 (359)
T ss_dssp HHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHH--------------------------
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHH--------------------------
Confidence 99999998763 457889999999999999999999999998874 3443111
Q ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHhccCCHHHHH
Q 048743 480 SDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV-----ETFYYLVYGHSSLEMYRDIT 554 (653)
Q Consensus 480 ~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----~t~~~li~~~~~~~~~~~a~ 554 (653)
...+..+. .......+...+.+.|++++|++.+++..+.. |+. ..+..+...+...|++++|.
T Consensus 225 ----~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 225 ----FAHYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp ----HHHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----HHHHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 11111111 11223345666788899999999999888753 332 23445677888899999999
Q ss_pred HHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048743 555 ILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEF 615 (653)
Q Consensus 555 ~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 615 (653)
..++...+. .+.+...|..+...+...|++++|.+.|++..+. .|+.......+
T Consensus 293 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l 346 (359)
T 3ieg_A 293 RICSEVLQM-----EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHH
T ss_pred HHHHHHHHh-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 999887632 2336778888888999999999999999998844 56644443333
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.75 E-value=1.9e-14 Score=153.37 Aligned_cols=435 Identities=7% Similarity=-0.062 Sum_probs=293.2
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCcc
Q 048743 92 QLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAE 171 (653)
Q Consensus 92 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 171 (653)
....|..+...+.+.|++++|+..|+++.+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------------------------------------ 55 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD------------------------------------------------ 55 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC------------------------------------------------
Confidence 56778888999999999999999999986641
Q ss_pred CCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhH
Q 048743 172 LIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQ 251 (653)
Q Consensus 172 ~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (653)
+.+...|..+..+|.+.|++++|.+.|++..+.+ ..+..++..+..++...|++++|.+.++.+...+..
T Consensus 56 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------- 125 (537)
T 3fp2_A 56 --PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDF------- 125 (537)
T ss_dssp --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC------------
T ss_pred --CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC-------
Confidence 2356678888899999999999999999998764 224556888889999999999999998744332211
Q ss_pred HHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHH
Q 048743 252 FYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQE 331 (653)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (653)
.+..+..+...+....|...++++........... .+................
T Consensus 126 -~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 126 -DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV--------------------------LPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCC-------CC--------------------------CCCHHHHHHHHHTSCHHH
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc--------------------------cchHhHHHHHHHhcChHH
Confidence 23334555666777889999988843210000000 000000000000000000
Q ss_pred HHHH--hcCCCCCCHHHHH-HHHHHHHh--------cCChHHHHHHHHHHHhcCCCCCCcc-------cHHHHHHHHHHc
Q 048743 332 LVLF--RNGKLLHSNRAMA-KLINGYKK--------HGKNSELSWLLLSIKKEHHSFGEST-------LCSDVIDALIQL 393 (653)
Q Consensus 332 ~~~~--~~~~~~p~~~~~~-~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~~li~~~~~~ 393 (653)
.... ......|....+. .+...+.. .|++++|..+|+++.+.. |.+.. +|..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhc
Confidence 0000 1111222222222 22222222 257899999999998876 55533 366667788889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhccccccc
Q 048743 394 GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDT 473 (653)
Q Consensus 394 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~ 473 (653)
|++++|...|++..+. .|+..+|..+...+...|++++|...|+...+. .|+........ . ..
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l---~----------~~ 319 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHR---G----------QM 319 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHH---H----------HH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHH---H----------HH
Confidence 9999999999999885 466888999999999999999999999999874 35432111111 0 12
Q ss_pred ccccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHH
Q 048743 474 SSLMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD 552 (653)
Q Consensus 474 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 552 (653)
|...|++++|...|++..+.. | +...|..+...|...|++++|++.|++..+.. +.+...+..+...+...|++++
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 345899999999999998865 4 67789999999999999999999999998863 3356688899999999999999
Q ss_pred HHHHHHHHHHHhhhCC-CccCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHhCCCCCCHHhHHHHH--HHhh
Q 048743 553 ITILWGDIKRNIESGV-LAVSRDLYETLLLNFLQG----------GYFERVMEVIGYMKKQNMYVDKLMYKSEF--LKHH 619 (653)
Q Consensus 553 a~~~~~~~~~~~~~~~-~~p~~~~y~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~p~~~t~~~l~--~~~~ 619 (653)
|...++.+.+...... .......+......+.+. |++++|...+++..+.. +.+...+..+. ....
T Consensus 397 A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~ 475 (537)
T 3fp2_A 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQM 475 (537)
T ss_dssp HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 9999999875533222 222333344555677777 99999999999998653 22334444443 5567
Q ss_pred hhhHHhhhhhHHHHH
Q 048743 620 KHLYRRLKVSNARTE 634 (653)
Q Consensus 620 ~~~~~~~~~~~~~~~ 634 (653)
|+.+.|.+..+...+
T Consensus 476 g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 476 EKIDEAIELFEDSAI 490 (537)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 889999888888887
No 14
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=183.24 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKE--HHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (653)
.|||++|++||+.|++++|.++|.+|.+. .+..||..|||+||++||+.|++++|.++|++|.+.|+.||.+|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 46667777777777777777666665432 1256666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCh-HHHHHHHHHHHHcCCcc
Q 048743 423 TAYYKVKMF-REAEALLKQMRKSCLVQ 448 (653)
Q Consensus 423 ~~~~~~~~~-~~a~~~~~~m~~~~~~p 448 (653)
+++++.|+. ++|.++|++|.+.|+.|
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~P 234 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKL 234 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCC
Confidence 666666653 45566666666555543
No 15
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=3.8e-18 Score=181.73 Aligned_cols=114 Identities=9% Similarity=0.048 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQE---MKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD 574 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~ 574 (653)
-..|||+||++||+.|++++|.++|.+|.+ .|+.||.+|||+||.+||+.|++++|.++|++|. +.|+.||..
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~----~~G~~PDvv 201 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK----DAGLTPDLL 201 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HTTCCCCHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH----HcCCCCcHH
Confidence 456899999999999999999999988764 5899999999999999999999999999998885 569999999
Q ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048743 575 LYETLLLNFLQGGY-FERVMEVIGYMKKQNMYVDKLMYKSEF 615 (653)
Q Consensus 575 ~y~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~l~ 615 (653)
|||++|.++|+.|+ .++|.++|++|.++|+.||..||++++
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll 243 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhccccc
Confidence 99999999999998 478999999999999999999999776
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.69 E-value=1.3e-13 Score=138.28 Aligned_cols=308 Identities=11% Similarity=0.011 Sum_probs=218.4
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCcc
Q 048743 92 QLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAE 171 (653)
Q Consensus 92 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 171 (653)
+...+..+...+.+.|++++|+..|+++.+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~------------------------------------------------ 33 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD------------------------------------------------ 33 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------------------------------------------------
Confidence 56677888889999999999999998876531
Q ss_pred CCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchh
Q 048743 172 LIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVA-DAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQ 250 (653)
Q Consensus 172 ~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (653)
+.+..+|..+...+...|++++|.+.|+.+.+. .| +...+..+..++...|++++|.+.++...+..+ ....+.
T Consensus 34 --p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 108 (359)
T 3ieg_A 34 --PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SEQEEK 108 (359)
T ss_dssp --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC-CHHHHH
T ss_pred --cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-cccChH
Confidence 223456666777778888888888888887765 34 445577777888888888888888887776542 000122
Q ss_pred HHHHHH------------HHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhh
Q 048743 251 QFYESL------------LSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELL 318 (653)
Q Consensus 251 ~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (653)
..+..+ ...+...|++++|..+|++..+.
T Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------------------------------- 149 (359)
T 3ieg_A 109 EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------------------------------------- 149 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------------------------------
Confidence 233333 57888999999999999998320
Q ss_pred HHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHH
Q 048743 319 EKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEA 398 (653)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 398 (653)
.+.+...+..+...+...|++++|...+++..... |.+..+|..+...+...|++++
T Consensus 150 ---------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 150 ---------------------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp ---------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHH
T ss_pred ---------------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Confidence 12345678899999999999999999999999877 7778889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH------------HHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhh
Q 048743 399 AHDILDDMELAGHPMDSTTYKS------------LLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADK 466 (653)
Q Consensus 399 a~~~~~~m~~~g~~p~~~~~~~------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~ 466 (653)
|...|++..+... .+...+.. +...+.+.|++++|...++...+. .|+............+
T Consensus 207 A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la---- 279 (359)
T 3ieg_A 207 SLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERIC---- 279 (359)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHH----
T ss_pred HHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHH----
Confidence 9999999987532 23443332 256688889999999999988874 3443111000000000
Q ss_pred cccccccccccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 048743 467 SASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528 (653)
Q Consensus 467 ~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 528 (653)
..|...|++++|...+++..+.. | +..+|..+...|...|++++|.+.|++..+.
T Consensus 280 -----~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 280 -----HCFSKDEKPVEAIRICSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp -----HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -----HHHHHccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 12334677777777777776643 4 5666777777777777777777777776654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.68 E-value=7e-14 Score=138.58 Aligned_cols=300 Identities=9% Similarity=-0.055 Sum_probs=220.0
Q ss_pred CCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHH
Q 048743 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQF 252 (653)
Q Consensus 173 ~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (653)
.+.+...+..+...+...|++++|.++|+++.+.. ..+...+..+..++...|+.++|...++.+.+..+.. ..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~ 92 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN----PVS 92 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS----THH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC----HHH
Confidence 45667788888999999999999999999998763 2233446667788888899999999988887764332 236
Q ss_pred HHHHHHhhhccC-CHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHH
Q 048743 253 YESLLSLHFKFD-DIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQE 331 (653)
Q Consensus 253 ~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (653)
+..+...+...| ++++|...|++..+
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~----------------------------------------------------- 119 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATT----------------------------------------------------- 119 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHT-----------------------------------------------------
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH-----------------------------------------------------
Confidence 888888888888 89999999988832
Q ss_pred HHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048743 332 LVLFRNGKLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG 410 (653)
Q Consensus 332 ~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 410 (653)
..| +...|..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...|++..+..
T Consensus 120 --------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 189 (330)
T 3hym_B 120 --------LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189 (330)
T ss_dssp --------TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred --------hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 112 34567888888999999999999999988877 6666668888889999999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHH
Q 048743 411 HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEM 490 (653)
Q Consensus 411 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m 490 (653)
+.+..++..+...+...|++++|...+++..+..-....
T Consensus 190 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------------------------------- 228 (330)
T 3hym_B 190 -PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN---------------------------------------- 228 (330)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC----------------------------------------
T ss_pred -CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc----------------------------------------
Confidence 346788888888999999999999998888763110000
Q ss_pred HHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCc
Q 048743 491 REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLA 570 (653)
Q Consensus 491 ~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 570 (653)
......+..+|..+...|...|++++|++.|++..+.. +.+...+..+...+...|++++|.+.++.+. .+.
T Consensus 229 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------~~~ 300 (330)
T 3hym_B 229 -EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL------GLR 300 (330)
T ss_dssp -SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT------TTC
T ss_pred -cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH------ccC
Confidence 00001245567778888888888888888888877653 2245677777788888888888888886654 344
Q ss_pred c-CHHHHHHHHHHH-HhCCCH
Q 048743 571 V-SRDLYETLLLNF-LQGGYF 589 (653)
Q Consensus 571 p-~~~~y~~li~~~-~~~g~~ 589 (653)
| +...+..+..++ ...|+.
T Consensus 301 p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 301 RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp SCCHHHHHHHHHHHHTTTTC-
T ss_pred CCchHHHHHHHHHHHHHhCch
Confidence 4 555666666666 344543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.68 E-value=3.8e-14 Score=140.54 Aligned_cols=308 Identities=10% Similarity=-0.082 Sum_probs=234.9
Q ss_pred cccccccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCC
Q 048743 10 EKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKAD 89 (653)
Q Consensus 10 ~~l~~~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 89 (653)
+.+...+.+...+......+...|++++|.++|+.+.+. ...+...+..+...+...|+ .++|...+.++.+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~ 88 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK-DPFHASCLPVHIGTLVELNK---ANELFYLSHKLVDLYPS 88 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTTTHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCChhhHHHHHHHHHHhhh---HHHHHHHHHHHHHhCcC
Confidence 444444556667888888889999999999999998874 22334566667777777887 78999999998776554
Q ss_pred chhHHHHHHHHHHHHhcC-CCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcC
Q 048743 90 LLQLDLLAKLSLSLARAQ-MPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSN 168 (653)
Q Consensus 90 ~~~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 168 (653)
+...+..+...+...| ++++|.+.|++..+..
T Consensus 89 --~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--------------------------------------------- 121 (330)
T 3hym_B 89 --NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--------------------------------------------- 121 (330)
T ss_dssp --STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC---------------------------------------------
T ss_pred --CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---------------------------------------------
Confidence 6678888889999999 8999999998876542
Q ss_pred CccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccc
Q 048743 169 GAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHH 248 (653)
Q Consensus 169 ~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 248 (653)
+.+...|..+...+...|++++|.+.|+...+.. ..+...+..+...+...|++++|.+.++...+..+..
T Consensus 122 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--- 192 (330)
T 3hym_B 122 -----KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED--- 192 (330)
T ss_dssp -----TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---
T ss_pred -----CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC---
Confidence 2245567888889999999999999999998764 2235667778899999999999999999988765332
Q ss_pred hhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhh
Q 048743 249 YQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEG 328 (653)
Q Consensus 249 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (653)
..++..+...|...|++++|...|++..+.....+
T Consensus 193 -~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------------------------------------- 227 (330)
T 3hym_B 193 -PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG-------------------------------------------- 227 (330)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS--------------------------------------------
T ss_pred -hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc--------------------------------------------
Confidence 34789999999999999999999998843110000
Q ss_pred hHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048743 329 KQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408 (653)
Q Consensus 329 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 408 (653)
..........+|..+...+.+.|++++|...+++..+.. +.+..+|..+...|.+.|++++|...|++..+
T Consensus 228 -------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 228 -------NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp -------CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred -------ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 001112345688899999999999999999999999887 77778899999999999999999999999876
Q ss_pred CCCCCCHHHHHHHHHHH-HHcCChH
Q 048743 409 AGHPMDSTTYKSLLTAY-YKVKMFR 432 (653)
Q Consensus 409 ~g~~p~~~~~~~li~~~-~~~~~~~ 432 (653)
.. +.+...+..+..++ ...|+.+
T Consensus 299 ~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 299 LR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred cC-CCchHHHHHHHHHHHHHhCchh
Confidence 53 33677777777777 3455543
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=3.5e-15 Score=147.70 Aligned_cols=250 Identities=12% Similarity=0.042 Sum_probs=90.4
Q ss_pred hccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCc
Q 048743 31 KNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPV 110 (653)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~ 110 (653)
+.|++++|.++++.+ +++.+|..+..++.+.|+ +++|++.|.+. +|..+|..++.++...|+++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~---~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM---VKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCC---HHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHH
Confidence 556677777777765 333477777777777776 67777777542 46667777777777777777
Q ss_pred hHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHhc
Q 048743 111 PASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRF 190 (653)
Q Consensus 111 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~ 190 (653)
+|+..++..++. .++..+.+.|+.+|.+.
T Consensus 79 eAi~yl~~ark~---------------------------------------------------~~~~~i~~~Li~~Y~Kl 107 (449)
T 1b89_A 79 ELVKYLQMARKK---------------------------------------------------ARESYVETELIFALAKT 107 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHh---------------------------------------------------CccchhHHHHHHHHHHh
Confidence 777755544332 12234455555555555
Q ss_pred CChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHH
Q 048743 191 GSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAG 270 (653)
Q Consensus 191 g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 270 (653)
|+++++.++++ .|+..+|..+...|...|.+++|...|..+. .|..|.+++.+.|++++|.
T Consensus 108 g~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------------n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 108 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------------NFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp -CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT------------CHHHHHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh------------hHHHHHHHHHHhccHHHHH
Confidence 65555555553 2555566666666666666666666665541 2788888888888888888
Q ss_pred HHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHH
Q 048743 271 ELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKL 350 (653)
Q Consensus 271 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 350 (653)
+.+.+. -++.+|..+
T Consensus 169 ea~~KA-----------------------------------------------------------------~~~~~Wk~v 183 (449)
T 1b89_A 169 DGARKA-----------------------------------------------------------------NSTRTWKEV 183 (449)
T ss_dssp HHHHHH-----------------------------------------------------------------TCHHHHHHH
T ss_pred HHHHHc-----------------------------------------------------------------CCchhHHHH
Confidence 888777 356678888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048743 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKM 430 (653)
Q Consensus 351 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 430 (653)
+.+|...|+++.|......+. ..+.-...++..|.+.|++++|..+++...... +-....|+-|--+|++-.
T Consensus 184 ~~aCv~~~ef~lA~~~~l~L~------~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~- 255 (449)
T 1b89_A 184 CFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK- 255 (449)
T ss_dssp HHHHHHTTCHHHHHHTTTTTT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHcCcHHHHHHHHHHHH------hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-
Confidence 888888888888855544322 122224467778888888888888888776543 345566666655665542
Q ss_pred hHHHHHHHH
Q 048743 431 FREAEALLK 439 (653)
Q Consensus 431 ~~~a~~~~~ 439 (653)
+++..+.++
T Consensus 256 p~k~~ehl~ 264 (449)
T 1b89_A 256 PQKMREHLE 264 (449)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.65 E-value=1.9e-14 Score=145.27 Aligned_cols=236 Identities=14% Similarity=0.026 Sum_probs=129.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH--
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS-- 420 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-- 420 (653)
+...|..+..++.+.|++++|...|+++.+.. |.+..++..+...|...|++++|...|+++.+.... +...+..
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 173 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAE 173 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 34456666666667777777777777666655 555566666666777777777777777766654321 1111111
Q ss_pred -------------HHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHH
Q 048743 421 -------------LLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLI 487 (653)
Q Consensus 421 -------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~ 487 (653)
.+..+...|++++|...|+++.+. .|+.....+... +. ..|...|++++|...|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~-l~----------~~~~~~g~~~~A~~~~ 240 (368)
T 1fch_A 174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCG-LG----------VLFNLSGEYDKAVDCF 240 (368)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHH-HH----------HHHHHTTCHHHHHHHH
T ss_pred HHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh--CcCcccHHHHHH-HH----------HHHHHcCCHHHHHHHH
Confidence 122333556666666666666553 233100000000 00 1122356666666666
Q ss_pred HHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhh
Q 048743 488 QEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566 (653)
Q Consensus 488 ~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 566 (653)
++..+.. | +..+|..+...|...|++++|++.|++..+.. +.+...+..+...+.+.|++++|...++.+.+....
T Consensus 241 ~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 241 TAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 6655543 3 45566666666666777777777776666542 223556666666666677777777666666533111
Q ss_pred CC------CccCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 048743 567 GV------LAVSRDLYETLLLNFLQGGYFERVMEVIG 597 (653)
Q Consensus 567 ~~------~~p~~~~y~~li~~~~~~g~~~~a~~~~~ 597 (653)
.. ......+|..+..+|...|++++|..+++
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 10 01124566666666666677666666554
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=1.6e-11 Score=128.91 Aligned_cols=404 Identities=9% Similarity=-0.045 Sum_probs=286.4
Q ss_pred hhHHHHHHHHHhccCCchhHHHHHHHHHHHHh----cCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccch
Q 048743 74 QKACDLVLKIQKGKADLLQLDLLAKLSLSLAR----AQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLAS 149 (653)
Q Consensus 74 ~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~ 149 (653)
..++..+.+.... + +...+..+-..|.. .+++++|+.+|++..+.|
T Consensus 24 ~~~~~~~~~~a~~-g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-------------------------- 73 (490)
T 2xm6_A 24 NVNLEQLKQKAES-G---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-------------------------- 73 (490)
T ss_dssp -CCHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------------------------
T ss_pred hHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--------------------------
Confidence 3445555554332 2 66677777777777 788888888887765543
Q ss_pred HHHHHHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHh-
Q 048743 150 NFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVR----FGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEM- 224 (653)
Q Consensus 150 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~- 224 (653)
+...+..|-..|.. .+++++|.+.|+...+.| +...+..+...+..
T Consensus 74 --------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g 124 (490)
T 2xm6_A 74 --------------------------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEG 124 (490)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred --------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 22334444555555 778888888888888765 44555566667776
Q ss_pred ---cCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhc----cCCHHHHHHHHHHhcccCCCCCCchhhhcccccch
Q 048743 225 ---NCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFK----FDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYL 297 (653)
Q Consensus 225 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 297 (653)
.++.++|.+.++.....+.+ ..+..|-..|.. .++.++|.+.|++..+
T Consensus 125 ~g~~~~~~~A~~~~~~a~~~~~~------~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~------------------- 179 (490)
T 2xm6_A 125 NGVKVDKAESVKWFRLAAEQGRD------SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE------------------- 179 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------------------
T ss_pred CCCCCCHHHHHHHHHHHHHCCCH------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-------------------
Confidence 77888888888888776532 246667777766 7899999999988721
Q ss_pred hccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 048743 298 ISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKK----HGKNSELSWLLLSIKKE 373 (653)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~ 373 (653)
. -+...+..+-..|.. .++.++|...|++..+.
T Consensus 180 ----------------------------------------~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 180 ----------------------------------------Q---GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS 216 (490)
T ss_dssp ----------------------------------------T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ----------------------------------------C---CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence 1 245566777777777 89999999999998876
Q ss_pred CCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcC
Q 048743 374 HHSFGESTLCSDVIDALIQ----LGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYK----VKMFREAEALLKQMRKSC 445 (653)
Q Consensus 374 ~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 445 (653)
+ +...+..+...|.. .+++++|..+|++..+.| +...+..+-..|.. .+++++|...|+...+.|
T Consensus 217 ~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~ 289 (490)
T 2xm6_A 217 G----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG 289 (490)
T ss_dssp T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT
T ss_pred C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5 34457778888876 789999999999988864 56677777777877 889999999999987764
Q ss_pred CccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCC---CHHHHHHHH
Q 048743 446 LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK---MIGDALKIY 522 (653)
Q Consensus 446 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g---~~~~a~~~~ 522 (653)
. |+..+.+ ..+.... ..+..++.++|...|++..+.| +...+..+-..|...| ++++|+++|
T Consensus 290 ~-~~a~~~L------g~~y~~~-----~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~ 354 (490)
T 2xm6_A 290 N-SDGQYYL------AHLYDKG-----AEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWF 354 (490)
T ss_dssp C-HHHHHHH------HHHHHHC-----BTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred C-HHHHHHH------HHHHHcC-----CCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 2 2211111 1111100 0122489999999999998876 4567777888887766 789999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHh----CCCHHHHHH
Q 048743 523 RRMQEMKIRPTVETFYYLVYGHSS----LEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ----GGYFERVME 594 (653)
Q Consensus 523 ~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~ 594 (653)
++..+.| +...+..|-..|.. .+++++|..+|+...+ .+ +...+..+-..|.. .++.++|..
T Consensus 355 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~----~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 355 RKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE----QG---LSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh----CC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9998864 66777888888887 8999999999988752 22 46678888888888 899999999
Q ss_pred HHHHHHhCCCC-C-CHHhHHHHHHHhhhhhHHhhhhhHHHHHHH
Q 048743 595 VIGYMKKQNMY-V-DKLMYKSEFLKHHKHLYRRLKVSNARTEAQ 636 (653)
Q Consensus 595 ~~~~m~~~g~~-p-~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~ 636 (653)
.|++..+.|.. | +......+-.....+...+...+...++..
T Consensus 425 ~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 425 WFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKY 468 (490)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 99999988754 3 222222222333455666666677776653
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.63 E-value=2.1e-11 Score=134.77 Aligned_cols=384 Identities=12% Similarity=0.094 Sum_probs=247.4
Q ss_pred ccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcC--CCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchh
Q 048743 15 EGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHG--IPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQ 92 (653)
Q Consensus 15 ~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 92 (653)
++-+++-....+++|...|.+.+|+++++.....+. ..+...-+.++.+..+. + ..+..+...+.. + .+
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D---~~Rv~eyI~kLd--~---~d 1051 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-D---RTRVMEYINRLD--N---YD 1051 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-C---hhhHHHHHHHhh--h---cc
Confidence 455666667788889999999999999999875311 12334567777777777 3 345555554431 1 11
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccC
Q 048743 93 LDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAEL 172 (653)
Q Consensus 93 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 172 (653)
..-+...+...|.+++|.++|++.... ....+. + ....++++.|.++.++.
T Consensus 1052 ---~~eIA~Iai~lglyEEAf~IYkKa~~~-----~~A~~V------------------L---ie~i~nldrAiE~Aerv 1102 (1630)
T 1xi4_A 1052 ---APDIANIAISNELFEEAFAIFRKFDVN-----TSAVQV------------------L---IEHIGNLDRAYEFAERC 1102 (1630)
T ss_pred ---HHHHHHHHHhCCCHHHHHHHHHHcCCH-----HHHHHH------------------H---HHHHhhHHHHHHHHHhc
Confidence 223667788899999999999885211 111111 1 11334556655555433
Q ss_pred CCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCC-CcccchhH
Q 048743 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLST-PFAHHYQQ 251 (653)
Q Consensus 173 ~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~ 251 (653)
-+..+|..+-.++.+.|++++|.+.|... -|...|.-++.+|.+.|+++++.+.+....+... +.+
T Consensus 1103 --n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~I----- 1169 (1630)
T 1xi4_A 1103 --NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV----- 1169 (1630)
T ss_pred --CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccc-----
Confidence 23567888889999999999999888553 3556677888999999999999998887766542 222
Q ss_pred HHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHH
Q 048743 252 FYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQE 331 (653)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (653)
.+.+..+|++.+++++...+. .
T Consensus 1170 -dt~LafaYAKl~rleele~fI-~-------------------------------------------------------- 1191 (1630)
T 1xi4_A 1170 -ETELIFALAKTNRLAELEEFI-N-------------------------------------------------------- 1191 (1630)
T ss_pred -cHHHHHHHHhhcCHHHHHHHH-h--------------------------------------------------------
Confidence 345888888888887543332 1
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048743 332 LVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGH 411 (653)
Q Consensus 332 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 411 (653)
.|+...|..+-..|...|++++|..+|.... .|..+...|++.|+++.|.+.+++.
T Consensus 1192 ---------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~----------ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1192 ---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred ---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh----------HHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 1344556667778888888888888888741 3888888888888888888888765
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHH
Q 048743 412 PMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491 (653)
Q Consensus 412 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 491 (653)
.+..+|..+-.+|...|++..|......+. ..|+....++ ..|.+.|.+++|..+++.-.
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~Ii---v~~deLeeli----------------~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADELEELI----------------NYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh---cCHHHHHHHH----------------HHHHHcCCHHHHHHHHHHHh
Confidence 256777777777877777777766554321 2233222111 12445788888888886655
Q ss_pred HccCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHhccCCHHHHH
Q 048743 492 EEAALSTIYKLNSSIYFFCKG--KMIGDALKIYRRMQEMKIRP------TVETFYYLVYGHSSLEMYRDIT 554 (653)
Q Consensus 492 ~~~~~p~~~~y~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p------~~~t~~~li~~~~~~~~~~~a~ 554 (653)
... .-....|+-|...|++. ++..+++++|..-. +++| +...|.-++-.|.+.|+++.|.
T Consensus 1308 ~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1308 GLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred ccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 433 11444565555555543 34555555555322 2222 4556777777777788877776
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.63 E-value=5.4e-14 Score=141.81 Aligned_cols=279 Identities=11% Similarity=-0.084 Sum_probs=188.7
Q ss_pred cCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchh
Q 048743 171 ELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQ 250 (653)
Q Consensus 171 ~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (653)
..+..+...|..+...+.+.|++++|.++|+.+.+.. ..+..++..+..++...|++++|.+.++......+.. .
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~ 133 (365)
T 4eqf_A 59 ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN----L 133 (365)
T ss_dssp SCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----H
T ss_pred CCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----H
Confidence 3334466779999999999999999999999999864 2356678999999999999999999999998765332 3
Q ss_pred HHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhH
Q 048743 251 QFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQ 330 (653)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (653)
.++..+..+|...|++++|...|+++.+.. | ....
T Consensus 134 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p-----------~~~~------------------------------- 168 (365)
T 4eqf_A 134 KALMALAVSYTNTSHQQDACEALKNWIKQN---P-----------KYKY------------------------------- 168 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---H-----------HHHC-------------------------------
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhC---c-----------cchH-------------------------------
Confidence 479999999999999999999999984210 0 0000
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048743 331 ELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG--ESTLCSDVIDALIQLGFLEAAHDILDDMEL 408 (653)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 408 (653)
...........+..+...+.+.|++++|...|+++.+.. |. +..+|..+...|.+.|++++|...|++..+
T Consensus 169 -----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 241 (365)
T 4eqf_A 169 -----LVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN--GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT 241 (365)
T ss_dssp -----C-------------------CCHHHHHHHHHHHHHHHHS--CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 000000112234456677778888888888888887776 44 566677777778888888888888877766
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHH
Q 048743 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQ 488 (653)
Q Consensus 409 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 488 (653)
.. +.+..+|..+..+|.+.|++++|...|++..+. .|+
T Consensus 242 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~--------------------------------------- 279 (365)
T 4eqf_A 242 VR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPG--------------------------------------- 279 (365)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---------------------------------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC---------------------------------------
Confidence 43 335667777777777777777777777776653 232
Q ss_pred HHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHhccCCHHHHHHHH
Q 048743 489 EMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR-----------PTVETFYYLVYGHSSLEMYRDITILW 557 (653)
Q Consensus 489 ~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----------p~~~t~~~li~~~~~~~~~~~a~~~~ 557 (653)
+..+|..+...|.+.|++++|.+.|++..+.... .+...|..+..++...|+.+.+..+.
T Consensus 280 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 280 ---------FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp ---------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ---------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 3455667777777777777777777777653110 02455666666666666666665554
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.63 E-value=4.3e-15 Score=147.05 Aligned_cols=283 Identities=14% Similarity=0.099 Sum_probs=125.5
Q ss_pred HHhhhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHH
Q 048743 157 DVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKC 236 (653)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 236 (653)
...|+++.|.+.+++...| .+|..|..++.+.|++++|.+.|.. .+|..+|..++.++...|++++|.+.++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3456789999999988655 4999999999999999999999965 3677899999999999999999999888
Q ss_pred HhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchh
Q 048743 237 YIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPE 316 (653)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (653)
...+.. ++..+.+.|+.+|.+.|+++++.++++
T Consensus 86 ~ark~~-----~~~~i~~~Li~~Y~Klg~l~e~e~f~~------------------------------------------ 118 (449)
T 1b89_A 86 MARKKA-----RESYVETELIFALAKTNRLAELEEFIN------------------------------------------ 118 (449)
T ss_dssp ----------------------------CHHHHTTTTT------------------------------------------
T ss_pred HHHHhC-----ccchhHHHHHHHHHHhCCHHHHHHHHc------------------------------------------
Confidence 776632 223468999999999999999876652
Q ss_pred hhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCH
Q 048743 317 LLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL 396 (653)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 396 (653)
.|+..+|..+...|...|++++|..+|..+ ..|..+..++.+.|++
T Consensus 119 ------------------------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 119 ------------------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEY 164 (449)
T ss_dssp ------------------------CC----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCH
T ss_pred ------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccH
Confidence 255668999999999999999999999977 2399999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccc
Q 048743 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSL 476 (653)
Q Consensus 397 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 476 (653)
++|.+.+.++ .++.+|..++.+|...|+++.|......+ .+.|+....+ ...|.+
T Consensus 165 q~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L---~~~ad~l~~l----------------v~~Yek 219 (449)
T 1b89_A 165 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI---VVHADELEEL----------------INYYQD 219 (449)
T ss_dssp HHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT---TTCHHHHHHH----------------HHHHHH
T ss_pred HHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH---HhCHhhHHHH----------------HHHHHH
Confidence 9999999988 27999999999999999999995544332 1334431111 123567
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHhccC
Q 048743 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGK--MIGDALKIYRRMQEMKIRP------TVETFYYLVYGHSSLE 548 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p------~~~t~~~li~~~~~~~ 548 (653)
.|++++|..+++...... .-....|+-|--.|++.+ ++.+.+++|.. +.+++| +...|.-+.-.|...+
T Consensus 220 ~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 220 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999887554 236777888887787653 44555555442 233444 4566777888888888
Q ss_pred CHHHHHHH
Q 048743 549 MYRDITIL 556 (653)
Q Consensus 549 ~~~~a~~~ 556 (653)
+++.|...
T Consensus 297 e~d~A~~t 304 (449)
T 1b89_A 297 EYDNAIIT 304 (449)
T ss_dssp CHHHHHHH
T ss_pred hHHHHHHH
Confidence 88877653
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.63 E-value=5.9e-14 Score=141.62 Aligned_cols=282 Identities=12% Similarity=-0.039 Sum_probs=203.0
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHH
Q 048743 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYE 254 (653)
Q Consensus 175 ~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (653)
.+...+..+...+.+.|++++|...|+++.+.. ..+..++..+..++.+.|++++|.+.++...+..+. +..++.
T Consensus 62 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~ 136 (368)
T 1fch_A 62 RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD----NQTALM 136 (368)
T ss_dssp TTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHH
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC----CHHHHH
Confidence 356778899999999999999999999999863 335566889999999999999999999998876533 234789
Q ss_pred HHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHH
Q 048743 255 SLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVL 334 (653)
Q Consensus 255 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (653)
.+..+|...|++++|...|+++.+.....+... ... +.
T Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------~~~---~~------------------------- 174 (368)
T 1fch_A 137 ALAVSFTNESLQRQACEILRDWLRYTPAYAHLV--------------TPA---EE------------------------- 174 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGC--------------C--------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH--------------HHH---HH-------------------------
Confidence 999999999999999999999854211000000 000 00
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 048743 335 FRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG--ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHP 412 (653)
Q Consensus 335 ~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 412 (653)
......+.. .+. .+..+...|++++|...|+++.+.. |. +..++..+...|.+.|++++|...|++..+.. +
T Consensus 175 -~~~~~~~~~-~~~-~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~ 248 (368)
T 1fch_A 175 -GAGGAGLGP-SKR-ILGSLLSDSLFLEVKELFLAAVRLD--PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-P 248 (368)
T ss_dssp -------------C-TTHHHHHHHHHHHHHHHHHHHHHHS--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred -HhhhhcccH-HHH-HHHHHhhcccHHHHHHHHHHHHHhC--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 000000110 111 2333337788888888888888776 44 56678888888888888888888888887653 3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHH
Q 048743 413 MDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE 492 (653)
Q Consensus 413 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 492 (653)
.+..+|..+...+.+.|++++|...|++..+. .|+
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~------------------------------------------- 283 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPG------------------------------------------- 283 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-------------------------------------------
Confidence 35778888888888888888888888887663 233
Q ss_pred ccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC----------CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 048743 493 EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP----------TVETFYYLVYGHSSLEMYRDITILWGD 559 (653)
Q Consensus 493 ~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----------~~~t~~~li~~~~~~~~~~~a~~~~~~ 559 (653)
+..+|..+...|.+.|++++|.+.|++..+..... ...+|..+..++...|+.++|..++..
T Consensus 284 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 284 -----YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred -----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 45567778888888888888888888877632111 156788888888888888888877753
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=2.4e-11 Score=128.96 Aligned_cols=219 Identities=11% Similarity=0.048 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048743 361 SELSWLLLSIKKEHHSFGESTLCSDVIDALIQ-------LGFLE-------AAHDILDDMELAGHPMDSTTYKSLLTAYY 426 (653)
Q Consensus 361 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (653)
+++..+|++..... |.+...|..+...+.+ .|+++ +|..+|++..+.-.+-+...|..+...+.
T Consensus 255 ~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 36778888888776 7777778888888876 68876 88999998876323446888889999999
Q ss_pred HcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHHHHHH
Q 048743 427 KVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKLNSS 505 (653)
Q Consensus 427 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~l 505 (653)
+.|++++|..+|+...+ +.|+... .+...... .+.+.|+.+.|..+|++..+.. | +...|-..
T Consensus 333 ~~g~~~~A~~~~~~al~--~~p~~~~-~~~~~~~~-----------~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~ 396 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLA--IEDIDPT-LVYIQYMK-----------FARRAEGIKSGRMIFKKAREDA--RTRHHVYVTA 396 (530)
T ss_dssp HTTCHHHHHHHHHHHHH--SSSSCHH-HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHH
T ss_pred hcCCHHHHHHHHHHHhC--ccccCch-HHHHHHHH-----------HHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHH
Confidence 99999999999999987 3454311 11111100 1123567888888888777642 3 22223222
Q ss_pred HHH-HHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc--CHHHHHHHHHH
Q 048743 506 IYF-FCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV--SRDLYETLLLN 582 (653)
Q Consensus 506 i~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p--~~~~y~~li~~ 582 (653)
... +...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|+.... .....| ....|...+..
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~---~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT---SGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH---SCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh---ccCCCHHHHHHHHHHHHHH
Confidence 211 235788888888888877642 22466777888888888888888888877652 222233 35577777777
Q ss_pred HHhCCCHHHHHHHHHHHHh
Q 048743 583 FLQGGYFERVMEVIGYMKK 601 (653)
Q Consensus 583 ~~~~g~~~~a~~~~~~m~~ 601 (653)
....|+.+.+..+++++.+
T Consensus 473 e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7778888888888877764
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.60 E-value=6.3e-14 Score=141.31 Aligned_cols=234 Identities=10% Similarity=-0.024 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---------CC
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHP---------MD 414 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---------p~ 414 (653)
..+|..+...+.+.|++++|...|++..+.. |.+..+|..+...|.+.|++++|...|+++.+.... ..
T Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 176 (365)
T 4eqf_A 99 AEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS 176 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccc
Confidence 3445555555555555656665555555544 444455555555555566666666655555442100 00
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC--c-hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHH
Q 048743 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN--L-SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491 (653)
Q Consensus 415 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 491 (653)
...+..+...+.+.|++++|...|+++.+. .|+ . .....+. ..|...|++++|...|++..
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~--------------~~~~~~g~~~~A~~~~~~al 240 (365)
T 4eqf_A 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLG--------------VLFHLSGEFNRAIDAFNAAL 240 (365)
T ss_dssp ------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHH--------------HHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHH--------------HHHHHCCCHHHHHHHHHHHH
Confidence 122233355555566666666666666553 232 1 0000000 11223556666666666555
Q ss_pred HccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCC-
Q 048743 492 EEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVL- 569 (653)
Q Consensus 492 ~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 569 (653)
+.. | +..+|+.+...|...|++++|++.|++..+.. +.+..++..+..+|...|++++|...++.+.+......-
T Consensus 241 ~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 317 (365)
T 4eqf_A 241 TVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317 (365)
T ss_dssp HHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC
Confidence 443 3 67789999999999999999999999998853 234778899999999999999999999988755322111
Q ss_pred ------ccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 048743 570 ------AVSRDLYETLLLNFLQGGYFERVMEVIGY 598 (653)
Q Consensus 570 ------~p~~~~y~~li~~~~~~g~~~~a~~~~~~ 598 (653)
..+...|..+..++...|+.+.+.++.++
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 318 QQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp ---------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 11357788999999999999888877654
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=2.2e-13 Score=134.83 Aligned_cols=280 Identities=9% Similarity=-0.078 Sum_probs=190.3
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHH
Q 048743 175 PDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYE 254 (653)
Q Consensus 175 ~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (653)
.+...|..+...+.+.|++++|..+|+++.+.. ..+...+..+..++...|++++|.+.++.+.+..+.. ..++.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~ 93 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHA 93 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC----HHHHH
Confidence 355677888899999999999999999998864 2355668889999999999999999999988765332 34688
Q ss_pred HHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHH
Q 048743 255 SLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVL 334 (653)
Q Consensus 255 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (653)
.+...|...|++++|.+.+++..+.....+....
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---------------------------------------------- 127 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQYEQLGS---------------------------------------------- 127 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHH----------------------------------------------
Confidence 9999999999999999999998432110000000
Q ss_pred HhcCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 048743 335 FRNGKLLHSNRAMAKLIN--GYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHP 412 (653)
Q Consensus 335 ~~~~~~~p~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 412 (653)
......|+......+.. .+...|++++|...++++.+.. +.+..++..+...|.+.|++++|...+++..+.. +
T Consensus 128 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~ 203 (327)
T 3cv0_A 128 -VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-P 203 (327)
T ss_dssp -------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred -HHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C
Confidence 00000111111111212 2556677788888888877766 5566667777777777888888888887776643 2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHH
Q 048743 413 MDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE 492 (653)
Q Consensus 413 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 492 (653)
.+..+|..+...+...|++++|...|++..+. .|+
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~------------------------------------------- 238 (327)
T 3cv0_A 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPG------------------------------------------- 238 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------------------------------------------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-------------------------------------------
Confidence 35666777777777777777777777776553 232
Q ss_pred ccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 048743 493 EAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP-----------TVETFYYLVYGHSSLEMYRDITILWGD 559 (653)
Q Consensus 493 ~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------~~~t~~~li~~~~~~~~~~~a~~~~~~ 559 (653)
+..+|..+...|...|++++|.+.|++..+..... +..++..+..++...|+.++|..+++.
T Consensus 239 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 239 -----YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred -----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34456677777788888888888888777642221 355667777777777777777777653
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=3.5e-11 Score=127.66 Aligned_cols=422 Identities=9% Similarity=-0.008 Sum_probs=261.3
Q ss_pred cccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCc-hhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchh
Q 048743 14 WEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPER-HVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQ 92 (653)
Q Consensus 14 ~~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 92 (653)
.++-+..++..++. +.+.|+++.|..+|+.+.+. .|.. ..|..++....+.|+ .++|..+|.+..... |+
T Consensus 8 ~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~---~~~a~~~~~ral~~~---p~ 78 (530)
T 2ooe_A 8 ENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKN---YDKVEKLFQRCLMKV---LH 78 (530)
T ss_dssp HCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTTC---CC
T ss_pred hCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CC
Confidence 34446677878777 47788999999999998773 4544 467788888877777 788999998886654 45
Q ss_pred HHHHHHHHHHH-HhcCCCchHHH----HHHHHHcC-ccCCCc-hhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhh
Q 048743 93 LDLLAKLSLSL-ARAQMPVPASM----ILRLMLGR-ENLPCS-DLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAE 165 (653)
Q Consensus 93 ~~t~~~li~~~-~~~g~~~~a~~----~~~~m~~~-g~~p~~-~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 165 (653)
...|...+... ...|+++.|.+ +|++..+. |..|+. ..|...+....... .
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~-~--------------------- 136 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVE-A--------------------- 136 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSC-C---------------------
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCC-C---------------------
Confidence 55666666433 34677777765 55555432 444432 23332222111000 0
Q ss_pred hcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHH-------------HhcCChhhhH
Q 048743 166 KSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIH-------------EMNCQRDELK 232 (653)
Q Consensus 166 ~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~-------------~~~g~~~~a~ 232 (653)
.. .+.+.|+++.|..+|++..+....+....|....... .+.+++..|.
T Consensus 137 -----------~~-------~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~ 198 (530)
T 2ooe_A 137 -----------VG-------SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNAR 198 (530)
T ss_dssp -----------CS-------STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred -----------cc-------cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHH
Confidence 00 0112445555555555554410000011121111100 1233445555
Q ss_pred HHHHHhhh------cCCCcccc--------hhHHHHHHHHhhhc----cCCH----HHHHHHHHHhcccCCCCCCchhhh
Q 048743 233 KFKCYIDQ------LSTPFAHH--------YQQFYESLLSLHFK----FDDI----DAAGELILDMNRYREPLPNPKLRQ 290 (653)
Q Consensus 233 ~~~~~~~~------~~~~~~~~--------~~~~~~~li~~~~~----~g~~----~~A~~~~~~m~~~~~~~~~~~~~~ 290 (653)
.+++.+.. ...+.+.+ ....|...+..-.. .++. ..|..+|++...
T Consensus 199 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~------------ 266 (530)
T 2ooe_A 199 RVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL------------ 266 (530)
T ss_dssp HHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH------------
Confidence 54443211 00000111 11234444322211 1222 244455555521
Q ss_pred cccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHh-------cCChH--
Q 048743 291 DAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKK-------HGKNS-- 361 (653)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-------~~~~~-- 361 (653)
. .+-+...|......+.+ .|+++
T Consensus 267 ----------------------------------------------~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a 298 (530)
T 2ooe_A 267 ----------------------------------------------V--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298 (530)
T ss_dssp ----------------------------------------------H--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred ----------------------------------------------h--CCCCHHHHHHHHHHHHHhchhhhhccchhhh
Confidence 0 12245677777777765 79987
Q ss_pred -----HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHHcCChHHH
Q 048743 362 -----ELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMD-S-TTYKSLLTAYYKVKMFREA 434 (653)
Q Consensus 362 -----~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~-~~~~~li~~~~~~~~~~~a 434 (653)
+|..+|++..+.- .|.+...|..+...+.+.|++++|..+|++..+. .|+ . ..|...+..+.+.|++++|
T Consensus 299 ~~~~~~A~~~~~~Al~~~-~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 299 KLFSDEAANIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHHHHHHHHHHHHTTTT-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHH
Confidence 8999999988621 2667778999999999999999999999999985 444 3 5899999999999999999
Q ss_pred HHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCC
Q 048743 435 EALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGK 513 (653)
Q Consensus 435 ~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g 513 (653)
..+|+...+. .|......+ ...... |...|+.+.|..+|+...+.. | +...|..++..+.+.|
T Consensus 376 ~~~~~~Al~~--~~~~~~~~~-~~a~~~-----------~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 376 RMIFKKARED--ARTRHHVYV-TAALME-----------YYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLN 439 (530)
T ss_dssp HHHHHHHHTC--TTCCTHHHH-HHHHHH-----------HHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhc--cCCchHHHH-HHHHHH-----------HHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCC
Confidence 9999999874 343211111 111111 123799999999999888754 5 6889999999999999
Q ss_pred CHHHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 048743 514 MIGDALKIYRRMQEMK-IRPT--VETFYYLVYGHSSLEMYRDITILWGDIKRN 563 (653)
Q Consensus 514 ~~~~a~~~~~~m~~~g-~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~~~~~ 563 (653)
+.++|..+|++....+ ..|+ ...|...+.-....|+.+.+..+...+.+.
T Consensus 440 ~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 440 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999998863 2333 346777788888899999999999887644
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.59 E-value=9.7e-13 Score=127.40 Aligned_cols=199 Identities=14% Similarity=0.049 Sum_probs=134.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048743 342 HSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSL 421 (653)
Q Consensus 342 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 421 (653)
|+..++..+...+...++.++|.+.++++...+..|.+...+..+...+.+.|++++|++.+++ +.+...+..+
T Consensus 63 ~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l 136 (291)
T 3mkr_A 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMT 136 (291)
T ss_dssp HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHH
Confidence 4455667777778888888888888888776542355666566777888888888888888876 4577788888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHH
Q 048743 422 LTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYK 501 (653)
Q Consensus 422 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 501 (653)
...|.+.|++++|...|+.+.+. .|+.....+....+. + +...|++++|..+|+++.+.. +.+...
T Consensus 137 ~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~-l----------~~~~~~~~eA~~~~~~~l~~~-p~~~~~ 202 (291)
T 3mkr_A 137 VQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVS-L----------AAGGEKLQDAYYIFQEMADKC-SPTLLL 202 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH-H----------HHCTTHHHHHHHHHHHHHHHS-CCCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHH-H----------HhCchHHHHHHHHHHHHHHhC-CCcHHH
Confidence 88888888888888888888775 355421111110000 0 112466777777777777652 236677
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHH
Q 048743 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD-ITILWGDIK 561 (653)
Q Consensus 502 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~-a~~~~~~~~ 561 (653)
|+.+..++.+.|++++|++.|++..+.. +-+..++..++..+...|+.++ +.++++.+.
T Consensus 203 ~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 203 LNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7777777777777777777777777642 2245667777777777777755 456776665
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.57 E-value=6.9e-13 Score=128.45 Aligned_cols=215 Identities=10% Similarity=0.032 Sum_probs=171.0
Q ss_pred hhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcCChhhhHHHHHHhh
Q 048743 161 HLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS-IIILAQIHEMNCQRDELKKFKCYID 239 (653)
Q Consensus 161 ~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (653)
+++.|...++..-+|+..++..+...+...|+.++|++.++++...++.|+... +..+...+...|++++|.+.++.
T Consensus 49 ~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-- 126 (291)
T 3mkr_A 49 KYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-- 126 (291)
T ss_dssp CHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--
T ss_pred CHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--
Confidence 344444333333456778888899999999999999999999998877787665 55667889999999999999987
Q ss_pred hcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhH
Q 048743 240 QLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLE 319 (653)
Q Consensus 240 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (653)
..+..++..+...|.+.|++++|.+.|+++.+
T Consensus 127 -------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~----------------------------------------- 158 (291)
T 3mkr_A 127 -------GDSLECMAMTVQILLKLDRLDLARKELKKMQD----------------------------------------- 158 (291)
T ss_dssp -------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------------
T ss_pred -------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----------------------------------------
Confidence 12334688999999999999999999999942
Q ss_pred HHHHHhhhhhHHHHHHhcCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCH
Q 048743 320 KDSILKMEGKQELVLFRNGKLLHSNRAM---AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL 396 (653)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 396 (653)
..|+.... ..++..+...|++++|..+|+++.+.. |.+...|+.+..++.+.|++
T Consensus 159 --------------------~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 159 --------------------QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp --------------------HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCH
T ss_pred --------------------hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCH
Confidence 12433211 223344456699999999999999987 88888899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHHcCCccCc
Q 048743 397 EAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE-AEALLKQMRKSCLVQNL 450 (653)
Q Consensus 397 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~~~p~~ 450 (653)
++|...|++..+.. +-+..++..++..+...|+.++ +..+++++.+ +.|+.
T Consensus 217 ~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~ 268 (291)
T 3mkr_A 217 EAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSH 268 (291)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCC
Confidence 99999999988754 3478899999999999999976 6789999887 45764
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.56 E-value=9.4e-13 Score=130.21 Aligned_cols=234 Identities=13% Similarity=-0.001 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSL--- 421 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l--- 421 (653)
..+..+...+...|++++|...++++.+.. |.+..++..+...|...|++++|...+++..+... .+...+..+
T Consensus 56 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 132 (327)
T 3cv0_A 56 EAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQA 132 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTTTC-------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHH
Confidence 344445555555555555555555555444 44444455555555555555555555555544321 111111111
Q ss_pred -----------HH-HHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHH
Q 048743 422 -----------LT-AYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQE 489 (653)
Q Consensus 422 -----------i~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 489 (653)
.. .+...|++++|...++++.+. .|+........ . ..|...|++++|...+++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l---a----------~~~~~~~~~~~A~~~~~~ 197 (327)
T 3cv0_A 133 DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHASL---G----------VLYNLSNNYDSAAANLRR 197 (327)
T ss_dssp -------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHH---H----------HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHH---H----------HHHHHhccHHHHHHHHHH
Confidence 11 244555666666666665543 23221000000 0 112235666666666666
Q ss_pred HHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCC
Q 048743 490 MREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568 (653)
Q Consensus 490 m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 568 (653)
..+.. | +..+|..+...|...|++++|++.|++..+.. +.+..++..+...+...|++++|.+.++.+.+......
T Consensus 198 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 274 (327)
T 3cv0_A 198 AVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGT 274 (327)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccc
Confidence 55443 3 56788899999999999999999999998753 33577888999999999999999999998875422110
Q ss_pred C-------ccCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 048743 569 L-------AVSRDLYETLLLNFLQGGYFERVMEVIGYM 599 (653)
Q Consensus 569 ~-------~p~~~~y~~li~~~~~~g~~~~a~~~~~~m 599 (653)
. ..+...|..+..++.+.|++++|..++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 275 TPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp C-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 0 004678889999999999999999988643
No 33
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.53 E-value=3.1e-10 Score=119.09 Aligned_cols=46 Identities=15% Similarity=0.027 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHhccCCchhHHHHHHHHHHHHh----cCCCchHHHHHHHHHcC
Q 048743 73 LQKACDLVLKIQKGKADLLQLDLLAKLSLSLAR----AQMPVPASMILRLMLGR 122 (653)
Q Consensus 73 ~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~ 122 (653)
.++|+..|.+.... + +...+..|-..|.. .+++++|+++|++..+.
T Consensus 59 ~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 108 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK 108 (490)
T ss_dssp HHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 56677777665443 2 44556666666666 66777777777766554
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.50 E-value=5e-10 Score=123.98 Aligned_cols=322 Identities=13% Similarity=0.117 Sum_probs=214.4
Q ss_pred CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhH
Q 048743 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGV--VADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQ 251 (653)
Q Consensus 174 ~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (653)
.|+.+ ...+++|...|++.+|+++++...-.+- .-+...-+.++.+..+. +..+..+....+....
T Consensus 984 ~PeeV--s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d--------- 1051 (1630)
T 1xi4_A 984 DPEEV--SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD--------- 1051 (1630)
T ss_pred CHHHh--HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---------
Confidence 44444 5578899999999999999999884321 01223344555555555 5566666655554322
Q ss_pred HHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHH
Q 048743 252 FYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQE 331 (653)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (653)
...+-..+...|.+++|..+|++... ......++.+ .......
T Consensus 1052 -~~eIA~Iai~lglyEEAf~IYkKa~~----------------------------~~~A~~VLie--------~i~nldr 1094 (1630)
T 1xi4_A 1052 -APDIANIAISNELFEEAFAIFRKFDV----------------------------NTSAVQVLIE--------HIGNLDR 1094 (1630)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHcCC----------------------------HHHHHHHHHH--------HHhhHHH
Confidence 23455666778999999999988710 0000000000 0000000
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048743 332 LVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGH 411 (653)
Q Consensus 332 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 411 (653)
-..... ++ -+..+|..+-.++...|++++|...|.+. .+...|..++.++.+.|++++|.+.|....+..
T Consensus 1095 AiE~Ae-rv-n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~- 1164 (1630)
T 1xi4_A 1095 AYEFAE-RC-NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA- 1164 (1630)
T ss_pred HHHHHH-hc-CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-
Confidence 000000 11 33568889999999999999999998653 345558889999999999999999998766654
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHH
Q 048743 412 PMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491 (653)
Q Consensus 412 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 491 (653)
++....+.+..+|++.+++++...+. + .|+.. -.. .+. +.+...|++++|..+|...
T Consensus 1165 -~e~~Idt~LafaYAKl~rleele~fI----~---~~n~a--d~~--~iG----------d~le~eg~YeeA~~~Y~kA- 1221 (1630)
T 1xi4_A 1165 -RESYVETELIFALAKTNRLAELEEFI----N---GPNNA--HIQ--QVG----------DRCYDEKMYDAAKLLYNNV- 1221 (1630)
T ss_pred -ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHH--HHH--HHH----------HHHHhcCCHHHHHHHHHhh-
Confidence 33333445888899998888644442 1 12210 000 011 2234589999999999885
Q ss_pred HccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc
Q 048743 492 EEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV 571 (653)
Q Consensus 492 ~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p 571 (653)
..|..+..+|++.|++++|.+.+++. -+..+|..+-.+|...|++..|..... ++..
T Consensus 1222 --------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl---------~Iiv 1278 (1630)
T 1xi4_A 1222 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL---------HIVV 1278 (1630)
T ss_pred --------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHH---------hhhc
Confidence 36899999999999999999999875 366888888889999999888877653 2445
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 572 SRDLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 572 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
+...+..++.-|.+.|.+++|+.+++.-.
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56678889999999999999999997765
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=1.3e-10 Score=121.31 Aligned_cols=276 Identities=8% Similarity=-0.060 Sum_probs=166.9
Q ss_pred chhHHHHHHHhhccCCcchhhhHHHHHHHHHhc----cC---CchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCC
Q 048743 54 RHVVNRFITDLCYSAEPHWLQKACDLVLKIQKG----KA---DLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLP 126 (653)
Q Consensus 54 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~---~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 126 (653)
...||.+-..+...|+ .++|++.|++..+. .+ ..-...+|+.+...|...|++++|...+++..+...
T Consensus 51 a~~yn~Lg~~~~~~G~---~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~-- 125 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQ---NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE-- 125 (472)
T ss_dssp CHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH--
Confidence 4578888888888888 68888888765331 11 112467899999999999999999999987654210
Q ss_pred CchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCC-chhhHHHHHHHHHhc--CChhhHHHHHHHH
Q 048743 127 CSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKP-DTMIFNLVLHACVRF--GSSLKGQHIMELM 203 (653)
Q Consensus 127 ~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~yn~li~~~~~~--g~~~~a~~l~~~m 203 (653)
.. . ....+ ...+|+.+-.++.+. +++++|.+.|++.
T Consensus 126 ----------------------------------~~------~-~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~ka 164 (472)
T 4g1t_A 126 ----------------------------------KF------S-SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKA 164 (472)
T ss_dssp ----------------------------------HS------C-CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred ----------------------------------hc------c-cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 00 0 00111 234455554455543 4688999999988
Q ss_pred HhcCCCccHHH-HHHH---HHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHH----HhhhccCCHHHHHHHHHH
Q 048743 204 SQTGVVADAHS-IIIL---AQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLL----SLHFKFDDIDAAGELILD 275 (653)
Q Consensus 204 ~~~g~~p~~~t-~~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~ 275 (653)
.+. .|+... +..+ ...+...++.++|.+.++...+..+.... ++..+. ..+...|+.++|.+++++
T Consensus 165 l~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~----~~~~l~~~~~~~~~~~~~~~~a~~~~~~ 238 (472)
T 4g1t_A 165 LEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY----LKVLLALKLHKMREEGEEEGEGEKLVEE 238 (472)
T ss_dssp HHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH----HHHHHHHHHHHCC------CHHHHHHHH
T ss_pred HHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH----HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 765 455433 2222 23344567777788777776665433222 333333 333445777888888887
Q ss_pred hcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 048743 276 MNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYK 355 (653)
Q Consensus 276 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 355 (653)
... .-+.+..++..+...|.
T Consensus 239 al~------------------------------------------------------------~~~~~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 239 ALE------------------------------------------------------------KAPGVTDVLRSAAKFYR 258 (472)
T ss_dssp HHH------------------------------------------------------------HCSSCHHHHHHHHHHHH
T ss_pred HHH------------------------------------------------------------hCccHHHHHHHHHHHHH
Confidence 621 01234456778888889
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHCCCCCCHH
Q 048743 356 KHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL-------------------GFLEAAHDILDDMELAGHPMDST 416 (653)
Q Consensus 356 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~g~~p~~~ 416 (653)
..|++++|...+++..+.. |.+..++..+...|... +..+.|...|++..+.. +.+..
T Consensus 259 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 335 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFR 335 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCC
T ss_pred HcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhh
Confidence 9999999999999988876 66666677666655432 12344555555554432 12344
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048743 417 TYKSLLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 417 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
++..+...|...|++++|...|++..+.
T Consensus 336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 336 VCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 5555666666666666666666666553
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=3.9e-11 Score=125.39 Aligned_cols=373 Identities=11% Similarity=-0.043 Sum_probs=201.4
Q ss_pred hHHHHHHHHHHHHhccchhHHHHHHHHhhhh-------cCCCC-chhHHHHHHHhhccCCcchhhhHHHHHHHHHhcc--
Q 048743 18 SREVLLRKLESASKNHQVGEAWETFNDFQRL-------HGIPE-RHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGK-- 87 (653)
Q Consensus 18 ~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~-------~~~~~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-- 87 (653)
....|+.+-..+...|+.++|++.|++..+. ...|. ..+|+.+-..+...|+ .++|...+.+.....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~---~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR---LSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhHh
Confidence 3456777778888999999999999886542 11233 3578888888888888 788888887764321
Q ss_pred ---CCc-hhHHHHHHHHHHHHhc--CCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhh
Q 048743 88 ---ADL-LQLDLLAKLSLSLARA--QMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLH 161 (653)
Q Consensus 88 ---~~~-~~~~t~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~ 161 (653)
+.. -...+|.....++.+. +++++|++.|++..+. .|+...+..-+.
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~------------------------- 179 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLA------------------------- 179 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHH-------------------------
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHH-------------------------
Confidence 111 1345666666666654 4688999999988764 444432221111
Q ss_pred hhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcc-HHHHHHHHHHHHh----cCChhhhHHHHH
Q 048743 162 LSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD-AHSIIILAQIHEM----NCQRDELKKFKC 236 (653)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~----~g~~~~a~~~~~ 236 (653)
.+...+...++.++|++.|++..+. .|+ ...+..+...+.. .|+.++|.+.++
T Consensus 180 --------------------~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~ 237 (472)
T 4g1t_A 180 --------------------IASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVE 237 (472)
T ss_dssp --------------------HHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHH
T ss_pred --------------------HHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 0111122234444444444444432 222 2222222222222 234444555544
Q ss_pred HhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchh
Q 048743 237 YIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPE 316 (653)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (653)
......+.. ..++..+...|...|++++|...|++..+.
T Consensus 238 ~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------------------------------------- 276 (472)
T 4g1t_A 238 EALEKAPGV----TDVLRSAAKFYRRKDEPDKAIELLKKALEY------------------------------------- 276 (472)
T ss_dssp HHHHHCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHHhCccH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHh-------------------------------------
Confidence 443332211 123455555555555555555555554210
Q ss_pred hhHHHHHHhhhhhHHHHHHhcCCCCCC-HHHHHHHHHH-------------------HHhcCChHHHHHHHHHHHhcCCC
Q 048743 317 LLEKDSILKMEGKQELVLFRNGKLLHS-NRAMAKLING-------------------YKKHGKNSELSWLLLSIKKEHHS 376 (653)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~-------------------~~~~~~~~~a~~~~~~m~~~~~~ 376 (653)
.|+ ..++..+-.. ....+..++|...+++.....
T Consensus 277 ------------------------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-- 330 (472)
T 4g1t_A 277 ------------------------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-- 330 (472)
T ss_dssp ------------------------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ------------------------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--
Confidence 010 0111111111 111234678888999888877
Q ss_pred CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHHcCChHHHHHHHHHHHHcCCccCchhh
Q 048743 377 FGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST--TYKSLLT-AYYKVKMFREAEALLKQMRKSCLVQNLSCE 453 (653)
Q Consensus 377 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 453 (653)
|.+..++..+...|...|++++|...|++..+....|... .+..+.. .+...|++++|...|++..+ +.|+....
T Consensus 331 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~ 408 (472)
T 4g1t_A 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREK 408 (472)
T ss_dssp TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHH
T ss_pred CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHH
Confidence 7777789999999999999999999999998865443321 2222222 34567899999999998876 45653110
Q ss_pred HHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CC
Q 048743 454 MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK-IR 531 (653)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~ 531 (653)
.+....+..+++...+.+ | +..+|+.+-..|...|++++|++.|++..+.+ ..
T Consensus 409 -----------------------~~~~~~l~~~~~~~l~~~--p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 409 -----------------------EKMKDKLQKIAKMRLSKN--GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHC--C-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred -----------------------HHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 122234444555444433 4 66778888888888888888888888877643 33
Q ss_pred CCHHH
Q 048743 532 PTVET 536 (653)
Q Consensus 532 p~~~t 536 (653)
|+..+
T Consensus 464 p~a~~ 468 (472)
T 4g1t_A 464 PSASS 468 (472)
T ss_dssp -----
T ss_pred CcHhh
Confidence 44443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.9e-11 Score=114.79 Aligned_cols=224 Identities=11% Similarity=0.017 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG--HPMD----STTY 418 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~ 418 (653)
..|..+-..+...|++++|...|++..+.. .+..+|..+...+...|++++|...+++..+.. ..|+ ..+|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 467888899999999999999999998876 556679999999999999999999999987642 1122 5788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-
Q 048743 419 KSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS- 497 (653)
Q Consensus 419 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p- 497 (653)
..+...+...|++++|...|++..+. .|+. . .+...|++++|...+++..... |
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~--~-------------------~~~~~~~~~~a~~~~~~~~~~~--~~ 137 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA--D-------------------ILTKLRNAEKELKKAEAEAYVN--PE 137 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH--H-------------------HHHHHHHHHHHHHHHHHHHHCC--HH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh--H-------------------HHHHHhHHHHHHHHHHHHHHcC--cc
Confidence 99999999999999999999999884 3432 1 1223678999999999988754 4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYE 577 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~ 577 (653)
+...|..+...+...|++++|++.|++..+.. +.+..++..+...+...|++++|...++...+. .+.+...|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~ 211 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNFVRAYI 211 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CHHHHHHHH
Confidence 66788999999999999999999999998864 336788999999999999999999999988743 233577899
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhC
Q 048743 578 TLLLNFLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 578 ~li~~~~~~g~~~~a~~~~~~m~~~ 602 (653)
.+...+...|++++|.+.+++..+.
T Consensus 212 ~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 212 RKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999988654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.3e-11 Score=115.48 Aligned_cols=194 Identities=9% Similarity=-0.121 Sum_probs=134.2
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCC---cccchhHHH
Q 048743 177 TMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTP---FAHHYQQFY 253 (653)
Q Consensus 177 ~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~ 253 (653)
...|..+...+.+.|++++|.+.|++..+.. ++...+..+..++...|++++|.+.++......+. .......++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888889999999999999999999887 77888888888899999999998888887664321 111113567
Q ss_pred HHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHH
Q 048743 254 ESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELV 333 (653)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (653)
..+...|...|++++|...|++..+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~------------------------------------------------------- 107 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLT------------------------------------------------------- 107 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh-------------------------------------------------------
Confidence 7777777888888888888777731
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048743 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413 (653)
Q Consensus 334 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 413 (653)
..|+. ..+.+.|++++|...++++.... +.+...|..+...+...|++++|...|++..+.. +.
T Consensus 108 ------~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~ 171 (258)
T 3uq3_A 108 ------EHRTA-------DILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PE 171 (258)
T ss_dssp ------HCCCH-------HHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred ------cCchh-------HHHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cc
Confidence 12332 23445566777777777766655 4455556666677777777777777777766543 23
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 414 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
+..+|..+...|.+.|++++|...|+...+
T Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 172 DARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 556666666666666666666666666655
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.42 E-value=2.4e-11 Score=112.12 Aligned_cols=198 Identities=13% Similarity=0.022 Sum_probs=125.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048743 342 HSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSL 421 (653)
Q Consensus 342 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 421 (653)
++...+..+-..+.+.|++++|...|++..+.. |.+...|..+...+.+.|++++|...|++..+.. +-+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 455567777788888888888888888888777 7777778888888888888888888888887653 2356677777
Q ss_pred HHHHHHc-----------CChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHH
Q 048743 422 LTAYYKV-----------KMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEM 490 (653)
Q Consensus 422 i~~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m 490 (653)
-.++... |++++|...|++..+. .|+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~----------------------------------------- 116 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPR----------------------------------------- 116 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTT-----------------------------------------
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--Ccc-----------------------------------------
Confidence 7777776 5555555555555442 233
Q ss_pred HHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCc
Q 048743 491 REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLA 570 (653)
Q Consensus 491 ~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 570 (653)
+...|..+-..|...|++++|++.|++..+.. .+...+..+..++...|++++|...++...+. -+
T Consensus 117 -------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~P 182 (217)
T 2pl2_A 117 -------YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-----AP 182 (217)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----ST
T ss_pred -------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC
Confidence 44556666666667777777777777766655 45666666666777777777777777666522 12
Q ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 048743 571 VSRDLYETLLLNFLQGGYFERVMEVIGYM 599 (653)
Q Consensus 571 p~~~~y~~li~~~~~~g~~~~a~~~~~~m 599 (653)
.+...+..+...+.+.|++++|.+.+++.
T Consensus 183 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 183 KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp TCHHHHHHHHHHHTC--------------
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 24555666666666777777776666543
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.40 E-value=1.3e-10 Score=110.08 Aligned_cols=202 Identities=9% Similarity=-0.065 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (653)
...|..+...+...|++++|...|+++.... +.+...|..+...|...|++++|.+.|++..+.. +.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 3567888888999999999999999988876 6677778899999999999999999999987753 336778888888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHH
Q 048743 424 AYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503 (653)
Q Consensus 424 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~ 503 (653)
.|...|++++|..+|+++.+.+..|+ +...|.
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~------------------------------------------------~~~~~~ 145 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPE------------------------------------------------RSRVFE 145 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTT------------------------------------------------HHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcc------------------------------------------------cHHHHH
Confidence 89999999999999988876222332 334556
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHH
Q 048743 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNF 583 (653)
Q Consensus 504 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~ 583 (653)
.+...|...|++++|++.|++..+.. +.+...+..+...+...|++++|..+++.+.+ ..+.+...+..+...+
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~~~ 219 (252)
T 2ho1_A 146 NLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQ-----GGGQNARSLLLGIRLA 219 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCcCcHHHHHHHHHHH
Confidence 66666777777777777777776643 22456666777777777777777777766641 1234555666677777
Q ss_pred HhCCCHHHHHHHHHHHHhC
Q 048743 584 LQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 584 ~~~g~~~~a~~~~~~m~~~ 602 (653)
...|++++|.+.++++.+.
T Consensus 220 ~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 220 KVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 7777777777777777644
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.37 E-value=2.5e-10 Score=105.70 Aligned_cols=210 Identities=9% Similarity=-0.071 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (653)
...|..+...+...|++++|...|+++.+.. +.+...|..+...|...|++++|...+++..+.. +.+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3467777888888888888888888887766 6666678888888888888888888888887653 336677777888
Q ss_pred HHHHc-CChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHH
Q 048743 424 AYYKV-KMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502 (653)
Q Consensus 424 ~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y 502 (653)
.+... |++++|...++.+.+.+..|+ +...|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~------------------------------------------------~~~~~ 116 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPT------------------------------------------------PYIAN 116 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSC------------------------------------------------HHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcc------------------------------------------------hHHHH
Confidence 88888 888888888887776211221 24456
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCc-cCHHHHHHHHH
Q 048743 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLA-VSRDLYETLLL 581 (653)
Q Consensus 503 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-p~~~~y~~li~ 581 (653)
..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+ .+...+..+..
T Consensus 117 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~ 190 (225)
T 2vq2_A 117 LNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR-----VEVLQADDLLLGWK 190 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HCSCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCCHHHHHHHHH
Confidence 667777777888888888888777642 224666777777788888888888888776532 12 35556666677
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 048743 582 NFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612 (653)
Q Consensus 582 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 612 (653)
.+...|+.+.|..+++.+.+. .|+...+.
T Consensus 191 ~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~ 219 (225)
T 2vq2_A 191 IAKALGNAQAAYEYEAQLQAN--FPYSEELQ 219 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHh--CCCCHHHH
Confidence 777788888888888777643 35544443
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.34 E-value=3.1e-10 Score=107.39 Aligned_cols=201 Identities=8% Similarity=0.004 Sum_probs=171.5
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHH
Q 048743 177 TMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESL 256 (653)
Q Consensus 177 ~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 256 (653)
...|..+...+...|++++|.+.|+++.+.. ..+...+..+...+...|++++|.+.++...+..+. +..++..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR----NARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC----cHHHHHHH
Confidence 5778899999999999999999999998763 235667888999999999999999999998776432 23478899
Q ss_pred HHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHh
Q 048743 257 LSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFR 336 (653)
Q Consensus 257 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (653)
...|...|++++|.++|++..+
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~---------------------------------------------------------- 133 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQ---------------------------------------------------------- 133 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTT----------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHh----------------------------------------------------------
Confidence 9999999999999999999832
Q ss_pred cCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 048743 337 NGKLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDS 415 (653)
Q Consensus 337 ~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 415 (653)
.+..| +...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.. +.+.
T Consensus 134 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 209 (252)
T 2ho1_A 134 -DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNA 209 (252)
T ss_dssp -CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCH
T ss_pred -CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcH
Confidence 11223 34577888899999999999999999998877 6677789999999999999999999999998753 3577
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048743 416 TTYKSLLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 416 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
..+..+...+.+.|++++|...++.+.+.
T Consensus 210 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 210 RSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88899999999999999999999999874
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.32 E-value=3.9e-10 Score=108.17 Aligned_cols=197 Identities=11% Similarity=-0.092 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (653)
..+|..+...+...|++++|...|++..... |.+..+|..+...|...|++++|...|++..+.. +.+..++..+..
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~ 119 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHH
Confidence 4577888888889999999999999988877 6777778889999999999999999999887753 235778888888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHH
Q 048743 424 AYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503 (653)
Q Consensus 424 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~ 503 (653)
.|...|++++|...|+++.+. .|+.. .+.
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~--~~~~~-------------------------------------------------~~~ 148 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQD--DPNDP-------------------------------------------------FRS 148 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCH-------------------------------------------------HHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCh-------------------------------------------------HHH
Confidence 888999999999998888773 34431 111
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc-----CHHHHHH
Q 048743 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV-----SRDLYET 578 (653)
Q Consensus 504 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p-----~~~~y~~ 578 (653)
..+..+...|++++|+..+++..... +++...+ .+...+...++.++|...+.... ...| +...|..
T Consensus 149 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~ 220 (275)
T 1xnf_A 149 LWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADA------TDNTSLAEHLSETNFY 220 (275)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHC------CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHh------cccccccccccHHHHH
Confidence 12222233466666666665555432 2222222 35555556666666666665443 1222 1355666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhC
Q 048743 579 LLLNFLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 579 li~~~~~~g~~~~a~~~~~~m~~~ 602 (653)
+...|.+.|++++|...|++..+.
T Consensus 221 la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 221 LGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Confidence 777777777777777777777644
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.32 E-value=9.1e-11 Score=112.62 Aligned_cols=191 Identities=9% Similarity=-0.133 Sum_probs=125.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (653)
+..+|..+...+...|++++|...|++..+.. |.+..+|..+...|.+.|++++|...|+++.+.. |+...+...+
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~ 151 (275)
T 1xnf_A 76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWL 151 (275)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHH
Confidence 45677778888888888888888888888776 6666778888888888888888888888887643 4444444455
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCC--C-CH
Q 048743 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAAL--S-TI 499 (653)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~--p-~~ 499 (653)
..+...|++++|...++...... |+........ ..+...++.++|...+.+..+.... | +.
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~--------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 215 (275)
T 1xnf_A 152 YLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWNIV--------------EFYLGNISEQTLMERLKADATDNTSLAEHLS 215 (275)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHHHH--------------HHHTTSSCHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC--CcchHHHHHH--------------HHHHHhcCHHHHHHHHHHHhccccccccccc
Confidence 55566788888888887776642 2221111111 0122356667777777776643311 1 25
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048743 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILW 557 (653)
Q Consensus 500 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 557 (653)
.+|..+...|.+.|++++|...|++..+. .|+. +.....++...|++++|++.+
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 67888888899999999999999988875 3432 222344566677777776554
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.32 E-value=5.7e-10 Score=103.28 Aligned_cols=209 Identities=7% Similarity=-0.105 Sum_probs=173.6
Q ss_pred CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHH
Q 048743 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFY 253 (653)
Q Consensus 174 ~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (653)
+.+...|..+...+...|++++|.+.|+...+.. ..+...+..+...+...|++++|.+.++......+.. ..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~ 79 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----AEIN 79 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHH
Confidence 3456778899999999999999999999998763 2346678889999999999999999999988764332 3468
Q ss_pred HHHHHhhhcc-CCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHH
Q 048743 254 ESLLSLHFKF-DDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQEL 332 (653)
Q Consensus 254 ~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (653)
..+...|... |++++|...|++..+
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~------------------------------------------------------ 105 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALA------------------------------------------------------ 105 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHT------------------------------------------------------
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHc------------------------------------------------------
Confidence 8999999999 999999999999832
Q ss_pred HHHhcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048743 333 VLFRNGKLLHS-NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGH 411 (653)
Q Consensus 333 ~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 411 (653)
....|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...+++..+...
T Consensus 106 -----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 106 -----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp -----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred -----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 112233 4577889999999999999999999998877 77777899999999999999999999999987543
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 412 PMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 412 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
..+...+..+...+...|+.+.+..+++.+.+. .|+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~ 215 (225)
T 2vq2_A 179 VLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYS 215 (225)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCC
Confidence 257788888888899999999999999998764 3543
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.31 E-value=1.2e-10 Score=107.47 Aligned_cols=99 Identities=14% Similarity=0.025 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048743 345 RAMAKLINGYKKH-----------GKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413 (653)
Q Consensus 345 ~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 413 (653)
..+..+-..+... |++++|+..|++..+.. |.+...|..+-..+...|++++|...|++..+.. .
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~ 149 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--D 149 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--c
Confidence 3555566666666 99999999999999887 7778889999999999999999999999998877 6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC
Q 048743 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN 449 (653)
Q Consensus 414 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 449 (653)
+...+..+..+|...|++++|...|+...+. .|+
T Consensus 150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~ 183 (217)
T 2pl2_A 150 TPEIRSALAELYLSMGRLDEALAQYAKALEQ--APK 183 (217)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STT
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 8889999999999999999999999998874 454
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.28 E-value=2.9e-10 Score=106.83 Aligned_cols=203 Identities=11% Similarity=0.062 Sum_probs=132.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048743 341 LHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS 420 (653)
Q Consensus 341 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 420 (653)
......|..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|...|++..+.. +.+..++..
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 96 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYG 96 (243)
T ss_dssp ----------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHH
Confidence 3455677888888899999999999999998876 6777778889999999999999999999987753 346778888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHH
Q 048743 421 LLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIY 500 (653)
Q Consensus 421 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 500 (653)
+...+...|++++|...+++..+.. |+ +..
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~--~~------------------------------------------------~~~ 126 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAG--ME------------------------------------------------NGD 126 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT--CC------------------------------------------------SHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CC------------------------------------------------CHH
Confidence 8888899999999999988887642 32 334
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHH
Q 048743 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLL 580 (653)
Q Consensus 501 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li 580 (653)
.|..+...|...|++++|++.+++..+.. +.+...+..+...+...|++++|..+++.+.+. .+.+..++..+.
T Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la 200 (243)
T 2q7f_A 127 LFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ-----DPGHADAFYNAG 200 (243)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-----CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccHHHHHHHH
Confidence 45566666677777777777777766542 234556667777777777777777777766532 123455677777
Q ss_pred HHHHhCCCHHHHHHHHHHHHhC
Q 048743 581 LNFLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 581 ~~~~~~g~~~~a~~~~~~m~~~ 602 (653)
..|...|++++|.+.+++..+.
T Consensus 201 ~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 201 VTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHcc
Confidence 7777777777777777777643
No 48
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.28 E-value=4.3e-10 Score=114.69 Aligned_cols=235 Identities=11% Similarity=-0.039 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----cccHHHHHHHHHHcCC--------------------HHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGE----STLCSDVIDALIQLGF--------------------LEAAH 400 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~a~ 400 (653)
.++..+...+...|++++|...+++.........+ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 46677888888999999999988876654311111 3358888888889999 99999
Q ss_pred HHHHHHHH----CCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCc-cCchhhHHHHhhHHHHhhhcccccccc
Q 048743 401 DILDDMEL----AGHPM-DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLV-QNLSCEMVVSERFSEVADKSASFTDTS 474 (653)
Q Consensus 401 ~~~~~m~~----~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~~~~~l~~~~~~~~~~~~~~ 474 (653)
..+.+..+ .+..| ...++..+...|...|++++|...+++..+..-. ++..........+ ...|
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l----------a~~~ 237 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL----------GNAY 237 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------HHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH----------HHHH
Confidence 88887643 22111 2346778888899999999999999888763111 1111000000000 0123
Q ss_pred cccCCHHHHHHHHHHHHHccC----CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHH
Q 048743 475 SLMDKSDLAESLIQEMREEAA----LS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI-RPT----VETFYYLVYGH 544 (653)
Q Consensus 475 ~~~~~~~~a~~~~~~m~~~~~----~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~~ 544 (653)
...|++++|...+++..+... .+ ...++..+...|...|++++|.+.+++..+... .++ ..++..+...|
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAY 317 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 446777777777766553211 01 145667777777777777777777777664211 111 34566667777
Q ss_pred hccCCHHHHHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHHHhCCCH
Q 048743 545 SSLEMYRDITILWGDIKRNIESGVLAV-SRDLYETLLLNFLQGGYF 589 (653)
Q Consensus 545 ~~~~~~~~a~~~~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~ 589 (653)
...|++++|..+++...+..+..+..+ ...++..+...+...|+.
T Consensus 318 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 777777777777777665544443322 233455555555555544
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.28 E-value=2.3e-09 Score=102.63 Aligned_cols=246 Identities=6% Similarity=-0.084 Sum_probs=186.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMD--STTYKSLLT 423 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~ 423 (653)
.+......+...|++++|...|++..+.. |.+...+..+...|...|++++|...+++..+....|+ ..+|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34466678889999999999999999887 77777799999999999999999999999988432222 345889999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCccCchhh-HHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHH
Q 048743 424 AYYKVKMFREAEALLKQMRKSCLVQNLSCE-MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYK 501 (653)
Q Consensus 424 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~ 501 (653)
.+...|++++|...|+...+. .|+.... .... ..|...|++++|...|++..+.. | +...
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~--------------~~~~~~~~~~~A~~~~~~al~~~--~~~~~~ 144 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIG--------------SYFYNKGNFPLAIQYMEKQIRPT--TTDPKV 144 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHH--------------HHHHHTTCHHHHHHHHGGGCCSS--CCCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHH--------------HHHHHccCHHHHHHHHHHHhhcC--CCcHHH
Confidence 999999999999999999884 3543211 1111 12445899999999999988763 5 6777
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHhhhCCCc---cCHHH
Q 048743 502 LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEM---YRDITILWGDIKRNIESGVLA---VSRDL 575 (653)
Q Consensus 502 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~---p~~~~ 575 (653)
|..+...+...+++++|++.|++..+.. +.+...+..+...+...|+ +++|...++...+......-. .....
T Consensus 145 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (272)
T 3u4t_A 145 FYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEA 223 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 7777734444569999999999998853 2236677778888888888 888999998887553222111 01357
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 048743 576 YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSE 614 (653)
Q Consensus 576 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 614 (653)
|..+...|...|++++|.+.+++..+. .|+.....-.
T Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~ 260 (272)
T 3u4t_A 224 NEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHHHHH
Confidence 888889999999999999999999854 4665444433
No 50
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.27 E-value=4.6e-10 Score=114.83 Aligned_cols=214 Identities=12% Similarity=0.004 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCCCcccHHHHHHHHHHcCC-----------------HHHHHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEH----HSFGESTLCSDVIDALIQLGF-----------------LEAAHDIL 403 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~ 403 (653)
..+..+-..|...|++++|...+++..... ..+....++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 466778888889999999999888765541 012233457788888888898 88888888
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccC
Q 048743 404 DDMELA----GHPM-DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD 478 (653)
Q Consensus 404 ~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 478 (653)
++..+. +-.+ ...++..+...|...|++++|...+++..+.. ++. +
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~---------------------------~ 257 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--REF---------------------------G 257 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH---------------------------T
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--Hhc---------------------------C
Confidence 776431 1111 23467777778888888888888888776531 110 0
Q ss_pred CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--C---CCHHHHHHHHHHHhccCCHHHH
Q 048743 479 KSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI--R---PTVETFYYLVYGHSSLEMYRDI 553 (653)
Q Consensus 479 ~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~--~---p~~~t~~~li~~~~~~~~~~~a 553 (653)
+.. ....+|..+...|...|++++|++.|++...... . ....++..+...+...|++++|
T Consensus 258 ~~~---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (411)
T 4a1s_A 258 DRA---------------AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA 322 (411)
T ss_dssp CHH---------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcH---------------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 000 0123567777788888888888888887765211 0 1145677777888888888888
Q ss_pred HHHHHHHHHHhhhCCCc-cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 048743 554 TILWGDIKRNIESGVLA-VSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 554 ~~~~~~~~~~~~~~~~~-p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 602 (653)
..+++.........+.. ....++..+...|...|++++|.+.+++..+.
T Consensus 323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 88888776543333222 22446777888888899999999888887643
No 51
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.26 E-value=2.4e-10 Score=113.05 Aligned_cols=214 Identities=13% Similarity=-0.005 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----cccHHHHHHHHHHcCC--------------------HHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGE----STLCSDVIDALIQLGF--------------------LEAAH 400 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~a~ 400 (653)
.++..+...+...|++++|...+++..+......+ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 35677777888888888888888876543311111 2257777788888888 88888
Q ss_pred HHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhccccccccc
Q 048743 401 DILDDMELA----GHPM-DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSS 475 (653)
Q Consensus 401 ~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 475 (653)
..+++..+. +..| ...++..+...+...|++++|...+++..+..-......
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----------------------- 220 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA----------------------- 220 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH-----------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH-----------------------
Confidence 887775431 1111 234667777778888888888888877765210000000
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHhccCCH
Q 048743 476 LMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI-RPT----VETFYYLVYGHSSLEMY 550 (653)
Q Consensus 476 ~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~~~~ 550 (653)
....++..+...|...|++++|.+.+++...... .++ ..++..+...+...|++
T Consensus 221 ---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 221 ---------------------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ---------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence 0233567777778888888888888887765211 111 45667777888888999
Q ss_pred HHHHHHHHHHHHHhhhCCCc-cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 048743 551 RDITILWGDIKRNIESGVLA-VSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 551 ~~a~~~~~~~~~~~~~~~~~-p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 602 (653)
++|..+++...+.....+-. ....++..+...|...|++++|.+.+++..+.
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99988888776543332222 22446777888888999999999998887654
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.26 E-value=4.6e-09 Score=100.69 Aligned_cols=224 Identities=9% Similarity=-0.065 Sum_probs=179.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ----LGFLEAAHDILDDMELAGHPMDSTTY 418 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~ 418 (653)
+..++..+-..+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44567788888999999999999999988743 44568889999999 999999999999998876 78888
Q ss_pred HHHHHHHHH----cCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccc----cCCHHHHHHHHHHH
Q 048743 419 KSLLTAYYK----VKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSL----MDKSDLAESLIQEM 490 (653)
Q Consensus 419 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~m 490 (653)
..+-..|.. .+++++|...|++..+.+ .+.....+ . ..|.. .++.++|...|++.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l--g--------------~~~~~~~~~~~~~~~A~~~~~~a 140 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASL--G--------------GIYHDGKVVTRDFKKAVEYFTKA 140 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHH--H--------------HHHHHCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHH--H--------------HHHHcCCCcccCHHHHHHHHHHH
Confidence 889999999 999999999999998865 22211111 1 11223 78999999999998
Q ss_pred HHccCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHH
Q 048743 491 REEAALSTIYKLNSSIYFFCK----GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS----LEMYRDITILWGDIKR 562 (653)
Q Consensus 491 ~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~~~~ 562 (653)
.+.+ +...+..+-..|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|..+++...+
T Consensus 141 ~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 141 CDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred HhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 8876 56677788888887 899999999999988764 45677778888888 8999999999987752
Q ss_pred HhhhCCCccCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCC
Q 048743 563 NIESGVLAVSRDLYETLLLNFLQ----GGYFERVMEVIGYMKKQN 603 (653)
Q Consensus 563 ~~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g 603 (653)
. . +...+..+-..|.. .+++++|.+.|++..+.|
T Consensus 215 ~------~-~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 215 L------E-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp T------T-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred C------C-CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 2 2 25677778888888 899999999999988776
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.26 E-value=1e-09 Score=105.06 Aligned_cols=163 Identities=13% Similarity=0.073 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY 425 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (653)
.|..+...+...|++++|...|++..+.. |.+..+|..+...|...|++++|...|++..+. .+.+...|..+...+
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~ 152 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAY 152 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHH
Confidence 45555566666666666666666666554 444455666666666666666666666665544 222344444444233
Q ss_pred HHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 048743 426 YKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505 (653)
Q Consensus 426 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~l 505 (653)
...+++++|...|++..+. .|+ +...|..+
T Consensus 153 ~~~~~~~~A~~~~~~a~~~--~p~------------------------------------------------~~~~~~~~ 182 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLEL--KPN------------------------------------------------IYIGYLWR 182 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STT------------------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh--Ccc------------------------------------------------chHHHHHH
Confidence 3334566666666555542 232 34445555
Q ss_pred HHHHHcCCC---HHHHHHHHHHHHhcC-CCCC------HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 506 IYFFCKGKM---IGDALKIYRRMQEMK-IRPT------VETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 506 i~~~~~~g~---~~~a~~~~~~m~~~g-~~p~------~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
...+...|+ +++|...|++..+.. -.|+ ...|..+...|...|++++|.++++.+.
T Consensus 183 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 248 (272)
T 3u4t_A 183 ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNIL 248 (272)
T ss_dssp HHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566666666 777777777776531 2233 2467777888888899999999888876
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.23 E-value=2.9e-10 Score=106.83 Aligned_cols=207 Identities=12% Similarity=-0.001 Sum_probs=155.4
Q ss_pred CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHH
Q 048743 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFY 253 (653)
Q Consensus 174 ~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (653)
......|..+...+.+.|++++|...|++..+.. ..+...+..+...+...|++++|.+.++...+..+. +..++
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~ 94 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS----AATAY 94 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc----chHHH
Confidence 4456778888899999999999999999998753 235666888899999999999999999998876432 23468
Q ss_pred HHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHH
Q 048743 254 ESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELV 333 (653)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (653)
..+...|...|++++|.++|++..+.
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~------------------------------------------------------ 120 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRA------------------------------------------------------ 120 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------------------------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh------------------------------------------------------
Confidence 89999999999999999999988320
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048743 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413 (653)
Q Consensus 334 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 413 (653)
.+.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|...|++..+.. +.
T Consensus 121 ------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 191 (243)
T 2q7f_A 121 ------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PG 191 (243)
T ss_dssp ------TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TT
T ss_pred ------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 12345678888999999999999999999998877 6777789999999999999999999999998753 34
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 414 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
+..++..+..+|.+.|++++|...+++..+. .|+.
T Consensus 192 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~ 226 (243)
T 2q7f_A 192 HADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDH 226 (243)
T ss_dssp CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--Ccch
Confidence 6889999999999999999999999999874 4554
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.19 E-value=2.9e-09 Score=108.43 Aligned_cols=246 Identities=11% Similarity=-0.035 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----H
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEH----HSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGH-PMD----S 415 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~ 415 (653)
..|..+...+...|++++|...+++..... ..+....++..+...|...|++++|...+++..+... .++ .
T Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 127 (406)
T 3sf4_A 48 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 127 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchH
Confidence 467888889999999999999998865431 1122244588889999999999999999998754210 012 4
Q ss_pred HHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHcCCc-cCc-hhhHHHHhhHHHHhhhccccccc
Q 048743 416 TTYKSLLTAYYKVKM--------------------FREAEALLKQMRKSCLV-QNL-SCEMVVSERFSEVADKSASFTDT 473 (653)
Q Consensus 416 ~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~~~~~-p~~-~~~~~~~~~l~~~~~~~~~~~~~ 473 (653)
.++..+...|...|+ +++|...+++..+..-. ++. ........ + ...
T Consensus 128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-l----------a~~ 196 (406)
T 3sf4_A 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGN-L----------GNT 196 (406)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-H----------HHH
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH-H----------HHH
Confidence 478888889999999 99999999887653111 111 11111110 1 122
Q ss_pred ccccCCHHHHHHHHHHHHHccC-CC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHH
Q 048743 474 SSLMDKSDLAESLIQEMREEAA-LS----TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI-RPT----VETFYYLVYG 543 (653)
Q Consensus 474 ~~~~~~~~~a~~~~~~m~~~~~-~p----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~ 543 (653)
|...|++++|...+++..+... .+ ...+|..+...|...|++++|+..+++...... .++ ..++..+...
T Consensus 197 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 276 (406)
T 3sf4_A 197 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 276 (406)
T ss_dssp HHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH
Confidence 4458999999999988774321 11 234788899999999999999999998875311 112 4577888899
Q ss_pred HhccCCHHHHHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 048743 544 HSSLEMYRDITILWGDIKRNIESGVLAV-SRDLYETLLLNFLQGGYFERVMEVIGYMKK 601 (653)
Q Consensus 544 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 601 (653)
+...|++++|..+++...+.....+-.+ ...++..+...|...|++++|.+.+++..+
T Consensus 277 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 277 YTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998876544443322 255778888899999999999999988753
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.19 E-value=2.9e-09 Score=106.60 Aligned_cols=163 Identities=8% Similarity=-0.048 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (653)
+...|+.+-.++...|++++|+..|+++.+.. |.+...|..+..++.+.|++++|+..|+++.+... -+...|+.+.
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg 241 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRY 241 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 34567777777778888888888888888777 77777788888888888888888888888877543 2677777777
Q ss_pred HHHHH-cCChHHH-----HHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCC
Q 048743 423 TAYYK-VKMFREA-----EALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAAL 496 (653)
Q Consensus 423 ~~~~~-~~~~~~a-----~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 496 (653)
.++.+ .|..++| +..|++..+ +.|+
T Consensus 242 ~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~----------------------------------------------- 272 (382)
T 2h6f_A 242 FVISNTTGYNDRAVLEREVQYTLEMIK--LVPH----------------------------------------------- 272 (382)
T ss_dssp HHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTT-----------------------------------------------
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHH--HCCC-----------------------------------------------
Confidence 77777 5554666 355555544 2333
Q ss_pred CCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC---------CHHHHHHHHHHH
Q 048743 497 STIYKLNSSIYFFCKGK--MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE---------MYRDITILWGDI 560 (653)
Q Consensus 497 p~~~~y~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~---------~~~~a~~~~~~~ 560 (653)
+...|+.+...+...| ++++|++.+.++ + .-..+...+..+...|.+.| ..++|.++++.+
T Consensus 273 -~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 273 -NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp -CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 4556666777777766 577888887776 2 22334566777777777653 247777777766
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.18 E-value=8.6e-09 Score=103.13 Aligned_cols=235 Identities=9% Similarity=-0.029 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF-LEAAHDILDDMELAGHPMDSTTYKSLLT 423 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (653)
..|+.+-..+.+.|++++|+..+++..... |.+..+|+.+...+.+.|+ +++|+..|++..+... -+...|+.+-.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 467888888999999999999999999988 8888889999999999997 9999999999988643 37889999999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHHH
Q 048743 424 AYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKL 502 (653)
Q Consensus 424 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y 502 (653)
++...|++++|+..|++..+ +.|+.......... .+...|++++|...|+++.+.. | +...|
T Consensus 175 ~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~-------------~~~~~g~~~eAl~~~~~al~l~--P~~~~a~ 237 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQW-------------VIQEFKLWDNELQYVDQLLKED--VRNNSVW 237 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHH-------------HHHHHTCCTTHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHH-------------HHHHcCChHHHHHHHHHHHHhC--CCCHHHH
Confidence 99999999999999999988 45665222211111 1234789999999999999876 5 78889
Q ss_pred HHHHHHHHc-CCCHHHH-----HHHHHHHHhcCCCC-CHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHhhhCCCccCH
Q 048743 503 NSSIYFFCK-GKMIGDA-----LKIYRRMQEMKIRP-TVETFYYLVYGHSSLE--MYRDITILWGDIKRNIESGVLAVSR 573 (653)
Q Consensus 503 ~~li~~~~~-~g~~~~a-----~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~p~~ 573 (653)
+.+...|.+ .|..++| ++.|++.++. .| +...|..+...+...| ++++|.+.+..+ ..-..+.
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~------~~~p~~~ 309 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL------QPSHSSP 309 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH------TTTCCCH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh------ccCCCCH
Confidence 999999999 6665777 5888888875 34 4667888888888888 688998888655 1234467
Q ss_pred HHHHHHHHHHHhCC---------CHHHHHHHHHHH-HhCCCCCCHH
Q 048743 574 DLYETLLLNFLQGG---------YFERVMEVIGYM-KKQNMYVDKL 609 (653)
Q Consensus 574 ~~y~~li~~~~~~g---------~~~~a~~~~~~m-~~~g~~p~~~ 609 (653)
..+..+...|.+.| ..++|.++++++ .+ +.|+..
T Consensus 310 ~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~ 353 (382)
T 2h6f_A 310 YLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRK 353 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGH
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhH
Confidence 78888999998874 358999999998 53 445433
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.17 E-value=3e-08 Score=94.96 Aligned_cols=223 Identities=11% Similarity=-0.028 Sum_probs=178.8
Q ss_pred HHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhH
Q 048743 251 QFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQ 330 (653)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (653)
.++..+-..|...|++++|...|++..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~---------------------------------------------------- 34 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD---------------------------------------------------- 34 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH----------------------------------------------------
Confidence 3567778888899999999999998831
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH----cCCHHHHHHH
Q 048743 331 ELVLFRNGKLLHSNRAMAKLINGYKK----HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQ----LGFLEAAHDI 402 (653)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~ 402 (653)
.-+...+..+-..|.. .+++++|...|++..+.+ +...+..+-..|.. .+++++|...
T Consensus 35 ----------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 100 (273)
T 1ouv_A 35 ----------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCHLLGNLYYSGQGVSQNTNKALQY 100 (273)
T ss_dssp ----------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHhCCCCcccCHHHHHHH
Confidence 1234567778888888 999999999999988765 45668889999999 9999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccC
Q 048743 403 LDDMELAGHPMDSTTYKSLLTAYYK----VKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMD 478 (653)
Q Consensus 403 ~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 478 (653)
|++..+.+ +...+..+-..|.. .+++++|...|++..+.+ .+.... .+.. .+. ......+
T Consensus 101 ~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~-~lg~-----~~~------~~~~~~~ 164 (273)
T 1ouv_A 101 YSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-DGDGCT-ILGS-----LYD------AGRGTPK 164 (273)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHH-HHHH-----HHH------HTSSSCC
T ss_pred HHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-cHHHHH-HHHH-----HHH------cCCCCCC
Confidence 99999875 78889999999999 999999999999998865 222111 1111 100 0011278
Q ss_pred CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc----cCCH
Q 048743 479 KSDLAESLIQEMREEAALSTIYKLNSSIYFFCK----GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS----LEMY 550 (653)
Q Consensus 479 ~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~ 550 (653)
+.++|...|++..+.+ +...+..+-..|.. .+++++|++.|++..+.+ +...+..+-..|.. .+++
T Consensus 165 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~ 238 (273)
T 1ouv_A 165 DLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNE 238 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCS
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 9999999999998875 56778889999999 999999999999998864 26677788888888 9999
Q ss_pred HHHHHHHHHHH
Q 048743 551 RDITILWGDIK 561 (653)
Q Consensus 551 ~~a~~~~~~~~ 561 (653)
++|.++++...
T Consensus 239 ~~A~~~~~~a~ 249 (273)
T 1ouv_A 239 KQAIENFKKGC 249 (273)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998775
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.16 E-value=1.3e-09 Score=107.76 Aligned_cols=283 Identities=13% Similarity=-0.019 Sum_probs=195.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcc-----HHHHHHHHHHHHhcCChhhhHHHHHHhhhcCC--CcccchhH
Q 048743 179 IFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD-----AHSIIILAQIHEMNCQRDELKKFKCYIDQLST--PFAHHYQQ 251 (653)
Q Consensus 179 ~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~ 251 (653)
.+...-..+...|++++|...|++..+.. |+ ...+..+...+...|++++|.+.++....... ++......
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34455677889999999999999998863 43 24577888899999999999999887655411 22223345
Q ss_pred HHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHH
Q 048743 252 FYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQE 331 (653)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (653)
++..+...|...|++++|...+++..+..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------------------------------------------- 113 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDIS--------------------------------------------------- 113 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------------------------------------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH---------------------------------------------------
Confidence 78889999999999999999999873200
Q ss_pred HHHHhcCCCC-CCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHhc----CCCCCCcccHHHH
Q 048743 332 LVLFRNGKLL-HSNRAMAKLINGYKKHGK--------------------NSELSWLLLSIKKE----HHSFGESTLCSDV 386 (653)
Q Consensus 332 ~~~~~~~~~~-p~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~~----~~~~~~~~~~~~l 386 (653)
...+-. ....++..+...+...|+ +++|...+++.... +..+....++..+
T Consensus 114 ----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 189 (338)
T 3ro2_A 114 ----RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL 189 (338)
T ss_dssp ----HHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----HHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 000000 113467788888888999 99999998876432 1112223358888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHH
Q 048743 387 IDALIQLGFLEAAHDILDDMELA----GHP-MDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFS 461 (653)
Q Consensus 387 i~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~ 461 (653)
...+...|++++|...+++..+. +.. ....++..+...+...|++++|...+++..+..-......
T Consensus 190 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------- 260 (338)
T 3ro2_A 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--------- 260 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH---------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh---------
Confidence 89999999999999999987542 111 1123778888889999999999999988765311100000
Q ss_pred HHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc----CCCC-CHHH
Q 048743 462 EVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM----KIRP-TVET 536 (653)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t 536 (653)
....++..+...|...|++++|...+++..+. +-.+ ...+
T Consensus 261 -----------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 305 (338)
T 3ro2_A 261 -----------------------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 305 (338)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 01345666777777788888888887777642 1111 1345
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q 048743 537 FYYLVYGHSSLEMYRDITILWGDIKR 562 (653)
Q Consensus 537 ~~~li~~~~~~~~~~~a~~~~~~~~~ 562 (653)
+..+...+...|++++|..+++...+
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 306 CWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66777778888888888888877653
No 60
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.14 E-value=1e-08 Score=103.74 Aligned_cols=305 Identities=10% Similarity=-0.069 Sum_probs=186.0
Q ss_pred HHhcCChhhHHHHHHHHHhc--CCCccHH--HHHHHHHH--HHhcCChhhhH-----------HHHHHhhhcCCCccc-c
Q 048743 187 CVRFGSSLKGQHIMELMSQT--GVVADAH--SIIILAQI--HEMNCQRDELK-----------KFKCYIDQLSTPFAH-H 248 (653)
Q Consensus 187 ~~~~g~~~~a~~l~~~m~~~--g~~p~~~--t~~~ll~~--~~~~g~~~~a~-----------~~~~~~~~~~~~~~~-~ 248 (653)
+.+.+++++|..+++++.+. .+..|.. .|-.++.. ..-.+.++.+. +.++.+.....+... .
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45689999999999998764 2333433 23333322 22234444454 666666543211100 0
Q ss_pred hhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhh
Q 048743 249 YQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEG 328 (653)
Q Consensus 249 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (653)
....+...-..+...|++++|...|++..+....
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~---------------------------------------------- 135 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIF---------------------------------------------- 135 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGG----------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 0112223455667889999999999888321000
Q ss_pred hHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-----CcccHHHHHHHHHHcCCHHHHHHH
Q 048743 329 KQELVLFRNGKLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG-----ESTLCSDVIDALIQLGFLEAAHDI 402 (653)
Q Consensus 329 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~ 402 (653)
.+-.+ ...+|..+-..|...|++++|...+.+........+ ...+++.+...|...|++++|...
T Consensus 136 ---------~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 206 (383)
T 3ulq_A 136 ---------VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISH 206 (383)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 00011 224677888888899999999998888665321111 123577778888888888888888
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCccCchhhHHHHhhHHHHhhhccccccc
Q 048743 403 LDDMELA----GHPM-DSTTYKSLLTAYYKVKMFREAEALLKQMRKS----CLVQNLSCEMVVSERFSEVADKSASFTDT 473 (653)
Q Consensus 403 ~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~~~~~l~~~~~~~~~~~~~ 473 (653)
|++..+. +-.+ ...+|..+-..|...|++++|...|++..+. +..|.
T Consensus 207 ~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------ 262 (383)
T 3ulq_A 207 FQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS------------------------ 262 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG------------------------
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh------------------------
Confidence 8876542 1111 1236777777888888888888888776652 11111
Q ss_pred ccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHhccCC
Q 048743 474 SSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM----KIRPTVETFYYLVYGHSSLEM 549 (653)
Q Consensus 474 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~li~~~~~~~~ 549 (653)
...++..+...|.+.|++++|.+.+++..+. +-+.....+..+-..+...|+
T Consensus 263 ------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 263 ------------------------LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp ------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred ------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 2445677777778888888888888777652 111112335566667777777
Q ss_pred ---HHHHHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 048743 550 ---YRDITILWGDIKRNIESGVLAV-SRDLYETLLLNFLQGGYFERVMEVIGYMKK 601 (653)
Q Consensus 550 ---~~~a~~~~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 601 (653)
+++|..+++.. +..| ....+..+...|...|++++|.+.+++..+
T Consensus 319 ~~~~~~al~~~~~~-------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 319 EEAIQGFFDFLESK-------MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-------cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55666555432 2222 334566777788888888888888877653
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.13 E-value=8.1e-09 Score=92.21 Aligned_cols=165 Identities=8% Similarity=0.032 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (653)
+..+|..+-..|.+.|++++|+..|++..+.. |.+..+|..+...|.+.|++++|...+........ -+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence 34456666666666677777777666666665 55666666666666666666666666666655422 2445555555
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHH
Q 048743 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502 (653)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y 502 (653)
..+...++++.+...+....+. .|+ +...+
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~--~~~------------------------------------------------~~~~~ 110 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL--NTV------------------------------------------------YADAY 110 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTT------------------------------------------------CHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--Ccc------------------------------------------------chHHH
Confidence 5666666666666666655542 232 33445
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 503 NSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 503 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|.+.|+...
T Consensus 111 ~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 111 YKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555556666666666666555532 1234455555555666666666666655544
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.13 E-value=1.9e-09 Score=110.21 Aligned_cols=211 Identities=10% Similarity=-0.075 Sum_probs=133.5
Q ss_pred chHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCC-c----hhHHHHHHHhhccCCcchhhhHHHHHHHHHhc---cC
Q 048743 17 SSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPE-R----HVVNRFITDLCYSAEPHWLQKACDLVLKIQKG---KA 88 (653)
Q Consensus 17 p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~-~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---~~ 88 (653)
.....+..+...+...|++++|...|+...+. .|+ + ..+..+-..+...|+ .++|...+.+.... .+
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~ 120 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGD---YNKAMQYHKHDLTLAKSMN 120 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHcc
Confidence 34455666677888999999999999998885 233 2 367777778888887 78888888876443 12
Q ss_pred C-chhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhc
Q 048743 89 D-LLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKS 167 (653)
Q Consensus 89 ~-~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 167 (653)
. ......+..+...|...|++++|+..+++..+.. ...
T Consensus 121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------------------~~~-------- 159 (411)
T 4a1s_A 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA---------------------------------RQL-------- 159 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------------------------HHH--------
T ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------------------------HHh--------
Confidence 2 2356788899999999999999999998875521 000
Q ss_pred CCccCCCCchhhHHHHHHHHHhcCC-----------------hhhHHHHHHHHHhc----CCCcc-HHHHHHHHHHHHhc
Q 048743 168 NGAELIKPDTMIFNLVLHACVRFGS-----------------SLKGQHIMELMSQT----GVVAD-AHSIIILAQIHEMN 225 (653)
Q Consensus 168 ~~~~~~~~~~~~yn~li~~~~~~g~-----------------~~~a~~l~~~m~~~----g~~p~-~~t~~~ll~~~~~~ 225 (653)
........+|+.+...|...|+ +++|.+.+++..+. +-.|. ..++..+...+...
T Consensus 160 ---~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 236 (411)
T 4a1s_A 160 ---GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL 236 (411)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred ---hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 0001124467777778888888 78888777775542 11111 12355566666666
Q ss_pred CChhhhHHHHHHhhhcCC--CcccchhHHHHHHHHhhhccCCHHHHHHHHHHh
Q 048743 226 CQRDELKKFKCYIDQLST--PFAHHYQQFYESLLSLHFKFDDIDAAGELILDM 276 (653)
Q Consensus 226 g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 276 (653)
|++++|.+.++...+... +.......++..+...|...|++++|...|++.
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 237 GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 666666666655544311 111111224555555666666666666666554
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.12 E-value=3.1e-09 Score=103.85 Aligned_cols=240 Identities=13% Similarity=0.059 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEH------HSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA------GH 411 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~ 411 (653)
..++..+...+...|++++|..+|+++.+.. ..+....++..+...|...|++++|...+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 4578899999999999999999999987731 12444556888999999999999999999998653 22
Q ss_pred -CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC------CccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHH
Q 048743 412 -PMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC------LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAE 484 (653)
Q Consensus 412 -~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~ 484 (653)
+....++..+...|...|++++|...|++..+.. -.|.. ..... .+. ..|...|++++|.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~--~~~~~-~la----------~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV--AKQLN-NLA----------LLCQNQGKYEEVE 173 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHH-HHH----------HHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH--HHHHH-HHH----------HHHHHcCCHHHHH
Confidence 2245678889999999999999999999987641 11221 11111 111 1244578889998
Q ss_pred HHHHHHHHc------cCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-------CCCCCHHHH-------HHHHHH
Q 048743 485 SLIQEMREE------AALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEM-------KIRPTVETF-------YYLVYG 543 (653)
Q Consensus 485 ~~~~~m~~~------~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~t~-------~~li~~ 543 (653)
..|++..+. +..| ...++..+...|...|++++|.+.+++..+. ...+..... ..+...
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence 888887764 2233 4567888888888899999999998888863 122222222 222222
Q ss_pred HhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 048743 544 HSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601 (653)
Q Consensus 544 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 601 (653)
+...+.+.++...+..... ....+..++..+...|.+.|++++|.+.+++..+
T Consensus 254 ~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKV-----DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CCSCCCC--------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCC-----CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3333444444444443321 1233456788888999999999999999988753
No 64
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.10 E-value=4.4e-08 Score=101.12 Aligned_cols=108 Identities=7% Similarity=-0.087 Sum_probs=49.0
Q ss_pred HHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhh---hhhhcCCccCCCC
Q 048743 99 LSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHL---SAEKSNGAELIKP 175 (653)
Q Consensus 99 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~ 175 (653)
+...+.+.|++++|+++|++..+.|. |+... . +-.++...|.. ++|.+.|++....
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~A~~--~------------------Lg~~y~~~g~~~d~~~A~~~~~~A~~~ 67 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SEAQV--G------------------LADIQVGTRDPAQIKQAEATYRAAADT 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CTGGG--T------------------CC-------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HHHHH--H------------------HHHHHHccCCCCCHHHHHHHHHHHHhC
Confidence 45667788999999999999877652 22211 0 11111112333 6677777655555
Q ss_pred chhhHHHHHHHHHhcC-----ChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhh
Q 048743 176 DTMIFNLVLHACVRFG-----SSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDE 230 (653)
Q Consensus 176 ~~~~yn~li~~~~~~g-----~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 230 (653)
+...+..|-..+...| ++++|.+.|+...+.|.. + .+..|...|...+..+.
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~ 124 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFP 124 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCT
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCC
Confidence 6666666666454444 667788887777776532 2 34444455554444333
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.10 E-value=2.3e-09 Score=104.77 Aligned_cols=217 Identities=14% Similarity=0.061 Sum_probs=164.8
Q ss_pred CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc-------CCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcC----
Q 048743 174 KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQT-------GVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLS---- 242 (653)
Q Consensus 174 ~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---- 242 (653)
+.+..++..+...+...|++++|..+|+++.+. .......++..+...+...|++++|.+.++......
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 445678999999999999999999999999873 222234557889999999999999999988887641
Q ss_pred CCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHH
Q 048743 243 TPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDS 322 (653)
Q Consensus 243 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (653)
.++......++..+...|...|++++|...|++..+...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------------------------------- 142 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE----------------------------------------- 142 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-----------------------------------------
Confidence 011233456789999999999999999999998832000
Q ss_pred HHhhhhhHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCCCCcccHHHHHHHHHHcCC
Q 048743 323 ILKMEGKQELVLFRNGKLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKE------HHSFGESTLCSDVIDALIQLGF 395 (653)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~~li~~~~~~g~ 395 (653)
....+-.| ....+..+...+...|++++|...+++.... +..+....++..+...|...|+
T Consensus 143 ------------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 210 (311)
T 3nf1_A 143 ------------KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK 210 (311)
T ss_dssp ------------HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred ------------HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC
Confidence 00001112 2346788889999999999999999998765 2123334568889999999999
Q ss_pred HHHHHHHHHHHHHC------------------------------------------------CCCCCHHHHHHHHHHHHH
Q 048743 396 LEAAHDILDDMELA------------------------------------------------GHPMDSTTYKSLLTAYYK 427 (653)
Q Consensus 396 ~~~a~~~~~~m~~~------------------------------------------------g~~p~~~~~~~li~~~~~ 427 (653)
+++|...|++..+. ..+.+..++..+..+|.+
T Consensus 211 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~ 290 (311)
T 3nf1_A 211 FKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR 290 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH
Confidence 99999999998752 112245678889999999
Q ss_pred cCChHHHHHHHHHHHH
Q 048743 428 VKMFREAEALLKQMRK 443 (653)
Q Consensus 428 ~~~~~~a~~~~~~m~~ 443 (653)
.|++++|...|++..+
T Consensus 291 ~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 291 QGKFEAAETLEEAAMR 306 (311)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998876
No 66
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.05 E-value=1.3e-07 Score=97.49 Aligned_cols=92 Identities=14% Similarity=0.070 Sum_probs=45.0
Q ss_pred HHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHH
Q 048743 24 RKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSL 103 (653)
Q Consensus 24 ~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~ 103 (653)
.+...+.+.|++++|.+.|+...+.+ .+ ..+..+-..+...|+....++|...|.+.... +...+..+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g-~~--~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG-YS--EAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-CC--TGGGTCC---------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-CH--HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHH
Confidence 45667788999999999999988753 33 33333333344456654468999999887532 555566666655
Q ss_pred HhcC-----CCchHHHHHHHHHcCc
Q 048743 104 ARAQ-----MPVPASMILRLMLGRE 123 (653)
Q Consensus 104 ~~~g-----~~~~a~~~~~~m~~~g 123 (653)
...+ ++++|+.+|++..+.|
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g 104 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANG 104 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTT
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555 6678999999988765
No 67
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.05 E-value=1.6e-07 Score=94.43 Aligned_cols=246 Identities=12% Similarity=0.001 Sum_probs=168.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----ccHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--C-C
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES----TLCSDVIDALIQLGFLEAAHDILDDMELA----GHP--M-D 414 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p-~ 414 (653)
.++.+-..+...|++++|...+++.........+. .++..+...+...|++++|...+++..+. +.. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 45667778889999999999999876533111222 22566778888999999999999987542 222 3 2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHcc
Q 048743 415 STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEA 494 (653)
Q Consensus 415 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~ 494 (653)
..++..+...+...|++++|...+++..+..-.............+. ..+...|++++|...+++.....
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la----------~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI----------QCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHHH
Confidence 34667788889999999999999999876432211111111111111 12345899999999999887543
Q ss_pred CCCC-HHHHH-----HHHHHHHcCCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 048743 495 ALST-IYKLN-----SSIYFFCKGKMIGDALKIYRRMQEMKIRPT---VETFYYLVYGHSSLEMYRDITILWGDIKRNIE 565 (653)
Q Consensus 495 ~~p~-~~~y~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 565 (653)
-.++ ...+. ..+..+...|++++|..++++.......++ ...+..+...+...|++++|...++.......
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 205 GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2221 11222 233447799999999999998776432211 23566778889999999999999998876655
Q ss_pred hCCCccCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 048743 566 SGVLAVSR-DLYETLLLNFLQGGYFERVMEVIGYMKK 601 (653)
Q Consensus 566 ~~~~~p~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~ 601 (653)
..+..++. ..+..+..++...|+.++|...+++...
T Consensus 285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 285 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55544444 3666677888999999999999988754
No 68
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.05 E-value=5.5e-07 Score=90.47 Aligned_cols=284 Identities=10% Similarity=-0.076 Sum_probs=182.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCccHH----HHHHHHHHHHhcCChhhhHHHHHHhhhcCC--CcccchhHHHH
Q 048743 181 NLVLHACVRFGSSLKGQHIMELMSQTGVVADAH----SIIILAQIHEMNCQRDELKKFKCYIDQLST--PFAHHYQQFYE 254 (653)
Q Consensus 181 n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~ 254 (653)
...-..+...|++++|...+++.....-..+.. ++..+...+...|++++|.+.++....... +.......+++
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334456677999999999999987653222222 355666778889999999998888765421 11222234567
Q ss_pred HHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHH
Q 048743 255 SLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVL 334 (653)
Q Consensus 255 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (653)
.+...+...|++++|...+++..+.
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~------------------------------------------------------- 122 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQL------------------------------------------------------- 122 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH-------------------------------------------------------
Confidence 7888899999999999999988320
Q ss_pred HhcCCCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048743 335 FRNGKLL--HS-NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG---ESTLCSDVIDALIQLGFLEAAHDILDDMEL 408 (653)
Q Consensus 335 ~~~~~~~--p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 408 (653)
....+.. |. ...+..+-..+...|++++|...+++......... ...+|..+...+...|++++|...+++...
T Consensus 123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0111111 32 23556677888899999999999998765441111 123467778888889999999999988754
Q ss_pred CCCCC-C-HHHHH----HHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHH
Q 048743 409 AGHPM-D-STTYK----SLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDL 482 (653)
Q Consensus 409 ~g~~p-~-~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 482 (653)
..-.+ + ..... ..+..+...|++++|...++...... |....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~------------------------------ 250 (373)
T 1hz4_A 203 LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE--FANNH------------------------------ 250 (373)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC--CTTCG------------------------------
T ss_pred HHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC--CCcch------------------------------
Confidence 31111 1 11111 22344678888888888877664321 11000
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc----CCCCCH-HHHHHHHHHHhccCCHHHHHHHH
Q 048743 483 AESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM----KIRPTV-ETFYYLVYGHSSLEMYRDITILW 557 (653)
Q Consensus 483 a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~t~~~li~~~~~~~~~~~a~~~~ 557 (653)
.....+..+...+...|++++|.+.+++.... |..++. ..+..+..++...|+.++|...+
T Consensus 251 --------------~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 251 --------------FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp --------------GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred --------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 01223456667777888888888888877642 222222 25556667788888899988888
Q ss_pred HHHHHHhh
Q 048743 558 GDIKRNIE 565 (653)
Q Consensus 558 ~~~~~~~~ 565 (653)
+.......
T Consensus 317 ~~al~~~~ 324 (373)
T 1hz4_A 317 LDALKLAN 324 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 87765433
No 69
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.04 E-value=8.2e-08 Score=96.78 Aligned_cols=321 Identities=10% Similarity=-0.040 Sum_probs=191.8
Q ss_pred CCchhhHHHHHHHH--HhcCChhhHHHHHHHHHhc--CCCccHHH--HHHHHHH--HHhcCChhhhH---------HHHH
Q 048743 174 KPDTMIFNLVLHAC--VRFGSSLKGQHIMELMSQT--GVVADAHS--IIILAQI--HEMNCQRDELK---------KFKC 236 (653)
Q Consensus 174 ~~~~~~yn~li~~~--~~~g~~~~a~~l~~~m~~~--g~~p~~~t--~~~ll~~--~~~~g~~~~a~---------~~~~ 236 (653)
.|+..+-+.|-..| .+.+++++|.+++++..+. .+..|... |-.++.. ..-.+...... +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 35555556666666 7899999999999998764 23333333 3333332 11123333333 5555
Q ss_pred HhhhcCCCcccc-hhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccch
Q 048743 237 YIDQLSTPFAHH-YQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMP 315 (653)
Q Consensus 237 ~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (653)
.+.....+.... .-..+...-..+...|++++|...|++..+.....++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------------------ 136 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD------------------------------ 136 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC------------------------------
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC------------------------------
Confidence 554432111000 0012233344556789999999999887321100000
Q ss_pred hhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-----CcccHHHHHHHH
Q 048743 316 ELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG-----ESTLCSDVIDAL 390 (653)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~~li~~~ 390 (653)
......++..+-..|...|++++|...+.+........+ ...+++.+...|
T Consensus 137 ------------------------~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 137 ------------------------DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 001124667788888889999998888887654321111 133477788888
Q ss_pred HHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhh
Q 048743 391 IQLGFLEAAHDILDDMELA----GHPM-DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVAD 465 (653)
Q Consensus 391 ~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~ 465 (653)
...|++++|...|.+..+. +-.+ ...++..+-..|...|++++|...|++..+..-..
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~----------------- 255 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK----------------- 255 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-----------------
Confidence 8888888888888876542 1111 12466677777888888888888877766521000
Q ss_pred hcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---CCC-HHHHHHHH
Q 048743 466 KSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKI---RPT-VETFYYLV 541 (653)
Q Consensus 466 ~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~-~~t~~~li 541 (653)
.. .....++..+...|.+.|++++|.+.+++..+... .|. ...+..+-
T Consensus 256 ---------------------------~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 307 (378)
T 3q15_A 256 ---------------------------VP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQ 307 (378)
T ss_dssp ---------------------------CG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHH
T ss_pred ---------------------------CC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 00 01245667788888889999999999988876321 122 33455565
Q ss_pred HHHhccCC---HHHHHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 542 YGHSSLEM---YRDITILWGDIKRNIESGVLAV-SRDLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 542 ~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
..+...++ +.+|..+++.. +..| ....+..+...|...|++++|.+.|++..
T Consensus 308 ~ly~~~~~~~~~~~al~~~~~~-------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 308 AVYKETVDERKIHDLLSYFEKK-------NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHSSSCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHhC-------CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66777777 66666666432 2222 33456677888889999999998888775
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.04 E-value=9.3e-09 Score=106.92 Aligned_cols=196 Identities=9% Similarity=-0.051 Sum_probs=131.7
Q ss_pred CCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048743 342 HSNRAMAKLINGYKKHGKN-SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS 420 (653)
Q Consensus 342 p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 420 (653)
.+...+..+-..+...|++ ++|++.|++..+.. |.+...|..+...|.+.|++++|...|++..+.. |+...+..
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 175 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQN 175 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHH
Confidence 3566778888888999999 99999999988887 7777789999999999999999999999988754 67788888
Q ss_pred HHHHHHHc---------CChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHH
Q 048743 421 LLTAYYKV---------KMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMR 491 (653)
Q Consensus 421 li~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 491 (653)
+...|... |++++|...|++..+. .|+
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~------------------------------------------ 211 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVL------------------------------------------ 211 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTT------------------------------------------
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCC------------------------------------------
Confidence 88888888 7888888888777763 344
Q ss_pred HccCCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 492 EEAALSTIYKLNSSIYFFCKG--------KMIGDALKIYRRMQEMKIR--PTVETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 492 ~~~~~p~~~~y~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~--p~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
+...|..+..+|... |++++|++.|++..+.... -+...|..+..+|...|++++|.+.|+...
T Consensus 212 ------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 212 ------DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233444444444444 5566666666665553110 145555556666666666666666665554
Q ss_pred HHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHH
Q 048743 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVI 596 (653)
Q Consensus 562 ~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~ 596 (653)
+. -+.+...+..+...+...|++++|.+.+
T Consensus 286 ~l-----~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 286 AL-----DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Hh-----CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 1113344555555555556555555443
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.04 E-value=2.2e-07 Score=90.66 Aligned_cols=200 Identities=10% Similarity=0.000 Sum_probs=151.4
Q ss_pred CHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHh-cCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048743 343 SNRAMAKLINGYK-------KHGKN-------SELSWLLLSIKK-EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407 (653)
Q Consensus 343 ~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~m~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 407 (653)
+...|..+...+. +.|++ ++|..+|++..+ .. |.+...|..+...+.+.|++++|..+|++..
T Consensus 49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 126 (308)
T 2ond_A 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4456666666654 45886 899999999988 35 6677779999999999999999999999998
Q ss_pred HCCCCCC-HH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHH
Q 048743 408 LAGHPMD-ST-TYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES 485 (653)
Q Consensus 408 ~~g~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~ 485 (653)
+. .|+ .. .|..+...+.+.|++++|..+|++..+. .|+.....+ ...... +...|+.+.|..
T Consensus 127 ~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~-~~a~~~-----------~~~~~~~~~A~~ 190 (308)
T 2ond_A 127 AI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYV-TAALME-----------YYCSKDKSVAFK 190 (308)
T ss_dssp TS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHH-HHHHHH-----------HHTSCCHHHHHH
T ss_pred hc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHH-HHHHHH-----------HHHcCCHHHHHH
Confidence 84 443 33 8999999999999999999999999874 344311111 111111 112588899999
Q ss_pred HHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 486 LIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK-IRPT--VETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 486 ~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
+|+...+.. | +...|..++..+.+.|++++|..+|++..... +.|+ ...|..++....+.|+.+.|..+++.+.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 998887654 4 67788888888888899999999999888763 4553 5567777888888888888888888776
Q ss_pred H
Q 048743 562 R 562 (653)
Q Consensus 562 ~ 562 (653)
+
T Consensus 269 ~ 269 (308)
T 2ond_A 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 4
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.03 E-value=2.6e-07 Score=90.06 Aligned_cols=221 Identities=11% Similarity=0.039 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048743 361 SELSWLLLSIKKEHHSFGESTLCSDVIDALIQ-------LGFL-------EAAHDILDDMELAGHPMDSTTYKSLLTAYY 426 (653)
Q Consensus 361 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (653)
++|..+|++..... |.+...|..+...+.. .|++ ++|..+|++..+.-.+-+...|..+...+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 68889999998877 7788888888887764 5885 899999999987422335678999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 048743 427 KVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506 (653)
Q Consensus 427 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li 506 (653)
+.|++++|..+|++..+ +.|+... .+..... ..+.+.|++++|..+|++..+... ++...|....
T Consensus 111 ~~~~~~~A~~~~~~al~--~~p~~~~-~~~~~~~-----------~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a 175 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA--IEDIDPT-LVYIQYM-----------KFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAA 175 (308)
T ss_dssp HTTCHHHHHHHHHHHHT--SSSSCTH-HHHHHHH-----------HHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHh--ccccCcc-HHHHHHH-----------HHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 99999999999999987 4565421 0111111 112247889999999999887542 2455555444
Q ss_pred HHHH-cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc--CHHHHHHHHHHH
Q 048743 507 YFFC-KGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV--SRDLYETLLLNF 583 (653)
Q Consensus 507 ~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p--~~~~y~~li~~~ 583 (653)
.... ..|++++|.++|++..+.. +-+...|..++..+.+.|++++|..+|+.... ...+.| ....|..++..+
T Consensus 176 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 176 LMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT---SGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---SSSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHH
Confidence 3322 3699999999999988752 22567788888899999999999999988762 212344 467888889888
Q ss_pred HhCCCHHHHHHHHHHHHhC
Q 048743 584 LQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 584 ~~~g~~~~a~~~~~~m~~~ 602 (653)
.+.|+.++|..+++++.+.
T Consensus 252 ~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 252 SNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHSCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999998854
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.02 E-value=3.9e-06 Score=89.81 Aligned_cols=205 Identities=7% Similarity=0.006 Sum_probs=138.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHH-HHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------C
Q 048743 343 SNRAMAKLINGYKKHGKNSELS-WLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGH---------P 412 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------~ 412 (653)
....|.....-+.+.|+.++|. .+|+...... |.+...|-..+...-+.|+++.|.++|+.+.+... .
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 5567777777777788888886 9998887654 66666677788888888999999999998876310 1
Q ss_pred CC------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCH
Q 048743 413 MD------------STTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS 480 (653)
Q Consensus 413 p~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 480 (653)
|+ ...|...+....+.|..+.|..+|....+. .|.....+......... ...++.
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~--~~~~~~~lyi~~A~lE~-----------~~~~d~ 486 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL--KKLVTPDIYLENAYIEY-----------HISKDT 486 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT--GGGSCTHHHHHHHHHHH-----------TTTSCC
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCChHHHHHHHHHHH-----------HhCCCH
Confidence 32 235777777777888889999999888775 12111111111111111 113457
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHhccCCHHHHHHHHH
Q 048743 481 DLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP--TVETFYYLVYGHSSLEMYRDITILWG 558 (653)
Q Consensus 481 ~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~~~~ 558 (653)
+.|..+|+...+.- .-+...|...++.....|+.+.|..+|++.......+ ....|...+.--...|+.+.+..+.+
T Consensus 487 e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 487 KTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888877652 1256667778887778888888888888877653322 23456666666677888888888887
Q ss_pred HHHHH
Q 048743 559 DIKRN 563 (653)
Q Consensus 559 ~~~~~ 563 (653)
.+.+.
T Consensus 566 R~~~~ 570 (679)
T 4e6h_A 566 RFFEK 570 (679)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77633
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.01 E-value=1e-05 Score=86.69 Aligned_cols=234 Identities=9% Similarity=-0.018 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 048743 361 SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAH-DILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK 439 (653)
Q Consensus 361 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 439 (653)
+.+..+|++..... |.....|-.....+...|+.+.|. ++|++.... ++.+...|-..+...-+.|+++.|..+|+
T Consensus 326 ~Rv~~~Ye~aL~~~--p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iye 402 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV--CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34567788877765 667777888888888999999996 999998863 55677778888888999999999999999
Q ss_pred HHHHcCC---------ccCc---------hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHc-c-CCCCH
Q 048743 440 QMRKSCL---------VQNL---------SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE-A-ALSTI 499 (653)
Q Consensus 440 ~m~~~~~---------~p~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~-~-~~p~~ 499 (653)
.+.+... .|+. ....+.. ....+ ..+.|+++.|..+|....+. + ..+.+
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi-~y~~~----------erR~~~l~~AR~vf~~A~~~~~~~~~~l 471 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC-VYMNT----------MKRIQGLAASRKIFGKCRRLKKLVTPDI 471 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-HHHHH----------HHHHHCHHHHHHHHHHHHHTGGGSCTHH
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH-HHHHH----------HHHcCCHHHHHHHHHHHHHhcCCCChHH
Confidence 9986410 1321 0111111 11111 12467899999999998875 2 22334
Q ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHH
Q 048743 500 YKLNSSIYFFCKG-KMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYET 578 (653)
Q Consensus 500 ~~y~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~ 578 (653)
....+.+. .+. ++.+.|.++|+...+. ++-+...+...++-....|+.+.|..+|+....... ...-....|..
T Consensus 472 yi~~A~lE--~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~--~~~~~~~lw~~ 546 (679)
T 4e6h_A 472 YLENAYIE--YHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS--DSHLLKMIFQK 546 (679)
T ss_dssp HHHHHHHH--HTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS--STTHHHHHHHH
T ss_pred HHHHHHHH--HHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHH
Confidence 44444444 343 4589999999999886 333455566777777788999999999987752100 00114567888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048743 579 LLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEF 615 (653)
Q Consensus 579 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 615 (653)
.++--.+.|+.+.+.++.+++.+.- |+......++
T Consensus 547 ~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~ 581 (679)
T 4e6h_A 547 VIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFT 581 (679)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHH
Confidence 8888889999999999999998653 5544444444
No 75
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.99 E-value=3.8e-08 Score=87.76 Aligned_cols=96 Identities=14% Similarity=-0.056 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (653)
..+..+...+...++++.|...+.+..... |.+...+..+...|.+.|++++|.+.|++..+.. +-+..+|..+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~ 150 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLA 150 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHH
Confidence 345556666777777777777777777666 6666667777777777888888888887776643 2356677777777
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 048743 425 YYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 425 ~~~~~~~~~a~~~~~~m~~ 443 (653)
|.+.|++++|...|++..+
T Consensus 151 ~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 151 YEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHh
Confidence 8888888888888777765
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.99 E-value=9.4e-09 Score=106.87 Aligned_cols=187 Identities=10% Similarity=-0.007 Sum_probs=148.7
Q ss_pred hhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCh-hhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHH
Q 048743 193 SLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQR-DELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGE 271 (653)
Q Consensus 193 ~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 271 (653)
++++.+.+++..... ..+...+..+...+...|++ ++|.+.++...+..+.. ..+|..+-.+|.+.|++++|..
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHH
Confidence 556666666655432 22455577777778888888 88888888777654322 3368899999999999999999
Q ss_pred HHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHH
Q 048743 272 LILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLI 351 (653)
Q Consensus 272 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 351 (653)
.|++..+ ..|+...+..+-
T Consensus 159 ~~~~al~-------------------------------------------------------------~~p~~~~~~~lg 177 (474)
T 4abn_A 159 CFSGALT-------------------------------------------------------------HCKNKVSLQNLS 177 (474)
T ss_dssp HHHHHHT-------------------------------------------------------------TCCCHHHHHHHH
T ss_pred HHHHHHh-------------------------------------------------------------hCCCHHHHHHHH
Confidence 9998832 347777888888
Q ss_pred HHHHhc---------CChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCC--
Q 048743 352 NGYKKH---------GKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL--------GFLEAAHDILDDMELAGHP-- 412 (653)
Q Consensus 352 ~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~-- 412 (653)
..+... |++++|...|++..+.. |.+...|..+..+|... |++++|...|++..+....
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 889898 99999999999999887 77888899999999998 9999999999999875310
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC
Q 048743 413 MDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN 449 (653)
Q Consensus 413 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 449 (653)
-+...|..+..+|...|++++|...|++..+. .|+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~ 290 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPA 290 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 37888999999999999999999999998773 454
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.98 E-value=5.7e-08 Score=98.17 Aligned_cols=239 Identities=8% Similarity=0.001 Sum_probs=164.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCC----CcccHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC---C-CCHHHHH
Q 048743 350 LINGYKKHGKNSELSWLLLSIKKEHHSFG----ESTLCSDVIDALIQLGFLEAAHDILDDMELA--GH---P-MDSTTYK 419 (653)
Q Consensus 350 li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~---~-p~~~~~~ 419 (653)
.-..+...|++++|...|++........+ ...+|..+...|...|+++.|...+.+..+. .. . ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44566788999999999998876421112 2345888888899999999999988887542 11 1 1235677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCH
Q 048743 420 SLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499 (653)
Q Consensus 420 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 499 (653)
.+-..|...|++++|...|++..+.. +.. ++.. ...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~--~~~---------------------------~~~~---------------~~~ 224 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMA--EAE---------------------------KQPQ---------------LMG 224 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--HHT---------------------------TCHH---------------HHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHH--HHc---------------------------CChH---------------HHH
Confidence 78888888899999988888776531 110 0000 023
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHH
Q 048743 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEM----KI-RPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRD 574 (653)
Q Consensus 500 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~ 574 (653)
.+|+.+-..|...|++++|++.|++..+. +. +....++..+...+...|++++|..+++...+..+..+-.....
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46788889999999999999999998862 33 22356788999999999999999999998876544433333344
Q ss_pred HHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCCCHHhHHHHH---HHhhhhhHHhhhhhHHHHHH
Q 048743 575 LYETLLLNFLQGGY---FERVMEVIGYMKKQNMYVDKLMYKSEF---LKHHKHLYRRLKVSNARTEA 635 (653)
Q Consensus 575 ~y~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~t~~~l~---~~~~~~~~~~~~~~~~~~~~ 635 (653)
.+..+-..+...|+ +++|+.++++. +..|+.......+ ....|+.++|.+..+...+.
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 46777778888999 67777776655 4445443333222 55667888887777766653
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.96 E-value=6.2e-07 Score=90.29 Aligned_cols=171 Identities=7% Similarity=-0.087 Sum_probs=124.4
Q ss_pred HHHHHHhcCChhhhHHHHHHhhhcCC--CcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhccccc
Q 048743 218 LAQIHEMNCQRDELKKFKCYIDQLST--PFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKP 295 (653)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 295 (653)
....+...|++++|...++....... ++......++..+-..|...|+++.|...+++..+..
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~--------------- 171 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY--------------- 171 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH---------------
Confidence 34445677888888887777665421 2222334578889999999999999999998873200
Q ss_pred chhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048743 296 YLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNG-KLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKE 373 (653)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 373 (653)
... +..+ ...+++.+-..|...|++++|...|++..+.
T Consensus 172 ----------------------------------------~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 211 (378)
T 3q15_A 172 ----------------------------------------QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL 211 (378)
T ss_dssp ----------------------------------------HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------------------------HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 000 0111 2346788899999999999999999887653
Q ss_pred CC----CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048743 374 HH----SFGESTLCSDVIDALIQLGFLEAAHDILDDMEL-----AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 374 ~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
.. ......++..+...|...|++++|...|++..+ .. +....++..+...|.+.|++++|...+++..+.
T Consensus 212 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 212 AMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 21 111233578889999999999999999999876 33 233678888999999999999999999998874
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.96 E-value=8.7e-08 Score=85.17 Aligned_cols=162 Identities=10% Similarity=0.047 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY 425 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (653)
.|..+...+...|++++|...++++.... +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45667777778888888888888777655 5566667777788888888888888888776642 33566777777777
Q ss_pred HHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 048743 426 YKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSS 505 (653)
Q Consensus 426 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~l 505 (653)
...|++++|...+++..+. .|+ +...+..+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~------------------------------------------------~~~~~~~~ 116 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPI------------------------------------------------NFNVRFRL 116 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTT------------------------------------------------CHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcH------------------------------------------------hHHHHHHH
Confidence 7778888887777777653 232 33445555
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 506 IYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 506 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|..+++.+.
T Consensus 117 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 117 GVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556666666666666666665542 2234555566666666666666666665554
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.93 E-value=1.5e-07 Score=83.64 Aligned_cols=165 Identities=16% Similarity=0.051 Sum_probs=134.3
Q ss_pred HHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhH
Q 048743 251 QFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQ 330 (653)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (653)
..+..+...+...|++++|...|++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~---------------------------------------------------- 36 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYD---------------------------------------------------- 36 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCC----------------------------------------------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------------------------------------------
Confidence 3577788888999999999999988832
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048743 331 ELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG 410 (653)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 410 (653)
..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+..
T Consensus 37 --------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 106 (186)
T 3as5_A 37 --------ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106 (186)
T ss_dssp --------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred --------hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 012345678889999999999999999999998876 7777789999999999999999999999998753
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHH
Q 048743 411 HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEM 490 (653)
Q Consensus 411 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m 490 (653)
+.+...+..+...+...|++++|...+++..+.. |+
T Consensus 107 -~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------------- 142 (186)
T 3as5_A 107 -PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PN----------------------------------------- 142 (186)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------------------------------
T ss_pred -cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--cc-----------------------------------------
Confidence 3477888889999999999999999999887642 33
Q ss_pred HHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 048743 491 REEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528 (653)
Q Consensus 491 ~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 528 (653)
+...|..+...|...|++++|.+.+++..+.
T Consensus 143 -------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 143 -------EGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3445667777777788888888888777653
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.89 E-value=3.2e-08 Score=94.93 Aligned_cols=211 Identities=12% Similarity=0.059 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC------C-
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKE------HHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA------G- 410 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g- 410 (653)
..++..+...|...|++++|...+++.... +..+....+|..+...|...|++++|...|.+..+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 456778888888889998888888887654 212333455778888888888888888888877553 1
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHH
Q 048743 411 HPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSC---LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLI 487 (653)
Q Consensus 411 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~ 487 (653)
.+....+|..+...|...|++++|...|++..+.. ..++
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------------- 164 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD-------------------------------------- 164 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT--------------------------------------
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--------------------------------------
Confidence 12234567777778888888888888887776530 0011
Q ss_pred HHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-------CCCCCHHH-HHHHHHHHhccCCHHHHHHHHH
Q 048743 488 QEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEM-------KIRPTVET-FYYLVYGHSSLEMYRDITILWG 558 (653)
Q Consensus 488 ~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~t-~~~li~~~~~~~~~~~a~~~~~ 558 (653)
.| ...++..+...|...|++++|++++++..+. ...+.... +..+.......+....+.. +.
T Consensus 165 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 235 (283)
T 3edt_B 165 --------DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YG 235 (283)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------
T ss_pred --------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HH
Confidence 12 3456778888888999999999999888753 22333333 3333333333332222222 22
Q ss_pred HHHHHhhhCC--CccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 048743 559 DIKRNIESGV--LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601 (653)
Q Consensus 559 ~~~~~~~~~~--~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 601 (653)
.+....+..+ ......++..+...|...|++++|.+++++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 236 EYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2211111111 122445678889999999999999999998764
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.87 E-value=1.2e-07 Score=102.66 Aligned_cols=168 Identities=12% Similarity=0.051 Sum_probs=130.1
Q ss_pred CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048743 341 LHSN-RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYK 419 (653)
Q Consensus 341 ~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 419 (653)
.|+. ..|+.|-..+.+.|++++|++.|++..+.. |.+...|..+-.+|.+.|++++|...|++..+... -+...|.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~ 81 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYS 81 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 3543 478888888889999999999999888877 77777888888888899999999999888877532 2577888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCH
Q 048743 420 SLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499 (653)
Q Consensus 420 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 499 (653)
.+-.+|...|++++|++.|++..+. .|+ +.
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l--~P~------------------------------------------------~~ 111 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQI--NPA------------------------------------------------FA 111 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTT------------------------------------------------CH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCC------------------------------------------------CH
Confidence 8888888888888888888887763 444 45
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 048743 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT-VETFYYLVYGHSSLEMYRDITILWGDIKRN 563 (653)
Q Consensus 500 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~~~ 563 (653)
..|+.+-..|.+.|++++|++.|++..+. .|+ ...|..+..++...|++++|.+.++.+.+.
T Consensus 112 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 112 DAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 56777777888888888888888887764 343 566777888888888888888877776543
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.81 E-value=1.4e-07 Score=102.30 Aligned_cols=165 Identities=12% Similarity=-0.026 Sum_probs=137.1
Q ss_pred hhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhh
Q 048743 249 YQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEG 328 (653)
Q Consensus 249 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (653)
+..+|+.|-..|.+.|++++|.+.|++..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~-------------------------------------------------- 37 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE-------------------------------------------------- 37 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------------------------------
Confidence 455789999999999999999999998842
Q ss_pred hHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048743 329 KQELVLFRNGKLLHS-NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407 (653)
Q Consensus 329 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 407 (653)
+.|+ ...|+.+-.+|.+.|++++|+..|++..+.. |.+...|..+..+|.+.|++++|.+.|++..
T Consensus 38 -----------l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl 104 (723)
T 4gyw_A 38 -----------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNTLKEMQDVQGALQCYTRAI 104 (723)
T ss_dssp -----------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2343 4688899999999999999999999999887 8888889999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHH
Q 048743 408 LAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLI 487 (653)
Q Consensus 408 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~ 487 (653)
+... -+...|+.+-.+|...|++++|+..|++..+ +.|+
T Consensus 105 ~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~-------------------------------------- 143 (723)
T 4gyw_A 105 QINP-AFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPD-------------------------------------- 143 (723)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSC--------------------------------------
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC--------------------------------------
Confidence 7532 3678999999999999999999999999887 3465
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 048743 488 QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527 (653)
Q Consensus 488 ~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 527 (653)
+...|..+...|...|++++|.+.+++..+
T Consensus 144 ----------~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 144 ----------FPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp ----------CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred ----------ChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 345566777777777777777777766653
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.80 E-value=1.8e-07 Score=89.57 Aligned_cols=203 Identities=14% Similarity=0.056 Sum_probs=143.6
Q ss_pred HhcCChhhHHHHHHHHHhc-------CCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcC----CCcccchhHHHHHH
Q 048743 188 VRFGSSLKGQHIMELMSQT-------GVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLS----TPFAHHYQQFYESL 256 (653)
Q Consensus 188 ~~~g~~~~a~~l~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~l 256 (653)
...|++++|..+|++..+. .......++..+...+...|++++|...++...... .++......++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777776666542 111233447778888888888888888887776541 11223345578999
Q ss_pred HHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHh
Q 048743 257 LSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFR 336 (653)
Q Consensus 257 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (653)
...|...|++++|...|++..+.. . -.
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~--------------------------------------~---------------~~ 118 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIR--------------------------------------E---------------KV 118 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHH--------------------------------------H---------------HH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHH--------------------------------------H---------------HH
Confidence 999999999999999999883200 0 00
Q ss_pred cCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048743 337 NGKLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKE------HHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409 (653)
Q Consensus 337 ~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 409 (653)
...-.| ...++..+...+...|++++|...+++.... ...+....++..+...|.+.|++++|...|++..+.
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 001112 2457788999999999999999999998765 112334556888999999999999999999988653
Q ss_pred ------------------------------------------------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 048743 410 ------------------------------------------------GHPMDSTTYKSLLTAYYKVKMFREAEALLKQM 441 (653)
Q Consensus 410 ------------------------------------------------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 441 (653)
..+....++..+...|...|++++|..+|++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 199 AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11223457788899999999999999999887
Q ss_pred HH
Q 048743 442 RK 443 (653)
Q Consensus 442 ~~ 443 (653)
.+
T Consensus 279 l~ 280 (283)
T 3edt_B 279 SR 280 (283)
T ss_dssp HT
T ss_pred HH
Confidence 65
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.73 E-value=1.1e-06 Score=81.14 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHhc
Q 048743 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT---VETFYYLVYGHSS 546 (653)
Q Consensus 501 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~ 546 (653)
.|..+-..+...|++++|++.|++. ....|+ ...+..+...+..
T Consensus 119 ~~~~~g~~~~~~~~~~~A~~~~~~a--l~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 119 YYLKEGQKFQQAGNIEKAEENYKHA--TDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH--TTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhccHHHHHHHHHHH--HhcCCCcccHHHHHHHHHHHHH
Confidence 4555556666666666666666653 244554 2344444444433
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.71 E-value=1.8e-06 Score=79.74 Aligned_cols=198 Identities=12% Similarity=-0.008 Sum_probs=139.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048743 342 HSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSF-GESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS 420 (653)
Q Consensus 342 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 420 (653)
.+...+...-..+...|++++|...|++..+.. + ++...+..+...+.+.|++++|...|++..+... -+...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHH
Confidence 355778888889999999999999999999877 4 6666677799999999999999999999987642 25678889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCccCchhh-HHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCC-
Q 048743 421 LLTAYYKVKMFREAEALLKQMRKSCLVQNLSCE-MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALST- 498 (653)
Q Consensus 421 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~- 498 (653)
+...|...|++++|...|++..+. .|+.... ......... ....+...|++++|...|++..+.. |+
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~A~~~~~~al~~~--p~~ 150 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLK-------EGQKFQQAGNIEKAEENYKHATDVT--SKK 150 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH-------HHHHHHHTTCHHHHHHHHHHHTTSS--CHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHH-------HhHHHHHhccHHHHHHHHHHHHhcC--CCc
Confidence 999999999999999999999874 4554211 000000000 0122446899999999999998864 54
Q ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 499 --IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 499 --~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
...|..+...|...| ..+++++...+ ..+...|.... ....+.+++|...++...
T Consensus 151 ~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 151 WKTDALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAV 207 (228)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 456777777775443 44556655543 22344444333 233455677777777665
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.70 E-value=9.3e-07 Score=73.52 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048743 347 MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426 (653)
Q Consensus 347 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (653)
|..+...+...|++++|..+++++.... +.+...+..+...+...|++++|...|+++.+.+ +.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3444445555555555555555554443 3333444445555555555555555555544432 123344444444444
Q ss_pred HcCChHHHHHHHHHHHH
Q 048743 427 KVKMFREAEALLKQMRK 443 (653)
Q Consensus 427 ~~~~~~~a~~~~~~m~~ 443 (653)
..|++++|...++.+.+
T Consensus 81 ~~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALE 97 (136)
T ss_dssp TTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44445544444444443
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.64 E-value=3e-06 Score=80.20 Aligned_cols=184 Identities=13% Similarity=0.031 Sum_probs=128.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHH
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGE---STLCSDVIDALIQLGFLEAAHDILDDMELAGH-PM-DSTT 417 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p-~~~~ 417 (653)
+...+..+-..+.+.|++++|...|+++.... |.+ ...+..+...|.+.|++++|...|++..+... .| ....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45667778888899999999999999999876 555 55688888999999999999999999987532 12 2456
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHH
Q 048743 418 YKSLLTAYYK--------VKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQE 489 (653)
Q Consensus 418 ~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 489 (653)
+..+..++.. .|++++|...|++..+. .|+... ...+...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~---------------------------~~~a~~~~~~ 142 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHEL---------------------------VDDATQKIRE 142 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTT---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchh---------------------------HHHHHHHHHH
Confidence 7777788888 89999999999999874 354311 1111111111
Q ss_pred HHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHhcc----------CCHHHHHHHH
Q 048743 490 MREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP--TVETFYYLVYGHSSL----------EMYRDITILW 557 (653)
Q Consensus 490 m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~----------~~~~~a~~~~ 557 (653)
+... ....+-.+...|.+.|++++|+..|++..+..... ....+..+..+|... |++++|...+
T Consensus 143 ~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 143 LRAK----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp HHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 1110 11124556677788888888888888887742211 234566666666655 7778888888
Q ss_pred HHHH
Q 048743 558 GDIK 561 (653)
Q Consensus 558 ~~~~ 561 (653)
+.+.
T Consensus 219 ~~~~ 222 (261)
T 3qky_A 219 ERLL 222 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.63 E-value=9.1e-07 Score=73.59 Aligned_cols=130 Identities=19% Similarity=0.120 Sum_probs=110.9
Q ss_pred HHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHH
Q 048743 252 FYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQE 331 (653)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (653)
.|..+...|...|++++|..+|+++.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------------------------------------- 30 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL---------------------------------------------------- 30 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------------------------------------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc----------------------------------------------------
Confidence 4778888899999999999999998320
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048743 332 LVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGH 411 (653)
Q Consensus 332 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 411 (653)
.+.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+..
T Consensus 31 --------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 99 (136)
T 2fo7_A 31 --------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD- 99 (136)
T ss_dssp --------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-
T ss_pred --------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 11245677888899999999999999999998877 6667778999999999999999999999998754
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048743 412 PMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 412 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
+.+..++..+...+.+.|++++|...|+++.+.
T Consensus 100 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 346788899999999999999999999998764
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.63 E-value=1e-06 Score=85.06 Aligned_cols=95 Identities=5% Similarity=-0.063 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCH
Q 048743 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV------ETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR 573 (653)
Q Consensus 500 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~ 573 (653)
.+|+.+...|.+.|++++|++.|++..+....... ..|..+..++...|++++|...|+... .+.|+.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------~l~p~~ 232 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ------SEDPNF 232 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG------CC----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hhCCCC
Confidence 46788889999999999999999999875433222 156777788899999999999998764 334432
Q ss_pred ------HHHHHHHHHHH--hCCCHHHHHHHHHHHH
Q 048743 574 ------DLYETLLLNFL--QGGYFERVMEVIGYMK 600 (653)
Q Consensus 574 ------~~y~~li~~~~--~~g~~~~a~~~~~~m~ 600 (653)
..+..++.++. ..+++++|++.|+++.
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 23444566664 4567888888887654
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.56 E-value=4.6e-06 Score=79.14 Aligned_cols=180 Identities=8% Similarity=-0.064 Sum_probs=112.6
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 048743 363 LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGH-PMDSTTYKSLLTAYYKVKMFREAEALLKQM 441 (653)
Q Consensus 363 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 441 (653)
|+..|++....+ +++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+++.|.+.++.|
T Consensus 85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 778888877665 44445567888999999999999999999877654 236678888999999999999999999999
Q ss_pred HHcCCccC------chhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCH
Q 048743 442 RKSCLVQN------LSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMI 515 (653)
Q Consensus 442 ~~~~~~p~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~ 515 (653)
.+. .|| .....+.... ..+.. ..++...|..+|+++.+.. |+..+-..++.++.+.|++
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~-v~l~~----------g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~ 227 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESY-IKFAT----------NKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNI 227 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHH-HHHHH----------TCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCH
T ss_pred Hhc--CccccccchHHHHHHHHHH-HHHHh----------CCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCH
Confidence 874 462 1111111110 11111 1236677777777765543 4322223333366667777
Q ss_pred HHHHHHHHHHHhc-----CC---CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 516 GDALKIYRRMQEM-----KI---RP-TVETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 516 ~~a~~~~~~m~~~-----g~---~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
++|.+.++.+.+. +. .| |..++..+|......|+ +|.++++++.
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~ 280 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLV 280 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHH
Confidence 7777777655442 10 13 34445344444444554 5666666654
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.55 E-value=6.1e-06 Score=78.29 Aligned_cols=184 Identities=10% Similarity=0.058 Sum_probs=128.7
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHH
Q 048743 196 GQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILD 275 (653)
Q Consensus 196 a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 275 (653)
|...|++..+.+ .++..++..+..++...|+.++|.+++......++ ...+...+..++..|.+.|+++.|.+.+++
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~--~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE--AEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566677666554 45555566777778888888888888777644332 012334678889999999999999999999
Q ss_pred hcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCC-----CHHHHHHH
Q 048743 276 MNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLH-----SNRAMAKL 350 (653)
Q Consensus 276 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~~~~~l 350 (653)
|.+ ..| +..+...+
T Consensus 162 ~~~-------------------------------------------------------------~~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 162 YTN-------------------------------------------------------------AIEDTVSGDNEMILNL 180 (310)
T ss_dssp HHH-------------------------------------------------------------HSCHHHHHHHHHHHHH
T ss_pred HHh-------------------------------------------------------------cCccccccchHHHHHH
Confidence 832 334 24455556
Q ss_pred HHHHH--h--cCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C----CCCCHHH
Q 048743 351 INGYK--K--HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA-----G----HPMDSTT 417 (653)
Q Consensus 351 i~~~~--~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g----~~p~~~~ 417 (653)
..++. . .++..+|..+|+++.... |+..+-..++.++.+.|++++|.+.++.+.+. + -+-|+.+
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~ 257 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTF 257 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHH
Confidence 65533 3 348999999999997654 33222445555899999999999999976542 1 1346777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 418 YKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 418 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
+..+|......|+ +|.++++++.+. .|+.
T Consensus 258 LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 258 LANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred HHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 8677777777787 889999999884 5664
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.55 E-value=3.1e-06 Score=76.92 Aligned_cols=92 Identities=7% Similarity=-0.005 Sum_probs=53.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHH----------------HHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 048743 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSD----------------VIDALIQLGFLEAAHDILDDMELAGHP 412 (653)
Q Consensus 349 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~g~~ 412 (653)
.....+.+.|++++|...|++..+.. |.+...|.. +...|.+.|++++|...|++..+.. +
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 85 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-P 85 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
Confidence 44455667888888888888887766 544444444 5555555555555555555554432 1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 413 MDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 413 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
-+...|..+-..+...|++++|...|++..+
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2444555555555555555555555555544
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.50 E-value=4.2e-06 Score=80.69 Aligned_cols=207 Identities=11% Similarity=-0.074 Sum_probs=145.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhc----CCCcc-HHHHHHHHHHHHhcCChhhhHHHHHHhhhcCC--CcccchhH
Q 048743 179 IFNLVLHACVRFGSSLKGQHIMELMSQT----GVVAD-AHSIIILAQIHEMNCQRDELKKFKCYIDQLST--PFAHHYQQ 251 (653)
Q Consensus 179 ~yn~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~ 251 (653)
.|+.....|...|++++|.+.|++..+. |-.++ ..+|..+..+|.+.|++++|...++....... .....-..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4666677888999999999999988753 32222 45688999999999999999998888766421 11111234
Q ss_pred HHHHHHHhhhcc-CCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhH
Q 048743 252 FYESLLSLHFKF-DDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQ 330 (653)
Q Consensus 252 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (653)
+++.+-.+|... |++++|...|++..+.
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--------------------------------------------------- 147 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEW--------------------------------------------------- 147 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH---------------------------------------------------
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH---------------------------------------------------
Confidence 788899999996 9999999999988320
Q ss_pred HHHHHhcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcc-----cHHHHHHHHHHcCCHHHHHHHHH
Q 048743 331 ELVLFRNGKLLHS-NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGEST-----LCSDVIDALIQLGFLEAAHDILD 404 (653)
Q Consensus 331 ~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~ 404 (653)
....+-.+. ..+|+.+...+.+.|++++|...|++........+... .|..+...+...|+++.|...|+
T Consensus 148 ----~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 148 ----YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp ----HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 000110011 24678889999999999999999999988662222211 36777888999999999999999
Q ss_pred HHHHCCCCCCH------HHHHHHHHHHH--HcCChHHHHHHHHHHH
Q 048743 405 DMELAGHPMDS------TTYKSLLTAYY--KVKMFREAEALLKQMR 442 (653)
Q Consensus 405 ~m~~~g~~p~~------~~~~~li~~~~--~~~~~~~a~~~~~~m~ 442 (653)
+..+. .|+. ..+..++.++. ..+++++|+..|+.+.
T Consensus 224 ~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 224 EGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp GGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 98653 2321 23445566664 3466888877776553
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.48 E-value=1.2e-05 Score=75.97 Aligned_cols=102 Identities=12% Similarity=0.020 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHh--------cCChHHHHHHHHHHHhcCCCCCCcccH-----------------HHHHHHHHHcCCHHHH
Q 048743 345 RAMAKLINGYKK--------HGKNSELSWLLLSIKKEHHSFGESTLC-----------------SDVIDALIQLGFLEAA 399 (653)
Q Consensus 345 ~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a 399 (653)
..+..+-.++.. .|++++|...|++..... |.+...+ ..+...|.+.|++++|
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 356667777777 999999999999999877 6555555 4557888899999999
Q ss_pred HHHHHHHHHCCCCC--CHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHcCCccCc
Q 048743 400 HDILDDMELAGHPM--DSTTYKSLLTAYYKV----------KMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 400 ~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
...|++..+..... ....+..+..+|... |++++|...|+...+. .|+.
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 99999998753221 245677778888766 8889999999999874 4654
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.46 E-value=3.1e-06 Score=74.57 Aligned_cols=158 Identities=10% Similarity=0.039 Sum_probs=94.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHH
Q 048743 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA-YYK 427 (653)
Q Consensus 349 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~ 427 (653)
.+...+.+.|++++|...|++..+.. |.+...+..+...+.+.|++++|...|++..... |+...+..+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 34445556666666666666655554 5555556666666666666666666666554332 232222111100 001
Q ss_pred cCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHHHHHHH
Q 048743 428 VKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKLNSSI 506 (653)
Q Consensus 428 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li 506 (653)
.+.. ..|...+++..+.. | +...+..+.
T Consensus 87 ~~~~-------------------------------------------------~~a~~~~~~al~~~--P~~~~~~~~la 115 (176)
T 2r5s_A 87 QAAE-------------------------------------------------SPELKRLEQELAAN--PDNFELACELA 115 (176)
T ss_dssp HHTS-------------------------------------------------CHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred hccc-------------------------------------------------chHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 1111 12344444444432 4 567788888
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 507 YFFCKGKMIGDALKIYRRMQEMKIRP-TVETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 507 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
..+...|++++|...|++..+....+ +...+..+...+...|+.++|...++...
T Consensus 116 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 116 VQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 88889999999999999888764332 35577788888888899888888887654
No 97
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.46 E-value=7.9e-06 Score=79.39 Aligned_cols=100 Identities=7% Similarity=-0.061 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC----C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCH-
Q 048743 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR----P-TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR- 573 (653)
Q Consensus 500 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~----p-~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~- 573 (653)
.+|+.+-..|.. |++++|++.|++..+.... + ...++..+...+...|++++|+..|+...+.....+..+..
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 455666666666 7777777777776642110 0 13456667777777778888877777766543333332222
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 574 DLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 574 ~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
..+..+...+...|++++|...|++..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 245555666667788888888777776
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.42 E-value=4e-05 Score=70.45 Aligned_cols=65 Identities=12% Similarity=-0.017 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES---TLCSDVIDALIQLGFLEAAHDILDDMELAG 410 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 410 (653)
...+..+...+.+.|++++|...|+++.... |.+. ..+..+..+|.+.|++++|...|++..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 3445566677888899999999999888765 3332 346777888888899999999998887653
No 99
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.41 E-value=1.3e-05 Score=77.82 Aligned_cols=195 Identities=12% Similarity=0.066 Sum_probs=105.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCC----cccHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 048743 352 NGYKKHGKNSELSWLLLSIKKEHHSFGE----STLCSDVIDALIQLGFLEAAHDILDDMELA----GHPM-DSTTYKSLL 422 (653)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li 422 (653)
..|...|++++|...|.+.........+ ..+|+.+...|.+.|++++|...|++..+. |-.. -..+++.+-
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666654432100001 123555555666666666666666554321 1100 123444555
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHH
Q 048743 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKL 502 (653)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y 502 (653)
..|.. |++++|+..|++..+. .|. .++.. -...+|
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~--~~~---------------------------~~~~~---------------~~~~~~ 158 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAV--FEN---------------------------EERLR---------------QAAELI 158 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHH--HHH---------------------------TTCHH---------------HHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHH--HHh---------------------------CCChh---------------HHHHHH
Confidence 55555 6666666666555431 110 00000 013467
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhc----CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccC--HHH
Q 048743 503 NSSIYFFCKGKMIGDALKIYRRMQEM----KIRPTV-ETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVS--RDL 575 (653)
Q Consensus 503 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~--~~~ 575 (653)
+.+...|.+.|++++|++.|++.... +..++. .++..+..++...|++++|...|+... . ....... ...
T Consensus 159 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~ 235 (307)
T 2ifu_A 159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHH
Confidence 77888888999999999999888762 211222 256666677777899999999988764 2 1112112 223
Q ss_pred HHHHHHHHHhCCCHHHHHHH
Q 048743 576 YETLLLNFLQGGYFERVMEV 595 (653)
Q Consensus 576 y~~li~~~~~~g~~~~a~~~ 595 (653)
...++.++ ..|+.+.+.++
T Consensus 236 l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHHH
Confidence 44555555 56777666664
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.39 E-value=3.4e-06 Score=91.75 Aligned_cols=171 Identities=11% Similarity=-0.038 Sum_probs=123.3
Q ss_pred HhcCChHHHHHHHHHHH--------hcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048743 355 KKHGKNSELSWLLLSIK--------KEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426 (653)
Q Consensus 355 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (653)
...|++++|++.+++.. +.. +.+...|..+...|.+.|++++|...|++..+.. +-+...|..+-.+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 78899999999999987 544 6667779999999999999999999999998753 237788999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCccCchhh-HHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHHHHH
Q 048743 427 KVKMFREAEALLKQMRKSCLVQNLSCE-MVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKLNS 504 (653)
Q Consensus 427 ~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~ 504 (653)
..|++++|...|++..+. .|+.... .....+ |...|++++ ...|++..+.+ | +...|..
T Consensus 479 ~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~--------------~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~ 539 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDT--FPGELAPKLALAAT--------------AELAGNTDE-HKFYQTVWSTN--DGVISAAFG 539 (681)
T ss_dssp HHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHH--------------HHHHTCCCT-TCHHHHHHHHC--TTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH--------------HHHcCChHH-HHHHHHHHHhC--CchHHHHHH
Confidence 999999999999999874 4654211 111111 223677777 77777776654 4 5667777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCC
Q 048743 505 SIYFFCKGKMIGDALKIYRRMQEMKIRPT-VETFYYLVYGHSSLEM 549 (653)
Q Consensus 505 li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~ 549 (653)
+-.+|.+.|++++|++.|++..+. .|+ ...+..+..++...++
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 777778888888888887776543 454 3455566666665555
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.39 E-value=5.9e-06 Score=72.78 Aligned_cols=82 Identities=12% Similarity=-0.015 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 048743 360 NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM-DSTTYKSLLTAYYKVKMFREAEALL 438 (653)
Q Consensus 360 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~ 438 (653)
..+|...+++..+.. |.+...+..+...+...|++++|...|++..+....+ +...+..+...+...|+.++|...|
T Consensus 90 ~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 90 ESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp SCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 345677888877776 7777778888888889999999999998888765332 3567888888888889998888888
Q ss_pred HHHHH
Q 048743 439 KQMRK 443 (653)
Q Consensus 439 ~~m~~ 443 (653)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 102
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.38 E-value=5.6e-05 Score=72.73 Aligned_cols=213 Identities=8% Similarity=-0.043 Sum_probs=140.0
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCccc---HHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048743 334 LFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTL---CSDVIDALIQLGFLEAAHDILDDMELAG 410 (653)
Q Consensus 334 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g 410 (653)
..+.+...|+..+...+...+.-.-+ .++.. .. ..+... +...+..+...|++++|..++++..+..
T Consensus 36 ~~e~g~~~~~~~~l~~i~~~l~~~~~-----~~~~~---~~--~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~ 105 (293)
T 3u3w_A 36 RIESGAVYPSMDILQGIAAKLQIPII-----HFYEV---LI--YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE 105 (293)
T ss_dssp HHHTTSCCCCHHHHHHHHHHHTCCTH-----HHHHT---TT--SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCCCHHHHHHHHHHhCcCHH-----HHhCC---CC--CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc
Confidence 44566677888877777666553321 12211 11 111111 3334677888899999999998887642
Q ss_pred C-CCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHH
Q 048743 411 H-PMDST----TYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAES 485 (653)
Q Consensus 411 ~-~p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~ 485 (653)
. .|+.. .|..+...+...+++++|...|++..+.....+....
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~-------------------------------- 153 (293)
T 3u3w_A 106 EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ-------------------------------- 153 (293)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH--------------------------------
T ss_pred cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH--------------------------------
Confidence 1 22211 2334555566667888888888887763222111000
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----c-CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHH
Q 048743 486 LIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE----M-KIRPT-VETFYYLVYGHSSLEMYRDITILWGD 559 (653)
Q Consensus 486 ~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~----~-g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~ 559 (653)
...+|+.+...|...|++++|++.|++..+ . +..+. ..+|..+...|.+.|++++|..+++.
T Consensus 154 ------------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 154 ------------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp ------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 123688888899999999999999999884 1 22222 23778888999999999999999998
Q ss_pred HHHHhhhCCCccC-HHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Q 048743 560 IKRNIESGVLAVS-RDLYETLLLNFLQGGY-FERVMEVIGYMK 600 (653)
Q Consensus 560 ~~~~~~~~~~~p~-~~~y~~li~~~~~~g~-~~~a~~~~~~m~ 600 (653)
..+..+..+..+. ..+|..+-.+|.+.|+ +++|.+.+++..
T Consensus 222 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8766555554444 5678888889999994 699998888764
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.38 E-value=8.7e-06 Score=78.19 Aligned_cols=163 Identities=10% Similarity=-0.045 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS-LLT 423 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-li~ 423 (653)
..+..+-..+.+.|++++|...|++..+.. |.+...+..+...+.+.|++++|...+++.... .|+...... ...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 344555556666666666666666666655 555555666666666666666666666665443 233332221 112
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHH
Q 048743 424 AYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503 (653)
Q Consensus 424 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~ 503 (653)
.+...++.++|...|++..+. .|+ +...+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~--~P~------------------------------------------------~~~~~~ 223 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAE--NPE------------------------------------------------DAALAT 223 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH--CTT------------------------------------------------CHHHHH
T ss_pred HHHhhcccCccHHHHHHHHhc--CCc------------------------------------------------cHHHHH
Confidence 244445555555555554442 232 556677
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRP-TVETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 504 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
.+...|...|++++|++.|.+..+..... +...+..+...+...|+.++|...++...
T Consensus 224 ~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 224 QLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 77777888888888888888877753221 24567777778888888877777776543
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.36 E-value=1.4e-05 Score=76.81 Aligned_cols=166 Identities=11% Similarity=-0.034 Sum_probs=129.7
Q ss_pred cHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhh
Q 048743 211 DAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQ 290 (653)
Q Consensus 211 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 290 (653)
+...+..+...+...|++++|...++......+... ..+..|...|.+.|++++|...+++...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~l~~~~~------------ 179 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG----EIGLLLAETLIALNRSEDAEAVLXTIPL------------ 179 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHTTCHHHHHHHHTTSCG------------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch----hHHHHHHHHHHHCCCHHHHHHHHHhCch------------
Confidence 334466777778889999999999988877654332 3688889999999999999999988832
Q ss_pred cccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHH
Q 048743 291 DAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAM-AKLINGYKKHGKNSELSWLLLS 369 (653)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~ 369 (653)
..|+.... ......+.+.++.+.|...+++
T Consensus 180 -------------------------------------------------~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~ 210 (287)
T 3qou_A 180 -------------------------------------------------QDQDTRYQGLVAQIELLXQAADTPEIQQLQQ 210 (287)
T ss_dssp -------------------------------------------------GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred -------------------------------------------------hhcchHHHHHHHHHHHHhhcccCccHHHHHH
Confidence 23444322 2333346677888889999999
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 370 IKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHP-MDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 370 m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
..... |.+...+..+...+...|++++|...|.+..+.... .+...+..+...+...|+.++|...|++-..
T Consensus 211 al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 211 QVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 98888 888888999999999999999999999999876422 1267889999999999999999888876543
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.32 E-value=5e-05 Score=69.82 Aligned_cols=91 Identities=11% Similarity=0.032 Sum_probs=69.9
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcccHH-----------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCC--
Q 048743 353 GYKKHGKNSELSWLLLSIKKEHHSFGESTLCS-----------------DVIDALIQLGFLEAAHDILDDMELAGHPM-- 413 (653)
Q Consensus 353 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-----------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p-- 413 (653)
.+...|++++|...|+++.+.. |.+...+. .+...|.+.|++++|...|+++.+.-...
T Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 182 (225)
T 2yhc_A 105 SDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA 182 (225)
T ss_dssp ---CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH
T ss_pred hhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc
Confidence 3445788999999999999876 55554442 34567888999999999999998753211
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 048743 414 DSTTYKSLLTAYYKVKMFREAEALLKQMRKSC 445 (653)
Q Consensus 414 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 445 (653)
....+..+..+|.+.|++++|.+.++.+...+
T Consensus 183 ~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 183 TRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 12568889999999999999999999888753
No 106
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.31 E-value=8.2e-05 Score=71.58 Aligned_cols=174 Identities=9% Similarity=-0.057 Sum_probs=111.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHH
Q 048743 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDS-----TTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVS 457 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~ 457 (653)
+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++..+..........
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---- 153 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ---- 153 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH----
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH----
Confidence 445566667777777777777766554221110 12223334445556666666666665542111100000
Q ss_pred hhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCC---
Q 048743 458 ERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM-KIRPT--- 533 (653)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~--- 533 (653)
...+|+.+...|...|++++|+..|++..+. ...|+
T Consensus 154 ----------------------------------------~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~ 193 (293)
T 2qfc_A 154 ----------------------------------------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc
Confidence 1347888889999999999999999988731 11222
Q ss_pred --HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccC-HHHHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 048743 534 --VETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVS-RDLYETLLLNFLQGGYFERV-MEVIGYMK 600 (653)
Q Consensus 534 --~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~a-~~~~~~m~ 600 (653)
..+|..+...|...|++++|..+++...+.....+.... ..+|..+...|.+.|++++| ...+++..
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 257888888999999999999999988755443333322 56788888899999999999 77676654
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.28 E-value=8.3e-06 Score=88.70 Aligned_cols=155 Identities=9% Similarity=-0.072 Sum_probs=118.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (653)
+...+..+..++.+.|++++|...|++..+.. |.+...|..+-.+|.+.|++++|...|++..+... -+...|..+-
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg 508 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP-GELAPKLALA 508 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCSHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 44578888899999999999999999999987 88888899999999999999999999999987542 3677889999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHH
Q 048743 423 TAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYK 501 (653)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~ 501 (653)
.+|.+.|++++ ...|++..+. .|+......... ..|...|+.++|...|++..+.+ | +...
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg-------------~~~~~~g~~~~A~~~~~~al~l~--P~~~~a 570 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLA-------------RARSAEGDRVGAVRTLDEVPPTS--RHFTTA 570 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHH-------------HHHHHTTCHHHHHHHHHTSCTTS--TTHHHH
T ss_pred HHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHH-------------HHHHHcCCHHHHHHHHHhhcccC--cccHHH
Confidence 99999999999 9999999874 465422111110 12345899999999999988754 6 4567
Q ss_pred HHHHHHHHHcCCCHHHH
Q 048743 502 LNSSIYFFCKGKMIGDA 518 (653)
Q Consensus 502 y~~li~~~~~~g~~~~a 518 (653)
|..+..++...++.+++
T Consensus 571 ~~~~~~~~~~~~~~~~~ 587 (681)
T 2pzi_A 571 RLTSAVTLLSGRSTSEV 587 (681)
T ss_dssp HHHHHHHTC-------C
T ss_pred HHHHHHHHHccCCCCCC
Confidence 77777777766664443
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.27 E-value=2.3e-05 Score=83.55 Aligned_cols=153 Identities=10% Similarity=-0.014 Sum_probs=104.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 048743 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEA 436 (653)
Q Consensus 357 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 436 (653)
.|++++|...|++..+.. +.+...|..+...|.+.|++++|...|++..+.. +-+...|..+..+|...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478889999999888776 6777778999999999999999999999988753 2367788889999999999999999
Q ss_pred HHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcC---
Q 048743 437 LLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKG--- 512 (653)
Q Consensus 437 ~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~--- 512 (653)
.|++..+. .|+........ ...|...|+.++|...|++..+.. | +...+..+...+...
T Consensus 79 ~~~~al~~--~p~~~~~~~~l-------------a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~ 141 (568)
T 2vsy_A 79 LLQQASDA--APEHPGIALWL-------------GHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDW 141 (568)
T ss_dssp HHHHHHHH--CTTCHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhc--CCCCHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhcc
Confidence 99998874 45542111110 012345789999999998888764 4 677888899999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 048743 513 KMIGDALKIYRRMQEMK 529 (653)
Q Consensus 513 g~~~~a~~~~~~m~~~g 529 (653)
|+.++|.+.+++..+.+
T Consensus 142 g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 142 RALDVLSAQVRAAVAQG 158 (568)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhcC
Confidence 99999999999988764
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.27 E-value=0.00052 Score=65.67 Aligned_cols=227 Identities=12% Similarity=0.024 Sum_probs=166.7
Q ss_pred HHHhcCC-hHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----
Q 048743 353 GYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG--FLEAAHDILDDMELAGHPMDSTTYKSLLTAY---- 425 (653)
Q Consensus 353 ~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---- 425 (653)
+..+.|. .++|+.+++.+...+ |.+.++|+.--..+...| ++++++..++.+...+. -+..+|+.--..+
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHH
Confidence 3344444 578999999999988 888888999888888888 99999999999988643 3566676655555
Q ss_pred HHc---CChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHH--HHHHHHHHHHHccCCCCHH
Q 048743 426 YKV---KMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSD--LAESLIQEMREEAALSTIY 500 (653)
Q Consensus 426 ~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~ 500 (653)
.+. +++++++.+++.+.+. .|..+..-.....+.. +.|..+ ++.+.++++.+.+. -|..
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~-------------~l~~~~~~~EL~~~~~~i~~d~-~N~s 181 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVD-------------TFDLHNDAKELSFVDKVIDTDL-KNNS 181 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH-------------HTTCTTCHHHHHHHHHHHHHCT-TCHH
T ss_pred HhccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-------------HhcccChHHHHHHHHHHHHhCC-CCHH
Confidence 555 7899999999999874 4554222111111111 245566 89999999998763 2788
Q ss_pred HHHHHHHHHHcCCC------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHHhhhCCCccCH
Q 048743 501 KLNSSIYFFCKGKM------IGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRD-ITILWGDIKRNIESGVLAVSR 573 (653)
Q Consensus 501 ~y~~li~~~~~~g~------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~p~~ 573 (653)
.|+.--..+.+.|. ++++++.+++++..... |...|+.+-..+.+.|+... +..+...+... .. .-..+.
T Consensus 182 AW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~-~~-~~~~s~ 258 (306)
T 3dra_A 182 AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDL-EK-DQVTSS 258 (306)
T ss_dssp HHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG-GG-TEESCH
T ss_pred HHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhc-cC-CCCCCH
Confidence 88887777777776 89999999999986433 77788888888888887444 44555444311 00 124477
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 048743 574 DLYETLLLNFLQGGYFERVMEVIGYMKK 601 (653)
Q Consensus 574 ~~y~~li~~~~~~g~~~~a~~~~~~m~~ 601 (653)
..+..+.+.|.+.|+.++|.++++.+.+
T Consensus 259 ~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 259 FALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 8899999999999999999999999975
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.27 E-value=3.1e-05 Score=70.41 Aligned_cols=130 Identities=11% Similarity=-0.072 Sum_probs=110.8
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHH
Q 048743 253 YESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQEL 332 (653)
Q Consensus 253 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (653)
+..+...+...|++++|...|++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-------------------------------------------------------- 32 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-------------------------------------------------------- 32 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS--------------------------------------------------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH--------------------------------------------------------
Confidence 556677788899999999999887
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 048743 333 VLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHP 412 (653)
Q Consensus 333 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 412 (653)
+.|+...|..+...+.+.|++++|...|++..... +.+...|..+...|...|++++|...|++..+....
T Consensus 33 -------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 33 -------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103 (213)
T ss_dssp -------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred -------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence 34677789999999999999999999999998887 777788999999999999999999999999875321
Q ss_pred --------------C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC
Q 048743 413 --------------M-DSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQN 449 (653)
Q Consensus 413 --------------p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 449 (653)
| ....+..+..+|.+.|++++|...|+...+. .|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~ 153 (213)
T 1hh8_A 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSE 153 (213)
T ss_dssp CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCS
T ss_pred ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Ccc
Confidence 1 2267888999999999999999999999874 454
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.26 E-value=3.2e-05 Score=70.09 Aligned_cols=128 Identities=11% Similarity=0.026 Sum_probs=85.0
Q ss_pred cccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCCH--
Q 048743 475 SLMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRP-TVETFYYLVYGHSSLEMY-- 550 (653)
Q Consensus 475 ~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~-- 550 (653)
...|++++|...|++..+.. | +...|..+...|...|++++|++.|++..+. .| +..++..+...+...|..
T Consensus 65 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHH
Confidence 34677777777777776654 5 6778888999999999999999999998885 34 466777777777655533
Q ss_pred HHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 048743 551 RDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSE 614 (653)
Q Consensus 551 ~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 614 (653)
..+...+..+. ...|....+...-.++...|++++|...|++.. .+.|+......+
T Consensus 141 ~~~~~~~~~~~------~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al--~l~P~~~~~~~l 196 (208)
T 3urz_A 141 KKLETDYKKLS------SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI--LRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHC---------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TTSCCHHHHHHH
T ss_pred HHHHHHHHHHh------CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCHHHHHHH
Confidence 33444443321 222222233334455667899999999999888 456876554443
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.25 E-value=1.3e-05 Score=68.32 Aligned_cols=100 Identities=5% Similarity=-0.140 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAY 425 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (653)
.+..+-..|.+.|++++|++.|++..+.. |.+..+|..+...|.+.|++++|...|++..+... -+..+|..+...|
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~ 109 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP-TQKDLVLKIAELL 109 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 45567788889999999999999998887 78888899999999999999999999999887532 2677888888899
Q ss_pred HHcCChHHHHHH-HHHHHHcCCccCc
Q 048743 426 YKVKMFREAEAL-LKQMRKSCLVQNL 450 (653)
Q Consensus 426 ~~~~~~~~a~~~-~~~m~~~~~~p~~ 450 (653)
.+.|++++|... ++...+ +.|+.
T Consensus 110 ~~~~~~~~aa~~~~~~al~--l~P~~ 133 (150)
T 4ga2_A 110 CKNDVTDGRAKYWVERAAK--LFPGS 133 (150)
T ss_dssp HHHCSSSSHHHHHHHHHHH--HSTTC
T ss_pred HHcCChHHHHHHHHHHHHH--hCcCC
Confidence 999988776554 576665 34653
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.24 E-value=6.5e-06 Score=70.26 Aligned_cols=87 Identities=7% Similarity=-0.118 Sum_probs=57.9
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 048743 354 YKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFRE 433 (653)
Q Consensus 354 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 433 (653)
+...|++++|+..++...... |.+...+-.+-..|.+.|++++|.+.|++..+.. +-+..+|..+-.+|.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 344566777777777665544 4444456667777777777777777777776643 2256677777777777777777
Q ss_pred HHHHHHHHHH
Q 048743 434 AEALLKQMRK 443 (653)
Q Consensus 434 a~~~~~~m~~ 443 (653)
|...|+...+
T Consensus 84 A~~~~~~al~ 93 (150)
T 4ga2_A 84 AVECYRRSVE 93 (150)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.23 E-value=8.1e-05 Score=67.64 Aligned_cols=177 Identities=10% Similarity=-0.008 Sum_probs=106.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccc--
Q 048743 399 AHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSL-- 476 (653)
Q Consensus 399 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~-- 476 (653)
|.+.|++..+.| ++..+..|-..|...+++++|...|++..+.|. |...+.+-. .|..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~-~~a~~~lg~----------------~y~~~g 64 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGD-GDALALLAQ----------------LKIRNP 64 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-HHHHHHHHH----------------HTTSST
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHH----------------HHHcCC
Confidence 455555555543 555566666666666666666666666655442 111111100 0112
Q ss_pred -cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHhc----
Q 048743 477 -MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK----GKMIGDALKIYRRMQEMKIR-PTVETFYYLVYGHSS---- 546 (653)
Q Consensus 477 -~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~---- 546 (653)
..+.++|...|++..+.| +...+..|-..|.. .+++++|+++|++..+.|.. -+...+..|-..|..
T Consensus 65 ~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~ 141 (212)
T 3rjv_A 65 QQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHG 141 (212)
T ss_dssp TSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSS
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC
Confidence 116677777777666654 45566666666666 77888888888887765432 015566666667766
Q ss_pred cCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhC-C-----CHHHHHHHHHHHHhCCC
Q 048743 547 LEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG-G-----YFERVMEVIGYMKKQNM 604 (653)
Q Consensus 547 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~ 604 (653)
.+++++|..+|+...+ ...+...+..|-..|... | +.++|...|+...+.|.
T Consensus 142 ~~d~~~A~~~~~~A~~------~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSS------LSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp SCCHHHHHHHHHHHHH------TSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6788888888876641 122344556666666543 3 78888888888877774
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.21 E-value=0.00011 Score=70.62 Aligned_cols=189 Identities=8% Similarity=-0.066 Sum_probs=129.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES------TLCSDVIDALIQLGFLEAAHDILDDMELAG---HPMD-- 414 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~-- 414 (653)
.+...+..+...|++++|.+.+.+..... +... ..+..+...+...|++++|...+.+..+.. ..+.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 45567888899999999999999877655 2221 113445566777899999999999987532 1222
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHc
Q 048743 415 STTYKSLLTAYYKVKMFREAEALLKQMRKS-CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE 493 (653)
Q Consensus 415 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 493 (653)
..+|+.+...|...|++++|...|++..+. ...|+...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~----------------------------------------- 193 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE----------------------------------------- 193 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH-----------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc-----------------------------------------
Confidence 458889999999999999999999988742 11222100
Q ss_pred cCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHhccCCHHHH-HHHHHHHHHHhhhC
Q 048743 494 AALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM----KIRPT-VETFYYLVYGHSSLEMYRDI-TILWGDIKRNIESG 567 (653)
Q Consensus 494 ~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~~~~~~a-~~~~~~~~~~~~~~ 567 (653)
....+|+.+...|...|++++|++.+++..+. +..+. ..+|..+...+.+.|+.++| ...++......+..
T Consensus 194 ---~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 194 ---FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ---chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 01246778888888999999999999887652 11111 56778888889999999999 77777765444444
Q ss_pred CCccCHHHHHHHH
Q 048743 568 VLAVSRDLYETLL 580 (653)
Q Consensus 568 ~~~p~~~~y~~li 580 (653)
+-..-...|..+|
T Consensus 271 ~~~~~~~~~~~~~ 283 (293)
T 2qfc_A 271 EMHAYKEALVNKI 283 (293)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CcHhhHHHHHHHH
Confidence 4333333333333
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.19 E-value=0.00038 Score=66.63 Aligned_cols=223 Identities=10% Similarity=-0.014 Sum_probs=133.6
Q ss_pred HhcCChhhHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcC--ChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhh----
Q 048743 188 VRFGSSLKGQHIMELMSQTGVVADAHS-IIILAQIHEMNC--QRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLH---- 260 (653)
Q Consensus 188 ~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~---- 260 (653)
.+....++|+++++.+... .|+..| |+.--.++...| +++++.++++.+....+.... +|+.--..+
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~----aW~~R~~iL~~~~ 117 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ----IWNYRQLIIGQIM 117 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH----HHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH----HHHHHHHHHHHHH
Confidence 3344457999999999975 688877 676666666667 888888888877765443322 344333333
Q ss_pred hcc---CCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhc
Q 048743 261 FKF---DDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRN 337 (653)
Q Consensus 261 ~~~---g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (653)
... +++++++.+++++.+
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~----------------------------------------------------------- 138 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLS----------------------------------------------------------- 138 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHH-----------------------------------------------------------
T ss_pred HhccccCCHHHHHHHHHHHHH-----------------------------------------------------------
Confidence 333 566777777766621
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCChH--HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCC------HHHHHHHHHHHHH
Q 048743 338 GKLLH-SNRAMAKLINGYKKHGKNS--ELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF------LEAAHDILDDMEL 408 (653)
Q Consensus 338 ~~~~p-~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~ 408 (653)
..| +..+|+.-.-.+.+.|.++ ++++.++++.+.+ +.|.+.|+.-...+.+.+. ++++++.++.+..
T Consensus 139 --~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~ 214 (306)
T 3dra_A 139 --SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV 214 (306)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred --hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH
Confidence 112 4445655555555566666 7777777777666 6666666655555555554 6666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHH
Q 048743 409 AGHPMDSTTYKSLLTAYYKVKMFRE-AEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLI 487 (653)
Q Consensus 409 ~g~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~ 487 (653)
... -|...|+.+-..+.+.|+... +..+..++.+.+
T Consensus 215 ~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 251 (306)
T 3dra_A 215 KCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE------------------------------------------ 251 (306)
T ss_dssp HCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG------------------------------------------
T ss_pred hCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc------------------------------------------
Confidence 432 256666666656655554222 222333222211
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 048743 488 QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE 527 (653)
Q Consensus 488 ~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 527 (653)
+. -..+...+..+.+.|.+.|+.++|+++++.+.+
T Consensus 252 ----~~-~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 252 ----KD-QVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp ----GT-EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 00 012566677777777778888888888888765
No 117
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.19 E-value=5.1e-05 Score=68.23 Aligned_cols=165 Identities=10% Similarity=-0.075 Sum_probs=89.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccc
Q 048743 391 IQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASF 470 (653)
Q Consensus 391 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~ 470 (653)
...|++++|.++++.+.. .......++..+-..+...|++++|...+++..+.....+...
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------ 63 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT------------------ 63 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHH------------------
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcH------------------
Confidence 345777777774444432 1112455666777777777777777777776655211000000
Q ss_pred cccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc----CCCC--CHHHHHHHHHHH
Q 048743 471 TDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEM----KIRP--TVETFYYLVYGH 544 (653)
Q Consensus 471 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p--~~~t~~~li~~~ 544 (653)
....+++.+-..|...|++++|++.+++..+. +-.| ....+..+...+
T Consensus 64 --------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 117 (203)
T 3gw4_A 64 --------------------------AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVA 117 (203)
T ss_dssp --------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 02334555666666677777777776665542 1011 123455566666
Q ss_pred hccCCHHHHHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 545 SSLEMYRDITILWGDIKRNIESGVLAV-SRDLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 545 ~~~~~~~~a~~~~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
...|++++|...+++..+..+..+-.. -..++..+...+...|++++|.+.+++..
T Consensus 118 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 118 LHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 677777777777766654433322211 12334556666777777777777766554
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.17 E-value=0.00019 Score=68.95 Aligned_cols=175 Identities=11% Similarity=-0.007 Sum_probs=126.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHH
Q 048743 347 MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES----TLCSDVIDALIQLGFLEAAHDILDDMELAGHP-MD----STT 417 (653)
Q Consensus 347 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~ 417 (653)
+...+..+...|++++|..++++........++. ..+..+...+...|++++|...|++..+.... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3445778899999999999999988755222221 12334666677778999999999999874322 23 336
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCC-ccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCC
Q 048743 418 YKSLLTAYYKVKMFREAEALLKQMRKSCL-VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAAL 496 (653)
Q Consensus 418 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 496 (653)
|+.+...|...|++++|...|++..+.-- .|... .
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~-~------------------------------------------- 193 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE-E------------------------------------------- 193 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH-H-------------------------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch-h-------------------------------------------
Confidence 89999999999999999999999875210 00100 0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----cCCCCC-HHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhh
Q 048743 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQE----MKIRPT-VETFYYLVYGHSSLEM-YRDITILWGDIKRNIE 565 (653)
Q Consensus 497 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~li~~~~~~~~-~~~a~~~~~~~~~~~~ 565 (653)
....+|..+...|.+.|++++|++.+++..+ .+..+. ..+|..+..++.+.|+ .++|.+.++......+
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 0234678888899999999999999988775 233333 5678888888999994 6999999988765443
No 119
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.17 E-value=3.4e-05 Score=82.16 Aligned_cols=152 Identities=8% Similarity=-0.049 Sum_probs=108.6
Q ss_pred cCChhhHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHH
Q 048743 190 FGSSLKGQHIMELMSQTGVVAD-AHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDA 268 (653)
Q Consensus 190 ~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 268 (653)
.|++++|.+.|++..+. .|+ ...+..+...+.+.|++++|.+.++...+..+.. ...+..+..+|...|++++
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH----PEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC----HHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHH
Confidence 47889999999988765 454 5567888888999999999999999888764332 3468888889999999999
Q ss_pred HHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCC-CHHHH
Q 048743 269 AGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLH-SNRAM 347 (653)
Q Consensus 269 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~ 347 (653)
|.+.|++..+ ..| +...+
T Consensus 76 A~~~~~~al~-------------------------------------------------------------~~p~~~~~~ 94 (568)
T 2vsy_A 76 AAVLLQQASD-------------------------------------------------------------AAPEHPGIA 94 (568)
T ss_dssp HHHHHHHHHH-------------------------------------------------------------HCTTCHHHH
T ss_pred HHHHHHHHHh-------------------------------------------------------------cCCCCHHHH
Confidence 9999988732 223 46688
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHc---CCHHHHHHHHHHHHHCC
Q 048743 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL---GFLEAAHDILDDMELAG 410 (653)
Q Consensus 348 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g 410 (653)
..+-.++.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 95 LWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 888889999999999999999988877 67777788899999998 99999999999987764
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.15 E-value=0.00018 Score=65.27 Aligned_cols=176 Identities=10% Similarity=-0.064 Sum_probs=127.7
Q ss_pred hHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccC----CHHHHH
Q 048743 195 KGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFD----DIDAAG 270 (653)
Q Consensus 195 ~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~ 270 (653)
+|++.|+...+.| +...+..+-..+...++.++|.+.++...+.+.+ ..+..|-..|.. + +.++|.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~------~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDG------DALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCH------HHHHHHHHHTTS-STTSCCHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHc-CCCCCCHHHHH
Confidence 4566677766654 5556666677777778888888888877765433 246667777777 6 899999
Q ss_pred HHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHH
Q 048743 271 ELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKL 350 (653)
Q Consensus 271 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 350 (653)
+.|++..+ . -+...+..|
T Consensus 74 ~~~~~A~~-----------------------------------------------------------~---g~~~a~~~L 91 (212)
T 3rjv_A 74 QLAEKAVE-----------------------------------------------------------A---GSKSGEIVL 91 (212)
T ss_dssp HHHHHHHH-----------------------------------------------------------T---TCHHHHHHH
T ss_pred HHHHHHHH-----------------------------------------------------------C---CCHHHHHHH
Confidence 99988721 1 134455666
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhcCCCCC--CcccHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048743 351 INGYKK----HGKNSELSWLLLSIKKEHHSFG--ESTLCSDVIDALIQ----LGFLEAAHDILDDMELAGHPMDSTTYKS 420 (653)
Q Consensus 351 i~~~~~----~~~~~~a~~~~~~m~~~~~~~~--~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 420 (653)
-..|.. .+++++|...|++..+.+ +. +...+..|-..|.. .+++++|...|++..+. ..+...+..
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 666766 789999999999988877 32 24558888888888 78999999999999876 234556777
Q ss_pred HHHHHHHc-C-----ChHHHHHHHHHHHHcCC
Q 048743 421 LLTAYYKV-K-----MFREAEALLKQMRKSCL 446 (653)
Q Consensus 421 li~~~~~~-~-----~~~~a~~~~~~m~~~~~ 446 (653)
|-..|... | ++++|...|+...+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77777654 3 89999999999888764
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.08 E-value=0.00018 Score=65.17 Aligned_cols=125 Identities=10% Similarity=0.002 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHH
Q 048743 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSE 462 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~ 462 (653)
+..+...+...|++++|...|++.. .|+...|..+...|.+.|++++|...|+...+. .|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~------------- 69 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKH------------- 69 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Ccc-------------
Confidence 3444555566666666666666542 446666666666666677777776666666553 222
Q ss_pred HhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-------------
Q 048743 463 VADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK------------- 529 (653)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g------------- 529 (653)
+...|..+...|...|++++|++.|++..+..
T Consensus 70 -----------------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 114 (213)
T 1hh8_A 70 -----------------------------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114 (213)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred -----------------------------------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcc
Confidence 34456666666777777777777777766532
Q ss_pred -CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 530 -IRPT-VETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 530 -~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
..|+ ...+..+..++...|++++|...|+...
T Consensus 115 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 1111 2566677777888888888888887765
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.07 E-value=4.8e-05 Score=64.59 Aligned_cols=105 Identities=10% Similarity=0.013 Sum_probs=91.8
Q ss_pred CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048743 340 LLHSN-RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTY 418 (653)
Q Consensus 340 ~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 418 (653)
+.|+. ..+..+-..+.+.|++++|...|++..... |.+...|..+-.+|.+.|++++|...|++..+... -++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHH
Confidence 44544 467788889999999999999999999988 88888899999999999999999999999987642 367888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCccC
Q 048743 419 KSLLTAYYKVKMFREAEALLKQMRKSCLVQN 449 (653)
Q Consensus 419 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 449 (653)
..+-.+|.+.|++++|...|+...+. .|+
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l--~~~ 136 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQH--SND 136 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 99999999999999999999999884 455
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.07 E-value=0.00011 Score=63.43 Aligned_cols=97 Identities=10% Similarity=-0.049 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (653)
..+..+...+...|++++|...|++..... +.+..+|..+...+...|++++|...+++..+.. +.+...|..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 456777888889999999999999988877 6677778889999999999999999999987753 3467788888889
Q ss_pred HHHcCChHHHHHHHHHHHHc
Q 048743 425 YYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 425 ~~~~~~~~~a~~~~~~m~~~ 444 (653)
+...|++++|...|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh
Confidence 99999999999999888774
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.03 E-value=9.7e-05 Score=60.60 Aligned_cols=106 Identities=13% Similarity=0.014 Sum_probs=92.7
Q ss_pred CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048743 340 LLHSN-RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTY 418 (653)
Q Consensus 340 ~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 418 (653)
+.|+. ..+...-..|.+.|++++|+..|++..+.. |.+..+|..+..+|.+.|++++|...|++..+.. +.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHH
Confidence 44544 467788899999999999999999999887 8888889999999999999999999999998753 3468899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 419 KSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 419 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
..+-.+|...|++++|...|++..+ +.|+.
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~--l~P~~ 114 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQ--VDPSN 114 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--HCcCC
Confidence 9999999999999999999999987 45764
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.03 E-value=0.014 Score=60.19 Aligned_cols=358 Identities=9% Similarity=-0.028 Sum_probs=197.9
Q ss_pred CChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC-hhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhc----cCC
Q 048743 191 GSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQ-RDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFK----FDD 265 (653)
Q Consensus 191 g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 265 (653)
|+++.|.++|+.-... .|+...|..-+....+.++ .+.+.++|+.....-.++. ....+|...+..+.. .++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~-~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYW-DSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCT-TCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHhchhhhHH
Confidence 8899999999998874 5888888887777777663 4567777877765421111 122468887776543 467
Q ss_pred HHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHH
Q 048743 266 IDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNR 345 (653)
Q Consensus 266 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 345 (653)
++.+.++|++.... |.... . ..-..+. .++.. .+..
T Consensus 105 ~~~vR~iy~rAL~~----P~~~~-------------------~-------------~lw~~Y~-----~fE~~---~~~~ 140 (493)
T 2uy1_A 105 IEKIRNGYMRALQT----PMGSL-------------------S-------------ELWKDFE-----NFELE---LNKI 140 (493)
T ss_dssp HHHHHHHHHHHHTS----CCTTH-------------------H-------------HHHHHHH-----HHHHH---HCHH
T ss_pred HHHHHHHHHHHHhC----hhhhH-------------------H-------------HHHHHHH-----HHHHH---hccc
Confidence 88899999988431 10000 0 0000000 00000 0111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG-------FLEAAHDILDDMELAGHPMDSTTY 418 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~ 418 (653)
+...++.... +.+..|..+++++...- ...+...|...+..-...+ ..+.+..+|++.... ++-+...|
T Consensus 141 ~~~~~~~~~~--~~y~~ar~~y~~~~~~~-~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW 216 (493)
T 2uy1_A 141 TGKKIVGDTL--PIFQSSFQRYQQIQPLI-RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVY 216 (493)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHH-HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHH
T ss_pred cHHHHHHHHh--HHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHH
Confidence 1111121111 22333444444433211 0011223544444322111 134567788888764 34467778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCccCch-hhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHc----
Q 048743 419 KSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS-CEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE---- 493 (653)
Q Consensus 419 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~---- 493 (653)
...+.-+.+.|+++.|..+|++.... |... ..+.. .... ..++. ++.+.+.
T Consensus 217 ~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y----~~~~--------------e~~~~---~~~l~~~~~~~ 272 (493)
T 2uy1_A 217 FFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYY----GLVM--------------DEEAV---YGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHH----HHHT--------------TCTHH---HHHHHHHTC--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHH----Hhhc--------------chhHH---HHHHHHHHHhh
Confidence 87787788888999999999988876 5541 11110 0000 00011 1111110
Q ss_pred -----cCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHh
Q 048743 494 -----AALS---TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS-LEMYRDITILWGDIKRNI 564 (653)
Q Consensus 494 -----~~~p---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-~~~~~~a~~~~~~~~~~~ 564 (653)
+..+ ....|-..+..+.+.+..+.|..+|++. .. ..++...|......-.. .++.+.|..+|+...+.
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~- 349 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK- 349 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-
Confidence 0001 2356777788777788899999999988 32 12234444322222122 33699999999988743
Q ss_pred hhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHH--HHhhhhhHHhhhhhHHHHHH
Q 048743 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEF--LKHHKHLYRRLKVSNARTEA 635 (653)
Q Consensus 565 ~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~--~~~~~~~~~~~~~~~~~~~~ 635 (653)
.+ -+...+...++-....|+.+.|..+|+... .....|...+ ...+|+.+.+..+.+...+.
T Consensus 350 --~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 350 --HP--DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp --CT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred --CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 22 234456667777788999999999999873 2455566555 45668887777766666653
No 126
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=0.00053 Score=70.00 Aligned_cols=173 Identities=9% Similarity=-0.021 Sum_probs=111.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-CccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHH----
Q 048743 418 YKSLLTAYYKVKMFREAEALLKQMRKSC-LVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE---- 492 (653)
Q Consensus 418 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~---- 492 (653)
+..+...|...|++++|.+.+....+.- -.++..........+.. .+...|+.+.|..++.....
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~a~~~~~~~~~~~~~ 127 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEK----------FEQVPDSLDDQIFVCEKSIEFAKR 127 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHH----------HCSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH----------HHhCCCCHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777665421 11111111111111111 13346778888888766553
Q ss_pred ccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CC--CCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhh
Q 048743 493 EAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEM--KI--RPT-VETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566 (653)
Q Consensus 493 ~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~--~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 566 (653)
.+..+ -..++..+...|...|++++|..++++.... +. .|. ...|..+++.|...|++++|..+++........
T Consensus 128 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 128 EKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 22222 3457788999999999999999999987752 21 222 357888889999999999999999887654333
Q ss_pred CCCccC--HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 567 GVLAVS--RDLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 567 ~~~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
....+. ...+..+...+...|++++|...|.+..
T Consensus 208 ~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 208 IYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 332222 3456667777888999999988876664
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.00 E-value=0.00013 Score=65.42 Aligned_cols=167 Identities=6% Similarity=-0.093 Sum_probs=111.4
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHc
Q 048743 354 YKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL----AGHPM-DSTTYKSLLTAYYKV 428 (653)
Q Consensus 354 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~ 428 (653)
....|++++|.++++.+.... .....++..+...+...|++++|...+++..+ .+..| ...++..+-..+...
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp -----CHHHHHHHHHHHHTST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 346899999999665554422 34556688999999999999999999998765 22222 345677888889999
Q ss_pred CChHHHHHHHHHHHHcCC-ccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 048743 429 KMFREAEALLKQMRKSCL-VQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIY 507 (653)
Q Consensus 429 ~~~~~a~~~~~~m~~~~~-~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~ 507 (653)
|++++|...+++..+..- .++... .....+..+..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~--------------------------------------------~~~~~~~~lg~ 115 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPL--------------------------------------------AASANAYEVAT 115 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHH--------------------------------------------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHH--------------------------------------------HHHHHHHHHHH
Confidence 999999999988765310 111100 01234666777
Q ss_pred HHHcCCCHHHHHHHHHHHHhcC---CCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhh
Q 048743 508 FFCKGKMIGDALKIYRRMQEMK---IRPT--VETFYYLVYGHSSLEMYRDITILWGDIKRNIES 566 (653)
Q Consensus 508 ~~~~~g~~~~a~~~~~~m~~~g---~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 566 (653)
.+...|++++|...+++..... -.|. ..++..+...+...|++++|...+++..+..+.
T Consensus 116 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 116 VALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 7788888888888888776421 1111 234567777888889999998888777654333
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.00 E-value=0.00015 Score=58.85 Aligned_cols=96 Identities=19% Similarity=0.166 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (653)
..|..+...+...|++++|.+.++++.... +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 345555666666666666666666666554 4445556666666666666666666666665542 2345566666666
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 048743 425 YYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 425 ~~~~~~~~~a~~~~~~m~~ 443 (653)
+...|++++|...|+++.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 6666666666666666655
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.98 E-value=0.00017 Score=62.12 Aligned_cols=130 Identities=12% Similarity=-0.086 Sum_probs=104.7
Q ss_pred HHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhH
Q 048743 251 QFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQ 330 (653)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (653)
..+..+...+...|++++|...|++..+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------------------------------------------------- 42 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--------------------------------------------------- 42 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------------------------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------------------------------------------
Confidence 35777888889999999999999988320
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048743 331 ELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG 410 (653)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 410 (653)
.+.+...+..+...+...|++++|...+++..... +.+...|..+...+.+.|++++|...|++..+..
T Consensus 43 ---------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 43 ---------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp ---------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ---------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 11245678888899999999999999999998887 7777789999999999999999999999998753
Q ss_pred CCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHH
Q 048743 411 HPMDSTTYKS--LLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 411 ~~p~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
. .+...+.. +...+.+.|++++|...+.....
T Consensus 112 p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 112 P-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 2 24555533 44447788999999999887654
No 130
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.96 E-value=0.0039 Score=64.45 Aligned_cols=341 Identities=11% Similarity=0.015 Sum_probs=178.3
Q ss_pred hHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccC-CchhHHHH
Q 048743 18 SREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKA-DLLQLDLL 96 (653)
Q Consensus 18 ~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~t~ 96 (653)
.+.+|.+.+..+-. |+.+.+.++|+..... .|+...|...+.-..+.+.. .+....+|+.....-| ...+...|
T Consensus 14 aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~--~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 14 PSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQK--KFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC------CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCch--HHHHHHHHHHHHHHcCCCcccHHHH
Confidence 34567777766654 8899999999998873 57777887777776665532 3455666766554433 22356777
Q ss_pred HHHHHHHH----hcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhccccccc-------------------------
Q 048743 97 AKLSLSLA----RAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCL------------------------- 147 (653)
Q Consensus 97 ~~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~------------------------- 147 (653)
...+..+. ..|+.+.+..+|++........-...|......- .. .+...
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~-~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~ 166 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LE-LNKITGKKIVGDTLPIFQSSFQRYQQIQPL 166 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HH-HCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HH-hccccHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 77776554 2456778889999988732111111222111100 00 00000
Q ss_pred -------chHHHHHHHHHhh-------hhhhhhcCCccCC---CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc
Q 048743 148 -------ASNFLIQLCDVFL-------HLSAEKSNGAELI---KPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVA 210 (653)
Q Consensus 148 -------~~~~l~~~~~~~~-------~~~~a~~~~~~~~---~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p 210 (653)
.+...++.....+ ..+.+..+|++.+ +-+...|-..+.-+.+.|+++.|.++|++.... |
T Consensus 167 ~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P 243 (493)
T 2uy1_A 167 IRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---S 243 (493)
T ss_dssp HHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred HhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---C
Confidence 0000000000000 0000111222111 122334444445555566666666666666654 4
Q ss_pred cHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCC---------CcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCC
Q 048743 211 DAHSIIILAQIHEMNCQRDELKKFKCYIDQLST---------PFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYRE 281 (653)
Q Consensus 211 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 281 (653)
+....-. .++...+.++ +++.+.+... ........+|-..+....+.++++.|..+|++. +
T Consensus 244 ~~~~l~~---~y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~--- 313 (493)
T 2uy1_A 244 DGMFLSL---YYGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G--- 313 (493)
T ss_dssp CSSHHHH---HHHHHTTCTH---HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T---
T ss_pred CcHHHHH---HHHhhcchhH---HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h---
Confidence 3332111 1111111111 1111111100 000111234555555555556666666666655 1
Q ss_pred CCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHH--HHHHHHHhcCC
Q 048743 282 PLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMA--KLINGYKKHGK 359 (653)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~li~~~~~~~~ 359 (653)
..+ .+...|. +.+.... .++
T Consensus 314 -------------------------------------------------------~~~--~~~~v~i~~A~lE~~~-~~d 335 (493)
T 2uy1_A 314 -------------------------------------------------------NEG--VGPHVFIYCAFIEYYA-TGS 335 (493)
T ss_dssp -------------------------------------------------------TSC--CCHHHHHHHHHHHHHH-HCC
T ss_pred -------------------------------------------------------CCC--CChHHHHHHHHHHHHH-CCC
Confidence 011 1233332 3333322 346
Q ss_pred hHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 048743 360 NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLK 439 (653)
Q Consensus 360 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 439 (653)
.+.|..+|+...+.. +.+...|...++...+.|+.+.|..+|++.. .....|...+.--...|+.+.+..+++
T Consensus 336 ~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 336 RATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999988765 4444556777888888999999999999873 257778888877778899999999888
Q ss_pred HHHH
Q 048743 440 QMRK 443 (653)
Q Consensus 440 ~m~~ 443 (653)
+..+
T Consensus 409 ~~~~ 412 (493)
T 2uy1_A 409 QKMD 412 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.94 E-value=0.00017 Score=58.38 Aligned_cols=80 Identities=16% Similarity=0.087 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (653)
+..++..+...+.+.|++++|...++++.... +.+..++..+...+...|++++|...|+++.+.. +.+...+..+.
T Consensus 42 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 118 (125)
T 1na0_A 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 118 (125)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45566666677777777777777777766655 5555556677777777777777777777766542 12344444444
Q ss_pred HHH
Q 048743 423 TAY 425 (653)
Q Consensus 423 ~~~ 425 (653)
..+
T Consensus 119 ~~~ 121 (125)
T 1na0_A 119 NAK 121 (125)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.94 E-value=0.0047 Score=59.76 Aligned_cols=241 Identities=10% Similarity=-0.032 Sum_probs=162.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048743 347 MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG-FLEAAHDILDDMELAGHPMDSTTYKSLLTAY 425 (653)
Q Consensus 347 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (653)
++.+-....+.+..++|+++++++...+ |.+.++|+.--..+...| ++++++.+++.+..... -+..+|+.--..+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 3344444445556678999999999998 888888999888888888 59999999999998654 4788898888777
Q ss_pred HHc-C-ChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHH
Q 048743 426 YKV-K-MFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLN 503 (653)
Q Consensus 426 ~~~-~-~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~ 503 (653)
.+. + ++++++.+++.+.+ ..|..+..-.....+......... .....+.++.+.++++.+... -|...|+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~-----~~~~~~~eELe~~~k~I~~dp-~N~SAW~ 205 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGR-----ISEAQWGSELDWCNEMLRVDG-RNNSAWG 205 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTC-----CCHHHHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccc-----cchhhHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 777 7 89999999999976 345542221111111111110000 001123488888999888762 2888898
Q ss_pred HHHHHHHcCCC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCH--------------------HHHHHH
Q 048743 504 SSIYFFCKGKM-------IGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMY--------------------RDITIL 556 (653)
Q Consensus 504 ~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~--------------------~~a~~~ 556 (653)
-.-..+.+.++ ++++++.+++++.... -|...|+.+-..+.+.|+. ......
T Consensus 206 ~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (349)
T 3q7a_A 206 WRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAF 284 (349)
T ss_dssp HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------------
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHH
Confidence 88888888776 7899999999887532 2566676655556555543 122222
Q ss_pred HHHHHHHhhhC----CCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 048743 557 WGDIKRNIESG----VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 557 ~~~~~~~~~~~----~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 602 (653)
...+. ... .-.++......+++.|...|+.++|.++++.+.+.
T Consensus 285 ~~~~~---~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 285 GFPMP---SDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp -CCCC---C-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHH---hcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 21121 111 11467888899999999999999999999998643
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.92 E-value=0.00016 Score=68.90 Aligned_cols=190 Identities=9% Similarity=-0.070 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (653)
+...+..+-..+.+.|++++|...|++..... |.+...|..+...|.+.|++++|...+++..+.. +-+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 44567788889999999999999999999887 7788889999999999999999999999998753 34678899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCc---hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCH
Q 048743 423 TAYYKVKMFREAEALLKQMRKSCLVQNL---SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499 (653)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 499 (653)
.+|...|++++|...|+...+. .|+. ....+.. .+ ....+ ..+.........++.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~-~~------------------~~~~~-~~~~~~~~~~~~~~~ 137 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPS-AL------------------RIAKK-KRWNSIEERRIHQES 137 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHH-HH------------------HHHHH-HHHHHHHHTCCCCCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHH-HH------------------HHHHH-HHHHHHHHHHHhhhH
Confidence 9999999999999999998763 3432 1111111 00 00111 112223333333344
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH-HHhcc-CCHHHHHHHHHHHH
Q 048743 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVY-GHSSL-EMYRDITILWGDIK 561 (653)
Q Consensus 500 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~-~~~~~-~~~~~a~~~~~~~~ 561 (653)
.....+-. + ..|+.++|++.+++..+. .|+......-+. .+.+. +.+++|.++|..+.
T Consensus 138 ~i~~~l~~-l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 138 ELHSYLTR-L-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HHHHHHHH-H-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHH-H-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44433322 2 368889998888876653 566543333333 33333 56778888887654
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.90 E-value=0.00027 Score=58.09 Aligned_cols=101 Identities=12% Similarity=0.002 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048743 341 LHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKS 420 (653)
Q Consensus 341 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 420 (653)
..+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 3455688899999999999999999999998876 6677778999999999999999999999988753 346788889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 048743 421 LLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 421 li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
+..++.+.|++++|...|++..+.
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999998774
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.89 E-value=0.00029 Score=57.62 Aligned_cols=99 Identities=14% Similarity=0.010 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (653)
+...+..+...+...|++++|...|++..... +.+...|..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 34567788888899999999999999988876 6677778889999999999999999999987753 33577888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHc
Q 048743 423 TAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
..+...|++++|...|++..+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 8999999999999999888774
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.89 E-value=0.00024 Score=58.10 Aligned_cols=119 Identities=13% Similarity=-0.050 Sum_probs=97.8
Q ss_pred hHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhh
Q 048743 250 QQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGK 329 (653)
Q Consensus 250 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (653)
...+..+...+...|++++|...|++....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------------------------------------------------- 41 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL-------------------------------------------------- 41 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------------
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------------------------------------------------
Confidence 446788888889999999999999988320
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048743 330 QELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409 (653)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 409 (653)
.+.+...+..+...+...|++++|...+++..... +.+...+..+...+.+.|++++|...|++..+.
T Consensus 42 ----------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 42 ----------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp ----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 11245678888999999999999999999998876 677777999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCh
Q 048743 410 GHPMDSTTYKSLLTAYYKVKMF 431 (653)
Q Consensus 410 g~~p~~~~~~~li~~~~~~~~~ 431 (653)
. +.+...+..+..++.+.|++
T Consensus 110 ~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 110 D-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp S-TTCHHHHHHHHHHHHHHTTC
T ss_pred C-ccchHHHHHHHHHHHHHhcC
Confidence 3 23677788888888877764
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.88 E-value=0.00011 Score=64.34 Aligned_cols=121 Identities=10% Similarity=0.035 Sum_probs=83.0
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCh--
Q 048743 355 KKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA-YYKVKMF-- 431 (653)
Q Consensus 355 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~-- 431 (653)
...|++++|...+++..... |.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 34677788888888777766 6666678888888888888888888888876643 2356666666666 6677776
Q ss_pred HHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc
Q 048743 432 REAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK 511 (653)
Q Consensus 432 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~ 511 (653)
++|...|+...+. .|+ +...|..+...|..
T Consensus 98 ~~A~~~~~~al~~--~p~------------------------------------------------~~~~~~~la~~~~~ 127 (177)
T 2e2e_A 98 AQTRAMIDKALAL--DSN------------------------------------------------EITALMLLASDAFM 127 (177)
T ss_dssp HHHHHHHHHHHHH--CTT------------------------------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCC------------------------------------------------cHHHHHHHHHHHHH
Confidence 7777777776653 233 34556667777788
Q ss_pred CCCHHHHHHHHHHHHhc
Q 048743 512 GKMIGDALKIYRRMQEM 528 (653)
Q Consensus 512 ~g~~~~a~~~~~~m~~~ 528 (653)
.|++++|...|++..+.
T Consensus 128 ~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 128 QANYAQAIELWQKVMDL 144 (177)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHhh
Confidence 88888888888887764
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.88 E-value=0.00024 Score=60.28 Aligned_cols=102 Identities=10% Similarity=-0.087 Sum_probs=85.3
Q ss_pred hHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhh
Q 048743 250 QQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGK 329 (653)
Q Consensus 250 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (653)
...+..+-..+.+.|++++|...|++...
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--------------------------------------------------- 64 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--------------------------------------------------- 64 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------------------------------
Confidence 34577778888899999999999998832
Q ss_pred HHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048743 330 QELVLFRNGKLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408 (653)
Q Consensus 330 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 408 (653)
..| +...|..+-.+|...|++++|+..|++..+.. |.+...|..+-.+|.+.|++++|...|++..+
T Consensus 65 ----------~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 65 ----------YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp ----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234 45678889999999999999999999999888 77888899999999999999999999999987
Q ss_pred CCCCCCHH
Q 048743 409 AGHPMDST 416 (653)
Q Consensus 409 ~g~~p~~~ 416 (653)
.. |+..
T Consensus 133 l~--~~~~ 138 (151)
T 3gyz_A 133 HS--NDEK 138 (151)
T ss_dssp HC--CCHH
T ss_pred hC--CCHH
Confidence 53 5543
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.87 E-value=0.00031 Score=57.75 Aligned_cols=120 Identities=8% Similarity=-0.154 Sum_probs=95.8
Q ss_pred ccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHh
Q 048743 246 AHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILK 325 (653)
Q Consensus 246 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (653)
...+...+..+...+.+.|++++|...|++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----------------------------------------------- 44 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIK----------------------------------------------- 44 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT-----------------------------------------------
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------------------------------
Confidence 344556788899999999999999999998832
Q ss_pred hhhhHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHH
Q 048743 326 MEGKQELVLFRNGKLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILD 404 (653)
Q Consensus 326 ~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 404 (653)
..| +...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...|+
T Consensus 45 --------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (133)
T 2lni_A 45 --------------RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKAAALEAMKDYTKAMDVYQ 108 (133)
T ss_dssp --------------TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 122 45678888899999999999999999998877 6777789999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcC
Q 048743 405 DMELAGHPMDSTTYKSLLTAYYKVK 429 (653)
Q Consensus 405 ~m~~~g~~p~~~~~~~li~~~~~~~ 429 (653)
+..+... -+...+..+..++...|
T Consensus 109 ~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 109 KALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHhCC-CchHHHHHHHHHHHHhc
Confidence 9877532 23455666666665544
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.85 E-value=0.00039 Score=65.03 Aligned_cols=191 Identities=10% Similarity=-0.144 Sum_probs=130.8
Q ss_pred hcCChhhHHHHHHHHHhcCCCccHHH-HHHH-------HHHHHhcCChhhhHHHHHHhhhcCCCcc--------------
Q 048743 189 RFGSSLKGQHIMELMSQTGVVADAHS-IIIL-------AQIHEMNCQRDELKKFKCYIDQLSTPFA-------------- 246 (653)
Q Consensus 189 ~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~l-------l~~~~~~g~~~~a~~~~~~~~~~~~~~~-------------- 246 (653)
..++...|.+.|.+..+. .|+..- |.-+ ...+.+.++..++...+..-....+...
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 589999999999999976 454433 5555 4455555555555444444333211000
Q ss_pred ---cchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHH
Q 048743 247 ---HHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSI 323 (653)
Q Consensus 247 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (653)
..-..++-.+...+...|++++|.++|+.+..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------------------------------------------- 130 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------------------------------------------- 130 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---------------------------------------------
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------------------------------------------
Confidence 00122345567778889999999999988821
Q ss_pred HhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CcccHHHHHHHHHHcCCHHHHHH
Q 048743 324 LKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG--ESTLCSDVIDALIQLGFLEAAHD 401 (653)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~ 401 (653)
..|+......+-..+.+.+++++|+..|+...... .+ ....+..+-.++.+.|++++|+.
T Consensus 131 ----------------~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~a~~~LG~al~~LG~~~eAl~ 192 (282)
T 4f3v_A 131 ----------------AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGVAAANLALFTEAER 192 (282)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHHHHHHHHHHHHHCCCHHHHHH
Confidence 22443344455568889999999999998554322 11 12247888899999999999999
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048743 402 ILDDMELAGHPMD--STTYKSLLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 402 ~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
.|++.......|. .......-.++.+.|+.++|..+|+++...
T Consensus 193 ~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 193 RLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999886443253 345666777899999999999999999885
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.85 E-value=0.00028 Score=61.80 Aligned_cols=122 Identities=7% Similarity=-0.006 Sum_probs=96.9
Q ss_pred ccccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HhccCCH-
Q 048743 474 SSLMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYG-HSSLEMY- 550 (653)
Q Consensus 474 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~~~~~~~- 550 (653)
+...|++++|...+++..+.. | +...|..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 456789999999999888765 4 77889999999999999999999999998753 2356677777888 7789998
Q ss_pred -HHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 048743 551 -RDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQN 603 (653)
Q Consensus 551 -~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 603 (653)
++|...++.+.+. -+.+...+..+...|...|++++|...+++..+..
T Consensus 97 ~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALAL-----DSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999988743 12356778888999999999999999999998653
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.85 E-value=0.0002 Score=70.32 Aligned_cols=145 Identities=12% Similarity=-0.076 Sum_probs=109.8
Q ss_pred hHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhh
Q 048743 250 QQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGK 329 (653)
Q Consensus 250 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (653)
...+..+-..|.+.|++++|...|++..+.....+.. . .+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------------~--------~~~~----------- 188 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------------------S--------NEEA----------- 188 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-------------------C--------SHHH-----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-------------------C--------hHHH-----------
Confidence 3468888889999999999999999884311100000 0 0000
Q ss_pred HHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048743 330 QELVLFRNGKLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408 (653)
Q Consensus 330 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 408 (653)
....| ....|..+-.+|.+.|++++|+..+++..+.. |.+...|..+..+|...|++++|...|++..+
T Consensus 189 --------~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 189 --------QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00000 13578889999999999999999999999987 78888899999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHH
Q 048743 409 AGHPMDSTTYKSLLTAYYKVKMFREA-EALLKQMRK 443 (653)
Q Consensus 409 ~g~~p~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~ 443 (653)
.. +-+...+..+..++.+.|++++| ..+|+.|..
T Consensus 259 l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 259 LY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 33678889999999999999988 456777764
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.80 E-value=0.00067 Score=58.48 Aligned_cols=103 Identities=14% Similarity=0.019 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (653)
+...|..+-..+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. +-+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 44577888899999999999999999999887 7788889999999999999999999999998764 33688999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 423 TAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
.+|...|++++|...|++..+. .|+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~--~p~~ 112 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA--EGNG 112 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--HSSS
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CCCc
Confidence 9999999999999999999874 4554
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.80 E-value=0.00026 Score=59.94 Aligned_cols=97 Identities=9% Similarity=-0.032 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (653)
..+..+-..+.+.|++++|...|++..... |.+...|..+..+|...|++++|...|++..... +.+...|..+-.+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 466778888999999999999999999887 8888889999999999999999999999998754 2367788889999
Q ss_pred HHHcCChHHHHHHHHHHHHc
Q 048743 425 YYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 425 ~~~~~~~~~a~~~~~~m~~~ 444 (653)
|...|++++|...|+...+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998873
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00036 Score=57.02 Aligned_cols=97 Identities=16% Similarity=0.009 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (653)
..|..+-..+.+.|++++|...|++..+.. |.+...|..+..+|.+.|++++|...|++..+.. +-+...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 456778888999999999999999999887 7788889999999999999999999999998764 3367889999999
Q ss_pred HHHcCChHHHHHHHHHHHHc
Q 048743 425 YYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 425 ~~~~~~~~~a~~~~~~m~~~ 444 (653)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999998874
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.78 E-value=0.00051 Score=56.91 Aligned_cols=100 Identities=11% Similarity=-0.098 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048743 342 HSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSL 421 (653)
Q Consensus 342 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 421 (653)
.+...|..+-..+...|++++|...|++..... |.+...|..+...+...|++++|...|++..+.. +.+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 466788899999999999999999999998887 7777889999999999999999999999998764 3368889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc
Q 048743 422 LTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 422 i~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
..+|...|++++|...|+...+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999998874
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.78 E-value=0.0003 Score=58.99 Aligned_cols=97 Identities=11% Similarity=-0.023 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (653)
..+..+-..+.+.|++++|...|++..... |.+...|..+..+|.+.|++++|...|++..+.. +-+...|..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 355667778889999999999999999888 8888889999999999999999999999998764 3366788889999
Q ss_pred HHHcCChHHHHHHHHHHHHc
Q 048743 425 YYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 425 ~~~~~~~~~a~~~~~~m~~~ 444 (653)
|...|++++|...|+...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998874
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.77 E-value=0.00052 Score=67.34 Aligned_cols=97 Identities=14% Similarity=-0.007 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---------------cccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGE---------------STLCSDVIDALIQLGFLEAAHDILDDMEL 408 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 408 (653)
...|..+-..+.+.|++++|...|++..... +.+ ...|..+..+|.+.|++++|...|++..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3467788888889999999999999988876 444 35577777888888888888888888776
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 409 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
.. +.+...|..+-.+|...|++++|...|++..+
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 53 23667777777778888888888888777766
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.77 E-value=0.00038 Score=66.34 Aligned_cols=96 Identities=7% Similarity=-0.237 Sum_probs=81.5
Q ss_pred chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHH
Q 048743 176 DTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVA-DAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYE 254 (653)
Q Consensus 176 ~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (653)
+...+..+...+.+.|++++|...|+...+. .| +...|..+..++.+.|++++|.+.++...+..+.. ...+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~ 76 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHF 76 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC----HHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHH
Confidence 4567778888999999999999999999876 45 55668889999999999999999999988765333 34688
Q ss_pred HHHHhhhccCCHHHHHHHHHHhc
Q 048743 255 SLLSLHFKFDDIDAAGELILDMN 277 (653)
Q Consensus 255 ~li~~~~~~g~~~~A~~~~~~m~ 277 (653)
.+..+|...|++++|...|++..
T Consensus 77 ~lg~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 77 FLGQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999873
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.73 E-value=0.00049 Score=54.94 Aligned_cols=102 Identities=16% Similarity=-0.038 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (653)
...+..+...+...|++++|...|++..... |.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3467788889999999999999999998877 7777789999999999999999999999998753 336788999999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 424 AYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 424 ~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
++...|++++|...++...+. .|+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~--~~~~ 105 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH--EANN 105 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--CTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHc--CCCC
Confidence 999999999999999998763 4543
No 151
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.73 E-value=0.0083 Score=58.02 Aligned_cols=182 Identities=7% Similarity=-0.134 Sum_probs=130.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcC-ChhhhHHHHHHhhhcCCCcccchhHHHHHHH
Q 048743 180 FNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS-IIILAQIHEMNC-QRDELKKFKCYIDQLSTPFAHHYQQFYESLL 257 (653)
Q Consensus 180 yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li 257 (653)
++.+-....+.+..++|+++++.+... .|+..| |+.--..+...| .++++.++++.+....+..- .+|+---
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny----~aW~hR~ 130 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY----QVWHHRL 130 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH----HHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH----HHHHHHH
Confidence 334334444556668999999999975 677777 776666666677 59999999999887654332 2576666
Q ss_pred Hhhhcc-C-CHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHH
Q 048743 258 SLHFKF-D-DIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLF 335 (653)
Q Consensus 258 ~~~~~~-g-~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (653)
..+.+. + ++++++++++++.+
T Consensus 131 wlL~~l~~~~~~~EL~~~~k~L~--------------------------------------------------------- 153 (349)
T 3q7a_A 131 LLLDRISPQDPVSEIEYIHGSLL--------------------------------------------------------- 153 (349)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHTS---------------------------------------------------------
T ss_pred HHHHHhcCCChHHHHHHHHHHHH---------------------------------------------------------
Confidence 666655 6 88999999999832
Q ss_pred hcCCCCC-CHHHHHHHHHHHHhcCChH--------HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCC-------HHHH
Q 048743 336 RNGKLLH-SNRAMAKLINGYKKHGKNS--------ELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF-------LEAA 399 (653)
Q Consensus 336 ~~~~~~p-~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-------~~~a 399 (653)
..| +...|+.-.-.+.+.|.++ ++++.++++.+.. +.|...|+.....+.+.++ ++++
T Consensus 154 ----~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 154 ----PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp ----SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred ----hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence 222 4456655444444444444 8999999999988 8888889998888888776 6888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 048743 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKMF 431 (653)
Q Consensus 400 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 431 (653)
++.+++...... -|...|+-+-..+.+.|+.
T Consensus 228 Le~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 228 LIYILKSIHLIP-HNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCC
Confidence 888888877543 3788888777777666653
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.72 E-value=7.5e-05 Score=66.98 Aligned_cols=98 Identities=17% Similarity=0.076 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTA 424 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (653)
..|..+-.+|.+.|++++|+..+++..... +.+...|..+..+|...|++++|...|++..+.. +-+...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHH
Confidence 567788888999999999999999998887 7777889999999999999999999999987753 2366778888888
Q ss_pred HHHcCChHHHH-HHHHHHHHcC
Q 048743 425 YYKVKMFREAE-ALLKQMRKSC 445 (653)
Q Consensus 425 ~~~~~~~~~a~-~~~~~m~~~~ 445 (653)
+...++.+++. ..|..|...+
T Consensus 166 ~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 166 VNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 88877777766 5566665543
No 153
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.71 E-value=0.00057 Score=55.90 Aligned_cols=109 Identities=12% Similarity=-0.045 Sum_probs=89.4
Q ss_pred ccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHH
Q 048743 15 EGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLD 94 (653)
Q Consensus 15 ~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 94 (653)
++-..+.+...-..+.+.|++++|++.|+...+. ...++..|..+-.++...|+ .++|+..+.+..+..+. +..
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~--~~~ 82 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-DPENAILYSNRAACLTKLME---FQRALDDCDTCIRLDSK--FIK 82 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT--CHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHhhHHHhhcc---HHHHHHHHHHHHHhhhh--hhH
Confidence 3345677888888999999999999999998874 22345688888888888888 79999999998776654 677
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhH
Q 048743 95 LLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLL 131 (653)
Q Consensus 95 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 131 (653)
.|..+..+|...|++++|++.|++..+. .|+....
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~~a 117 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQV--DPSNEEA 117 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcCCHHH
Confidence 8999999999999999999999999875 5665443
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.69 E-value=0.0003 Score=55.67 Aligned_cols=97 Identities=15% Similarity=-0.089 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM--DSTTYKSLL 422 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li 422 (653)
..+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.. +. +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 356677888899999999999999998877 6777779999999999999999999999998763 23 578899999
Q ss_pred HHHHHc-CChHHHHHHHHHHHHc
Q 048743 423 TAYYKV-KMFREAEALLKQMRKS 444 (653)
Q Consensus 423 ~~~~~~-~~~~~a~~~~~~m~~~ 444 (653)
..+.+. |++++|.+.++...+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 999999 9999999999999875
No 155
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.0052 Score=62.50 Aligned_cols=206 Identities=8% Similarity=-0.045 Sum_probs=137.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcc---------------cHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC
Q 048743 351 INGYKKHGKNSELSWLLLSIKKEHHSFGEST---------------LCSDVIDALIQLGFLEAAHDILDDMELAG-HPMD 414 (653)
Q Consensus 351 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---------------~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~ 414 (653)
...+.+.|++++|++.|.++.+......+.. .+..+...|.+.|++++|.+.+......- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456789999999999999887652222211 26778999999999999999998875421 1122
Q ss_pred HH----HHHHHHHHHHHcCChHHHHHHHHHHHHc----CCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHH
Q 048743 415 ST----TYKSLLTAYYKVKMFREAEALLKQMRKS----CLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL 486 (653)
Q Consensus 415 ~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~ 486 (653)
.. +.+.+-..+...|++++|..+++..... +..+.. ..+. ..+. ..|...|++++|..+
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~-~~la----------~~~~~~g~~~~A~~~ 157 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK--HSLS-IKLA----------TLHYQKKQYKDSLAL 157 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH--HHHH-HHHH----------HHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH--HHHH-HHHH----------HHHHHccChHHHHHH
Confidence 21 2222333344568899999999887652 111111 0111 0111 234458999999999
Q ss_pred HHHHHHccC----CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCC-C-C--HHHHHHHHHHHhccCCHHHHHH
Q 048743 487 IQEMREEAA----LS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEM--KIR-P-T--VETFYYLVYGHSSLEMYRDITI 555 (653)
Q Consensus 487 ~~~m~~~~~----~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~-p-~--~~t~~~li~~~~~~~~~~~a~~ 555 (653)
+++....-. .| ...+|..++..|...|++++|..++++.... .+. | . ...+..+...+...+++++|..
T Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 158 INDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 988764321 22 4567899999999999999999999987652 122 2 1 2456677778889999999999
Q ss_pred HHHHHHHHhhhCCC
Q 048743 556 LWGDIKRNIESGVL 569 (653)
Q Consensus 556 ~~~~~~~~~~~~~~ 569 (653)
.|.+..+.....+.
T Consensus 238 ~~~~a~~~~~~~~~ 251 (434)
T 4b4t_Q 238 YFFESFESYHNLTT 251 (434)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhh
Confidence 99887765444443
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.68 E-value=0.021 Score=54.97 Aligned_cols=87 Identities=14% Similarity=0.071 Sum_probs=53.1
Q ss_pred HHhcCChH-HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048743 354 YKKHGKNS-ELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF----------LEAAHDILDDMELAGHPMDSTTYKSLL 422 (653)
Q Consensus 354 ~~~~~~~~-~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (653)
..+.|.++ +|+.++..+...+ |.+.++|+.--..+...+. +++++.+++.+.... +-+..+|+.--
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~ 115 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 115 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34556654 7889998888877 7666666654333333322 456666666666543 23666666666
Q ss_pred HHHHHcCC--hHHHHHHHHHHHH
Q 048743 423 TAYYKVKM--FREAEALLKQMRK 443 (653)
Q Consensus 423 ~~~~~~~~--~~~a~~~~~~m~~ 443 (653)
..+.+.++ +++++.+++.+.+
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~ 138 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLE 138 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHH
Confidence 66666553 5666666666655
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.68 E-value=0.00036 Score=57.18 Aligned_cols=98 Identities=10% Similarity=-0.029 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAG--HPMD----STTY 418 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~ 418 (653)
..+..+-..+.+.|++++|+..|++..+.. |.+...|..+-.+|.+.|++++|+..|++..+.. ..++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 356788889999999999999999999887 8888889999999999999999999999986532 1222 2467
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc
Q 048743 419 KSLLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 419 ~~li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
..+-.++...|++++|.+.|++..+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77888899999999999999998774
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.66 E-value=0.002 Score=53.14 Aligned_cols=94 Identities=9% Similarity=-0.097 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHH
Q 048743 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETL 579 (653)
Q Consensus 500 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~l 579 (653)
..|..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...++...+. -+.+...|..+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l 83 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSVKAHFFL 83 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CchhHHHHHHH
Confidence 333444444444444444444444443321 112333344444444444444444444433321 01123334444
Q ss_pred HHHHHhCCCHHHHHHHHHHH
Q 048743 580 LLNFLQGGYFERVMEVIGYM 599 (653)
Q Consensus 580 i~~~~~~g~~~~a~~~~~~m 599 (653)
..++...|++++|.+.|++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 44444444444444444433
No 159
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.66 E-value=0.00043 Score=58.56 Aligned_cols=108 Identities=9% Similarity=-0.130 Sum_probs=89.4
Q ss_pred hcccccccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccC
Q 048743 9 QEKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKA 88 (653)
Q Consensus 9 ~~~l~~~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~ 88 (653)
...+...+.+...+..+...+.+.|++++|...|+...+. ...++..|..+-.++...|+ .++|+..|.+.....|
T Consensus 11 ~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-DHYDSRFFLGLGACRQAMGQ---YDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHST
T ss_pred HHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CcccHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCC
Confidence 3556666677888888899999999999999999998773 22345577777788888888 7999999999877665
Q ss_pred CchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcC
Q 048743 89 DLLQLDLLAKLSLSLARAQMPVPASMILRLMLGR 122 (653)
Q Consensus 89 ~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 122 (653)
. +...|..+..+|...|++++|++.|+...+.
T Consensus 87 ~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 X--EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp T--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C--CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 6678888999999999999999999998775
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.65 E-value=0.0005 Score=54.35 Aligned_cols=102 Identities=6% Similarity=-0.037 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYE 577 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~ 577 (653)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+. ..-..+...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV---IEDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---SCCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccchHHHHH
Confidence 45567778888899999999999999988753 235677888888899999999999999887632 11011577888
Q ss_pred HHHHHHHhC-CCHHHHHHHHHHHHhCC
Q 048743 578 TLLLNFLQG-GYFERVMEVIGYMKKQN 603 (653)
Q Consensus 578 ~li~~~~~~-g~~~~a~~~~~~m~~~g 603 (653)
.+...+... |++++|.+.+++..+..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 888899999 99999999999887554
No 161
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.65 E-value=0.0013 Score=55.97 Aligned_cols=100 Identities=9% Similarity=-0.068 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc-CHH
Q 048743 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKI-RPT----VETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV-SRD 574 (653)
Q Consensus 501 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p-~~~ 574 (653)
++..+...|...|++++|.+.+++..+..- .++ ...+..+...+...|++++|..+++...+..+..+..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 455666666777777777777776654210 011 33555666677777777777777777665443333222 234
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 575 LYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 575 ~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
.+..+...+...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 56667777778888888888777654
No 162
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.63 E-value=0.0011 Score=62.06 Aligned_cols=93 Identities=6% Similarity=-0.092 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHh
Q 048743 180 FNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSL 259 (653)
Q Consensus 180 yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~ 259 (653)
+-.+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++++..++......++.. ...++..|-.+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~--~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL--AGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc--HHHHHHHHHHH
Confidence 3455677888999999999998887643 5444322333345555555555555543322211110 01133344444
Q ss_pred hhccCCHHHHHHHHHHh
Q 048743 260 HFKFDDIDAAGELILDM 276 (653)
Q Consensus 260 ~~~~g~~~~A~~~~~~m 276 (653)
+...|++++|+..|++.
T Consensus 181 l~~LG~~~eAl~~l~~a 197 (282)
T 4f3v_A 181 AANLALFTEAERRLTEA 197 (282)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 44445555555554444
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.63 E-value=0.0018 Score=52.98 Aligned_cols=110 Identities=6% Similarity=-0.087 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCc-c-CHHHH
Q 048743 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLA-V-SRDLY 576 (653)
Q Consensus 499 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-p-~~~~y 576 (653)
...+..+-..+.+.|++++|++.|++.++.. +-+...|..+-.+|...|++++|++.++...+.-...... + -..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3457778888999999999999999988753 2246778889999999999999999999876442221111 1 12467
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhH
Q 048743 577 ETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMY 611 (653)
Q Consensus 577 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 611 (653)
..+-.++...|++++|++.|++..+. .||..+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 77888899999999999999988753 4665443
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.62 E-value=0.00065 Score=55.44 Aligned_cols=109 Identities=11% Similarity=-0.002 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccC----HH
Q 048743 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVS----RD 574 (653)
Q Consensus 499 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~----~~ 574 (653)
...|..+...+...|++++|...|++..... +.+...+..+...+...|++++|..+++......... .++ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--REDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--chhHHHHHH
Confidence 4567888888999999999999999998763 3467778888999999999999999999887542221 122 66
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 048743 575 LYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYK 612 (653)
Q Consensus 575 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 612 (653)
.|..+...+...|++++|.+.|++..+. .|+.....
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 116 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLK 116 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHH
Confidence 7888889999999999999999999864 35544443
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.61 E-value=0.00054 Score=55.55 Aligned_cols=94 Identities=10% Similarity=-0.120 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048743 347 MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY 426 (653)
Q Consensus 347 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (653)
+..+-..+.+.|++++|...|++..+.. |.+...|..+-.++...|++++|...|++..+... -+...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 4456677889999999999999999988 88888899999999999999999999999987642 36778899999999
Q ss_pred HcCChHHHHHHHHHHHH
Q 048743 427 KVKMFREAEALLKQMRK 443 (653)
Q Consensus 427 ~~~~~~~a~~~~~~m~~ 443 (653)
+.|++++|...|++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999999876
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.59 E-value=0.0029 Score=50.24 Aligned_cols=99 Identities=11% Similarity=-0.091 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYE 577 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~ 577 (653)
+...|..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|...++...+. .+.+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~ 76 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPDWGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-----CcccHHHHH
Confidence 34567788888999999999999999988753 236777888888999999999999999888643 223577888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhC
Q 048743 578 TLLLNFLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 578 ~li~~~~~~g~~~~a~~~~~~m~~~ 602 (653)
.+...+...|++++|.+.+++..+.
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 8889999999999999999998854
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.59 E-value=0.002 Score=55.37 Aligned_cols=99 Identities=10% Similarity=-0.103 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYE 577 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~ 577 (653)
+...|..+...|.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|+..++...+. -+.+...|.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 83 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV-----DPKYSKAWS 83 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 55678888888999999999999999988753 226778888999999999999999999888743 123577888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhC
Q 048743 578 TLLLNFLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 578 ~li~~~~~~g~~~~a~~~~~~m~~~ 602 (653)
.+..+|...|++++|.+.|++..+.
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 8999999999999999999988754
No 168
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.56 E-value=0.042 Score=52.83 Aligned_cols=203 Identities=10% Similarity=-0.067 Sum_probs=119.2
Q ss_pred hhhHHHHHHH---HHhcCChh-hHHHHHHHHHhcCCCccHHH-HHH---HHHHHHhcC-------ChhhhHHHHHHhhhc
Q 048743 177 TMIFNLVLHA---CVRFGSSL-KGQHIMELMSQTGVVADAHS-III---LAQIHEMNC-------QRDELKKFKCYIDQL 241 (653)
Q Consensus 177 ~~~yn~li~~---~~~~g~~~-~a~~l~~~m~~~g~~p~~~t-~~~---ll~~~~~~g-------~~~~a~~~~~~~~~~ 241 (653)
+..|..+.+. ..+.|.++ +|+++++.+... .|+..| |+. ++....+.. .++++..+++.+...
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence 3445555443 34566664 899999999974 688877 543 333333211 145666666666554
Q ss_pred CCCcccchhHHHHHHHHhhhccC--CHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhH
Q 048743 242 STPFAHHYQQFYESLLSLHFKFD--DIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLE 319 (653)
Q Consensus 242 ~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (653)
.+... .+|+---.++.+.| ++++++.+++++.+.
T Consensus 104 ~PKny----~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~---------------------------------------- 139 (331)
T 3dss_A 104 NPKSY----GTWHHRCWLLSRLPEPNWARELELCARFLEA---------------------------------------- 139 (331)
T ss_dssp CTTCH----HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH----------------------------------------
T ss_pred CCCCH----HHHHHHHHHHhccCcccHHHHHHHHHHHHHh----------------------------------------
Confidence 33222 24655555555555 467777777777320
Q ss_pred HHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHc-----
Q 048743 320 KDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGK-NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL----- 393 (653)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~----- 393 (653)
-+-+...|+.-.-.+...|. ++++++.+.++.+.. |.|...|+.....+.+.
T Consensus 140 --------------------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 140 --------------------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp --------------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC-
T ss_pred --------------------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhccc
Confidence 11244566665555666666 477888888877777 77777777766666554
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHcCCccCc
Q 048743 394 ---------GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV-----------KMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 394 ---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
+.++++++.+....... +-|...|+-+-..+.+. +.++++++.++++.+ +.|+.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~ 271 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN 271 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred cccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc
Confidence 34667777777776543 23666666544444443 235566666666655 34554
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.54 E-value=0.0013 Score=58.68 Aligned_cols=96 Identities=10% Similarity=-0.061 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----------------ccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES----------------TLCSDVIDALIQLGFLEAAHDILDDMELA 409 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 409 (653)
.+..+-..+.+.|++++|...|++..... +.+. .+|..+..+|.+.|++++|...+++..+.
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 46677778888999999999999888755 3332 45777777778888888888888877665
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048743 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 410 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
. +.+...|..+..+|...|++++|...|+...+.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2 335667777777788888888888888777663
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.54 E-value=0.00085 Score=54.71 Aligned_cols=99 Identities=12% Similarity=0.095 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGH--PMD----STTY 418 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~ 418 (653)
..|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+... .++ ..+|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 457788889999999999999999998877 67777799999999999999999999999876432 222 7788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC
Q 048743 419 KSLLTAYYKVKMFREAEALLKQMRKSC 445 (653)
Q Consensus 419 ~~li~~~~~~~~~~~a~~~~~~m~~~~ 445 (653)
..+..++.+.|++++|...|+...+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 889999999999999999999998853
No 171
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.0024 Score=51.94 Aligned_cols=98 Identities=7% Similarity=-0.028 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHH
Q 048743 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYET 578 (653)
Q Consensus 499 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~ 578 (653)
...|..+-..+.+.|++++|++.|++..+.. +.+...|..+..++...|++++|...++...+. -+.+...|..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~ 77 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNFVRAYIR 77 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHHHHHH
Confidence 3456777788889999999999999888753 235778888888999999999999999887633 1235677888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhC
Q 048743 579 LLLNFLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 579 li~~~~~~g~~~~a~~~~~~m~~~ 602 (653)
+..++...|++++|.+.|++..+.
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHh
Confidence 888899999999999999888644
No 172
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.51 E-value=0.00079 Score=56.37 Aligned_cols=107 Identities=7% Similarity=-0.202 Sum_probs=88.0
Q ss_pred cccccccchHHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCC
Q 048743 10 EKLSWEGSSREVLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKAD 89 (653)
Q Consensus 10 ~~l~~~~p~~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 89 (653)
+.+...+.+...+..+...+.+.|++++|...|+...+. ...++..|..+-.++...|+ .++|...|.+.....|.
T Consensus 9 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-DHYDARYFLGLGACRQSLGL---YEQALQSYSYGALMDIN 84 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCCC
Confidence 455566667778888888999999999999999998873 22344577777788888888 79999999998877665
Q ss_pred chhHHHHHHHHHHHHhcCCCchHHHHHHHHHcC
Q 048743 90 LLQLDLLAKLSLSLARAQMPVPASMILRLMLGR 122 (653)
Q Consensus 90 ~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 122 (653)
+...+..+..+|...|++++|+..|+...+.
T Consensus 85 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 85 --EPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp --CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667888899999999999999999998775
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.50 E-value=0.0036 Score=50.93 Aligned_cols=98 Identities=15% Similarity=0.012 Sum_probs=81.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 048743 348 AKLINGYKKHGKNSELSWLLLSIKKEHHSFGES---TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMD---STTYKSL 421 (653)
Q Consensus 348 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~l 421 (653)
..+...+.+.|++++|...|++..+.. |.+. ..+..+...+.+.|++++|...|++..+... .+ ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHH
Confidence 345667888999999999999998876 5555 4678888999999999999999999987542 23 6678888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 422 LTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 422 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
..++...|++++|...|+...+. .|+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~--~p~~ 109 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ--YPGS 109 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCC
Confidence 89999999999999999999875 3554
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=0.0024 Score=53.37 Aligned_cols=61 Identities=15% Similarity=-0.076 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 408 (653)
.|..+...+...|++++|...+++..... +.+...|..+...|...|++++|...|++..+
T Consensus 67 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 67 LHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444445555555555555555544443 33344444455555555555555555555443
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=0.002 Score=53.88 Aligned_cols=103 Identities=13% Similarity=-0.063 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048743 342 HSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGE---STLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTY 418 (653)
Q Consensus 342 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 418 (653)
.+...+..+...+...|++++|...|++..+.. +.+ ...|..+...|...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 356788889999999999999999999998866 544 5668889999999999999999999987753 3367888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCccC
Q 048743 419 KSLLTAYYKVKMFREAEALLKQMRKSCLVQN 449 (653)
Q Consensus 419 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 449 (653)
..+..++...|++++|...|++..+. .|+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~--~p~ 131 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL--EPK 131 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCC
Confidence 89999999999999999999999874 454
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.26 E-value=0.0046 Score=50.30 Aligned_cols=96 Identities=13% Similarity=0.081 Sum_probs=73.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccC----HHH
Q 048743 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPTV----ETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVS----RDL 575 (653)
Q Consensus 504 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~----~~~ 575 (653)
.+...+...|++++|.+.|++..+.. |+. ..+..+..++...|++++|...++.+.+. .|+ ...
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~ 78 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR------YPTHDKAAGG 78 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTSTTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH------CCCCcccHHH
Confidence 45566778999999999999888753 332 46777788889999999999999887633 232 556
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH
Q 048743 576 YETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKL 609 (653)
Q Consensus 576 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 609 (653)
+..+..++...|++++|...|++..+.. |+..
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~ 110 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQY--PGSD 110 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCh
Confidence 7778888999999999999999987653 5543
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.24 E-value=0.0042 Score=52.65 Aligned_cols=136 Identities=6% Similarity=-0.167 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCcc-C
Q 048743 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR-PT----VETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAV-S 572 (653)
Q Consensus 499 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p-~ 572 (653)
..++..+...|...|++++|++.+++..+.... ++ ..++..+...+...|++++|..+++...+..+..+-.+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456788888899999999999999988763111 12 14677888899999999999999999876654443332 2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCC-HHhHHHHH--HHhhhhhHHhhhhhHHHHH
Q 048743 573 RDLYETLLLNFLQGGYFERVMEVIGYMKKQ----NMYVD-KLMYKSEF--LKHHKHLYRRLKVSNARTE 634 (653)
Q Consensus 573 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~l~--~~~~~~~~~~~~~~~~~~~ 634 (653)
...+..+...+...|++++|.+.+++..+. +..+. ...+..+. ....|+.+.|.+..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456777888899999999999999887543 22111 11222222 3445667666665555443
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.20 E-value=0.002 Score=52.10 Aligned_cols=94 Identities=11% Similarity=-0.096 Sum_probs=80.4
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHH
Q 048743 253 YESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQEL 332 (653)
Q Consensus 253 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (653)
+..+...+.+.|++++|...|++..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~------------------------------------------------------ 45 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ------------------------------------------------------ 45 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------------------------------
Confidence 45566778889999999999998832
Q ss_pred HHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048743 333 VLFRNGKLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409 (653)
Q Consensus 333 ~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 409 (653)
..| +...|..+-.++...|++++|+..|++..+.. |.+...+..+...|.+.|++++|...|++..+.
T Consensus 46 -------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 46 -------KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp -------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 234 55678888899999999999999999999988 778888999999999999999999999998764
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.20 E-value=0.00076 Score=54.21 Aligned_cols=84 Identities=8% Similarity=-0.171 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHHHHHHccC-CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 048743 477 MDKSDLAESLIQEMREEAA-LS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDIT 554 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~~-~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~ 554 (653)
.|++++|...|++..+.+. .| +...|..+...|...|++++|++.|++..+... -+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 4667777777777766431 13 556677777777777777777777777776532 23556666777777777777777
Q ss_pred HHHHHHH
Q 048743 555 ILWGDIK 561 (653)
Q Consensus 555 ~~~~~~~ 561 (653)
..++...
T Consensus 82 ~~~~~al 88 (117)
T 3k9i_A 82 ELLLKII 88 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777665
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.17 E-value=0.0014 Score=67.72 Aligned_cols=90 Identities=11% Similarity=-0.055 Sum_probs=76.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 048743 352 NGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMF 431 (653)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 431 (653)
..+.+.|++++|.+.|++..+.. |.+..+|..+..+|.+.|++++|...+++..+.. +-+..+|..+..+|.+.|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34567899999999999988877 7777889999999999999999999999988863 33677888888999999999
Q ss_pred HHHHHHHHHHHHc
Q 048743 432 REAEALLKQMRKS 444 (653)
Q Consensus 432 ~~a~~~~~~m~~~ 444 (653)
++|...|++..+.
T Consensus 91 ~eA~~~~~~al~~ 103 (477)
T 1wao_1 91 RAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988774
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.14 E-value=0.0034 Score=53.79 Aligned_cols=103 Identities=13% Similarity=0.027 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CC--------CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048743 345 RAMAKLINGYKKHGKNSELSWLLLSIKKE--------HH--------SFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408 (653)
Q Consensus 345 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 408 (653)
..+...-..+.+.|++++|+..|.+.... .. .+.+...|..+..+|.+.|++++|...+++..+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45677888899999999999999997765 10 133445688999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 409 AGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 409 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
.. +.+...|..+-.+|...|++++|...|+...+. .|+.
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 64 347889999999999999999999999998874 4653
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.13 E-value=0.00072 Score=54.38 Aligned_cols=88 Identities=9% Similarity=-0.027 Sum_probs=69.5
Q ss_pred hcCChHHHHHHHHHHHhcCC-CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Q 048743 356 KHGKNSELSWLLLSIKKEHH-SFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREA 434 (653)
Q Consensus 356 ~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 434 (653)
..|++++|+..|++..+.+. .|.+...|..+...|.+.|++++|...|++..+... -+...+..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 46888999999999887621 144556688899999999999999999999987643 3678888899999999999999
Q ss_pred HHHHHHHHHc
Q 048743 435 EALLKQMRKS 444 (653)
Q Consensus 435 ~~~~~~m~~~ 444 (653)
...|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998874
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.11 E-value=0.0025 Score=65.81 Aligned_cols=118 Identities=12% Similarity=0.076 Sum_probs=91.3
Q ss_pred ccccccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCH
Q 048743 472 DTSSLMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMY 550 (653)
Q Consensus 472 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 550 (653)
..|...|++++|...+++..+.. | +...|..+..+|.+.|++++|++.+++..+.. +-+...|..+..+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 45667899999999999988764 5 68899999999999999999999999998863 23567888999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCccCHHHHHHHHHH--HHhCCCHHHHHHHHH
Q 048743 551 RDITILWGDIKRNIESGVLAVSRDLYETLLLN--FLQGGYFERVMEVIG 597 (653)
Q Consensus 551 ~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~--~~~~g~~~~a~~~~~ 597 (653)
++|.+.++...+. ..- +...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~---~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV---KPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH---STT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh---CCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999988743 111 22344444444 888899999999988
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.09 E-value=0.0029 Score=64.93 Aligned_cols=127 Identities=9% Similarity=-0.110 Sum_probs=96.0
Q ss_pred ccCCHHHHHHHHHHHHHcc---C---CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-----C-CCCC-HHHHHHHH
Q 048743 476 LMDKSDLAESLIQEMREEA---A---LS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEM-----K-IRPT-VETFYYLV 541 (653)
Q Consensus 476 ~~~~~~~a~~~~~~m~~~~---~---~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~-~~t~~~li 541 (653)
..|++++|+.++++..+.. + .| ...+++.|...|...|++++|+.++++..+. | -.|+ ..+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3799999999998776421 1 22 4567999999999999999999999988752 2 2233 35788999
Q ss_pred HHHhccCCHHHHHHHHHHHHHHhhh-CC-Ccc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 048743 542 YGHSSLEMYRDITILWGDIKRNIES-GV-LAV-SRDLYETLLLNFLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 542 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 602 (653)
..|...|++++|+.+++......+. .| -.| ...+.+.+-.++...|.+++|+.++..+++.
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987654322 12 122 3445666777788899999999999999764
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.09 E-value=0.0041 Score=63.81 Aligned_cols=145 Identities=12% Similarity=-0.057 Sum_probs=104.0
Q ss_pred hHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhh
Q 048743 250 QQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGK 329 (653)
Q Consensus 250 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (653)
...|..+-..|.+.|++++|...|++..+.....+. .. .+...
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~------------------~~---------~~~~~---------- 310 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG------------------LS---------EKESK---------- 310 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS------------------CC---------HHHHH----------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc------------------CC---------hHHHH----------
Confidence 346788889999999999999999988431100000 00 00000
Q ss_pred HHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048743 330 QELVLFRNGKLLH-SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL 408 (653)
Q Consensus 330 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 408 (653)
. ..+ ....|..+-.+|.+.|++++|+..+++..+.. |.+...|..+-.+|...|++++|...|++..+
T Consensus 311 -~--------~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 311 -A--------SESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp -H--------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -H--------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 0 000 13577888899999999999999999999987 77888899999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHHHH
Q 048743 409 AGHPMDSTTYKSLLTAYYKVKMFREAEA-LLKQMRK 443 (653)
Q Consensus 409 ~g~~p~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~ 443 (653)
.. +-+...+..+..++.+.++.+++.. ++..|..
T Consensus 380 l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 380 VN-PQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp TC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 2355678888888988898887764 4555543
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.99 E-value=0.018 Score=59.01 Aligned_cols=106 Identities=10% Similarity=-0.063 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT--------------VETFYYLVYGHSSLEMYRDITILWGDIKRN 563 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~t~~~li~~~~~~~~~~~a~~~~~~~~~~ 563 (653)
....|..+-..|.+.|++++|+..|++..+..-... ...|..+..+|.+.|++++|+..++...+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 455678888889999999999999999887421111 478888889999999999999999988743
Q ss_pred hhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHh
Q 048743 564 IESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLM 610 (653)
Q Consensus 564 ~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 610 (653)
-+.+...|..+..+|...|++++|...|++..+. .|+...
T Consensus 347 -----~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~ 386 (457)
T 1kt0_A 347 -----DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKA 386 (457)
T ss_dssp -----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----C
T ss_pred -----CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHH
Confidence 1236778888999999999999999999998854 455433
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.96 E-value=0.0072 Score=59.89 Aligned_cols=96 Identities=10% Similarity=0.017 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh----------------cCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKK----------------EHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~----------------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 409 (653)
.+..+-..+.+.|++++|+..|++..+ .. +.+..+|..+..+|.+.|++++|...+++..+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~--~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ--PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH--HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 467788888999999999999998776 22 444556888888888888999988888888875
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048743 410 GHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 410 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 444 (653)
. +-+...|..+-.+|...|++++|...|++..+.
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3 236778888888888888888888888888763
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.93 E-value=0.0071 Score=50.84 Aligned_cols=112 Identities=14% Similarity=0.003 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-C-----CH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHh-hhC
Q 048743 500 YKLNSSIYFFCKGKMIGDALKIYRRMQEMKIR-P-----TV-----ETFYYLVYGHSSLEMYRDITILWGDIKRNI-ESG 567 (653)
Q Consensus 500 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-----~~-----~t~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~ 567 (653)
..+...-..+.+.|++++|++.|++.++.... | +. ..|..+-.++.+.|++++|+..++...+.. +..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34556666778899999999999998874222 1 22 388889999999999999999999887421 122
Q ss_pred CCccCH-HHH----HHHHHHHHhCCCHHHHHHHHHHHHh-----CCCCCCHHhH
Q 048743 568 VLAVSR-DLY----ETLLLNFLQGGYFERVMEVIGYMKK-----QNMYVDKLMY 611 (653)
Q Consensus 568 ~~~p~~-~~y----~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~ 611 (653)
.+.|+. ..| ...-.++...|++++|+..|++..+ .|+.+.....
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 336643 466 7788899999999999999998853 3555554433
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.91 E-value=0.029 Score=47.75 Aligned_cols=110 Identities=6% Similarity=-0.012 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-------CC---------CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 499 IYKLNSSIYFFCKGKMIGDALKIYRRMQEM-------KI---------RP-TVETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 499 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-------g~---------~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
...+...-..+.+.|++++|+..|.+.... .- .| +...|..+..+|.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777888899999999999988764 00 12 23578888889999999999999999887
Q ss_pred HHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH-hHHHHH
Q 048743 562 RNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKL-MYKSEF 615 (653)
Q Consensus 562 ~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~l~ 615 (653)
+. -+.+...|..+..+|...|++++|...|++..+. .|+.. .....+
T Consensus 91 ~~-----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~l 138 (162)
T 3rkv_A 91 KR-----EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAREM 138 (162)
T ss_dssp HH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred hc-----CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 43 2335778888999999999999999999998754 56654 444333
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.85 E-value=0.0034 Score=61.49 Aligned_cols=95 Identities=13% Similarity=0.053 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM-DSTTYKSLLTA 424 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~ 424 (653)
.|..+-.+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+. .| +...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l 307 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 67888889999999999999999998887 778888999999999999999999999998664 23 34445544444
Q ss_pred -HHHcCChHHHHHHHHHHHHc
Q 048743 425 -YYKVKMFREAEALLKQMRKS 444 (653)
Q Consensus 425 -~~~~~~~~~a~~~~~~m~~~ 444 (653)
....+..+++..+|..|...
T Consensus 308 ~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 308 AEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCC
Confidence 23446677888888888653
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.0053 Score=48.24 Aligned_cols=90 Identities=17% Similarity=-0.044 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------H
Q 048743 343 SNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMD-------S 415 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-------~ 415 (653)
+...|..+-..+.+.|++++|...|++..+.. |.+...|..+..++.+.|++++|...|++..+.. |+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 44567788889999999999999999998887 7777889999999999999999999999988753 44 4
Q ss_pred HHHHHHHHHHHHcCChHHHHH
Q 048743 416 TTYKSLLTAYYKVKMFREAEA 436 (653)
Q Consensus 416 ~~~~~li~~~~~~~~~~~a~~ 436 (653)
..+..+..++...|+++.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHHhHhhhHh
Confidence 455555555555555554443
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.77 E-value=0.018 Score=48.35 Aligned_cols=96 Identities=14% Similarity=-0.032 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-------Ccc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHC----
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFG-------EST-----LCSDVIDALIQLGFLEAAHDILDDMELA---- 409 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-------~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 409 (653)
.+...-..+.+.|++++|+..|++..+.. |. +.. .|+.+-.++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 45567777889999999999999988766 33 222 6999999999999999999999998874
Q ss_pred -CCCCC-HHHH----HHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 410 -GHPMD-STTY----KSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 410 -g~~p~-~~~~----~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
.+.|+ ...| ...-.++...|++++|+..|++..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 12454 4577 8888999999999999999999887
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.77 E-value=0.013 Score=60.20 Aligned_cols=92 Identities=5% Similarity=-0.092 Sum_probs=70.8
Q ss_pred HHHhcCChhhHHHHHHHHHhcC------CCccH-HHHHHHHHHHHhcCChhhhHHHHHHhhhc----CCCcccchhHHHH
Q 048743 186 ACVRFGSSLKGQHIMELMSQTG------VVADA-HSIIILAQIHEMNCQRDELKKFKCYIDQL----STPFAHHYQQFYE 254 (653)
Q Consensus 186 ~~~~~g~~~~a~~l~~~m~~~g------~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~ 254 (653)
.+...|++++|..++++..+.. -.|+. .+++.|...|...|++++|..+++..... -.++-..-..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557899999999998877531 23444 34889999999999999999988887654 1122222245899
Q ss_pred HHHHhhhccCCHHHHHHHHHHhc
Q 048743 255 SLLSLHFKFDDIDAAGELILDMN 277 (653)
Q Consensus 255 ~li~~~~~~g~~~~A~~~~~~m~ 277 (653)
.|-..|...|++++|..++++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999998873
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.71 E-value=0.0095 Score=47.32 Aligned_cols=81 Identities=12% Similarity=-0.065 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 048743 361 SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQ 440 (653)
Q Consensus 361 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 440 (653)
+.|+..|++..+.. |.+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|+.
T Consensus 2 ~~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35677788777766 7777778888999999999999999999987753 23577888888899999999999999988
Q ss_pred HHHc
Q 048743 441 MRKS 444 (653)
Q Consensus 441 m~~~ 444 (653)
..+.
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8763
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.70 E-value=0.013 Score=58.01 Aligned_cols=90 Identities=13% Similarity=-0.014 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (653)
...|..+-.+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3578888899999999999999999999877 7778889999999999999999999999998753 236677777777
Q ss_pred HHHHcCChHHHHH
Q 048743 424 AYYKVKMFREAEA 436 (653)
Q Consensus 424 ~~~~~~~~~~a~~ 436 (653)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776654
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.0013 Score=51.97 Aligned_cols=92 Identities=11% Similarity=0.009 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccC-----
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVS----- 572 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~----- 572 (653)
+...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...++... ...|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------~~~p~~~~~~ 75 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL------RYTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------TSCSSTTSHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH------HhCCCccHHH
Confidence 45567777778888888888888888877652 2256677777788888888888888887775 34444
Q ss_pred --HHHHHHHHHHHHhCCCHHHHHHHH
Q 048743 573 --RDLYETLLLNFLQGGYFERVMEVI 596 (653)
Q Consensus 573 --~~~y~~li~~~~~~g~~~~a~~~~ 596 (653)
...+..+..++...|+.+.|.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 344444555555555554444433
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.65 E-value=0.018 Score=43.00 Aligned_cols=81 Identities=17% Similarity=0.089 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (653)
...+..+-..+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..+.. +.+...+..+-.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3466777778888888888888888887776 6666678888888888888888888888887643 234556665555
Q ss_pred HHHH
Q 048743 424 AYYK 427 (653)
Q Consensus 424 ~~~~ 427 (653)
++.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.50 E-value=0.0094 Score=58.30 Aligned_cols=84 Identities=7% Similarity=-0.103 Sum_probs=51.7
Q ss_pred ccccCCHHHHHHHHHHHHHccCCCCHH------------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHH
Q 048743 474 SSLMDKSDLAESLIQEMREEAALSTIY------------------KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVE 535 (653)
Q Consensus 474 ~~~~~~~~~a~~~~~~m~~~~~~p~~~------------------~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 535 (653)
+.+.|+++.|...|++..... |+.. .|+.+..+|.+.|++++|+..+++..+.. +-+..
T Consensus 189 ~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 265 (338)
T 2if4_A 189 LFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPK 265 (338)
T ss_dssp TCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHH
T ss_pred HHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 456899999999999877643 4332 45555556666666666666666655532 12345
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHH
Q 048743 536 TFYYLVYGHSSLEMYRDITILWGDI 560 (653)
Q Consensus 536 t~~~li~~~~~~~~~~~a~~~~~~~ 560 (653)
.|..+..+|...|++++|...|+..
T Consensus 266 a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 266 ALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555556666666666666666544
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.46 E-value=0.18 Score=52.83 Aligned_cols=173 Identities=8% Similarity=-0.030 Sum_probs=111.9
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048743 359 KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF----------LEAAHDILDDMELAGHPMDSTTYKSLLTAYYKV 428 (653)
Q Consensus 359 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 428 (653)
.-++|++.++++.... |.+..+|+.--..+.+.|+ +++++..++.+.+... -+..+|+.--.++.+.
T Consensus 44 ~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 3467788888888877 7777777776666666665 7777777777776533 3666777666666666
Q ss_pred C--ChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 048743 429 K--MFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSI 506 (653)
Q Consensus 429 ~--~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li 506 (653)
+ +++++++.++.+.+. .|. |...|+.--
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~------------------------------------------------N~~aW~~R~ 150 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DER------------------------------------------------NFHCWDYRR 150 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTT------------------------------------------------CHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhh--ccc------------------------------------------------cccHHHHHH
Confidence 6 456677666666653 232 555566665
Q ss_pred HHHHcCC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc--------------CCHHHHHHHHHHHHHHhhhCCCcc
Q 048743 507 YFFCKGK-MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL--------------EMYRDITILWGDIKRNIESGVLAV 571 (653)
Q Consensus 507 ~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~p 571 (653)
..+.+.| .++++++.+.++++.... |...|+.....+.+. +.++++.++++..... -+-
T Consensus 151 ~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~-----~P~ 224 (567)
T 1dce_A 151 FVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----DPN 224 (567)
T ss_dssp HHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH-----CSS
T ss_pred HHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh-----CCC
Confidence 5666666 778888888877765432 556666555554442 4567888888776632 123
Q ss_pred CHHHHHHHHHHHHhCCCHH
Q 048743 572 SRDLYETLLLNFLQGGYFE 590 (653)
Q Consensus 572 ~~~~y~~li~~~~~~g~~~ 590 (653)
|...|+..-..+.+.++.+
T Consensus 225 ~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 225 DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CSHHHHHHHHHHSCCCCCS
T ss_pred CccHHHHHHHHHhcCCCcc
Confidence 5667777666666666633
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.32 E-value=0.032 Score=44.17 Aligned_cols=78 Identities=8% Similarity=0.006 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048743 482 LAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDI 560 (653)
Q Consensus 482 ~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~ 560 (653)
.|...|++..+.. | +...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|+..
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555666665543 4 67788888888899999999999999888753 234667788888888999999999888877
Q ss_pred HH
Q 048743 561 KR 562 (653)
Q Consensus 561 ~~ 562 (653)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.22 E-value=0.026 Score=43.48 Aligned_cols=62 Identities=13% Similarity=-0.068 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 407 (653)
...+..+-..|.+.|++++|+..|++..+.. |.+...|..+..+|.+.|++++|...|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555556666666666666666665555 4444556666666666666666666665544
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.20 E-value=0.1 Score=42.92 Aligned_cols=49 Identities=10% Similarity=-0.105 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhcC
Q 048743 478 DKSDLAESLIQEMREEAALSTIYKLNSSIYFFCK----GKMIGDALKIYRRMQEMK 529 (653)
Q Consensus 478 ~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g 529 (653)
++.++|...|++..+.| +...+..|-..|.. .++.++|.++|++..+.|
T Consensus 75 ~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 75 KDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 34444444444444443 34445555555555 566777777777666654
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.13 E-value=0.13 Score=42.34 Aligned_cols=114 Identities=6% Similarity=-0.158 Sum_probs=90.0
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc----cCCHHH
Q 048743 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSS----LEMYRD 552 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~ 552 (653)
.++.++|...|++..+.|. |+.. |-..|...+.+++|+++|++..+.| +...+..|-..|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 4678899999999998883 3333 6666667778999999999998875 56677777777777 789999
Q ss_pred HHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCC
Q 048743 553 ITILWGDIKRNIESGVLAVSRDLYETLLLNFLQ----GGYFERVMEVIGYMKKQNMY 605 (653)
Q Consensus 553 a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~ 605 (653)
|.++|+...+ . -+...+..|-..|.. .++.++|.+.|++..+.|..
T Consensus 80 A~~~~~~Aa~----~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 80 AAQYYSKACG----L---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHH----T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHc----C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 9999987752 2 346677778888888 89999999999999888753
No 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.09 E-value=0.21 Score=48.28 Aligned_cols=86 Identities=7% Similarity=-0.134 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYE 577 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~ 577 (653)
+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.++... .+.|...+|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al------rL~P~~~t~~ 347 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF------NLRPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHSCSHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH------hcCCCcChHH
Confidence 77788887777777799999999999888875 787777777788888999999998888776 3567777765
Q ss_pred HHHHHHHhCCCHHHH
Q 048743 578 TLLLNFLQGGYFERV 592 (653)
Q Consensus 578 ~li~~~~~~g~~~~a 592 (653)
+...+.-.-+++..
T Consensus 348 -~~~~l~F~sn~~~i 361 (372)
T 3ly7_A 348 -WIENGIFQTSVPYV 361 (372)
T ss_dssp -HHHHSSSCCCHHHH
T ss_pred -HHhCceeecchhhh
Confidence 34444444444443
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.94 E-value=0.034 Score=42.76 Aligned_cols=64 Identities=16% Similarity=0.064 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKR 562 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~ 562 (653)
+...|..+...|...|++++|++.|++..+... -+...|..+..+|...|++++|...++...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 667788888899999999999999999887532 2456788888899999999999998887653
No 206
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.90 E-value=0.41 Score=52.87 Aligned_cols=45 Identities=18% Similarity=0.018 Sum_probs=22.5
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 048743 355 KKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406 (653)
Q Consensus 355 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 406 (653)
...|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+
T Consensus 663 l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455555555553322 22233555555555555555555555544
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.89 E-value=0.14 Score=53.72 Aligned_cols=173 Identities=9% Similarity=-0.087 Sum_probs=104.9
Q ss_pred hcCC-hhhHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcCC----------hhhhHHHHHHhhhcCCCcccchhHHHHHH
Q 048743 189 RFGS-SLKGQHIMELMSQTGVVADAHS-IIILAQIHEMNCQ----------RDELKKFKCYIDQLSTPFAHHYQQFYESL 256 (653)
Q Consensus 189 ~~g~-~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 256 (653)
+.|. .++|++.++.+.+. .|+.+| |+.--.++...|+ ++++.++++.+.+..+..- .+|+--
T Consensus 40 ~~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y----~aW~hR 113 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY----GTWHHR 113 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH----HHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH----HHHHHH
Confidence 4444 46889999999975 677776 5544444444444 6667777777666543222 246665
Q ss_pred HHhhhccC--CHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHH
Q 048743 257 LSLHFKFD--DIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVL 334 (653)
Q Consensus 257 i~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (653)
-.++.+.| +++++.++++++.+.
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~------------------------------------------------------- 138 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEA------------------------------------------------------- 138 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred HHHHHHcccccHHHHHHHHHHHHhh-------------------------------------------------------
Confidence 66666666 557777777777320
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHc--------------CCHHHH
Q 048743 335 FRNGKLLHSNRAMAKLINGYKKHG-KNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQL--------------GFLEAA 399 (653)
Q Consensus 335 ~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~a 399 (653)
-+-+...|+.--..+.+.| .++++++.+.++.+.. +.+...|+.....+.+. +.++++
T Consensus 139 -----d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~ee 211 (567)
T 1dce_A 139 -----DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE 211 (567)
T ss_dssp -----CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH
T ss_pred -----ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhcccccccccccccHHHHHHH
Confidence 1124456666555566666 6777777777777666 66666677666666553 345666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048743 400 HDILDDMELAGHPMDSTTYKSLLTAYYKVKM 430 (653)
Q Consensus 400 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 430 (653)
++.++...... +-|...|+-+-..+.+.++
T Consensus 212 l~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 212 LELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 66666665542 2255666665555555554
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.80 E-value=0.12 Score=38.23 Aligned_cols=82 Identities=11% Similarity=0.042 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYE 577 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~ 577 (653)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+. -+.+...+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~~ 81 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAKQ 81 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCHHHHH
Confidence 34567777777888888888888888877653 224566777777888888888888888776532 122344555
Q ss_pred HHHHHHHh
Q 048743 578 TLLLNFLQ 585 (653)
Q Consensus 578 ~li~~~~~ 585 (653)
.+...+.+
T Consensus 82 ~l~~~~~~ 89 (91)
T 1na3_A 82 NLGNAKQK 89 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55444443
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.72 E-value=0.093 Score=58.17 Aligned_cols=155 Identities=14% Similarity=0.093 Sum_probs=107.3
Q ss_pred HHHHhcCChhhHHH-HHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhcc
Q 048743 185 HACVRFGSSLKGQH-IMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKF 263 (653)
Q Consensus 185 ~~~~~~g~~~~a~~-l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 263 (653)
......+++++|.+ ++.. .|+......++..+.+.|..+.|.++.+.- ..-.......
T Consensus 607 ~~~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~---------------~~~f~~~l~~ 665 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPDQ---------------DQKFELALKV 665 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCCH---------------HHHHHHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCCc---------------chheehhhhc
Confidence 34456788888876 5422 121122266777778888888887665321 1112334567
Q ss_pred CCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCC
Q 048743 264 DDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHS 343 (653)
Q Consensus 264 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 343 (653)
|++++|.++.+.+ .+
T Consensus 666 ~~~~~A~~~~~~~-----------------------------------------------------------------~~ 680 (814)
T 3mkq_A 666 GQLTLARDLLTDE-----------------------------------------------------------------SA 680 (814)
T ss_dssp TCHHHHHHHHTTC-----------------------------------------------------------------CC
T ss_pred CCHHHHHHHHHhh-----------------------------------------------------------------Cc
Confidence 9999998887666 45
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048743 344 NRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423 (653)
Q Consensus 344 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (653)
...|..+-..+.+.++++.|++.|.++.. |..+...+...|+.+...++-+.....|- ++....
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~ 744 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFN 744 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHH
Confidence 66899999999999999999999998753 77777778888888887777666655542 244555
Q ss_pred HHHHcCChHHHHHHHHHH
Q 048743 424 AYYKVKMFREAEALLKQM 441 (653)
Q Consensus 424 ~~~~~~~~~~a~~~~~~m 441 (653)
+|.+.|++++|.+++.++
T Consensus 745 ~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 745 AYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHTCHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHc
Confidence 677788888888887554
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.46 E-value=0.12 Score=51.86 Aligned_cols=90 Identities=10% Similarity=-0.014 Sum_probs=64.3
Q ss_pred cCCCHHHHHHHHHHHHh---cCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhh-C-CCcc-CHHHHHHHH
Q 048743 511 KGKMIGDALKIYRRMQE---MKIRPT----VETFYYLVYGHSSLEMYRDITILWGDIKRNIES-G-VLAV-SRDLYETLL 580 (653)
Q Consensus 511 ~~g~~~~a~~~~~~m~~---~g~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~p-~~~~y~~li 580 (653)
..|++++|+.++++..+ .-+.|+ ..+++.|..+|...|++++|..+++......+. . .-.| ...+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35778888888887665 223333 357888888888888888888888876644221 1 2223 345688899
Q ss_pred HHHHhCCCHHHHHHHHHHHH
Q 048743 581 LNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 581 ~~~~~~g~~~~a~~~~~~m~ 600 (653)
..|..+|++++|+.++++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 99999999999999988775
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.41 E-value=0.1 Score=52.50 Aligned_cols=95 Identities=7% Similarity=-0.052 Sum_probs=73.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhh--CCCcc-CHHH
Q 048743 506 IYFFCKGKMIGDALKIYRRMQEM---KIRPT----VETFYYLVYGHSSLEMYRDITILWGDIKRNIES--GVLAV-SRDL 575 (653)
Q Consensus 506 i~~~~~~g~~~~a~~~~~~m~~~---g~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~p-~~~~ 575 (653)
+..+.+.|++++|++++++..+. -+.|+ ..+++.|..+|...|++++|+.+++......+. +.-.| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566789999999999998863 23333 357889999999999999999999987654322 12233 3456
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 576 YETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 576 y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
|+.|...|..+|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8889999999999999999998775
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.34 E-value=0.033 Score=46.68 Aligned_cols=91 Identities=11% Similarity=-0.002 Sum_probs=74.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048743 355 KKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFL----------EAAHDILDDMELAGHPMDSTTYKSLLTA 424 (653)
Q Consensus 355 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (653)
.+.+.+++|.+.++...+.. |.+...|..+-.++...+++ ++|+..|++..+... -+..+|..+-.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-CcHHHHHHHHHH
Confidence 45567899999999999988 88888899888888888764 599999999887542 267789999999
Q ss_pred HHHcC-----------ChHHHHHHHHHHHHcCCccCc
Q 048743 425 YYKVK-----------MFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 425 ~~~~~-----------~~~~a~~~~~~m~~~~~~p~~ 450 (653)
|...| ++++|.+.|++..+ +.|+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~ 124 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDN 124 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCC
Confidence 98774 89999999999988 46764
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.24 E-value=0.036 Score=46.44 Aligned_cols=96 Identities=8% Similarity=-0.012 Sum_probs=66.9
Q ss_pred ccCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCH----------HHHHHHHHHHHhcCCCC-CHHHHHHHHHH
Q 048743 476 LMDKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMI----------GDALKIYRRMQEMKIRP-TVETFYYLVYG 543 (653)
Q Consensus 476 ~~~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~----------~~a~~~~~~m~~~g~~p-~~~t~~~li~~ 543 (653)
+.+.+++|...++...+.. | +...|+.+-.++...+++ ++|+..|++.++. .| +...|..+-.+
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 3567788888888888765 5 777888777788777654 5888888887774 44 45677788888
Q ss_pred HhccC-----------CHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHH
Q 048743 544 HSSLE-----------MYRDITILWGDIKRNIESGVLAVSRDLYETLLL 581 (653)
Q Consensus 544 ~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~ 581 (653)
|...| ++++|.+.|+... .+.|+...|...+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl------~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAV------DEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHH------HHCTTCHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHH------HhCCCCHHHHHHHH
Confidence 87664 6777777777665 34566555544443
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.81 E-value=0.15 Score=51.19 Aligned_cols=87 Identities=9% Similarity=-0.106 Sum_probs=69.2
Q ss_pred cCCHHHHHHHHHHHHHc---cCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-----C-CCCCH-HHHHHHHH
Q 048743 477 MDKSDLAESLIQEMREE---AALS----TIYKLNSSIYFFCKGKMIGDALKIYRRMQEM-----K-IRPTV-ETFYYLVY 542 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~---~~~p----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~~-~t~~~li~ 542 (653)
.|++++|+.++++..+. -+.| ...+++.|...|...|++++|+.++++..+- | -.|+. .+|+.|-.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 57899999999876642 2223 4567999999999999999999999998752 2 23443 56899999
Q ss_pred HHhccCCHHHHHHHHHHHHHH
Q 048743 543 GHSSLEMYRDITILWGDIKRN 563 (653)
Q Consensus 543 ~~~~~~~~~~a~~~~~~~~~~ 563 (653)
.|...|++++|+.++++..+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 999999999999999887643
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.78 E-value=0.28 Score=49.32 Aligned_cols=95 Identities=19% Similarity=0.039 Sum_probs=73.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC--CCCC----cccHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-H
Q 048743 349 KLINGYKKHGKNSELSWLLLSIKKEHH--SFGE----STLCSDVIDALIQLGFLEAAHDILDDMELA-----G-HPMD-S 415 (653)
Q Consensus 349 ~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~-~ 415 (653)
..+..+.+.|++++|+.++++..+... ..++ ..+++.+..+|...|++++|..++++..+- | -.|+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 446667789999999999998875421 1222 235888999999999999999999987541 2 2233 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 416 TTYKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 416 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
.+|+.|-..|...|++++|+.++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5789999999999999999999988765
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.70 E-value=0.15 Score=38.72 Aligned_cols=59 Identities=12% Similarity=-0.058 Sum_probs=45.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcc-cHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048743 350 LINGYKKHGKNSELSWLLLSIKKEHHSFGEST-LCSDVIDALIQLGFLEAAHDILDDMELAG 410 (653)
Q Consensus 350 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g 410 (653)
....+.+.|++++|...|++..+.. |.+.. .|..+...|...|++++|...|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455677888888888888887776 66666 67888888888888888888888887653
No 217
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.44 E-value=1.3 Score=37.58 Aligned_cols=83 Identities=10% Similarity=0.119 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048743 342 HSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSL 421 (653)
Q Consensus 342 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 421 (653)
-+...|..|-+...+.|+++-|++.|.+... +..+.-.|.-.|+.++..++-+.-...| -++..
T Consensus 32 ~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~a 95 (177)
T 3mkq_B 32 NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSM 95 (177)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHH
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHH
Confidence 3566899999999999999999999998643 7778778888899888776665555544 24555
Q ss_pred HHHHHHcCChHHHHHHHHH
Q 048743 422 LTAYYKVKMFREAEALLKQ 440 (653)
Q Consensus 422 i~~~~~~~~~~~a~~~~~~ 440 (653)
...+.-.|+++++.++|.+
T Consensus 96 f~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 96 LLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 6667778999999888743
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.30 E-value=0.51 Score=39.04 Aligned_cols=86 Identities=10% Similarity=0.030 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChHHH
Q 048743 360 NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG---FLEAAHDILDDMELAGHPM--DSTTYKSLLTAYYKVKMFREA 434 (653)
Q Consensus 360 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~a 434 (653)
...+.+-|.+....+ +++..+.-.+--++++++ +++++..+|++..+.. .| ....+-.|--+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 345666666666666 456666777777888887 6668999999988764 24 345556667788999999999
Q ss_pred HHHHHHHHHcCCccCc
Q 048743 435 EALLKQMRKSCLVQNL 450 (653)
Q Consensus 435 ~~~~~~m~~~~~~p~~ 450 (653)
.+.++.+.+ +.|+.
T Consensus 91 ~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHHH--HCTTC
T ss_pred HHHHHHHHh--cCCCC
Confidence 999999988 56764
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.69 E-value=1.2 Score=37.74 Aligned_cols=126 Identities=12% Similarity=-0.022 Sum_probs=84.9
Q ss_pred HhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhcccccchhccCC
Q 048743 223 EMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQDAQKPYLISIGS 302 (653)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (653)
...|+++.|.++.+.+.. ...|..|-+.....|+++-|.+.|.+...
T Consensus 16 L~lg~l~~A~e~a~~l~~---------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------------------ 62 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLND---------SITWERLIQEALAQGNASLAEMIYQTQHS------------------------ 62 (177)
T ss_dssp HHTTCHHHHHHHHHHHCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------------------
T ss_pred HhcCCHHHHHHHHHHhCC---------HHHHHHHHHHHHHcCChHHHHHHHHHhCC------------------------
Confidence 345777777777665522 23588888888888999999999888831
Q ss_pred CcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCccc
Q 048743 303 PNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTL 382 (653)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 382 (653)
|..+.-.|.-.|+.++..++-+....+| .
T Consensus 63 --------------------------------------------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~- 91 (177)
T 3mkq_B 63 --------------------------------------------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------D- 91 (177)
T ss_dssp --------------------------------------------HHHHHHHHHHHTCHHHHHHHHHHHHHTT------C-
T ss_pred --------------------------------------------HHHHHHHHHHhCCHHHHHHHHHHHHHCc------c-
Confidence 4566666777888877776666555554 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 048743 383 CSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQM 441 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 441 (653)
++.-...+.-.|+++++.++|.+... .|... -.....|..+.|.++.+.+
T Consensus 92 ~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 92 FGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 77778888888999999998865322 22111 1112356677777777665
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.40 E-value=0.64 Score=34.91 Aligned_cols=65 Identities=14% Similarity=-0.074 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048743 343 SNRAMAKLINGYKKHGK---NSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409 (653)
Q Consensus 343 ~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 409 (653)
+...+..+-.++...++ .++|..++++..+.. |.+......+-..+.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555543333 577777777777766 666666677777777777777777777777664
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.26 E-value=0.61 Score=38.55 Aligned_cols=95 Identities=15% Similarity=0.010 Sum_probs=69.9
Q ss_pred hhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCch--hHHHHHHHHHHHHhcCCCchH
Q 048743 35 VGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLL--QLDLLAKLSLSLARAQMPVPA 112 (653)
Q Consensus 35 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~t~~~li~~~~~~g~~~~a 112 (653)
...+.+-|++.... +.++..+--.+-.+++++..+..+++++.+|+++.+.. .| ..+.+-.+..++.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~-~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHH
Confidence 44555566655442 34677777777778888888777999999999998765 13 345555566788999999999
Q ss_pred HHHHHHHHcCccCCCchhHHHH
Q 048743 113 SMILRLMLGRENLPCSDLLLLV 134 (653)
Q Consensus 113 ~~~~~~m~~~g~~p~~~~~~~l 134 (653)
.+.++.+.+. .|+..-...+
T Consensus 91 ~~y~~~lL~i--eP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHH
Confidence 9999999886 6776554444
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.07 E-value=1.2 Score=43.01 Aligned_cols=135 Identities=6% Similarity=-0.145 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHc----CC-CHHHHHHHHHHHH---h-cCCCCCHHHHHHHHHHHhccC
Q 048743 479 KSDLAESLIQEMREEAALS-TIYKLNSSIYFFCK----GK-MIGDALKIYRRMQ---E-MKIRPTVETFYYLVYGHSSLE 548 (653)
Q Consensus 479 ~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~----~g-~~~~a~~~~~~m~---~-~g~~p~~~t~~~li~~~~~~~ 548 (653)
...+|..+|++..+.. | ....|..+..+|.. .+ .......+-..+. . ..-..+..+|..+...+...|
T Consensus 214 ~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~g 291 (372)
T 3ly7_A 214 SLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291 (372)
T ss_dssp HHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCC
Confidence 4678899999988765 6 34555544444431 11 1112221111111 1 223567788888877777789
Q ss_pred CHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHH-HHhhhhhH
Q 048743 549 MYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEF-LKHHKHLY 623 (653)
Q Consensus 549 ~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-~~~~~~~~ 623 (653)
++++|...++.+... .|+...|..+-..+.-.|++++|.+.+++... +.|...||...- ..+..+++
T Consensus 292 d~d~A~~~l~rAl~L------n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~~~l~F~sn~~ 359 (372)
T 3ly7_A 292 KTDESYQAINTGIDL------EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWIENGIFQTSVP 359 (372)
T ss_dssp CHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHHHHSSSCCCHH
T ss_pred CHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHHhCceeecchh
Confidence 999999999988743 37888887888889999999999999988874 468877775443 22344443
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.97 E-value=1.1 Score=34.38 Aligned_cols=76 Identities=12% Similarity=0.111 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCC--CccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHh
Q 048743 533 TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV--LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLM 610 (653)
Q Consensus 533 ~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 610 (653)
+..-+-.|...+...|+++.|...++...+...... -.+....+..+..++.+.|++++|..++++..+ +.|+...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHH
Confidence 444455677777788888888888887765543221 234556778888888888888888888888874 4565433
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.87 E-value=0.75 Score=34.51 Aligned_cols=70 Identities=11% Similarity=-0.052 Sum_probs=55.1
Q ss_pred CCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCc
Q 048743 52 PERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRE 123 (653)
Q Consensus 52 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 123 (653)
.++..+..+-.++...++.....+|..++.+..+.+|. +......+-..+.+.|++++|+..++.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~--~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY--NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 35566667777776666655568999999998877765 67777788888999999999999999998874
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.39 E-value=3.5 Score=32.94 Aligned_cols=121 Identities=9% Similarity=-0.054 Sum_probs=83.3
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-cC----------------CCCCHHHHHH
Q 048743 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE-MK----------------IRPTVETFYY 539 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-~g----------------~~p~~~t~~~ 539 (653)
.|.+++..+++.+..... +..-||-.|--....-+-+-..++++..=. .. ...+...++.
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~ 96 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK 96 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHH
Confidence 688888888888888754 444455554444444444444444443321 00 1235566777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 048743 540 LVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMY 605 (653)
Q Consensus 540 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 605 (653)
.+..+...|+-|.-.++...+. .+-.|+....-.+..+|.+-|+..+|.+++.+..++|++
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l-----~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREIL-----KNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHhHHHHHHHHHh-----ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 7888888888888877776643 256788888888999999999999999999999999974
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.27 E-value=2 Score=34.04 Aligned_cols=102 Identities=13% Similarity=0.001 Sum_probs=71.4
Q ss_pred HhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCC
Q 048743 30 SKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMP 109 (653)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~ 109 (653)
.....+..+.+-|+..... +.++..+--.+-.++.++..+....+++.++.++.+.....-..+-.-.|.-++.|.|++
T Consensus 12 ~~~~~l~~~~~~y~~e~~~-~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAA-GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 3444555566666665443 447777666677788889988888999999999877531111344455566799999999
Q ss_pred chHHHHHHHHHcCccCCCchhHHHH
Q 048743 110 VPASMILRLMLGRENLPCSDLLLLV 134 (653)
Q Consensus 110 ~~a~~~~~~m~~~g~~p~~~~~~~l 134 (653)
+.|.+.++.+.+. .|+..-...|
T Consensus 91 ~~A~~~~~~lL~~--eP~n~QA~~L 113 (126)
T 1nzn_A 91 EKALKYVRGLLQT--EPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999999886 6765544433
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.24 E-value=2.5 Score=34.54 Aligned_cols=110 Identities=14% Similarity=0.051 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCccCch-hhHHHHhhHHHHhhhcccccccccccCCHHHHHHH
Q 048743 414 DSTTYKSLLTAYYKVKMF------REAEALLKQMRKSCLVQNLS-CEMVVSERFSEVADKSASFTDTSSLMDKSDLAESL 486 (653)
Q Consensus 414 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~ 486 (653)
|..+|-..+...-+.|++ ++..++|++.... ++|+.. ..--+..+...+.. +...+++++|.++
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~--------~~ei~D~d~aR~v 82 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAE--------LKAIQEPDDARDY 82 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHH--------HHHHHCGGGCHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHH--------HHHhcCHHHHHHH
Confidence 667777777777777877 7777888877664 666531 00000000011111 1124688888888
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 048743 487 IQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT 533 (653)
Q Consensus 487 ~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 533 (653)
|+.+.+.+-.- ...|-.....=.+.|++.+|.+++...+..+.+|.
T Consensus 83 y~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 83 FQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 88886542222 56666666666788888888888888877665554
No 228
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.81 E-value=0.16 Score=50.44 Aligned_cols=218 Identities=15% Similarity=0.068 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHH
Q 048743 21 VLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLS 100 (653)
Q Consensus 21 ~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li 100 (653)
++..+-++..+.+++.+|+.-|=. ..++..|..++.+..++|. .++-+..+ .|.+... -++..=+.|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~---~edLv~yL-~MaRk~~--ke~~IDteLi 123 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGN---WEELVKYL-QMARKKA--RESYVETELI 123 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSC---CTTHHHHH-HTTSTTC--CSTTTTHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCC---HHHHHHHH-HHHHHHh--cccccHHHHH
Confidence 556677777777777777665432 3566777788888888877 45555555 4433332 2344445778
Q ss_pred HHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccc------------cccchHHHHHHHHHhhhhhhhhcC
Q 048743 101 LSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIG------------TCLASNFLIQLCDVFLHLSAEKSN 168 (653)
Q Consensus 101 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~ 168 (653)
.+|++.++..+-.+.+ -.||..-...+=..|...+.- .......++..-.-.+.++.|++
T Consensus 124 ~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK- 195 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK- 195 (624)
T ss_dssp HHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT-
T ss_pred HHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 8888888876644433 134444333332333322210 00001111111111112222222
Q ss_pred CccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccc
Q 048743 169 GAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHH 248 (653)
Q Consensus 169 ~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 248 (653)
.-++.||-.+-.+|...+.+.-|.-.--.+.- .||. ...++..|...|-+++...+++.-..... .
T Consensus 196 -----Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglglEr----A 261 (624)
T 3lvg_A 196 -----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGLER----A 261 (624)
T ss_dssp -----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTT----C
T ss_pred -----cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCc----h
Confidence 23566777777777777777666554433332 2221 22345556667777777776665543221 1
Q ss_pred hhHHHHHHHHhhhccCCHHHHHHHH
Q 048743 249 YQQFYESLLSLHFKFDDIDAAGELI 273 (653)
Q Consensus 249 ~~~~~~~li~~~~~~g~~~~A~~~~ 273 (653)
..-+|+-|--.|++- ++++-.+.+
T Consensus 262 HmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 262 HMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp CHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 223566666666654 334433333
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.28 E-value=4.8 Score=32.20 Aligned_cols=79 Identities=9% Similarity=-0.066 Sum_probs=48.1
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 048743 477 MDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITIL 556 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~ 556 (653)
+|++......+-.+.. +....+..++.+...|+-++-.+++.++.. +.+|++.....+-.+|.+.|+..+|.++
T Consensus 74 C~NlKrVi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp CSCTHHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 5555555555444332 344556666677777777777777776433 3456666666777777777777777776
Q ss_pred HHHHH
Q 048743 557 WGDIK 561 (653)
Q Consensus 557 ~~~~~ 561 (653)
+.+.-
T Consensus 148 l~~AC 152 (172)
T 1wy6_A 148 LIEAC 152 (172)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.09 E-value=0.75 Score=42.61 Aligned_cols=75 Identities=13% Similarity=0.009 Sum_probs=57.4
Q ss_pred CCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCC-CcccHHHHHHHHHHc-CCHHHHHHHHHHHHHC
Q 048743 340 LLHS---NRAMAKLINGYKKH-----GKNSELSWLLLSIKKEHHSFG-ESTLCSDVIDALIQL-GFLEAAHDILDDMELA 409 (653)
Q Consensus 340 ~~p~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 409 (653)
+.|+ ...|..+...|.+. |+.++|.+.|++..+-+ |. +..++......++.. |+.+.+.+.+++....
T Consensus 192 LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 192 LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--SAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 4455 45777888888884 89999999999988877 54 367778888888884 8899999999998887
Q ss_pred CCC--CCHH
Q 048743 410 GHP--MDST 416 (653)
Q Consensus 410 g~~--p~~~ 416 (653)
... |+..
T Consensus 270 ~p~~~P~~~ 278 (301)
T 3u64_A 270 DPESVPHNK 278 (301)
T ss_dssp CGGGCSSCH
T ss_pred CCCCCCChh
Confidence 655 5544
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.23 E-value=1.3 Score=33.97 Aligned_cols=64 Identities=9% Similarity=-0.119 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMK------IRPTVETFYYLVYGHSSLEMYRDITILWGDIK 561 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g------~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~ 561 (653)
+..-+-.|-..+.+.|+++.|...|+...+.- -.+....+..|..++.+.|+++.|..+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44456678888899999999999999887631 12346678899999999999999999998886
No 232
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=89.67 E-value=2.6 Score=31.37 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=44.7
Q ss_pred HHHHHHhccchhHHHHHHHHhhhhcCCC-Cch-hHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchh
Q 048743 25 KLESASKNHQVGEAWETFNDFQRLHGIP-ERH-VVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQ 92 (653)
Q Consensus 25 ~i~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 92 (653)
....+.+.|++++|.+.|+...+. .| +.. .+..+-..+...|+ .++|...|.+..+..+..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGD---WQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcHH
Confidence 345667888999999999888774 23 334 66666677777777 78888888888776655333
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.49 E-value=19 Score=36.15 Aligned_cols=98 Identities=13% Similarity=0.015 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCH--HH
Q 048743 503 NSSIYFFCKGKMIGDALKIYRRMQEM--KIRPT---VETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSR--DL 575 (653)
Q Consensus 503 ~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~--~~ 575 (653)
..|...|...|++.+|.+++.++... |.-.. ...|...++.|...+++..|..+...+..........|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45667777788888888888887642 22211 2356667777888888888888887765333333333332 34
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 576 YETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 576 y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
|...+..+...+++.+|.+.|.+.-
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5666777777888888877776663
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=89.26 E-value=8 Score=35.82 Aligned_cols=109 Identities=8% Similarity=-0.061 Sum_probs=76.3
Q ss_pred cCCHHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc-
Q 048743 477 MDKSDLAESLIQEMREEAALST---IYKLNSSIYFFCK-----GKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSL- 547 (653)
Q Consensus 477 ~~~~~~a~~~~~~m~~~~~~p~---~~~y~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~- 547 (653)
.+....|..++++..+.. |+ -..|..+...|.+ .|+.++|.+.|++..+.+-.-+..++....+.++..
T Consensus 176 l~~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 176 PDTVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred HHhHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 345667788888877765 64 5578888888888 499999999999988853222366777788888884
Q ss_pred CCHHHHHHHHHHHHHHhhhCCCc--cCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 048743 548 EMYRDITILWGDIKRNIESGVLA--VSRDLYETLLLNFLQGGYFERVMEVIGYM 599 (653)
Q Consensus 548 ~~~~~a~~~~~~~~~~~~~~~~~--p~~~~y~~li~~~~~~g~~~~a~~~~~~m 599 (653)
|+.+++.++++...+ .... |+....|..- -++|..++++.
T Consensus 254 gd~~~a~~~L~kAL~----a~p~~~P~~~lan~~~--------q~eA~~LL~~~ 295 (301)
T 3u64_A 254 NNRAGFDEALDRALA----IDPESVPHNKLLVILS--------QKRARWLKAHV 295 (301)
T ss_dssp TCHHHHHHHHHHHHH----CCGGGCSSCHHHHHHH--------HHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHc----CCCCCCCChhHHHHHH--------HHHHHHHHHHh
Confidence 999999999988763 2344 6655555433 34555555544
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.87 E-value=3.3 Score=32.83 Aligned_cols=90 Identities=10% Similarity=0.047 Sum_probs=62.3
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCC
Q 048743 356 KHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEA---AHDILDDMELAGHPM--DSTTYKSLLTAYYKVKM 430 (653)
Q Consensus 356 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~ 430 (653)
....+..+.+-|.+....+ +++..+--.+.-+++++.+... +..++.++.+.+ .| .....-.|.-++.+.|+
T Consensus 13 ~~~~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhh
Confidence 3344555666666666656 3555555666667777776655 888999887764 23 33344556678999999
Q ss_pred hHHHHHHHHHHHHcCCccCc
Q 048743 431 FREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 431 ~~~a~~~~~~m~~~~~~p~~ 450 (653)
+++|.+.++.+.+ +.|+.
T Consensus 90 Y~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 90 YEKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHH--hCCCC
Confidence 9999999999988 46764
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.10 E-value=2 Score=42.41 Aligned_cols=72 Identities=15% Similarity=0.015 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 048743 347 MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMEL-----AGHPMDSTTYKS 420 (653)
Q Consensus 347 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 420 (653)
...++.++...|++++|...+..+.... |.+...|..+|.+|.+.|+..+|++.|+.+.+ .|+.|+..+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3467778888999999999999988887 77887899999999999999999999988743 588888775443
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.74 E-value=5.3 Score=32.65 Aligned_cols=111 Identities=10% Similarity=0.031 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHcCCCH------HHHHHHHHHHHhcCCCCCHH----HHHHHHH---HHhccCCHHHHHHHHHHHHHHh
Q 048743 498 TIYKLNSSIYFFCKGKMI------GDALKIYRRMQEMKIRPTVE----TFYYLVY---GHSSLEMYRDITILWGDIKRNI 564 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~----t~~~li~---~~~~~~~~~~a~~~~~~~~~~~ 564 (653)
|..+|=..+.-.-+.|+. ++..++|++.... ++|+.. .|..|-- .+...+++++|.++|+.+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 555666666666666766 7778888877663 566531 1111111 123448999999999999754
Q ss_pred hhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048743 565 ESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLMYKSEF 615 (653)
Q Consensus 565 ~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 615 (653)
..++ ...|-...+--.++|+.+.|.+++......+-+| .....+.+
T Consensus 90 -hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~ 135 (161)
T 4h7y_A 90 -CKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIAL 135 (161)
T ss_dssp -CTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHH
T ss_pred -hHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHH
Confidence 3344 7777777777889999999999999999877555 44556666
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.67 E-value=10 Score=30.27 Aligned_cols=83 Identities=8% Similarity=-0.040 Sum_probs=62.9
Q ss_pred cCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCc
Q 048743 49 HGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCS 128 (653)
Q Consensus 49 ~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 128 (653)
++.|++.+-=.+-.++.++.......+++.++.++.+..+. -..+.+-.|..++.|.|+++.|.+..+.+.+. .|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~-~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 45677766555666788888887899999999999876532 23455566677999999999999999999886 6776
Q ss_pred hhHHHH
Q 048743 129 DLLLLV 134 (653)
Q Consensus 129 ~~~~~l 134 (653)
.-...|
T Consensus 112 ~QA~~L 117 (134)
T 3o48_A 112 KQVGAL 117 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.31 E-value=4.1 Score=40.11 Aligned_cols=76 Identities=5% Similarity=-0.117 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh-hhCCCccCHHHHH
Q 048743 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNI-ESGVLAVSRDLYE 577 (653)
Q Consensus 501 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~p~~~~y~ 577 (653)
+...++..+...|++++|+..+...... -+.+...+..+|.++.+.|+..+|.+.|+.+.+.+ ++.|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3456778888999999999998888765 25578899999999999999999999999887654 4568999887644
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.46 E-value=6.4 Score=29.53 Aligned_cols=63 Identities=8% Similarity=0.078 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHH
Q 048743 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLL 581 (653)
Q Consensus 514 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~ 581 (653)
+.-++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+.++.. ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-----~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-----AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----hcCchhhHHHHHH
Confidence 45566666777777778888888888888888888888888888777532 1122345666654
No 241
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=82.08 E-value=7 Score=39.10 Aligned_cols=114 Identities=11% Similarity=0.045 Sum_probs=58.3
Q ss_pred HHHHHHhhhhhhhhcCCccCCCCchhh--HHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH--HHHHHHHHHhcCCh
Q 048743 153 IQLCDVFLHLSAEKSNGAELIKPDTMI--FNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS--IIILAQIHEMNCQR 228 (653)
Q Consensus 153 ~~~~~~~~~~~~a~~~~~~~~~~~~~~--yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~ 228 (653)
+......|+++.++.+++.+..|+... ..+.+...++.|+.+-+..+++ .|..++... -.+.+...+..|..
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~ 93 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAARIGHT 93 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 344445566666666666666555432 2244555667777665555443 454443322 12345555667777
Q ss_pred hhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHH
Q 048743 229 DELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILD 275 (653)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 275 (653)
+-++-+++.-......+.. ..+.+...+..|+.+-+..+++.
T Consensus 94 ~~v~~Ll~~ga~~~~~~~~-----g~t~L~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 94 NMVKLLLENNANPNLATTA-----GHTPLHIAAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHHHHHHTCCTTCCCTT-----CCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCCCCC-----CCcHHHHHHHcCCHHHHHHHHhC
Confidence 7666665542221111111 12233444566777766666543
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.57 E-value=7.8 Score=32.30 Aligned_cols=100 Identities=6% Similarity=0.001 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh-cCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhC------
Q 048743 502 LNSSIYFFCKGKMIGDALKIYRRMQE-MKIRPTV-------ETFYYLVYGHSSLEMYRDITILWGDIKRNIESG------ 567 (653)
Q Consensus 502 y~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~-------~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------ 567 (653)
+-.-++.+...|.++.|+-+.+.+.. .+..|+. .++..+.+++...+++..|...|+...+..+.-
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34455666778888888777766554 2223332 255667778888888888888888765432211
Q ss_pred --------------CCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 048743 568 --------------VLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601 (653)
Q Consensus 568 --------------~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 601 (653)
....+...--.+-.+|...|++++|+.+++....
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 0111122323367789999999999999885543
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.51 E-value=42 Score=36.00 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=73.2
Q ss_pred cCC-HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHHHhc------CCCCCHH------HH-HHHH
Q 048743 477 MDK-SDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKM-IGDALKIYRRMQEM------KIRPTVE------TF-YYLV 541 (653)
Q Consensus 477 ~~~-~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~------g~~p~~~------t~-~~li 541 (653)
.++ .+.|..+|+++....-.-++....++|..+...++ --+|.+++++..+. ...+... .+ ..|+
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL 340 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLL 340 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHH
Confidence 344 58899999999887621122223334443333332 22455555554421 1222211 00 1122
Q ss_pred H----HHhccCCHHHHHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 048743 542 Y----GHSSLEMYRDITILWGDIKRNIESGVLAV-SRDLYETLLLNFLQGGYFERVMEVIGYMK 600 (653)
Q Consensus 542 ~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 600 (653)
. -|...|+++.|+++-+... ...| +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV------~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTST------ELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH------HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHhccCcHHHHHHHHHHHH------hcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 2 3556899999999987775 3344 57899999999999999999999999884
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.80 E-value=17 Score=27.28 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=36.5
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 048743 336 RNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVID 388 (653)
Q Consensus 336 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 388 (653)
-...+.|++.+..+.+.+|.+.+++..|.++|+.++.+- .+...+|..+++
T Consensus 37 ~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 37 VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 345577888888888888888888888888888887765 222334666654
No 245
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=79.27 E-value=0.36 Score=48.04 Aligned_cols=183 Identities=9% Similarity=-0.056 Sum_probs=109.7
Q ss_pred CchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHH
Q 048743 53 ERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLL 132 (653)
Q Consensus 53 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 132 (653)
.+.+|+.+-.+....+. +.+|++-|.+. -|+..|..+|.+..+.|.+++-+..+.-.++..-.|..
T Consensus 53 ~p~VWs~LgkAqL~~~~---v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I---- 118 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGM---VKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV---- 118 (624)
T ss_dssp CCCCSSSHHHHTTTSSS---CTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT----
T ss_pred CccHHHHHHHHHHccCc---hHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc----
Confidence 45678888887766665 67777776442 26778889999999999999999888655544333333
Q ss_pred HHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC----
Q 048743 133 LVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGV---- 208 (653)
Q Consensus 133 ~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~---- 208 (653)
.+.++-++++.+++.+.+++.. .||+.-...+-+-|...|.++.|.-+|..+....-
T Consensus 119 ----------------DteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAst 179 (624)
T 3lvg_A 119 ----------------ETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLAST 179 (624)
T ss_dssp ----------------THHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSS
T ss_pred ----------------HHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHH
Confidence 3355666666666666555443 46776777777888888888888777766543210
Q ss_pred ----------------CccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHH
Q 048743 209 ----------------VADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGEL 272 (653)
Q Consensus 209 ----------------~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 272 (653)
.-+..||.-+-.+|...+.+.-|.-.--.+.-..+. ...|+..|-+.|.+++-+.+
T Consensus 180 LV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade--------L~elv~~YE~~G~f~ELIsL 251 (624)
T 3lvg_A 180 LVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--------LEELINYYQDRGYFEELITM 251 (624)
T ss_dssp SSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC--------CSGGGSSSSTTCCCTTSTTT
T ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH--------HHHHHHHHHhCCCHHHHHHH
Confidence 123445555555555555555554443222222110 12344445555555555554
Q ss_pred HHHh
Q 048743 273 ILDM 276 (653)
Q Consensus 273 ~~~m 276 (653)
++.-
T Consensus 252 lEag 255 (624)
T 3lvg_A 252 LEAA 255 (624)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=79.00 E-value=62 Score=34.70 Aligned_cols=54 Identities=11% Similarity=-0.059 Sum_probs=41.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 048743 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDM 406 (653)
Q Consensus 351 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 406 (653)
.+-+...|+++.|+++-++..... |.+-.+|..|...|.+.|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334556788888888888877766 777777888888888888888888887776
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.84 E-value=24 Score=28.49 Aligned_cols=81 Identities=9% Similarity=-0.029 Sum_probs=60.6
Q ss_pred CCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchh
Q 048743 51 IPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDL 130 (653)
Q Consensus 51 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 130 (653)
.|++.+-=.+-.++.++.......+++.+++++.+..+.. ..+-+-.|.-++.|.|++++|.+..+.+.+. .|+..-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~-~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHH
Confidence 4666655556667888888888999999999998765432 3334445566999999999999999999886 677654
Q ss_pred HHHH
Q 048743 131 LLLV 134 (653)
Q Consensus 131 ~~~l 134 (653)
...|
T Consensus 113 A~~L 116 (144)
T 1y8m_A 113 VGAL 116 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 248
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=78.26 E-value=22 Score=34.10 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF--LEAAHDILDDMELAGHPMDSTTYKSLL 422 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (653)
....+|.-|...|+.++|.+.++++.... .....++..+..++-+.++ .+.+.+++..+...|+-+.......+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~--fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPH--FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTT--CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCc--chHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 56889999999999999999999986432 1123335556666655443 456888888888887655444333333
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.23 E-value=20 Score=28.56 Aligned_cols=63 Identities=8% Similarity=0.078 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHH
Q 048743 514 MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLL 581 (653)
Q Consensus 514 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~ 581 (653)
+.-+..+-++.+....+.|+.....+.+++|.+.+++..|.++|+-++.. ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-----~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-----AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----cCCchhhHHHHHH
Confidence 44456666666667778888888888888888888888888888777532 2223445666653
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.76 E-value=68 Score=32.01 Aligned_cols=168 Identities=14% Similarity=0.121 Sum_probs=100.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----cccHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH--H
Q 048743 347 MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGE----STLCSDVIDALIQLGFLEAAHDILDDMEL----AGHPMDS--T 416 (653)
Q Consensus 347 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~--~ 416 (653)
...|...+-..|++.+|.+++.++...-....+ ...|..-++.|...+++..|..++.+... ....|+. .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 357788899999999999999998754311222 22366778899999999999999988642 2223332 3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-CccCc--hhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHc
Q 048743 417 TYKSLLTAYYKVKMFREAEALLKQMRKSC-LVQNL--SCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE 493 (653)
Q Consensus 417 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 493 (653)
.|...+..+...+++.+|...|.+..+.- ...+. ....+...++..... ..+ ..-..++......
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa----------~~~--~~~~~ll~~~~~~ 287 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLS----------PYG--NLQNDLIHKIQND 287 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS----------SCS--STTHHHHHSHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhC----------CCC--chHHHHHHHHhhc
Confidence 55677777888899999998888886531 11121 111111111111111 111 1112222333332
Q ss_pred cCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHH
Q 048743 494 AALSTIYKLNSSIYFFCKG--KMIGDALKIYRRMQ 526 (653)
Q Consensus 494 ~~~p~~~~y~~li~~~~~~--g~~~~a~~~~~~m~ 526 (653)
...++...|..++.+|... .+++.+.+.|+...
T Consensus 288 ~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 288 NNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred ccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 2235667788888888754 45677766665443
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.94 E-value=61 Score=37.08 Aligned_cols=82 Identities=10% Similarity=0.061 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048743 347 MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES----TLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLL 422 (653)
Q Consensus 347 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (653)
|..++..+-+.+.++.+.++-+...+... +.+. ..|..+.+++...|++++|...+-.+.+... -......|+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 45566666666666666665544333221 1111 1355555666666666666666555554432 234445555
Q ss_pred HHHHHcCCh
Q 048743 423 TAYYKVKMF 431 (653)
Q Consensus 423 ~~~~~~~~~ 431 (653)
..+|..|..
T Consensus 979 ~~lce~~~~ 987 (1139)
T 4fhn_B 979 NQLTKQGKI 987 (1139)
T ss_dssp HHHHHHCCH
T ss_pred HHHHhCCCh
Confidence 555554443
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.05 E-value=38 Score=27.01 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=39.8
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 048743 336 RNGKLLHSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVID 388 (653)
Q Consensus 336 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 388 (653)
-...+.|++.+....+.+|.+.+|+..|.++|+-++.+- .+...+|..+++
T Consensus 80 ~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 80 VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 345577999999999999999999999999999988776 233344776665
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.12 E-value=29 Score=34.51 Aligned_cols=101 Identities=8% Similarity=-0.089 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHH--H
Q 048743 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT--VETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDL--Y 576 (653)
Q Consensus 501 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~--y 576 (653)
++..+...|.+.|++++|.+.|.++...-..+. ...+-.+++.+...+++..+......+..... .+-.|+... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~-~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE-KGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh-cCCCHHHHHHHH
Confidence 456788889999999999999999987433333 45677888999999999999999988865433 333333322 1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC
Q 048743 577 ETLLLNFLQGGYFERVMEVIGYMKKQ 602 (653)
Q Consensus 577 ~~li~~~~~~g~~~~a~~~~~~m~~~ 602 (653)
..-...+...+++..|-+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122345678899998888776543
No 254
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=68.27 E-value=16 Score=36.39 Aligned_cols=107 Identities=11% Similarity=-0.032 Sum_probs=52.3
Q ss_pred hhhhhhhhcCCccCCCCchh--hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH--HHHHHHHHHhcCChhhhHHH
Q 048743 159 FLHLSAEKSNGAELIKPDTM--IFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS--IIILAQIHEMNCQRDELKKF 234 (653)
Q Consensus 159 ~~~~~~a~~~~~~~~~~~~~--~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~ 234 (653)
.|+.+.++.+.+.+..++.. .-.+.+...++.|+.+-+.. +.+.|..|+... -.+.+...+..|..+.+..+
T Consensus 57 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~L 132 (437)
T 1n11_A 57 AGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL----LLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132 (437)
T ss_dssp HTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHH----HHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH----HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Confidence 34444444444444333221 11233445566777664444 444565555332 12345556677888877777
Q ss_pred HHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHH
Q 048743 235 KCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELIL 274 (653)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 274 (653)
++.-......... -.+.+...+..|+.+-+..+++
T Consensus 133 l~~~~~~~~~~~~-----g~t~L~~A~~~g~~~~v~~Ll~ 167 (437)
T 1n11_A 133 LEKEASQACMTKK-----GFTPLHVAAKYGKVRVAELLLE 167 (437)
T ss_dssp HHTTCCSCCCCTT-----SCCHHHHHHHTTCHHHHHHHHH
T ss_pred HhCCCCCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHh
Confidence 6643222111111 1223444466777776655554
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.21 E-value=82 Score=29.79 Aligned_cols=174 Identities=7% Similarity=-0.047 Sum_probs=88.7
Q ss_pred hHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHH----HHHHHcCccCCCchhH
Q 048743 56 VVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMI----LRLMLGRENLPCSDLL 131 (653)
Q Consensus 56 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~ 131 (653)
.|-.+..-+.++++ ..+|++++..- ...+.+.|+...|-++ ++-..+.++.+|....
T Consensus 37 ~~RTi~~Ry~~~k~---y~eAidLL~~G----------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~ 97 (336)
T 3lpz_A 37 ETRLVAARYSKQGN---WAAAVDILASV----------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASR 97 (336)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHhhcC---HHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 34445555556666 67788877553 2233444444333322 3444445566666555
Q ss_pred HHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcc
Q 048743 132 LLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVAD 211 (653)
Q Consensus 132 ~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 211 (653)
..++..+..-....+. ...+++...++..- +.....-|...-..+-..|.+.+++.+|..-|- .|-.+.
T Consensus 98 ~rL~~L~~~~~~~~p~-r~~fi~~ai~WS~~------~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s 166 (336)
T 3lpz_A 98 GKLLGCLRLFQPGEPV-RKRFVKEMIDWSKK------FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKES 166 (336)
T ss_dssp HHHHHHHTTSCTTCHH-HHHHHHHHHHHHHH------HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTH
T ss_pred HHHHHHHHhCCCCCcH-HHHHHHHHHHHHhh------cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCch
Confidence 5555544433322211 11222222222110 012233455566677788999999999887763 244445
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhc
Q 048743 212 AHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMN 277 (653)
Q Consensus 212 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 277 (653)
..+|..++--+...+...+ .+..+-.+ +--|.-.+++..|..+|+...
T Consensus 167 ~~~~a~mL~ew~~~~~~~e-----------------~dlfiaRa-VL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 167 PEVLARMEYEWYKQDESHT-----------------APLYCARA-VLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHHHHHHHHTSCGGG-----------------HHHHHHHH-HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcc-----------------HHHHHHHH-HHHHHHhCCHHHHHHHHHHHH
Confidence 5677655555544433221 12222222 333445678888888877763
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.07 E-value=1.7e+02 Score=33.36 Aligned_cols=147 Identities=11% Similarity=-0.032 Sum_probs=86.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------------
Q 048743 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGH----------------- 411 (653)
Q Consensus 349 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----------------- 411 (653)
.++..+.+.+..+.+.++.... +.+...--.+..+|...|++++|.+.|.+... |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 4566677777777776655443 23333334455677778999999999976421 11
Q ss_pred ------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc--hhhHHHHhhHHHHhhhcccccccccccCCHHHH
Q 048743 412 ------PMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL--SCEMVVSERFSEVADKSASFTDTSSLMDKSDLA 483 (653)
Q Consensus 412 ------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a 483 (653)
..-..-|..++..+-+.+.++.+.++-....+.. .++. ..+.+....+..... .|++++|
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~-~~~~~~~~~~l~~~iFk~~L~-----------l~~ye~A 957 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIAITHETLKTACA-----------AGKFDAA 957 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC-CSCCHHHHHHHHHHHHHHHHH-----------HCCSGGG
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cCCChhhHHHHHHHHHHHHHh-----------hCCHHHH
Confidence 1112457788888888888888888776665532 2222 111122223333333 6777777
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHH
Q 048743 484 ESLIQEMREEAALSTIYKLNSSIYFFCKGKMIG 516 (653)
Q Consensus 484 ~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~ 516 (653)
...+-.+.+.... ......||..+|..|..+
T Consensus 958 y~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 958 HVALMVLSTTPLK--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp GHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred HHHHHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence 7777766654432 334566666666555443
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=66.95 E-value=1.3e+02 Score=31.52 Aligned_cols=227 Identities=10% Similarity=0.010 Sum_probs=120.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHH--HHHHHHHHHHCCC-----------C
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEA--AHDILDDMELAGH-----------P 412 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~--a~~~~~~m~~~g~-----------~ 412 (653)
.-.....+....|+-.+|....+.+=..+ ......+..|+..+.+.|.+.. ...=++.+...|- +
T Consensus 104 ~~c~~~~A~~~~G~~~~a~~~~~~lW~~~--~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~ 181 (618)
T 1qsa_A 104 AQCNYYYAKWNTGQSEEAWQGAKELWLTG--KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMP 181 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHSCS--SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 33456667777888777877777776666 3333447888888887775432 3333333333331 1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHH
Q 048743 413 MDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMRE 492 (653)
Q Consensus 413 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 492 (653)
++...+.....+.. .++..+..... . ..|+....-+....+..+. ..+.+.|...|....+
T Consensus 182 ~~~~~~a~~~~al~--~~p~~~~~~~~---~--~~~~~~~~~~~~~~~~rla------------r~d~~~A~~~~~~~~~ 242 (618)
T 1qsa_A 182 ADYQTIASAIISLA--NNPNTVLTFAR---T--TGATDFTRQMAAVAFASVA------------RQDAENARLMIPSLAQ 242 (618)
T ss_dssp GGGHHHHHHHHHHH--HCGGGHHHHHH---H--SCCCHHHHHHHHHHHHHHH------------HHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hChHhHHHHHh---c--cCCChhhHHHHHHHHHHHH------------hcCHHHHHHHHHhhhh
Confidence 12111111111111 11111111110 0 1222211112222233332 2477899999988875
Q ss_pred ccCCCCHHH----HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCC
Q 048743 493 EAALSTIYK----LNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGV 568 (653)
Q Consensus 493 ~~~~p~~~~----y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 568 (653)
.... +... +..+...+...+...++...+...... .++.......+....+.|+++.|...|+.|.. .
T Consensus 243 ~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~-----~ 314 (618)
T 1qsa_A 243 AQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPM-----E 314 (618)
T ss_dssp HTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT-----T
T ss_pred ccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccc-----c
Confidence 4422 2222 333333334455356777777765543 24444444555555677999999999977641 1
Q ss_pred CccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 048743 569 LAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601 (653)
Q Consensus 569 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 601 (653)
......-.--+-+++...|+.++|..+|..+-+
T Consensus 315 ~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 315 AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 112344444566788889999999999998863
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.03 E-value=11 Score=34.30 Aligned_cols=56 Identities=21% Similarity=0.125 Sum_probs=42.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048743 352 NGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELA 409 (653)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 409 (653)
....+.|++++|+.....-.+.. |.|...-..|+..+|-.|++++|.+-++-..+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34556788888888877777776 777777777888888888888888777776553
No 259
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=65.75 E-value=25 Score=33.40 Aligned_cols=52 Identities=12% Similarity=-0.001 Sum_probs=27.1
Q ss_pred HHHhhhhhhhhcCCccCCCCchh----hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccH
Q 048743 156 CDVFLHLSAEKSNGAELIKPDTM----IFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA 212 (653)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~----~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 212 (653)
....|+++.++.+++.|..+|.. -++.| ...++.|+.+ +.+.+.+.|..|+.
T Consensus 32 Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpL-h~A~~~g~~~----iv~~Ll~~ga~~~~ 87 (337)
T 4g8k_A 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL-HNAVQMSRED----IVELLLRHGADPVL 87 (337)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH-HHHHHTTCHH----HHHHHHHTTCCTTC
T ss_pred HHHcCCHHHHHHHHHCCCCCCccCCCCCcCHH-HHHHHcCCHH----HHHHHHHcCCchhh
Confidence 33445666666666666655432 12333 3445566655 34444556655543
No 260
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.53 E-value=7 Score=36.04 Aligned_cols=94 Identities=15% Similarity=0.051 Sum_probs=46.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHc
Q 048743 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTT--YKSLLTAYYKV 428 (653)
Q Consensus 351 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~ 428 (653)
+...+..|+.+-+..+++.....- -..+..-.+.+.. .+..++.....++++.+.+.|..++... -.+.+...++.
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 444556777766655554321111 1122222344433 4456665555677777778887665432 12334444566
Q ss_pred CChHHHHHHHHHHHHcCCccC
Q 048743 429 KMFREAEALLKQMRKSCLVQN 449 (653)
Q Consensus 429 ~~~~~a~~~~~~m~~~~~~p~ 449 (653)
|+.+-+..+++. .|..++
T Consensus 230 ~~~~~v~~Ll~~---~g~~~~ 247 (285)
T 1wdy_A 230 KHLGLVQRLLEQ---EHIEIN 247 (285)
T ss_dssp TCHHHHHHHHHS---SSCCTT
T ss_pred CCHHHHHHHHhc---cCCCcc
Confidence 776654444331 455444
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.98 E-value=31 Score=34.35 Aligned_cols=97 Identities=8% Similarity=0.088 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHH--HHHHHHHHHHhcCChhhhHHHHHHhhhc----CCCcccchhH
Q 048743 178 MIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAH--SIIILAQIHEMNCQRDELKKFKCYIDQL----STPFAHHYQQ 251 (653)
Q Consensus 178 ~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~ 251 (653)
.+...+...|.+.|+++.|.+.|.++...-..+... .+..++..+...+++..+......+... +++.......
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 366778899999999999999999999864444433 3677889999999999999888887654 2222222223
Q ss_pred HHHHHHHhhhccCCHHHHHHHHHHh
Q 048743 252 FYESLLSLHFKFDDIDAAGELILDM 276 (653)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~m 276 (653)
.|..++. ...+++..|...|-+.
T Consensus 212 ~~~gl~~--l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 212 TYYGIHC--LAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHGG--GGTSCHHHHHHHHHHH
T ss_pred HHHHHHH--HHhChHHHHHHHHHHH
Confidence 4444443 4568899999988776
No 262
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=64.20 E-value=78 Score=29.61 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF--LEAAHDILDDMELAGHPMDST 416 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ 416 (653)
....++.-|...|+.++|.+.++++.... .....++..+..++-+.++ .+.+..++..+.+.|+-+...
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~--f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPH--FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGG--GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCc--chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 45688899999999999999999986432 1122335555556655433 456778888888776654443
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=61.02 E-value=69 Score=26.66 Aligned_cols=105 Identities=15% Similarity=0.077 Sum_probs=65.2
Q ss_pred cCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc-------ccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048743 337 NGKLLHSNRA--MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGES-------TLCSDVIDALIQLGFLEAAHDILDDME 407 (653)
Q Consensus 337 ~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~ 407 (653)
..|+.|-... +-.-+..+...|.++.|+-+...+.......++. .++..+.+++...|++..|...|++..
T Consensus 11 ~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 11 SSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp ----------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3456665543 4566788889999999998887755433222332 136777889999999999999999853
Q ss_pred HC--C----------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 048743 408 LA--G----------------------HPMDSTTYKSLLTAYYKVKMFREAEALLKQM 441 (653)
Q Consensus 408 ~~--g----------------------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 441 (653)
+. . ..++...---+-.+|.+.+++++|+.+++.+
T Consensus 91 q~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 91 QQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 21 0 0011122233667889999999999998655
No 264
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=60.88 E-value=60 Score=25.69 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF--LEAAHDILDDMELAGHPMDST 416 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ 416 (653)
....++.-|...|+.++|.+.++++.... .....++..+..++-+.++ .+.+..++..+...|+-+...
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~--f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH--FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG--GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 35688999999999999999999986432 1122335555666665543 467888888888877654433
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=60.84 E-value=1.3e+02 Score=29.38 Aligned_cols=94 Identities=9% Similarity=0.013 Sum_probs=63.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHH
Q 048743 504 SSIYFFCKGKMIGDALKIYRRMQEMKIRPT-----VETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYET 578 (653)
Q Consensus 504 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~ 578 (653)
-++..|...|++.+|++++.++.+.=-+.| ...|..-++.|...+++..+..++....... + .+.+++.+-..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~-~-ai~~~p~i~a~ 181 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA-N-AIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-H-HSCCCHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh-c-cCCCCHHHHHH
Confidence 578888999999999999999886311112 2346666778889999999999998875442 2 22244433322
Q ss_pred H----HHHHH-hCCCHHHHHHHHHHH
Q 048743 579 L----LLNFL-QGGYFERVMEVIGYM 599 (653)
Q Consensus 579 l----i~~~~-~~g~~~~a~~~~~~m 599 (653)
+ -..+. ..++|+.|...|-+.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 1 22245 789999998877655
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=60.21 E-value=1.1e+02 Score=28.58 Aligned_cols=46 Identities=11% Similarity=-0.131 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhC
Q 048743 533 TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQG 586 (653)
Q Consensus 533 ~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~ 586 (653)
+......+-..|.+.+++.+|...|- .+-.-|...+..++.-+...
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i--------~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM--------LGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH--------TSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH--------hCCCccHHHHHHHHHHHHHh
Confidence 55566677777888888888887761 12222345555555554444
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=58.40 E-value=23 Score=32.40 Aligned_cols=88 Identities=8% Similarity=0.051 Sum_probs=41.8
Q ss_pred HHhcCChHHHHHHHHHHHhcCCC--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHc
Q 048743 354 YKKHGKNSELSWLLLSIKKEHHS--FGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST---TYKSLLTAYYKV 428 (653)
Q Consensus 354 ~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~ 428 (653)
.+..++.....++++.+.+.|.. ..+.. -.+.+...++.|+.+-+..+++. .|..++.. -.+. +...++.
T Consensus 189 a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~-l~~A~~~ 263 (285)
T 1wdy_A 189 ALLSSDDSDVEAITHLLLDHGADVNVRGER-GKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTA-LLLAVEL 263 (285)
T ss_dssp HHHCSCTTTHHHHHHHHHHTTCCSSCCCTT-SCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHccccchHHHHHHHHHHcCCCCCCcCCC-CCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcH-HHHHHHc
Confidence 33455544445555555555521 11222 22344555667877665555442 45444322 1222 3333455
Q ss_pred CChHHHHHHHHHHHHcCCccCc
Q 048743 429 KMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 429 ~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
|..+ +.+.+.+.|..|+.
T Consensus 264 ~~~~----i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 264 KLKK----IAELLCKRGASTDC 281 (285)
T ss_dssp TCHH----HHHHHHHHSSCSCC
T ss_pred CcHH----HHHHHHHcCCCCCc
Confidence 6554 44555566776653
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=58.02 E-value=1.3e+02 Score=28.51 Aligned_cols=23 Identities=30% Similarity=0.199 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 048743 383 CSDVIDALIQLGFLEAAHDILDD 405 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~ 405 (653)
|.++..-|.+.+++++|.+++..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH
Confidence 44445555556666666555433
No 269
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=55.93 E-value=25 Score=31.04 Aligned_cols=76 Identities=7% Similarity=-0.150 Sum_probs=36.0
Q ss_pred HhhhhhhhhcCCccCCCCchhh--HHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH---HHHHHHHHHhcCChhhhH
Q 048743 158 VFLHLSAEKSNGAELIKPDTMI--FNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS---IIILAQIHEMNCQRDELK 232 (653)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~~--yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~a~ 232 (653)
..|+++..+.+++.+..++... -.+.+...++.|+.+-+.. +.+.|..++... -...+...+..|..+-++
T Consensus 18 ~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~ 93 (240)
T 3eu9_A 18 QYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY----YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV 93 (240)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHH
T ss_pred HcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHH----HHHcCCcchhhcCCcCCChhHHHHHcCCHHHHH
Confidence 3345555555555554433321 2234555666777654444 344444333221 123444555567766655
Q ss_pred HHHHH
Q 048743 233 KFKCY 237 (653)
Q Consensus 233 ~~~~~ 237 (653)
.+++.
T Consensus 94 ~Ll~~ 98 (240)
T 3eu9_A 94 QLMKY 98 (240)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 55543
No 270
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.10 E-value=70 Score=28.10 Aligned_cols=88 Identities=13% Similarity=0.031 Sum_probs=50.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCccHHH--HHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhh
Q 048743 184 LHACVRFGSSLKGQHIMELMSQTGVVADAHS--IIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHF 261 (653)
Q Consensus 184 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 261 (653)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-++.+++.-......+.. -.+.+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-----g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRH-----GQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-----SCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCC-----CCCHHHHHH
Confidence 4556778899888888888777776655432 123455566677776666555432111111111 123344445
Q ss_pred ccCCHHHHHHHHHHh
Q 048743 262 KFDDIDAAGELILDM 276 (653)
Q Consensus 262 ~~g~~~~A~~~~~~m 276 (653)
..|+.+-+..+++..
T Consensus 88 ~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 88 EHRSPTCLRALLDSA 102 (241)
T ss_dssp HTTCHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHcC
Confidence 678877776666554
No 271
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=53.25 E-value=57 Score=26.75 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHH
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF--LEAAHDILDDMELAGHPMDST 416 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ 416 (653)
..+.+|.-|...|+.++|.+.++++.... .....++..+..++-+.++ .+.+..++..+...|+-+...
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~--f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH--FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG--GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45688999999999999999999986432 1222335556666665433 456888888888877654433
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.15 E-value=1.2e+02 Score=26.25 Aligned_cols=57 Identities=11% Similarity=-0.067 Sum_probs=43.2
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048743 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413 (653)
Q Consensus 357 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 413 (653)
+++..++..+|..|...++-..-...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444668888888888888555555558888888888888888888888887776666
No 273
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=49.98 E-value=32 Score=30.39 Aligned_cols=82 Identities=11% Similarity=0.007 Sum_probs=41.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHHcCCccCch----hhHHHHhhH
Q 048743 387 IDALIQLGFLEAAHDILDDMELAGHPMDSTTY--KSLLTAYYKVKMFREAEALLKQMRKSCLVQNLS----CEMVVSERF 460 (653)
Q Consensus 387 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~~~~~l 460 (653)
+...+..|+.+ +++.+.+.|..++.... .+.+...++.|+.+-+ +.+.+.|..++.. .+.+.
T Consensus 148 L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~---- 215 (237)
T 3b7b_A 148 LHWAAFSGCVD----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQ---- 215 (237)
T ss_dssp HHHHHHHCCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHH----
T ss_pred HHHHHHCCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHH----
Confidence 34445567665 44445566665543211 1234444566766544 4444556555431 11111
Q ss_pred HHHhhhcccccccccccCCHHHHHHHHHHHHH
Q 048743 461 SEVADKSASFTDTSSLMDKSDLAESLIQEMRE 492 (653)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 492 (653)
.-...|+...+.++.+.+.+
T Consensus 216 ------------~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 216 ------------CASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp ------------HSCTTCHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHhhc
Confidence 12346777777777777765
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=47.88 E-value=71 Score=23.93 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=59.4
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 048743 356 KHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAE 435 (653)
Q Consensus 356 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 435 (653)
-....++|.-+-+.+...+ . ...+--+=+..+...|++++|..+.+.+ +.||...|.+|- -.+.|..+++.
T Consensus 19 G~H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le 89 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALE 89 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHH
T ss_pred cchHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHH
Confidence 3456788888888888776 2 3332334456677899999999887654 479999988765 35778888888
Q ss_pred HHHHHHHHcC
Q 048743 436 ALLKQMRKSC 445 (653)
Q Consensus 436 ~~~~~m~~~~ 445 (653)
.-+..+...|
T Consensus 90 ~rL~~la~sg 99 (116)
T 2p58_C 90 SRLNRLARSQ 99 (116)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHhCC
Confidence 8887777665
No 275
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=45.55 E-value=88 Score=23.44 Aligned_cols=30 Identities=3% Similarity=-0.144 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 048743 497 STIYKLNSSIYFFCKGKMIGDALKIYRRMQEM 528 (653)
Q Consensus 497 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 528 (653)
||...|-+|-. .+.|..+++...+.++-..
T Consensus 69 pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 69 PDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp GGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 44444444433 3445555555544444433
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=44.94 E-value=73 Score=27.50 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 048743 478 DKSDLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT 533 (653)
Q Consensus 478 ~~~~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 533 (653)
+....+..+|..|...|+-- -...|-.....+...|++.+|.++|+.-++.+-+|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44668888888888877755 555677777888888888888888888888777774
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=43.69 E-value=68 Score=23.97 Aligned_cols=81 Identities=10% Similarity=-0.038 Sum_probs=59.8
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 048743 357 HGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEA 436 (653)
Q Consensus 357 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 436 (653)
....++|.-+-+.+...+ . ...+--+=+..+...|++++|..+.+.+ +.||...|.+|- -.+.|..+++..
T Consensus 19 ~H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~ 89 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDR 89 (115)
T ss_dssp TTCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHH
Confidence 456788888888888776 2 3332334456677899999999887553 479999988764 457899999988
Q ss_pred HHHHHHHcCC
Q 048743 437 LLKQMRKSCL 446 (653)
Q Consensus 437 ~~~~m~~~~~ 446 (653)
-+..+...|-
T Consensus 90 rL~~la~sg~ 99 (115)
T 2uwj_G 90 RLAGLGGSSD 99 (115)
T ss_dssp HHHHHHTCSS
T ss_pred HHHHHHhCCC
Confidence 8888877663
No 278
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.30 E-value=43 Score=30.84 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=9.4
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 048743 386 VIDALIQLGFLEAAHDILDD 405 (653)
Q Consensus 386 li~~~~~~g~~~~a~~~~~~ 405 (653)
.+...+..|+.+-+.-+++.
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHc
Confidence 33344455555554444443
No 279
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=42.73 E-value=1.7e+02 Score=27.66 Aligned_cols=53 Identities=9% Similarity=-0.085 Sum_probs=28.1
Q ss_pred hhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccH
Q 048743 160 LHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADA 212 (653)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 212 (653)
|+.+.++.+++.+..++...-.+.+...+..|+.+-+..+++.-...|..|+.
T Consensus 64 g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 116 (364)
T 3ljn_A 64 GCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPES 116 (364)
T ss_dssp CCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHH
Confidence 34444444444444333322223344456678877777777766555655544
No 280
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=41.12 E-value=22 Score=23.62 Aligned_cols=56 Identities=13% Similarity=0.049 Sum_probs=35.0
Q ss_pred cCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCc
Q 048743 67 SAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCS 128 (653)
Q Consensus 67 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 128 (653)
+|.+...++.++.+.+| .|. .|..+...++ -...|+++.|+..|-+|...+..|+.
T Consensus 3 ~~~~~~~ee~l~~L~em---FP~-ld~~~I~~vL--~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 3 SGSSGCSEEDLKAIQDM---FPN-MDQEVIRSVL--EAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp SCSSSSCHHHHHHHHHH---CSS-SCHHHHHHHH--TTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred CCCCCCCHHHHHHHHHH---CCC-CCHHHHHHHH--HHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 44444466777777776 222 2343333322 24578889999999888888777764
No 281
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.90 E-value=30 Score=31.18 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=27.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHH--HcCChHHHHHHHHHH
Q 048743 389 ALIQLGFLEAAHDILDDMELAGHPMDSTT-------YKSLLTAYY--KVKMFREAEALLKQM 441 (653)
Q Consensus 389 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-------~~~li~~~~--~~~~~~~a~~~~~~m 441 (653)
..++.|+.+....+++.+.+.|..++... .+.|..|.. +.|+.+-+..+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34455666666666666655555444332 233333332 446666555555544
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=40.74 E-value=72 Score=26.12 Aligned_cols=51 Identities=16% Similarity=-0.028 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048743 363 LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413 (653)
Q Consensus 363 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 413 (653)
+..+|..|...++-..-...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555544323333334444555555555555555555544444333
No 283
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=40.52 E-value=3.5e+02 Score=28.46 Aligned_cols=81 Identities=12% Similarity=-0.018 Sum_probs=46.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhh
Q 048743 182 LVLHACVRFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHF 261 (653)
Q Consensus 182 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 261 (653)
....++.-.|+++.|.+.+-.. -..|.+.+.+.+..++-.+- ...++..-. +.+.+. +..||..|.
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~~--~~~~lN-----~arLI~~Yt 364 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTKK--PKRDIR-----FANILANYT 364 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC----------------------C-----HHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccCC--Cccccc-----HHHHHHHHH
Confidence 3466777799999999987754 25566666666666543332 111111100 112222 778888886
Q ss_pred c---cCCHHHHHHHHHHh
Q 048743 262 K---FDDIDAAGELILDM 276 (653)
Q Consensus 262 ~---~g~~~~A~~~~~~m 276 (653)
+ ..|+.+|.++|--+
T Consensus 365 ~~F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 365 KSFRYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTTTTCHHHHHHHHHGG
T ss_pred HHhhcCCHHHHHHHHHHH
Confidence 5 58899999988766
No 284
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=40.34 E-value=2.3e+02 Score=26.41 Aligned_cols=173 Identities=11% Similarity=-0.022 Sum_probs=85.7
Q ss_pred hHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHH----HHHHHHcCccCCCchhH
Q 048743 56 VVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASM----ILRLMLGRENLPCSDLL 131 (653)
Q Consensus 56 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~~~ 131 (653)
.|..+..-+.++++ ..+|++++..- ...+.+.|+...|-+ +++-..+.++.++....
T Consensus 35 ~~Rtl~~Ry~~~~~---~~eAidlL~~g----------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~ 95 (312)
T 2wpv_A 35 TLRTIANRYVRSKS---YEHAIELISQG----------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISV 95 (312)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred HHHHHHHHHHHhcC---HHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 34455555666666 67788877653 223344444433333 33444445556665555
Q ss_pred HHHHHHHhhcccccccchHHHHHHHHHhh-hhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc
Q 048743 132 LLVFVHMVKTEIGTCLASNFLIQLCDVFL-HLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVA 210 (653)
Q Consensus 132 ~~li~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p 210 (653)
..++..+..-....+. ...++....++. ... ....-+......+-..|.+.|++.+|..-|- .|-.-
T Consensus 96 ~rl~~l~~~~p~~~~~-r~~fi~~ai~WS~~~g-------~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~ 163 (312)
T 2wpv_A 96 ARLVRLIAELDPSEPN-LKDVITGMNNWSIKFS-------EYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHD 163 (312)
T ss_dssp HHHHHHHTTCCTTCTT-HHHHHHHHHHHHHHTS-------SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHH
T ss_pred HHHHHHHHHCCCCCch-HHHHHHHHHHHHhhcC-------CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCc
Confidence 5555433332222111 112222222211 110 1123466677778888899999988887664 12111
Q ss_pred cHHHHHHHHHHHHhc---CChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhc
Q 048743 211 DAHSIIILAQIHEMN---CQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMN 277 (653)
Q Consensus 211 ~~~t~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 277 (653)
|...+..++.-+... |...++- ..+-.++ --|.-.|++..|..+|+...
T Consensus 164 s~~~~a~~l~~w~~~~~~~~~~e~d-----------------lf~~RaV-L~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 164 SMIKYVDLLWDWLCQVDDIEDSTVA-----------------EFFSRLV-FNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHH-----------------HHHHHHH-HHHHHTTBHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCCcchHH-----------------HHHHHHH-HHHHHhcCHHHHHHHHHHHH
Confidence 345555555544443 3332221 1112222 23344688889988888773
No 285
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=39.68 E-value=2.7e+02 Score=27.00 Aligned_cols=248 Identities=14% Similarity=0.129 Sum_probs=136.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcc---cHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHH---
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGEST---LCSDVIDALIQL-GFLEAAHDILDDMELAGHPMDSTTY--- 418 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~--- 418 (653)
....|...|.+.|+.++..+++.....--...+-.. ....+++.+... +..+.-.++..+..+..- -+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 556888999999999999999888754332222222 256677777664 445555555555443210 012233
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHc--
Q 048743 419 ---KSLLTAYYKVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREE-- 493 (653)
Q Consensus 419 ---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~-- 493 (653)
..+...|...|++.+|..++..+.+.--..|.. ..++-.++.. .++|...+++.++...+......
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~-~~llev~lle--------~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDK-NLLVEVQLLE--------SKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT-HHHHHHHHHH--------HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc-hhHHHHHHHH--------HHHHHHhccHHHHHHHHHHHHhhhc
Confidence 257889999999999999999998753333432 2222222222 13466788999999888766532
Q ss_pred cCCCCHHHHHHHHHH-----HH-cCCCHHHHHHHHHHHHhcCCCCCHHHHHH----HHHHHhccCCHHHHHHHHH-HHHH
Q 048743 494 AALSTIYKLNSSIYF-----FC-KGKMIGDALKIYRRMQEMKIRPTVETFYY----LVYGHSSLEMYRDITILWG-DIKR 562 (653)
Q Consensus 494 ~~~p~~~~y~~li~~-----~~-~~g~~~~a~~~~~~m~~~g~~p~~~t~~~----li~~~~~~~~~~~a~~~~~-~~~~ 562 (653)
.+.|++.+ -+.|+. +. ..+++.+|...|-+..+.=-..+...+.. ++-+..-.++..+...++. ...
T Consensus 171 ai~~~p~i-~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~- 248 (394)
T 3txn_A 171 AIYCPPKV-QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLA- 248 (394)
T ss_dssp HSCCCHHH-HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHH-
T ss_pred cCCCCHHH-HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccc-
Confidence 22133322 233332 34 68899999888877542100111111111 1111122233333333221 111
Q ss_pred HhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHh
Q 048743 563 NIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKKQNMYVDKLM 610 (653)
Q Consensus 563 ~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 610 (653)
... ..|....+..++.+| +.+++.+..++++.... .+..|...
T Consensus 249 --~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l 291 (394)
T 3txn_A 249 --ITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIV 291 (394)
T ss_dssp --HTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHH
T ss_pred --ccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHH
Confidence 112 346666666666654 46678777777776643 35566653
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.44 E-value=27 Score=30.87 Aligned_cols=87 Identities=9% Similarity=-0.070 Sum_probs=40.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHH
Q 048743 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST----TYKSLLTAYY 426 (653)
Q Consensus 351 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~ 426 (653)
+...++.|+.+....+++.-..- ...+.. -...+...++.|+.+-+..++ +.|..++.. -.+. +...+
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~--~~~~~~-g~t~L~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~~~~t~-L~~A~ 84 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDV--RQPDKE-NVTLLHWAAINNRIDLVKYYI----SKGAIVDQLGGDLNSTP-LHWAT 84 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT--TCCCTT-SCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCBTTTTBCH-HHHHH
T ss_pred HHHHHHcCChHHHHHHHHcCCCc--CCCCCC-CCCHHHHHHHhCCHHHHHHHH----HcCCcchhhcCCcCCCh-hHHHH
Confidence 34456678877666665532111 112222 223455566777776554444 444333211 1223 33344
Q ss_pred HcCChHHHHHHHHHHHHcCCccC
Q 048743 427 KVKMFREAEALLKQMRKSCLVQN 449 (653)
Q Consensus 427 ~~~~~~~a~~~~~~m~~~~~~p~ 449 (653)
..|+.+-+ +.+.+.|..++
T Consensus 85 ~~~~~~~v----~~Ll~~g~~~~ 103 (240)
T 3eu9_A 85 RQGHLSMV----VQLMKYGADPS 103 (240)
T ss_dssp HHTCHHHH----HHHHHTTCCTT
T ss_pred HcCCHHHH----HHHHHcCCCCc
Confidence 55665543 34445555554
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=38.83 E-value=83 Score=25.73 Aligned_cols=51 Identities=6% Similarity=-0.047 Sum_probs=35.5
Q ss_pred HHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 048743 483 AESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT 533 (653)
Q Consensus 483 a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 533 (653)
+..+|..|...|+-- -...|......+...|++.+|.++|+.-++.+-+|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 677777777766644 445567777777777777777777777777666663
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.70 E-value=1.7e+02 Score=23.93 Aligned_cols=59 Identities=8% Similarity=-0.004 Sum_probs=35.8
Q ss_pred ccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHhcCCCCC
Q 048743 474 SSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKM--IGDALKIYRRMQEMKIRPT 533 (653)
Q Consensus 474 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~ 533 (653)
|...|+.++|.+.++++...... ...++.++..++-+.++ .+.+..++..+...|+-+.
T Consensus 19 Y~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 19 YLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 33478888888888887643221 34455566666665432 4567777777776654433
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.63 E-value=2e+02 Score=25.53 Aligned_cols=92 Identities=16% Similarity=0.063 Sum_probs=61.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC-CCC----CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048743 349 KLINGYKKHGKNSELSWLLLSIKKEHH-SFG----ESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLT 423 (653)
Q Consensus 349 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (653)
--++.+....++++|..++++.++.-. .+. ....-...+..-.....-.-+..+.+++ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 557888899999999999988765321 111 1122333444444444444556666666 33 456777788889
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 048743 424 AYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 424 ~~~~~~~~~~a~~~~~~m~~ 443 (653)
.+.+.|+.++|.++|=+.+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 99999999999999866654
No 290
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=37.52 E-value=1.3e+02 Score=25.19 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=27.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 048743 352 NGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDS 415 (653)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 415 (653)
...+..|+.+-+..+++.-...- -..+..-.+.|..+.........-.++++.+.+.|..++.
T Consensus 111 ~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 111 IPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 33445666655555544321111 1222222444444433322233335556666666766553
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=37.29 E-value=1e+02 Score=25.63 Aligned_cols=52 Identities=10% Similarity=-0.054 Sum_probs=35.1
Q ss_pred HHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH
Q 048743 483 AESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534 (653)
Q Consensus 483 a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 534 (653)
+..+|..|...|+-- -...|-.....+...|++.+|.++|+.-++.+-+|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 556777777766644 4455666666677777777777777777776666653
No 292
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.52 E-value=25 Score=31.19 Aligned_cols=152 Identities=7% Similarity=-0.117 Sum_probs=71.6
Q ss_pred HHHHHhcCCCchHHHHHHHHHcCccCCCchh---HHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCc
Q 048743 100 SLSLARAQMPVPASMILRLMLGRENLPCSDL---LLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPD 176 (653)
Q Consensus 100 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 176 (653)
+...++.|+.+.+..+++.+.+.|..++... .+.+ ......|+.+.++.+++.+..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L-------------------~~A~~~~~~~~v~~Ll~~g~~~~ 73 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL-------------------HLAVITTLPSVVRLLVTAGASPM 73 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHH-------------------HHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHH-------------------HHHHHcCCHHHHHHHHHcCCCcc
Confidence 4556777888777777777766665554331 1112 12222234444444444444433
Q ss_pred hhh--HHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH--HHHHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHH
Q 048743 177 TMI--FNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS--IIILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQF 252 (653)
Q Consensus 177 ~~~--yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (653)
... -.+.+...+..|+.+-+..+++.....++.++... -...+...+..|..+.++.+++.-......+. . .
T Consensus 74 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~---~-~ 149 (241)
T 1k1a_A 74 ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI---K-S 149 (241)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---T-T
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc---c-C
Confidence 321 12334445567777766666554432222222211 11334445566776666655554222111110 0 1
Q ss_pred HHHHHHhhhccCCHHHHHHHHH
Q 048743 253 YESLLSLHFKFDDIDAAGELIL 274 (653)
Q Consensus 253 ~~~li~~~~~~g~~~~A~~~~~ 274 (653)
..+.+...+..|+.+-+..+++
T Consensus 150 g~t~L~~A~~~~~~~~v~~Ll~ 171 (241)
T 1k1a_A 150 GRSPLIHAVENNSLSMVQLLLQ 171 (241)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHH
Confidence 1233444456777776655554
No 293
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.72 E-value=84 Score=26.56 Aligned_cols=81 Identities=6% Similarity=-0.053 Sum_probs=39.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHH
Q 048743 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDST---TYKSLLTAYYK 427 (653)
Q Consensus 351 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~ 427 (653)
+...+..|+.+.+..++..-...- -..+..-++.| ...++.|+.+-+ +.+.+.|..++.. ..+.+ ...+.
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L-~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l-~~A~~ 81 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPL-NIAVHNNDIEIA----KALIDRGADINLQNSISDSPY-LYAGA 81 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCT-TCCCTTSCCHH-HHHHHHTCHHHH----HHHHHTTCCTTCCCTTSCCHH-HHHHH
T ss_pred HHHHHHhccHHHHHHHHHcCCCCC-CCCCCCCCCHH-HHHHHcCCHHHH----HHHHHcCCCCCCCCCCCCCHH-HHHHH
Confidence 444556788877777765432111 11222223344 444566775544 4444556555432 22333 33455
Q ss_pred cCChHHHHHHH
Q 048743 428 VKMFREAEALL 438 (653)
Q Consensus 428 ~~~~~~a~~~~ 438 (653)
.|+.+-+..++
T Consensus 82 ~~~~~~~~~Ll 92 (201)
T 3hra_A 82 QGRTEILAYML 92 (201)
T ss_dssp TTCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 67666554444
No 294
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=35.04 E-value=55 Score=28.79 Aligned_cols=54 Identities=6% Similarity=-0.087 Sum_probs=29.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHH
Q 048743 386 VIDALIQLGFLEAAHDILDDMELAGHPMDSTT--YKSLLTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 386 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~ 443 (653)
.+...++.|+.+-+. .+.+.|..++... -.+.+......|+.+.++++.+.+.+
T Consensus 180 ~L~~A~~~~~~~~v~----~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 180 PLHIAARENRYDCVV----LFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHHHHTTCHHHHH----HHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHhHHH----HHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455667765443 3445565544321 11233444566777777777777765
No 295
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=34.70 E-value=2.6e+02 Score=25.37 Aligned_cols=60 Identities=23% Similarity=0.237 Sum_probs=48.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 048743 388 DALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKMFREAEALLKQMRKSCLVQNL 450 (653)
Q Consensus 388 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 450 (653)
..+.+.|+++.|+.....-++.. +-|...=..++..+|-.|+++.|.+-++...+ +.|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchh
Confidence 34567899999999888887764 44777778899999999999999999988877 45654
No 296
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=34.11 E-value=56 Score=21.66 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCcccHHHHHHHH-HHcC
Q 048743 360 NSELSWLLLSIKKEHHSFGESTLCSDVIDAL-IQLG 394 (653)
Q Consensus 360 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~-~~~g 394 (653)
.++|.+.|.+|.+...+.++.+ |...|+.. ++-.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~ws-weqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWS-FSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCC-HHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcCCCCCCc-HHHHHHHhccCCC
Confidence 3678888888888776666555 88888888 5543
No 297
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=33.87 E-value=3.1e+02 Score=25.91 Aligned_cols=99 Identities=10% Similarity=-0.108 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHH--HHHH
Q 048743 21 VLLRKLESASKNHQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLD--LLAK 98 (653)
Q Consensus 21 ~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--t~~~ 98 (653)
-...++.-|...|++++|.+.++++..-. +....+...+..++-+.. ..-+.+..++..+.+.+-..++.. -+..
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~-~~~~~v~~~i~~~le~~~--~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~ 89 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPS-LLFIFVRHGVESTLERSA--IAREHMGQLLHQLLCAGHLSTAQYYQGLYE 89 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGG-GHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 35567788888999999999999976411 112224444444443322 224566677777755432222211 1333
Q ss_pred HHHHHHh-cCCCchHHHHHHHHHcC
Q 048743 99 LSLSLAR-AQMPVPASMILRLMLGR 122 (653)
Q Consensus 99 li~~~~~-~g~~~~a~~~~~~m~~~ 122 (653)
++..+-. .=++..|...+.++...
T Consensus 90 ~~~~l~Dl~lDiP~a~~~La~~v~~ 114 (339)
T 1ug3_A 90 ILELAEDMEIDIPHVWLYLAELVTP 114 (339)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHGG
T ss_pred HHhhChHhhcCccchHHHHHHHHHH
Confidence 3333333 23667777777777654
No 298
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.48 E-value=2.6e+02 Score=24.84 Aligned_cols=103 Identities=10% Similarity=-0.025 Sum_probs=50.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHh--cCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhCCCccCHHHHHHH
Q 048743 506 IYFFCKGKMIGDALKIYRRMQE--MKIRP----TVETFYYLVYGHSSLEMYRDITILWGDIKRNIESGVLAVSRDLYETL 579 (653)
Q Consensus 506 i~~~~~~g~~~~a~~~~~~m~~--~g~~p----~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~y~~l 579 (653)
++.+....++++|.+++++... .++++ +.......+..-.....-.-+..+.+++ .. .++...-...
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l----~~---~~~~~~~r~~ 97 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI----LS---SNEIVHLKSG 97 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH----HT---CSSHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH----Hh---cCCHHHHHHH
Confidence 4455667778888877776664 22332 1111122222222222222222222222 11 4445556666
Q ss_pred HHHHHhCCCHHHHHHHHHHHH---------hCCCCCCHHhHHHHH
Q 048743 580 LLNFLQGGYFERVMEVIGYMK---------KQNMYVDKLMYKSEF 615 (653)
Q Consensus 580 i~~~~~~g~~~~a~~~~~~m~---------~~g~~p~~~t~~~l~ 615 (653)
+..+.+.|+.++|.++|=+.+ .-+..-|...|..-+
T Consensus 98 v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~~L 142 (235)
T 2d2s_A 98 TENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQL 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHH
T ss_pred HHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 777778888888877765443 234444555555544
No 299
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=32.78 E-value=1.5e+02 Score=28.23 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048743 342 HSNRAMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSL 421 (653)
Q Consensus 342 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 421 (653)
.|..-++. +...+..|+.+-+..+++.-..- -..+..-++. +...+..|+.+-+..+++ .|..++...-.+.
T Consensus 16 ~d~~g~t~-L~~Aa~~g~~~~v~~Ll~~g~~~--~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~ 87 (364)
T 3ljn_A 16 SDDENMEK-IHVAARKGQTDEVRRLIETGVSP--TIQNRFGCTA-LHLACKFGCVDTAKYLAS----VGEVHSLWHGQKP 87 (364)
T ss_dssp CCHHHHHH-HHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCH-HHHHHHHCCHHHHHHHHH----HCCCCCCBTTBCH
T ss_pred cCCCCCCH-HHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCcH-HHHHHHcCCHHHHHHHHH----CCCCccccCCCCH
Confidence 34444444 45555678887777776541111 1222222334 445566787765555444 4444443222233
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCccC
Q 048743 422 LTAYYKVKMFREAEALLKQMRKSCLVQN 449 (653)
Q Consensus 422 i~~~~~~~~~~~a~~~~~~m~~~~~~p~ 449 (653)
+...+..|+.+-+..+++.....|..|+
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCHH
Confidence 4445677888888777777555554443
No 300
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.52 E-value=1.1e+02 Score=25.23 Aligned_cols=68 Identities=7% Similarity=-0.093 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcC--ccCCCchhHHHHHHHHhhcc
Q 048743 74 QKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGR--ENLPCSDLLLLVFVHMVKTE 142 (653)
Q Consensus 74 ~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~ 142 (653)
+++.+-+.+..+..|..++. .-..++..+...+.+-.|.++++.+.+. +...+..|--..+..+...|
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 45556666666666665533 4456677777888888999999999887 66666666444446666555
No 301
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=31.99 E-value=37 Score=30.55 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=16.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHcCccCCC
Q 048743 100 SLSLARAQMPVPASMILRLMLGRENLPC 127 (653)
Q Consensus 100 i~~~~~~g~~~~a~~~~~~m~~~g~~p~ 127 (653)
+...++.|+.+....+++.+.+.|..++
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3445566667666666666666555444
No 302
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=31.94 E-value=1.3e+02 Score=25.90 Aligned_cols=52 Identities=10% Similarity=0.037 Sum_probs=29.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHH--HHHHHHHHhcCChhhhHHHHHH
Q 048743 182 LVLHACVRFGSSLKGQHIMELMSQTGVVADAHSI--IILAQIHEMNCQRDELKKFKCY 237 (653)
Q Consensus 182 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~ 237 (653)
+.+...++.|+.+-+..+ .+.|..|+.... .+.+...+..|+.+.++.+++.
T Consensus 27 t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 27 TALHLAARYSRSDAAKRL----LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp CHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred chHHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 344555677776654444 455665554321 2345555667777766666553
No 303
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=31.56 E-value=1e+02 Score=23.82 Aligned_cols=77 Identities=8% Similarity=-0.018 Sum_probs=46.2
Q ss_pred chhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHH
Q 048743 34 QVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPAS 113 (653)
Q Consensus 34 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~ 113 (653)
++..|+.-+++.... .++......++..+-.+ .+-++++.....+..|. ++.++.-++....+.|-.+..
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t-----~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~- 72 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT-----FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED- 72 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-
Confidence 345566666665442 23444556777776555 67788888877665554 456666666666666666554
Q ss_pred HHHHHHH
Q 048743 114 MILRLML 120 (653)
Q Consensus 114 ~~~~~m~ 120 (653)
+.+-.|.
T Consensus 73 ~~w~~m~ 79 (119)
T 1wty_A 73 PFWLEML 79 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 304
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.47 E-value=1.6e+02 Score=24.32 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=38.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH----H--HHHcCChHHHHHHHHHHHH
Q 048743 391 IQLGFLEAAHDILDDMELAGHPM--DSTTYKSLLT----A--YYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 391 ~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~----~--~~~~~~~~~a~~~~~~m~~ 443 (653)
...|++-+|.++|++.-...-.+ ....|..||. | ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34588888888888887665555 5566777777 2 2456899999999988765
No 305
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=31.18 E-value=5.4e+02 Score=28.36 Aligned_cols=167 Identities=6% Similarity=-0.118 Sum_probs=0.0
Q ss_pred HHHHHHhhccCCcchhhhHHHHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHH
Q 048743 58 NRFITDLCYSAEPHWLQKACDLVLKIQKGK-ADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFV 136 (653)
Q Consensus 58 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 136 (653)
..++...|+.|..+-.++|.+.|.+.+... .....+..-..+...-.+.|..++-..+++...+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~--------------- 754 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQ--------------- 754 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHc---------------
Q ss_pred HHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHH
Q 048743 137 HMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSII 216 (653)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~ 216 (653)
..+..--..++.+++...+.....++++...............
T Consensus 755 -------------------------------------~~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~ 797 (909)
T 4fke_A 755 -------------------------------------AQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATS 797 (909)
T ss_dssp -------------------------------------CCSHHHHHHHHHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHH
T ss_pred -------------------------------------cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHH
Q ss_pred HHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHh
Q 048743 217 ILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDM 276 (653)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 276 (653)
.+.....+.-..+.+.+.+..=-..-..........+..+|...+..-..++-.+-++..
T Consensus 798 ~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~t~~~~~~~~~f 857 (909)
T 4fke_A 798 TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQF 857 (909)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
No 306
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.04 E-value=3.3e+02 Score=25.34 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCC--HHHHHHHHHHHHH
Q 048743 347 MAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGF--LEAAHDILDDMEL 408 (653)
Q Consensus 347 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~ 408 (653)
...+|.-|...|+.++|...++++.... . .......+|......++ -+.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~--~-~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE--M-KSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG--G-GGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc--h-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4578888999999999999999875433 1 11223344444444443 3346667777764
No 307
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=30.79 E-value=4.8e+02 Score=27.17 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=21.6
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048743 356 KHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDME 407 (653)
Q Consensus 356 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 407 (653)
+.|+++.|...|..|.... .....-.--+-.++.+.|+.++|..+|..+.
T Consensus 297 r~~d~~~a~~~~~~l~~~~--~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEA--KEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTG--GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHccccc--cccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4455555555555554322 1111112222334444555555555555543
No 308
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=30.52 E-value=2.3e+02 Score=23.71 Aligned_cols=169 Identities=11% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHH
Q 048743 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYK----SLLTAYY 426 (653)
Q Consensus 351 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~ 426 (653)
+...++.|+++. +..+...+....+...-.+.+...+..|+.+.-.++.+.+.+.|..++...-. ..+-+..
T Consensus 10 l~~Aa~~g~~~~----~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~ 85 (186)
T 3t8k_A 10 VSAAAMLGTYED----FLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG 85 (186)
T ss_dssp HHHHHHHSCHHH----HHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred HHHHHHcCCHHH----HHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q ss_pred HcCChHHHHHHHHHHHHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCH-HHHHHHHHHHHH-ccCCCCHHHHH-
Q 048743 427 KVKMFREAEALLKQMRKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKS-DLAESLIQEMRE-EAALSTIYKLN- 503 (653)
Q Consensus 427 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~m~~-~~~~p~~~~y~- 503 (653)
...+.....++.+.+.+.|..++.....-....++-.+. .+.. ..-..+++-+.+ .|..++.....
T Consensus 86 ~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~-----------~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G 154 (186)
T 3t8k_A 86 GGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN-----------YFVDENEMIPLYKLIFSQSGLQLLIKDKWG 154 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGG-----------CCSCHHHHHHHHHHHHTSTTCCTTCCCTTS
T ss_pred CCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHH-----------cCCChhhHHHHHHHHHHhcCCCCcccCCCC
Q ss_pred -HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH
Q 048743 504 -SSIYFFCKGKMIGDALKIYRRMQEMKIRPTV 534 (653)
Q Consensus 504 -~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 534 (653)
+-+....+.|+.+-+.-+.+.+...+++.++
T Consensus 155 ~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~~~ 186 (186)
T 3t8k_A 155 LTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186 (186)
T ss_dssp CCHHHHHHTTTCHHHHHHHHHHHHHHTCCC--
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHHHhcccCC
No 309
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=29.83 E-value=2.8e+02 Score=24.22 Aligned_cols=52 Identities=10% Similarity=0.147 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCCCC
Q 048743 480 SDLAESLIQEMREEAALSTIYKLNSSIYFFCK-GKMIGDALKIYRRMQEMKIRPT 533 (653)
Q Consensus 480 ~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~ 533 (653)
.+.+..+++.+.+.|..-|..--.+.+....+ .|. ....+-.++...|+.++
T Consensus 92 ~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~--G~~~I~~eL~~KGI~~~ 144 (221)
T 3d5l_A 92 EEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK--GPGIIRQHLRQKGIGES 144 (221)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc--cHHHHHHHHHHcCCCHH
Confidence 35567778888888876555555566666655 333 24456678888888754
No 310
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.99 E-value=96 Score=27.26 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHccCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 048743 481 DLAESLIQEMREEAALS-TIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPT 533 (653)
Q Consensus 481 ~~a~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 533 (653)
+.+..+|..|...|+-- -...|-.....+...|++.+|.++|+.-++.+-+|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 46667888888877755 555677777888888888888888888888777763
No 311
>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A
Probab=28.73 E-value=87 Score=28.87 Aligned_cols=68 Identities=10% Similarity=-0.011 Sum_probs=48.1
Q ss_pred cccccchHHHHHHHHHHHHhc---cchhHHHHHHHHhhhhcCCCCchhHHHHHHHhhccCCcchhhhHHHHH
Q 048743 12 LSWEGSSREVLLRKLESASKN---HQVGEAWETFNDFQRLHGIPERHVVNRFITDLCYSAEPHWLQKACDLV 80 (653)
Q Consensus 12 l~~~~p~~~~~~~~i~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~ 80 (653)
....+++.+++..+| .++.. .++......+..+-=....|...+|.+++.++.++|++..+++|..+=
T Consensus 202 ~~r~~~~~~~~~~~~-~l~~~~~~~n~~~i~~~L~k~h~~~~~~~~~~~d~l~~~~~~~gd~~lv~~a~~~~ 272 (290)
T 1e5r_A 202 PERRPFTAEHRRRIL-SLGQVIERENFRDILFLLSKVHYKYDVHPSETYDWLIEISKQAGDEKMVVKAEQIR 272 (290)
T ss_dssp CCCEECCHHHHHHHH-GGGGTCCTTTHHHHHHHHHHHHHHEESCTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHH-HHhccchhhhHHHHHHHHHHhhhhccCChHHHHHHHHHHHHhcCChHHHHHHhhhh
Confidence 455677889999988 34322 345556666655544445678889999999999999987777776654
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.57 E-value=80 Score=27.75 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048743 361 SELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413 (653)
Q Consensus 361 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 413 (653)
+.+..+|..|...++-..-...|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45566677676666444444446666666666777777777776666655444
No 313
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.05 E-value=2.1e+02 Score=22.15 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 048743 550 YRDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGGYFERVMEVIGYMKK 601 (653)
Q Consensus 550 ~~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 601 (653)
.+++.+=++.+...+.+..+.|+...--.-|......++++.|.++.-.+..
T Consensus 38 ~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 38 CDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555555555666655544333334445566777777777766654
No 314
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=28.01 E-value=2.6e+02 Score=23.16 Aligned_cols=51 Identities=4% Similarity=-0.111 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048743 363 LSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM 413 (653)
Q Consensus 363 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 413 (653)
+..+|..|...++-..-...|......+...|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 445555555555333333335555555555555555555555555554444
No 315
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=27.82 E-value=2.1e+02 Score=25.94 Aligned_cols=63 Identities=19% Similarity=0.075 Sum_probs=27.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048743 349 KLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTT 417 (653)
Q Consensus 349 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 417 (653)
+.+...+..|+.+-+.-+++.-..-. ..+..-++..+...++.|+.+ +.+.+.+.|..|+...
T Consensus 163 t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 163 SCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIKLAIDNKDIE----MLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC--TTCCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCSTTTT
T ss_pred cHHHHHHHcChHHHHHHHHHcCCCCC--cccCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCCCC
Confidence 33444455666665555554432222 122221333233334445433 3334445565555443
No 316
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=27.32 E-value=2.1e+02 Score=21.98 Aligned_cols=75 Identities=13% Similarity=0.083 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 048743 480 SDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQE-MKIRPTVETFYYLVYGHSSLEMYRDITILWG 558 (653)
Q Consensus 480 ~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 558 (653)
+.+|..-+++..+. .+|.....++|..+-.. ++.|.++.+...+ .|+ .+.++.-.++...+.|-+++. +.|-
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~ 76 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWL 76 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHH
Confidence 44555555555433 24555566666655433 4555555555444 455 344556666666666655444 3444
Q ss_pred HHH
Q 048743 559 DIK 561 (653)
Q Consensus 559 ~~~ 561 (653)
.|.
T Consensus 77 ~m~ 79 (119)
T 1wty_A 77 EML 79 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 317
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=26.90 E-value=3.1e+02 Score=23.74 Aligned_cols=102 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHcCCccCchhhHHHH
Q 048743 386 VIDALIQL---GFLEAAHDILDDMELAGHPMDSTTYKSLLTAYYKVKM-----FREAEALLKQMRKSCLVQNLSCEMVVS 457 (653)
Q Consensus 386 li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~~p~~~~~~~~~ 457 (653)
+|+++.|+ .|++.|+-.+.+|.+.|-.|.-..=..++-+.--.|. ...|...++.....|. |.....+...
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~-PE~~i~Laqa 116 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF-PEGLFFLSQA 116 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT-TTTHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC-CHHHHHHHHH
Q ss_pred hhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCH
Q 048743 458 ERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTI 499 (653)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 499 (653)
...+..+- |++.. .|..--.+..+.+-.+.+
T Consensus 117 viyLA~AP----------KSNs~-~A~~~A~~~v~~~~~~~V 147 (213)
T 3ctd_A 117 SLYLAISP----------KSNST-KSIFKAMEAIKATNVSLV 147 (213)
T ss_dssp HHHHHHSC----------CCCGG-GHHHHHHHHHC-----CC
T ss_pred HHHHHcCC----------ccHHH-HHHHHHHHHHHhcCCCCC
No 318
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.79 E-value=87 Score=29.80 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcC-CHHHHHHHHHHHHHCCC
Q 048743 346 AMAKLINGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLG-FLEAAHDILDDMELAGH 411 (653)
Q Consensus 346 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~ 411 (653)
....++.-|...|+.++|.+.++++.... .....++..+..++-+.. .-+.+..++..+.+.|+
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~--~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPS--LLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGG--GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcc--cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 46778888888899999988888875332 111111223333332211 23445666666665543
No 319
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.31 E-value=1.9e+02 Score=23.21 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=39.5
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCH
Q 048743 488 QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMY 550 (653)
Q Consensus 488 ~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 550 (653)
+.+.+.|+.++.. --.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3455666665443 3455555555566667778888887776666777766666766666643
No 320
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=25.63 E-value=2.1e+02 Score=21.40 Aligned_cols=54 Identities=4% Similarity=-0.122 Sum_probs=40.1
Q ss_pred hhhhhhhcCCccCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHH
Q 048743 160 LHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVADAHSII 216 (653)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~ 216 (653)
|++++|..+.+....||...|-+|-. .|.|..+++..-+.++..+| .|....|.
T Consensus 53 G~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 53 GRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp TCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred hhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 47777877777778889888877754 57788888888887888776 45555544
No 321
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=25.49 E-value=4.8e+02 Score=25.42 Aligned_cols=173 Identities=12% Similarity=0.001 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhccc---hhHHHHHHHHhhhhcCC--CCchhHHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchh
Q 048743 18 SREVLLRKLESASKNHQ---VGEAWETFNDFQRLHGI--PERHVVNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQ 92 (653)
Q Consensus 18 ~~~~~~~~i~~~~~~~~---~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 92 (653)
+...-..++..+|..|+ .+.|.+.|+.....+.. .++..-..+...-.+. ...++..++.|..- .+
T Consensus 196 ~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~~--~~~~~~l~~~y~~s-------~~ 266 (419)
T 3rjo_A 196 ERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQS--TEGWDFLYSKYQFS-------LS 266 (419)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTTS--HHHHHHHHHHHHHC-------CC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeCC--HHHHHHHHHHHhcC-------CC
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccC
Q 048743 93 LDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAEL 172 (653)
Q Consensus 93 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 172 (653)
..--..++.+++...++....++++......+ ....-...++..+.....+...+++.+.+........
T Consensus 267 ~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~~-ir~qD~~~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~---------- 335 (419)
T 3rjo_A 267 STEKSQIEFALCRTQNKEKLQWLLDESFKGDK-IKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQK---------- 335 (419)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTSS-SCGGGHHHHHHHHHTSTTTHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCC-CchhHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHH----------
Q ss_pred CCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc
Q 048743 173 IKPDTMIFNLVLHACVRFGSSLKGQHIMELMSQTGVVA 210 (653)
Q Consensus 173 ~~~~~~~yn~li~~~~~~g~~~~a~~l~~~m~~~g~~p 210 (653)
..++...+..+|.+....-.-++-.+-++...+..-.+
T Consensus 336 ~~~~~~~~~~~i~~~~~~~~t~~~l~e~~~Ff~~~~~~ 373 (419)
T 3rjo_A 336 FELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKEN 373 (419)
T ss_dssp HCTTCHHHHHHHHHTTTTCCSHHHHHHHHHHHHTTTTC
T ss_pred hCcCchhHHHHHHHHhhcCCCHHHHHHHHHHHHhCccc
No 322
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.23 E-value=4e+02 Score=26.98 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=27.1
Q ss_pred ccchhHHHHHHHHhhhccCCHHHHHHHHHHh
Q 048743 246 AHHYQQFYESLLSLHFKFDDIDAAGELILDM 276 (653)
Q Consensus 246 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 276 (653)
......++|.++..|...+.++.|..+..+.
T Consensus 227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 227 NETKAMLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3444678999999999999999999999988
No 323
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.71 E-value=1.8e+02 Score=23.61 Aligned_cols=62 Identities=3% Similarity=0.058 Sum_probs=40.8
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCH
Q 048743 488 QEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMY 550 (653)
Q Consensus 488 ~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 550 (653)
+.+.+.|+.++.. --.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 4455667655433 4456666666666778888888888777777777777777777776644
No 324
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.43 E-value=81 Score=20.89 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=27.1
Q ss_pred hhHHHHHHHHhhhhcCCCCchhHHHHHHHh-hcc
Q 048743 35 VGEAWETFNDFQRLHGIPERHVVNRFITDL-CYS 67 (653)
Q Consensus 35 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~ 67 (653)
.++|.+.|.+|.+..+.++..+|...++.+ +.-
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 367888999999888888888999999988 443
No 325
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.71 E-value=1.8e+02 Score=22.99 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=41.7
Q ss_pred HHHHccCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCH
Q 048743 489 EMREEAALSTIYKLNSSIYFFCKGK-MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMY 550 (653)
Q Consensus 489 ~m~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 550 (653)
.+.+.|+.++.. --.++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 355677766544 345666666665 6777888888888887777877777777777766644
No 326
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.36 E-value=2.9e+02 Score=22.23 Aligned_cols=63 Identities=8% Similarity=-0.003 Sum_probs=40.3
Q ss_pred HHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhccc
Q 048743 80 VLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEI 143 (653)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 143 (653)
+.+.++..|..++ ..-..++..+...+.+-.|.++++.+.+.+...+..|.-..+..+...|.
T Consensus 14 ~~~~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 14 LRMSIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3344444554333 33445667777777889999999999888766666665555566666553
No 327
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.99 E-value=5.5e+02 Score=25.30 Aligned_cols=64 Identities=9% Similarity=-0.180 Sum_probs=42.4
Q ss_pred HHHHHHH---hcCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCh-----hhhHHHHHHhhhcCCCc
Q 048743 182 LVLHACV---RFGSSLKGQHIMELMSQTGVVADAHSIIILAQIHEMNCQR-----DELKKFKCYIDQLSTPF 245 (653)
Q Consensus 182 ~li~~~~---~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~~~ 245 (653)
.+|.++. +.++.+.|+..+.+|.+.|..|....-..+..+...-|.- ..|...++.....+.|.
T Consensus 257 d~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~pe 328 (447)
T 3pvs_A 257 DLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAE 328 (447)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCcH
Confidence 3445543 4689999999999999999888776666666666655542 22444455555555433
No 328
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=22.71 E-value=64 Score=21.40 Aligned_cols=26 Identities=4% Similarity=-0.112 Sum_probs=21.0
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcc
Q 048743 356 KHGKNSELSWLLLSIKKEHHSFGEST 381 (653)
Q Consensus 356 ~~~~~~~a~~~~~~m~~~~~~~~~~~ 381 (653)
..-|++.|...|.++...+.+|++..
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 35689999999999998887777643
No 329
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.55 E-value=3.6e+02 Score=23.02 Aligned_cols=89 Identities=9% Similarity=-0.057 Sum_probs=49.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---------CHHHHHHH
Q 048743 351 INGYKKHGKNSELSWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPM---------DSTTYKSL 421 (653)
Q Consensus 351 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---------~~~~~~~l 421 (653)
+...+..|+.+-+..+++.-..- -..+.. -.+-+...+..|+.+-+..+++.+.+.|..+ |..-.+.
T Consensus 125 L~~A~~~~~~~~v~~Ll~~ga~~--~~~d~~-g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp- 200 (232)
T 2rfa_A 125 LSFAACVGSEEIVRLLIEHGADI--RAQDSL-GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP- 200 (232)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT--TCCCTT-SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-
T ss_pred HHHHHHcCCHHHHHHHHHCCCCC--CCCCCC-CCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-
Confidence 44455567766555554431110 112222 2334555667889998888888888877644 2333333
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 048743 422 LTAYYKVKMFREAEALLKQMRK 443 (653)
Q Consensus 422 i~~~~~~~~~~~a~~~~~~m~~ 443 (653)
+...++.|+.+-+..+++.-..
T Consensus 201 l~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 201 FKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCcc
Confidence 3344566777766666554433
No 330
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.18 E-value=2e+02 Score=20.04 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=27.4
Q ss_pred HHHccCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 048743 490 MREEAALSTIYKLNSSIYFFCKGK-MIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548 (653)
Q Consensus 490 m~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 548 (653)
|.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344454444332 23344444332 33445555555555544455555555555555444
No 331
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.04 E-value=60 Score=28.38 Aligned_cols=150 Identities=7% Similarity=-0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccchHHHHHHHHHhhhhhhhhcCCccCCCCc
Q 048743 97 AKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPD 176 (653)
Q Consensus 97 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 176 (653)
+..+...++.|+.+....+++.-...-..++..-.+.+..++... +.+.++.+++.+..++
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g-------------------~~~~v~~Ll~~g~~~~ 67 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG-------------------HTEIVEFLLQLGVPVN 67 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHT-------------------CHHHHHHHHHTTCCSC
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcC-------------------cHHHHHHHHHhCCCCC
Q ss_pred hhhHH--HHHHHHHhcCChhhHHHHHHHHHhcCCCccHHHHH--HHHHHHHhcCChhhhHHHHHHhhhcCCCcccchhHH
Q 048743 177 TMIFN--LVLHACVRFGSSLKGQHIMELMSQTGVVADAHSII--ILAQIHEMNCQRDELKKFKCYIDQLSTPFAHHYQQF 252 (653)
Q Consensus 177 ~~~yn--~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (653)
..... +.+...+..|+.+ +++.+.+.|..++..... +.+...+..|+.+.++.+++.-......+..
T Consensus 68 ~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----- 138 (231)
T 3aji_A 68 DKDDAGWSPLHIAASAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY----- 138 (231)
T ss_dssp CCCTTSCCHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-----
T ss_pred CcCCCCCCHHHHHHHcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-----
Q ss_pred HHHHHHhhhccCCHHHHHHHHH
Q 048743 253 YESLLSLHFKFDDIDAAGELIL 274 (653)
Q Consensus 253 ~~~li~~~~~~g~~~~A~~~~~ 274 (653)
-.+.+...+..|..+-+..+++
T Consensus 139 g~t~L~~A~~~~~~~~v~~Ll~ 160 (231)
T 3aji_A 139 DATAMHRAAAKGNLKMVHILLF 160 (231)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHh
No 332
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=21.91 E-value=2.9e+02 Score=21.60 Aligned_cols=27 Identities=7% Similarity=-0.049 Sum_probs=11.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 048743 498 TIYKLNSSIYFFCKGKMIGDALKIYRR 524 (653)
Q Consensus 498 ~~~~y~~li~~~~~~g~~~~a~~~~~~ 524 (653)
|+..+...+..+...+++++|..+++-
T Consensus 59 DV~~l~~yL~~lVeek~Lek~~~vlk~ 85 (124)
T 3vu7_H 59 DILQVVKYCTDLIEEKDLEKLDLVIKY 85 (124)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 333333444444444444444444333
No 333
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.63 E-value=3.9e+02 Score=22.96 Aligned_cols=99 Identities=10% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCHH-HHHHHHHHHHHHhhhCCCccCHHHHHHH
Q 048743 501 KLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLEMYR-DITILWGDIKRNIESGVLAVSRDLYETL 579 (653)
Q Consensus 501 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~p~~~~y~~l 579 (653)
+.++++.. .|..+.+.|+-++-+|++.| .|.-..=..++-+....|..+ .|..+-....+..+.-|.+--.......
T Consensus 17 ~iSAf~KS-iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqa 94 (204)
T 2r9g_A 17 VISAFQKS-IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADV 94 (204)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHH
T ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Q ss_pred HHHHHhCCCHHHHHHHHHHHHh
Q 048743 580 LLNFLQGGYFERVMEVIGYMKK 601 (653)
Q Consensus 580 i~~~~~~g~~~~a~~~~~~m~~ 601 (653)
+.-++.+-+-..+...++...+
T Consensus 95 viyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 95 VVDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp HHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHHHHHH
No 334
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.62 E-value=1.9e+02 Score=21.37 Aligned_cols=37 Identities=22% Similarity=0.059 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHH
Q 048743 479 KSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDAL 519 (653)
Q Consensus 479 ~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~ 519 (653)
..++|.++++.+..+| | ..|..++.++...|+..-|.
T Consensus 52 ~~~~ar~Lld~L~~rG--~--~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG--S--QALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp HHHHHHHHHHHHTTSC--T--THHHHHHHHHHTTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcC--h--HHHHHHHHHHHHcCcHHHHH
Confidence 5667777777777765 2 34667777776656554443
No 335
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.20 E-value=1.3e+02 Score=24.83 Aligned_cols=48 Identities=10% Similarity=0.060 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCC
Q 048743 383 CSDVIDALIQLGFLEAAHDILDDMELA--GHPMDSTTYKSLLTAYYKVKM 430 (653)
Q Consensus 383 ~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~ 430 (653)
-..++..+...+..-.|.++++.+.+. +...+..|--.-++.+...|-
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 455666666666666677777777665 555555555555555555554
No 336
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=20.96 E-value=8.7e+02 Score=26.81 Aligned_cols=501 Identities=9% Similarity=-0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHhhhhcCCCC--------------chhHHHHHHHhhccCCcchh-hhHHHHHHHH
Q 048743 19 REVLLRKLESASKNHQVGEAWETFNDFQRLHGIPE--------------RHVVNRFITDLCYSAEPHWL-QKACDLVLKI 83 (653)
Q Consensus 19 ~~~~~~~i~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~~-~~a~~~~~~~ 83 (653)
.....+++..+.+.|...+|+.+.-+..+....+. ..+...++...-..-.+..+ .+.+++..++
T Consensus 145 ~~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~I 224 (963)
T 4ady_A 145 TSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDF 224 (963)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Q ss_pred HhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcCccCCCchhHHHHHHHHhhcccccccc-----------hHHH
Q 048743 84 QKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPCSDLLLLVFVHMVKTEIGTCLA-----------SNFL 152 (653)
Q Consensus 84 ~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~-----------~~~l 152 (653)
....+ ..-|..++..+.+-++.+.+.++|..+.+ ..|...--.+--.+.+.+...... ...+
T Consensus 225 y~k~~----~~dy~~a~~~ai~LnD~~li~~if~~l~~---~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL 297 (963)
T 4ady_A 225 LMNMP----NCDYLTLNKVVVNLNDAGLALQLFKKLKE---ENDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPAL 297 (963)
T ss_dssp HHHSS----SCCHHHHHHHHHHHTCHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHhCC----chhHHHHHHHHHHcCCHHHHHHHHHHHHh---cccHHHHHHHHHHHhcccchHHHHHHHHhccccchhHHH
Q ss_pred HHHHHHhhhhhhhhcCCccCCCCchhhHHHHHHHHH--hcCChhhHHHHHHHHHhcCCCccH----------------HH
Q 048743 153 IQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACV--RFGSSLKGQHIMELMSQTGVVADA----------------HS 214 (653)
Q Consensus 153 ~~~~~~~~~~~~a~~~~~~~~~~~~~~yn~li~~~~--~~g~~~~a~~l~~~m~~~g~~p~~----------------~t 214 (653)
.+...-....+.-..++...-..|..+-+.. +... |......|..+-+-....|..-|. ..
T Consensus 298 ~~ILsg~~~~~Lyl~FL~~~n~~d~~~l~~~-K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~ 376 (963)
T 4ady_A 298 LNILSGLPTCDYYNTFLLNNKNIDIGLLNKS-KSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKF 376 (963)
T ss_dssp HHHTTSHHHHHHHHHHHHHHCCCCHHHHHHH-HHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHH
T ss_pred HHHhCCCChHHHHHHHHHhccccchhhHHHH-HhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHH
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHhhh---cCCCcccchhHHHHHHHHhhhccCCHHHHHHHHHHhcccCCCCCCchhhhc
Q 048743 215 IIILAQIHEMNCQRDELKKFKCYIDQ---LSTPFAHHYQQFYESLLSLHFKFDDIDAAGELILDMNRYREPLPNPKLRQD 291 (653)
Q Consensus 215 ~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 291 (653)
-.+.--+....|+.+++..+++.... ...+.+. .-..+--+.+.+|.-+++..++...
T Consensus 377 sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik----~GAllaLGli~ag~~~~~~~lL~~~--------------- 437 (963)
T 4ady_A 377 TATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIK----GGSLYGLGLIYAGFGRDTTDYLKNI--------------- 437 (963)
T ss_dssp HHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHH----HHHHHHHHHHTTTTTHHHHHHHHHH---------------
T ss_pred HHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHH----HHHHHHHHHhcCCCcHHHHHHHHHH---------------
Q ss_pred ccccchhccCCCcccchhhhccchhhhHHHHHHhhhhhHHHHHHhcCCC-------CCCHHHHHHHHHHHHhcCChH-HH
Q 048743 292 AQKPYLISIGSPNLRCGLKLQIMPELLEKDSILKMEGKQELVLFRNGKL-------LHSNRAMAKLINGYKKHGKNS-EL 363 (653)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~p~~~~~~~li~~~~~~~~~~-~a 363 (653)
....- .+....-..+--+.+-.|.-+ ++
T Consensus 438 --------------------------------------------L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev 473 (963)
T 4ady_A 438 --------------------------------------------IVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEV 473 (963)
T ss_dssp --------------------------------------------HHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred --------------------------------------------HcCccccccccccHHHHHHHHHHHHHHhcCCCCHHH
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCChHHHHHHHHHH
Q 048743 364 SWLLLSIKKEHHSFGESTLCSDVIDALIQLGFLEAAHDILDDMELAGHPMDSTTYKSLLTAYY--KVKMFREAEALLKQM 441 (653)
Q Consensus 364 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~m 441 (653)
...+..+............--.|-..++-.|+-+....++..+.+. .+......+..+++ -.|+.+.+..+.+.+
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L 550 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKM 550 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Q ss_pred HHcCCccCchhhHHHHhhHHHHhhhcccccccccccCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 048743 442 RKSCLVQNLSCEMVVSERFSEVADKSASFTDTSSLMDKSDLAESLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKI 521 (653)
Q Consensus 442 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~ 521 (653)
....-..-.+...+...| +|+..|+.....++++.+.+... .++.-...+--++...|+.+.+.++
T Consensus 551 ~~~~dp~vRygaa~algl-------------AyaGTGn~~aIq~LL~~~~~d~~-d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 551 LASDESLLRYGGAFTIAL-------------AYAGTGNNSAVKRLLHVAVSDSN-DDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp HHCSCHHHHHHHHHHHHH-------------HTTTSCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HhCCCHHHHHHHHHHHHH-------------HhcCCCCHHHHHHHHHHhccCCc-HHHHHHHHHHHHhhccCCHHHHHHH
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhCC---------CHHH
Q 048743 522 YRRMQEMKIRPTVETFYYLVYGHSSLEMY-RDITILWGDIKRNIESGVLAVSRDLYETLLLNFLQGG---------YFER 591 (653)
Q Consensus 522 ~~~m~~~g~~p~~~t~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g---------~~~~ 591 (653)
++.+.+.+ .|...--..+.-+....|.. .++...+..+. ..+|..+=...+.++..-| ++..
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~-------~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~ 688 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT-------KDPVDFVRQAAMIALSMILIQQTEKLNPQVAD 688 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH-------TCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHhcCCccccchHHHH
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHH
Q 048743 592 VMEVIGYMKKQNMYVDKLMYKSEF 615 (653)
Q Consensus 592 a~~~~~~m~~~g~~p~~~t~~~l~ 615 (653)
..+.+.........-...-|...+
T Consensus 689 ~l~~L~~~~~dk~~d~~~~fga~i 712 (963)
T 4ady_A 689 INKNFLSVITNKHQEGLAKFGACV 712 (963)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHH
No 337
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.68 E-value=3.5e+02 Score=23.54 Aligned_cols=26 Identities=12% Similarity=-0.064 Sum_probs=20.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC
Q 048743 349 KLINGYKKHGKNSELSWLLLSIKKEH 374 (653)
Q Consensus 349 ~li~~~~~~~~~~~a~~~~~~m~~~~ 374 (653)
..+-.|.+.|.+++|.+++++.....
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 45667889999999999999877654
No 338
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.60 E-value=5e+02 Score=23.90 Aligned_cols=52 Identities=12% Similarity=-0.014 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCccHHH---HHHHHHHHHhcCChhhhHHHHH
Q 048743 181 NLVLHACVRFGSSLKGQHIMELMSQTGVVADAHS---IIILAQIHEMNCQRDELKKFKC 236 (653)
Q Consensus 181 n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~ 236 (653)
++.+-..++.|+.+.+..++ +.|..||... -.+-+...+..|..+-++-+++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL----~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~ 80 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 80 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHH----HCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence 44555567888887666555 4576665432 1134445556677665555544
No 339
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=20.17 E-value=3.1e+02 Score=22.53 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=37.9
Q ss_pred HHHHHHHhhccCCcchhhhHHHHHHHHHhccCCchhHHHHHHHHHHHHhcCCCchHHHHHHHHHcC
Q 048743 57 VNRFITDLCYSAEPHWLQKACDLVLKIQKGKADLLQLDLLAKLSLSLARAQMPVPASMILRLMLGR 122 (653)
Q Consensus 57 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 122 (653)
=+..|.-+.++|+|..+++|-++++.|...... ...-.......+ ..+..-.+++.+|...
T Consensus 18 ks~~L~~Lirs~~PeDL~~AN~LiK~m~~~d~~--r~e~~~k~~seL---e~V~~nv~LL~EML~~ 78 (158)
T 1naf_A 18 KSKMLARLLKSSHPEDLRAANKLIKEMVQEDQK--RMEKISKRVNAI---EEVNNNVKLLTEMVMS 78 (158)
T ss_dssp HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHhccchh--hHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 367888888999999999999999888654211 122222222221 2233457888888764
No 340
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.02 E-value=1.6e+02 Score=23.77 Aligned_cols=62 Identities=10% Similarity=-0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 048743 485 SLIQEMREEAALSTIYKLNSSIYFFCKGKMIGDALKIYRRMQEMKIRPTVETFYYLVYGHSSLE 548 (653)
Q Consensus 485 ~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 548 (653)
.+-+.+.+.|+.++.. -..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 5 ~~~~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 5 DWKSDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp THHHHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Done!