BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048744
         (312 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F0H|A Chain A, Unactivated Rubisco With Oxygen Bound
 pdb|4F0K|A Chain A, Unactivated Rubisco With Magnesium And Carbon Dioxide
           Bound
 pdb|4F0M|A Chain A, Unactivated Rubisco With Magnesium And A Water Molecule
           Bound
          Length = 493

 Score = 29.3 bits (64), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 9/66 (13%)

Query: 29  GLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMVQMGMI 88
           G  G  DG+QS +  +++AL ++    +EN++      E L   ++N          G +
Sbjct: 413 GTIGHPDGIQSGATANRVALEAMILARNENRDFLTEGPEILREAAKNX---------GAL 463

Query: 89  KTAMDL 94
           +TA+DL
Sbjct: 464 RTALDL 469


>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
           Aminopeptidase 2
 pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
           Aminopeptidase 2
          Length = 967

 Score = 28.1 bits (61), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 156 EHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQ 215
           +++ ++L  I+++  G+++  D  R     ++++FD  +Y  +  +SGT  +  F ++ +
Sbjct: 853 QNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAH--FSSKDK 910

Query: 216 LQNLLLISEFL 226
           LQ + L  E L
Sbjct: 911 LQEVKLFFESL 921


>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
           Aminopeptidase 2 Variant N392k
 pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
           Aminopeptidase 2 Variant N392k
          Length = 967

 Score = 28.1 bits (61), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 156 EHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQ 215
           +++ ++L  I+++  G+++  D  R     ++++FD  +Y  +  +SGT  +  F ++ +
Sbjct: 853 QNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAH--FSSKDK 910

Query: 216 LQNLLLISEFL 226
           LQ + L  E L
Sbjct: 911 LQEVKLFFESL 921


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.132    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,847,308
Number of Sequences: 62578
Number of extensions: 276888
Number of successful extensions: 507
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 7
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)