Query 048744
Match_columns 312
No_of_seqs 131 out of 274
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 12:38:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2973 Uncharacterized conser 100.0 1.2E-79 2.6E-84 564.2 22.2 299 1-307 1-299 (353)
2 PF04063 DUF383: Domain of unk 100.0 5.5E-58 1.2E-62 405.4 11.6 178 92-271 1-192 (192)
3 PLN03200 cellulose synthase-in 99.3 3.4E-10 7.3E-15 127.2 20.2 256 4-299 14-280 (2102)
4 PF05804 KAP: Kinesin-associat 99.2 1.4E-09 3E-14 113.1 20.2 272 5-296 292-623 (708)
5 PLN03200 cellulose synthase-in 99.1 2.4E-09 5.1E-14 120.6 19.7 256 4-296 447-738 (2102)
6 PF04064 DUF384: Domain of unk 99.0 1.6E-10 3.4E-15 83.0 1.2 33 275-307 1-33 (58)
7 KOG4224 Armadillo repeat prote 99.0 1.6E-08 3.5E-13 96.5 15.0 217 4-238 209-429 (550)
8 KOG4224 Armadillo repeat prote 98.9 9.4E-08 2E-12 91.4 17.4 256 4-305 168-429 (550)
9 PF10508 Proteasom_PSMB: Prote 98.8 2.3E-07 4.9E-12 93.9 16.3 243 4-289 78-327 (503)
10 PF05804 KAP: Kinesin-associat 98.7 2E-07 4.3E-12 97.2 14.8 184 15-215 261-446 (708)
11 PF04826 Arm_2: Armadillo-like 98.7 9.3E-07 2E-11 82.0 16.4 161 2-179 11-175 (254)
12 cd00020 ARM Armadillo/beta-cat 98.7 1.2E-07 2.6E-12 75.4 9.1 109 4-114 8-119 (120)
13 PF04826 Arm_2: Armadillo-like 98.5 1.8E-06 3.9E-11 80.0 13.6 155 5-175 56-213 (254)
14 KOG0166 Karyopherin (importin) 98.5 1.2E-05 2.6E-10 80.6 18.5 256 4-296 110-410 (514)
15 PF10508 Proteasom_PSMB: Prote 98.4 5.6E-05 1.2E-09 76.6 20.8 275 5-298 121-438 (503)
16 KOG0166 Karyopherin (importin) 98.2 4.3E-05 9.3E-10 76.7 14.2 199 4-215 195-398 (514)
17 cd00020 ARM Armadillo/beta-cat 98.1 1.6E-05 3.4E-10 63.0 8.9 112 46-167 7-120 (120)
18 KOG1048 Neural adherens juncti 97.5 0.00086 1.9E-08 69.7 11.6 196 4-210 234-452 (717)
19 KOG1222 Kinesin associated pro 97.1 0.024 5.3E-07 56.7 16.0 259 5-291 347-631 (791)
20 COG5064 SRP1 Karyopherin (impo 96.8 0.011 2.3E-07 57.0 10.4 214 3-236 157-380 (526)
21 KOG4500 Rho/Rac GTPase guanine 96.8 0.02 4.4E-07 56.6 12.5 192 5-207 225-428 (604)
22 KOG1222 Kinesin associated pro 96.7 0.023 5E-07 56.8 12.3 160 6-179 307-467 (791)
23 KOG2122 Beta-catenin-binding p 96.7 0.0081 1.8E-07 66.4 9.7 180 4-191 343-540 (2195)
24 PF13646 HEAT_2: HEAT repeats; 96.6 0.016 3.5E-07 43.6 8.2 83 5-109 1-86 (88)
25 PF03224 V-ATPase_H_N: V-ATPas 96.5 0.049 1.1E-06 51.7 12.8 196 8-213 60-272 (312)
26 PTZ00429 beta-adaptin; Provisi 96.3 0.25 5.4E-06 52.6 17.6 101 6-117 108-210 (746)
27 PF01602 Adaptin_N: Adaptin N 96.3 0.099 2.1E-06 52.4 14.1 243 7-295 83-347 (526)
28 PF04063 DUF383: Domain of unk 96.2 0.021 4.6E-07 50.9 8.0 124 59-189 9-156 (192)
29 PF05536 Neurochondrin: Neuroc 96.2 0.028 6.1E-07 57.7 9.9 98 15-117 69-170 (543)
30 KOG2973 Uncharacterized conser 96.2 0.055 1.2E-06 51.4 10.7 117 5-126 46-172 (353)
31 PF03224 V-ATPase_H_N: V-ATPas 95.7 0.041 8.8E-07 52.3 8.1 135 4-148 147-296 (312)
32 COG5064 SRP1 Karyopherin (impo 95.7 0.029 6.3E-07 54.0 6.7 136 6-146 288-426 (526)
33 KOG1048 Neural adherens juncti 95.6 0.053 1.2E-06 56.7 8.8 165 9-187 524-702 (717)
34 KOG0946 ER-Golgi vesicle-tethe 95.5 0.099 2.2E-06 55.0 10.3 138 3-147 122-270 (970)
35 KOG1293 Proteins containing ar 95.5 0.1 2.2E-06 53.8 10.2 113 3-117 419-535 (678)
36 KOG2171 Karyopherin (importin) 95.4 0.17 3.8E-06 55.0 12.2 209 5-236 391-613 (1075)
37 PF00514 Arm: Armadillo/beta-c 95.3 0.032 6.9E-07 36.6 4.1 41 75-115 1-41 (41)
38 KOG2734 Uncharacterized conser 95.1 0.97 2.1E-05 45.1 15.3 200 4-213 126-349 (536)
39 KOG0946 ER-Golgi vesicle-tethe 95.1 0.41 9E-06 50.6 13.2 135 4-145 62-219 (970)
40 PRK13800 putative oxidoreducta 95.0 2.2 4.8E-05 46.5 19.5 90 4-114 622-712 (897)
41 KOG2023 Nuclear transport rece 94.7 0.2 4.2E-06 52.1 9.6 131 4-147 175-308 (885)
42 PTZ00429 beta-adaptin; Provisi 94.5 2.1 4.6E-05 45.7 17.3 66 6-75 143-209 (746)
43 PF00514 Arm: Armadillo/beta-c 94.2 0.043 9.2E-07 36.0 2.5 39 34-74 2-41 (41)
44 PRK09687 putative lyase; Provi 93.9 0.79 1.7E-05 43.1 11.3 102 5-128 130-233 (280)
45 KOG4646 Uncharacterized conser 93.7 0.45 9.8E-06 40.4 8.3 107 5-113 18-126 (173)
46 PRK09687 putative lyase; Provi 93.5 1.4 3.1E-05 41.4 12.4 28 86-113 159-186 (280)
47 KOG2122 Beta-catenin-binding p 93.5 0.56 1.2E-05 52.7 10.5 198 5-212 396-603 (2195)
48 PF05918 API5: Apoptosis inhib 93.1 1.8 3.8E-05 44.7 13.0 274 5-300 25-362 (556)
49 smart00185 ARM Armadillo/beta- 92.8 0.25 5.4E-06 31.5 4.4 39 77-115 3-41 (41)
50 KOG4199 Uncharacterized conser 92.8 1.2 2.6E-05 43.2 10.5 199 1-215 186-408 (461)
51 KOG2023 Nuclear transport rece 92.7 0.52 1.1E-05 49.1 8.5 234 4-287 11-250 (885)
52 PF05536 Neurochondrin: Neuroc 92.2 2.9 6.2E-05 43.1 13.4 121 3-127 5-140 (543)
53 PF12830 Nipped-B_C: Sister ch 92.1 3.3 7.1E-05 36.4 12.1 147 5-170 10-170 (187)
54 PF12717 Cnd1: non-SMC mitotic 91.0 1.4 3E-05 38.3 8.4 66 5-75 27-93 (178)
55 PF01602 Adaptin_N: Adaptin N 90.7 0.54 1.2E-05 47.1 6.2 56 12-72 123-179 (526)
56 PF12717 Cnd1: non-SMC mitotic 90.2 1 2.2E-05 39.2 6.8 90 16-116 1-93 (178)
57 KOG1789 Endocytosis protein RM 89.8 1.4 3E-05 48.4 8.4 111 5-117 1773-1885(2235)
58 cd00256 VATPase_H VATPase_H, r 89.7 17 0.00037 36.5 15.7 195 5-211 55-259 (429)
59 KOG0168 Putative ubiquitin fus 89.7 1.3 2.7E-05 47.5 8.0 136 5-148 169-311 (1051)
60 PF12755 Vac14_Fab1_bd: Vacuol 88.8 1.5 3.2E-05 34.7 6.2 67 45-114 26-95 (97)
61 PF02985 HEAT: HEAT repeat; I 88.0 0.61 1.3E-05 28.6 2.8 26 5-30 2-27 (31)
62 PF13646 HEAT_2: HEAT repeats; 87.9 0.95 2.1E-05 33.7 4.4 55 3-69 31-87 (88)
63 PF12755 Vac14_Fab1_bd: Vacuol 87.9 1.3 2.8E-05 35.0 5.3 68 5-74 29-96 (97)
64 KOG2160 Armadillo/beta-catenin 87.6 12 0.00026 36.4 12.5 200 5-216 126-335 (342)
65 PF13513 HEAT_EZ: HEAT-like re 87.4 1.4 3.1E-05 30.3 4.7 54 17-72 1-55 (55)
66 smart00185 ARM Armadillo/beta- 87.3 0.74 1.6E-05 29.2 3.0 38 35-74 3-41 (41)
67 PRK13800 putative oxidoreducta 87.3 3.7 8E-05 44.8 10.0 91 5-114 744-835 (897)
68 PF08569 Mo25: Mo25-like; Int 86.9 4.7 0.0001 39.0 9.5 195 5-206 78-279 (335)
69 KOG4199 Uncharacterized conser 86.4 4.5 9.8E-05 39.4 8.8 186 16-215 255-449 (461)
70 PF09450 DUF2019: Domain of un 86.2 0.48 1E-05 38.2 1.9 58 3-72 47-105 (106)
71 COG5096 Vesicle coat complex, 86.1 3.1 6.6E-05 44.4 8.3 94 11-115 100-195 (757)
72 PF12031 DUF3518: Domain of un 84.7 2.1 4.5E-05 39.6 5.5 80 18-97 139-227 (257)
73 KOG2160 Armadillo/beta-catenin 84.1 14 0.0003 35.9 11.0 142 14-166 94-239 (342)
74 PF14664 RICTOR_N: Rapamycin-i 82.3 15 0.00032 36.1 10.8 177 16-205 81-264 (371)
75 cd00256 VATPase_H VATPase_H, r 81.5 14 0.0003 37.1 10.3 100 16-117 157-260 (429)
76 PF14838 INTS5_C: Integrator c 81.4 29 0.00062 36.9 13.0 163 6-177 202-400 (696)
77 PF13513 HEAT_EZ: HEAT-like re 81.3 4.4 9.5E-05 27.7 5.0 53 60-113 2-55 (55)
78 PF14664 RICTOR_N: Rapamycin-i 81.0 44 0.00096 32.8 13.6 160 11-191 34-199 (371)
79 PF12348 CLASP_N: CLASP N term 79.2 1.1 2.5E-05 39.9 1.8 116 1-117 1-125 (228)
80 KOG1293 Proteins containing ar 78.5 38 0.00082 35.6 12.5 183 14-206 388-575 (678)
81 KOG1248 Uncharacterized conser 78.3 24 0.00052 39.3 11.5 188 11-212 662-858 (1176)
82 TIGR02270 conserved hypothetic 77.8 15 0.00032 36.6 9.2 110 5-119 180-300 (410)
83 KOG3036 Protein involved in ce 76.6 17 0.00037 33.9 8.5 101 14-114 179-290 (293)
84 TIGR02270 conserved hypothetic 76.0 50 0.0011 32.9 12.4 25 5-30 119-143 (410)
85 KOG4413 26S proteasome regulat 75.1 88 0.0019 30.7 14.6 154 5-168 130-291 (524)
86 PF12460 MMS19_C: RNAPII trans 74.4 28 0.0006 34.4 10.2 208 5-231 191-412 (415)
87 KOG1240 Protein kinase contain 74.3 16 0.00035 40.8 9.0 193 5-240 464-671 (1431)
88 KOG4646 Uncharacterized conser 73.5 14 0.00029 31.7 6.5 81 47-127 17-99 (173)
89 PF10165 Ric8: Guanine nucleot 73.0 47 0.001 33.4 11.5 93 23-117 1-110 (446)
90 PF11841 DUF3361: Domain of un 72.2 13 0.00029 32.2 6.4 76 48-123 13-97 (160)
91 PF10363 DUF2435: Protein of u 72.0 9.9 0.00021 29.7 5.1 69 3-74 3-72 (92)
92 PF07539 DRIM: Down-regulated 71.3 10 0.00022 32.0 5.5 52 8-70 22-73 (141)
93 PF14726 RTTN_N: Rotatin, an a 70.9 33 0.00072 27.2 7.9 78 18-97 2-81 (98)
94 PF12348 CLASP_N: CLASP N term 70.3 8.5 0.00018 34.2 5.1 68 6-73 134-205 (228)
95 KOG1824 TATA-binding protein-i 69.6 59 0.0013 35.9 11.6 204 4-210 652-886 (1233)
96 KOG1061 Vesicle coat complex A 69.3 70 0.0015 34.1 12.0 94 14-117 97-191 (734)
97 KOG4500 Rho/Rac GTPase guanine 68.9 33 0.0007 34.7 9.0 107 21-128 291-403 (604)
98 KOG1058 Vesicle coat complex C 68.2 36 0.00078 36.5 9.6 31 266-296 432-462 (948)
99 KOG4653 Uncharacterized conser 67.3 29 0.00063 37.6 8.8 186 4-213 728-921 (982)
100 COG1413 FOG: HEAT repeat [Ener 66.5 31 0.00067 32.5 8.3 60 4-75 44-104 (335)
101 PF11707 Npa1: Ribosome 60S bi 64.9 1.3E+02 0.0029 28.7 15.1 202 4-208 57-301 (330)
102 PF02985 HEAT: HEAT repeat; I 64.8 5.7 0.00012 24.2 2.0 27 47-73 1-28 (31)
103 KOG0212 Uncharacterized conser 64.6 53 0.0012 34.1 9.7 188 1-210 248-444 (675)
104 KOG1062 Vesicle coat complex A 64.1 1.8E+02 0.0039 31.5 13.8 127 136-291 254-389 (866)
105 PF14666 RICTOR_M: Rapamycin-i 64.0 68 0.0015 29.3 9.7 124 86-221 51-202 (226)
106 PF14668 RICTOR_V: Rapamycin-i 60.5 13 0.00028 27.9 3.6 29 265-293 42-70 (73)
107 KOG0168 Putative ubiquitin fus 60.3 59 0.0013 35.4 9.5 109 3-115 211-323 (1051)
108 KOG1242 Protein containing ada 60.3 24 0.00051 36.6 6.5 110 1-117 293-403 (569)
109 PF08167 RIX1: rRNA processing 55.3 73 0.0016 27.3 8.0 105 6-113 28-141 (165)
110 PF12031 DUF3518: Domain of un 52.8 33 0.00072 31.9 5.6 81 61-146 140-228 (257)
111 KOG1242 Protein containing ada 52.1 41 0.00088 34.9 6.6 150 18-189 269-419 (569)
112 PF08158 NUC130_3NT: NUC130/3N 51.0 20 0.00043 25.1 3.0 37 243-281 11-48 (52)
113 PF11698 V-ATPase_H_C: V-ATPas 49.8 14 0.00029 30.5 2.3 64 4-69 44-110 (119)
114 PF08569 Mo25: Mo25-like; Int 49.6 2.5E+02 0.0055 27.2 12.1 173 16-206 12-189 (335)
115 PF04821 TIMELESS: Timeless pr 48.6 1E+02 0.0022 28.6 8.4 59 4-74 14-72 (266)
116 COG5096 Vesicle coat complex, 47.6 35 0.00077 36.6 5.6 67 5-75 129-196 (757)
117 COG5098 Chromosome condensatio 47.3 32 0.00069 36.7 5.0 107 4-121 934-1043(1128)
118 COG1413 FOG: HEAT repeat [Ener 45.5 1.4E+02 0.003 28.0 8.9 64 3-76 180-244 (335)
119 PF11701 UNC45-central: Myosin 44.8 60 0.0013 27.6 5.7 116 3-124 3-125 (157)
120 KOG2259 Uncharacterized conser 43.0 62 0.0014 34.3 6.3 109 12-126 382-505 (823)
121 KOG2171 Karyopherin (importin) 42.5 1.2E+02 0.0026 34.0 8.6 112 5-118 116-238 (1075)
122 KOG1060 Vesicle coat complex A 41.6 1.2E+02 0.0025 33.0 8.1 64 12-83 117-182 (968)
123 KOG1061 Vesicle coat complex A 41.4 59 0.0013 34.7 6.0 66 5-74 123-189 (734)
124 PF14668 RICTOR_V: Rapamycin-i 41.1 1.1E+02 0.0024 22.8 6.0 64 62-125 4-68 (73)
125 KOG0212 Uncharacterized conser 40.9 67 0.0015 33.4 6.1 72 5-78 338-410 (675)
126 KOG1789 Endocytosis protein RM 40.2 1.1E+02 0.0025 34.5 7.9 82 58-147 1785-1866(2235)
127 KOG4413 26S proteasome regulat 39.7 1.9E+02 0.004 28.5 8.5 143 15-167 226-377 (524)
128 KOG1059 Vesicle coat complex A 39.6 1.2E+02 0.0026 32.5 7.8 102 47-168 145-249 (877)
129 PF12765 Cohesin_HEAT: HEAT re 38.5 31 0.00067 22.8 2.3 23 5-27 20-42 (42)
130 cd03568 VHS_STAM VHS domain fa 37.7 1E+02 0.0022 26.0 6.0 69 46-114 37-109 (144)
131 KOG2025 Chromosome condensatio 37.4 3.2E+02 0.007 29.5 10.4 112 6-127 88-202 (892)
132 KOG3678 SARM protein (with ste 36.2 41 0.00088 34.4 3.7 70 2-72 378-450 (832)
133 PF12397 U3snoRNP10: U3 small 36.0 2.2E+02 0.0048 22.6 8.0 65 5-76 8-76 (121)
134 COG5552 Uncharacterized conser 35.4 55 0.0012 24.8 3.4 36 1-36 1-37 (88)
135 PF09759 Atx10homo_assoc: Spin 35.1 1.1E+02 0.0024 24.4 5.4 63 157-222 5-70 (102)
136 KOG0414 Chromosome condensatio 34.9 59 0.0013 36.5 4.9 93 4-107 961-1056(1251)
137 PF05004 IFRD: Interferon-rela 34.7 1.7E+02 0.0037 27.8 7.7 96 4-100 44-143 (309)
138 PF10165 Ric8: Guanine nucleot 33.1 1.4E+02 0.0031 29.9 7.2 61 65-125 1-71 (446)
139 PF12830 Nipped-B_C: Sister ch 32.8 2.2E+02 0.0047 24.8 7.5 121 47-177 9-133 (187)
140 PF12719 Cnd3: Nuclear condens 32.4 4.2E+02 0.009 24.7 10.6 156 5-176 28-194 (298)
141 KOG3678 SARM protein (with ste 32.3 2.1E+02 0.0046 29.4 7.9 93 48-148 266-361 (832)
142 PF12331 DUF3636: Protein of u 31.8 52 0.0011 28.2 3.2 39 18-57 109-147 (149)
143 COG5240 SEC21 Vesicle coat com 31.5 2.1E+02 0.0044 30.3 7.8 101 6-111 343-456 (898)
144 KOG1824 TATA-binding protein-i 30.5 8.3E+02 0.018 27.5 12.4 23 265-287 1079-1101(1233)
145 PF14663 RasGEF_N_2: Rapamycin 30.1 2.1E+02 0.0046 23.0 6.5 79 5-94 10-88 (115)
146 cd03569 VHS_Hrs_Vps27p VHS dom 29.4 1.7E+02 0.0037 24.5 6.0 71 46-116 41-115 (142)
147 cd03567 VHS_GGA VHS domain fam 29.0 1.5E+02 0.0033 24.9 5.5 69 46-114 38-115 (139)
148 KOG2038 CAATT-binding transcri 28.9 91 0.002 33.7 4.9 72 47-123 305-378 (988)
149 PF08045 CDC14: Cell division 28.6 1.7E+02 0.0036 27.4 6.2 77 5-101 135-212 (257)
150 PF10363 DUF2435: Protein of u 27.9 2.8E+02 0.0061 21.5 6.5 82 49-146 6-89 (92)
151 PF06025 DUF913: Domain of Unk 27.8 2.5E+02 0.0055 27.6 7.7 96 46-148 106-210 (379)
152 KOG1832 HIV-1 Vpr-binding prot 27.0 98 0.0021 34.2 4.8 40 47-86 740-785 (1516)
153 PF04821 TIMELESS: Timeless pr 26.2 1.2E+02 0.0025 28.2 4.8 57 46-115 13-72 (266)
154 COG5369 Uncharacterized conser 25.5 1.7E+02 0.0037 30.6 6.0 167 5-181 433-608 (743)
155 PF11707 Npa1: Ribosome 60S bi 25.3 3.4E+02 0.0073 25.9 8.0 101 17-118 128-240 (330)
156 smart00288 VHS Domain present 25.3 2.6E+02 0.0057 22.9 6.3 69 46-114 37-110 (133)
157 PF08216 CTNNBL: Catenin-beta- 25.1 2.4E+02 0.0051 22.9 5.7 76 18-101 27-102 (108)
158 KOG1077 Vesicle coat complex A 25.1 1.9E+02 0.004 31.2 6.3 75 4-83 330-406 (938)
159 KOG2259 Uncharacterized conser 25.0 92 0.002 33.1 4.1 58 8-72 203-261 (823)
160 cd03561 VHS VHS domain family; 24.9 2.5E+02 0.0053 23.0 6.1 70 46-115 37-112 (133)
161 PF12460 MMS19_C: RNAPII trans 24.8 6.7E+02 0.014 24.6 10.5 110 5-117 273-396 (415)
162 PF14726 RTTN_N: Rotatin, an a 24.6 1.5E+02 0.0033 23.4 4.5 42 86-127 30-71 (98)
163 KOG1248 Uncharacterized conser 24.3 91 0.002 35.0 4.1 64 4-69 828-892 (1176)
164 PF06012 DUF908: Domain of Unk 24.2 1.8E+02 0.0038 27.9 5.8 79 18-96 237-326 (329)
165 KOG4231 Intracellular membrane 23.2 1.5E+02 0.0032 30.7 5.1 69 47-115 329-399 (763)
166 PF08324 PUL: PUL domain; Int 23.0 1.4E+02 0.0031 27.1 4.8 137 138-300 110-251 (268)
167 PF14663 RasGEF_N_2: Rapamycin 22.8 1.5E+02 0.0033 23.9 4.3 39 47-85 9-48 (115)
168 KOG1566 Conserved protein Mo25 22.5 4.7E+02 0.01 25.4 8.1 123 3-126 79-207 (342)
169 KOG1992 Nuclear export recepto 22.3 1.8E+02 0.0039 31.8 5.7 60 151-210 302-391 (960)
170 KOG1058 Vesicle coat complex C 21.7 7.1E+02 0.015 27.2 9.8 42 165-212 424-465 (948)
171 PF06371 Drf_GBD: Diaphanous G 21.1 1.7E+02 0.0036 24.8 4.6 55 60-114 131-186 (187)
No 1
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.2e-79 Score=564.21 Aligned_cols=299 Identities=40% Similarity=0.584 Sum_probs=276.5
Q ss_pred CcchHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCCChhHHH
Q 048744 1 MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAG 80 (312)
Q Consensus 1 m~~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~~~ 80 (312)
|.+++.||++||++++|+||+.|+++++|||+. +-+.++++....+++|..|..+..+ +.+|+++|||+|+++.+++
T Consensus 1 m~s~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~ 77 (353)
T KOG2973|consen 1 MTSELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRK 77 (353)
T ss_pred CchHHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHH
Confidence 889999999999999999999999999999999 4445565544689999999999855 8999999999999999999
Q ss_pred HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHH
Q 048744 81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGS 160 (312)
Q Consensus 81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~ 160 (312)
.|++. ++..+|+++.||.+++||.+||+|+|||+.+.++..+++...++.. ..+++|+..|+..+++ +.+++||+|+
T Consensus 78 ~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~-~~lm~l~~~~~d~~~n-~~a~f~ylA~ 154 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKD-SGLMRLARAFCDKSYN-AYAEFHYLAP 154 (353)
T ss_pred HHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccc-cchHHHHHHHhCcccc-cccchhHHHH
Confidence 99988 9999999999999999999999999999999999988877654322 3589999999999888 7789999999
Q ss_pred HHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCCCC
Q 048744 161 ILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVY 240 (312)
Q Consensus 161 vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee~ 240 (312)
||+|+||.+.||.||+++++.+.++++||.+++|.+||+||||||||||||+..|. +++..++++|||||+||||||+|
T Consensus 155 vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 155 VFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcCCcccc
Confidence 99999999999999999999899999999889999999999999999999999995 88888899999999999999999
Q ss_pred ChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhHHHHHHhCCcchhccccccCCCC
Q 048744 241 KEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVHGSGTEDPS 307 (312)
Q Consensus 241 ~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~~lr~~~vy~vlr~~~~~e~~ 307 (312)
|||||++||++|| |++.+|+||+||+||+|++|||++||+|+.||++||++|||+|+|+.|+.|++
T Consensus 234 sEEdm~~LP~eLQ-yLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~d 299 (353)
T KOG2973|consen 234 SEEDMAKLPVELQ-YLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEED 299 (353)
T ss_pred CHHHHhcCCHhhh-cCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCc
Confidence 9999999999999 58877777789999999999999999999999999999999999999988754
No 2
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=100.00 E-value=5.5e-58 Score=405.35 Aligned_cols=178 Identities=35% Similarity=0.613 Sum_probs=164.5
Q ss_pred HHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhh---------hhhhhhHHHHHHHHhcCCCC--CCCCchhhHHH
Q 048744 92 MDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDE---------QIQGLYVMKLVRSFCRSSSE--ASDDPFEHVGS 160 (312)
Q Consensus 92 v~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e---------~~~~~~l~~Ll~~f~~~~~~--~~~~~~~~la~ 160 (312)
|+.|.++++++||++||||||||+.++|+.++++.+.+ ..+++++.+|+++|++|... +++++|||+|+
T Consensus 1 v~~i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~ 80 (192)
T PF04063_consen 1 VSYITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLAS 80 (192)
T ss_pred CCeecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHH
Confidence 46789999999999999999999999999999999876 35677899999999996543 46789999999
Q ss_pred HHHhhcCChhhhhhhcccccch--hhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhc-cChhhhhhhcccCC
Q 048744 161 ILVNISKKEAGRKILLDPKRGL--LKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLIS-EFLWPALLLPVAGN 237 (312)
Q Consensus 161 vl~NlS~~~~gR~~~l~~~~~~--l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~-~~~lp~lLlPlaG~ 237 (312)
||+|+||+|+||+||++++++. +++|+||++|+|.+||+||||||||||||.+.|+ |+|+++ +++|||||+|||||
T Consensus 81 vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~-~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 81 VLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHE-WLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred HHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHH-HhcCchhhhhHHHHHhhccCC
Confidence 9999999999999999999876 9999999999999999999999999999999995 888887 89999999999999
Q ss_pred CCCChhhhccCcHHhhhhhccCCCCCCChHHHHH
Q 048744 238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQ 271 (312)
Q Consensus 238 ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~ 271 (312)
||||+||+++||++|| +++++|+||+||+||+|
T Consensus 160 Ee~d~ee~~~lp~~LQ-~L~~dK~RE~d~~ir~m 192 (192)
T PF04063_consen 160 EELDEEEMEKLPPELQ-LLPPDKKREPDPDIRKM 192 (192)
T ss_pred CcCCHHHHHcCCHHHh-hcCCCCccCCCcchhcC
Confidence 9999999999999999 58888888889999986
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.25 E-value=3.4e-10 Score=127.22 Aligned_cols=256 Identities=16% Similarity=0.163 Sum_probs=196.0
Q ss_pred hHHHHHhccCCC--CHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHH
Q 048744 4 ELEELLGFLCSP--SPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELA 79 (312)
Q Consensus 4 ~l~ELv~FL~~~--~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~ 79 (312)
++..||+=|+++ .++.|..|+..|+.++.. +++|..|.... +++|.|+.+++.+ ..+..+|+.+|.|||.++..+
T Consensus 14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~a-GaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk 92 (2102)
T PLN03200 14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHS-QAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLR 92 (2102)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHcc-CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHH
Confidence 577888888865 899999999999999988 66788886654 7899999999766 788899999999999999999
Q ss_pred HHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc--cch-HHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCc--
Q 048744 80 GKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD--YGI-SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDP-- 154 (312)
Q Consensus 80 ~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~--~~~-~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~-- 154 (312)
..|+..|+|+.+++.+.+.+......|++.|.+|+... +.. .+++-. .| .++.|++++..|. +.+.
T Consensus 93 ~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~-----~G-aVp~Lv~lL~~gs---k~d~~L 163 (2102)
T PLN03200 93 VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFST-----EG-VVPSLWDQLQPGN---KQDKVV 163 (2102)
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhh-----cC-ChHHHHHHHhCCc---hhhHHH
Confidence 99998899999999999888888889999999999874 222 122211 22 4889999988874 2222
Q ss_pred hhhHHHHHHhhcCChhhhh-hhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhc
Q 048744 155 FEHVGSILVNISKKEAGRK-ILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLP 233 (312)
Q Consensus 155 ~~~la~vl~NlS~~~~gR~-~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlP 233 (312)
-.+...+|.||+..++++. .+++.+ .+..++..+.++++.-+..++.++-+.|+..+.....++. ...+|.+
T Consensus 164 ~~~Av~AL~nLs~~~en~~~~IIeaG--aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe--aGaVP~L--- 236 (2102)
T PLN03200 164 EGLLTGALRNLCGSTDGFWSATLEAG--GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD--AGAVKQL--- 236 (2102)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH--CCCHHHH---
Confidence 2455789999999999985 556654 6777777777788888888999998888875544323332 2334444
Q ss_pred ccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhcc
Q 048744 234 VAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLVH 299 (312)
Q Consensus 234 laG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vlr 299 (312)
+++ +.. ..++.+|...+-+|..||+ +.+-|+.+++.|+.+.|-
T Consensus 237 ------------------V~L-L~s----g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI 280 (2102)
T PLN03200 237 ------------------LKL-LGQ----GNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALI 280 (2102)
T ss_pred ------------------HHH-Hcc----CCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHH
Confidence 331 211 1267899999999999998 578888888888877443
No 4
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.20 E-value=1.4e-09 Score=113.07 Aligned_cols=272 Identities=21% Similarity=0.252 Sum_probs=185.0
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhh
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMV 83 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~ 83 (312)
+.-|+.+|.+.+.++.-.|+..|--+|...+|+..+.+. ++++.|++++..+ ......|+.+|.|||.|+.++..++
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~--giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV 369 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAES--GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMV 369 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHc--CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 667999999999999999999999999999999998764 6999999999877 7789999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHH
Q 048744 84 QMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILV 163 (312)
Q Consensus 84 ~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~ 163 (312)
+.|+|+.++..+.+++. ...+..+|.|||..+++. .++...+ .++.+++++..+..+.- ..+ +..++.
T Consensus 370 ~~GlIPkLv~LL~d~~~--~~val~iLy~LS~dd~~r-~~f~~Td------cIp~L~~~Ll~~~~~~v--~~e-liaL~i 437 (708)
T PF05804_consen 370 SLGLIPKLVELLKDPNF--REVALKILYNLSMDDEAR-SMFAYTD------CIPQLMQMLLENSEEEV--QLE-LIALLI 437 (708)
T ss_pred HCCCcHHHHHHhCCCch--HHHHHHHHHHhccCHhhH-HHHhhcc------hHHHHHHHHHhCCCccc--cHH-HHHHHH
Confidence 99999999999987654 456899999999999754 4555432 36788888777643321 122 568888
Q ss_pred hhcCChhhhhhhccccc-------------chhhhhhhccc-CC----------------------chhhHhhHHHHHHh
Q 048744 164 NISKKEAGRKILLDPKR-------------GLLKQIVRQFD-SS----------------------NYLRKKGVSGTIRN 207 (312)
Q Consensus 164 NlS~~~~gR~~~l~~~~-------------~~l~~ll~~~~-~~----------------------s~iRR~gva~~ikN 207 (312)
|+|..++.-+.+++.+. .++.+++.-+. |+ +.-----++||+.|
T Consensus 438 NLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaN 517 (708)
T PF05804_consen 438 NLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILAN 517 (708)
T ss_pred HHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHh
Confidence 99988888888876431 01111222111 11 11222234555555
Q ss_pred hhccchhhhHHHhhhccChhhhhhhcccCCCCCChhhhc----------cCcHHhh-----------h-hhccCCCCCCC
Q 048744 208 CCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTS----------KIPLELA-----------S-ALRIEREPVDD 265 (312)
Q Consensus 208 ccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee~~~ee~~----------~lp~~Lq-----------~-~l~~~re~e~d 265 (312)
.-+....- ..+..+.+++|+|---|..+- +++|.- ..-+... + -+=+.|+. |
T Consensus 518 L~~~~ld~--~~ll~~~~llp~L~~~L~~g~--~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqe--D 591 (708)
T PF05804_consen 518 LTIPDLDW--AQLLQEYNLLPWLKDLLKPGA--SEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQE--D 591 (708)
T ss_pred cccCCcCH--HHHHHhCCHHHHHHHHhCCCC--CChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCc--h
Confidence 55432211 223334578887544332211 122210 0111110 0 01134554 9
Q ss_pred hHHHHHHHHHHHHHhcCHhHHHHH-HhCCcch
Q 048744 266 PEIRIQALESIYLITLQEAGLRAF-WSVNGPR 296 (312)
Q Consensus 266 ~~Ir~~llE~Ll~L~~t~~gR~~l-r~~~vy~ 296 (312)
.++-..++-++++|.....+|+.+ ++-++..
T Consensus 592 dE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ 623 (708)
T PF05804_consen 592 DEIVLQILYVFYQLLFHEETREVLLKETEIPA 623 (708)
T ss_pred HHHHHHHHHHHHHHHcChHHHHHHHhccchHH
Confidence 999999999999999999999976 5455444
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.13 E-value=2.4e-09 Score=120.57 Aligned_cols=256 Identities=15% Similarity=0.135 Sum_probs=182.1
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGK 81 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~ 81 (312)
.++-|++||+++++++|..|+..+-.++.. ++++..|... +.|+.|+.+++.+ ..+.++|+.+|-|+|.++.-...
T Consensus 447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIiea--GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAA--GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 478899999999999999999999888864 6678777754 6899999999887 88999999999999987655555
Q ss_pred hh-hhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccc--hHHHhhhh----------------------hh------h
Q 048744 82 MV-QMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYG--ISSLLQVE----------------------DE------Q 130 (312)
Q Consensus 82 l~-~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~--~~~ll~~~----------------------~e------~ 130 (312)
++ +.|+|+.+++.+.+++......++..|+||+...+. +..+.... .. +
T Consensus 525 iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g 604 (2102)
T PLN03200 525 CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG 604 (2102)
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 55 569999999999998888889999999999754321 11111110 00 0
Q ss_pred --hhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCChhh-hhhhcccccchhhhhhhcccCCchhhHhhHHHHHHh
Q 048744 131 --IQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAG-RKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRN 207 (312)
Q Consensus 131 --~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~g-R~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikN 207 (312)
..| .++.|++++..+.. ..+...+.+++|++..... +..+++.+ .+..++..+.+.+..+|+.++.+|-|
T Consensus 605 ~~~~g-gL~~Lv~LL~sgs~----~ikk~Aa~iLsnL~a~~~d~~~avv~ag--aIpPLV~LLss~~~~v~keAA~AL~n 677 (2102)
T PLN03200 605 SAAND-ALRTLIQLLSSSKE----ETQEKAASVLADIFSSRQDLCESLATDE--IINPCIKLLTNNTEAVATQSARALAA 677 (2102)
T ss_pred hhccc-cHHHHHHHHcCCCH----HHHHHHHHHHHHHhcCChHHHHHHHHcC--CHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 001 36677777776643 3466778899998764433 55666553 56666666666777788889999999
Q ss_pred hhccchhhhHHHhhhccChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhHHH
Q 048744 208 CCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLR 287 (312)
Q Consensus 208 ccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~ 287 (312)
..-....+ +..-.-+.+.+|.|+-.|- . +|.+++...+++|..++...+|+.
T Consensus 678 L~~~~~~~-q~~~~v~~GaV~pL~~LL~-------------------------~--~d~~v~e~Al~ALanLl~~~e~~~ 729 (2102)
T PLN03200 678 LSRSIKEN-RKVSYAAEDAIKPLIKLAK-------------------------S--SSIEVAEQAVCALANLLSDPEVAA 729 (2102)
T ss_pred HHhCCCHH-HHHHHHHcCCHHHHHHHHh-------------------------C--CChHHHHHHHHHHHHHHcCchHHH
Confidence 88543332 1111122334444422221 1 278999999999999999999998
Q ss_pred HHHhCCcch
Q 048744 288 AFWSVNGPR 296 (312)
Q Consensus 288 ~lr~~~vy~ 296 (312)
.+...|+.+
T Consensus 730 ei~~~~~I~ 738 (2102)
T PLN03200 730 EALAEDIIL 738 (2102)
T ss_pred HHHhcCcHH
Confidence 777555544
No 6
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=98.97 E-value=1.6e-10 Score=83.02 Aligned_cols=33 Identities=6% Similarity=0.037 Sum_probs=31.1
Q ss_pred HHHHHhcCHhHHHHHHhCCcchhccccccCCCC
Q 048744 275 SIYLITLQEAGLRAFWSVNGPRLVHGSGTEDPS 307 (312)
Q Consensus 275 ~Ll~L~~t~~gR~~lr~~~vy~vlr~~~~~e~~ 307 (312)
||++||+|++||++||++|||+|||++|..|+.
T Consensus 1 ~LllL~~T~~GR~~lR~~~vY~IlRe~h~~E~d 33 (58)
T PF04064_consen 1 ALLLLCATREGREYLREKGVYPILRELHKWEED 33 (58)
T ss_pred CHhHHhccHHHHHHHHHcCchHHHHHHHhccCC
Confidence 689999999999999999999999999998864
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.6e-08 Score=96.53 Aligned_cols=217 Identities=18% Similarity=0.271 Sum_probs=167.8
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM 82 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l 82 (312)
.++-||+.+++.+++||..+...+-....+..+|..+.+..+.++++|+.|..++ ..+.-.|-.+|-||++|.+....+
T Consensus 209 ~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~ei 288 (550)
T KOG4224|consen 209 GLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREI 288 (550)
T ss_pred CchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHH
Confidence 4678999999999999999999998888888899988887667999999999999 788999999999999999999999
Q ss_pred hhhhHHHHHHHHHcCCCCh--hHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHH
Q 048744 83 VQMGMIKTAMDLLYKPDSS--ITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGS 160 (312)
Q Consensus 83 ~~~~~i~~lv~~i~~~~~~--~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~ 160 (312)
++.|.++.+++.+++|--+ +++-+| +-|++-++-+..-+.+. | ++.+|++.+.-++.+. ..+| ..+
T Consensus 289 v~ag~lP~lv~Llqs~~~plilasVaC--IrnisihplNe~lI~da------g-fl~pLVrlL~~~dnEe--iqch-Avs 356 (550)
T KOG4224|consen 289 VEAGSLPLLVELLQSPMGPLILASVAC--IRNISIHPLNEVLIADA------G-FLRPLVRLLRAGDNEE--IQCH-AVS 356 (550)
T ss_pred HhcCCchHHHHHHhCcchhHHHHHHHH--HhhcccccCcccceecc------c-chhHHHHHHhcCCchh--hhhh-HHH
Confidence 9999999999999887765 444444 57888888665544443 3 4789999998886542 2333 458
Q ss_pred HHHhhcC-ChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCC
Q 048744 161 ILVNISK-KEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNK 238 (312)
Q Consensus 161 vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~e 238 (312)
+|-|+.. ....+..|...+ -++++....-..+..-|.-+-++|--+++..... ..++. .+++| +|.|.-|.+
T Consensus 357 tLrnLAasse~n~~~i~esg--Ai~kl~eL~lD~pvsvqseisac~a~Lal~d~~k-~~lld--~gi~~-iLIp~t~s~ 429 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESG--AIPKLIELLLDGPVSVQSEISACIAQLALNDNDK-EALLD--SGIIP-ILIPWTGSE 429 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcC--chHHHHHHHhcCChhHHHHHHHHHHHHHhccccH-HHHhh--cCCcc-eeecccCcc
Confidence 9999987 777888888765 4666555443355556778888888888876665 23333 34555 456777754
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=9.4e-08 Score=91.38 Aligned_cols=256 Identities=18% Similarity=0.174 Sum_probs=199.4
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM 82 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l 82 (312)
.++.|..+-++...-||..|+.+|+.+|.+.++|+.+... +.+|-|+.+++.+ ..+..-+-+++-|+..|...++.|
T Consensus 168 aL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~a--G~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 168 ALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHA--GGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred chhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhcc--CCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 3566777556788899999999999999999999988653 6799999999888 888999999999999999999999
Q ss_pred hhhh--HHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHH
Q 048744 83 VQMG--MIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGS 160 (312)
Q Consensus 83 ~~~~--~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~ 160 (312)
++.+ .|+.+++...++.+...-.|.-.|-||+...+....+.+.+ .++-|++++ ++.+. -+-+++
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag-------~lP~lv~Ll-qs~~~-----plilas 312 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAG-------SLPLLVELL-QSPMG-----PLILAS 312 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcC-------CchHHHHHH-hCcch-----hHHHHH
Confidence 9874 99999999999999888888999999998888766666654 377888887 33221 234566
Q ss_pred HH--HhhcCChhhhhhhcccccchhhhhhhcccC-CchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCC
Q 048744 161 IL--VNISKKEAGRKILLDPKRGLLKQIVRQFDS-SNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGN 237 (312)
Q Consensus 161 vl--~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~-~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ 237 (312)
|+ .|+|-.|-.--.+.+.+ +++-|+..+.. +|..-+-.+++|+||++=.++... ..+-.+..+...+-|-+-||
T Consensus 313 VaCIrnisihplNe~lI~dag--fl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~-~~i~esgAi~kl~eL~lD~p 389 (550)
T KOG4224|consen 313 VACIRNISIHPLNEVLIADAG--FLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNV-SVIRESGAIPKLIELLLDGP 389 (550)
T ss_pred HHHHhhcccccCcccceeccc--chhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhh-HHHhhcCchHHHHHHHhcCC
Confidence 65 57998888777777754 66666665543 566567789999999998777663 55554544444444444442
Q ss_pred CCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhHHHHHHhCCcchhccccccCC
Q 048744 238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVHGSGTED 305 (312)
Q Consensus 238 ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~~lr~~~vy~vlr~~~~~e 305 (312)
-.+|..+--|+-+|+-...-|+++-.-|..++|=.|--+|
T Consensus 390 ----------------------------vsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~ 429 (550)
T KOG4224|consen 390 ----------------------------VSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSE 429 (550)
T ss_pred ----------------------------hhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCcc
Confidence 3345566678888999999999999999999999997765
No 9
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.77 E-value=2.3e-07 Score=93.87 Aligned_cols=243 Identities=18% Similarity=0.255 Sum_probs=166.0
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM 82 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l 82 (312)
-.+.|...|.++++.||+.|+..|..+....++...+.... ++++.++.++++. ..+++.|..+|.+++..+...+.+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~-~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN-ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc-cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 35678889999999999999999888776666655555443 7899999999998 899999999999999998888888
Q ss_pred hhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHH
Q 048744 83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSIL 162 (312)
Q Consensus 83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl 162 (312)
.+.+.+..+...+..+++...=-+..+++++++...... +.-.. .| .+.+++..+... +--- ... ..-++
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~---~~~~~--sg-ll~~ll~eL~~d-DiLv--qln-alell 226 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA---EAVVN--SG-LLDLLLKELDSD-DILV--QLN-ALELL 226 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH---HHHHh--cc-HHHHHHHHhcCc-cHHH--HHH-HHHHH
Confidence 888778888888877666666678899999987764332 22211 23 356777766552 2100 122 34889
Q ss_pred HhhcCChhhhhhhcccccchhhhhhhccc--CCch-hhHhhHHHHHH---hhhccchhhhHHHhhhccChhhhhhhcccC
Q 048744 163 VNISKKEAGRKILLDPKRGLLKQIVRQFD--SSNY-LRKKGVSGTIR---NCCFEAEHQLQNLLLISEFLWPALLLPVAG 236 (312)
Q Consensus 163 ~NlS~~~~gR~~~l~~~~~~l~~ll~~~~--~~s~-iRR~gva~~ik---NccF~~~~H~~~ll~~~~~~lp~lLlPlaG 236 (312)
..++..+.|++|+.+. |++++|...+. ..++ .+.--+.|.+| |.+.- ++..++. ..|.++--
T Consensus 227 ~~La~~~~g~~yL~~~--gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~---~~~~v~~----~~p~~~~~--- 294 (503)
T PF10508_consen 227 SELAETPHGLQYLEQQ--GIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV---SPQEVLE----LYPAFLER--- 294 (503)
T ss_pred HHHHcChhHHHHHHhC--CHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc---ChHHHHH----HHHHHHHH---
Confidence 9999999999999886 47777776542 2333 34444445442 22221 1111221 11111100
Q ss_pred CCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhHHHHH
Q 048744 237 NKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAF 289 (312)
Q Consensus 237 ~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~~l 289 (312)
+ .+.-.. .|+.++...+||+=.+|+|.+|++.|
T Consensus 295 -----------l-------~~~~~s--~d~~~~~~A~dtlg~igst~~G~~~L 327 (503)
T PF10508_consen 295 -----------L-------FSMLES--QDPTIREVAFDTLGQIGSTVEGKQLL 327 (503)
T ss_pred -----------H-------HHHhCC--CChhHHHHHHHHHHHHhCCHHHHHHH
Confidence 0 111111 39999999999999999999999988
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.73 E-value=2e-07 Score=97.18 Aligned_cols=184 Identities=17% Similarity=0.166 Sum_probs=147.0
Q ss_pred CCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhhhHHHHHHH
Q 048744 15 PSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMD 93 (312)
Q Consensus 15 ~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~lv~ 93 (312)
.+.++-+.|+..|+.++.+......+.+. ++++.|++++..+ ....-.++++|-+||-..+.++.+++.|+|+.++.
T Consensus 261 kQeqLlrv~~~lLlNLAed~~ve~kM~~~--~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~k 338 (708)
T PF05804_consen 261 KQEQLLRVAFYLLLNLAEDPRVELKMVNK--GIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLK 338 (708)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHhc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHH
Confidence 34566668899999999888777666543 7899999999877 77788899999999999999999999999999999
Q ss_pred HHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCChhhhh
Q 048744 94 LLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRK 173 (312)
Q Consensus 94 ~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~gR~ 173 (312)
.+..++....+.+.++|.|||-....+.+|.+.+ .+++|+..+..+. ...+.-.+|.|+|...++|.
T Consensus 339 Ll~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~G-------lIPkLv~LL~d~~------~~~val~iLy~LS~dd~~r~ 405 (708)
T PF05804_consen 339 LLPSENEDLVNVALRLLFNLSFDPELRSQMVSLG-------LIPKLVELLKDPN------FREVALKILYNLSMDDEARS 405 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCC-------CcHHHHHHhCCCc------hHHHHHHHHHHhccCHhhHH
Confidence 9998888899999999999999999888888865 3789998886542 24567899999999999999
Q ss_pred hhcccccchhhhhhhcc-cCCchhhHhhHHHHHHhhhccchhh
Q 048744 174 ILLDPKRGLLKQIVRQF-DSSNYLRKKGVSGTIRNCCFEAEHQ 215 (312)
Q Consensus 174 ~~l~~~~~~l~~ll~~~-~~~s~iRR~gva~~ikNccF~~~~H 215 (312)
.|...+ .++.++-.+ +.++..-...+++.+.|||-+..+-
T Consensus 406 ~f~~Td--cIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna 446 (708)
T PF05804_consen 406 MFAYTD--CIPQLMQMLLENSEEEVQLELIALLINLALNKRNA 446 (708)
T ss_pred HHhhcc--hHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHH
Confidence 887664 344444322 2233323456889999999886654
No 11
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.68 E-value=9.3e-07 Score=81.96 Aligned_cols=161 Identities=24% Similarity=0.251 Sum_probs=127.5
Q ss_pred cchHHHHHhccC-CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHH
Q 048744 2 ANELEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELA 79 (312)
Q Consensus 2 ~~~l~ELv~FL~-~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~ 79 (312)
+.+++.|+.+|. ...|-++..|+-.+-..++.+.+++.|... +.++-+..++.++ +.+...|+.+|.|+|.+.+..
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~--Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDL--GGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHc--CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 467999999999 468999999999999998889898888764 6799999999998 889999999999999998888
Q ss_pred HHhhhhhHHHHHHHHHcC-C-CChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhh
Q 048744 80 GKMVQMGMIKTAMDLLYK-P-DSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEH 157 (312)
Q Consensus 80 ~~l~~~~~i~~lv~~i~~-~-~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~ 157 (312)
..+- .+|..+++.+.. + ++..--.+..+|.|||..+.....+.. +++.++.++..|+.. . -.+
T Consensus 89 ~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~---------~i~~ll~LL~~G~~~---~-k~~ 153 (254)
T PF04826_consen 89 EQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN---------YIPDLLSLLSSGSEK---T-KVQ 153 (254)
T ss_pred HHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh---------hHHHHHHHHHcCChH---H-HHH
Confidence 7763 466666664433 2 455555678999999988875433221 478899999998543 2 245
Q ss_pred HHHHHHhhcCChhhhhhhcccc
Q 048744 158 VGSILVNISKKEAGRKILLDPK 179 (312)
Q Consensus 158 la~vl~NlS~~~~gR~~~l~~~ 179 (312)
...+|.|+|.-|...+.++..+
T Consensus 154 vLk~L~nLS~np~~~~~Ll~~q 175 (254)
T PF04826_consen 154 VLKVLVNLSENPDMTRELLSAQ 175 (254)
T ss_pred HHHHHHHhccCHHHHHHHHhcc
Confidence 6689999999999988888776
No 12
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.68 E-value=1.2e-07 Score=75.42 Aligned_cols=109 Identities=26% Similarity=0.337 Sum_probs=95.8
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCCh-hHHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNS-ELAG 80 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~-~~~~ 80 (312)
-++.|++||.++++++|..|+..|..++.. ++....+.+. ++++.++.++.++ +.++..|+.+|-|++.++ ....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEA--GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC--CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 367899999999999999999999999987 6676666553 6899999999988 899999999999999876 5566
Q ss_pred HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhc
Q 048744 81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLT 114 (312)
Q Consensus 81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT 114 (312)
.+.+.|+++.++..+.+++......++.+|.||+
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 6777799999999999998899999999999986
No 13
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.53 E-value=1.8e-06 Score=80.05 Aligned_cols=155 Identities=18% Similarity=0.276 Sum_probs=122.9
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC---ccchhhHHHHHHhcCCChhHHHH
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN---KEVSEPATEALVNLSQNSELAGK 81 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~---~~~~~~Al~~LiNLS~d~~~~~~ 81 (312)
++-+..+|.++++.||..|+..+-.++.+.+++..|- ..++.++..+... ......++.+|.|||.....+..
T Consensus 56 i~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik----~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~ 131 (254)
T PF04826_consen 56 ISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK----MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHM 131 (254)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhh
Confidence 5668889999999999999999999999999988773 3577777754332 56678899999999988887777
Q ss_pred hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHH
Q 048744 82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSI 161 (312)
Q Consensus 82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~v 161 (312)
+. +.|..++..+..++....-.+..+|.|||..+..+..+++.. .+..++.+|-+... .+.+-.+-.+
T Consensus 132 l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q-------~~~~~~~Lf~~~~~---~~~l~~~l~~ 199 (254)
T PF04826_consen 132 LA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQ-------VLSSFLSLFNSSES---KENLLRVLTF 199 (254)
T ss_pred HH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhcc-------chhHHHHHHccCCc---cHHHHHHHHH
Confidence 75 478888999988888888899999999999999888888864 25688888877643 2456667799
Q ss_pred HHhhcCChhhhhhh
Q 048744 162 LVNISKKEAGRKIL 175 (312)
Q Consensus 162 l~NlS~~~~gR~~~ 175 (312)
|.||+..-.-+.++
T Consensus 200 ~~ni~~~~~~~~~~ 213 (254)
T PF04826_consen 200 FENINENIKKEAYV 213 (254)
T ss_pred HHHHHHhhCcccce
Confidence 99997665555433
No 14
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=1.2e-05 Score=80.60 Aligned_cols=256 Identities=21% Similarity=0.242 Sum_probs=163.0
Q ss_pred hHHHHHhccC-CCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744 4 ELEELLGFLC-SPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA 79 (312)
Q Consensus 4 ~l~ELv~FL~-~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~ 79 (312)
-++.+|+||+ +.+|.+|-.|+-.|...+.. .+.-..+.. .++++.+++|+... ..+..+|+-+|=|+..| +..+
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~--agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVD--AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccccc--CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH
Confidence 4788999998 66899999998888877654 333222222 37899999999888 89999999999999987 5777
Q ss_pred HHhhhhhHHHHHHHHHcCCCC-hhHHHHHHHHHhhcCCccc------hHHHhhhh-------hhh-hh------------
Q 048744 80 GKMVQMGMIKTAMDLLYKPDS-SITRLLVMLLVNLTQLDYG------ISSLLQVE-------DEQ-IQ------------ 132 (312)
Q Consensus 80 ~~l~~~~~i~~lv~~i~~~~~-~~ad~a~mLLsNLT~~~~~------~~~ll~~~-------~e~-~~------------ 132 (312)
+.+++.|++..|+.++.++.. ..-..+.-.||||+|.... +..++... ++. ..
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 777888999999999998776 5667788899999999842 22222211 110 00
Q ss_pred ----------hhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhh-cCChhhhhhhcccccchhhhhhhccc-CCchhhHhh
Q 048744 133 ----------GLYVMKLVRSFCRSSSEASDDPFEHVGSILVNI-SKKEAGRKILLDPKRGLLKQIVRQFD-SSNYLRKKG 200 (312)
Q Consensus 133 ----------~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~Nl-S~~~~gR~~~l~~~~~~l~~ll~~~~-~~s~iRR~g 200 (312)
.-..++|++++.....+-....+. .+-|+ |....=.+.+++. |.+..+...+. ++....|+-
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLR----aiGNIvtG~d~QTq~vi~~--~~L~~l~~ll~~s~~~~ikkE 341 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALR----AIGNIVTGSDEQTQVVINS--GALPVLSNLLSSSPKESIKKE 341 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCcccccHHHh----hccceeeccHHHHHHHHhc--ChHHHHHHHhccCcchhHHHH
Confidence 001335555554443321111111 11221 2222222233333 24444444433 455556788
Q ss_pred HHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHh
Q 048744 201 VSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLIT 280 (312)
Q Consensus 201 va~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~ 280 (312)
++-||=|++=....|-+.++.. +++|.|+--+... |-++|+..+=||-.+|
T Consensus 342 AcW~iSNItAG~~~qiqaVida--~l~p~Li~~l~~~---------------------------ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 342 ACWTISNITAGNQEQIQAVIDA--NLIPVLINLLQTA---------------------------EFDIRKEAAWAISNLT 392 (514)
T ss_pred HHHHHHHhhcCCHHHHHHHHHc--ccHHHHHHHHhcc---------------------------chHHHHHHHHHHHhhc
Confidence 9999999999999887666653 6777664333221 4567777777777777
Q ss_pred cCHhHHH--HHHhCCcch
Q 048744 281 LQEAGLR--AFWSVNGPR 296 (312)
Q Consensus 281 ~t~~gR~--~lr~~~vy~ 296 (312)
++..=+. ||-+.|+.+
T Consensus 393 s~g~~~qi~yLv~~giI~ 410 (514)
T KOG0166|consen 393 SSGTPEQIKYLVEQGIIK 410 (514)
T ss_pred ccCCHHHHHHHHHcCCch
Confidence 6655333 777777655
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.36 E-value=5.6e-05 Score=76.59 Aligned_cols=275 Identities=21% Similarity=0.231 Sum_probs=186.3
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhcc-CccchhhHHHHHHhcC-CChhHHHHh
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSE-NKEVSEPATEALVNLS-QNSELAGKM 82 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d-~~~~~~~Al~~LiNLS-~d~~~~~~l 82 (312)
+.-++.-|.+++.+|.+.|+..|..++....+.+.++.. ..+..|..++.. ...++.-++.++++++ ..+...+.+
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~--~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDS--NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCc--chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 455778888999999999999999999999888888864 458899999888 4677888999999997 567888888
Q ss_pred hhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH--H
Q 048744 83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG--S 160 (312)
Q Consensus 83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la--~ 160 (312)
.+.|++..++..+.+.+....-.++.+|+.|+..+.|..-+.+.+ .+.+|.+.+.....+.....+...| .
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~g-------i~~~L~~~l~~~~~dp~~~~~~l~g~~~ 271 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQG-------IFDKLSNLLQDSEEDPRLSSLLLPGRMK 271 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCC-------HHHHHHHHHhccccCCcccchhhhhHHH
Confidence 888999999999999666566688999999999998877665543 3678888887764433112222122 5
Q ss_pred HHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHh-hhcc---------------
Q 048744 161 ILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLL-LISE--------------- 224 (312)
Q Consensus 161 vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll-~~~~--------------- 224 (312)
+|.|++..... -++..-..++..+...+++.++.-+..+..|+=+.|...+-- .+| ....
T Consensus 272 f~g~la~~~~~--~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~--~~L~~~~~~~~~~~l~~~~~~~~ 347 (503)
T PF10508_consen 272 FFGNLARVSPQ--EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK--QLLLQKQGPAMKHVLKAIGDAIK 347 (503)
T ss_pred HHHHHHhcChH--HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH--HHHHhhcchHHHHHHHHHHHHhc
Confidence 77888775222 122211124444555557788888999999999999654332 333 2111
Q ss_pred -----------ChhhhhhhcccCCCCCChhhhccCcHHhhh-hh----------ccCCCCCCChHHHHHHHHHHHHHhcC
Q 048744 225 -----------FLWPALLLPVAGNKVYKEEDTSKIPLELAS-AL----------RIEREPVDDPEIRIQALESIYLITLQ 282 (312)
Q Consensus 225 -----------~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~-~l----------~~~re~e~d~~Ir~~llE~Ll~L~~t 282 (312)
+-+..++ ..+++-.+++...+-.. +| .+ +--++| =|+||...+.-|..||+.
T Consensus 348 ~~~~~lk~r~l~al~~il---~~~~~~~~~~i~~~~~~-w~~~~~~~~~~~~l~~~~~qP--F~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 348 SGSTELKLRALHALASIL---TSGTDRQDNDILSITES-WYESLSGSPLSNLLMSLLKQP--FPELRCAAYRLLQALAAQ 421 (503)
T ss_pred CCchHHHHHHHHHHHHHH---hcCCCCchHHHHHHHHH-HHHHhcCCchHHHHHHHhcCC--chHHHHHHHHHHHHHhcC
Confidence 1222222 23333344444322222 11 11 123555 699999999999999999
Q ss_pred HhHHHHHHh-CCcchhc
Q 048744 283 EAGLRAFWS-VNGPRLV 298 (312)
Q Consensus 283 ~~gR~~lr~-~~vy~vl 298 (312)
+||-+.+-. -|..+.|
T Consensus 422 ~Wg~~~i~~~~gfie~l 438 (503)
T PF10508_consen 422 PWGQREICSSPGFIEYL 438 (503)
T ss_pred HHHHHHHHhCccHHhhh
Confidence 999886544 3444433
No 16
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=4.3e-05 Score=76.73 Aligned_cols=199 Identities=18% Similarity=0.211 Sum_probs=138.6
Q ss_pred hHHHHHhccCCCCH-HHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHH
Q 048744 4 ELEELLGFLCSPSP-SVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAG 80 (312)
Q Consensus 4 ~l~ELv~FL~~~~~-~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~ 80 (312)
.++.|..++..+.+ -..+.|+=.|..+....+.-..+-+. ..+++.|.+++... ..+..||.-+|.+||+. .+.-.
T Consensus 195 ~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v-~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq 273 (514)
T KOG0166|consen 195 ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV-APILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQ 273 (514)
T ss_pred chHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 47788999986543 45555555555555443221222222 25899999999887 89999999999999976 46666
Q ss_pred HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCcc-chHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744 81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDY-GISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG 159 (312)
Q Consensus 81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~-~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la 159 (312)
.+++.|.+.+++..+..++....-.|.+.+=|++.... ....+++.+ .++.|..++.+...++-+.. .+
T Consensus 274 ~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~-------~L~~l~~ll~~s~~~~ikkE---Ac 343 (514)
T KOG0166|consen 274 MVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSG-------ALPVLSNLLSSSPKESIKKE---AC 343 (514)
T ss_pred HHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcC-------hHHHHHHHhccCcchhHHHH---HH
Confidence 67778999999999999988887789999999866554 333444432 37788888876543321011 56
Q ss_pred HHHHhhcCC-hhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhh
Q 048744 160 SILVNISKK-EAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQ 215 (312)
Q Consensus 160 ~vl~NlS~~-~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H 215 (312)
-+++|++.- ++=.+.+++. +++..|+-.+++..-.-|+-++-+|.|+|-....+
T Consensus 344 W~iSNItAG~~~qiqaVida--~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~ 398 (514)
T KOG0166|consen 344 WTISNITAGNQEQIQAVIDA--NLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPE 398 (514)
T ss_pred HHHHHhhcCCHHHHHHHHHc--ccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHH
Confidence 888998763 2244466665 47777777666555556788999999999987755
No 17
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.14 E-value=1.6e-05 Score=63.05 Aligned_cols=112 Identities=27% Similarity=0.279 Sum_probs=88.4
Q ss_pred chHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHH
Q 048744 46 IALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSL 123 (312)
Q Consensus 46 ~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~l 123 (312)
+.++.|+.++.++ ......|+.+|.|++.+ +.....+.+.++++.++..+.++++.....++..|+||+.........
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 5789999999888 78999999999999987 888889988899999999999999999999999999999988543332
Q ss_pred hhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcC
Q 048744 124 LQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISK 167 (312)
Q Consensus 124 l~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~ 167 (312)
+.. .| .+..|++.+..++. .-..+...+|.|+++
T Consensus 87 ~~~-----~g-~l~~l~~~l~~~~~----~~~~~a~~~l~~l~~ 120 (120)
T cd00020 87 VLE-----AG-GVPKLVNLLDSSNE----DIQKNATGALSNLAS 120 (120)
T ss_pred HHH-----CC-ChHHHHHHHhcCCH----HHHHHHHHHHHHhhC
Confidence 221 11 36677777755521 235667788888763
No 18
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=97.51 E-value=0.00086 Score=69.69 Aligned_cols=196 Identities=21% Similarity=0.262 Sum_probs=138.5
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChh---H
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSE---L 78 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~---~ 78 (312)
+++|.|++|.+..+.++..|..++.-+.-. ...|..+-+- +-|+.|+.|+... ..+.+.|.-||=||+-... .
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrql--ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQL--GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHh--ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 689999999999999999999999888766 4444444433 4588888888777 8899999999999985432 3
Q ss_pred HHHhhhhhHHHHHHHHHcC-CCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCC---CC--C-
Q 048744 79 AGKMVQMGMIKTAMDLLYK-PDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSS---EA--S- 151 (312)
Q Consensus 79 ~~~l~~~~~i~~lv~~i~~-~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~---~~--~- 151 (312)
.-.|...+-|..++..++. .+......+.-+|-|||.+|.-+..+++- .+..|.+....+-. +. +
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~--------al~tLt~~vI~P~Sgw~~~~~~~ 383 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS--------ALSTLTDNVIIPHSGWEEEPAPR 383 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH--------HHHHHHHhhcccccccCCCCccc
Confidence 4444555889999999886 55678889999999999998644333331 24445444433222 10 1
Q ss_pred ----CCchhhHHHHHHhhcC-Chhhhhhhcccccchhhhhhhccc------CCchhhHhhHHHHHHhhhc
Q 048744 152 ----DDPFEHVGSILVNISK-KEAGRKILLDPKRGLLKQIVRQFD------SSNYLRKKGVSGTIRNCCF 210 (312)
Q Consensus 152 ----~~~~~~la~vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~------~~s~iRR~gva~~ikNccF 210 (312)
..-+--.+.+|-|+|+ -.++|+.|-+-. |++..|++.+. +-+.-+=+..+-++||+..
T Consensus 384 ~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~-GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSY 452 (717)
T KOG1048|consen 384 KAEDSTVFRNVTGCLRNLSSAGQEAREQMRECD-GLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSY 452 (717)
T ss_pred ccccceeeehhhhhhccccchhHHHHHHHhhcc-chHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCc
Confidence 1223346788999998 889999986553 68888887532 2334445777788888875
No 19
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.024 Score=56.70 Aligned_cols=259 Identities=21% Similarity=0.178 Sum_probs=167.6
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC--ccchhhHHHHHHhcCCChhHHHHh
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN--KEVSEPATEALVNLSQNSELAGKM 82 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~--~~~~~~Al~~LiNLS~d~~~~~~l 82 (312)
++-|+.......|++|+..+..++.+|=..-.|....+ .+++|.+..++.++ +++ |+..|.-+|-|..+....
T Consensus 347 veKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~--~GllP~l~~ll~~d~~~~i---A~~~lYh~S~dD~~K~Mf 421 (791)
T KOG1222|consen 347 VEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVN--GGLLPHLASLLDSDTKHGI---ALNMLYHLSCDDDAKAMF 421 (791)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhh--ccchHHHHHHhCCcccchh---hhhhhhhhccCcHHHHHH
Confidence 56688888889999999999999999977666666544 37999999999877 333 789999999999989888
Q ss_pred hhhhHHHHHHHHHcCCCChhHHHHHH-HHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHH
Q 048744 83 VQMGMIKTAMDLLYKPDSSITRLLVM-LLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSI 161 (312)
Q Consensus 83 ~~~~~i~~lv~~i~~~~~~~ad~a~m-LLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~v 161 (312)
.-.++|..+|+.+......-.|++.. +--||+-...++.-+.. |..+.-||+.-.+..+ . .|-.+
T Consensus 422 ayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvce-------GqgL~~LM~ra~k~~D----~---lLmK~ 487 (791)
T KOG1222|consen 422 AYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCE-------GQGLDLLMERAIKSRD----L---LLMKV 487 (791)
T ss_pred HHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEec-------CcchHHHHHHHhcccc----h---HHHHH
Confidence 88899999999877655544555443 44688888776542222 2247888887776632 1 36789
Q ss_pred HHhhcCChhhhh-hhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhh---hhhcccCC
Q 048744 162 LVNISKKEAGRK-ILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPA---LLLPVAGN 237 (312)
Q Consensus 162 l~NlS~~~~gR~-~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~---lLlPlaG~ 237 (312)
+.|+||+...-+ .|++= .|-+..++.--+ +..==-...||+-|+..-.-. +..+..+.++.|+ .|.|=|.-
T Consensus 488 vRniSqHeg~tqn~Fidy-vgdLa~i~~nd~--~E~F~~EClGtlanL~v~dld--w~~ilq~~~LvPw~k~~L~pga~e 562 (791)
T KOG1222|consen 488 VRNISQHEGATQNMFIDY-VGDLAGIAKNDN--SESFGLECLGTLANLKVTDLD--WAKILQSENLVPWMKTQLQPGADE 562 (791)
T ss_pred HHHhhhccchHHHHHHHH-HHHHHHHhhcCc--hHHHHHHHHHHHhhcccCCCC--HHHHHhhccccHHHHHhhcCCccc
Confidence 999999977444 34431 122222222211 111223356677777652222 2456667788887 57776654
Q ss_pred CCCChhh------------hcc-------CcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhHHHHHHh
Q 048744 238 KVYKEED------------TSK-------IPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWS 291 (312)
Q Consensus 238 ee~~~ee------------~~~-------lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~~lr~ 291 (312)
+++--+- -.. .|.-++ +-+.++. |.++-..++--++|.-.....|++|-+
T Consensus 563 ddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlie--LL~a~Qe--DDEfV~QiiyVF~Q~l~He~tr~~mik 631 (791)
T KOG1222|consen 563 DDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIE--LLQACQE--DDEFVVQIIYVFLQFLKHELTRRLMIK 631 (791)
T ss_pred hhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHH--HHHhhcc--cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4431111 110 111111 1123333 778888888888888877888887654
No 20
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.82 E-value=0.011 Score=56.96 Aligned_cols=214 Identities=19% Similarity=0.215 Sum_probs=139.2
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchh-hhhhcccchHHHHHHhhccC-c--cchhhHHHHHHhcCCC--h
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQ-SLSKYSKIALPSLARLLSEN-K--EVSEPATEALVNLSQN--S 76 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~-~i~~~~~~~i~~L~~L~~d~-~--~~~~~Al~~LiNLS~d--~ 76 (312)
.+++-+|++|++++.+||.+|+=.|=...|..++.. .+.+. +++..|+.++... + ...++|-=.|-||+.- |
T Consensus 157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~--galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP 234 (526)
T COG5064 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQC--GALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNP 234 (526)
T ss_pred CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhc--CchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCC
Confidence 468889999999999999999999988888866554 55554 6788887776544 4 5677888889999852 2
Q ss_pred --hHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchH-HHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCC
Q 048744 77 --ELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGIS-SLLQVEDEQIQGLYVMKLVRSFCRSSSEASDD 153 (312)
Q Consensus 77 --~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~-~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~ 153 (312)
..... ...++.|.+.|-..++...-.||-.+|=|+-.+.-+. ++++.+. ..+|++++...+..-...
T Consensus 235 ~P~w~~i---sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~-------~~RLvElLs~~sa~iqtP 304 (526)
T COG5064 235 PPDWSNI---SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGI-------PGRLVELLSHESAKIQTP 304 (526)
T ss_pred CCchHHH---HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCC-------cHHHHHHhcCccccccCH
Confidence 21111 2467888888887777777789999999987774333 4555442 348999998865432111
Q ss_pred chhhHHHHHHhh-cCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhh
Q 048744 154 PFEHVGSILVNI-SKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLL 232 (312)
Q Consensus 154 ~~~~la~vl~Nl-S~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLl 232 (312)
.+.- ..|+ |....--+.+++- |.++.+.+.++++...-|+.+--||-|+.-....|.+..+. -|+.|-|.-
T Consensus 305 alR~----vGNIVTG~D~QTqviI~~--G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid--~nliPpLi~ 376 (526)
T COG5064 305 ALRS----VGNIVTGSDDQTQVIINC--GALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVID--ANLIPPLIH 376 (526)
T ss_pred HHHh----hcCeeecCccceehheec--ccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHh--cccchHHHH
Confidence 1111 2222 2222222223332 46677777677766667777888999998888888543333 355555444
Q ss_pred cccC
Q 048744 233 PVAG 236 (312)
Q Consensus 233 PlaG 236 (312)
-+..
T Consensus 377 lls~ 380 (526)
T COG5064 377 LLSS 380 (526)
T ss_pred HHHH
Confidence 3333
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=96.81 E-value=0.02 Score=56.56 Aligned_cols=192 Identities=15% Similarity=0.119 Sum_probs=131.6
Q ss_pred HHHHHhccCC-CCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCc--cchhhHHHHH-------H-hcC
Q 048744 5 LEELLGFLCS-PSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENK--EVSEPATEAL-------V-NLS 73 (312)
Q Consensus 5 l~ELv~FL~~-~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~--~~~~~Al~~L-------i-NLS 73 (312)
..+|++.|.+ -|++++..-.+.+-....++.-+-.+.++ +++.++..++...+ .-..|++..+ + =++
T Consensus 225 ~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~--gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlllt 302 (604)
T KOG4500|consen 225 VFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQN--GLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLT 302 (604)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhc--chHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhc
Confidence 4578888885 69999999999999888777665555443 68888888776632 2233333322 1 223
Q ss_pred CChhHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCC
Q 048744 74 QNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDD 153 (312)
Q Consensus 74 ~d~~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~ 153 (312)
.|++...--.+..++.++++-+.+.+...--...-.+.|.+|.+..|..+.+.+ .+.+|++++.+........
T Consensus 303 GDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~-------~~nkL~~~l~~~~~vdgnV 375 (604)
T KOG4500|consen 303 GDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKD-------FLNKLISCLMQEKDVDGNV 375 (604)
T ss_pred CchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHH-------HHHHHHHHHHHhcCCCccc
Confidence 455444333333589999999998887777677888999999999999988853 4789999998854322112
Q ss_pred ch-hhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHh
Q 048744 154 PF-EHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRN 207 (312)
Q Consensus 154 ~~-~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikN 207 (312)
.. |-.-+.|.|+-=-...|..|+.. |+.+.++++++..++.----..||+|=
T Consensus 376 ~~qhA~lsALRnl~IPv~nka~~~~a--GvteaIL~~lk~~~ppv~fkllgTlrM 428 (604)
T KOG4500|consen 376 ERQHACLSALRNLMIPVSNKAHFAPA--GVTEAILLQLKLASPPVTFKLLGTLRM 428 (604)
T ss_pred hhHHHHHHHHHhccccCCchhhcccc--chHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 23 33468888988777788888875 588999998875444434444555553
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.023 Score=56.85 Aligned_cols=160 Identities=15% Similarity=0.218 Sum_probs=125.2
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhh
Q 048744 6 EELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQ 84 (312)
Q Consensus 6 ~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~ 84 (312)
.=||.-|...|.++-......|..+|--.+|+...-+. +++..|+++..-+ +...+-.+..|.|||-|...+..++.
T Consensus 307 ~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~--~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~ 384 (791)
T KOG1222|consen 307 AMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQN--GIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVN 384 (791)
T ss_pred HHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhc--cHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhh
Confidence 34677777778888888899999999889998776554 6899999999888 77888899999999999999999999
Q ss_pred hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHh
Q 048744 85 MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVN 164 (312)
Q Consensus 85 ~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~N 164 (312)
.|.++.++..+.+.+.. ..|.-.|--+|-.+. ++.++...+ .+..|++....+.... ...+-+ ++-.|
T Consensus 385 ~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~-~K~MfayTd------ci~~lmk~v~~~~~~~--vdl~li-a~ciN 452 (791)
T KOG1222|consen 385 GGLLPHLASLLDSDTKH--GIALNMLYHLSCDDD-AKAMFAYTD------CIKLLMKDVLSGTGSE--VDLALI-ALCIN 452 (791)
T ss_pred ccchHHHHHHhCCcccc--hhhhhhhhhhccCcH-HHHHHHHHH------HHHHHHHHHHhcCCce--ecHHHH-HHHHH
Confidence 99999999999765542 235555666887775 677777654 3788998888775432 234444 66689
Q ss_pred hcCChhhhhhhcccc
Q 048744 165 ISKKEAGRKILLDPK 179 (312)
Q Consensus 165 lS~~~~gR~~~l~~~ 179 (312)
++--+++-+.++.-+
T Consensus 453 l~lnkRNaQlvceGq 467 (791)
T KOG1222|consen 453 LCLNKRNAQLVCEGQ 467 (791)
T ss_pred HHhccccceEEecCc
Confidence 999998888888754
No 23
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=96.70 E-value=0.0081 Score=66.36 Aligned_cols=180 Identities=18% Similarity=0.185 Sum_probs=113.0
Q ss_pred hHHHHHhccC--CC-------CHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhc
Q 048744 4 ELEELLGFLC--SP-------SPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNL 72 (312)
Q Consensus 4 ~l~ELv~FL~--~~-------~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNL 72 (312)
+|.|||+.=| +. ...+|+.|.-.|..||=. ..||..|... +++++++|.-+... ...-.--...|-||
T Consensus 343 AIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~-rgfMeavVAQL~s~peeL~QV~AsvLRNL 421 (2195)
T KOG2122|consen 343 AIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ-RGFMEAVVAQLISAPEELLQVYASVLRNL 421 (2195)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh-hhHHHHHHHHHhcChHHHHHHHHHHHHhc
Confidence 4777877655 22 357999999999999955 5577778775 48999999888666 46666677899999
Q ss_pred CC--ChhHHHHhhhhhHHHHHHHH-HcCCCChhHHHHHHHHHhhcCCc-cchHHHhhhhhhhhhhhhHHHHHHHHhcCCC
Q 048744 73 SQ--NSELAGKMVQMGMIKTAMDL-LYKPDSSITRLLVMLLVNLTQLD-YGISSLLQVEDEQIQGLYVMKLVRSFCRSSS 148 (312)
Q Consensus 73 S~--d~~~~~~l~~~~~i~~lv~~-i~~~~~~~ad~a~mLLsNLT~~~-~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~ 148 (312)
|+ |....+.|-+.|-|..|+.. +.+.++....-..-.|=||+.+- ++...|.+.. | .+.-||..+.-...
T Consensus 422 SWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVD-----G-ALaFLVg~LSY~~q 495 (2195)
T KOG2122|consen 422 SWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVD-----G-ALAFLVGTLSYEGQ 495 (2195)
T ss_pred cccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhccc-----c-hHHHHHhhccccCC
Confidence 95 55555555555777766664 44444344445566677897765 5555666542 2 46666666653221
Q ss_pred CCCCCchhhHHHHHHhhcCChhhhh-h--hcccccchhhhhhhccc
Q 048744 149 EASDDPFEHVGSILVNISKKEAGRK-I--LLDPKRGLLKQIVRQFD 191 (312)
Q Consensus 149 ~~~~~~~~~la~vl~NlS~~~~gR~-~--~l~~~~~~l~~ll~~~~ 191 (312)
-+--+-.+--+.||-|+|++-..+. | ++...+ .|+.||.+++
T Consensus 496 s~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~N-CLq~LLQ~LK 540 (2195)
T KOG2122|consen 496 SNTLAIIESAGGILRNVSSLIATCEDYRQILRRHN-CLQTLLQHLK 540 (2195)
T ss_pred cchhhhhhcCccHHHHHHhHhhccchHHHHHHHhh-HHHHHHHHhh
Confidence 1111223445677888877766554 2 444433 4555555433
No 24
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.58 E-value=0.016 Score=43.62 Aligned_cols=83 Identities=25% Similarity=0.354 Sum_probs=62.2
Q ss_pred HHHHHhcc-CCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744 5 LEELLGFL-CSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM 82 (312)
Q Consensus 5 l~ELv~FL-~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l 82 (312)
++.|+..| +++++.||..|+..+..+ . . +.+++.|..++.|. +.++..|+.+|-++.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~-~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------G-D-PEAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------T-H-HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------C-C-HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57899999 799999999999888733 1 1 14688888888888 889999999998872
Q ss_pred hhhhHHHHHHHHHcCCCChh-HHHHHHH
Q 048744 83 VQMGMIKTAMDLLYKPDSSI-TRLLVML 109 (312)
Q Consensus 83 ~~~~~i~~lv~~i~~~~~~~-ad~a~mL 109 (312)
+...++.+.+.+.+++... ...|..-
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~a 86 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEA 86 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhh
Confidence 3467888888888876654 3334433
No 25
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.50 E-value=0.049 Score=51.75 Aligned_cols=196 Identities=14% Similarity=0.078 Sum_probs=117.1
Q ss_pred HHhccC--CCCHHHHHHHHHHHHhcCCCccchhhhhhc----cc-chHHHHHHhhccC-ccchhhHHHHHHhcCCChhHH
Q 048744 8 LLGFLC--SPSPSVKKAAVDIVRGLTGSEDGLQSLSKY----SK-IALPSLARLLSEN-KEVSEPATEALVNLSQNSELA 79 (312)
Q Consensus 8 Lv~FL~--~~~~~vR~~Al~~llgls~~~~~~~~i~~~----~~-~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~ 79 (312)
++.+|+ .+++++.+..+..+-.+-...+.+..++.. .+ .+...+.+++..+ ..+...|..+|.+|.......
T Consensus 60 ~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~ 139 (312)
T PF03224_consen 60 FLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKR 139 (312)
T ss_dssp --HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT-
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 344444 479999999999998877665555544421 11 2566777777665 889999999999996543333
Q ss_pred HHhhhhhHHHHHHHHHcC----CCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCC--CCCC
Q 048744 80 GKMVQMGMIKTAMDLLYK----PDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSE--ASDD 153 (312)
Q Consensus 80 ~~l~~~~~i~~lv~~i~~----~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~--~~~~ 153 (312)
..-...+++..+++.+.+ ++......+...|++|.+.++....+++.+ .+..|++.+.....+ +...
T Consensus 140 ~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~-------~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 140 SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSN-------GVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHH-------HHHHHHHHHH---------HH
T ss_pred ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcC-------cHHHHHHHHHhhcccCCCCch
Confidence 332225667777777765 223455789999999999998777766621 256666666322111 1111
Q ss_pred c-hhhHHHHHHhhcCChhhhhhhcccccchhhhhhhccc--CCchhhHhhHHHHHHhhhccch
Q 048744 154 P-FEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFD--SSNYLRKKGVSGTIRNCCFEAE 213 (312)
Q Consensus 154 ~-~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~--~~s~iRR~gva~~ikNccF~~~ 213 (312)
. .-|+..++=-+|=.+++-..|.+.. ++..++.... .+-.+ =|-+.+|+|||+=...
T Consensus 213 Ql~Y~~ll~lWlLSF~~~~~~~~~~~~--~i~~L~~i~~~~~KEKv-vRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 213 QLQYQALLCLWLLSFEPEIAEELNKKY--LIPLLADILKDSIKEKV-VRVSLAILRNLLSKAP 272 (312)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHTTS--HHHHHHHHHHH--SHHH-HHHHHHHHHHTTSSSS
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHhccc--hHHHHHHHHHhcccchH-HHHHHHHHHHHHhccH
Confidence 1 2334577888999999999998876 5655555432 12222 2457899999996554
No 26
>PTZ00429 beta-adaptin; Provisional
Probab=96.27 E-value=0.25 Score=52.62 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=77.3
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhHHHHhh
Q 048744 6 EELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSELAGKMV 83 (312)
Q Consensus 6 ~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~~~~l~ 83 (312)
.-+..-+.++||-||..|+..+.++-... +.. .+++.+++++.|. +.++|.|+.|+..+-. +++ .+.
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i~e---~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~ 176 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRVSS-----VLE---YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFY 176 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----HHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---ccc
Confidence 34566777889999999999888874322 222 4677889999998 8999999999999864 443 222
Q ss_pred hhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744 84 QMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD 117 (312)
Q Consensus 84 ~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~ 117 (312)
+.++++.+.+++.|.++...-.|..+|.-+....
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 3488999999999999988888989888886543
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.26 E-value=0.099 Score=52.42 Aligned_cols=243 Identities=20% Similarity=0.252 Sum_probs=124.8
Q ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC-CChhHHHHhhh
Q 048744 7 ELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS-QNSELAGKMVQ 84 (312)
Q Consensus 7 ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS-~d~~~~~~l~~ 84 (312)
-+..-|.++|+.+|..|+..+..+. +++ +.. .+++.+.+++.+. +.+++.|+.|+..+. .+|+....
T Consensus 83 ~l~kdl~~~n~~~~~lAL~~l~~i~-~~~----~~~---~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~--- 151 (526)
T PF01602_consen 83 SLQKDLNSPNPYIRGLALRTLSNIR-TPE----MAE---PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED--- 151 (526)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHH--SHH----HHH---HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG---
T ss_pred HHHHhhcCCCHHHHHHHHhhhhhhc-ccc----hhh---HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH---
Confidence 3455577888888888888888876 222 221 4677777887777 778888888888886 45554333
Q ss_pred hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccc----hHHHhhhhh---hhhhhhhHHHHHHHHhcCCCCCCCCc--h
Q 048744 85 MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYG----ISSLLQVED---EQIQGLYVMKLVRSFCRSSSEASDDP--F 155 (312)
Q Consensus 85 ~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~----~~~ll~~~~---e~~~~~~l~~Ll~~f~~~~~~~~~~~--~ 155 (312)
++++.+...+.|+++...-.|+.++..+...+.. ...++.... .....+....+++.+..-........ .
T Consensus 152 -~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~ 230 (526)
T PF01602_consen 152 -ELIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKN 230 (526)
T ss_dssp -GHHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHH
T ss_pred -HHHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHH
Confidence 2566677777777777777777777777222222 222322211 11122223355555554322111111 1
Q ss_pred hhHHHHHHhhc------CChhhhhhh-ccccc----chhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhcc
Q 048744 156 EHVGSILVNIS------KKEAGRKIL-LDPKR----GLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISE 224 (312)
Q Consensus 156 ~~la~vl~NlS------~~~~gR~~~-l~~~~----~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~ 224 (312)
.++..++.-++ .....|-++ +.+.. ..+..+..++.++++.-|--+..+|...+-.. + +.+.....
T Consensus 231 ~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~-~~v~~~~~ 307 (526)
T PF01602_consen 231 RIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--P-PAVFNQSL 307 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--H-HHHGTHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--c-hhhhhhhh
Confidence 22222222111 001111111 01111 12333444445566656666777777777644 1 11111000
Q ss_pred ChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhHHHHHHhCCcc
Q 048744 225 FLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGP 295 (312)
Q Consensus 225 ~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~~lr~~~vy 295 (312)
. +- .+. .+ +|+.||...++.|+.||+.....+.+.+..-|
T Consensus 308 ~-~~--------------------------~l~--~~--~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~ 347 (526)
T PF01602_consen 308 I-LF--------------------------FLL--YD--DDPSIRKKALDLLYKLANESNVKEILDELLKY 347 (526)
T ss_dssp H-HH--------------------------HHH--CS--SSHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred h-hh--------------------------eec--CC--CChhHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 0 00 011 12 37889999999999998888877766655433
No 28
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.22 E-value=0.021 Score=50.88 Aligned_cols=124 Identities=21% Similarity=0.218 Sum_probs=87.6
Q ss_pred ccchhhHHHHHHhcCCChhHHHHhhhh--h--------------HHHHHHHHHcC------CCChhHHHHHHHHHhhcCC
Q 048744 59 KEVSEPATEALVNLSQNSELAGKMVQM--G--------------MIKTAMDLLYK------PDSSITRLLVMLLVNLTQL 116 (312)
Q Consensus 59 ~~~~~~Al~~LiNLS~d~~~~~~l~~~--~--------------~i~~lv~~i~~------~~~~~ad~a~mLLsNLT~~ 116 (312)
...+.-+...|-|||..+..+..+++. . ++..|++.... .....-+..+.+++|+|+.
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 455677888999999988888876642 3 67788888776 2234668899999999999
Q ss_pred ccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCChhhhhhhcccc-cchhh-hhhhc
Q 048744 117 DYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPK-RGLLK-QIVRQ 189 (312)
Q Consensus 117 ~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~gR~~~l~~~-~~~l~-~ll~~ 189 (312)
++|+.-+++.... .+ .+.+|+-.+...+..- -.-+|+++-|++=-.+.-.|++.++ -.++. .|+|.
T Consensus 89 ~~gR~~~l~~~~~--~~-~l~kLl~ft~~~s~iR----R~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 89 PEGRQFFLDPQRY--DG-PLQKLLPFTEHKSVIR----RGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred HHHHHHHhCchhh--hh-HHHHHHHHhccCcHHH----HHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 9999888765321 11 2567776665542211 1238899999999988889999986 34544 45554
No 29
>PF05536 Neurochondrin: Neurochondrin
Probab=96.21 E-value=0.028 Score=57.66 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHhcCCCccchhhhhhccc--chHHHHHHhhccC-c-cchhhHHHHHHhcCCChhHHHHhhhhhHHHH
Q 048744 15 PSPSVKKAAVDIVRGLTGSEDGLQSLSKYSK--IALPSLARLLSEN-K-EVSEPATEALVNLSQNSELAGKMVQMGMIKT 90 (312)
Q Consensus 15 ~~~~vR~~Al~~llgls~~~~~~~~i~~~~~--~~i~~L~~L~~d~-~-~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~ 90 (312)
+...-+..|+..|-.++..++- ...++ .-||.|+..+... . ....+|+.||.++++.+..++.+++.|.|..
T Consensus 69 ~~~~~~~LavsvL~~f~~~~~~----a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~ 144 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCRDPEL----ASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPA 144 (543)
T ss_pred CHHHHHHHHHHHHHHHcCChhh----hcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHH
Confidence 4567889999999999985543 22211 3588888888666 5 8899999999999999999999999999999
Q ss_pred HHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744 91 AMDLLYKPDSSITRLLVMLLVNLTQLD 117 (312)
Q Consensus 91 lv~~i~~~~~~~ad~a~mLLsNLT~~~ 117 (312)
+++.+.+ ++...|.+..+|.|+....
T Consensus 145 L~ei~~~-~~~~~E~Al~lL~~Lls~~ 170 (543)
T PF05536_consen 145 LCEIIPN-QSFQMEIALNLLLNLLSRL 170 (543)
T ss_pred HHHHHHh-CcchHHHHHHHHHHHHHhc
Confidence 9999988 6667889999999876543
No 30
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.055 Score=51.41 Aligned_cols=117 Identities=19% Similarity=0.234 Sum_probs=85.6
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhh
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMV 83 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~ 83 (312)
++.|.+.+.+..+ -+.|+.+++.++....-++.+.+ .+++-+.-.+-+. ...+.-+...|.|||.++..+..+.
T Consensus 46 lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~---~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll 120 (353)
T KOG2973|consen 46 LKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQ---DLLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALL 120 (353)
T ss_pred HHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHH
Confidence 6678888887666 56788899999988777766654 2666666666666 8899999999999999987777665
Q ss_pred hh------hHHHHHHHHHcCCCC-h--hHHHHHHHHHhhcCCccchHHHhhh
Q 048744 84 QM------GMIKTAMDLLYKPDS-S--ITRLLVMLLVNLTQLDYGISSLLQV 126 (312)
Q Consensus 84 ~~------~~i~~lv~~i~~~~~-~--~ad~a~mLLsNLT~~~~~~~~ll~~ 126 (312)
.. ..+..++...+++.- . --+..+-+++|||+.+.|..-++..
T Consensus 121 ~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~ 172 (353)
T KOG2973|consen 121 TNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEP 172 (353)
T ss_pred HhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcch
Confidence 31 356667776666443 2 2246778999999999987655543
No 31
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.74 E-value=0.041 Score=52.28 Aligned_cols=135 Identities=21% Similarity=0.230 Sum_probs=100.2
Q ss_pred hHHHHHhccCC----CCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhh------ccC--ccchhhHHHHHHh
Q 048744 4 ELEELLGFLCS----PSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL------SEN--KEVSEPATEALVN 71 (312)
Q Consensus 4 ~l~ELv~FL~~----~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~------~d~--~~~~~~Al~~LiN 71 (312)
.+.-++++|++ ++.+++..|+..+..+...++.|..+++. +.++.|..++ +.. .+..-.++.|+--
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~--~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWl 224 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS--NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWL 224 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH--HHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc--CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH
Confidence 45667777774 45677899999999999999999888774 5688888887 222 5677889999999
Q ss_pred cCCChhHHHHhhhhhHHHHHHHHHcC-CCChhHHHHHHHHHhhcCCcc--chHHHhhhhhhhhhhhhHHHHHHHHhcCCC
Q 048744 72 LSQNSELAGKMVQMGMIKTAMDLLYK-PDSSITRLLVMLLVNLTQLDY--GISSLLQVEDEQIQGLYVMKLVRSFCRSSS 148 (312)
Q Consensus 72 LS~d~~~~~~l~~~~~i~~lv~~i~~-~~~~~ad~a~mLLsNLT~~~~--~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~ 148 (312)
||=++.+++.+.+.++|..+++.+.+ .+++....+.+.|-||..... .+..|+.. .+.++++.+....+
T Consensus 225 LSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~--------~~l~~l~~L~~rk~ 296 (312)
T PF03224_consen 225 LSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLC--------GLLKTLQNLSERKW 296 (312)
T ss_dssp HTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH---------HHHHHHHHHSS--
T ss_pred HhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHc--------cHHHHHHHHhcCCC
Confidence 99999999999998999999998875 677999999999999987776 45454442 25677777766543
No 32
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=95.69 E-value=0.029 Score=54.05 Aligned_cols=136 Identities=20% Similarity=0.268 Sum_probs=107.2
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHh-cCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHHHh
Q 048744 6 EELLGFLCSPSPSVKKAAVDIVRG-LTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAGKM 82 (312)
Q Consensus 6 ~ELv~FL~~~~~~vR~~Al~~llg-ls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~~l 82 (312)
..|++.|+++...|+.-|+..+=. .||++..-+.|... ++++++..+++.. ..+.|.|.=.+-|+++- .+-...+
T Consensus 288 ~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~--G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqav 365 (526)
T COG5064 288 GRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINC--GALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAV 365 (526)
T ss_pred HHHHHHhcCccccccCHHHHhhcCeeecCccceehheec--ccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHH
Confidence 458999999999998888887754 46666665666543 7899999999888 78999999999999975 4556667
Q ss_pred hhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcC
Q 048744 83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRS 146 (312)
Q Consensus 83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~ 146 (312)
++.+.++.|+..+..-+......||-..||.|..--+...++.++.+ .| .|.+|-+++.-.
T Consensus 366 id~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~--qG-~IkpLc~~L~~~ 426 (526)
T COG5064 366 IDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVS--QG-FIKPLCDLLDVV 426 (526)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHH--cc-chhHHHHHHhcc
Confidence 78899999999999888888889999999999888777777777653 34 456666665443
No 33
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=95.59 E-value=0.053 Score=56.72 Aligned_cols=165 Identities=20% Similarity=0.156 Sum_probs=119.6
Q ss_pred HhccC-CCCHHHHHHHHHHHHhcCCCcc-----chhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHH
Q 048744 9 LGFLC-SPSPSVKKAAVDIVRGLTGSED-----GLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGK 81 (312)
Q Consensus 9 v~FL~-~~~~~vR~~Al~~llgls~~~~-----~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~ 81 (312)
+.+|. +.|+.+-+.++.+|..+|+..- -+..++... ..++.|+.++..+ ..+++.+..+|-|||-|...++.
T Consensus 524 l~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~ke-kgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~l 602 (717)
T KOG1048|consen 524 LLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKE-KGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKEL 602 (717)
T ss_pred HHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhc-cCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhh
Confidence 44555 6788888888888888887632 122233333 4588999999777 89999999999999999999998
Q ss_pred hhhhhHHHHHHHHHcCCCC------hhHHHHHHHHHhhc-CCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCc
Q 048744 82 MVQMGMIKTAMDLLYKPDS------SITRLLVMLLVNLT-QLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDP 154 (312)
Q Consensus 82 l~~~~~i~~lv~~i~~~~~------~~ad~a~mLLsNLT-~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~ 154 (312)
|+ ...|.-|++.+.++.+ ..+-.+|-.|.|+. .+-.+++.+++.+ | +++|+-+-.+. .-.| .
T Consensus 603 ig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~-----g--~~kL~~I~~s~-~S~k--~ 671 (717)
T KOG1048|consen 603 IG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIK-----G--IPKLRLISKSQ-HSPK--E 671 (717)
T ss_pred hh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhcc-----C--hHHHHHHhccc-CCHH--H
Confidence 88 6789999999987554 45567888999998 4557888888754 2 66776554442 2112 2
Q ss_pred hhhHHHHHHhhcCChhhhhhhcccccchhhhhh
Q 048744 155 FEHVGSILVNISKKEAGRKILLDPKRGLLKQIV 187 (312)
Q Consensus 155 ~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll 187 (312)
+.+.+.|+.+|=+..+=|.-+-..+ +.+..+
T Consensus 672 ~kaAs~vL~~lW~y~eLh~~~kk~g--~~q~~F 702 (717)
T KOG1048|consen 672 FKAASSVLDVLWQYKELHFKLKKKG--FKQQDF 702 (717)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhhh--hHHHHH
Confidence 5678889999999998887766543 444433
No 34
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=0.099 Score=55.03 Aligned_cols=138 Identities=16% Similarity=0.224 Sum_probs=105.4
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCC--ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHH
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGS--EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELA 79 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~--~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~ 79 (312)
+-+.-|++|+..-+--||..|++.+-.+-.. .+-+..|...+ ..|..|+.++.|. ..++.+|+-.|..|+.+..-.
T Consensus 122 d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P-~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~I 200 (970)
T KOG0946|consen 122 DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSP-MGISKLMDLLRDSREPIRNEAILLLSELVKDNSSI 200 (970)
T ss_pred hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCc-hhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchH
Confidence 3467789999999999999999988776544 34455565554 5689999999999 789999999999999886666
Q ss_pred HHhhhh-hHHHHHHHHHcCCC----ChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHH---HHHhcCC
Q 048744 80 GKMVQM-GMIKTAMDLLYKPD----SSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLV---RSFCRSS 147 (312)
Q Consensus 80 ~~l~~~-~~i~~lv~~i~~~~----~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll---~~f~~~~ 147 (312)
.+|+-. ++.++|++.|.++. ...+..|..+|-||=+....=..++..+ -||++|. ..|.-|+
T Consensus 201 QKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~------~~i~rL~klL~~f~~~d 270 (970)
T KOG0946|consen 201 QKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG------SYIPRLLKLLSVFEFGD 270 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc------ccHHHHHhhcCcccccC
Confidence 677765 89999999998744 3689999999999988775334555532 2555555 5665554
No 35
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=95.50 E-value=0.1 Score=53.82 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=93.9
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC--CChhH
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS--QNSEL 78 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS--~d~~~ 78 (312)
+-.+.||+.|++|.--|...++..|+.+--. .+.++....+ +.|+.|...+.+. +...+.++-+|-|++ .|++.
T Consensus 419 dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~--ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~ 496 (678)
T KOG1293|consen 419 DVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRN--NGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEE 496 (678)
T ss_pred hhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHc--CcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHH
Confidence 3467899999999999999999999998876 5566655554 5699999999888 888999999999998 45555
Q ss_pred HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744 79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD 117 (312)
Q Consensus 79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~ 117 (312)
.....++=+...++.++.||+++.-+.|..||=|||-..
T Consensus 497 k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 497 KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 555555555778999999999999999999999999774
No 36
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.17 Score=54.99 Aligned_cols=209 Identities=19% Similarity=0.271 Sum_probs=116.5
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC--ccchhhHHHHHHhcCCChhHHHH
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN--KEVSEPATEALVNLSQNSELAGK 81 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~--~~~~~~Al~~LiNLS~d~~~~~~ 81 (312)
++-.+.+|.+|.|.||..|+..+=++|.+ ++..+.-+ ...++++|+..+.+. +.+..+|..+|+|+|.+-. .+.
T Consensus 391 l~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~--~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~ 467 (1075)
T KOG2171|consen 391 LPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH--HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSI 467 (1075)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH--HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHH
Confidence 34467899999999999999999999877 54433222 224677888888776 6889999999999996421 122
Q ss_pred hhh--hhHHHHHHHHHcCCCChhH-HHHHHHHHhhcCCccchHHHhhhhhhhhhhh--hHHHHHHHHhcCCCCCCCCchh
Q 048744 82 MVQ--MGMIKTAMDLLYKPDSSIT-RLLVMLLVNLTQLDYGISSLLQVEDEQIQGL--YVMKLVRSFCRSSSEASDDPFE 156 (312)
Q Consensus 82 l~~--~~~i~~lv~~i~~~~~~~a-d~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~--~l~~Ll~~f~~~~~~~~~~~~~ 156 (312)
|.. +++++..+..+.++.++.. ..+..-++-.+ +.-.+....| .++.++.-|...... ++...
T Consensus 468 l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA----------~AA~~~F~pY~d~~Mp~L~~~L~n~~~--~d~r~ 535 (1075)
T KOG2171|consen 468 LEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVA----------DAAQEKFIPYFDRLMPLLKNFLQNADD--KDLRE 535 (1075)
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH----------HHHhhhhHhHHHHHHHHHHHHHhCCCc--hhhHH
Confidence 222 2566655555555555433 33333333222 1111112221 144444444443221 12222
Q ss_pred hHHHHHHhhcCC--hhhhhhhcccccchhhhhhhc---ccCCchhhHhhHHHHHHhhhccchhhhHHHhhhcc-Chhhhh
Q 048744 157 HVGSILVNISKK--EAGRKILLDPKRGLLKQIVRQ---FDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISE-FLWPAL 230 (312)
Q Consensus 157 ~la~vl~NlS~~--~~gR~~~l~~~~~~l~~ll~~---~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~-~~lp~l 230 (312)
-=+..+-++|-+ .=||+-|..-...+++.++-. ....+..-|.-.++.+-+.| .++.++. .+||.+
T Consensus 536 LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc--------~ilg~~F~p~L~~V 607 (1075)
T KOG2171|consen 536 LRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMC--------RILGDDFAPFLPVV 607 (1075)
T ss_pred HHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHH--------HHhchhhHhHHHHH
Confidence 224444444433 346666665433345544442 12244445666777777777 3444443 577778
Q ss_pred hhcccC
Q 048744 231 LLPVAG 236 (312)
Q Consensus 231 LlPlaG 236 (312)
+.|+.-
T Consensus 608 mppl~~ 613 (1075)
T KOG2171|consen 608 MPPLLK 613 (1075)
T ss_pred hHHHHH
Confidence 888754
No 37
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=95.30 E-value=0.032 Score=36.60 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=37.1
Q ss_pred ChhHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744 75 NSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ 115 (312)
Q Consensus 75 d~~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~ 115 (312)
+++.+..+++.|+|+.|++.+.+++......++..|+|||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 35678889999999999999999999999999999999985
No 38
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.97 Score=45.08 Aligned_cols=200 Identities=19% Similarity=0.219 Sum_probs=124.2
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCC------Cccchhhhhh--cccchHHHHHHhh-------ccCccchhhHHHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTG------SEDGLQSLSK--YSKIALPSLARLL-------SENKEVSEPATEA 68 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~------~~~~~~~i~~--~~~~~i~~L~~L~-------~d~~~~~~~Al~~ 68 (312)
.++-|+++|.|.|.||--..++.+.-+|. +.+|-+.++. ....++..|+..+ .+.....+.+++.
T Consensus 126 ~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~v 205 (536)
T KOG2734|consen 126 AVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAV 205 (536)
T ss_pred cHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHH
Confidence 46778999999999999999999999984 3445445442 1224555555443 3335567889999
Q ss_pred HHhcC-CChhHHHHhhhhhHHHHHHHHHcCCCC--hhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHH---H
Q 048744 69 LVNLS-QNSELAGKMVQMGMIKTAMDLLYKPDS--SITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVR---S 142 (312)
Q Consensus 69 LiNLS-~d~~~~~~l~~~~~i~~lv~~i~~~~~--~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~---~ 142 (312)
+.|+. -+++++..+++.|++.+|+..+....+ .+.-.|..+|+=+-.........+.-. .| +.-|++ .
T Consensus 206 veNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l----~G--iD~lL~~la~ 279 (536)
T KOG2734|consen 206 VENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPL----DG--IDVLLRQLAV 279 (536)
T ss_pred HHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCc----cc--HHHHHhhcch
Confidence 99996 578999999999999999998876433 444567777776644443222223222 22 333333 3
Q ss_pred HhcCCCCCCCCchhhHHHHHHh---hcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccch
Q 048744 143 FCRSSSEASDDPFEHVGSILVN---ISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAE 213 (312)
Q Consensus 143 f~~~~~~~~~~~~~~la~vl~N---lS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~ 213 (312)
|...++. ..+.-+|..++|.= +-+.|++|.+|+....--+.-|+-..+ ..-|++...++-...|..+
T Consensus 280 yk~~dP~-~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K---k~sr~SalkvLd~am~g~~ 349 (536)
T KOG2734|consen 280 YKRHDPA-TVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK---KVSRGSALKVLDHAMFGPE 349 (536)
T ss_pred hhccCCC-CcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH---HHhhhhHHHHHHHHHhCCC
Confidence 3333221 11234555555543 447899999999875211222222212 3347788888877777654
No 39
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=0.41 Score=50.59 Aligned_cols=135 Identities=24% Similarity=0.242 Sum_probs=104.1
Q ss_pred hHHHHHhccC-C-CCHHHHHHHHHHHHhcCCCcc-------chh----------hhhhcccchHHHHHHhhccC-ccchh
Q 048744 4 ELEELLGFLC-S-PSPSVKKAAVDIVRGLTGSED-------GLQ----------SLSKYSKIALPSLARLLSEN-KEVSE 63 (312)
Q Consensus 4 ~l~ELv~FL~-~-~~~~vR~~Al~~llgls~~~~-------~~~----------~i~~~~~~~i~~L~~L~~d~-~~~~~ 63 (312)
-++.||+-|+ + .++++-+.|++.++.++..++ .++ .+.++. +.|..|+..+... -.++.
T Consensus 62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~q-d~I~lll~~~e~~DF~VR~ 140 (970)
T KOG0946|consen 62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQ-DNITLLLQSLEEFDFHVRL 140 (970)
T ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCc-hhHHHHHHHHHhhchhhhh
Confidence 3678999999 4 599999999999999987764 221 122333 5677888888666 88999
Q ss_pred hHHHHHHhcCCC--hhHHHHhhhh-hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHH
Q 048744 64 PATEALVNLSQN--SELAGKMVQM-GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLV 140 (312)
Q Consensus 64 ~Al~~LiNLS~d--~~~~~~l~~~-~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll 140 (312)
-|+..+-+|-+. .++.+.|... -.|..+|+.+.|..++..+.+.-+|+-|++....+.+++-... ...+|+
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFEN------aFerLf 214 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFEN------AFERLF 214 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHH------HHHHHH
Confidence 999999998544 6788888765 7799999999999999999999999999999988877655432 244555
Q ss_pred HHHhc
Q 048744 141 RSFCR 145 (312)
Q Consensus 141 ~~f~~ 145 (312)
.....
T Consensus 215 sIIee 219 (970)
T KOG0946|consen 215 SIIEE 219 (970)
T ss_pred HHHHh
Confidence 55543
No 40
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.04 E-value=2.2 Score=46.52 Aligned_cols=90 Identities=26% Similarity=0.323 Sum_probs=61.0
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM 82 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l 82 (312)
.+++|+++|++++++||+.|+..|-.+. .+.+++.|..++.|. ..++..|+.+|..+....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------ 683 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT------------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------ 683 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------
Confidence 4689999999999999999999987653 124677888888888 888889989987773211
Q ss_pred hhhhHHHHHHHHHcCCCChhHHHHHHHHHhhc
Q 048744 83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLT 114 (312)
Q Consensus 83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT 114 (312)
.....+...+.++++...-.++..|..+.
T Consensus 684 ---~~~~~L~~~L~~~d~~VR~~A~~aL~~~~ 712 (897)
T PRK13800 684 ---PPAPALRDHLGSPDPVVRAAALDVLRALR 712 (897)
T ss_pred ---CchHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 01123334444445444445555555543
No 41
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.71 E-value=0.2 Score=52.11 Aligned_cols=131 Identities=21% Similarity=0.235 Sum_probs=98.4
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM 82 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l 82 (312)
-++-+++|.++++|-+|..|+.-+=.+-..... .+..+-|.++..|..+-.|. +.++|+-..+|+=|-... .+.|
T Consensus 175 mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q--al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr--~dkl 250 (885)
T KOG2023|consen 175 MIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ--ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVR--PDKL 250 (885)
T ss_pred hHHHHHHHHhCCChhHHHHHHhhhhheeecCcH--HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc--HHhc
Confidence 367899999999999999999888666544321 23333457899999999888 899999999998887543 3455
Q ss_pred hhh--hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCC
Q 048744 83 VQM--GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSS 147 (312)
Q Consensus 83 ~~~--~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~ 147 (312)
+.. ++|++.+...+|++...|=-||..+.-++..+ -++.+++ + |+.+|+-.+..|.
T Consensus 251 ~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp-i~~~~L~---p-----~l~kliPvLl~~M 308 (885)
T KOG2023|consen 251 VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP-ICKEVLQ---P-----YLDKLIPVLLSGM 308 (885)
T ss_pred ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc-CcHHHHH---H-----HHHHHHHHHHccC
Confidence 543 88999999999999999999999999898877 4555444 1 4566666665553
No 42
>PTZ00429 beta-adaptin; Provisional
Probab=94.53 E-value=2.1 Score=45.73 Aligned_cols=66 Identities=23% Similarity=0.210 Sum_probs=50.0
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC
Q 048744 6 EELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN 75 (312)
Q Consensus 6 ~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d 75 (312)
..+..-|.+++|-||+.|+-.+.-+-...+. +... .++++.|..++.|. +.+..+|+.+|..+...
T Consensus 143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~-~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQ-QDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccc-cchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 3455667899999999999998887543332 2221 25788899999998 89999999999999743
No 43
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=94.22 E-value=0.043 Score=35.98 Aligned_cols=39 Identities=33% Similarity=0.387 Sum_probs=33.2
Q ss_pred ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC
Q 048744 34 EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ 74 (312)
Q Consensus 34 ~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~ 74 (312)
+++++.|... +.++.|+.++++. ..+.+.|+.+|-|||+
T Consensus 2 ~~~~~~i~~~--g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEA--GGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHT--THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc--ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 5667777654 6899999999988 8999999999999974
No 44
>PRK09687 putative lyase; Provisional
Probab=93.86 E-value=0.79 Score=43.10 Aligned_cols=102 Identities=19% Similarity=0.121 Sum_probs=71.3
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhHHHHh
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSELAGKM 82 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~~~~l 82 (312)
++.|...++++++.||..|+..|-.+. . +..++.|+.++.|. ..+.+.|+.+|=++.. ++
T Consensus 130 ~~~l~~~~~D~~~~VR~~a~~aLg~~~-----------~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~------ 191 (280)
T PRK09687 130 VEQSQITAFDKSTNVRFAVAFALSVIN-----------D-EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP------ 191 (280)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHhccC-----------C-HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH------
Confidence 556778888899999999999883321 1 24678888888888 8889999999988842 33
Q ss_pred hhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhh
Q 048744 83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVED 128 (312)
Q Consensus 83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~ 128 (312)
..++.|+..+.|+++.....|..-|.++-. +..+..++....
T Consensus 192 ---~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~ 233 (280)
T PRK09687 192 ---DIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELK 233 (280)
T ss_pred ---HHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHc
Confidence 345556667777777777777777776533 444556655543
No 45
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=93.74 E-value=0.45 Score=40.44 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=82.9
Q ss_pred HHHHHh-ccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744 5 LEELLG-FLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM 82 (312)
Q Consensus 5 l~ELv~-FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l 82 (312)
+.+||. |=...+.+.++.-+.+|..+.-++-|-..+.+- .++...+..+..+ ...+..++..|-|||.|+..++.|
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql--~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQL--DVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHh--hHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 445554 444679999999999999999888887776554 4677778888887 778899999999999999999999
Q ss_pred hhhhHHHHHHHHHcCCCChhHHHHHHHHHhh
Q 048744 83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNL 113 (312)
Q Consensus 83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNL 113 (312)
.+.+-++..+..+.+|.......+...|--|
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l 126 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLL 126 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHh
Confidence 9987788777788887765444444333333
No 46
>PRK09687 putative lyase; Provisional
Probab=93.53 E-value=1.4 Score=41.38 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=16.1
Q ss_pred hHHHHHHHHHcCCCChhHHHHHHHHHhh
Q 048744 86 GMIKTAMDLLYKPDSSITRLLVMLLVNL 113 (312)
Q Consensus 86 ~~i~~lv~~i~~~~~~~ad~a~mLLsNL 113 (312)
..++.|+..+.|+++....-|++-|.++
T Consensus 159 ~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 159 AAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 3455555566665555555566666655
No 47
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=93.47 E-value=0.56 Score=52.71 Aligned_cols=198 Identities=15% Similarity=0.170 Sum_probs=127.8
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhcc-C-ccchhhHHHHHHhcCCC-hhHHH
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSE-N-KEVSEPATEALVNLSQN-SELAG 80 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d-~-~~~~~~Al~~LiNLS~d-~~~~~ 80 (312)
++-+|--|.+.-.++.|.-...|..||=. +.|-..+++.. +-+.+|....-. . ....|..+.||-|||+. .+.+.
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~-GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRET-GSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhh-hhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence 56677778888889999999999999977 44555555533 556677776433 3 46789999999999975 67788
Q ss_pred Hhhhh-hHHHHHHHHHcCCC----ChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCch
Q 048744 81 KMVQM-GMIKTAMDLLYKPD----SSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPF 155 (312)
Q Consensus 81 ~l~~~-~~i~~lv~~i~~~~----~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~ 155 (312)
.|+.. |++.+||.++.=.. -...+-+--+|=|++.+=..++.-=|.+... .-|..|+..+-.....-..
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~---NCLq~LLQ~LKS~SLTiVS--- 548 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH---NCLQTLLQHLKSHSLTIVS--- 548 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh---hHHHHHHHHhhhcceEEee---
Confidence 88886 99999999986321 1356677778888776654444322222211 1244566655443321110
Q ss_pred hhHHHHHHhh-cCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccc
Q 048744 156 EHVGSILVNI-SKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEA 212 (312)
Q Consensus 156 ~~la~vl~Nl-S~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~ 212 (312)
+-. ..|.|| .+.|+-.+++.+.+. +..|...+.+++.---+|.++++||.-=-.
T Consensus 549 NaC-GTLWNLSAR~p~DQq~LwD~gA--v~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 549 NAC-GTLWNLSARSPEDQQMLWDDGA--VPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred cch-hhhhhhhcCCHHHHHHHHhccc--HHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 114 345565 578888899988764 333333334444445588999999986443
No 48
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.09 E-value=1.8 Score=44.68 Aligned_cols=274 Identities=18% Similarity=0.253 Sum_probs=116.3
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHHHh
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAGKM 82 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~~l 82 (312)
+.+++..-+ +.+.+|+.|.+.|--+-..-+.. .+.+|.+++.||.|. ..+++.|+..|..+|.+ ++....+
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l------~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv 97 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDL------QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV 97 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGG------HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhh------HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH
Confidence 444555444 46889999999998887764441 125799999999998 89999999999999976 3333333
Q ss_pred hh--------h-----hHHH-HHHHHH-cCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhh--------------hhh
Q 048744 83 VQ--------M-----GMIK-TAMDLL-YKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQ--------------IQG 133 (312)
Q Consensus 83 ~~--------~-----~~i~-~lv~~i-~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~--------------~~~ 133 (312)
++ + .+|. .|++.+ .||...+..+..-++++-+..+.-.++++....++ .+.
T Consensus 98 aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~ 177 (556)
T PF05918_consen 98 ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEE 177 (556)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHH
Confidence 21 1 2233 233332 23333444444444433223332233444332211 111
Q ss_pred hhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcC-----Chhhhhhhcccccchhhhh-hh-cccCCchhhHhhHHHHHH
Q 048744 134 LYVMKLVRSFCRSSSEASDDPFEHVGSILVNISK-----KEAGRKILLDPKRGLLKQI-VR-QFDSSNYLRKKGVSGTIR 206 (312)
Q Consensus 134 ~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~-----~~~gR~~~l~~~~~~l~~l-l~-~~~~~s~iRR~gva~~ik 206 (312)
++...+.-.... -..+.++.+-.+|..+.. .++||+.+++- +..+. |. .+...++-.=.-++.+++
T Consensus 178 -~i~~~ikkvL~D---VTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~i---i~eQa~Ld~~f~~sD~e~Idrli~C~~ 250 (556)
T PF05918_consen 178 -FIVDEIKKVLQD---VTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDI---IEEQADLDQPFDPSDPESIDRLISCLR 250 (556)
T ss_dssp -HHHHHHHHHCTT-----HHHHHHHHHHHHTSGG---GSSHHHHHHHHHH---HHHHHTTTS---SSSHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHh---ccHHHHHHHHHHHHhCccccccCChHHHHHHHHH---HHHHhccCCCCCCcCHHHHHHHHHHHH
Confidence 111111111111 112357777788888775 68899888752 11111 11 011111111111233333
Q ss_pred h--hhccchhhhHHHhhh-------------cc---Chhh--hhhhcccCCCCCChhhhccCcHHhhh---hhccCCCCC
Q 048744 207 N--CCFEAEHQLQNLLLI-------------SE---FLWP--ALLLPVAGNKVYKEEDTSKIPLELAS---ALRIEREPV 263 (312)
Q Consensus 207 N--ccF~~~~H~~~ll~~-------------~~---~~lp--~lLlPlaG~ee~~~ee~~~lp~~Lq~---~l~~~re~e 263 (312)
. -+|....|...++.- ++ ++|- +-+-|.+|+.+ -.+.||.-.+. |.|.. .
T Consensus 251 ~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d----~~~~L~~i~~~L~~ymP~~-~-- 323 (556)
T PF05918_consen 251 QALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD----ARQLLPSIFQLLKKYMPSK-K-- 323 (556)
T ss_dssp HHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T----HHHHHHHHHHHHHTTS-------
T ss_pred HhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc----HHHHHHHHHHHHHHhCCCC-C--
Confidence 2 233333332122221 01 3333 23567777443 23334555554 34422 2
Q ss_pred CChHHHHHHHHHHHHHhcCHhHHH---HHHhCCcchhccc
Q 048744 264 DDPEIRIQALESIYLITLQEAGLR---AFWSVNGPRLVHG 300 (312)
Q Consensus 264 ~d~~Ir~~llE~Ll~L~~t~~gR~---~lr~~~vy~vlr~ 300 (312)
+.|++...++|||+.-.. .-|+. .+.....|.++-.
T Consensus 324 ~~~~l~fs~vEcLL~afh-~La~k~p~~~~~lCgyk~vtg 362 (556)
T PF05918_consen 324 TEPKLQFSYVECLLYAFH-QLARKSPNSLNFLCGYKIVTG 362 (556)
T ss_dssp ------HHHHHHHHHHHH-HHHTT-THHHH----------
T ss_pred CCCcccchHhhHHHHHHH-HHhhhCcchhhhHhhhccccc
Confidence 368999999999987665 33444 5566666665543
No 49
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=92.78 E-value=0.25 Score=31.50 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=33.9
Q ss_pred hHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744 77 ELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ 115 (312)
Q Consensus 77 ~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~ 115 (312)
..+..+.+.|+++.++..+..++......++..|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 356777788999999999998888999999999999974
No 50
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=1.2 Score=43.17 Aligned_cols=199 Identities=14% Similarity=0.175 Sum_probs=124.4
Q ss_pred CcchHHHHHh-ccC-CCCHHHHHHHHHHHHhcCCCccchh----------hhhhcccchHHHHHHhhccC--ccchhhHH
Q 048744 1 MANELEELLG-FLC-SPSPSVKKAAVDIVRGLTGSEDGLQ----------SLSKYSKIALPSLARLLSEN--KEVSEPAT 66 (312)
Q Consensus 1 m~~~l~ELv~-FL~-~~~~~vR~~Al~~llgls~~~~~~~----------~i~~~~~~~i~~L~~L~~d~--~~~~~~Al 66 (312)
|...+.||+- -|. ++..++-+.+...+.-++..++-|- .|.+. +.+..|...+..+ +.+-.++.
T Consensus 186 m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e--~~l~~L~Eal~A~~dp~~L~~l~ 263 (461)
T KOG4199|consen 186 MELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKE--GILTALTEALQAGIDPDSLVSLS 263 (461)
T ss_pred HHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHh--hhHHHHHHHHHccCCccHHHHHH
Confidence 3344555553 444 5555566667777777776666332 22232 3566777777665 67777888
Q ss_pred HHHHhcCCChhHHHHhhhhhHHHHHHHHHcCCCC----hhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHH
Q 048744 67 EALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDS----SITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRS 142 (312)
Q Consensus 67 ~~LiNLS~d~~~~~~l~~~~~i~~lv~~i~~~~~----~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~ 142 (312)
++|--|.-..+++..+.+.|-+..+++.+.|.+. .++..+|.+|+-|+-+++....+.+.+. .+ .|..|+..
T Consensus 264 ~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg--~~--~ii~l~~~ 339 (461)
T KOG4199|consen 264 TTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGG--LD--KIITLALR 339 (461)
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcC--hH--HHHHHHHH
Confidence 8888888888999999999999999999987443 4888999999999999998888887652 12 24455555
Q ss_pred HhcCCCCCCCCchhhHHHHHHhh----cCChhhhhhhcccccch--hhhhhhcccCCchhhHhhHHHHHHhhhccchhh
Q 048744 143 FCRSSSEASDDPFEHVGSILVNI----SKKEAGRKILLDPKRGL--LKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQ 215 (312)
Q Consensus 143 f~~~~~~~~~~~~~~la~vl~Nl----S~~~~gR~~~l~~~~~~--l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H 215 (312)
|.... .-+..+.+=+ =+.|+.-..+++.+.+. ++.+=.+ . .-..-.+.....|||..--....
T Consensus 340 h~~~p--------~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah-P-~~a~vQrnac~~IRNiv~rs~~~ 408 (461)
T KOG4199|consen 340 HSDDP--------LVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH-P-VAAQVQRNACNMIRNIVVRSAEN 408 (461)
T ss_pred cCCCh--------HHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHhhhhc
Confidence 54331 1122222222 35666666667765432 2222111 1 12233455677888887544444
No 51
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=0.52 Score=49.12 Aligned_cols=234 Identities=14% Similarity=0.191 Sum_probs=120.4
Q ss_pred hHHHHHhccC---CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCccchhhHHHHHHh-cC-CChhH
Q 048744 4 ELEELLGFLC---SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVN-LS-QNSEL 78 (312)
Q Consensus 4 ~l~ELv~FL~---~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiN-LS-~d~~~ 78 (312)
.+.++++.|+ ++++++|+.+...+..+-.-++-..++ +--|.+.-++...++.-|=..|-| +- +....
T Consensus 11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL-------~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~ 83 (885)
T KOG2023|consen 11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYL-------IYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSI 83 (885)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhcee-------eEEEecccccchhHHHHhhhhHhccccccccCC
Confidence 4677777777 689999999999998886555433221 112222222221111111112222 10 11111
Q ss_pred HHHhhhhhHHH-HHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhh
Q 048744 79 AGKMVQMGMIK-TAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEH 157 (312)
Q Consensus 79 ~~~l~~~~~i~-~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~ 157 (312)
... ..++|. .++..+.|+++....-.-.+.+-+.... |. ..++. .+++|++++...+++...+.+.-
T Consensus 84 ~~~--~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~-~~--------~~wpe-lLp~L~~~L~s~d~n~~EgA~~A 151 (885)
T KOG2023|consen 84 PSE--VLDYIKSECLHGLGDASPLIRATVGIVITTIASTG-GL--------QHWPE-LLPQLCELLDSPDYNTCEGAFGA 151 (885)
T ss_pred ChH--HHHHHHHHHHhhccCchHHHHhhhhheeeeeeccc-cc--------ccchh-HHHHHHHHhcCCcccccchhHHH
Confidence 111 014444 3555555544422211112211111111 01 11222 37899999999998876666666
Q ss_pred HHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCC
Q 048744 158 VGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGN 237 (312)
Q Consensus 158 la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ 237 (312)
|..|.-+-++.-+ +++.-+|-+-.+.+++.+++|+|+.-|..+++++-..-..... .+...=+. +--.|+-+|+
T Consensus 152 L~KIcEDsa~~ld-s~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q---al~~~iD~-Fle~lFalan- 225 (885)
T KOG2023|consen 152 LQKICEDSAQFLD-SDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ---ALYVHIDK-FLEILFALAN- 225 (885)
T ss_pred HHHHHhhhHHHHh-hhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH---HHHHHHHH-HHHHHHHHcc-
Confidence 6666655544332 2233233334667788788999999999999887433322111 11110000 0012222332
Q ss_pred CCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhHHH
Q 048744 238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLR 287 (312)
Q Consensus 238 ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~ 287 (312)
++||++|+.++.+|..|.-+|--|-
T Consensus 226 -------------------------D~~~eVRk~vC~alv~Llevr~dkl 250 (885)
T KOG2023|consen 226 -------------------------DEDPEVRKNVCRALVFLLEVRPDKL 250 (885)
T ss_pred -------------------------CCCHHHHHHHHHHHHHHHHhcHHhc
Confidence 2389999999999999987776553
No 52
>PF05536 Neurochondrin: Neurochondrin
Probab=92.20 E-value=2.9 Score=43.12 Aligned_cols=121 Identities=22% Similarity=0.254 Sum_probs=87.1
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCCcc----chhhhhhcccchHHHHHHhhccC--------ccchhhHHHHHH
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSED----GLQSLSKYSKIALPSLARLLSEN--------KEVSEPATEALV 70 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~----~~~~i~~~~~~~i~~L~~L~~d~--------~~~~~~Al~~Li 70 (312)
..+++-+..|++.+.+=|=.|+-.+-.+-.+.+ .++.|+..- + .+=|-||+..+ ..-..-|++.|-
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~ai-g-~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAI-G-FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc-C-hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 458889999998885556666666666655533 233566432 1 23445554331 234567899999
Q ss_pred hcCCChhHHHH--hhhhhHHHHHHHHHcCCCC-hhHHHHHHHHHhhcCCccchHHHhhhh
Q 048744 71 NLSQNSELAGK--MVQMGMIKTAMDLLYKPDS-SITRLLVMLLVNLTQLDYGISSLLQVE 127 (312)
Q Consensus 71 NLS~d~~~~~~--l~~~~~i~~lv~~i~~~~~-~~ad~a~mLLsNLT~~~~~~~~ll~~~ 127 (312)
-+|.+|+++.. ++ +-|+.+++.+.+... ...+.|...|.+++.+++|...+++.+
T Consensus 83 ~f~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g 140 (543)
T PF05536_consen 83 AFCRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESG 140 (543)
T ss_pred HHcCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcC
Confidence 99999887643 22 678899999988777 899999999999999999999998854
No 53
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.13 E-value=3.3 Score=36.43 Aligned_cols=147 Identities=21% Similarity=0.246 Sum_probs=87.4
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhHHHHh
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSELAGKM 82 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~~~~l 82 (312)
++.+++..-+++..||..|++.|--.- ..| + .++..++|.|+.|..|. +.+++.|...|..+.. .+.....=
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il--~qG---L-vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELIL--RQG---L-VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHH--hcC---C-CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 567888778999999999999885442 223 2 24446899999999998 8999999999999964 44443332
Q ss_pred hhhhHHHHHHHHHcC--CCCh------hHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCC----CCC
Q 048744 83 VQMGMIKTAMDLLYK--PDSS------ITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSS----SEA 150 (312)
Q Consensus 83 ~~~~~i~~lv~~i~~--~~~~------~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~----~~~ 150 (312)
.. ..|...+++-.. ++.. .......+-+.+....+...+ .+..|+..|.... .+.
T Consensus 84 ~~-~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~------------Fl~~l~k~f~~~~~~~~~~~ 150 (187)
T PF12830_consen 84 YS-EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK------------FLKSLLKQFDFDLTKLSSES 150 (187)
T ss_pred HH-HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH------------HHHHHHHHHHhhcccccccc
Confidence 22 234444444321 2211 111111222222222222222 3556666665543 112
Q ss_pred CCCchhhHHHHHHhhcCChh
Q 048744 151 SDDPFEHVGSILVNISKKEA 170 (312)
Q Consensus 151 ~~~~~~~la~vl~NlS~~~~ 170 (312)
.....+|+.++.-|++.+|=
T Consensus 151 ~~~~l~~~~Fla~nLA~l~y 170 (187)
T PF12830_consen 151 SPSDLDFLLFLAENLATLPY 170 (187)
T ss_pred chhHHHHHHHHHHHHhcCCC
Confidence 33458888898999988773
No 54
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.03 E-value=1.4 Score=38.33 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=50.8
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN 75 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d 75 (312)
++.+...|++++|.||+.|+..|.-|-..+ ..+..+.++..++.++.|. +.++..|..++..++..
T Consensus 27 ~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-----~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 27 LPNLYKCLRDEDPLVRKTALLVLSHLILED-----MIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----ceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 567888999999999999999998875332 1232223446777888888 89999999999999855
No 55
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.71 E-value=0.54 Score=47.13 Aligned_cols=56 Identities=29% Similarity=0.379 Sum_probs=27.7
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhc
Q 048744 12 LCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNL 72 (312)
Q Consensus 12 L~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNL 72 (312)
|.+++|.||+.|+-.+..+....+. +... .+++.+..++.|. +.+...|+.++..+
T Consensus 123 l~~~~~~VRk~A~~~l~~i~~~~p~---~~~~--~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 123 LSDPSPYVRKKAALALLKIYRKDPD---LVED--ELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHSSSHHHHHHHHHHHHHHHHHCHC---CHHG--GHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHhccCHH---HHHH--HHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 3455666666665555555332211 1111 1455566665555 45555555555555
No 56
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.22 E-value=1 Score=39.20 Aligned_cols=90 Identities=23% Similarity=0.314 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhh-h-HHHHHH
Q 048744 16 SPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQM-G-MIKTAM 92 (312)
Q Consensus 16 ~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~-~-~i~~lv 92 (312)
+|.||..|+..+-.+...-++ +. +..++.+...+.|. +.+++.|+.+|..|-..+ .++. | .+..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~v---e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-----~ik~k~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LV---EPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-----MIKVKGQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HH---HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----ceeehhhhhHHHH
Confidence 588999999999888655444 22 24688999999999 899999999999985432 2332 3 336777
Q ss_pred HHHcCCCChhHHHHHHHHHhhcCC
Q 048744 93 DLLYKPDSSITRLLVMLLVNLTQL 116 (312)
Q Consensus 93 ~~i~~~~~~~ad~a~mLLsNLT~~ 116 (312)
..+.|+++..++.|...+..+.+.
T Consensus 70 ~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 70 KLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHh
Confidence 888999999999999999998877
No 57
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=89.83 E-value=1.4 Score=48.40 Aligned_cols=111 Identities=18% Similarity=0.260 Sum_probs=92.6
Q ss_pred HHHHHhccC-CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCCChhHHHHhh
Q 048744 5 LEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMV 83 (312)
Q Consensus 5 l~ELv~FL~-~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~~~~l~ 83 (312)
++-++..|. +..++|++.|++.+.-+|...+-..-+... +.+-.|+.+++..+.-..-++..|.-|+..+.+...-.
T Consensus 1773 F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~--~vL~~LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~ 1850 (2235)
T KOG1789|consen 1773 FPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATC--NVLTTLLTLLHSQPSMRARVLDVLYALSSNGQIGKEAL 1850 (2235)
T ss_pred cHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhh--hHHHHHHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 345666777 578999999999999999998877777653 57889999999998889999999999999999998888
Q ss_pred hhhHHHHHHHHHcCCCCh-hHHHHHHHHHhhcCCc
Q 048744 84 QMGMIKTAMDLLYKPDSS-ITRLLVMLLVNLTQLD 117 (312)
Q Consensus 84 ~~~~i~~lv~~i~~~~~~-~ad~a~mLLsNLT~~~ 117 (312)
+.|.+..+.+++++.+.+ ..-.++.||+.|+..+
T Consensus 1851 ~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1851 EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 889999999999887764 3446778888887665
No 58
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=89.74 E-value=17 Score=36.46 Aligned_cols=195 Identities=11% Similarity=0.083 Sum_probs=118.2
Q ss_pred HHHHHhccC-CCCHHHHHHHHHHHHhcCCCccchhhhhhcc----cchHHHHHHhhccC-ccchhhHHHHHHhcCCChhH
Q 048744 5 LEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYS----KIALPSLARLLSEN-KEVSEPATEALVNLSQNSEL 78 (312)
Q Consensus 5 l~ELv~FL~-~~~~~vR~~Al~~llgls~~~~~~~~i~~~~----~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~ 78 (312)
..-++.+|+ ..++++.+..+..+-.+-...+.+..+|... +..-...++++..+ ..+...|..+|..+......
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~ 134 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLA 134 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcc
Confidence 345777888 4799999999998888877766655555321 12344555566555 78889999999988543211
Q ss_pred HHHhhhh-hHHHHHHHHHcCCC-ChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchh
Q 048744 79 AGKMVQM-GMIKTAMDLLYKPD-SSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFE 156 (312)
Q Consensus 79 ~~~l~~~-~~i~~lv~~i~~~~-~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~ 156 (312)
...-... -++..+.+.+.++. ....+.+...|++|-+.+.....+.+.. | +..|++.+..... +-.-.|+
T Consensus 135 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~-----~--v~~L~~~L~~~~~-~~Ql~Y~ 206 (429)
T cd00256 135 KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD-----G--VPTLVKLLSNATL-GFQLQYQ 206 (429)
T ss_pred ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc-----C--HHHHHHHHhhccc-cHHHHHH
Confidence 1010011 24445666666543 5567778889999999998665554432 2 5677777654321 1111233
Q ss_pred hHHHHHHhhcCChhhhhhhcccccchhhhhhhccc--CCchhhHhhHHHHHHhhhcc
Q 048744 157 HVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFD--SSNYLRKKGVSGTIRNCCFE 211 (312)
Q Consensus 157 ~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~--~~s~iRR~gva~~ikNccF~ 211 (312)
+..++==+|=.+++-..+.+. +++..++..+. .+-.+= +-+.+|+||++-.
T Consensus 207 -~ll~lWlLSF~~~~~~~~~~~--~~i~~l~~i~k~s~KEKvv-Rv~l~~l~Nll~~ 259 (429)
T cd00256 207 -SIFCIWLLTFNPHAAEVLKRL--SLIQDLSDILKESTKEKVI-RIVLAIFRNLISK 259 (429)
T ss_pred -HHHHHHHHhccHHHHHhhccc--cHHHHHHHHHHhhhhHHHH-HHHHHHHHHHhhc
Confidence 336666688888877766443 46666665432 122222 3467899999963
No 59
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.73 E-value=1.3 Score=47.45 Aligned_cols=136 Identities=19% Similarity=0.186 Sum_probs=90.2
Q ss_pred HHHHHhccCC-CCHHHHHHHHHHHHhcC--CCccchhhhhhcccchHHHHHHhhccC--ccchhhHHHHHHhcCC-ChhH
Q 048744 5 LEELLGFLCS-PSPSVKKAAVDIVRGLT--GSEDGLQSLSKYSKIALPSLARLLSEN--KEVSEPATEALVNLSQ-NSEL 78 (312)
Q Consensus 5 l~ELv~FL~~-~~~~vR~~Al~~llgls--~~~~~~~~i~~~~~~~i~~L~~L~~d~--~~~~~~Al~~LiNLS~-d~~~ 78 (312)
+..|++=|.. ..|-.+-.|+.-++..- ++++-.. .|-. +.++|.|+.|+.+. ..+-..|.+||.||+. -|.-
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs-~fpv-~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLS-GFPV-KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhc-cccH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 3445555553 35555555555444322 2233222 2322 25899999999887 7899999999999995 5888
Q ss_pred HHHhhhhhHHHHHHHHHcCCCC-hhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCC
Q 048744 79 AGKMVQMGMIKTAMDLLYKPDS-SITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSS 148 (312)
Q Consensus 79 ~~~l~~~~~i~~lv~~i~~~~~-~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~ 148 (312)
...+++.++|+.++..+.-=+. .+|+.+...|--++|.+. .++++.+.- . .....++.|..+..
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l--~--a~LsylDFFSi~aQ 311 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGAL--S--AVLSYLDFFSIHAQ 311 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccH--H--HHHHHHHHHHHHHH
Confidence 8888988899988887654333 588888999999999886 567777531 1 13355666665554
No 60
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=88.85 E-value=1.5 Score=34.70 Aligned_cols=67 Identities=25% Similarity=0.345 Sum_probs=50.0
Q ss_pred cchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhh--hHHHHHHHHHcCCCChhHHHHHHHHHhhc
Q 048744 45 KIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQM--GMIKTAMDLLYKPDSSITRLLVMLLVNLT 114 (312)
Q Consensus 45 ~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~--~~i~~lv~~i~~~~~~~ad~a~mLLsNLT 114 (312)
+.+++.++.++.|+ ..++--|..+|.|++..- .+.++.. .+...+...+.|+++. ...++.+|.+|=
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHh
Confidence 36899999999999 889999999999998432 3444432 5566777788888775 456667777663
No 61
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=87.99 E-value=0.61 Score=28.64 Aligned_cols=26 Identities=38% Similarity=0.620 Sum_probs=21.5
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhc
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGL 30 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgl 30 (312)
++-+++.+.|++++||..|+..+-.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999987654
No 62
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=87.94 E-value=0.95 Score=33.74 Aligned_cols=55 Identities=31% Similarity=0.478 Sum_probs=40.7
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-c-cchhhHHHHH
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-K-EVSEPATEAL 69 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~-~~~~~Al~~L 69 (312)
..++.|+++++++++.||..|+..|--+. . +..++.|..++.++ . .+...|..+|
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------~-~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIG-----------D-PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------H-HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------C-HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 45788999999999999999999987661 1 24678888887665 3 3456666665
No 63
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=87.87 E-value=1.3 Score=35.01 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=52.0
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCC
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQ 74 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~ 74 (312)
++.++..+.+++..||-.|.+.+-.++....+ .+..+-..+...|.+++.|...-.+.|...|-+|-.
T Consensus 29 l~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~--~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 29 LPPVLKCFDDQDSRVRYYACEALYNISKVARG--EILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 56788889999999999999999999755332 333332368889999999996667788888877643
No 64
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.59 E-value=12 Score=36.35 Aligned_cols=200 Identities=18% Similarity=0.272 Sum_probs=115.3
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCcc-chhhhhhcccchHHHHHHhh-ccC-ccchhhHHHHHHhcCCC-hhHHH
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSED-GLQSLSKYSKIALPSLARLL-SEN-KEVSEPATEALVNLSQN-SELAG 80 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~-~~~~i~~~~~~~i~~L~~L~-~d~-~~~~~~Al~~LiNLS~d-~~~~~ 80 (312)
+..|+.+|.++.+.||..|+..|-....+.+ -.+.++.. ++++.|...+ +++ -.++..|+-|+-+|=-+ +.+..
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~--~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~ 203 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL--GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQD 203 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc--ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHH
Confidence 4567889999999999999999988887744 33345543 4677776665 444 45557788777777643 44455
Q ss_pred HhhhhhHHHHHHHHHcCC--CChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCC-CCCCCchhh
Q 048744 81 KMVQMGMIKTAMDLLYKP--DSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSS-EASDDPFEH 157 (312)
Q Consensus 81 ~l~~~~~i~~lv~~i~~~--~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~-~~~~~~~~~ 157 (312)
...+.+-...|.+.+.++ +......+.-|+++|+..+.....++. +....+.+..+..... ....+.
T Consensus 204 ~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~-------~~~f~~~~~~l~~~l~~~~~e~~--- 273 (342)
T KOG2160|consen 204 EFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS-------SLGFQRVLENLISSLDFEVNEAA--- 273 (342)
T ss_pred HHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH-------HhhhhHHHHHHhhccchhhhHHH---
Confidence 545543366677777763 446777899999999987753333211 1123445554444322 111111
Q ss_pred HHHHHHhhcCChhhhhhhccccc--chhhhhhhcc-cCCchhhHhhHHHHHHhhhccchhhh
Q 048744 158 VGSILVNISKKEAGRKILLDPKR--GLLKQIVRQF-DSSNYLRKKGVSGTIRNCCFEAEHQL 216 (312)
Q Consensus 158 la~vl~NlS~~~~gR~~~l~~~~--~~l~~ll~~~-~~~s~iRR~gva~~ikNccF~~~~H~ 216 (312)
+..++.=++-.+.+-.++...-. ..+++..-.. .|...-+++-.+.=+...|++.+.+.
T Consensus 274 l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~l~~~l~~~~~e~~~~~ 335 (342)
T KOG2160|consen 274 LTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEERQLVNSLWEICGEVPSIL 335 (342)
T ss_pred HHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 22333333333333223322211 1233222222 24455677777888888888887774
No 65
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=87.39 E-value=1.4 Score=30.26 Aligned_cols=54 Identities=35% Similarity=0.404 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhc
Q 048744 17 PSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNL 72 (312)
Q Consensus 17 ~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNL 72 (312)
|.||..|+..|-.+....... +....+.+++.|..++.|+ ..++..|+.+|=||
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~--~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPEL--LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHH--HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 579999999886665443322 1112236899999999888 78888999888764
No 66
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=87.30 E-value=0.74 Score=29.18 Aligned_cols=38 Identities=37% Similarity=0.414 Sum_probs=29.9
Q ss_pred cchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC
Q 048744 35 DGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ 74 (312)
Q Consensus 35 ~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~ 74 (312)
+++..+... +.++.|+.+++.+ ..+.+.|+.+|-|++.
T Consensus 3 ~~~~~i~~~--g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDA--GGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 355555443 6899999999876 8899999999999973
No 67
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=87.25 E-value=3.7 Score=44.78 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=59.2
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhh
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMV 83 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~ 83 (312)
.+.|..+|.+++++||..|+..|-.+..... ..++.|..+++|. +.++..|+.+|-++...+.+
T Consensus 744 ~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~----------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~----- 808 (897)
T PRK13800 744 VESVAGAATDENREVRIAVAKGLATLGAGGA----------PAGDAVRALTGDPDPLVRAAALAALAELGCPPDD----- 808 (897)
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccccc----------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchh-----
Confidence 3568889999999999999998877643211 2356777778777 77888888888887654322
Q ss_pred hhhHHHHHHHHHcCCCChhHHHHHHHHHhhc
Q 048744 84 QMGMIKTAMDLLYKPDSSITRLLVMLLVNLT 114 (312)
Q Consensus 84 ~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT 114 (312)
+..++..+.|+++....-|...|..+.
T Consensus 809 ----~~~l~~aL~d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 809 ----VAAATAALRASAWQVRQGAARALAGAA 835 (897)
T ss_pred ----HHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 123444455555544444555555543
No 68
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=86.90 E-value=4.7 Score=38.99 Aligned_cols=195 Identities=14% Similarity=0.115 Sum_probs=122.2
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCC---c---cchhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCCChhH
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGS---E---DGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSEL 78 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~---~---~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~ 78 (312)
+..|+.-|..-.-+.|+.+..+.-.+-.- . +..+.|..+.+.++..|+.-.+ .+.++-.+=.+|-....++.+
T Consensus 78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~-~~dial~~g~mlRec~k~e~l 156 (335)
T PF08569_consen 78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE-NPDIALNCGDMLRECIKHESL 156 (335)
T ss_dssp HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG-STTTHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc-CccccchHHHHHHHHHhhHHH
Confidence 56678888877778888777766544332 1 2345676652355555555333 367788888999999999999
Q ss_pred HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHh-hcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhh
Q 048744 79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVN-LTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEH 157 (312)
Q Consensus 79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsN-LT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~ 157 (312)
++.++....+..+++++..+.-..|-.|...+-= ||++++-+..++..- ... .....-.++..+.|-.+--++..
T Consensus 157 ~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n---~d~-ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 157 AKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNN---YDR-FFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp HHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT---HHH-HHHHHHHHCT-SSHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHH---HHH-HHHHHHHHccCCCeEeehhhHHH
Confidence 9999999899999999999988777777777666 688887777766432 111 12233333334433322224567
Q ss_pred HHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHH
Q 048744 158 VGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIR 206 (312)
Q Consensus 158 la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ik 206 (312)
|+.+|.|=+-..--.+|+=++. -++.++..+.++|..-|-.+..++|
T Consensus 233 L~ellldr~n~~vm~~yi~~~~--nLkl~M~lL~d~sk~Iq~eAFhvFK 279 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPE--NLKLMMNLLRDKSKNIQFEAFHVFK 279 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HH--HHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred HHHHHHchhHHHHHHHHHCCHH--HHHHHHHHhcCcchhhhHHHHHHHH
Confidence 7777777666666666776665 3666666656565444444444443
No 69
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.40 E-value=4.5 Score=39.36 Aligned_cols=186 Identities=11% Similarity=0.204 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-----ccchhhHHHHHHhcCCChhHHHHhhhhhHHHH
Q 048744 16 SPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-----KEVSEPATEALVNLSQNSELAGKMVQMGMIKT 90 (312)
Q Consensus 16 ~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-----~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~ 90 (312)
.|++-..+...|-.+...+|-...|... +-++.|++++.|. ...+|.+++.|--|....++...|++.|..+.
T Consensus 255 dp~~L~~l~~tl~~lAVr~E~C~~I~e~--GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ 332 (461)
T KOG4199|consen 255 DPDSLVSLSTTLKALAVRDEICKSIAES--GGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDK 332 (461)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHc--cCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHH
Confidence 3565555666665565556666666543 4588999998772 44678888899999999999999999877666
Q ss_pred HHHHHcC--CCChhHHHHHHHHHhhc-CCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHh-hc
Q 048744 91 AMDLLYK--PDSSITRLLVMLLVNLT-QLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVN-IS 166 (312)
Q Consensus 91 lv~~i~~--~~~~~ad~a~mLLsNLT-~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~N-lS 166 (312)
++..... .++.....+|..+|=|+ |++.+..++++.+.. ....+-|..|=+... ...-....+.| ++
T Consensus 333 ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a----~~avqAmkahP~~a~-----vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 333 IITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAA----DLAVQAMKAHPVAAQ-----VQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchH----HHHHHHHHhCcHHHH-----HHHHHHHHHHHHHH
Confidence 5554332 34445666777777775 556667777776531 123455555533221 12224577788 56
Q ss_pred CChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhh
Q 048744 167 KKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQ 215 (312)
Q Consensus 167 ~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H 215 (312)
+..+.|..++..+ +.+|+.+-....+.=|.-+-.++|.+-.+....
T Consensus 404 rs~~~~~~~l~~G---iE~Li~~A~~~h~tce~~akaALRDLGc~v~lr 449 (461)
T KOG4199|consen 404 RSAENRTILLANG---IEKLIRTAKANHETCEAAAKAALRDLGCDVYLR 449 (461)
T ss_pred hhhhccchHHhcc---HHHHHHHHHhcCccHHHHHHHHHHhcCcchhhH
Confidence 7788888888875 777777754444445566667888887765544
No 70
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=86.24 E-value=0.48 Score=38.21 Aligned_cols=58 Identities=24% Similarity=0.199 Sum_probs=37.4
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhc
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNL 72 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNL 72 (312)
++-..|+.+|+|+|++||-.|..+++.+.. .+ +.+.|-.+-+.+ -+.+-+|=.+|-||
T Consensus 47 d~r~aLl~LL~hpn~~VRl~AA~~~L~~~p-~e-----------A~~~Le~ia~~~~~~~a~~a~~~l~~l 105 (106)
T PF09450_consen 47 DQRDALLPLLKHPNMQVRLWAAAHTLRYAP-EE-----------ARKVLEEIASSKWFPQAGDAGMCLRNL 105 (106)
T ss_dssp -GGGGGGGGGGSS-HHHHHHHHHTTTTT-H-HH-----------HHHHHHHHHHHT-TTHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCCChhHHHHHHHHHHHhCH-HH-----------HHHHHHHHHHcCCCCCCCcHHHHHHhc
Confidence 456789999999999999999999998752 12 222333333333 45566777777664
No 71
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=86.11 E-value=3.1 Score=44.39 Aligned_cols=94 Identities=18% Similarity=0.241 Sum_probs=68.3
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC-CChhHHHHhhhhhHH
Q 048744 11 FLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS-QNSELAGKMVQMGMI 88 (312)
Q Consensus 11 FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS-~d~~~~~~l~~~~~i 88 (312)
=|.|+||.+|..|+..+..+-.. .|.. .+++.+++++.|+ +.+++.|+-|++++= .|+... .+.|.+
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~~-----el~~---~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~---~~~g~~ 168 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRVK-----ELLG---NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLY---HELGLI 168 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcChH-----HHHH---HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhh---hcccHH
Confidence 35578999999999988777322 1332 4788999999999 889999999999995 554333 234677
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744 89 KTAMDLLYKPDSSITRLLVMLLVNLTQ 115 (312)
Q Consensus 89 ~~lv~~i~~~~~~~ad~a~mLLsNLT~ 115 (312)
..+...+.|+++.+...|..-|.++-.
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 777788888888766556555555443
No 72
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=84.75 E-value=2.1 Score=39.62 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCCccchhhhhhccc-----chHHHHHHhhccC--ccchhhHHHHHHhcCC-ChhHHHHhhhh-hHH
Q 048744 18 SVKKAAVDIVRGLTGSEDGLQSLSKYSK-----IALPSLARLLSEN--KEVSEPATEALVNLSQ-NSELAGKMVQM-GMI 88 (312)
Q Consensus 18 ~vR~~Al~~llgls~~~~~~~~i~~~~~-----~~i~~L~~L~~d~--~~~~~~Al~~LiNLS~-d~~~~~~l~~~-~~i 88 (312)
.=|+.|++.++-++..+.|...|...++ .+..-|++++++. ...++=|+..|-||++ +..++..+... ++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 4489999999999999999887764322 3667888888776 5678899999999995 55666566654 889
Q ss_pred HHHHHHHcC
Q 048744 89 KTAMDLLYK 97 (312)
Q Consensus 89 ~~lv~~i~~ 97 (312)
..|+..|.+
T Consensus 219 ~~Li~FiE~ 227 (257)
T PF12031_consen 219 SHLIAFIED 227 (257)
T ss_pred HHHHHHHHH
Confidence 999998875
No 73
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.10 E-value=14 Score=35.93 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHHHhhhhhHHHHH
Q 048744 14 SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAGKMVQMGMIKTA 91 (312)
Q Consensus 14 ~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~~l~~~~~i~~l 91 (312)
+..++=|..|++.|.-+-.+=++-..|.+.. ++ ..++..+.+. ..++.-|...+--.+++ |.+.+.+.+.|+...|
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~g-gl-~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLG-GL-VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhcc-CH-HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 3467778889998888887755555565553 44 4444477776 78899999999888865 8999999999999999
Q ss_pred HHHHcCCCChhH-HHHHHHHHhhcCCccchH-HHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhc
Q 048744 92 MDLLYKPDSSIT-RLLVMLLVNLTQLDYGIS-SLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNIS 166 (312)
Q Consensus 92 v~~i~~~~~~~a-d~a~mLLsNLT~~~~~~~-~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS 166 (312)
+..+....+..+ ..|.--+|+|=|+..... +++.. .| ..-|.+++..++...+ ..-.+...++++.
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~-----~G--~~~L~~vl~~~~~~~~--lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKL-----NG--YQVLRDVLQSNNTSVK--LKRKALFLLSLLL 239 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhc-----CC--HHHHHHHHHcCCcchH--HHHHHHHHHHHHH
Confidence 999987666555 688888999988886443 33322 23 5577777777644322 1223445555543
No 74
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=82.32 E-value=15 Score=36.11 Aligned_cols=177 Identities=16% Similarity=0.200 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC-CChhHHHHhhhhhHHHHHHH
Q 048744 16 SPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS-QNSELAGKMVQMGMIKTAMD 93 (312)
Q Consensus 16 ~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS-~d~~~~~~l~~~~~i~~lv~ 93 (312)
+..=|.+|+..+.-+-.-..|.+.+ +.+++++|+.+..+. ..-..-|+..|..++ .+|.+ +...|.+..+++
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~~---~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~ 154 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKEI---PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL---VAECGGIRVLLR 154 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcccC---CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHH
Confidence 3334778888776655444443333 226778888887776 556777888888887 45543 334577899999
Q ss_pred HHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCC--C---CchhhHHHHHHhhcCC
Q 048744 94 LLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEAS--D---DPFEHVGSILVNISKK 168 (312)
Q Consensus 94 ~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~--~---~~~~~la~vl~NlS~~ 168 (312)
.+.++....++..++.+--+=-++.. .+.+..+ +.+..++.-|+...+.+. + ..+.-.+.+++=+=+.
T Consensus 155 ~l~d~~~~~~~~l~~~lL~lLd~p~t-R~yl~~~------~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs 227 (371)
T PF14664_consen 155 ALIDGSFSISESLLDTLLYLLDSPRT-RKYLRPG------FDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS 227 (371)
T ss_pred HHHhccHhHHHHHHHHHHHHhCCcch-hhhhcCC------ccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc
Confidence 99886656777777777777666653 3333322 236677777776643311 1 1233334444444455
Q ss_pred hhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHH
Q 048744 169 EAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTI 205 (312)
Q Consensus 169 ~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~i 205 (312)
=.|=-+|..++-..++.++-.+..+++.=|+.|..++
T Consensus 228 W~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll 264 (371)
T PF14664_consen 228 WPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLL 264 (371)
T ss_pred CCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5566666665535788888887777776566555544
No 75
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=81.45 E-value=14 Score=37.10 Aligned_cols=100 Identities=16% Similarity=0.225 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC---ccchhhHHHHHHhcCCChhHHHHhhhhhHHHHHH
Q 048744 16 SPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN---KEVSEPATEALVNLSQNSELAGKMVQMGMIKTAM 92 (312)
Q Consensus 16 ~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~---~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~lv 92 (312)
+.+.+..|+..+..+-..++.|..+++.+ .++.|+.+++.. .+..=.++-|+-=||=++...+.+.+.++|..++
T Consensus 157 ~~~~~~~~v~~L~~LL~~~~~R~~f~~~~--~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~ 234 (429)
T cd00256 157 NNDYVQTAARCLQMLLRVDEYRFAFVLAD--GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLS 234 (429)
T ss_pred CcchHHHHHHHHHHHhCCchHHHHHHHcc--CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHH
Confidence 56778888888888888888887776653 578888887653 3566778888888998888777776679999999
Q ss_pred HHHcC-CCChhHHHHHHHHHhhcCCc
Q 048744 93 DLLYK-PDSSITRLLVMLLVNLTQLD 117 (312)
Q Consensus 93 ~~i~~-~~~~~ad~a~mLLsNLT~~~ 117 (312)
+.+.. ++++....+.++|-||....
T Consensus 235 ~i~k~s~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 235 DILKESTKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence 98875 77899999999999998754
No 76
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=81.43 E-value=29 Score=36.88 Aligned_cols=163 Identities=23% Similarity=0.276 Sum_probs=99.1
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhh---c-c-------cc----hHHHHHHhhccCccchhhHHHHHH
Q 048744 6 EELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSK---Y-S-------KI----ALPSLARLLSENKEVSEPATEALV 70 (312)
Q Consensus 6 ~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~---~-~-------~~----~i~~L~~L~~d~~~~~~~Al~~Li 70 (312)
-.|+.||++.+|.+-..|+.+++..+.++++...+.+ . . .+ +++.-++-+..+.-..++|...|-
T Consensus 202 ~rLL~lL~~~~Psi~~~~~~~lL~~A~~~~~l~lli~L~~~~~~~~~~~~~~l~~~vle~~l~~i~~~~lt~~e~~qLl~ 281 (696)
T PF14838_consen 202 HRLLCLLSSQHPSIAIEAISYLLTKAQNPEHLALLIRLYAGLSVVNFPSLPGLFPAVLEQCLRQIHTNTLTPTEATQLLQ 281 (696)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCccccccchHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 3578889999999999999999999888887664432 1 0 01 122222222224446788888888
Q ss_pred hcCC--------C---hhHHHHhhhh--hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccc---hHHHhhhhhhhhhhh
Q 048744 71 NLSQ--------N---SELAGKMVQM--GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYG---ISSLLQVEDEQIQGL 134 (312)
Q Consensus 71 NLS~--------d---~~~~~~l~~~--~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~---~~~ll~~~~e~~~~~ 134 (312)
||.. . ......+.+. ..+..+...+..++...+..++.||..+--.... ...++...
T Consensus 282 NL~~L~k~eks~~~~~~~~~~~l~~Al~~~L~~i~~lL~~~~~~~~~~~v~lL~~l~~~~~~~~~~~~~L~l~------- 354 (696)
T PF14838_consen 282 NLALLAKWEKSGNVPPASMSSQLTQALSSHLPDIAQLLLHSDPEVAHAAVKLLDLLPLPEKAPLSPSLLLKLS------- 354 (696)
T ss_pred HHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCccccCCCHHHHHHHH-------
Confidence 8842 1 1133444443 4566667777678888999999999998766632 12222111
Q ss_pred hHHHHHHHHhc----CCCCCCCCchhhHHHHHHhhcCC-hhhhhhhcc
Q 048744 135 YVMKLVRSFCR----SSSEASDDPFEHVGSILVNISKK-EAGRKILLD 177 (312)
Q Consensus 135 ~l~~Ll~~f~~----~~~~~~~~~~~~la~vl~NlS~~-~~gR~~~l~ 177 (312)
...+..|.. .+..++...+++.-.+|.-+++. |.+|...++
T Consensus 355 --~~~V~yFF~~l~~~~~~~~~~~~~~~~~lL~~l~~~s~~a~~~vLr 400 (696)
T PF14838_consen 355 --RALVKYFFLCLHEKDVSGKQEGLKRCCQLLSRLCSYSPAARKAVLR 400 (696)
T ss_pred --HHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 133344432 22222333466777788887777 788876653
No 77
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=81.27 E-value=4.4 Score=27.73 Aligned_cols=53 Identities=26% Similarity=0.244 Sum_probs=39.4
Q ss_pred cchhhHHHHHHhcCCCh-hHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhh
Q 048744 60 EVSEPATEALVNLSQNS-ELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNL 113 (312)
Q Consensus 60 ~~~~~Al~~LiNLS~d~-~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNL 113 (312)
.++..|+.+|=+++... ...+. .-...++.++..+.|+++.....||--|.||
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 35677889998887543 33322 2247888999999998888888999888875
No 78
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=80.98 E-value=44 Score=32.76 Aligned_cols=160 Identities=21% Similarity=0.253 Sum_probs=104.1
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhc-cC--ccchhhHHHH---HHhcCCChhHHHHhhh
Q 048744 11 FLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLS-EN--KEVSEPATEA---LVNLSQNSELAGKMVQ 84 (312)
Q Consensus 11 FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~-d~--~~~~~~Al~~---LiNLS~d~~~~~~l~~ 84 (312)
+|++. .+||..|...+.=+..+.+..+.+.+.. +=--+++.+. +. ..++.+|++. ++..-+.+ +. ..
T Consensus 34 lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~--id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~---~~-~~ 106 (371)
T PF14664_consen 34 LLSDS-KEVRAAGYRILRYLISDEESLQILLKLH--IDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP---KE-IP 106 (371)
T ss_pred HCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcC--CchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc---cc-CC
Confidence 45555 9999999999988888877777665532 1112333332 22 3355567654 44442221 11 24
Q ss_pred hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHh
Q 048744 85 MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVN 164 (312)
Q Consensus 85 ~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~N 164 (312)
.+.+..++....+++..+...|...|+=++-.+... +... .| +..|++.+..|.+. --+.+..+|..
T Consensus 107 ~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l--v~~~-----gG--~~~L~~~l~d~~~~----~~~~l~~~lL~ 173 (371)
T PF14664_consen 107 RGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL--VAEC-----GG--IRVLLRALIDGSFS----ISESLLDTLLY 173 (371)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH--HHHc-----CC--HHHHHHHHHhccHh----HHHHHHHHHHH
Confidence 478888999998899999999999999888776422 2222 23 67888888876543 23557888889
Q ss_pred hcCChhhhhhhcccccchhhhhhhccc
Q 048744 165 ISKKEAGRKILLDPKRGLLKQIVRQFD 191 (312)
Q Consensus 165 lS~~~~gR~~~l~~~~~~l~~ll~~~~ 191 (312)
+=..|+-|+|+...-. +-..+-|+++
T Consensus 174 lLd~p~tR~yl~~~~d-L~~l~apftd 199 (371)
T PF14664_consen 174 LLDSPRTRKYLRPGFD-LESLLAPFTD 199 (371)
T ss_pred HhCCcchhhhhcCCcc-HHHHHHhhhh
Confidence 9999999999976432 2233445544
No 79
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=79.20 E-value=1.1 Score=39.86 Aligned_cols=116 Identities=17% Similarity=0.144 Sum_probs=63.2
Q ss_pred CcchHHHHHhcc----CCCCHHHHHHHHHHHHhcCCCc---cchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhc
Q 048744 1 MANELEELLGFL----CSPSPSVKKAAVDIVRGLTGSE---DGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNL 72 (312)
Q Consensus 1 m~~~l~ELv~FL----~~~~~~vR~~Al~~llgls~~~---~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNL 72 (312)
|..+++++...| ++.+=+.|..|+..|.++.... +....++..-..++..+...+.|. ..+++.|+.++-.+
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l 80 (228)
T PF12348_consen 1 LEYEFEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDL 80 (228)
T ss_dssp -----GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 456778888888 5678899999999998886443 233333221112445777777777 78899999888888
Q ss_pred CCCh-hHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744 73 SQNS-ELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD 117 (312)
Q Consensus 73 S~d~-~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~ 117 (312)
...- .-.+.. -..+++.+++.+.+++....+.+...|..+..+-
T Consensus 81 ~~~l~~~~~~~-~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~ 125 (228)
T PF12348_consen 81 ARQLGSHFEPY-ADILLPPLLKKLGDSKKFIREAANNALDAIIESC 125 (228)
T ss_dssp HHHHGGGGHHH-HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS
T ss_pred HHHHhHhHHHH-HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHC
Confidence 6431 101111 1246777888888877777777777777666544
No 80
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=78.45 E-value=38 Score=35.58 Aligned_cols=183 Identities=17% Similarity=0.123 Sum_probs=121.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC-CChhHHHHhhhhhHHHHH
Q 048744 14 SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS-QNSELAGKMVQMGMIKTA 91 (312)
Q Consensus 14 ~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS-~d~~~~~~l~~~~~i~~l 91 (312)
....++++.|+.-+..++-+-...+-=++.+ .....|+.++.|+ ..+.+-++.++.|+- .....++..+..|+|..+
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~-dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRN-DVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccc-hhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 4577999999998888875532211102333 4678899999999 789999999999996 457788999999999999
Q ss_pred HHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCC-hh
Q 048744 92 MDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKK-EA 170 (312)
Q Consensus 92 v~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~-~~ 170 (312)
.+++.++.+.....+.-.|-|+.-......+..-..+ .-.+++.+|+...+-. -.+-.-.++.|++-- .+
T Consensus 467 ~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~k------i~a~~i~~l~nd~d~~---Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 467 ESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAK------IPANLILDLINDPDWA---VQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHH------hhHHHHHHHHhCCCHH---HHHHHHHHHHHhhcCcHH
Confidence 9999999998888888899999887765544222111 1235666666543211 122234788887654 44
Q ss_pred hhhhhcccccchhhhhhhcc--cCCchhhHhhHHHHHH
Q 048744 171 GRKILLDPKRGLLKQIVRQF--DSSNYLRKKGVSGTIR 206 (312)
Q Consensus 171 gR~~~l~~~~~~l~~ll~~~--~~~s~iRR~gva~~ik 206 (312)
.=.|+++.-.-.+..+.+++ +.++++-=++-+-..+
T Consensus 538 svdfll~~~~~~ld~i~l~lk~a~~~pi~ie~~~~~~~ 575 (678)
T KOG1293|consen 538 SVDFLLEKFKDVLDKIDLQLKIAIGSPILIEFLAKKMR 575 (678)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCceehhhHHHHHH
Confidence 55677776544444444443 3466666565554443
No 81
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.30 E-value=24 Score=39.30 Aligned_cols=188 Identities=19% Similarity=0.191 Sum_probs=99.3
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHH---HHhcCCChhHHHHhhhhh
Q 048744 11 FLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEA---LVNLSQNSELAGKMVQMG 86 (312)
Q Consensus 11 FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~---LiNLS~d~~~~~~l~~~~ 86 (312)
|.++...-+|+.|-+.|--++..+++.-..-++.+.+-..|.....+. ..++..++.| |+-++. .+.... +...
T Consensus 662 ~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-~e~~~~-i~k~ 739 (1176)
T KOG1248|consen 662 FENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-AEHCDL-IPKL 739 (1176)
T ss_pred hhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-HHHHHH-HHHH
Confidence 444668899999999999998886664433332222222333333333 3445555555 444444 222222 2223
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHH-HHHhh
Q 048744 87 MIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGS-ILVNI 165 (312)
Q Consensus 87 ~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~-vl~Nl 165 (312)
+.+.++.+ .+.+......+..+|-++++ +...++.+.++ ....+...+..+.-|-.+ +..+..++ +++ +
T Consensus 740 I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~-~~~~lnefl~~Isagl~g---d~~~~~as~Iva-i 809 (1176)
T KOG1248|consen 740 IPEVILSL-KEVNVKARRNAFALLVFIGA----IQSSLDDGNEP-ASAILNEFLSIISAGLVG---DSTRVVASDIVA-I 809 (1176)
T ss_pred HHHHHHhc-ccccHHHHhhHHHHHHHHHH----HHhhhcccccc-hHHHHHHHHHHHHhhhcc---cHHHHHHHHHHH-H
Confidence 33444444 55555566678889998886 33444555443 122456666666555222 22333433 221 1
Q ss_pred cCChhhhhhhcccccchhhhhhh----cccCCchhhHhhHHHHHHhhhccc
Q 048744 166 SKKEAGRKILLDPKRGLLKQIVR----QFDSSNYLRKKGVSGTIRNCCFEA 212 (312)
Q Consensus 166 S~~~~gR~~~l~~~~~~l~~ll~----~~~~~s~iRR~gva~~ikNccF~~ 212 (312)
+.+-.--.-+++.. .+.+++. ++.+.|+--|.++++.||=||..-
T Consensus 810 ~~il~e~~~~ld~~--~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~ 858 (1176)
T KOG1248|consen 810 THILQEFKNILDDE--TLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF 858 (1176)
T ss_pred HHHHHHHhccccHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC
Confidence 11111111122221 3333333 456788889999999999999753
No 82
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=77.83 E-value=15 Score=36.63 Aligned_cols=110 Identities=18% Similarity=0.101 Sum_probs=61.9
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhh---cccc-hHHHHHHhhccCccchhhHHHHHHhcCCChhHHH
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSK---YSKI-ALPSLARLLSENKEVSEPATEALVNLSQNSELAG 80 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~---~~~~-~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~~~ 80 (312)
++.|+..+.+.+++||..|+..+.-+ |+.+....+.. ..+. .-..+...+.-. ....|+.-|+-|++++.+..
T Consensus 180 ~~~L~~al~d~~~~VR~aA~~al~~l-G~~~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~~a~~~L~~ll~d~~vr~ 256 (410)
T TIGR02270 180 ESTLRLYLRDSDPEVRFAALEAGLLA-GSRLAWGVCRRFQVLEGGPHRQRLLVLLAVA--GGPDAQAWLRELLQAAATRR 256 (410)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHc-CCHhHHHHHHHHHhccCccHHHHHHHHHHhC--CchhHHHHHHHHhcChhhHH
Confidence 45566666777777777777766444 33332222211 0001 111111111111 11256677777887766553
Q ss_pred H-------hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccc
Q 048744 81 K-------MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYG 119 (312)
Q Consensus 81 ~-------l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~ 119 (312)
. +++...++.|+..+.++. .+..|--.++.+|--+-.
T Consensus 257 ~a~~AlG~lg~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~l~ 300 (410)
T TIGR02270 257 EALRAVGLVGDVEAAPWCLEAMREPP--WARLAGEAFSLITGMDVA 300 (410)
T ss_pred HHHHHHHHcCCcchHHHHHHHhcCcH--HHHHHHHHHHHhhCCCcc
Confidence 3 233467888888887654 889999999999987743
No 83
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=76.61 E-value=17 Score=33.94 Aligned_cols=101 Identities=22% Similarity=0.234 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCccchhhhhhcccc------hHH-HHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhh
Q 048744 14 SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKI------ALP-SLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQM 85 (312)
Q Consensus 14 ~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~------~i~-~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~ 85 (312)
.+...-|..|+-++--.-.++.|..+|.+..+. .+. -+..+++.. ....|+++.|.++||+++..++.|...
T Consensus 179 ~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~c 258 (293)
T KOG3036|consen 179 SGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSC 258 (293)
T ss_pred cccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 456667777777777777789998887653321 223 334455666 678999999999999999998888642
Q ss_pred --hHHH-HHHHHHcCCCChhHHHHHHHHHhhc
Q 048744 86 --GMIK-TAMDLLYKPDSSITRLLVMLLVNLT 114 (312)
Q Consensus 86 --~~i~-~lv~~i~~~~~~~ad~a~mLLsNLT 114 (312)
+-+. --++.+...+........|++-||.
T Consensus 259 lPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 259 LPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC 290 (293)
T ss_pred CcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence 2222 2333333345555556677777775
No 84
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=75.95 E-value=50 Score=32.88 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=16.6
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhc
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGL 30 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgl 30 (312)
...|+..|+++.|.||..++ ..++.
T Consensus 119 ~~~L~~~L~~~~p~vR~aal-~al~~ 143 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGL-AALGA 143 (410)
T ss_pred HHHHHHHhcCCChHHHHHHH-HHHHh
Confidence 45577777777777777777 44444
No 85
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=75.06 E-value=88 Score=30.69 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=90.5
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHH--HHhhccCc-cchhhHHHHHHhcC-CChhHHH
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSL--ARLLSENK-EVSEPATEALVNLS-QNSELAG 80 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L--~~L~~d~~-~~~~~Al~~LiNLS-~d~~~~~ 80 (312)
++-++..+...+.+|-+.|.+.+-.++-.+++.+.||.. ....++ ..|...-. -.+---+...|.++ -.+++++
T Consensus 130 lklildcIggeddeVAkAAiesikrialfpaaleaiFeS--ellDdlhlrnlaakcndiaRvRVleLIieifSiSpesan 207 (524)
T KOG4413|consen 130 LKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFES--ELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESAN 207 (524)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhccc--ccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHh
Confidence 455677778889999999999999999999999999864 233333 22222222 22334566667775 4577777
Q ss_pred HhhhhhHHHHHHHHHcCCCChhH-HHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhH-
Q 048744 81 KMVQMGMIKTAMDLLYKPDSSIT-RLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHV- 158 (312)
Q Consensus 81 ~l~~~~~i~~lv~~i~~~~~~~a-d~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~l- 158 (312)
+.-+.|.+..+..-+...+..+. -.+..+..-|.-.+.|..-+-|. | +.+++--...|.+..+..++.|+
T Consensus 208 eckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQe------g--lIdlicnIIsGadsdPfekfralm 279 (524)
T KOG4413|consen 208 ECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQE------G--LIDLICNIISGADSDPFEKFRALM 279 (524)
T ss_pred HhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchh------h--HHHHHHHHhhCCCCCcHHHHHHHH
Confidence 77777888877777765444332 23445555566555554433331 1 34444444555443332233333
Q ss_pred --HHHHHhhcCC
Q 048744 159 --GSILVNISKK 168 (312)
Q Consensus 159 --a~vl~NlS~~ 168 (312)
+.+|.|..-.
T Consensus 280 gfgkffgkeaim 291 (524)
T KOG4413|consen 280 GFGKFFGKEAIM 291 (524)
T ss_pred HHHHHhcchHHh
Confidence 4455554433
No 86
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=74.39 E-value=28 Score=34.41 Aligned_cols=208 Identities=21% Similarity=0.257 Sum_probs=108.9
Q ss_pred HHHHHhccC-CCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhh-ccC-ccchhhHHHHHHhcCCChhHHH
Q 048744 5 LEELLGFLC-SPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLL-SEN-KEVSEPATEALVNLSQNSELAG 80 (312)
Q Consensus 5 l~ELv~FL~-~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~-~d~-~~~~~~Al~~LiNLS~d~~~~~ 80 (312)
+..++.+.. ...+..|..|++.+.++.-. .++- .+ +.++..+.... +.. ......++.+++=++.--..+.
T Consensus 191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l----~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL----DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH----HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 556777766 45688999999998888633 1111 11 12444444444 223 5666777777766652111111
Q ss_pred HhhhhhHHHHHHHHHcCCC--ChhHHHHHHHHHh----hcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCc
Q 048744 81 KMVQMGMIKTAMDLLYKPD--SSITRLLVMLLVN----LTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDP 154 (312)
Q Consensus 81 ~l~~~~~i~~lv~~i~~~~--~~~ad~a~mLLsN----LT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~ 154 (312)
.=....++..+++.+.+++ ...|+..-.+++- +++......+++=.. ..=...+++|++.|-...... .
T Consensus 266 ~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQ--R~F~~~~p~L~~~~~~~~~~~---k 340 (415)
T PF12460_consen 266 HPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQ--RFFTQVLPKLLEGFKEADDEI---K 340 (415)
T ss_pred CchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhH--HHHHHHHHHHHHHHhhcChhh---H
Confidence 1001245677777777754 2344444455443 122111122222111 011113668888887765432 2
Q ss_pred hhhH---HHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhcc-Chhhhh
Q 048744 155 FEHV---GSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISE-FLWPAL 230 (312)
Q Consensus 155 ~~~l---a~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~-~~lp~l 230 (312)
-.|+ ++++.|+ | ...+...-..++..++..+..++..-|.++..|++....+. + .++.+.. .++|++
T Consensus 341 ~~yL~ALs~ll~~v---P--~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~--~--~~i~~hl~sLI~~L 411 (415)
T PF12460_consen 341 SNYLTALSHLLKNV---P--KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA--P--ELISEHLSSLIPRL 411 (415)
T ss_pred HHHHHHHHHHHhhC---C--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC--H--HHHHHHHHHHHHHH
Confidence 4455 4444444 4 33344332234444555566677778899999999999876 3 3444332 455655
Q ss_pred h
Q 048744 231 L 231 (312)
Q Consensus 231 L 231 (312)
|
T Consensus 412 L 412 (415)
T PF12460_consen 412 L 412 (415)
T ss_pred H
Confidence 4
No 87
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=74.35 E-value=16 Score=40.83 Aligned_cols=193 Identities=17% Similarity=0.236 Sum_probs=106.4
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCC----ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHH
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGS----EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELA 79 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~----~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~ 79 (312)
++-++.++.++-++||..|++.|..+-+. +..-+.||. +-++|.|..+..|. ....+-|+.. ||
T Consensus 464 lPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~--eYlfP~L~~l~~d~~~~~vRiayAs--nl------- 532 (1431)
T KOG1240|consen 464 LPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFP--EYLFPHLNHLLNDSSAQIVRIAYAS--NL------- 532 (1431)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhH--hhhhhhhHhhhccCccceehhhHHh--hH-------
Confidence 56678888999999999999988665433 222234664 36889999999994 5555555432 11
Q ss_pred HHhhhh--hHHHHHHH-----HHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCC
Q 048744 80 GKMVQM--GMIKTAMD-----LLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASD 152 (312)
Q Consensus 80 ~~l~~~--~~i~~lv~-----~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~ 152 (312)
..|++- +|++.... +..+|++. |.-+..-.+=++.+.. .+.+.+-.|+.+...
T Consensus 533 a~LA~tA~rFle~~q~~~~~g~~n~~nse------------t~~~~~~~~~~~~L~~-----~V~~~v~sLlsd~~~--- 592 (1431)
T KOG1240|consen 533 AQLAKTAYRFLELTQELRQAGMLNDPNSE------------TAPEQNYNTELQALHH-----TVEQMVSSLLSDSPP--- 592 (1431)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCcccc------------cccccccchHHHHHHH-----HHHHHHHHHHcCCch---
Confidence 222221 44443333 34445553 2222211111122211 144555555555321
Q ss_pred CchhhHH-HHHHhhcCChhhhhhhccccc-c-hhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhh
Q 048744 153 DPFEHVG-SILVNISKKEAGRKILLDPKR-G-LLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPA 229 (312)
Q Consensus 153 ~~~~~la-~vl~NlS~~~~gR~~~l~~~~-~-~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~ 229 (312)
++= ..+.| +-.=-.||-+.+. . ++..|.-++..+...-|+.....|--+|+-. .+-+-++.++|+
T Consensus 593 ----~Vkr~Lle~---i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V-----G~rs~seyllPL 660 (1431)
T KOG1240|consen 593 ----IVKRALLES---IIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFV-----GWRSVSEYLLPL 660 (1431)
T ss_pred ----HHHHHHHHH---HHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEE-----eeeeHHHHHHHH
Confidence 111 23333 2233445554442 2 4455555666567777887777777777632 223345678899
Q ss_pred hhhcccCCCCC
Q 048744 230 LLLPVAGNKVY 240 (312)
Q Consensus 230 lLlPlaG~ee~ 240 (312)
|..-|-++||+
T Consensus 661 l~Q~ltD~EE~ 671 (1431)
T KOG1240|consen 661 LQQGLTDGEEA 671 (1431)
T ss_pred HHHhccCcchh
Confidence 98888887764
No 88
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=73.47 E-value=14 Score=31.68 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=65.2
Q ss_pred hHHHHHHhhccC--ccchhhHHHHHHhcCCChhHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHh
Q 048744 47 ALPSLARLLSEN--KEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLL 124 (312)
Q Consensus 47 ~i~~L~~L~~d~--~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll 124 (312)
.+..|+.=.... .........-|-|..=||..-+.|.+.+.+...++.+..++..+......-|+|+.-...+++-+.
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ 96 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIR 96 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHH
Confidence 455555544333 344556667799999999999999999999999999999999999999999999999998877665
Q ss_pred hhh
Q 048744 125 QVE 127 (312)
Q Consensus 125 ~~~ 127 (312)
..+
T Consensus 97 ea~ 99 (173)
T KOG4646|consen 97 EAL 99 (173)
T ss_pred Hhc
Confidence 543
No 89
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=73.02 E-value=47 Score=33.36 Aligned_cols=93 Identities=25% Similarity=0.257 Sum_probs=63.3
Q ss_pred HHHHHHhcCCCccchhhhhhcccchHHHHHHhh---------cc--CccchhhHHHHHHhcC-CChhHHHHhhhhhHHHH
Q 048744 23 AVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL---------SE--NKEVSEPATEALVNLS-QNSELAGKMVQMGMIKT 90 (312)
Q Consensus 23 Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~---------~d--~~~~~~~Al~~LiNLS-~d~~~~~~l~~~~~i~~ 90 (312)
|++.|--|+-+..+.+.|+.. ..+..|.++. .+ +..++..|++||.|+- ..+..+...++.+....
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~--~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~ 78 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTE--EGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEK 78 (446)
T ss_pred CHHHHHHHccCcccchhhccH--HHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHH
Confidence 355666677777777777654 3466666654 22 2678999999999997 56777777777788899
Q ss_pred HHHHHcCC-----CChhHHHHHHHHHhhcCCc
Q 048744 91 AMDLLYKP-----DSSITRLLVMLLVNLTQLD 117 (312)
Q Consensus 91 lv~~i~~~-----~~~~ad~a~mLLsNLT~~~ 117 (312)
++..+.+. .+...=+.+.||.=+|...
T Consensus 79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~ 110 (446)
T PF10165_consen 79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALR 110 (446)
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhcCC
Confidence 99988876 2333335666666555444
No 90
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=72.21 E-value=13 Score=32.16 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=58.3
Q ss_pred HHHHHHhhccCc-------cchhhHHHHHHhcCCChhHHHHhhhhhHHHHHHHHHcCCC--ChhHHHHHHHHHhhcCCcc
Q 048744 48 LPSLARLLSENK-------EVSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPD--SSITRLLVMLLVNLTQLDY 118 (312)
Q Consensus 48 i~~L~~L~~d~~-------~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~lv~~i~~~~--~~~ad~a~mLLsNLT~~~~ 118 (312)
+..|+..+.++. .+-..+++|+++|-....+.=..++..||..++.++..+. ......+..+|-|+.-++.
T Consensus 13 l~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~ 92 (160)
T PF11841_consen 13 LTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSP 92 (160)
T ss_pred HHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCH
Confidence 678888887763 3455689999999987766666778899999999998644 5677788899999988776
Q ss_pred chHHH
Q 048744 119 GISSL 123 (312)
Q Consensus 119 ~~~~l 123 (312)
.....
T Consensus 93 ~ly~~ 97 (160)
T PF11841_consen 93 KLYQL 97 (160)
T ss_pred HHHHH
Confidence 54433
No 91
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=72.04 E-value=9.9 Score=29.72 Aligned_cols=69 Identities=23% Similarity=0.264 Sum_probs=53.1
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ 74 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~ 74 (312)
+.+++.+.-|++|-+-||.+|+..|..+-.+.+ . ..... +.++.-+...++|. +-+=-.|+.+|.-|+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~-~~~~~-~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-E-PVIDI-PKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-c-chhhH-HHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 357888999999999999999999999876655 1 11122 25677777888888 8888888888888873
No 92
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=71.28 E-value=10 Score=32.03 Aligned_cols=52 Identities=27% Similarity=0.367 Sum_probs=37.6
Q ss_pred HHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCccchhhHHHHHH
Q 048744 8 LLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALV 70 (312)
Q Consensus 8 Lv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~Li 70 (312)
+..+|.+++++|++.|++.|+.+-.. .|..+ -+.|.+|+.|.. -+|.++.+.
T Consensus 22 ~~~LL~~~d~~vQklAL~cll~~k~~-----~l~pY----~d~L~~Lldd~~--frdeL~~f~ 73 (141)
T PF07539_consen 22 LLRLLSSRDPEVQKLALDCLLTWKDP-----YLTPY----KDNLENLLDDKT--FRDELTTFN 73 (141)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCcH-----HHHhH----HHHHHHHcCcch--HHHHHHhhc
Confidence 56788899999999999999998422 24333 247788887763 466776665
No 93
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=70.89 E-value=33 Score=27.22 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHh-cCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhhhHHHHHHHHH
Q 048744 18 SVKKAAVDIVRG-LTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLL 95 (312)
Q Consensus 18 ~vR~~Al~~llg-ls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~lv~~i 95 (312)
+||..|+++|.. +.-.--.-+.+.+ ...+++.|.+-.+.. ......++..|-.|...+.....+.+.|++++ ++.+
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~-~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~f-L~kl 79 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVK-ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRF-LSKL 79 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHcc-HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHH-HHHH
Confidence 789999998842 2211111112332 235788888888888 55666777777788888888888777788888 5555
Q ss_pred cC
Q 048744 96 YK 97 (312)
Q Consensus 96 ~~ 97 (312)
+.
T Consensus 80 r~ 81 (98)
T PF14726_consen 80 RP 81 (98)
T ss_pred Hh
Confidence 43
No 94
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=70.31 E-value=8.5 Score=34.15 Aligned_cols=68 Identities=29% Similarity=0.273 Sum_probs=44.3
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCCcc-chhhhhhcc--cchHHHHHHhhccC-ccchhhHHHHHHhcC
Q 048744 6 EELLGFLCSPSPSVKKAAVDIVRGLTGSED-GLQSLSKYS--KIALPSLARLLSEN-KEVSEPATEALVNLS 73 (312)
Q Consensus 6 ~ELv~FL~~~~~~vR~~Al~~llgls~~~~-~~~~i~~~~--~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS 73 (312)
..+.....+.+|.+|..+++.+.-.-..-. ....+.... +.+++.+..++.|. +.+++.|-.++..+.
T Consensus 134 ~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 134 EILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 445556678999999999998877654422 122222211 24788999999998 888888888888874
No 95
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=69.65 E-value=59 Score=35.86 Aligned_cols=204 Identities=20% Similarity=0.173 Sum_probs=107.1
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCC--ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS--EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAG 80 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~--~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~ 80 (312)
-++||.+|++..+...|...+..+.-+-.. ..+-..+.. .++..+--|+++. ..+...|+.+|--+...+...-
T Consensus 652 il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e---~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l 728 (1233)
T KOG1824|consen 652 ILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE---AVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSL 728 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 478999999988888898877766544322 111111111 3555666777776 7888999999988876544333
Q ss_pred HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHh----hcCCccc-hHHHhhhh---hhhhh-------hh-hHHHHHHHHh
Q 048744 81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVN----LTQLDYG-ISSLLQVE---DEQIQ-------GL-YVMKLVRSFC 144 (312)
Q Consensus 81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsN----LT~~~~~-~~~ll~~~---~e~~~-------~~-~l~~Ll~~f~ 144 (312)
-.....++..++..+++|--..-.+.+++++= .|+.+.- ...++... ..... .+ .+.+-+-.++
T Consensus 729 ~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt 808 (1233)
T KOG1824|consen 729 LKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALT 808 (1233)
T ss_pred HHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHH
Confidence 33334667777777777665444444444331 1222211 11111111 00000 00 1222222221
Q ss_pred cCCCC-CC-----------CCchhhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhc
Q 048744 145 RSSSE-AS-----------DDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCF 210 (312)
Q Consensus 145 ~~~~~-~~-----------~~~~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF 210 (312)
..... ++ .+.-.---.+|+=+|==.-||..-+.+.+++-..++.-+.|+|.--+..++-++=++.-
T Consensus 809 ~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~v 886 (1233)
T KOG1824|consen 809 CACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAV 886 (1233)
T ss_pred HhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhc
Confidence 11110 00 00000112556666666667777776666554555555677777777777777777766
No 96
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.34 E-value=70 Score=34.15 Aligned_cols=94 Identities=15% Similarity=0.246 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhhhHHHHHH
Q 048744 14 SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQMGMIKTAM 92 (312)
Q Consensus 14 ~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~lv 92 (312)
+++|.+|..|+....-++... +.. .+...|.+.+.|+ +.+.+.|..+..++=.++ .+...+.|++..|-
T Consensus 97 d~np~iR~lAlrtm~~l~v~~-----i~e---y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~--~~~~~~~gl~~~L~ 166 (734)
T KOG1061|consen 97 DPNPLIRALALRTMGCLRVDK-----ITE---YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID--PDLVEDSGLVDALK 166 (734)
T ss_pred CCCHHHHHHHhhceeeEeehH-----HHH---HHHHHHHHhccCCChhHHHHHHHHHHHhhcCC--hhhccccchhHHHH
Confidence 357777777776655553221 111 3566888888888 888888888888887654 23333459999999
Q ss_pred HHHcCCCChhHHHHHHHHHhhcCCc
Q 048744 93 DLLYKPDSSITRLLVMLLVNLTQLD 117 (312)
Q Consensus 93 ~~i~~~~~~~ad~a~mLLsNLT~~~ 117 (312)
+++.|.++...-.|...|+.+...+
T Consensus 167 ~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 167 DLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHhcCCCchHHHHHHHHHHHHHHhC
Confidence 9999988877767777777765555
No 97
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=68.90 E-value=33 Score=34.68 Aligned_cols=107 Identities=13% Similarity=0.118 Sum_probs=77.6
Q ss_pred HHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhhhHHHHHHHHHcC--
Q 048744 21 KAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYK-- 97 (312)
Q Consensus 21 ~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~lv~~i~~-- 97 (312)
+.+.++.+-+...++.-..++.-+ .+++-+...+..+ .....-+..++=|+......+.++++.++++.+++.+..
T Consensus 291 k~~~el~vllltGDeSMq~L~~~p-~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~ 369 (604)
T KOG4500|consen 291 KRIAELDVLLLTGDESMQKLHADP-QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEK 369 (604)
T ss_pred HhhhhHhhhhhcCchHHHHHhcCc-HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444555677643 4788887777555 777777889999999999999999999999999998754
Q ss_pred ---CCChhHHHHHHHHHhhcCCccchHHHhhhhh
Q 048744 98 ---PDSSITRLLVMLLVNLTQLDYGISSLLQVED 128 (312)
Q Consensus 98 ---~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~ 128 (312)
++-...-.++..|=||.-.-.+..++++.|.
T Consensus 370 ~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGv 403 (604)
T KOG4500|consen 370 DVDGNVERQHACLSALRNLMIPVSNKAHFAPAGV 403 (604)
T ss_pred CCCccchhHHHHHHHHHhccccCCchhhccccch
Confidence 2333444578889999888888888877753
No 98
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.21 E-value=36 Score=36.49 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHhcCHhHHHHHHhCCcch
Q 048744 266 PEIRIQALESIYLITLQEAGLRAFWSVNGPR 296 (312)
Q Consensus 266 ~~Ir~~llE~Ll~L~~t~~gR~~lr~~~vy~ 296 (312)
..|.-.++|++.++=+.+..|-.+|-.|-|-
T Consensus 432 ~~ii~~l~~~~~~irS~ki~rgalwi~GeYc 462 (948)
T KOG1058|consen 432 ASIIEKLLETFPQIRSSKICRGALWILGEYC 462 (948)
T ss_pred HHHHHHHHHhhhhhcccccchhHHHHHHHHH
Confidence 5677788889999999999999999888775
No 99
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.31 E-value=29 Score=37.62 Aligned_cols=186 Identities=15% Similarity=0.147 Sum_probs=113.5
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM 82 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l 82 (312)
.+.|-+..++++.+-+|..|+.-+.-+-........++.. +++...+..++|. +-+--+|+..++-||.-
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~e--kvl~i~ld~LkdedsyvyLnaI~gv~~Lcev------- 798 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGE--KVLAIALDTLKDEDSYVYLNAIRGVVSLCEV------- 798 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHH--HHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------
Confidence 4889999999999999999999999987655555566553 6788888888888 88878888877766643
Q ss_pred hhhhHHHHHHHHHcCCCChh-HHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHH
Q 048744 83 VQMGMIKTAMDLLYKPDSSI-TRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSI 161 (312)
Q Consensus 83 ~~~~~i~~lv~~i~~~~~~~-ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~v 161 (312)
-..++++.+.++=.+.+..+ .|.... . -+.+-+++++..|-..+ |...|++.|.+|..+.. -.|=++-
T Consensus 799 y~e~il~dL~e~Y~s~k~k~~~d~~lk-V------GEai~k~~qa~Gel~~~-y~~~Li~tfl~gvrepd---~~~RaSS 867 (982)
T KOG4653|consen 799 YPEDILPDLSEEYLSEKKKLQTDYRLK-V------GEAILKVAQALGELVFK-YKAVLINTFLSGVREPD---HEFRASS 867 (982)
T ss_pred cchhhHHHHHHHHHhcccCCCccceeh-H------HHHHHHHHHHhccHHHH-HHHHHHHHHHHhcCCch---HHHHHhH
Confidence 12255565666333322222 221111 1 12334445544332233 66799999999965321 2234555
Q ss_pred HHhhc---CChhhh--hhhcccccchhhhhhhcc-cCCchhhHhhHHHHHHhhhccch
Q 048744 162 LVNIS---KKEAGR--KILLDPKRGLLKQIVRQF-DSSNYLRKKGVSGTIRNCCFEAE 213 (312)
Q Consensus 162 l~NlS---~~~~gR--~~~l~~~~~~l~~ll~~~-~~~s~iRR~gva~~ikNccF~~~ 213 (312)
++|+- |.-.+| .+|.+ +++.++... ..+|+--|+.++..|+.|--.+.
T Consensus 868 ~a~lg~Lcq~~a~~vsd~~~e----v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 868 LANLGQLCQLLAFQVSDFFHE----VLQLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HHHHHHHHHHHhhhhhHHHHH----HHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 55544 333322 23333 344444422 24888888889988877765444
No 100
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=66.52 E-value=31 Score=32.48 Aligned_cols=60 Identities=30% Similarity=0.345 Sum_probs=45.2
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN 75 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d 75 (312)
.++.++.++.++++.+|..|...+..+ .. ..+++.|..++.+. +.++..|+.+|.++-..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~-----------~~-~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~ 104 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGEL-----------GS-EEAVPLLRELLSDEDPRVRDAAADALGELGDP 104 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhh-----------ch-HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh
Confidence 578899999999999999998873222 11 14688899999888 77888888877776543
No 101
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=64.87 E-value=1.3e+02 Score=28.69 Aligned_cols=202 Identities=15% Similarity=0.219 Sum_probs=108.4
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCC-Cc-cchhhhhhcccchHHHHHHhhccCc--------------cchhhHHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTG-SE-DGLQSLSKYSKIALPSLARLLSENK--------------EVSEPATE 67 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~-~~-~~~~~i~~~~~~~i~~L~~L~~d~~--------------~~~~~Al~ 67 (312)
.++-+..-|++.++.+...|+..+-.... .. .-...++..-+--.+.+.+++.-.. .++...+.
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 35667778888888888888888877665 21 1122233333333455656542221 34444555
Q ss_pred HHHhcC--CChhHHHHhhhh-hHHHHHHHHHcCCCC-hhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHH
Q 048744 68 ALVNLS--QNSELAGKMVQM-GMIKTAMDLLYKPDS-SITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSF 143 (312)
Q Consensus 68 ~LiNLS--~d~~~~~~l~~~-~~i~~lv~~i~~~~~-~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f 143 (312)
-++.+- .++.++..+++. +.+..++..+.+... ........+-.++-..+ .+.+-....- .....+.+|+..|
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~-~v~r~~K~~~--fn~~~L~~l~~Ly 213 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS-SVSRSTKCKL--FNEWTLSQLASLY 213 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC-CCChhhhhhh--cCHHHHHHHHHHh
Confidence 544442 467778887766 667777777765333 33333444444555444 3433222110 1122577888877
Q ss_pred hcCCCCCCCCchhhHHHHHHhhcCChhhhhhhccc-----------------c-----cchhhhhhhccc-CCchhhHhh
Q 048744 144 CRSSSEASDDPFEHVGSILVNISKKEAGRKILLDP-----------------K-----RGLLKQIVRQFD-SSNYLRKKG 200 (312)
Q Consensus 144 ~~~~~~~~~~~~~~la~vl~NlS~~~~gR~~~l~~-----------------~-----~~~l~~ll~~~~-~~s~iRR~g 200 (312)
...+.....+--+.+=.+|..+...|..--.|-+. . +..+..++..+. ..+...++-
T Consensus 214 ~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp~e~~~q~~L 293 (330)
T PF11707_consen 214 SRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKPWEDDRQQEL 293 (330)
T ss_pred cccCCcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCCCccHHHHHH
Confidence 66544222222344445555655555554444432 0 124444544443 356677777
Q ss_pred HHHHHHhh
Q 048744 201 VSGTIRNC 208 (312)
Q Consensus 201 va~~ikNc 208 (312)
|..++++|
T Consensus 294 vl~Il~~~ 301 (330)
T PF11707_consen 294 VLKILKAC 301 (330)
T ss_pred HHHHHHHC
Confidence 88888776
No 102
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=64.84 E-value=5.7 Score=24.19 Aligned_cols=27 Identities=37% Similarity=0.534 Sum_probs=22.2
Q ss_pred hHHHHHHhhccC-ccchhhHHHHHHhcC
Q 048744 47 ALPSLARLLSEN-KEVSEPATEALVNLS 73 (312)
Q Consensus 47 ~i~~L~~L~~d~-~~~~~~Al~~LiNLS 73 (312)
++|.++.++.|. +.++..|+.+|-+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 478899999999 889999999998875
No 103
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.59 E-value=53 Score=34.13 Aligned_cols=188 Identities=20% Similarity=0.259 Sum_probs=99.8
Q ss_pred CcchHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCccchhhHHHHHHh--cC---CC
Q 048744 1 MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVN--LS---QN 75 (312)
Q Consensus 1 m~~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiN--LS---~d 75 (312)
|++.++-|+.-++++.|.++..|+..+.-+-... |+..+.... +++-.++-++++...-.-.-+...+| |. ..
T Consensus 248 ~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~-g~~~l~~~s-~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~ 325 (675)
T KOG0212|consen 248 YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP-GRDLLLYLS-GILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSS 325 (675)
T ss_pred cccchhhccccccCCcHHHHHHHHHHHHHHhcCC-Ccchhhhhh-hhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhh
Confidence 3456778999999999999999999997665442 223333333 56777888888874322222334455 22 22
Q ss_pred hhHHHHhhhh-hHHHHHHHHHcCCCCh---hHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCC
Q 048744 76 SELAGKMVQM-GMIKTAMDLLYKPDSS---ITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEAS 151 (312)
Q Consensus 76 ~~~~~~l~~~-~~i~~lv~~i~~~~~~---~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~ 151 (312)
+...+. ++. ..|+.+-.++.+.... .+=.+..+|-+=+..+ ++...+ . -...|+..++..+++-
T Consensus 326 ~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~q-----l~~h~~----~-if~tLL~tLsd~sd~v- 393 (675)
T KOG0212|consen 326 ERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQ-----LLVHND----S-IFLTLLKTLSDRSDEV- 393 (675)
T ss_pred hhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcch-----hhhhcc----H-HHHHHHHhhcCchhHH-
Confidence 222222 333 4566777777763332 2223333443322222 111111 0 1235555555544321
Q ss_pred CCchhhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhc
Q 048744 152 DDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCF 210 (312)
Q Consensus 152 ~~~~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF 210 (312)
.--.-++++++.+.++.+.+ +..++.|+..+..+...++.-..=+||..|-
T Consensus 394 ---vl~~L~lla~i~~s~~~~~~-----~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 394 ---VLLALSLLASICSSSNSPNL-----RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred ---HHHHHHHHHHHhcCcccccH-----HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 12234778888887777644 2355666664443444444334457888886
No 104
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.06 E-value=1.8e+02 Score=31.52 Aligned_cols=127 Identities=17% Similarity=0.171 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhh
Q 048744 136 VMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQ 215 (312)
Q Consensus 136 l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H 215 (312)
+-+++..+-+++.+....++|-||.|+.|--+.......++=+ .+.-+. .+. ++.--|.-++.+|-
T Consensus 254 iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE---~V~TI~-~I~-~~~~LrvlainiLg--------- 319 (866)
T KOG1062|consen 254 ILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYE---CVRTIM-DIR-SNSGLRVLAINILG--------- 319 (866)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHH---HHHHHH-hcc-CCchHHHHHHHHHH---------
Confidence 5688888888877666667888999999866555544444321 111111 123 33334454554442
Q ss_pred hHHHhhhccChhhhh-----hhcccCCCCCChhhhccCcHHhhh-h---hccCCCCCCChHHHHHHHHHHHHHhcCHhHH
Q 048744 216 LQNLLLISEFLWPAL-----LLPVAGNKVYKEEDTSKIPLELAS-A---LRIEREPVDDPEIRIQALESIYLITLQEAGL 286 (312)
Q Consensus 216 ~~~ll~~~~~~lp~l-----LlPlaG~ee~~~ee~~~lp~~Lq~-~---l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR 286 (312)
.+|...++=+.|+ ++-+-- =|...|. . +.==++ +|+.||...+|-++.|.....-|
T Consensus 320 --kFL~n~d~NirYvaLn~L~r~V~~-----------d~~avqrHr~tIleCL~D--pD~SIkrralELs~~lvn~~Nv~ 384 (866)
T KOG1062|consen 320 --KFLLNRDNNIRYVALNMLLRVVQQ-----------DPTAVQRHRSTILECLKD--PDVSIKRRALELSYALVNESNVR 384 (866)
T ss_pred --HHhcCCccceeeeehhhHHhhhcC-----------CcHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhccccHH
Confidence 2333222212221 111100 0222232 0 111234 49999999999999998877777
Q ss_pred HHHHh
Q 048744 287 RAFWS 291 (312)
Q Consensus 287 ~~lr~ 291 (312)
..+++
T Consensus 385 ~mv~e 389 (866)
T KOG1062|consen 385 VMVKE 389 (866)
T ss_pred HHHHH
Confidence 65544
No 105
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=63.99 E-value=68 Score=29.26 Aligned_cols=124 Identities=15% Similarity=0.146 Sum_probs=80.4
Q ss_pred hHHHHHHHHHc-------------CCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcC--CCCC
Q 048744 86 GMIKTAMDLLY-------------KPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRS--SSEA 150 (312)
Q Consensus 86 ~~i~~lv~~i~-------------~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~--~~~~ 150 (312)
.|+.+++..-+ .++..++...|.++.+|..+++|+..+...+ .+.++.++|..- ..+.
T Consensus 51 kF~kRLl~FyrP~~~rfs~~~~~~~~~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~-------ll~qia~~L~~~d~~~g~ 123 (226)
T PF14666_consen 51 KFFKRLLSFYRPFKYRFSNLDLNTKNNQKYVRVGCQLLETLLSSPEGIKYLSESK-------LLPQIAECLAQVDPMSGI 123 (226)
T ss_pred hHHHHHHHhcCCccccccccccccccchHHHHHHHHHHHHHHcCcHHHHHHHHcc-------HHHHHHHHHHHHhhhcCC
Confidence 88999888732 1235688899999999999999987654211 366777776554 1111
Q ss_pred -------------CCCchhhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhH
Q 048744 151 -------------SDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQ 217 (312)
Q Consensus 151 -------------~~~~~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~ 217 (312)
..-..+|+ .++.=+|+.+.|-+.+-+-+ +...+....+..+ |-.=+.-+|.|+=|..+.|+.
T Consensus 124 ~~~~~lfs~~~l~~tl~~~Yf-~~IG~lS~~~~Gl~lLe~~~--if~~l~~i~~~~~--~~~l~klil~~LDY~~~~~~R 198 (226)
T PF14666_consen 124 TAHDPLFSPQRLSTTLSRGYF-LFIGVLSSTPNGLKLLERWN--IFTMLYHIFSLSS--RDDLLKLILSSLDYSVDGHPR 198 (226)
T ss_pred cccccccCHHHHHhhHHHHHH-HHHHHHhCChhHHHHHHHCC--HHHHHHHHHccCc--hHHHHHHHHhhCCCCCccHHH
Confidence 12346888 66788999999998887654 3333333333222 345555677777777777764
Q ss_pred HHhh
Q 048744 218 NLLL 221 (312)
Q Consensus 218 ~ll~ 221 (312)
.+|.
T Consensus 199 ~iLs 202 (226)
T PF14666_consen 199 IILS 202 (226)
T ss_pred HHHH
Confidence 4444
No 106
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=60.45 E-value=13 Score=27.89 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHHHHHhcCHhHHHHHHhCC
Q 048744 265 DPEIRIQALESIYLITLQEAGLRAFWSVN 293 (312)
Q Consensus 265 d~~Ir~~llE~Ll~L~~t~~gR~~lr~~~ 293 (312)
...||-+.+-+|=++++|++|++.|.+.|
T Consensus 42 v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 42 VLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred ccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 68999999999999999999999999987
No 107
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.35 E-value=59 Score=35.41 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=69.2
Q ss_pred chHHHHHhccCC-CCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHH-HhhccC-ccchhhHHHHHHhcCCChhH
Q 048744 3 NELEELLGFLCS-PSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLA-RLLSEN-KEVSEPATEALVNLSQNSEL 78 (312)
Q Consensus 3 ~~l~ELv~FL~~-~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~-~L~~d~-~~~~~~Al~~LiNLS~d~~~ 78 (312)
+-++-||+.|++ .|+|+.-.|...+.-+-.- ++....... ..+||.|+ +|+.=. -.++++++.+|==+|..+.
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~--~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~- 287 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVD--EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP- 287 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeec--ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc-
Confidence 347889999996 5999999888777655433 333333222 25788774 343334 7889999999999998763
Q ss_pred HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744 79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ 115 (312)
Q Consensus 79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~ 115 (312)
..+++.|.+-.++.++.=-.-..-..|..+.+|..+
T Consensus 288 -~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 288 -KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred -HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456676766666665421111123356666666654
No 108
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=60.33 E-value=24 Score=36.56 Aligned_cols=110 Identities=17% Similarity=0.252 Sum_probs=72.6
Q ss_pred CcchHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCCChhHHH
Q 048744 1 MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAG 80 (312)
Q Consensus 1 m~~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~~~ 80 (312)
||+-++.|.+-|.+..|+||+.|.+.+..++.--+|.+ |. .++|-|+..++|.......++..|.-=+--..|-.
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~----~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~ 367 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQ----KIIPTLLDALADPSCYTPECLDSLGATTFVAEVDA 367 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HH----HHHHHHHHHhcCcccchHHHHHhhcceeeeeeecc
Confidence 57788999999999999999999999999987766654 32 36788888888875444445554433332222111
Q ss_pred Hhhhhh-HHHHHHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744 81 KMVQMG-MIKTAMDLLYKPDSSITRLLVMLLVNLTQLD 117 (312)
Q Consensus 81 ~l~~~~-~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~ 117 (312)
. ... .++.+-.-+.+.+...-+.++.+.-|+++.=
T Consensus 368 p--sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv 403 (569)
T KOG1242|consen 368 P--SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV 403 (569)
T ss_pred h--hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh
Confidence 0 112 2344444555666666688888888887654
No 109
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=55.34 E-value=73 Score=27.28 Aligned_cols=105 Identities=21% Similarity=0.191 Sum_probs=63.8
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC--ccchhhHHHHHHhc----CCChhHH
Q 048744 6 EELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN--KEVSEPATEALVNL----SQNSELA 79 (312)
Q Consensus 6 ~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~--~~~~~~Al~~LiNL----S~d~~~~ 79 (312)
.-+.++|+++++.-|-.++..+ +.+-...+.+.+..+....+..|...++.. +.+.+-|+.+|..+ .+.++..
T Consensus 28 ~ri~~LL~s~~~~~rw~G~~Ll-~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~ 106 (165)
T PF08167_consen 28 TRINSLLQSKSAYSRWAGLCLL-KVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLT 106 (165)
T ss_pred HHHHHHhCCCChhhHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 3467888888888887666544 333333334444344335788888888765 44555555555444 3557777
Q ss_pred HHhhhh---hHHHHHHHHHcCCCChhHHHHHHHHHhh
Q 048744 80 GKMVQM---GMIKTAMDLLYKPDSSITRLLVMLLVNL 113 (312)
Q Consensus 80 ~~l~~~---~~i~~lv~~i~~~~~~~ad~a~mLLsNL 113 (312)
.+++.. +++..++..+.+ +...+.++-.|+.+
T Consensus 107 Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 107 REIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred HHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 666543 677788887775 33444555555554
No 110
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=52.85 E-value=33 Score=31.85 Aligned_cols=81 Identities=21% Similarity=0.208 Sum_probs=58.2
Q ss_pred chhhHHHHHHhcCCChhHHHHhhhh-------hHHHHHHHHHcCCCC-hhHHHHHHHHHhhcCCccchHHHhhhhhhhhh
Q 048744 61 VSEPATEALVNLSQNSELAGKMVQM-------GMIKTAMDLLYKPDS-SITRLLVMLLVNLTQLDYGISSLLQVEDEQIQ 132 (312)
Q Consensus 61 ~~~~Al~~LiNLS~d~~~~~~l~~~-------~~i~~lv~~i~~~~~-~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~ 132 (312)
-.+-|+.+|--||-.+...+.|+.- .++..|+..+..++. .+.+.+.-||+||+..++.+...+.....
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~--- 216 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP--- 216 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc---
Confidence 3678999999999887777777642 455667777776554 68889999999999999887766554321
Q ss_pred hhhHHHHHHHHhcC
Q 048744 133 GLYVMKLVRSFCRS 146 (312)
Q Consensus 133 ~~~l~~Ll~~f~~~ 146 (312)
.+..|+.....+
T Consensus 217 --~i~~Li~FiE~a 228 (257)
T PF12031_consen 217 --CISHLIAFIEDA 228 (257)
T ss_pred --hHHHHHHHHHHH
Confidence 355666555444
No 111
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=52.11 E-value=41 Score=34.90 Aligned_cols=150 Identities=20% Similarity=0.207 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhhhHHHHHHHHHc
Q 048744 18 SVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLY 96 (312)
Q Consensus 18 ~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~lv~~i~ 96 (312)
+-+..|++.+=.+....+- .+...-+.+||.|...+.|. +.+++.+..||.+++.-.+..+. ..+++.+++.+.
T Consensus 269 rtK~aslellg~m~~~ap~--qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~ 343 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPK--QLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALA 343 (569)
T ss_pred hhHHHHHHHHHHHHHhchH--HHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhc
Confidence 3455555555444333221 12112225899999999999 89999999999999865443331 257899999999
Q ss_pred CCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCChhhhhhhc
Q 048744 97 KPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILL 176 (312)
Q Consensus 97 ~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~gR~~~l 176 (312)
+|+...-+..-+|++ =| +...-++ + .+..++-.+.+|..+.....-.-.+-++-|++.+=+-++.+-
T Consensus 344 dp~~~~~e~~~~L~~-tt--------FV~~V~~--p--sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~la 410 (569)
T KOG1242|consen 344 DPSCYTPECLDSLGA-TT--------FVAEVDA--P--SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLA 410 (569)
T ss_pred CcccchHHHHHhhcc-ee--------eeeeecc--h--hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHh
Confidence 998544333333322 11 1111111 1 244555555554332111122446777778776655555443
Q ss_pred ccccchhhhhhhc
Q 048744 177 DPKRGLLKQIVRQ 189 (312)
Q Consensus 177 ~~~~~~l~~ll~~ 189 (312)
. ++.+|+|-
T Consensus 411 p----fl~~Llp~ 419 (569)
T KOG1242|consen 411 P----FLPSLLPG 419 (569)
T ss_pred h----hHHHHhhH
Confidence 2 45555553
No 112
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=51.05 E-value=20 Score=25.14 Aligned_cols=37 Identities=24% Similarity=0.481 Sum_probs=26.2
Q ss_pred hhhccCcHHhhhhh-ccCCCCCCChHHHHHHHHHHHHHhc
Q 048744 243 EDTSKIPLELASAL-RIEREPVDDPEIRIQALESIYLITL 281 (312)
Q Consensus 243 ee~~~lp~~Lq~~l-~~~re~e~d~~Ir~~llE~Ll~L~~ 281 (312)
+++...|.+|-..+ .....- +|++|.+++.||.+|-.
T Consensus 11 ~~~~~Fp~~L~~lL~~~~~~L--~p~lR~~lv~aLiLLRn 48 (52)
T PF08158_consen 11 KETKDFPQELIDLLRNHHTVL--DPDLRMKLVKALILLRN 48 (52)
T ss_pred HHHHHHHHHHHHHHHhccccC--CHHHHHHHHHHHHHHHc
Confidence 36666777775323 333444 99999999999999854
No 113
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=49.83 E-value=14 Score=30.53 Aligned_cols=64 Identities=22% Similarity=0.232 Sum_probs=44.1
Q ss_pred hHHHHHhccC-CCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHH
Q 048744 4 ELEELLGFLC-SPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEAL 69 (312)
Q Consensus 4 ~l~ELv~FL~-~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~L 69 (312)
-+.-|+++|. +.++.+-..|+.=|--+-.. +.||..+-+- ++-..+..|+... +.++..|+.|+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~l--g~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKL--GAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHH--SHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhc--ChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3678999996 56888888888766554433 7787776332 4566777777776 78888888775
No 114
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=49.62 E-value=2.5e+02 Score=27.15 Aligned_cols=173 Identities=14% Similarity=0.163 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHhc-CCCccchhhhhhcccchHHHHHHhh-ccC-ccchhhHHHHHHhcCCChhHHHHhhhhhHHHHHH
Q 048744 16 SPSVKKAAVDIVRGL-TGSEDGLQSLSKYSKIALPSLARLL-SEN-KEVSEPATEALVNLSQNSELAGKMVQMGMIKTAM 92 (312)
Q Consensus 16 ~~~vR~~Al~~llgl-s~~~~~~~~i~~~~~~~i~~L~~L~-~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~lv 92 (312)
-.|+=+.+.+.+..+ +.....++.....-...+..++..+ |++ .....+++. .++.++...+.+..++
T Consensus 12 P~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~---------qLa~Ei~~~dll~~Li 82 (335)
T PF08569_consen 12 PAELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVA---------QLAQEIYRSDLLYLLI 82 (335)
T ss_dssp HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHH---------HHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHH---------HHHHHHHHhCHHHHHH
Confidence 347777788888888 3333333322211112344454443 554 333333322 3355566678888899
Q ss_pred HHHcCCCChhHHHHHHHHHhhcCCccchHH--HhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCChh
Q 048744 93 DLLYKPDSSITRLLVMLLVNLTQLDYGISS--LLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEA 170 (312)
Q Consensus 93 ~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~--ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~ 170 (312)
..+..-+-.....++.+.+|+-|...+-.. ..+.... ..+.+++.+++|..+ . +..-+.|.++..+.+.+.
T Consensus 83 ~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-----~~peil~~L~~gy~~-~-dial~~g~mlRec~k~e~ 155 (335)
T PF08569_consen 83 RNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-----HRPEILDILLRGYEN-P-DIALNCGDMLRECIKHES 155 (335)
T ss_dssp HTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT-------THHHHHHHHGGGS-T-TTHHHHHHHHHHHTTSHH
T ss_pred HHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-----CCHHHHHHHHHHhcC-c-cccchHHHHHHHHHhhHH
Confidence 988888888888999999999998755421 1222211 124677777777432 2 345667899999999999
Q ss_pred hhhhhcccccchhhhhhhcccCCchhhHhhHHHHHH
Q 048744 171 GRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIR 206 (312)
Q Consensus 171 gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ik 206 (312)
-=++++... .+.++.-..+.++=----.+..|+|
T Consensus 156 l~~~iL~~~--~f~~ff~~~~~~~Fdiasdaf~t~~ 189 (335)
T PF08569_consen 156 LAKIILYSE--CFWKFFKYVQLPNFDIASDAFSTFK 189 (335)
T ss_dssp HHHHHHTSG--GGGGHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHhCcH--HHHHHHHHhcCCccHhHHHHHHHHH
Confidence 777888754 2333333333333333333444444
No 115
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=48.62 E-value=1e+02 Score=28.61 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=35.6
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCC
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQ 74 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~ 74 (312)
-+++|+-||+...++-| -+...+|-. .|.++ .+||- +....++..++-.++..|||||.
T Consensus 14 ~LkdL~r~lr~dd~~~~--~v~r~lg~~-------~iv~~--DLiPi-L~~~~~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 14 CLKDLKRFLRRDDEDQR--DVRRQLGEW-------NIVQK--DLIPI-LISYKDDDKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHHhCcchH--HHHHHHHHh-------chhhh--hHHHH-HHhccCchHHHHHHHHHHHHhCC
Confidence 37889999994433333 122222221 14443 46663 33445567788899999999997
No 116
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=47.63 E-value=35 Score=36.60 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=52.7
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN 75 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d 75 (312)
++.+.+.++|+++.||+.|+-.|..+=.-+ +..... . +.+..++.++.|. +.+...|+.+|.++-..
T Consensus 129 ~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~-~-g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 129 IDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHE-L-GLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHhcC--Hhhhhc-c-cHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 567888999999999999999998874222 222222 1 5788889999888 89999999999998765
No 117
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=47.27 E-value=32 Score=36.71 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=76.2
Q ss_pred hHHHHHhccC-CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHH
Q 048744 4 ELEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGK 81 (312)
Q Consensus 4 ~l~ELv~FL~-~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~ 81 (312)
.++=||--+. +|+|.+|..|+-.+-.++..-.+ . .+..-.-|.+-++|. ..+.+.++..+-+|-- +.
T Consensus 934 hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~---~---~de~t~yLyrrL~De~~~V~rtclmti~fLil----ag- 1002 (1128)
T COG5098 934 HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT---T---ADEHTHYLYRRLGDEDADVRRTCLMTIHFLIL----AG- 1002 (1128)
T ss_pred HHHHHHHHHhhCCCcceeccceeeccccceehhh---h---hHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH----cc-
Confidence 4666777787 89999999988777666655332 1 113345778888888 8899999988888741 11
Q ss_pred hhh-hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchH
Q 048744 82 MVQ-MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGIS 121 (312)
Q Consensus 82 l~~-~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~ 121 (312)
.++ +|.+..+...+.|++....|.|-|++.-+++.+..+.
T Consensus 1003 q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~y 1043 (1128)
T COG5098 1003 QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTMY 1043 (1128)
T ss_pred ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccchh
Confidence 122 2667777888888888888888888888887775444
No 118
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=45.49 E-value=1.4e+02 Score=28.05 Aligned_cols=64 Identities=23% Similarity=0.269 Sum_probs=48.8
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCCh
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNS 76 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~ 76 (312)
..+..|+.++.++..+||..|...+....... ..+.+.+...+++. ..+...++.+|.+.....
T Consensus 180 ~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~ 244 (335)
T COG1413 180 EAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLALGEIGDEE 244 (335)
T ss_pred hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcch
Confidence 45778999999999999999999998876443 13456777777787 677788888888776554
No 119
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=44.78 E-value=60 Score=27.58 Aligned_cols=116 Identities=20% Similarity=0.229 Sum_probs=73.6
Q ss_pred chHHHHHhccCC--CCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC-CChhH
Q 048744 3 NELEELLGFLCS--PSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS-QNSEL 78 (312)
Q Consensus 3 ~~l~ELv~FL~~--~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS-~d~~~ 78 (312)
++++-++.+|.. ..+++|.+|+-.+..+- +..++. ++. .+-+-+..++.+. ...-..|+.+|.-|= ..+++
T Consensus 3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~-~~~--~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv 77 (157)
T PF11701_consen 3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREE-FKE--KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDV 77 (157)
T ss_dssp CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHH-HHH--HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHH-HHH--HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHH
Confidence 456677788875 57899999999888773 222221 221 2222333334444 445666777777775 45788
Q ss_pred HHHhhh-hhHHHHHHHHHc--CCCChhHHHHHHHHHhhcCCccchHHHh
Q 048744 79 AGKMVQ-MGMIKTAMDLLY--KPDSSITRLLVMLLVNLTQLDYGISSLL 124 (312)
Q Consensus 79 ~~~l~~-~~~i~~lv~~i~--~~~~~~ad~a~mLLsNLT~~~~~~~~ll 124 (312)
+..|.- .|+++.++..+. ..+.....-++.+|+ .+-.++.|...+
T Consensus 78 ~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~-aAc~d~~~r~~I 125 (157)
T PF11701_consen 78 GSELFLSEGFLESLLPLASRKSKDRKVQKAALELLS-AACIDKSCRTFI 125 (157)
T ss_dssp HHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHH-HHTTSHHHHHCC
T ss_pred HHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHH-HHHccHHHHHHH
Confidence 888774 599999999988 445556666777776 566665666543
No 120
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.97 E-value=62 Score=34.30 Aligned_cols=109 Identities=22% Similarity=0.214 Sum_probs=68.0
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhh------
Q 048744 12 LCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQ------ 84 (312)
Q Consensus 12 L~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~------ 84 (312)
|.+.--+||..|+..+..|+.+.++ |.. .++.-|+..+.|. ..+.-+|+.+|--+|..-.+.+..++
T Consensus 382 lEDEf~EVR~AAV~Sl~~La~ssP~----FA~--~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L 455 (823)
T KOG2259|consen 382 LEDEFYEVRRAAVASLCSLATSSPG----FAV--RALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESL 455 (823)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCC----cHH--HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHH
Confidence 3344569999999999999988766 332 4678888999998 77888888888777654333333221
Q ss_pred --h--hHHHHHHHHHcC---CCChhHHH-HHHHHHhhcCCccchHHHhhh
Q 048744 85 --M--GMIKTAMDLLYK---PDSSITRL-LVMLLVNLTQLDYGISSLLQV 126 (312)
Q Consensus 85 --~--~~i~~lv~~i~~---~~~~~ad~-a~mLLsNLT~~~~~~~~ll~~ 126 (312)
. ++=+-+-+++.. ++-...+. ...+|.||++.++-...++..
T Consensus 456 ~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~c 505 (823)
T KOG2259|consen 456 EDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRC 505 (823)
T ss_pred HhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHH
Confidence 1 111112222222 33334443 347899999997766655443
No 121
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.46 E-value=1.2e+02 Score=33.96 Aligned_cols=112 Identities=19% Similarity=0.263 Sum_probs=69.7
Q ss_pred HHHHHhcc----CCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC----
Q 048744 5 LEELLGFL----CSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN---- 75 (312)
Q Consensus 5 l~ELv~FL----~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d---- 75 (312)
-+||++|| +++++..|..|+-++.++...-.+... .+-+.+.+-+...+.|. ..++-.|+++++-....
T Consensus 116 WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~--~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~ 193 (1075)
T KOG2171|consen 116 WPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ--PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENN 193 (1075)
T ss_pred hHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc--hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccc
Confidence 45677776 478999999999999999866443211 01112333334445666 55777788877766533
Q ss_pred hhHHHHhhhh--hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCcc
Q 048744 76 SELAGKMVQM--GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDY 118 (312)
Q Consensus 76 ~~~~~~l~~~--~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~ 118 (312)
.......... +.+..+-+.+.+.+...++.+.+.|.-++-++.
T Consensus 194 ~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~p 238 (1075)
T KOG2171|consen 194 KSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEP 238 (1075)
T ss_pred hHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhch
Confidence 3333333322 445555556677777778888888877766553
No 122
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.57 E-value=1.2e+02 Score=33.01 Aligned_cols=64 Identities=17% Similarity=0.312 Sum_probs=42.0
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhc-CCChhHHHHhh
Q 048744 12 LCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNL-SQNSELAGKMV 83 (312)
Q Consensus 12 L~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNL-S~d~~~~~~l~ 83 (312)
|+++|+.+|.-|+..+-+.-... |. +-++-+++.+..|. +-+++.|..|+.-| |.|++-..+|.
T Consensus 117 L~DpN~LiRasALRvlSsIRvp~-----Ia---PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~ 182 (968)
T KOG1060|consen 117 LKDPNQLIRASALRVLSSIRVPM-----IA---PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE 182 (968)
T ss_pred hcCCcHHHHHHHHHHHHhcchhh-----HH---HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH
Confidence 56677777777777665542111 11 13445778888888 78889999998888 56666555554
No 123
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.44 E-value=59 Score=34.68 Aligned_cols=66 Identities=27% Similarity=0.277 Sum_probs=52.7
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ 74 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~ 74 (312)
..+|..-+++.+|-||+.|...+..+-.-+ .+ +.. ..+++..|+.++.|. +.+.-+|+.+|-++..
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~--~~-~~~-~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDID--PD-LVE-DSGLVDALKDLLSDSNPMVVANALAALSEIHE 189 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhcCC--hh-hcc-ccchhHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567889999999999999999998875332 22 222 237899999999988 8899999999988864
No 124
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=41.14 E-value=1.1e+02 Score=22.81 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=51.5
Q ss_pred hhhHHHHHHhcCCChhHHHHhhhhhHHHHHHHHHcC-CCChhHHHHHHHHHhhcCCccchHHHhh
Q 048744 62 SEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYK-PDSSITRLLVMLLVNLTQLDYGISSLLQ 125 (312)
Q Consensus 62 ~~~Al~~LiNLS~d~~~~~~l~~~~~i~~lv~~i~~-~~~~~ad~a~mLLsNLT~~~~~~~~ll~ 125 (312)
.|.|+=|+=|+...+.....|-+.++|+.+++...+ |.....--|.-.|.=++++.+|++.+-+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~ 68 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE 68 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 477888999998888877777767999999998875 5556777888889989999999876544
No 125
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.93 E-value=67 Score=33.42 Aligned_cols=72 Identities=21% Similarity=0.206 Sum_probs=59.6
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhH
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSEL 78 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~ 78 (312)
++-|-.+|++.+.+.|-.+++.+.-+-....|. ++.+.+.+...|+.-++|. ..+...++..|-+++.++.-
T Consensus 338 i~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~q--l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 338 IEVLTKYLSDDREETRIAVLNWIILLYHKAPGQ--LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHhhCcch--hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 566888999999999999999998887777774 4555556788888888888 78899999999999987644
No 126
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=40.23 E-value=1.1e+02 Score=34.47 Aligned_cols=82 Identities=15% Similarity=0.183 Sum_probs=62.4
Q ss_pred CccchhhHHHHHHhcCCChhHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHH
Q 048744 58 NKEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVM 137 (312)
Q Consensus 58 ~~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~ 137 (312)
.+.+.+-|+..+.-++++..+.+.+++.+.+..|+.++- ..+.....+.-.|--||.+.+-+..-+..+ .+.
T Consensus 1785 ~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLH-S~PS~R~~vL~vLYAL~S~~~i~keA~~hg-------~l~ 1856 (2235)
T KOG1789|consen 1785 HPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLH-SQPSMRARVLDVLYALSSNGQIGKEALEHG-------GLM 1856 (2235)
T ss_pred CchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHh-cChHHHHHHHHHHHHHhcCcHHHHHHHhcC-------chh
Confidence 367889999999999999999999999997777887775 466677889999999998887554333221 356
Q ss_pred HHHHHHhcCC
Q 048744 138 KLVRSFCRSS 147 (312)
Q Consensus 138 ~Ll~~f~~~~ 147 (312)
.+.++||...
T Consensus 1857 yil~~~c~~~ 1866 (2235)
T KOG1789|consen 1857 YILSILCLTN 1866 (2235)
T ss_pred hhhHHHhccC
Confidence 6777777654
No 127
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=39.68 E-value=1.9e+02 Score=28.51 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC---ccchhhHHHHHHhcCCCh----hHHHHhhhh--
Q 048744 15 PSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN---KEVSEPATEALVNLSQNS----ELAGKMVQM-- 85 (312)
Q Consensus 15 ~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~---~~~~~~Al~~LiNLS~d~----~~~~~l~~~-- 85 (312)
..--|+..-++.+-.+..+..|++++.+. ++|..++..+... +..+--|+..-.-+-... .+-+.+++.
T Consensus 226 eDtLVianciElvteLaeteHgreflaQe--glIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali 303 (524)
T KOG4413|consen 226 EDTLVIANCIELVTELAETEHGREFLAQE--GLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI 303 (524)
T ss_pred cceeehhhHHHHHHHHHHHhhhhhhcchh--hHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH
Confidence 35567777888888888888899988764 7999999987543 333333555444443332 223445554
Q ss_pred hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhh
Q 048744 86 GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNI 165 (312)
Q Consensus 86 ~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~Nl 165 (312)
-+|+-.+++|...++.....|.-.|--|-.+-+|+.-++..+.+. +-.-++..|-+.. +++..--...|+|+
T Consensus 304 iaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppa----aehllarafdqna----hakqeaaihaLaaI 375 (524)
T KOG4413|consen 304 IAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPA----AEHLLARAFDQNA----HAKQEAAIHALAAI 375 (524)
T ss_pred HHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChH----HHHHHHHHhcccc----cchHHHHHHHHHHh
Confidence 567778888877677677777777777777777876555544221 1235566666553 33333334556666
Q ss_pred cC
Q 048744 166 SK 167 (312)
Q Consensus 166 S~ 167 (312)
+.
T Consensus 376 ag 377 (524)
T KOG4413|consen 376 AG 377 (524)
T ss_pred hc
Confidence 54
No 128
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.58 E-value=1.2e+02 Score=32.53 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=69.2
Q ss_pred hHHHHHHhhccC-ccchhhHHHHHHhcC-CChhHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCcc-chHHH
Q 048744 47 ALPSLARLLSEN-KEVSEPATEALVNLS-QNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDY-GISSL 123 (312)
Q Consensus 47 ~i~~L~~L~~d~-~~~~~~Al~~LiNLS-~d~~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~-~~~~l 123 (312)
+-++++.|++.. +-++|.|+.+|.-+. +.|+.. ..+.+++++.+.||++.....|.-+.|-|+|-.. +.
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny--- 216 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY--- 216 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc---
Confidence 446778888777 778888888887765 444322 2577889999999999999899999999977653 22
Q ss_pred hhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCC
Q 048744 124 LQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKK 168 (312)
Q Consensus 124 l~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~ 168 (312)
++. .+-+..+++.+..|= .+-.+-.+|++||.+
T Consensus 217 L~L---------AP~ffkllttSsNNW---mLIKiiKLF~aLtpl 249 (877)
T KOG1059|consen 217 LQL---------APLFYKLLVTSSNNW---VLIKLLKLFAALTPL 249 (877)
T ss_pred ccc---------cHHHHHHHhccCCCe---ehHHHHHHHhhcccc
Confidence 111 134555555554331 234466788888876
No 129
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=38.49 E-value=31 Score=22.79 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=18.6
Q ss_pred HHHHHhccCCCCHHHHHHHHHHH
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIV 27 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~l 27 (312)
..-+...|.++.+.||..|++.|
T Consensus 20 ~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 20 QSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHhcCCChHHHHHHHHHC
Confidence 44567779999999999999864
No 130
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=37.69 E-value=1e+02 Score=25.98 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=47.6
Q ss_pred chHHHHHHhhccC-ccchhhHHHHHHhcCCC--hhHHHHhhhhhHHHHHHHHHcCC-CChhHHHHHHHHHhhc
Q 048744 46 IALPSLARLLSEN-KEVSEPATEALVNLSQN--SELAGKMVQMGMIKTAMDLLYKP-DSSITRLLVMLLVNLT 114 (312)
Q Consensus 46 ~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d--~~~~~~l~~~~~i~~lv~~i~~~-~~~~ad~a~mLLsNLT 114 (312)
.++++|.+=+... +.++-.|++.|--+..+ ..++.++.+.+|+..++..+.++ .....+.+..++-+.+
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 4677776555555 77788888877777654 46788888889999999998873 3445555555555444
No 131
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.39 E-value=3.2e+02 Score=29.49 Aligned_cols=112 Identities=16% Similarity=0.149 Sum_probs=74.6
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCCccch-hhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhh
Q 048744 6 EELLGFLCSPSPSVKKAAVDIVRGLTGSEDGL-QSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMV 83 (312)
Q Consensus 6 ~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~-~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~ 83 (312)
.-|+.+..++.-.||...+++|.-+++..--+ +.+|. ++++.+..=+.|. +.++..|+.||--+-.|+.--
T Consensus 88 ~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn---~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de---- 160 (892)
T KOG2025|consen 88 YHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN---KLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE---- 160 (892)
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH---HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC----
Confidence 34666777888899999999998888732111 12342 4555554445555 999999999999887554210
Q ss_pred hhhHHHHHHHHHcC-CCChhHHHHHHHHHhhcCCccchHHHhhhh
Q 048744 84 QMGMIKTAMDLLYK-PDSSITRLLVMLLVNLTQLDYGISSLLQVE 127 (312)
Q Consensus 84 ~~~~i~~lv~~i~~-~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~ 127 (312)
+..+++.+++.|.+ |.+.. --..|+|++-+.+....++..-
T Consensus 161 e~~v~n~l~~liqnDpS~EV---RRaaLsnI~vdnsTlp~IveRa 202 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPSDEV---RRAALSNISVDNSTLPCIVERA 202 (892)
T ss_pred cccHHHHHHHHHhcCCcHHH---HHHHHHhhccCcccchhHHHHh
Confidence 11567888888875 33333 4456789988887777666654
No 132
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=36.17 E-value=41 Score=34.36 Aligned_cols=70 Identities=19% Similarity=0.139 Sum_probs=52.8
Q ss_pred cchHHHHHhccCCCCHHHHHHHHHHHHhcCC--CccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhc
Q 048744 2 ANELEELLGFLCSPSPSVKKAAVDIVRGLTG--SEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNL 72 (312)
Q Consensus 2 ~~~l~ELv~FL~~~~~~vR~~Al~~llgls~--~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNL 72 (312)
++-++.|+.+|.+.|.+.|-++.=+++.=.. +..|+-..|+.- ++|.+|+++.+.. ...++-|-.+|.=+
T Consensus 378 ~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseI-GAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 378 PDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEI-GAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHH-HHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 4568899999999999999999888865442 356776777654 7899999999876 55566666666544
No 133
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=36.03 E-value=2.2e+02 Score=22.61 Aligned_cols=65 Identities=28% Similarity=0.193 Sum_probs=43.3
Q ss_pred HHHHHhccC-CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhh-ccC-ccch-hhHHHHHHhcCCCh
Q 048744 5 LEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL-SEN-KEVS-EPATEALVNLSQNS 76 (312)
Q Consensus 5 l~ELv~FL~-~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~-~d~-~~~~-~~Al~~LiNLS~d~ 76 (312)
++-+...|. +..+|.|..|.-++..++....-. +.++.++...+ ... .... +.|+.||+-+.+..
T Consensus 8 LP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-------~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 8 LPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-------DEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-------HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 556667777 678999999999999887654321 23455554443 222 3333 89999999887543
No 134
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=35.36 E-value=55 Score=24.79 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=29.9
Q ss_pred CcchHHHHHhccC-CCCHHHHHHHHHHHHhcCCCccc
Q 048744 1 MANELEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDG 36 (312)
Q Consensus 1 m~~~l~ELv~FL~-~~~~~vR~~Al~~llgls~~~~~ 36 (312)
|---|++|+.|=- ..+.+||..|++++..+||+...
T Consensus 1 MCRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P 37 (88)
T COG5552 1 MCRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHP 37 (88)
T ss_pred CccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence 4456899999977 46889999999999999998543
No 135
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=35.11 E-value=1.1e+02 Score=24.41 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=0.0
Q ss_pred hHHHHHHh-hcCChhhhhhhcccccchhhhhhh--cccCCchhhHhhHHHHHHhhhccchhhhHHHhhh
Q 048744 157 HVGSILVN-ISKKEAGRKILLDPKRGLLKQIVR--QFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLI 222 (312)
Q Consensus 157 ~la~vl~N-lS~~~~gR~~~l~~~~~~l~~ll~--~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~ 222 (312)
.+-.+++| ....+.....+.+-+ .+..+|. .+...+|--|+-++-+|||.|-..... +.++..
T Consensus 5 ~lvrlianl~~~~~~~Qd~vr~~~--Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eN-Q~~I~~ 70 (102)
T PF09759_consen 5 DLVRLIANLCYKNKEVQDLVRELG--GIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPEN-QEFIAQ 70 (102)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcC--ChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHH-HHHHHh
No 136
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=34.87 E-value=59 Score=36.48 Aligned_cols=93 Identities=24% Similarity=0.270 Sum_probs=59.7
Q ss_pred hHHHHHhccC-CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHH
Q 048744 4 ELEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGK 81 (312)
Q Consensus 4 ~l~ELv~FL~-~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~ 81 (312)
+++=|+.-+. +|+|-||..++-.+..++-.-++. +. ..-+.|.+-++|. +.+++.|+..|-+|= .+.
T Consensus 961 ~l~llftimeksp~p~IRsN~VvalgDlav~fpnl---ie---~~T~~Ly~rL~D~~~~vRkta~lvlshLI-----Lnd 1029 (1251)
T KOG0414|consen 961 HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL---IE---PWTEHLYRRLRDESPSVRKTALLVLSHLI-----LND 1029 (1251)
T ss_pred HHHHHHHHHhcCCCceeeecchheccchhhhcccc---cc---hhhHHHHHHhcCccHHHHHHHHHHHHHHH-----Hhh
Confidence 3455666666 677777777777666666555442 11 2345677777777 777888888777764 333
Q ss_pred hhhh-hHHHHHHHHHcCCCChhHHHHH
Q 048744 82 MVQM-GMIKTAMDLLYKPDSSITRLLV 107 (312)
Q Consensus 82 l~~~-~~i~~lv~~i~~~~~~~ad~a~ 107 (312)
+++. |.+..+...|.||+...+|+|-
T Consensus 1030 miKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 1030 MIKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred hhHhcccHHHHHHHhcCCcHHHHHHHH
Confidence 4443 7777777777777777666665
No 137
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=34.74 E-value=1.7e+02 Score=27.78 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=58.5
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC---hhHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN---SELA 79 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d---~~~~ 79 (312)
.+.+.|.-|++.+...|..|++.+...-...---+.+..+...++..+.+.++.+ .....-|+.++-=|+-. ..-.
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 3667777778899999999999998876543333445443335788888888777 44455554443333211 1223
Q ss_pred HHhhhhhHHHHHHHHHcCCCC
Q 048744 80 GKMVQMGMIKTAMDLLYKPDS 100 (312)
Q Consensus 80 ~~l~~~~~i~~lv~~i~~~~~ 100 (312)
+.+.+ .+.+.|...+.+...
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~ 143 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSA 143 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCcc
Confidence 33332 345567777777643
No 138
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=33.14 E-value=1.4e+02 Score=29.88 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=45.2
Q ss_pred HHHHHHhcCCChhHHHHhhhhhHHHHHHHHH----------cCCCChhHHHHHHHHHhhcCCccchHHHhh
Q 048744 65 ATEALVNLSQNSELAGKMVQMGMIKTAMDLL----------YKPDSSITRLLVMLLVNLTQLDYGISSLLQ 125 (312)
Q Consensus 65 Al~~LiNLS~d~~~~~~l~~~~~i~~lv~~i----------~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~ 125 (312)
|+.+|==||-|+...+.|...+.+..++.+- ..+++..+..|..-|+|+--....+.+++.
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~ 71 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFV 71 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3556666788888888888887788877765 235567888999999999887765655443
No 139
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=32.82 E-value=2.2e+02 Score=24.83 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=69.2
Q ss_pred hHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhh-hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHh
Q 048744 47 ALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQM-GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLL 124 (312)
Q Consensus 47 ~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~-~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll 124 (312)
.++.++.++-.. ..++..|+..+-=.-... ++.. .+++.++-+..||++..++.|..++..+....++. +
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qG-----LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~---v 80 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQG-----LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL---V 80 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-----CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH---H
Confidence 577777777665 566666665442222211 2222 68999999999999999999999999995444322 2
Q ss_pred hhhhhhhhhhhHH-HHHHHHhcCCCC-CCCCchhhHHHHHHhhcCChhhhhhhcc
Q 048744 125 QVEDEQIQGLYVM-KLVRSFCRSSSE-ASDDPFEHVGSILVNISKKEAGRKILLD 177 (312)
Q Consensus 125 ~~~~e~~~~~~l~-~Ll~~f~~~~~~-~~~~~~~~la~vl~NlS~~~~gR~~~l~ 177 (312)
+..- .+|.... .+-......... .......+++.+...+...+.-|+-|+.
T Consensus 81 ~~~~--~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~ 133 (187)
T PF12830_consen 81 ESRY--SEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK 133 (187)
T ss_pred HHHH--HHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH
Confidence 2211 1221111 111211111111 1011456778888888877777777765
No 140
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=32.43 E-value=4.2e+02 Score=24.69 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=80.2
Q ss_pred HHHHH-hccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhcc-CccchhhHHHHHHhcCC--ChhHHH
Q 048744 5 LEELL-GFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSE-NKEVSEPATEALVNLSQ--NSELAG 80 (312)
Q Consensus 5 l~ELv-~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d-~~~~~~~Al~~LiNLS~--d~~~~~ 80 (312)
++.|| +-++++.++||..|+.-+=-++--+.. ++. ..++-+.+.+.. ...+..-|+.+++.+-- .....+
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a~---~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LAK---EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 44555 677888999999999876333222211 221 234444444433 47778888888888742 222222
Q ss_pred Hhhh-------hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCC
Q 048744 81 KMVQ-------MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDD 153 (312)
Q Consensus 81 ~l~~-------~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~ 153 (312)
.-.. ..++..+.+.+.+.++...-.++. |..+++-.+.-......+..|+-.+..+.......
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~E----------Gl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~ 171 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVE----------GLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQR 171 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHH----------HHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHH
Confidence 2221 245666666766654332222222 22222222211110113567776666665433223
Q ss_pred chhhHHHHHHhhcCChhhhhhhc
Q 048744 154 PFEHVGSILVNISKKEAGRKILL 176 (312)
Q Consensus 154 ~~~~la~vl~NlS~~~~gR~~~l 176 (312)
-.+.|+++|-..+.....++..+
T Consensus 172 LrQ~L~~Ffp~y~~s~~~~Q~~l 194 (298)
T PF12719_consen 172 LRQCLSVFFPVYASSSPENQERL 194 (298)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHH
Confidence 45677777777665555444443
No 141
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=32.30 E-value=2.1e+02 Score=29.42 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=64.6
Q ss_pred HHHHHHhhccC-ccchhhHHHHHHhcCC--ChhHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHh
Q 048744 48 LPSLARLLSEN-KEVSEPATEALVNLSQ--NSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLL 124 (312)
Q Consensus 48 i~~L~~L~~d~-~~~~~~Al~~LiNLS~--d~~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll 124 (312)
+.+++.-++.. +.+-+++..+|-|..- ...+...++++.+-++|+-.-.+.+....-.||...+-|..+++ ++...
T Consensus 266 lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~KE-~E~~V 344 (832)
T KOG3678|consen 266 LDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNKE-VEREV 344 (832)
T ss_pred cchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhh-hhHHH
Confidence 45555566666 8889999999999873 46888899998888888887766666555677777777777665 44333
Q ss_pred hhhhhhhhhhhHHHHHHHHhcCCC
Q 048744 125 QVEDEQIQGLYVMKLVRSFCRSSS 148 (312)
Q Consensus 125 ~~~~e~~~~~~l~~Ll~~f~~~~~ 148 (312)
.. + | -.+|++-|+..-+
T Consensus 345 rk----S-~--TlaLVEPlva~~D 361 (832)
T KOG3678|consen 345 RK----S-G--TLALVEPLVASLD 361 (832)
T ss_pred hh----c-c--chhhhhhhhhccC
Confidence 22 1 1 3567777766543
No 142
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=31.84 E-value=52 Score=28.21 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhcc
Q 048744 18 SVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSE 57 (312)
Q Consensus 18 ~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d 57 (312)
++|-.|+..|..++-++-|...|+.++ .+|+-|++.+++
T Consensus 109 ~lRl~aL~~L~~fa~s~~G~~~LA~h~-~Ai~RLv~~L~~ 147 (149)
T PF12331_consen 109 TLRLEALRTLTSFAFSPFGALQLASHP-TAIPRLVRALHD 147 (149)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHhCc-hhHHHHHHHHHc
Confidence 799999999999999999999998876 788888887765
No 143
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=31.49 E-value=2.1e+02 Score=30.28 Aligned_cols=101 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhc--CCChhHHHHh
Q 048744 6 EELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNL--SQNSELAGKM 82 (312)
Q Consensus 6 ~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNL--S~d~~~~~~l 82 (312)
+|+=+++++.|..+-..|+..|+- ||++++...+.+ .|+..+.=++|+ +.++-||+..|-++ +........|
T Consensus 343 ~evEsLIsd~Nr~IstyAITtLLK-TGt~e~idrLv~----~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL 417 (898)
T COG5240 343 KEVESLISDENRTISTYAITTLLK-TGTEETIDRLVN----LIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFL 417 (898)
T ss_pred hhHHHHhhcccccchHHHHHHHHH-cCchhhHHHHHH----HHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHH
Q ss_pred hh-------hhHHHHHHHHHcC---CCChhHHHHHHHHH
Q 048744 83 VQ-------MGMIKTAMDLLYK---PDSSITRLLVMLLV 111 (312)
Q Consensus 83 ~~-------~~~i~~lv~~i~~---~~~~~ad~a~mLLs 111 (312)
++ ..|=...++.|.+ -.+...+.|...||
T Consensus 418 ~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC 456 (898)
T COG5240 418 GSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLC 456 (898)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHH
No 144
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=30.49 E-value=8.3e+02 Score=27.53 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=19.2
Q ss_pred ChHHHHHHHHHHHHHhcCHhHHH
Q 048744 265 DPEIRIQALESIYLITLQEAGLR 287 (312)
Q Consensus 265 d~~Ir~~llE~Ll~L~~t~~gR~ 287 (312)
.-++|+...||+|-|--+-.+|-
T Consensus 1079 gLd~RKaaFEcmytLLdscld~~ 1101 (1233)
T KOG1824|consen 1079 GLDLRKAAFECMYTLLDSCLDRL 1101 (1233)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhc
Confidence 78999999999999877666654
No 145
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=30.11 E-value=2.1e+02 Score=22.96 Aligned_cols=79 Identities=24% Similarity=0.331 Sum_probs=48.2
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCCChhHHHHhhh
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMVQ 84 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~~~~l~~ 84 (312)
++=|+.=|.+++++|...|++.|--.....+..+.+.... |.|..+-.. ....|+-+-+.+..-..+-+
T Consensus 10 i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~~----p~l~~L~~~-------g~~Ll~~~lS~~~Gf~~L~~ 78 (115)
T PF14663_consen 10 IELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSLR----PSLDHLGDI-------GSPLLLRFLSTPSGFRYLNE 78 (115)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHcC----cHHHHHHHc-------CHHHHHHHHcchHHHHHhcc
Confidence 4557888889999999999999988877765555554322 233322211 12345554455555555555
Q ss_pred hhHHHHHHHH
Q 048744 85 MGMIKTAMDL 94 (312)
Q Consensus 85 ~~~i~~lv~~ 94 (312)
.|+|+.-++.
T Consensus 79 ~~~v~~El~~ 88 (115)
T PF14663_consen 79 IGYVEKELDK 88 (115)
T ss_pred hhHHHHHHHH
Confidence 5777766665
No 146
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=29.42 E-value=1.7e+02 Score=24.48 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=48.1
Q ss_pred chHHHHHHhhccC-ccchhhHHHHHHhcCCC--hhHHHHhhhhhHHHHHHHHHcC-CCChhHHHHHHHHHhhcCC
Q 048744 46 IALPSLARLLSEN-KEVSEPATEALVNLSQN--SELAGKMVQMGMIKTAMDLLYK-PDSSITRLLVMLLVNLTQL 116 (312)
Q Consensus 46 ~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d--~~~~~~l~~~~~i~~lv~~i~~-~~~~~ad~a~mLLsNLT~~ 116 (312)
.++++|.+=+..+ +.++..|+..|==+..+ ..++.++.+.+|+..++..+.+ +.....+.+..++-+.+..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 4677776666555 77777887666555544 5678888888999999888864 3334556666666665543
No 147
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=28.96 E-value=1.5e+02 Score=24.87 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=43.3
Q ss_pred chHHHHHHhhccC-ccchhhHHHHHHhcCCC--hhHHHHhhhhhHHHHHHHHHcC------CCChhHHHHHHHHHhhc
Q 048744 46 IALPSLARLLSEN-KEVSEPATEALVNLSQN--SELAGKMVQMGMIKTAMDLLYK------PDSSITRLLVMLLVNLT 114 (312)
Q Consensus 46 ~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d--~~~~~~l~~~~~i~~lv~~i~~------~~~~~ad~a~mLLsNLT 114 (312)
.++++|.+-+... +.++-.|++.|--+..+ ..++..+++.+|+..++..+.. +.....+.+..++-.-+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3566776666555 67777777766666543 4677788888888888888853 22344444444444433
No 148
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=28.92 E-value=91 Score=33.68 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=54.6
Q ss_pred hHHHHHHhhccC-ccchhhHHHHHHhcC-CChhHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHH
Q 048744 47 ALPSLARLLSEN-KEVSEPATEALVNLS-QNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSL 123 (312)
Q Consensus 47 ~i~~L~~L~~d~-~~~~~~Al~~LiNLS-~d~~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~l 123 (312)
+|..|..+..|. ..+...|++.+.+|- ..|+ .+ ...+..+|..+-+|++..|..|.-+|-+|.+.+.+...+
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPE-qE----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE-QE----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH-HH----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 566777777777 777888888877764 3333 11 245678999999999999999999999998888776544
No 149
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=28.60 E-value=1.7e+02 Score=27.39 Aligned_cols=77 Identities=19% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHhcc-CCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCCChhHHHHhh
Q 048744 5 LEELLGFL-CSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMV 83 (312)
Q Consensus 5 l~ELv~FL-~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~~~~l~ 83 (312)
++.|+.|| ....+.|+..+++.|+..-.........|...+| +..++.++++... ..=+
T Consensus 135 m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~G-l~~v~~llk~~~~-------------------~~~~ 194 (257)
T PF08045_consen 135 MELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNG-LSTVCSLLKSKST-------------------DREL 194 (257)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCC-HHHHHHHHccccc-------------------cHHH
Q ss_pred hhhHHHHHHHHHcCCCCh
Q 048744 84 QMGMIKTAMDLLYKPDSS 101 (312)
Q Consensus 84 ~~~~i~~lv~~i~~~~~~ 101 (312)
+.+++++|+-|+.+..+.
T Consensus 195 r~K~~EFL~fyl~~E~~~ 212 (257)
T PF08045_consen 195 RLKCIEFLYFYLMPETPS 212 (257)
T ss_pred hHHHHHHHHHHHcccCCC
No 150
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=27.93 E-value=2.8e+02 Score=21.47 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=48.5
Q ss_pred HHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhh-hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhh
Q 048744 49 PSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQM-GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQV 126 (312)
Q Consensus 49 ~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~-~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~ 126 (312)
+.....+.|. ++++-+|+..|-+|-.... ...... ..+..+++.+.|+++=.==.|...|+-|+....
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-------- 75 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-------- 75 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh--------
Confidence 3344445666 8889999999988865444 222222 566677788888776432234444444443322
Q ss_pred hhhhhhhhhHHHHHHHHhcC
Q 048744 127 EDEQIQGLYVMKLVRSFCRS 146 (312)
Q Consensus 127 ~~e~~~~~~l~~Ll~~f~~~ 146 (312)
...++.|++.|...
T Consensus 76 ------~~vl~~L~~~y~~~ 89 (92)
T PF10363_consen 76 ------DEVLPILLDEYADP 89 (92)
T ss_pred ------HHHHHHHHHHHhCc
Confidence 11366777777665
No 151
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=27.77 E-value=2.5e+02 Score=27.55 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=67.9
Q ss_pred chHHHHHHhhccC----ccchhhHHHHHHhcC-CChhHHHHhhhhhHHHHHHHHHc-CCCChhHHHHHH---HHHhhcCC
Q 048744 46 IALPSLARLLSEN----KEVSEPATEALVNLS-QNSELAGKMVQMGMIKTAMDLLY-KPDSSITRLLVM---LLVNLTQL 116 (312)
Q Consensus 46 ~~i~~L~~L~~d~----~~~~~~Al~~LiNLS-~d~~~~~~l~~~~~i~~lv~~i~-~~~~~~ad~a~m---LLsNLT~~ 116 (312)
.++..|+..+... +.+-..|+..+.++= .+|..-..|-+.|.+..+++.+. ..-.+..|..+. .++=|+-+
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN 185 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN 185 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC
Confidence 4666777776553 456677777777765 57888888888899999999998 655666665543 45556677
Q ss_pred ccchHHHhhhhhhhhhhhhHHHHHHHHhcCCC
Q 048744 117 DYGISSLLQVEDEQIQGLYVMKLVRSFCRSSS 148 (312)
Q Consensus 117 ~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~ 148 (312)
..|.+++.... .+..+++.|.+..+
T Consensus 186 ~~Gl~~~~~~~-------~l~~~f~if~s~~~ 210 (379)
T PF06025_consen 186 NRGLEKVKSSN-------PLDKLFEIFTSPDY 210 (379)
T ss_pred HHHHHHHHhcC-------hHHHHHHHhCCHHH
Confidence 77776655421 47899999987754
No 152
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=27.03 E-value=98 Score=34.18 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=31.4
Q ss_pred hHHHHHHhhccC------ccchhhHHHHHHhcCCChhHHHHhhhhh
Q 048744 47 ALPSLARLLSEN------KEVSEPATEALVNLSQNSELAGKMVQMG 86 (312)
Q Consensus 47 ~i~~L~~L~~d~------~~~~~~Al~~LiNLS~d~~~~~~l~~~~ 86 (312)
-|+.|+.|+.=. -.+.+-|..+|+-|+.++.++..|.+..
T Consensus 740 GIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLp 785 (1516)
T KOG1832|consen 740 GIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLP 785 (1516)
T ss_pred cHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCc
Confidence 378888886432 2467889999999999999999988753
No 153
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=26.16 E-value=1.2e+02 Score=28.24 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=34.9
Q ss_pred chHHHHHHhhccCccchhhHHHHHHhcCCChhHHHHhhhhhHHH-HHHHHHcC--CCChhHHHHHHHHHhhcC
Q 048744 46 IALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMVQMGMIK-TAMDLLYK--PDSSITRLLVMLLVNLTQ 115 (312)
Q Consensus 46 ~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~-~lv~~i~~--~~~~~ad~a~mLLsNLT~ 115 (312)
+.+++|++.++.+... ...++..+++.++|+ -|+-.+.+ .++..++.++.||.|||-
T Consensus 13 ~~LkdL~r~lr~dd~~-------------~~~v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDED-------------QRDVRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHHHhCcc-------------hHHHHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCC
Confidence 3677788877555221 114455555544443 23333332 367899999999999996
No 154
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=25.46 E-value=1.7e+02 Score=30.58 Aligned_cols=167 Identities=13% Similarity=0.073 Sum_probs=96.0
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhc---CCChhHHH
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNL---SQNSELAG 80 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNL---S~d~~~~~ 80 (312)
.+-|++.|+.|..-|.-.++..++.+-..-++...-|=. .++|.-|+.++... .+..++.+=.|-.+ ++..+=.+
T Consensus 433 ~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~-~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~ 511 (743)
T COG5369 433 VELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLE-KSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFK 511 (743)
T ss_pred HHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHH-hhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhh
Confidence 455788888876666667777777766554443332222 26888888887633 33333333333333 22222223
Q ss_pred HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccc----hHHHhhhhhhhhhhhhHHHHHHHHhcCCC-CCCCCch
Q 048744 81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYG----ISSLLQVEDEQIQGLYVMKLVRSFCRSSS-EASDDPF 155 (312)
Q Consensus 81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~----~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~-~~~~~~~ 155 (312)
.|. .--++.+++++.||....-..+..+|-|+|-..+- ..-++.+. + ...|.+.|.+-.. +++-...
T Consensus 512 ~La-kig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~---p----~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 512 FLA-KIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKAT---P----RRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred hHH-hcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecC---h----HHHHHHHHHHHHHhcCchhhh
Confidence 333 33478899999999999999999999999984431 11111111 1 1134444443221 1221222
Q ss_pred hhHHHHHHhhcCChhhhhhhcccccc
Q 048744 156 EHVGSILVNISKKEAGRKILLDPKRG 181 (312)
Q Consensus 156 ~~la~vl~NlS~~~~gR~~~l~~~~~ 181 (312)
.-+ |++.|+..+.+.-++++..+..
T Consensus 584 ~~~-yilv~~aa~d~~l~~~V~~q~~ 608 (743)
T COG5369 584 EGC-YILVRNAACDDTLDYIVQSQED 608 (743)
T ss_pred hhH-HHHHHHHhccchHHHHHHhHHH
Confidence 334 8888888888888887776653
No 155
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=25.30 E-value=3.4e+02 Score=25.89 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCC--ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHH-hcCCChhH----HHHhhhhhHH
Q 048744 17 PSVKKAAVDIVRGLTGS--EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALV-NLSQNSEL----AGKMVQMGMI 88 (312)
Q Consensus 17 ~~vR~~Al~~llgls~~--~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~Li-NLS~d~~~----~~~l~~~~~i 88 (312)
+++|..++..++.+-.. ..-+..|..+. ..+..+.+-+..+ ..+....+.+|- ++-.++.+ +-.+....++
T Consensus 128 ~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~-~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L 206 (330)
T PF11707_consen 128 PSIRTNFIRFWLSFLSSGDPELKRDLLSQK-KLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTL 206 (330)
T ss_pred cCHHHHHHHHHHHHHccCCHHHHHHHHHcC-chHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHH
Confidence 39999999999988765 44455555544 4577777777656 788899998888 46666544 3334445677
Q ss_pred HHHHHHHcCCCC----hhHHHHHHHHHhhcCCcc
Q 048744 89 KTAMDLLYKPDS----SITRLLVMLLVNLTQLDY 118 (312)
Q Consensus 89 ~~lv~~i~~~~~----~~ad~a~mLLsNLT~~~~ 118 (312)
..++..-...++ ..++.+-.+|-.++..+.
T Consensus 207 ~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 207 SQLASLYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred HHHHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 777776555555 788889888888876663
No 156
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=25.28 E-value=2.6e+02 Score=22.93 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=44.8
Q ss_pred chHHHHHHhhccC-ccchhhHHHHHHhcCCC--hhHHHHhhhhhHHHHHHHHHcCCCC-h-hHHHHHHHHHhhc
Q 048744 46 IALPSLARLLSEN-KEVSEPATEALVNLSQN--SELAGKMVQMGMIKTAMDLLYKPDS-S-ITRLLVMLLVNLT 114 (312)
Q Consensus 46 ~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d--~~~~~~l~~~~~i~~lv~~i~~~~~-~-~ad~a~mLLsNLT 114 (312)
.++++|.+=+... +.++..|++.|==+..+ ..++.++.+.+|+..++..+.++.. + ..+.+..++.+.+
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 3566665555555 77777777766666544 5677888888899988888876443 2 4555555555444
No 157
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=25.12 E-value=2.4e+02 Score=22.88 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCCChhHHHHhhhhhHHHHHHHHHcC
Q 048744 18 SVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMDLLYK 97 (312)
Q Consensus 18 ~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~lv~~i~~ 97 (312)
.+|+.++..=--++.+.+-|......+..++.+ ...-..++..|-.||..|++-..+++.|++..++..+..
T Consensus 27 ~lkklvl~fek~i~kN~e~R~K~~ddP~KFmdS--------E~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~H 98 (108)
T PF08216_consen 27 WLKKLVLSFEKRINKNQEMRIKYPDDPEKFMDS--------EVDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSH 98 (108)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhCCCCHHHHHHh--------HHHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCC
Confidence 466666666556655555553322211123221 122356788999999999999999999999999999987
Q ss_pred CCCh
Q 048744 98 PDSS 101 (312)
Q Consensus 98 ~~~~ 101 (312)
++..
T Consensus 99 eN~D 102 (108)
T PF08216_consen 99 ENTD 102 (108)
T ss_pred CCcc
Confidence 6654
No 158
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.11 E-value=1.9e+02 Score=31.22 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=54.4
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhc-c-CccchhhHHHHHHhcCCChhHHHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLS-E-NKEVSEPATEALVNLSQNSELAGK 81 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~-d-~~~~~~~Al~~LiNLS~d~~~~~~ 81 (312)
.+..|-+||++.-+.+|-.|++..+-+..+....+.+-++. ..+..+++ + +..+++-|+..|--.|+.+. ++.
T Consensus 330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~----d~Ii~sLkterDvSirrravDLLY~mcD~~N-ak~ 404 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQ----DTIINSLKTERDVSIRRRAVDLLYAMCDVSN-AKQ 404 (938)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHH----HHHHHHhccccchHHHHHHHHHHHHHhchhh-HHH
Confidence 46678899999999999999999999988877666665443 34455554 3 36788889999888886543 344
Q ss_pred hh
Q 048744 82 MV 83 (312)
Q Consensus 82 l~ 83 (312)
|+
T Consensus 405 IV 406 (938)
T KOG1077|consen 405 IV 406 (938)
T ss_pred HH
Confidence 43
No 159
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.96 E-value=92 Score=33.11 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=42.8
Q ss_pred HHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhc
Q 048744 8 LLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNL 72 (312)
Q Consensus 8 Lv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNL 72 (312)
|+-+.++..+.||.+|++.++.|+. | +|-...+-...+.+++|. ..+.+.|+..++=.
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e---g----~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~ 261 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE---G----FKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVW 261 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc---c----ccccHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 6666678899999999999999974 4 222224566778888888 78888887666533
No 160
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=24.89 E-value=2.5e+02 Score=23.00 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=44.3
Q ss_pred chHHHHHHhhccC-ccchhhHHHHHHhcCCC--hhHHHHhhhhhHHHHHHHHHcCC---CChhHHHHHHHHHhhcC
Q 048744 46 IALPSLARLLSEN-KEVSEPATEALVNLSQN--SELAGKMVQMGMIKTAMDLLYKP---DSSITRLLVMLLVNLTQ 115 (312)
Q Consensus 46 ~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d--~~~~~~l~~~~~i~~lv~~i~~~---~~~~ad~a~mLLsNLT~ 115 (312)
.++++|.+-+..+ +.++..|+..|==+..+ ..++.++.+.+|+..++..+.++ .....+.+..++-+.+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4666776666555 77777777776666543 34677777778888888777653 23455555555555543
No 161
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=24.82 E-value=6.7e+02 Score=24.59 Aligned_cols=110 Identities=22% Similarity=0.266 Sum_probs=64.4
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCC-cc--------chhhhhhcc--cchHHHHHHhhccC-ccchhhHHHHHHhc
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGS-ED--------GLQSLSKYS--KIALPSLARLLSEN-KEVSEPATEALVNL 72 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~--------~~~~i~~~~--~~~i~~L~~L~~d~-~~~~~~Al~~LiNL 72 (312)
++.|++.|++ +++...|.+.+-.+-+. ++ +.+.++++. ..++|.|+.-.+.. ...+..-+.||.++
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~l 350 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHL 350 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHH
Confidence 5668888887 56777776666555544 22 111222210 02567777776665 44667778888888
Q ss_pred CCChhHHHHhhhh--hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744 73 SQNSELAGKMVQM--GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD 117 (312)
Q Consensus 73 S~d~~~~~~l~~~--~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~ 117 (312)
-..-. .+.+... ..++.+++.+.-++.....-+.-.|..+....
T Consensus 351 l~~vP-~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 351 LKNVP-KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HhhCC-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 65421 2223322 67888888887677655555555666555444
No 162
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=24.62 E-value=1.5e+02 Score=23.44 Aligned_cols=42 Identities=17% Similarity=0.296 Sum_probs=35.3
Q ss_pred hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhh
Q 048744 86 GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVE 127 (312)
Q Consensus 86 ~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~ 127 (312)
.++..|+.-...+..+..+.+.++|..|.+++.++..+-..+
T Consensus 30 ~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG 71 (98)
T PF14726_consen 30 LLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIG 71 (98)
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHcc
Confidence 677788888888899999999999999999998776655544
No 163
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.31 E-value=91 Score=35.01 Aligned_cols=64 Identities=25% Similarity=0.242 Sum_probs=45.8
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccCccchhhHHHHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSENKEVSEPATEAL 69 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~L 69 (312)
-++.+..||.+.+++|++.|+..+--+... ++- .+..+.+.+++.+.+++++...-.+-++.-|
T Consensus 828 li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~--~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 828 LISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE--CLSPHLEELLPSLLALSHDHKIKVRKKVRLL 892 (1176)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH--HHhhhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 367788999999999999999999777655 332 3444444689999999988744333344433
No 164
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=24.15 E-value=1.8e+02 Score=27.89 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC----ccchhhHHHHHHhcCCChhH----HHHhhh---hh
Q 048744 18 SVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN----KEVSEPATEALVNLSQNSEL----AGKMVQ---MG 86 (312)
Q Consensus 18 ~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~----~~~~~~Al~~LiNLS~d~~~----~~~l~~---~~ 86 (312)
++|-.|+.++.-....++....++..++.++..|+.+++-. ..+...|+.+|-=++.+..- ...++- .|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 67888999998888777777788877667899999997543 35666777777777665443 333332 26
Q ss_pred HHHHHHHHHc
Q 048744 87 MIKTAMDLLY 96 (312)
Q Consensus 87 ~i~~lv~~i~ 96 (312)
++..++..+.
T Consensus 317 iL~~llR~~v 326 (329)
T PF06012_consen 317 ILPQLLRKCV 326 (329)
T ss_pred cHHHHHHHHH
Confidence 6666666543
No 165
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=23.19 E-value=1.5e+02 Score=30.72 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=50.6
Q ss_pred hHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhh-hHHHHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744 47 ALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQM-GMIKTAMDLLYKPDSSITRLLVMLLVNLTQ 115 (312)
Q Consensus 47 ~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~-~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~ 115 (312)
..+.++.++... +....+|..|+-|++-+-+.+..+... ..-+.+|..|.-|.+..-.-+...++-+-.
T Consensus 329 ~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 329 MLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 456777777666 889999999999999887777766655 677788999888777544444444444443
No 166
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=23.03 E-value=1.4e+02 Score=27.11 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=79.2
Q ss_pred HHHHHHhcCCCCCCCCchhhHHHHHHhhcCChhhhhhhccccc-chhhhhhhcccCC---chhhHhhHHHHHHhhhccch
Q 048744 138 KLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKR-GLLKQIVRQFDSS---NYLRKKGVSGTIRNCCFEAE 213 (312)
Q Consensus 138 ~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~gR~~~l~~~~-~~l~~ll~~~~~~---s~iRR~gva~~ikNccF~~~ 213 (312)
.+...+..+.........--..-+|+|+-+.+.||.++++... .++..+....... +..-|-.++..+-|++--..
T Consensus 110 ~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~ 189 (268)
T PF08324_consen 110 LLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLH 189 (268)
T ss_dssp HHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHH
Confidence 4445555554332222334446899999999999999998865 4555554443332 67788999999999975322
Q ss_pred hhhHHHhhhccChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhHHH-HHHhC
Q 048744 214 HQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLR-AFWSV 292 (312)
Q Consensus 214 ~H~~~ll~~~~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~-~lr~~ 292 (312)
... . ++|..-.+-..+ ..--...+.|++..-.++-||=-|+....... ..+..
T Consensus 190 ~~~--~---------------------~~~~~~~ll~~i---~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l 243 (268)
T PF08324_consen 190 KNR--S---------------------DEEWQSELLSSI---IEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSL 243 (268)
T ss_dssp HCT--S----------------------CCHHHHHHHHH---HHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCC
T ss_pred hcC--C---------------------ChHHHHHHHHHH---HHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHc
Confidence 211 0 111110011111 11011112489999999999998887665555 33446
Q ss_pred Ccchhccc
Q 048744 293 NGPRLVHG 300 (312)
Q Consensus 293 ~vy~vlr~ 300 (312)
|+..++..
T Consensus 244 ~~~~~~~~ 251 (268)
T PF08324_consen 244 DVKSVLSK 251 (268)
T ss_dssp THHHHHHH
T ss_pred ChHHHHHH
Confidence 66666544
No 167
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=22.76 E-value=1.5e+02 Score=23.85 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=33.4
Q ss_pred hHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhh
Q 048744 47 ALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQM 85 (312)
Q Consensus 47 ~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~ 85 (312)
.|+.|++-+.|. +.++..|+.+|-+.+.++...+.++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 578888889888 889999999999999998777777654
No 168
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=22.55 E-value=4.7e+02 Score=25.39 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=85.0
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHH---HhcC-CC-ccchhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCCChh
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIV---RGLT-GS-EDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSE 77 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~l---lgls-~~-~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~ 77 (312)
+.+..||+-|..-.-+-|+-++.+. ++.. |+ ..-.+++..+. .++..|+.--.+.+.++-.+=..|+.....+.
T Consensus 79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~-e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~ 157 (342)
T KOG1566|consen 79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNP-EILDNLVKGYENTPEIALTCGNMLRECIRHEF 157 (342)
T ss_pred CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCH-HHHHHHHhhhccchHHHHHHHHHHHHHHhhHH
Confidence 4567788888887777777776654 3332 33 23344555654 56666666533346677777778999999999
Q ss_pred HHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhh-cCCccchHHHhhh
Q 048744 78 LAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNL-TQLDYGISSLLQV 126 (312)
Q Consensus 78 ~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNL-T~~~~~~~~ll~~ 126 (312)
+++.++........+.++..|.-..|-+|.....-+ |++..-+..++..
T Consensus 158 LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~ 207 (342)
T KOG1566|consen 158 LAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIR 207 (342)
T ss_pred HHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 999999888889999999988887777776666554 6666555555543
No 169
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.34 E-value=1.8e+02 Score=31.77 Aligned_cols=60 Identities=12% Similarity=0.294 Sum_probs=40.3
Q ss_pred CCCchhhHH----HHHHhhcCChhhhhhhccccc--chhhh-hhh----------------------ccc-CCchhhHhh
Q 048744 151 SDDPFEHVG----SILVNISKKEAGRKILLDPKR--GLLKQ-IVR----------------------QFD-SSNYLRKKG 200 (312)
Q Consensus 151 ~~~~~~~la----~vl~NlS~~~~gR~~~l~~~~--~~l~~-ll~----------------------~~~-~~s~iRR~g 200 (312)
+...|||+. .+|+++++.+.=-.+|-.++. .+.++ .+| -++ ++...|||+
T Consensus 302 ~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~ 381 (960)
T KOG1992|consen 302 PDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRA 381 (960)
T ss_pred CCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHH
Confidence 345699986 688999988887777766541 01100 111 022 567789999
Q ss_pred HHHHHHhhhc
Q 048744 201 VSGTIRNCCF 210 (312)
Q Consensus 201 va~~ikNccF 210 (312)
+...+|.+|=
T Consensus 382 a~dlvrgL~~ 391 (960)
T KOG1992|consen 382 AIDLVRGLCK 391 (960)
T ss_pred HHHHHHHHHH
Confidence 9999999994
No 170
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.67 E-value=7.1e+02 Score=27.24 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=21.3
Q ss_pred hcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccc
Q 048744 165 ISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEA 212 (312)
Q Consensus 165 lS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~ 212 (312)
+-..|.-|..+++. +-.-+|++. |..-.+|++.++---|-..
T Consensus 424 iek~p~Lr~~ii~~----l~~~~~~ir--S~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 424 IEKFPNLRASIIEK----LLETFPQIR--SSKICRGALWILGEYCEGL 465 (948)
T ss_pred HHhCchHHHHHHHH----HHHhhhhhc--ccccchhHHHHHHHHHhhh
Confidence 34455555554432 222233333 3444677777777777543
No 171
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=21.13 E-value=1.7e+02 Score=24.80 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=39.8
Q ss_pred cchhhHHHHHHhcCCChhHHHHhhhh-hHHHHHHHHHcCCCChhHHHHHHHHHhhc
Q 048744 60 EVSEPATEALVNLSQNSELAGKMVQM-GMIKTAMDLLYKPDSSITRLLVMLLVNLT 114 (312)
Q Consensus 60 ~~~~~Al~~LiNLS~d~~~~~~l~~~-~~i~~lv~~i~~~~~~~ad~a~mLLsNLT 114 (312)
.....++.||--+.......+.+++. ++|..+...+..++......++.+|+-++
T Consensus 131 ~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 131 DIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 34566777777777777777777775 88888888888777777778888887653
Done!