Query 048744
Match_columns 312
No_of_seqs 131 out of 274
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 22:10:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hxt_A De novo protein OR329; 99.7 8E-15 2.7E-19 129.1 19.8 239 3-285 2-245 (252)
2 1xm9_A Plakophilin 1; armadill 99.6 9.4E-14 3.2E-18 136.2 20.1 284 3-303 2-382 (457)
3 4db6_A Armadillo repeat protei 99.5 1.7E-13 5.8E-18 118.5 15.6 190 5-209 14-208 (210)
4 3tt9_A Plakophilin-2; cell adh 99.5 2.1E-14 7E-19 130.0 10.1 197 4-211 9-230 (233)
5 4db8_A Armadillo-repeat protei 99.5 1.5E-13 5.3E-18 121.9 15.5 234 4-281 13-251 (252)
6 3nmw_A APC variant protein; AR 99.5 5.3E-13 1.8E-17 127.5 18.7 242 4-283 74-336 (354)
7 2z6h_A Catenin beta-1, beta-ca 99.5 3.5E-13 1.2E-17 136.8 16.8 249 4-298 57-310 (644)
8 4hxt_A De novo protein OR329; 99.5 6.3E-13 2.1E-17 116.9 16.0 197 4-215 45-246 (252)
9 4db8_A Armadillo-repeat protei 99.5 6.8E-13 2.3E-17 117.7 15.6 192 4-210 55-251 (252)
10 3nmw_A APC variant protein; AR 99.5 5.8E-13 2E-17 127.2 15.3 197 4-215 128-339 (354)
11 1jdh_A Beta-catenin; beta-cate 99.5 6.3E-13 2.1E-17 129.7 15.8 248 4-297 60-312 (529)
12 3now_A UNC-45 protein, SD10334 99.4 3.8E-12 1.3E-16 133.2 19.9 258 4-303 496-760 (810)
13 3ul1_B Importin subunit alpha- 99.4 5.8E-12 2E-16 124.8 20.4 255 4-300 101-365 (510)
14 3l6x_A Catenin delta-1; cateni 99.4 2.3E-12 8E-17 130.5 17.0 274 4-300 49-362 (584)
15 3nmz_A APC variant protein; pr 99.4 9.7E-12 3.3E-16 122.7 17.7 242 4-283 190-452 (458)
16 1xm9_A Plakophilin 1; armadill 99.4 1.3E-11 4.3E-16 121.0 17.3 119 4-125 45-182 (457)
17 3nmz_A APC variant protein; pr 99.4 6.1E-12 2.1E-16 124.1 15.1 195 4-213 244-453 (458)
18 3l6x_A Catenin delta-1; cateni 99.4 1.9E-11 6.4E-16 123.9 18.5 260 4-302 91-405 (584)
19 3tpo_A Importin subunit alpha- 99.4 2.9E-11 9.7E-16 120.2 19.5 255 4-300 120-384 (529)
20 1wa5_B Importin alpha subunit; 99.3 4.9E-11 1.7E-15 117.7 19.8 251 4-298 131-388 (530)
21 3ul1_B Importin subunit alpha- 99.3 6.8E-11 2.3E-15 117.1 20.8 262 4-304 58-327 (510)
22 3now_A UNC-45 protein, SD10334 99.3 4.5E-11 1.5E-15 125.1 20.3 257 5-298 379-713 (810)
23 4b8j_A Importin subunit alpha- 99.3 4.1E-11 1.4E-15 118.0 17.9 253 4-299 118-377 (528)
24 4b8j_A Importin subunit alpha- 99.3 6.1E-11 2.1E-15 116.8 18.6 255 4-301 75-336 (528)
25 2z6g_A B-catenin; FULL-length, 99.3 2.8E-11 9.7E-16 126.2 15.9 248 3-296 192-444 (780)
26 3tpo_A Importin subunit alpha- 99.3 1.1E-10 3.8E-15 115.9 18.5 254 4-300 163-427 (529)
27 2jdq_A Importin alpha-1 subuni 99.3 2.8E-10 9.7E-15 108.4 20.5 251 3-298 64-323 (450)
28 2jdq_A Importin alpha-1 subuni 99.3 1.2E-10 4E-15 111.1 17.5 252 4-300 108-368 (450)
29 1jdh_A Beta-catenin; beta-cate 99.3 7.5E-11 2.6E-15 114.9 16.2 212 4-232 18-234 (529)
30 1wa5_B Importin alpha subunit; 99.2 8.3E-11 2.8E-15 116.1 14.6 253 4-300 174-435 (530)
31 2z6h_A Catenin beta-1, beta-ca 99.2 2.2E-10 7.5E-15 116.2 17.8 210 4-231 15-230 (644)
32 4db6_A Armadillo repeat protei 99.2 7.7E-10 2.6E-14 95.3 16.1 194 46-281 12-209 (210)
33 2z6g_A B-catenin; FULL-length, 99.1 6.2E-10 2.1E-14 116.0 16.8 214 4-234 151-369 (780)
34 1xqr_A HSPBP1 protein; armadil 99.1 8.3E-10 2.9E-14 102.9 12.0 194 3-211 28-239 (296)
35 3tt9_A Plakophilin-2; cell adh 98.9 1.2E-08 4.3E-13 91.9 12.5 205 46-282 8-230 (233)
36 1xqr_A HSPBP1 protein; armadil 98.8 6.4E-08 2.2E-12 90.1 15.9 159 4-175 82-247 (296)
37 3opb_A SWI5-dependent HO expre 98.7 1.7E-08 5.7E-13 104.8 8.8 205 4-215 499-734 (778)
38 3opb_A SWI5-dependent HO expre 98.7 1.6E-07 5.6E-12 97.4 15.6 192 4-209 458-682 (778)
39 4gmo_A Putative uncharacterize 98.2 2.4E-06 8.3E-11 87.7 7.6 197 3-210 34-258 (684)
40 3ltm_A Alpha-REP4; protein eng 97.7 0.00033 1.1E-08 59.9 10.9 103 2-127 18-121 (211)
41 3grl_A General vesicular trans 97.5 0.00012 4.2E-09 74.4 7.4 122 3-125 122-251 (651)
42 3ltj_A Alpharep-4; protein eng 97.3 0.017 5.7E-07 48.7 17.4 152 3-209 14-166 (201)
43 4fdd_A Transportin-1; heat rep 97.3 0.0052 1.8E-07 63.6 16.8 195 5-212 176-390 (852)
44 3grl_A General vesicular trans 97.3 0.0014 4.8E-08 66.7 11.5 197 4-211 61-293 (651)
45 3ltj_A Alpharep-4; protein eng 96.8 0.0077 2.6E-07 50.8 10.1 91 3-115 45-136 (201)
46 1oyz_A Hypothetical protein YI 96.7 0.18 6.2E-06 44.4 18.9 94 4-114 24-119 (280)
47 2vgl_B AP-2 complex subunit be 96.7 0.017 5.9E-07 57.7 13.2 174 7-209 90-267 (591)
48 1w63_A Adapter-related protein 96.6 0.0062 2.1E-07 61.4 9.2 99 6-117 110-210 (618)
49 1te4_A Conserved protein MTH18 96.5 0.0094 3.2E-07 47.4 8.0 89 4-115 13-102 (131)
50 3ltm_A Alpha-REP4; protein eng 96.5 0.011 3.7E-07 50.3 8.7 102 3-127 81-183 (211)
51 1b3u_A Protein (protein phosph 96.4 0.027 9.2E-07 54.6 12.4 67 5-73 283-352 (588)
52 4fdd_A Transportin-1; heat rep 96.3 0.038 1.3E-06 57.1 13.7 188 4-210 216-429 (852)
53 1ibr_B P95, importin beta-1 su 96.3 0.036 1.2E-06 52.0 12.3 241 5-283 174-439 (462)
54 2vgl_B AP-2 complex subunit be 96.2 0.12 4.1E-06 51.5 16.1 67 5-75 123-190 (591)
55 2vgl_A Adaptor protein complex 96.1 0.0063 2.1E-07 61.6 6.1 97 9-117 117-218 (621)
56 1oyz_A Hypothetical protein YI 95.7 0.061 2.1E-06 47.6 10.4 88 11-114 99-187 (280)
57 2qk2_A LP04448P; mini spindles 95.6 0.017 5.8E-07 50.5 6.0 183 7-210 19-205 (242)
58 3tjz_B Coatomer subunit gamma; 94.1 0.074 2.5E-06 50.4 6.4 98 7-117 108-207 (355)
59 1w63_A Adapter-related protein 94.0 0.22 7.5E-06 50.0 10.0 99 5-115 315-414 (618)
60 1b3u_A Protein (protein phosph 93.9 0.086 2.9E-06 51.0 6.6 102 8-115 169-271 (588)
61 1te4_A Conserved protein MTH18 93.7 0.018 6.3E-07 45.6 1.2 87 4-112 43-130 (131)
62 2bpt_A Importin beta-1 subunit 93.7 1.1 3.9E-05 45.3 14.7 192 8-211 184-399 (861)
63 2qk2_A LP04448P; mini spindles 93.1 0.19 6.5E-06 43.7 6.9 104 5-116 58-164 (242)
64 1qgr_A Protein (importin beta 92.5 1.6 5.5E-05 44.3 13.8 110 5-116 174-289 (876)
65 4gmo_A Putative uncharacterize 92.3 0.52 1.8E-05 48.0 9.8 161 46-215 35-219 (684)
66 1u6g_C TIP120 protein, CAND1; 92.2 0.71 2.4E-05 49.6 11.3 107 3-115 6-115 (1230)
67 1qgr_A Protein (importin beta 91.6 1.5 5.3E-05 44.4 12.4 183 4-210 2-203 (876)
68 1u6g_C TIP120 protein, CAND1; 91.4 5.4 0.00018 42.7 16.9 104 5-114 50-162 (1230)
69 3b2a_A TON_1937, putative unch 90.9 2.3 7.9E-05 38.2 11.1 65 4-69 34-99 (265)
70 2bpt_A Importin beta-1 subunit 89.8 0.57 1.9E-05 47.6 7.2 106 5-116 413-530 (861)
71 3dad_A FH1/FH2 domain-containi 89.3 1.1 3.7E-05 42.1 8.1 112 5-118 120-234 (339)
72 2db0_A 253AA long hypothetical 88.9 1.5 5.2E-05 38.2 8.1 75 1-81 142-218 (253)
73 1ibr_B P95, importin beta-1 su 88.5 4.1 0.00014 37.6 11.6 190 5-212 219-439 (462)
74 2qk1_A Protein STU2; STU2P, XM 87.6 0.5 1.7E-05 41.9 4.5 71 3-73 146-219 (249)
75 2qk1_A Protein STU2; STU2P, XM 85.6 1.5 5E-05 38.8 6.4 191 8-209 21-219 (249)
76 2vgl_A Adaptor protein complex 84.7 3 0.0001 41.9 8.9 94 4-107 330-425 (621)
77 3dad_A FH1/FH2 domain-containi 77.8 9.8 0.00033 35.6 9.1 107 5-112 162-282 (339)
78 1upk_A MO25 protein; transfera 76.4 18 0.00061 33.8 10.4 194 5-206 80-279 (341)
79 3b2a_A TON_1937, putative unch 72.8 15 0.00051 32.9 8.5 97 8-117 120-220 (265)
80 2iw3_A Elongation factor 3A; a 65.1 14 0.00049 39.3 7.9 109 3-118 175-283 (986)
81 3ebb_A Phospholipase A2-activa 62.5 36 0.0012 31.0 9.2 68 7-74 151-220 (304)
82 2iw3_A Elongation factor 3A; a 61.9 8.6 0.00029 41.0 5.5 108 4-118 134-243 (986)
83 3u0r_A Apoptosis inhibitor 5; 61.8 25 0.00084 34.6 8.2 64 5-75 31-95 (507)
84 3o2t_A Symplekin; heat repeat, 58.5 56 0.0019 30.9 10.0 64 3-72 63-127 (386)
85 2i9c_A Hypothetical protein RP 58.2 4.9 0.00017 32.2 2.2 28 3-30 57-84 (123)
86 4ffb_C Protein STU2; tubulin f 56.5 36 0.0012 29.7 7.9 103 8-110 14-127 (278)
87 2db0_A 253AA long hypothetical 56.4 1E+02 0.0035 26.9 16.4 201 42-287 28-252 (253)
88 4ffb_C Protein STU2; tubulin f 52.1 13 0.00045 32.6 4.3 23 6-28 142-164 (278)
89 3oc3_A Helicase MOT1, MOT1; re 50.3 1.3E+02 0.0046 30.5 11.4 166 11-209 235-403 (800)
90 3l9t_A Putative uncharacterize 48.2 16 0.00055 32.4 4.1 73 5-81 141-215 (240)
91 3gs3_A Symplekin, LD45768P; he 46.6 25 0.00087 31.3 5.2 160 4-192 54-223 (257)
92 3eg5_B Protein diaphanous homo 46.4 59 0.002 30.5 8.0 96 18-114 135-244 (383)
93 3tjz_B Coatomer subunit gamma; 44.6 45 0.0015 31.1 6.8 65 5-75 141-206 (355)
94 3vld_A DNA mismatch repair pro 43.4 1.3E+02 0.0044 29.5 9.9 82 5-93 118-203 (500)
95 1ho8_A Vacuolar ATP synthase s 39.9 2.7E+02 0.0093 27.0 11.7 198 5-212 79-303 (480)
96 1wa5_C Importin alpha RE-expor 37.4 3.5E+02 0.012 27.9 13.0 53 5-57 498-559 (960)
97 3ebb_A Phospholipase A2-activa 37.0 98 0.0034 28.0 7.7 120 156-303 166-286 (304)
98 4ady_A RPN2, 26S proteasome re 30.6 1.3E+02 0.0044 32.0 8.2 26 3-28 577-603 (963)
99 4ady_A RPN2, 26S proteasome re 30.4 1.4E+02 0.0047 31.8 8.4 60 47-115 578-641 (963)
100 2x1g_F Cadmus; transport prote 28.9 1E+02 0.0035 31.8 7.2 78 14-99 517-597 (971)
101 2f31_A Diaphanous protein homo 27.7 1.8E+02 0.0061 24.8 7.6 66 17-83 68-137 (233)
102 2f31_A Diaphanous protein homo 26.0 85 0.0029 27.0 5.1 68 61-128 70-141 (233)
103 3ldz_A STAM-1, signal transduc 25.9 61 0.0021 25.9 3.8 66 46-111 42-110 (140)
104 2bnx_A Diaphanous protein homo 25.0 2.5E+02 0.0087 26.0 8.6 95 17-112 72-180 (386)
105 3g2s_A C-terminal fragment of 23.8 1E+02 0.0035 24.9 4.9 69 46-114 48-125 (149)
106 1ho8_A Vacuolar ATP synthase s 23.6 2.1E+02 0.007 27.9 7.7 102 16-117 181-303 (480)
107 2kwv_A RAD30 homolog B, DNA po 20.3 87 0.003 20.5 2.9 25 237-261 13-39 (48)
108 1juq_A ADP-ribosylation factor 20.2 1.3E+02 0.0044 24.8 4.9 69 46-114 50-127 (171)
No 1
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.66 E-value=8e-15 Score=129.10 Aligned_cols=239 Identities=20% Similarity=0.245 Sum_probs=185.9
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCCc-cchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSE-DGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA 79 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~-~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~ 79 (312)
+.++.|+++|+++++++|..|+..|..++... +++..+.+. ++++.|+.++.+. ..+...|+.+|-|++.+ +..+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDA--GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC--CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 56899999999999999999999999998664 477776653 6899999999888 88999999999999987 8889
Q ss_pred HHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC-CccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhH
Q 048744 80 GKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ-LDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHV 158 (312)
Q Consensus 80 ~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~-~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~l 158 (312)
..+.+.|+++.++..+.++++.....++..|.||+. .+.....+.+.+ .+..|++++..++. .-....
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-------~i~~L~~~l~~~~~----~~~~~a 148 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG-------GVEVLVKLLTSTDS----EVQKEA 148 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-------HHHHHHHHTTCSCH----HHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC-------CHHHHHHHHcCCCH----HHHHHH
Confidence 999989999999999999988999999999999995 455554444421 37788888765532 234667
Q ss_pred HHHHHhhcCChhh-hhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCC
Q 048744 159 GSILVNISKKEAG-RKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGN 237 (312)
Q Consensus 159 a~vl~NlS~~~~g-R~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ 237 (312)
+.++.|++...+. ++.+.+. |.++.|+..+.+++..-|..++.+|.|+|.....+...+.. ...+|.++--
T Consensus 149 ~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--~~~i~~L~~l---- 220 (252)
T 4hxt_A 149 ARALANIASGPDEAIKAIVDA--GGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD--AGGVEVLQKL---- 220 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH--TTHHHHHHHG----
T ss_pred HHHHHHHHcCCHHHHHHHHHC--cCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHH----
Confidence 8999999985544 4677764 47888888878888888999999999999966655322222 2344433211
Q ss_pred CCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhH
Q 048744 238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAG 285 (312)
Q Consensus 238 ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~g 285 (312)
+. . +++++|...+.+|..|+....+
T Consensus 221 ------------------l~---~--~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 221 ------------------LT---S--TDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp ------------------GG---C--SCHHHHHHHHHHHHHHHHTCBC
T ss_pred ------------------HC---C--CcHHHHHHHHHHHHHHHcCCCc
Confidence 21 1 2789999999999999876544
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.58 E-value=9.4e-14 Score=136.15 Aligned_cols=284 Identities=15% Similarity=0.142 Sum_probs=200.5
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCCcc-chhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSED-GLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA 79 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~-~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~ 79 (312)
..++.||.+|+++++++|..|+..|..++...+ .+..+.+. +.|+.|+.+++.+ +.+...|+.+|-||+.+ +..+
T Consensus 2 ~~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~--g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k 79 (457)
T 1xm9_A 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL--GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHT--THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 358999999999999999999999999986654 45566654 6899999999887 78899999999999976 8999
Q ss_pred HHhhhhhHHHHHHHHHc-CCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhc-------CCC-CC
Q 048744 80 GKMVQMGMIKTAMDLLY-KPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCR-------SSS-EA 150 (312)
Q Consensus 80 ~~l~~~~~i~~lv~~i~-~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~-------~~~-~~ 150 (312)
..+++.|.|+.++..+. +++......++..|.||+..+++...+.+ + .++.|++++.. +.. +.
T Consensus 80 ~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g-------~i~~Lv~ll~~~~s~~~~~~~~~~ 151 (457)
T 1xm9_A 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-D-------ALPVLADRVIIPFSGWCDGNSNMS 151 (457)
T ss_dssp HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-H-------HHHHHHHHTTHHHHTCC-------
T ss_pred HHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-c-------cHHHHHHHHhccccccccCccchh
Confidence 99999999999999999 77788889999999999999877666665 3 37888888842 111 10
Q ss_pred ----CCCchhhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccC------CchhhHhhHHHHHHhhhccchhh-----
Q 048744 151 ----SDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDS------SNYLRKKGVSGTIRNCCFEAEHQ----- 215 (312)
Q Consensus 151 ----~~~~~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~------~s~iRR~gva~~ikNccF~~~~H----- 215 (312)
...-+...+.+|.|++..++.|+.+.+. .|.+..|+..+.+ .+..-.+.++.+++|+|+-.+..
T Consensus 152 ~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~ 230 (457)
T 1xm9_A 152 REVVDPEVFFNATGCLRNLSSADAGRQTMRNY-SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY 230 (457)
T ss_dssp --CCCHHHHHHHHHHHHHHTTSHHHHHHHTTS-TTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHH
T ss_pred cccccHHHHHHHHHHHHHHccCHHHHHHHHHc-CCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchh
Confidence 0111336789999999999999999875 1356666654432 23334556677889987521100
Q ss_pred --------------------------------------------h-HHH------------hhhcc--Chh---hhhhhc
Q 048744 216 --------------------------------------------L-QNL------------LLISE--FLW---PALLLP 233 (312)
Q Consensus 216 --------------------------------------------~-~~l------------l~~~~--~~l---p~lLlP 233 (312)
. +.+ |.... .+. -..|.-
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~n 310 (457)
T 1xm9_A 231 RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQN 310 (457)
T ss_dssp HHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred hhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 0 000 11000 000 133444
Q ss_pred ccC-CCCCChh-------hhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCHhHHHHHHhCCcchhcccccc
Q 048744 234 VAG-NKVYKEE-------DTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRLVHGSGT 303 (312)
Q Consensus 234 laG-~ee~~~e-------e~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~~lr~~~vy~vlr~~~~ 303 (312)
++. ...+..+ +...+|.-+++ +.. .+.++++..+-+|-.|+.....++.+.+.++.++++-...
T Consensus 311 l~~~~~~~~~~~~~~~v~~~~~l~~Lv~L-L~~-----~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~ 382 (457)
T 1xm9_A 311 LTASKGLMSSGMSQLIGLKEKGLPQIARL-LQS-----GNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTS 382 (457)
T ss_dssp HTTCSSSHHHHHHHHHHTTSCCHHHHHHH-TTC-----SCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTS
T ss_pred hccCcCcchHHHHHHHHHHcCCchHHHHH-HhC-----CCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccC
Confidence 553 3333211 22446666663 422 2688999999999999999999999998888777665544
No 3
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.53 E-value=1.7e-13 Score=118.51 Aligned_cols=190 Identities=18% Similarity=0.259 Sum_probs=157.3
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcC-CCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC-CChhHHHH
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLT-GSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS-QNSELAGK 81 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls-~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS-~d~~~~~~ 81 (312)
.+-|+.+|+++++++|..|+..|..++ ++++++..+.+. ++++.|+.++.+. +.+...|+.+|-|++ .++..+..
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDA--GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 567999999999999999999999999 557777777654 6899999999888 889999999999999 56788888
Q ss_pred hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccch-HHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHH
Q 048744 82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI-SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGS 160 (312)
Q Consensus 82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~-~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~ 160 (312)
+++.|.++.++..+.++++.....++..|+||+...... ..+++. | .+..|++++..++. .-..+.+.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~-~i~~L~~ll~~~~~----~v~~~a~~ 160 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA------G-ALPALVQLLSSPNE----QILQEALW 160 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------T-HHHHHHHHTTCSCH----HHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHc------C-cHHHHHHHHcCCCH----HHHHHHHH
Confidence 888899999999999999899999999999999765433 333332 1 47788888876522 23566789
Q ss_pred HHHhhcCC-hhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhh
Q 048744 161 ILVNISKK-EAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCC 209 (312)
Q Consensus 161 vl~NlS~~-~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNcc 209 (312)
+|.|++.. ++.+..+.+.+ .++.|+..+.+++..-|+.++.+|+|+|
T Consensus 161 aL~~l~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 161 ALSNIASGGNEQKQAVKEAG--ALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHTSCHHHHHHHHHTT--HHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCcHHHHHHHHCC--CHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 99999988 88888887764 7788888777788888899999999987
No 4
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=129.97 Aligned_cols=197 Identities=18% Similarity=0.210 Sum_probs=155.5
Q ss_pred hHHHHHhccCCCCH--HHHHHHHHHHHhcC-CCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhH
Q 048744 4 ELEELLGFLCSPSP--SVKKAAVDIVRGLT-GSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSEL 78 (312)
Q Consensus 4 ~l~ELv~FL~~~~~--~vR~~Al~~llgls-~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~ 78 (312)
.++.||++|+++++ +++..|+..|..++ ++++++..|... +.|+.|+.+++.+ ..+...|+.+|-|||. +++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~--G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQL--RGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT--THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 58999999998887 99999999999888 457788888764 6899999999887 8899999999999997 5888
Q ss_pred HHHhhhhhHHHHHHHHHc-CCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHh---cCCC---CCC
Q 048744 79 AGKMVQMGMIKTAMDLLY-KPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFC---RSSS---EAS 151 (312)
Q Consensus 79 ~~~l~~~~~i~~lv~~i~-~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~---~~~~---~~~ 151 (312)
+..+++.|.|+.++..+. .++......++..|-||+..+.+...+.+. .++.|++.+. .|.. ..|
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~--------~i~~Lv~ll~~p~sG~~~~~~~~ 158 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE--------ALLTLTENIIIPFSGWPEGDYPK 158 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH--------HHHHHCCCCCHHHHCCCGGGCCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc--------cHHHHHHHHhccccCCccccccc
Confidence 999999999999999998 467778889999999999999887665441 2667776543 2321 011
Q ss_pred ------CCchhhHHHHHHhhcC-Chhhhhhhcccccchhhhhhhccc------CCchhhHhhHHHHHHhhhcc
Q 048744 152 ------DDPFEHVGSILVNISK-KEAGRKILLDPKRGLLKQIVRQFD------SSNYLRKKGVSGTIRNCCFE 211 (312)
Q Consensus 152 ------~~~~~~la~vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~------~~s~iRR~gva~~ikNccF~ 211 (312)
..-+...+.+|.|+|. -+++|+.|.+.+ |++..|+..+. ..+..-++.++.+++|+||-
T Consensus 159 ~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~-Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 159 ANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCD-GLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTST-THHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCC-CcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 1235678899999998 569999998753 56666665432 13455689999999999984
No 5
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.53 E-value=1.5e-13 Score=121.88 Aligned_cols=234 Identities=19% Similarity=0.204 Sum_probs=179.6
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHh-cCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhHHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRG-LTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSELAG 80 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llg-ls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~~~ 80 (312)
.+++++..|+++++++|..|+..|.. ++.+.+++..+.+. ++++.|+.++.+. ..+...|+.+|-|++. ++..+.
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDA--GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHT--THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHc--CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 57899999999999999999999965 44456677766654 6899999999887 8899999999999997 688899
Q ss_pred HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccch-HHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744 81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI-SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG 159 (312)
Q Consensus 81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~-~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la 159 (312)
.+++.|+++.++..+.++++.....++..|.||+..+... ..+.+.+ .++.|++++..++. .-....+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-------~i~~L~~lL~~~~~----~v~~~a~ 159 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG-------ALPALVQLLSSPNE----QILQEAL 159 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-------HHHHHHHGGGCSCH----HHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCC-------CHHHHHHHHhCCCH----HHHHHHH
Confidence 9999999999999999998899999999999999998766 4444422 37788888855421 1245678
Q ss_pred HHHHhhcCC-hhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCC
Q 048744 160 SILVNISKK-EAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNK 238 (312)
Q Consensus 160 ~vl~NlS~~-~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~e 238 (312)
.+|.|++.. ++.+..+.+. |.+..|+..+.++++.-|..++.+|.|+|...+.+...+. +.+.+|.|+--+.
T Consensus 160 ~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~g~i~~L~~ll~--- 232 (252)
T 4db8_A 160 WALSNIASGGNEQIQAVIDA--GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK--EAGALEKLEQLQS--- 232 (252)
T ss_dssp HHHHHHTTSCHHHHHHHHHT--TCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHH--HTTHHHHHHTTTT---
T ss_pred HHHHHHHcCChHHHHHHHHC--CCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH--HCCcHHHHHHHhC---
Confidence 999999984 5666677665 4788888877777888899999999999976655532222 2234444422111
Q ss_pred CCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc
Q 048744 239 VYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL 281 (312)
Q Consensus 239 e~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~ 281 (312)
. .++++|...+.+|..||+
T Consensus 233 ----------------------~--~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 233 ----------------------H--ENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp ----------------------C--SSSHHHHTHHHHHHTTC-
T ss_pred ----------------------C--CCHHHHHHHHHHHHHHhc
Confidence 1 267899999999888764
No 6
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.51 E-value=5.3e-13 Score=127.53 Aligned_cols=242 Identities=18% Similarity=0.175 Sum_probs=179.6
Q ss_pred hHHHHHhccC-----------CCCHHHHHHHHHHHHhcCCCcc-chhhhhhcccchHHHHHHhhccC-ccchhhHHHHHH
Q 048744 4 ELEELLGFLC-----------SPSPSVKKAAVDIVRGLTGSED-GLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALV 70 (312)
Q Consensus 4 ~l~ELv~FL~-----------~~~~~vR~~Al~~llgls~~~~-~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~Li 70 (312)
.++-|+.+|. +.++++|..|+..|..++...+ ++..|.... ++|+.|+.+++.+ ..+..+|+.+|-
T Consensus 74 ~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~-GaIp~LV~LL~s~~~~v~~~A~~aL~ 152 (354)
T 3nmw_A 74 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK-GCMRALVAQLKSESEDLQQVIASVLR 152 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH-HHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC-CcHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3667888883 2468999999999999997654 666664443 6899999999877 889999999999
Q ss_pred hcCC--ChhHHHHhhhhhHHHHHHHHH-cCCCChhHHHHHHHHHhhcC-CccchHHHhhhhhhhhhhhhHHHHHHHHhcC
Q 048744 71 NLSQ--NSELAGKMVQMGMIKTAMDLL-YKPDSSITRLLVMLLVNLTQ-LDYGISSLLQVEDEQIQGLYVMKLVRSFCRS 146 (312)
Q Consensus 71 NLS~--d~~~~~~l~~~~~i~~lv~~i-~~~~~~~ad~a~mLLsNLT~-~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~ 146 (312)
|||. ++..+..+++.|.|+.|+..+ ..++......++..|.||+. .+.+...+... .| .++.|++++..+
T Consensus 153 nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~-----~G-ai~~Lv~lL~~~ 226 (354)
T 3nmw_A 153 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV-----DG-ALAFLVGTLTYR 226 (354)
T ss_dssp HHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHS-----TT-HHHHHHHHTTCC
T ss_pred HHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHh-----cC-cHHHHHHHhccC
Confidence 9996 467888999889999999975 45566777889999999998 55655554421 12 488999998765
Q ss_pred CCCCCCCchhhHHHHHHhhcC----ChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhh
Q 048744 147 SSEASDDPFEHVGSILVNISK----KEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLI 222 (312)
Q Consensus 147 ~~~~~~~~~~~la~vl~NlS~----~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~ 222 (312)
.......-....+.+|.|+|. .+++|+.+.+.+ .+..|+..+.+++..-++.++++|.|+|...+.....+..
T Consensus 227 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~- 303 (354)
T 3nmw_A 227 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN--CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD- 303 (354)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHH-
T ss_pred CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC--CHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHH-
Confidence 432111124567899999995 899999998864 6888888778888888999999999999754444223322
Q ss_pred ccChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCH
Q 048744 223 SEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQE 283 (312)
Q Consensus 223 ~~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~ 283 (312)
...+|.|.-- +. . .++.+|...+.+|..|++.+
T Consensus 304 -~G~i~~Lv~L----------------------L~---s--~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 304 -MGAVSMLKNL----------------------IH---S--KHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp -TTHHHHHHTT----------------------TT---C--SSHHHHHHHHHHHHHHHTTC
T ss_pred -CCCHHHHHHH----------------------Hh---C--CCHHHHHHHHHHHHHHHcCC
Confidence 3444444211 11 1 27889999999999998763
No 7
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.50 E-value=3.5e-13 Score=136.83 Aligned_cols=249 Identities=15% Similarity=0.091 Sum_probs=191.5
Q ss_pred hHHHHHhccCC-CCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHH
Q 048744 4 ELEELLGFLCS-PSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAG 80 (312)
Q Consensus 4 ~l~ELv~FL~~-~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~ 80 (312)
.++.|+.+|.+ .++++|..|+..|..++...+++..+.+. +.++.|+.++++. ..+...|+.+|.|++.+ +....
T Consensus 57 ~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 134 (644)
T 2z6h_A 57 MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134 (644)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTT--THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHc--CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence 47889999985 59999999999999999998898888764 6899999999888 88999999999999865 46667
Q ss_pred HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC-CccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744 81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ-LDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG 159 (312)
Q Consensus 81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~-~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la 159 (312)
.+.+.|+|+.++..+.++++.....++..|.||+. .+++...+.+.+ .+..|++++..+.. .......+
T Consensus 135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g-------~v~~Lv~lL~~~~~---~~~~~~a~ 204 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG-------GPQALVNIMRTYTY---EKLLWTTS 204 (644)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-------HHHHHHHHHTTCCC---HHHHHHHH
T ss_pred HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcC-------ChHHHHHHHHcCCh---HHHHHHHH
Confidence 77788999999999999877766677889999996 555555554432 37788888866532 12245578
Q ss_pred HHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCCC
Q 048744 160 SILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKV 239 (312)
Q Consensus 160 ~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee 239 (312)
.+|.|++..+++|..+++.+ .+..++..+.+.+..-|+.++.+++|+|.+..... . ...+
T Consensus 205 ~~L~nLs~~~~~~~~l~~~g--~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~--~---~~~~------------- 264 (644)
T 2z6h_A 205 RVLKVLSVCSSNKPAIVEAG--GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--G---MEGL------------- 264 (644)
T ss_dssp HHHHHHTTCTTHHHHHHHTT--HHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCC--S---CHHH-------------
T ss_pred HHHHHHhcCcccHHHHHHCC--CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhh--h---hhhH-------------
Confidence 99999999999999999864 78888888777777788899999999997542210 0 0012
Q ss_pred CChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcC-HhHHHHHHhCCcchhc
Q 048744 240 YKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQ-EAGLRAFWSVNGPRLV 298 (312)
Q Consensus 240 ~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t-~~gR~~lr~~~vy~vl 298 (312)
+|.-+++ +. . +|+++|...+.+|..||.. ...|+.+.+.|+.+.|
T Consensus 265 --------i~~Lv~l-L~---~--~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~L 310 (644)
T 2z6h_A 265 --------LGTLVQL-LG---S--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310 (644)
T ss_dssp --------HHHHHHH-TT---C--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred --------HHHHHHH-Hc---C--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHH
Confidence 2222332 22 1 2789999999999999875 4678888887766643
No 8
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.49 E-value=6.3e-13 Score=116.88 Aligned_cols=197 Identities=20% Similarity=0.275 Sum_probs=163.2
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC-CChhHHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS-QNSELAG 80 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS-~d~~~~~ 80 (312)
-++.|+++|+++++++|..|+..|..++.. ++++..+.+. +.++.|+.++.++ ..+...|+.+|-||+ .++..+.
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 122 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA--GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 478899999999999999999999999988 7777777654 6899999999888 889999999999999 6788899
Q ss_pred HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccch-HHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744 81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI-SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG 159 (312)
Q Consensus 81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~-~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la 159 (312)
.+.+.|+++.++..+.++++.....++..|.||+...... ..+.+. | .+..|++++..++. .-..+.+
T Consensus 123 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------~-~i~~L~~ll~~~~~----~v~~~a~ 191 (252)
T 4hxt_A 123 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA------G-GVEVLVKLLTSTDS----EVQKEAA 191 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------T-HHHHHHHHTTCSCH----HHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC------c-CHHHHHHHHCCCCH----HHHHHHH
Confidence 9999999999999999999899999999999999866544 333332 1 37788888875432 2346678
Q ss_pred HHHHhhcC-ChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhh
Q 048744 160 SILVNISK-KEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQ 215 (312)
Q Consensus 160 ~vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H 215 (312)
.++.|++. .++.++.+.+. |.++.++..+.++++.-|+.++.+|.|++.....+
T Consensus 192 ~~L~~l~~~~~~~~~~l~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 192 RALANIASGPTSAIKAIVDA--GGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHTTSBHHHHHHHHHT--THHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 99999997 77778888875 47888888777788888999999999999865544
No 9
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.48 E-value=6.8e-13 Score=117.67 Aligned_cols=192 Identities=18% Similarity=0.261 Sum_probs=157.4
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCC-CccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHH-H
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTG-SEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELA-G 80 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~-~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~-~ 80 (312)
.++.|+++|+++++++|..|+..|..++. +++++..+.+. +.++.|+.++.++ ..+...|+.+|-||+.++... .
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 132 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA--GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH
Confidence 46789999999999999999999999997 57788777664 6899999999888 889999999999999998877 8
Q ss_pred HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccch-HHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744 81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI-SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG 159 (312)
Q Consensus 81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~-~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la 159 (312)
.+.+.|+++.++..+.++++.....++..|.||+...... ..+.+. | .+..|++++..++. .-....+
T Consensus 133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~-~i~~L~~ll~~~~~----~v~~~a~ 201 (252)
T 4db8_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA------G-ALPALVQLLSSPNE----QILQEAL 201 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------T-CHHHHHHGGGCSSH----HHHHHHH
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC------C-CHHHHHHHHCCCCH----HHHHHHH
Confidence 8888899999999999998889999999999999866433 333332 1 47888888865521 1246678
Q ss_pred HHHHhhc-CChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhc
Q 048744 160 SILVNIS-KKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCF 210 (312)
Q Consensus 160 ~vl~NlS-~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF 210 (312)
.+|.|++ ..++.+..+++. |.+..++..+.++++.-|+.++.+|.|+|-
T Consensus 202 ~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 202 WALSNIASGGNEQKQAVKEA--GALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTSCHHHHHHHHHT--THHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHhcCCHHHHHHHHHC--CcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 9999998 467778888765 478888887777788888999999999983
No 10
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.47 E-value=5.8e-13 Score=127.25 Aligned_cols=197 Identities=16% Similarity=0.155 Sum_probs=159.9
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCC--ccchhhhhhcccchHHHHHHhh-ccC-ccchhhHHHHHHhcCC-ChhH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS--EDGLQSLSKYSKIALPSLARLL-SEN-KEVSEPATEALVNLSQ-NSEL 78 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~--~~~~~~i~~~~~~~i~~L~~L~-~d~-~~~~~~Al~~LiNLS~-d~~~ 78 (312)
.++.||++|+++++++|..|+..|..++.. +++|..|... +.|+.|+.++ +.+ ..+.+.|+.+|-|||. ++..
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~--G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV--GSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHT--THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHC--CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 388999999999999999999999999874 5677777653 6899999974 444 6788999999999998 6777
Q ss_pred HHHhh-hhhHHHHHHHHHcCCCC----hhHHHHHHHHHhhcC----CccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCC
Q 048744 79 AGKMV-QMGMIKTAMDLLYKPDS----SITRLLVMLLVNLTQ----LDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSE 149 (312)
Q Consensus 79 ~~~l~-~~~~i~~lv~~i~~~~~----~~ad~a~mLLsNLT~----~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~ 149 (312)
+..++ ..|+|+.|+..+.++.. .....++..|.||+. .+++...+.+.+ .++.|++.+..++..
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g-------~i~~Lv~lL~~~~~~ 278 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN-------CLQTLLQHLKSHSLT 278 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT-------HHHHHHHHTTCSCHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC-------CHHHHHHHHcCCChH
Confidence 88888 56999999999987654 377889999999995 677666655532 378999998766432
Q ss_pred CCCCchhhHHHHHHhhc-CChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhh
Q 048744 150 ASDDPFEHVGSILVNIS-KKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQ 215 (312)
Q Consensus 150 ~~~~~~~~la~vl~NlS-~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H 215 (312)
-....+.++.|++ ..++.|+.+++. |.+..|+..+.+++..-|+.++.+|+|++.+....
T Consensus 279 ----v~~~A~~aL~nLa~~~~~~~~~i~~~--G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 279 ----IVSNACGTLWNLSARNPKDQEALWDM--GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp ----HHHHHHHHHHHHTSSCHHHHHHHHHT--THHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred ----HHHHHHHHHHHHhCCCHHHHHHHHHC--CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 2455789999999 589999999876 47788887777777777999999999999876554
No 11
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.47 E-value=6.3e-13 Score=129.74 Aligned_cols=248 Identities=15% Similarity=0.088 Sum_probs=190.1
Q ss_pred hHHHHHhccC-CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHH
Q 048744 4 ELEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAG 80 (312)
Q Consensus 4 ~l~ELv~FL~-~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~ 80 (312)
.++.|+++|+ ++++++|..|+..|..++..++++..+.+. +.++.|+.+++++ +.+...|+.+|.|++.+ +....
T Consensus 60 ~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 137 (529)
T 1jdh_A 60 MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137 (529)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHH
Confidence 5788999997 459999999999999999998898888764 6899999999887 78999999999999976 56677
Q ss_pred HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCC-ccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744 81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQL-DYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG 159 (312)
Q Consensus 81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~-~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la 159 (312)
.+.+.|+++.+++.+.+++......++..|.|++.. +++...+.+.+ .+..|++++..+... ......+
T Consensus 138 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~-------~i~~L~~ll~~~~~~---~~~~~a~ 207 (529)
T 1jdh_A 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG-------GPQALVNIMRTYTYE---KLLWTTS 207 (529)
T ss_dssp HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-------HHHHHHHHHHHCCCH---HHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC-------CHHHHHHHHHhCChH---HHHHHHH
Confidence 777889999999999998877777888899999985 34444444421 367888877665321 2234567
Q ss_pred HHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCCC
Q 048744 160 SILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKV 239 (312)
Q Consensus 160 ~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee 239 (312)
.++.|++..+++|..+++.+ .+..++..+.+.+..-|+.++.++.|+|.+..... ...
T Consensus 208 ~~L~~l~~~~~~~~~~~~~g--~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~--------------- 265 (529)
T 1jdh_A 208 RVLKVLSVCSSNKPAIVEAG--GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE-----GME--------------- 265 (529)
T ss_dssp HHHHHHTTSTTHHHHHHHTT--HHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS-----CCH---------------
T ss_pred HHHHHHhcCcccHHHHHHCC--CHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH-----HHH---------------
Confidence 89999999999999999864 78888887776677677889999999997542210 000
Q ss_pred CChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcC-HhHHHHHHhCCcchh
Q 048744 240 YKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQ-EAGLRAFWSVNGPRL 297 (312)
Q Consensus 240 ~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t-~~gR~~lr~~~vy~v 297 (312)
..+|.-+++ +. . +|+++|...+.+|..||.. ...++.+.+.|+.+.
T Consensus 266 ------~~i~~L~~l-l~---~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~ 312 (529)
T 1jdh_A 266 ------GLLGTLVQL-LG---S--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312 (529)
T ss_dssp ------HHHHHHHHH-TT---C--SCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHH
T ss_pred ------hHHHHHHHH-Hc---C--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Confidence 123333332 31 1 3899999999999999885 468888888877653
No 12
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.44 E-value=3.8e-12 Score=133.17 Aligned_cols=258 Identities=14% Similarity=0.137 Sum_probs=193.4
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC--ChhHHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ--NSELAG 80 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~--d~~~~~ 80 (312)
.++-|+++|+++++++|..|+..|..+++++++|..+.+. ++++.|+.++..+ ....+.|..+|-||+. ++...-
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~--Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~ 573 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQE--GGVKALLRMALEGTEKGKRHATQALARIGITINPEVSF 573 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHT--THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhh
Confidence 4788999999999999999999999999998999888775 7899999999887 7789999999999974 443221
Q ss_pred Hh-hhhhHHHHHHHHHcCCCChh-HHHHHHHHHhhcCCc-cchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhh
Q 048744 81 KM-VQMGMIKTAMDLLYKPDSSI-TRLLVMLLVNLTQLD-YGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEH 157 (312)
Q Consensus 81 ~l-~~~~~i~~lv~~i~~~~~~~-ad~a~mLLsNLT~~~-~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~ 157 (312)
.. ...++|+.|+..+..+.... .-.+++.|+||+... +.+.++++.+ ++++|++++..+.. .-+..
T Consensus 574 ~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG-------~l~~Lv~LL~s~~~----~Vq~~ 642 (810)
T 3now_A 574 SGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ-------GVSKIEYYLMEDHL----YLTRA 642 (810)
T ss_dssp TTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-------HHHHHHHHHHSCCT----THHHH
T ss_pred cchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcC-------CHHHHHHHHcCCCH----HHHHH
Confidence 00 01368999999887543433 236999999999985 4455555532 47899998876532 23556
Q ss_pred HHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCC
Q 048744 158 VGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGN 237 (312)
Q Consensus 158 la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ 237 (312)
.+..++|++..++.+..|.. +.+.++.|+..+.+++..=|+-++++|.|++-..+.....++.. .+.+|.|.
T Consensus 643 A~~~L~NLa~~~~~~~~~v~-~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~-~g~I~~Lv------ 714 (810)
T 3now_A 643 AAQCLCNLVMSEDVIKMFEG-NNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI-ASWLDILH------ 714 (810)
T ss_dssp HHHHHHHHTTSHHHHHHHHS-SSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS-TTHHHHHH------
T ss_pred HHHHHHHHhCChHHHHHHHh-ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH-cCCHHHHH------
Confidence 78999999999999999984 34678888887777777677778899999998433333244442 34444442
Q ss_pred CCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhcccccc
Q 048744 238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLVHGSGT 303 (312)
Q Consensus 238 ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vlr~~~~ 303 (312)
++ +. . .|..+|...+.+|..|++ +.+-++++.+.|+.+.|.+...
T Consensus 715 ---------------~L-L~---s--~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~ 760 (810)
T 3now_A 715 ---------------TL-IA---N--PSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQ 760 (810)
T ss_dssp ---------------HH-HT---C--SSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCC
T ss_pred ---------------HH-HC---C--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHh
Confidence 21 22 1 389999999999999975 5677889999999998877653
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.44 E-value=5.8e-12 Score=124.84 Aligned_cols=255 Identities=18% Similarity=0.207 Sum_probs=188.3
Q ss_pred hHHHHHhccC-CCCHHHHHHHHHHHHhc-CCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744 4 ELEELLGFLC-SPSPSVKKAAVDIVRGL-TGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA 79 (312)
Q Consensus 4 ~l~ELv~FL~-~~~~~vR~~Al~~llgl-s~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~ 79 (312)
-++-||+||+ +.++++|..|+..|..+ +++++++..+... ++|+.|+.++.++ ..+...|+.+|-|++.| +..+
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~--GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r 178 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG--GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 178 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 3788999998 56899999999999988 5678888877764 7899999999888 88999999999999976 6778
Q ss_pred HHhhhhhHHHHHHHHHcCCCCh-----hHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCc
Q 048744 80 GKMVQMGMIKTAMDLLYKPDSS-----ITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDP 154 (312)
Q Consensus 80 ~~l~~~~~i~~lv~~i~~~~~~-----~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~ 154 (312)
..+.+.|++..++..+.+++.. ....++..|+|+++.......+... .+ .++.|+.++..+.. .-
T Consensus 179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~-----~~-~lp~L~~LL~~~~~----~v 248 (510)
T 3ul1_B 179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV-----EQ-ILPTLVRLLHHNDP----EV 248 (510)
T ss_dssp HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHH-----HH-HHHHHHHHTTCSCH----HH
T ss_pred HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHH-----Hh-HHHHHHHHHhcCCH----HH
Confidence 8888889999999999876532 4557889999999987544432221 11 35667766654422 12
Q ss_pred hhhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcc
Q 048744 155 FEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPV 234 (312)
Q Consensus 155 ~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPl 234 (312)
....+..|+|++..+..+..++.. .|.+..|+..+.+.+..-+..++.+|.|+|...+.....++. ...+|.+.--
T Consensus 249 ~~~A~~aL~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~--~g~l~~L~~L- 324 (510)
T 3ul1_B 249 LADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID--AGALAVFPSL- 324 (510)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTGGGGCC-C-
T ss_pred HHHHHHHHHHHhhchhhhHHHHHh-cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhh--ccchHHHHHH-
Confidence 456789999999987776554432 257788888777788878889999999999876665323332 2334433211
Q ss_pred cCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhccc
Q 048744 235 AGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLVHG 300 (312)
Q Consensus 235 aG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vlr~ 300 (312)
+. . +++.||...+-+|-.||+ +...++.+.+.|+.+.|-.
T Consensus 325 ---------------------L~---~--~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~ 365 (510)
T 3ul1_B 325 ---------------------LT---N--PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365 (510)
T ss_dssp ---------------------TT---C--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred ---------------------hc---C--CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHH
Confidence 11 1 278899999999999986 6777888888888876544
No 14
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.43 E-value=2.3e-12 Score=130.48 Aligned_cols=274 Identities=17% Similarity=0.172 Sum_probs=186.8
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCC-CccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC--ChhHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTG-SEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ--NSELA 79 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~-~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~--d~~~~ 79 (312)
.++.||++|.+++++++..|+..|..++. +.+++..|... +.|+.|+.++..+ ..+...|+.+|-|||. ++..+
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~--G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKL--KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHc--CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 58999999999999999999999999985 68888888764 6899999999888 8899999999999997 48899
Q ss_pred HHhhhhhHHHHHHHHHcCC-CChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhc---CCCC-----C
Q 048744 80 GKMVQMGMIKTAMDLLYKP-DSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCR---SSSE-----A 150 (312)
Q Consensus 80 ~~l~~~~~i~~lv~~i~~~-~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~---~~~~-----~ 150 (312)
..+++.|.|+.|+..+.+. .......++..|.||+.++++...+.. + .++.|++++.. |... .
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~---~-----alp~Lv~LL~~p~sg~~~~~~~~~ 198 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD---H-----ALHALTDEVIIPHSGWEREPNEDC 198 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH---H-----THHHHHHHTHHHHHCCC-------
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh---c-----cHHHHHHHHhcccccccccccccc
Confidence 9999999999999999874 455678899999999999987776653 1 26777776531 2110 0
Q ss_pred C------CCchhhHHHHHHhhcCCh-hhhhhhcccccchhhhhhhccc------CCchhhHhhHHHHHHhhhccchhhhH
Q 048744 151 S------DDPFEHVGSILVNISKKE-AGRKILLDPKRGLLKQIVRQFD------SSNYLRKKGVSGTIRNCCFEAEHQLQ 217 (312)
Q Consensus 151 ~------~~~~~~la~vl~NlS~~~-~gR~~~l~~~~~~l~~ll~~~~------~~s~iRR~gva~~ikNccF~~~~H~~ 217 (312)
| ..-+...+.+|.|||... ++|+.+.+.+ |++..|+..+. ..+..-.+.++.+|+|+||......+
T Consensus 199 k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~-Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~ 277 (584)
T 3l6x_A 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECD-GLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIP 277 (584)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHST-THHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHST
T ss_pred cccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcC-CcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccccc
Confidence 1 112456789999999875 6799998753 56666666443 14455678899999999996322100
Q ss_pred ---HHhhhccChhhhhhhcccCCCCCChhhhcc------CcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCH-----
Q 048744 218 ---NLLLISEFLWPALLLPVAGNKVYKEEDTSK------IPLELASALRIEREPVDDPEIRIQALESIYLITLQE----- 283 (312)
Q Consensus 218 ---~ll~~~~~~lp~lLlPlaG~ee~~~ee~~~------lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~----- 283 (312)
.+... .+. --.|+...+.+-.+. ++.-+.+ +.. . ..+.++...+-||..||+.+
T Consensus 278 ~~~~~~~~----~~~---~~~~~~~~~~~Gve~L~~~~~v~~Ll~L-L~~-s---~~~~v~E~Aa~AL~nL~ag~~~~~~ 345 (584)
T 3l6x_A 278 QAERYQEA----APN---VANNTGTSPARGYELLFQPEVVRIYISL-LKE-S---KTPAILEASAGAIQNLCAGRWTYGR 345 (584)
T ss_dssp TCCC---------------------CCCCGGGGGGSHHHHHHHHHH-HHH-C---CCHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred chhhhhhh----ccc---ccccccccCchhHHHHhcccHHHHHHHH-Hcc-C---CCHHHHHHHHHHHHHHHcCCccccH
Confidence 01000 000 001221111111111 1111211 211 1 25899999999999999754
Q ss_pred hHHHHHHhCCcchhccc
Q 048744 284 AGLRAFWSVNGPRLVHG 300 (312)
Q Consensus 284 ~gR~~lr~~~vy~vlr~ 300 (312)
.-|..+|+.++.++|-+
T Consensus 346 ~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 346 YIRSALRQEKALSAIAD 362 (584)
T ss_dssp HHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHH
Confidence 23557777777765544
No 15
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.39 E-value=9.7e-12 Score=122.68 Aligned_cols=242 Identities=18% Similarity=0.187 Sum_probs=178.3
Q ss_pred hHHHHHhccC-----------CCCHHHHHHHHHHHHhcCCCcc-chhhhhhcccchHHHHHHhhccC-ccchhhHHHHHH
Q 048744 4 ELEELLGFLC-----------SPSPSVKKAAVDIVRGLTGSED-GLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALV 70 (312)
Q Consensus 4 ~l~ELv~FL~-----------~~~~~vR~~Al~~llgls~~~~-~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~Li 70 (312)
.++-|+.+|. +.++.++..|+..|..++...+ ++..+.... ++|+.|+.++..+ ..+..+|+.+|-
T Consensus 190 ~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~-GaIp~LV~LL~s~~~~v~~~A~~aL~ 268 (458)
T 3nmz_A 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK-GCMRALVAQLKSESEDLQQVIASVLR 268 (458)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCH-HHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcC-CcHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3667888883 2468899999999999997654 665564433 6899999999877 889999999999
Q ss_pred hcCC--ChhHHHHhhhhhHHHHHHHHHcC-CCChhHHHHHHHHHhhcC-CccchHHHhhhhhhhhhhhhHHHHHHHHhcC
Q 048744 71 NLSQ--NSELAGKMVQMGMIKTAMDLLYK-PDSSITRLLVMLLVNLTQ-LDYGISSLLQVEDEQIQGLYVMKLVRSFCRS 146 (312)
Q Consensus 71 NLS~--d~~~~~~l~~~~~i~~lv~~i~~-~~~~~ad~a~mLLsNLT~-~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~ 146 (312)
|||. ++..+..+++.|.|+.|+..+.. ++......++..|.||+. .+.+..++... .| .++.|++++..+
T Consensus 269 nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~-----~G-al~~Lv~LL~~~ 342 (458)
T 3nmz_A 269 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV-----DG-ALAFLVGTLTYR 342 (458)
T ss_dssp HHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHS-----TT-HHHHHHHHTTCC
T ss_pred HHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHh-----cC-cHHHHHHHhcCC
Confidence 9997 46788889988999999998654 555677788999999998 66665555421 12 488899998766
Q ss_pred CCCCCCCchhhHHHHHHhhcC----ChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhh
Q 048744 147 SSEASDDPFEHVGSILVNISK----KEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLI 222 (312)
Q Consensus 147 ~~~~~~~~~~~la~vl~NlS~----~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~ 222 (312)
.....-.-....+.+|.|||. .+++|+.+.+.+ .+..|+..+.+++..-++.++++|.|+|.....+...+..
T Consensus 343 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G--~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~- 419 (458)
T 3nmz_A 343 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN--CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD- 419 (458)
T ss_dssp CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHH-
T ss_pred CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc--cHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHH-
Confidence 432110124557889999994 899999998864 6888888777788888999999999999644444223332
Q ss_pred ccChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCH
Q 048744 223 SEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQE 283 (312)
Q Consensus 223 ~~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~ 283 (312)
...+|.| +++ +. . .++.++...+.+|..|++.+
T Consensus 420 -~G~I~~L---------------------v~L-L~---s--~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 420 -MGAVSML---------------------KNL-IH---S--KHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp -HTHHHHH---------------------HTT-TT---C--SSHHHHHHHHHHHHHHHTCC
T ss_pred -CCCHHHH---------------------HHH-Hh---C--CCHHHHHHHHHHHHHHHcCC
Confidence 2334443 221 21 1 27889999999999998753
No 16
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.37 E-value=1.3e-11 Score=120.97 Aligned_cols=119 Identities=21% Similarity=0.237 Sum_probs=100.3
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhc-cC-ccchhhHHHHHHhcCCChhHHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLS-EN-KEVSEPATEALVNLSQNSELAG 80 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~-d~-~~~~~~Al~~LiNLS~d~~~~~ 80 (312)
.++.||++|++++++++..|+..|..++.. ++++..|... +.|+.|+.+++ .+ ..+...|+.+|-|||.++..+.
T Consensus 45 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~--G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~ 122 (457)
T 1xm9_A 45 GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ--NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122 (457)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT--TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc--CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH
Confidence 478899999999999999999999999976 8888888764 68999999998 55 7899999999999999988999
Q ss_pred HhhhhhHHHHHHHHHc--------CCC--------ChhHHHHHHHHHhhcCCccchHHHhh
Q 048744 81 KMVQMGMIKTAMDLLY--------KPD--------SSITRLLVMLLVNLTQLDYGISSLLQ 125 (312)
Q Consensus 81 ~l~~~~~i~~lv~~i~--------~~~--------~~~ad~a~mLLsNLT~~~~~~~~ll~ 125 (312)
.+++ |+|+.++..+. ++. ......++..|+||++.+++...+.+
T Consensus 123 ~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~ 182 (457)
T 1xm9_A 123 ELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182 (457)
T ss_dssp HHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTT
T ss_pred HHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999 99999999993 221 23444899999999998766555554
No 17
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.37 E-value=6.1e-12 Score=124.10 Aligned_cols=195 Identities=16% Similarity=0.156 Sum_probs=158.2
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCC--ccchhhhhhcccchHHHHHHhh-ccC-ccchhhHHHHHHhcCC-ChhH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS--EDGLQSLSKYSKIALPSLARLL-SEN-KEVSEPATEALVNLSQ-NSEL 78 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~--~~~~~~i~~~~~~~i~~L~~L~-~d~-~~~~~~Al~~LiNLS~-d~~~ 78 (312)
.++.|+++|++++++++..|+..|..++.. +++|..|... +.|+.|+.++ +.+ ..+.+.|+.+|-|||. ++..
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~--GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n 321 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV--GSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT--THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc--CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH
Confidence 388999999999999999999999999974 5677777653 6899999974 444 6788999999999998 7788
Q ss_pred HHHhh-hhhHHHHHHHHHcCCCCh----hHHHHHHHHHhhcC----CccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCC
Q 048744 79 AGKMV-QMGMIKTAMDLLYKPDSS----ITRLLVMLLVNLTQ----LDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSE 149 (312)
Q Consensus 79 ~~~l~-~~~~i~~lv~~i~~~~~~----~ad~a~mLLsNLT~----~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~ 149 (312)
+..++ ..|+|+.|+..+..+... ....++..|+||+. .+++...+.+.+ .++.|++++..+...
T Consensus 322 k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G-------~i~~Lv~LL~~~~~~ 394 (458)
T 3nmz_A 322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN-------CLQTLLQHLKSHSLT 394 (458)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-------HHHHHHHHSSCSCHH
T ss_pred HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc-------cHHHHHHHHcCCChH
Confidence 88888 569999999999876653 78889999999994 666665555532 378999998766432
Q ss_pred CCCCchhhHHHHHHhhc-CChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccch
Q 048744 150 ASDDPFEHVGSILVNIS-KKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAE 213 (312)
Q Consensus 150 ~~~~~~~~la~vl~NlS-~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~ 213 (312)
-....+.++.|++ ..++.|..+++. |.+..|+..+.+++..-|+.++.+|+|++....
T Consensus 395 ----v~~~A~~aL~nLa~~~~~~~~~i~~~--G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 395 ----IVSNACGTLWNLSARNPKDQEALWDM--GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp ----HHHHHHHHHHHHHSSCHHHHHHHHHH--THHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 2456789999999 689999999886 467777777777777778999999999997643
No 18
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.36 E-value=1.9e-11 Score=123.91 Aligned_cols=260 Identities=18% Similarity=0.202 Sum_probs=177.6
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCC--CccchhhhhhcccchHHHHHHhhccC--ccchhhHHHHHHhcCCChhHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTG--SEDGLQSLSKYSKIALPSLARLLSEN--KEVSEPATEALVNLSQNSELA 79 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~--~~~~~~~i~~~~~~~i~~L~~L~~d~--~~~~~~Al~~LiNLS~d~~~~ 79 (312)
.++.||++|++++++||..|+..|..++. +.+++..|.+. +.|+.|+.+++.. ..+.+.|..+|.|||.++..+
T Consensus 91 ~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~--GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k 168 (584)
T 3l6x_A 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNC--DGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168 (584)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHT--THHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHc--CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence 58899999999999999999999999997 48899988765 6899999999863 567899999999999999999
Q ss_pred HHhhhhhHHHHHHHHHcC------------------CCChhHHHHHHHHHhhcCCccc-hHHHhhhhhhhhhhhhHHHHH
Q 048744 80 GKMVQMGMIKTAMDLLYK------------------PDSSITRLLVMLLVNLTQLDYG-ISSLLQVEDEQIQGLYVMKLV 140 (312)
Q Consensus 80 ~~l~~~~~i~~lv~~i~~------------------~~~~~ad~a~mLLsNLT~~~~~-~~~ll~~~~e~~~~~~l~~Ll 140 (312)
..|++ +.|+.|+..+.. +.......++..|.||+...+. ...+.+.. | .+..|+
T Consensus 169 ~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~-----G-li~~LV 241 (584)
T 3l6x_A 169 MEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECD-----G-LVDALI 241 (584)
T ss_dssp HHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHST-----T-HHHHHH
T ss_pred HHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcC-----C-cHHHHH
Confidence 99995 568999887621 1235566799999999998754 44554432 2 245777
Q ss_pred HHHhcCC--CCCCCCchhhHHHHHHhhcCChh--------------------------hhhhhcccccchhhhhhhccc-
Q 048744 141 RSFCRSS--SEASDDPFEHVGSILVNISKKEA--------------------------GRKILLDPKRGLLKQIVRQFD- 191 (312)
Q Consensus 141 ~~f~~~~--~~~~~~~~~~la~vl~NlS~~~~--------------------------gR~~~l~~~~~~l~~ll~~~~- 191 (312)
..+-... .............+|.|||...+ |-.++.+++ .++.++..+.
T Consensus 242 ~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~--~v~~Ll~LL~~ 319 (584)
T 3l6x_A 242 FIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPE--VVRIYISLLKE 319 (584)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHH--HHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhccc--HHHHHHHHHcc
Confidence 7665321 11111235667788999886532 222222221 2344455443
Q ss_pred CCchhhHhhHHHHHHhhhccchhhhH---HHhhhccChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChHH
Q 048744 192 SSNYLRKKGVSGTIRNCCFEAEHQLQ---NLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEI 268 (312)
Q Consensus 192 ~~s~iRR~gva~~ikNccF~~~~H~~---~ll~~~~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~I 268 (312)
+.+.--++.++++|.|+|.....+.. ..+. ....+|.|.--|.. .++.+
T Consensus 320 s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~-~~~glp~Lv~LL~s---------------------------~~~~v 371 (584)
T 3l6x_A 320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALR-QEKALSAIADLLTN---------------------------EHERV 371 (584)
T ss_dssp CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHT-SHHHHHHHHHGGGC---------------------------SCHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHH-HcCcHHHHHHHHcC---------------------------CCHHH
Confidence 45677789999999999986533210 1121 22334544322222 15678
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHhCCcchhccccc
Q 048744 269 RIQALESIYLITLQEAGLRAFWSVNGPRLVHGSG 302 (312)
Q Consensus 269 r~~llE~Ll~L~~t~~gR~~lr~~~vy~vlr~~~ 302 (312)
+...+-+|-.|+.-..-++.+...+++++++-..
T Consensus 372 ~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~ 405 (584)
T 3l6x_A 372 VKAASGALRNLAVDARNKELIGKHAIPNLVKNLP 405 (584)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhc
Confidence 8888888888888777778887777776665433
No 19
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.36 E-value=2.9e-11 Score=120.17 Aligned_cols=255 Identities=17% Similarity=0.198 Sum_probs=186.5
Q ss_pred hHHHHHhccC-CCCHHHHHHHHHHHHhcCC-CccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744 4 ELEELLGFLC-SPSPSVKKAAVDIVRGLTG-SEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA 79 (312)
Q Consensus 4 ~l~ELv~FL~-~~~~~vR~~Al~~llgls~-~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~ 79 (312)
-++-||+||+ +.+++++..|+..|..++. +.+....+... ++|+.|+.++.+. ..+...|+.+|-|++.+ +..+
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~--Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG--GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 3678999997 5789999999999999865 45565666653 7899999999888 88999999999999975 7888
Q ss_pred HHhhhhhHHHHHHHHHcCCCCh-----hHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCc
Q 048744 80 GKMVQMGMIKTAMDLLYKPDSS-----ITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDP 154 (312)
Q Consensus 80 ~~l~~~~~i~~lv~~i~~~~~~-----~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~ 154 (312)
..+++.|++..++..+.++... ....++..|+|+++.......+... .+ .++.|+.++..+.. .-
T Consensus 198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~-----~~-~lp~L~~LL~~~~~----~v 267 (529)
T 3tpo_A 198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV-----EQ-ILPTLVRLLHHNDP----EV 267 (529)
T ss_dssp HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHH-----HH-HHHHHHHHTTSSCH----HH
T ss_pred HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHH-----hh-HHHHHHHHhcCCcH----HH
Confidence 8888889999999999876532 4567889999999987544332221 11 36677777655432 12
Q ss_pred hhhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcc
Q 048744 155 FEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPV 234 (312)
Q Consensus 155 ~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPl 234 (312)
....+..|+|++..+..+..++.. .|.+..|+..+.+++..-+.-++.+|.|++-..+.+...++. ...+|.|
T Consensus 268 ~~~a~~aL~~l~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~--~g~l~~L---- 340 (529)
T 3tpo_A 268 LADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID--AGALAVF---- 340 (529)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTGGGGH----
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHh-ccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhh--cccHHHH----
Confidence 445778999999988776554432 257788888778888888889999999998766655323332 2333333
Q ss_pred cCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhccc
Q 048744 235 AGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLVHG 300 (312)
Q Consensus 235 aG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vlr~ 300 (312)
+++ +. . +++.||...+-+|-.||+ +...+..+.+.|+.+.|-.
T Consensus 341 -----------------~~L-L~---~--~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~ 384 (529)
T 3tpo_A 341 -----------------PSL-LT---N--PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 384 (529)
T ss_dssp -----------------HHH-TT---C--SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred -----------------HHH-Hc---C--CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHH
Confidence 221 21 1 278899999999999987 6677788888888775433
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.34 E-value=4.9e-11 Score=117.73 Aligned_cols=251 Identities=16% Similarity=0.142 Sum_probs=185.3
Q ss_pred hHHHHHhccCCC-CHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744 4 ELEELLGFLCSP-SPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA 79 (312)
Q Consensus 4 ~l~ELv~FL~~~-~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~ 79 (312)
.++.|+++|.++ +++||..|+..|..++.. .+.+..+... ++++.|+.++.+. ..+...|+.+|-|++.+ +..+
T Consensus 131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~--g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA--DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT--TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 478899999987 999999999999999875 4555555543 6899999999877 88999999999999976 6778
Q ss_pred HHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc-cchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhH
Q 048744 80 GKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD-YGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHV 158 (312)
Q Consensus 80 ~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~-~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~l 158 (312)
..++..|+++.++..+.+++......++..|+||++.. ........ .+ .++.|+.++..++ ..-....
T Consensus 209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~------~~-~l~~L~~lL~~~d----~~v~~~a 277 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV------SQ-ALPTLAKLIYSMD----TETLVDA 277 (530)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHH------GG-GHHHHHHHTTCCC----HHHHHHH
T ss_pred HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHH------Hh-HHHHHHHHHcCCC----HHHHHHH
Confidence 88888899999999999977788889999999999876 32222111 11 4677888775442 1224557
Q ss_pred HHHHHhhcCC-hhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCC
Q 048744 159 GSILVNISKK-EAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGN 237 (312)
Q Consensus 159 a~vl~NlS~~-~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ 237 (312)
+.+|.|++.. ++.+..+++. +.+..|+..+.+++..-|..++.+|.|+|...+.....++. ..++|.|+
T Consensus 278 ~~~L~~L~~~~~~~~~~~~~~--~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~------ 347 (530)
T 1wa5_B 278 CWAISYLSDGPQEAIQAVIDV--RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN--AGVLPALR------ 347 (530)
T ss_dssp HHHHHHHHSSCHHHHHHHHHT--TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHH------
T ss_pred HHHHHHHhCCCHHHHHHHHhc--CcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHH--cchHHHHH------
Confidence 8999999975 5667777764 47888888877788888899999999999876655322322 24555442
Q ss_pred CCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhc
Q 048744 238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLV 298 (312)
Q Consensus 238 ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vl 298 (312)
+ .+.. +++.+|...+.+|-.|+. +...++.+-+.|+.+.|
T Consensus 348 ---------------~-lL~~-----~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L 388 (530)
T 1wa5_B 348 ---------------L-LLSS-----PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 388 (530)
T ss_dssp ---------------H-HTTC-----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred ---------------H-HHcC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 2 1211 168899999999999985 45555555556665544
No 21
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.34 E-value=6.8e-11 Score=117.14 Aligned_cols=262 Identities=15% Similarity=0.150 Sum_probs=188.4
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcC-CC-ccchhhhhhcccchHHHHHHhhccC--ccchhhHHHHHHhcC-CChhH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLT-GS-EDGLQSLSKYSKIALPSLARLLSEN--KEVSEPATEALVNLS-QNSEL 78 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls-~~-~~~~~~i~~~~~~~i~~L~~L~~d~--~~~~~~Al~~LiNLS-~d~~~ 78 (312)
.++|+|.-|.+.+++++..|+..+..+. .. .+.++.|.+. ++||.|+.+++.. +.+...|+.+|-|++ .+++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~--G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRA--GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHT--THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC--CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 4899999999999999999999988753 32 3345566553 7999999998644 678889999999995 57788
Q ss_pred HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHH-HhhhhhhhhhhhhHHHHHHHHhcCCCCCCC-Cchh
Q 048744 79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISS-LLQVEDEQIQGLYVMKLVRSFCRSSSEASD-DPFE 156 (312)
Q Consensus 79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~-ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~-~~~~ 156 (312)
...+++.|+|+.++..+.+++......|+..|.||+........ +++.+ .+..|+.++......... ....
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G-------~i~~Ll~lL~~~~~~~~~~~~~~ 208 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHG-------AIDPLLALLAVPDLSTLACGYLR 208 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-------CHHHHHHHTCSSCGGGSCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcC-------ChHHHHHHHHhccchhhhHHHHH
Confidence 88999999999999999999999999999999999987644443 33322 377888888765432211 1234
Q ss_pred hHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccC
Q 048744 157 HVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAG 236 (312)
Q Consensus 157 ~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG 236 (312)
.++..++|+++....+..+... .+.+..|+..+.+.+..-+..++.+|.|+|.....+. ..+. +..++|.|.
T Consensus 209 ~a~~~L~nl~~~~~~~~~~~~~-~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~-~~i~-~~g~i~~Lv----- 280 (510)
T 3ul1_B 209 NLTWTLSNLCRNKNPAPPLDAV-EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI-EMVV-KKGVVPQLV----- 280 (510)
T ss_dssp HHHHHHHHHHCCCSSCCCHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH-HHHH-TTTCHHHHH-----
T ss_pred HHHHHHHHHhhcccchhHHHHH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhH-HHHH-hcccchhhh-----
Confidence 5678888888766544433221 1355556666677777788889999999998776663 2332 223444442
Q ss_pred CCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhccccccC
Q 048744 237 NKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLVHGSGTE 304 (312)
Q Consensus 237 ~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vlr~~~~~ 304 (312)
+ .+. . +++.++...+.+|-.+++ +...+..+.+.|+.+.|-..-.+
T Consensus 281 ----------------~-lL~---~--~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~ 327 (510)
T 3ul1_B 281 ----------------K-LLG---A--TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN 327 (510)
T ss_dssp ----------------H-HHT---C--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC
T ss_pred ----------------h-hhc---C--CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC
Confidence 2 121 1 268899999999999865 45667788888988877765543
No 22
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.34 E-value=4.5e-11 Score=125.06 Aligned_cols=257 Identities=12% Similarity=0.071 Sum_probs=186.3
Q ss_pred HHHHHhccCCC--CHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCCh-----
Q 048744 5 LEELLGFLCSP--SPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNS----- 76 (312)
Q Consensus 5 l~ELv~FL~~~--~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~----- 76 (312)
++-++.||+++ ++++|+.|++.|.-+|..++.++.+.... ++|+.|+.+++.. ..+...|+.+|.||+.+.
T Consensus 379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~-g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~ 457 (810)
T 3now_A 379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDK-ASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM 457 (810)
T ss_dssp HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHcc-chHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhh
Confidence 44588889987 89999999999999999999998887643 7999999999876 889999999999999742
Q ss_pred -------------------------hHH---HHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhh
Q 048744 77 -------------------------ELA---GKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVED 128 (312)
Q Consensus 77 -------------------------~~~---~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~ 128 (312)
.+. +.+++.|+|+.++..+.++++.....|+..|.||+..+++...+++.+.
T Consensus 458 ~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Ga 537 (810)
T 3now_A 458 LPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGG 537 (810)
T ss_dssp CCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred hHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 233 6778889999999999999999999999999999988776666655431
Q ss_pred h---------h---hhhh-------------------------hHHHHHHHHhcCCCCCCCCch--hhHHHHHHhhcCCh
Q 048744 129 E---------Q---IQGL-------------------------YVMKLVRSFCRSSSEASDDPF--EHVGSILVNISKKE 169 (312)
Q Consensus 129 e---------~---~~~~-------------------------~l~~Ll~~f~~~~~~~~~~~~--~~la~vl~NlS~~~ 169 (312)
- + .... .+++|++++..+ .... ......|.||+..+
T Consensus 538 ip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~-----~~~l~~~eAl~AL~NLa~~~ 612 (810)
T 3now_A 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD-----CTALENFESLMALTNLASMN 612 (810)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT-----SCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC-----CcHHHHHHHHHHHHHHhcCC
Confidence 0 0 0000 133444443211 0111 12467899999985
Q ss_pred -hhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCCCCChhhhccC
Q 048744 170 -AGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKI 248 (312)
Q Consensus 170 -~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee~~~ee~~~l 248 (312)
+.|..+++. |.+..|+..+.|++..-|+-++.+|.|.+.+.+... .+. .+.+.+|.|+..+..
T Consensus 613 d~~~~~Ii~a--G~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~-~~v-~~~g~l~~Lv~LL~s------------ 676 (810)
T 3now_A 613 ESVRQRIIKE--QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK-MFE-GNNDRVKFLALLCED------------ 676 (810)
T ss_dssp HHHHHHHHHT--THHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH-HHH-SSSSHHHHHHHGGGC------------
T ss_pred HHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH-HHH-hccCcHHHHHHHhcC------------
Confidence 678888875 467888877677777778999999999999877652 333 333455544332221
Q ss_pred cHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHh-CCcchhc
Q 048744 249 PLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWS-VNGPRLV 298 (312)
Q Consensus 249 p~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~-~~vy~vl 298 (312)
+|..+|...+-||-.|++ +....+.+-+ .|+.+.|
T Consensus 677 ---------------~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~L 713 (810)
T 3now_A 677 ---------------EDEETATACAGALAIITSVSVKCCEKILAIASWLDIL 713 (810)
T ss_dssp ---------------SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHH
T ss_pred ---------------CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHH
Confidence 267888888999999988 6665554444 5555533
No 23
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.32 E-value=4.1e-11 Score=117.98 Aligned_cols=253 Identities=16% Similarity=0.139 Sum_probs=186.9
Q ss_pred hHHHHHhccCCCC-HHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744 4 ELEELLGFLCSPS-PSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA 79 (312)
Q Consensus 4 ~l~ELv~FL~~~~-~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~ 79 (312)
.++.|+++|++++ +++|..|+..|..++.. .+.+..+... ++++.|+.++.+. ..+...|+.+|-|++.+ +..+
T Consensus 118 ~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 118 VVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDH--GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp CHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhC--CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 4788999999876 99999999999998875 6677666653 6899999999887 88999999999999966 6678
Q ss_pred HHhhhhhHHHHHHHHH-cCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhH
Q 048744 80 GKMVQMGMIKTAMDLL-YKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHV 158 (312)
Q Consensus 80 ~~l~~~~~i~~lv~~i-~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~l 158 (312)
..+.+.|+++.++..+ .+++......++..|+||+........... .+ .++.|+.++..++. .-....
T Consensus 196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~------~~-~l~~L~~lL~~~~~----~v~~~a 264 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT------RP-ALPALARLIHSNDE----EVLTDA 264 (528)
T ss_dssp HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH------TT-HHHHHHHHTTCCCH----HHHHHH
T ss_pred HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH------HH-HHHHHHHHHCCCCH----HHHHHH
Confidence 8888889999999999 556677888999999999988633322111 11 46777777754421 124557
Q ss_pred HHHHHhhcCChhhh-hhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCC
Q 048744 159 GSILVNISKKEAGR-KILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGN 237 (312)
Q Consensus 159 a~vl~NlS~~~~gR-~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ 237 (312)
..+|.|++..+..+ +.+++. |.+..|+..+.+++..-|..++.+|.|+|...+.....++. ..++|.|+
T Consensus 265 ~~aL~~l~~~~~~~~~~~~~~--g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~~~l~~L~------ 334 (528)
T 4b8j_A 265 CWALSYLSDGTNDKIQAVIEA--GVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID--HQALPCLL------ 334 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHT--TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT--TTHHHHHH------
T ss_pred HHHHHHHHcCCHHHHHHHHHc--CHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH--hhhHHHHH------
Confidence 78999999887776 455554 47888888777777778899999999999866555323332 34555542
Q ss_pred CCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhcc
Q 048744 238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLVH 299 (312)
Q Consensus 238 ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vlr 299 (312)
+ .+... .++.+|...+-+|-.||. +......+...|+.+.|-
T Consensus 335 ---------------~-lL~~~----~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~ 377 (528)
T 4b8j_A 335 ---------------S-LLTQN----LKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLV 377 (528)
T ss_dssp ---------------H-HHHSC----CCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHH
T ss_pred ---------------H-HHcCC----CcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
Confidence 2 12210 168899999999999986 555666777767766443
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.31 E-value=6.1e-11 Score=116.76 Aligned_cols=255 Identities=15% Similarity=0.153 Sum_probs=186.3
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhc-CCCc-cchhhhhhcccchHHHHHHhhccC--ccchhhHHHHHHhcCCC-hhH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGL-TGSE-DGLQSLSKYSKIALPSLARLLSEN--KEVSEPATEALVNLSQN-SEL 78 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgl-s~~~-~~~~~i~~~~~~~i~~L~~L~~d~--~~~~~~Al~~LiNLS~d-~~~ 78 (312)
.+++|+++|.++++++|..|+..+..+ ++.. +++..+... ++++.|+.++.+. +.+...|+.+|-|++.+ +..
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~--g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQS--GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHT--TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC--CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 489999999999999999999999887 3333 555556543 6899999999765 67889999999999986 788
Q ss_pred HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchH-HHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhh
Q 048744 79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGIS-SLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEH 157 (312)
Q Consensus 79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~-~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~ 157 (312)
...+++.|+|+.++..+.+++......|+..|.||+....... .+++. | .+..|+.++.... ...-...
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~------g-~l~~Ll~lL~~~~---~~~v~~~ 222 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLAN------G-ALLPLLAQLNEHT---KLSMLRN 222 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHT------T-CHHHHHHTCCTTC---CHHHHHH
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHC------C-cHHHHHHHHhcCC---CHHHHHH
Confidence 8888888999999999999888899999999999997654333 33332 1 4778888874432 1123566
Q ss_pred HHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCC
Q 048744 158 VGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGN 237 (312)
Q Consensus 158 la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ 237 (312)
.+.+|.|++.....+..... .+.+..|+..+.+.+..-|..++.+|.|+|...+.....++. ..++|.|+--
T Consensus 223 a~~~L~~L~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~--~g~v~~Lv~l---- 294 (528)
T 4b8j_A 223 ATWTLSNFCRGKPQPSFEQT--RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVEL---- 294 (528)
T ss_dssp HHHHHHHHHCSSSCCCHHHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH--TTCHHHHHHH----
T ss_pred HHHHHHHHHcCCCCCcHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--cCHHHHHHHH----
Confidence 78999999988543333332 246777777777778888899999999999765554212222 2344444221
Q ss_pred CCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhcccc
Q 048744 238 KVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLVHGS 301 (312)
Q Consensus 238 ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vlr~~ 301 (312)
+.. +++.++...+.+|-.||+ +...++.+...|+.+.|-..
T Consensus 295 ------------------L~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 336 (528)
T 4b8j_A 295 ------------------LLH-----PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSL 336 (528)
T ss_dssp ------------------TTC-----SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH
T ss_pred ------------------HcC-----CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHH
Confidence 211 157889999999999987 56677777777777755443
No 25
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.30 E-value=2.8e-11 Score=126.16 Aligned_cols=248 Identities=15% Similarity=0.084 Sum_probs=185.6
Q ss_pred chHHHHHhccCC-CCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744 3 NELEELLGFLCS-PSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA 79 (312)
Q Consensus 3 ~~l~ELv~FL~~-~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~ 79 (312)
..++.|+.+|++ .++++|..|+..|..++...+++..|... ++|+.|+.++.+. ..+...|+.+|.||+.+ +...
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~--g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKS--GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 357889999984 59999999999999999998888888764 7899999999888 88999999999999965 5667
Q ss_pred HHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCC-ccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhH
Q 048744 80 GKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQL-DYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHV 158 (312)
Q Consensus 80 ~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~-~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~l 158 (312)
..+.+.|+|+.++..+.+++......++..|.||+.. +++...+.+.+ .+..|+.++-.+... ....+.
T Consensus 270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~-------~i~~Lv~lL~~~~~~---~~~~~a 339 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG-------GPQALVNIMRTYTYE---KLLWTT 339 (780)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTT-------HHHHHHHHHTTCCCH---HHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC-------CHHHHHHHHhcCCHH---HHHHHH
Confidence 7777789999999999988777778888999999964 45555444421 367888877554321 223456
Q ss_pred HHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCC
Q 048744 159 GSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNK 238 (312)
Q Consensus 159 a~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~e 238 (312)
+.++.|++..++.|..+++.+ .+..|+..+.+.+..-++.++++++|+|-...... ....++|
T Consensus 340 ~~aL~~Ls~~~~~~~~i~~~g--~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~-----~~~~~i~---------- 402 (780)
T 2z6g_A 340 SRVLKVLSVCSSNKPAIVEAG--GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE-----GMEGLLG---------- 402 (780)
T ss_dssp HHHHHHHHTSTTHHHHHHHTT--HHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS-----CCHHHHH----------
T ss_pred HHHHHHhhcChHHHHHHHHhc--hHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh-----hhhhHHH----------
Confidence 899999999999999998864 77888887776666667778999999996542210 0011222
Q ss_pred CCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcC-HhHHHHHHhCCcch
Q 048744 239 VYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQ-EAGLRAFWSVNGPR 296 (312)
Q Consensus 239 e~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t-~~gR~~lr~~~vy~ 296 (312)
.-+++ +. . +++.+|...+.+|..|+.. ...++.+.+.|+.+
T Consensus 403 -----------~Lv~l-L~---~--~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~ 444 (780)
T 2z6g_A 403 -----------TLVQL-LG---S--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 444 (780)
T ss_dssp -----------HHHHH-TT---C--SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHH
T ss_pred -----------HHHHH-Hc---C--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence 22331 21 1 2789999999999999875 35677777666554
No 26
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.28 E-value=1.1e-10 Score=115.91 Aligned_cols=254 Identities=17% Similarity=0.108 Sum_probs=185.8
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-c-----cchhhHHHHHHhcCCCh
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-K-----EVSEPATEALVNLSQNS 76 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~-----~~~~~Al~~LiNLS~d~ 76 (312)
.++-|+.+|.+++++||..|+..|..+++. ++.+..+... ++++.|+.++... . ...+.|..+|-|++.+.
T Consensus 163 aip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~--g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 163 AIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKH--GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHc--CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 578899999999999999999999999986 6677777654 6899999998764 2 23567889999998764
Q ss_pred hHHHHhhh-hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCch
Q 048744 77 ELAGKMVQ-MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPF 155 (312)
Q Consensus 77 ~~~~~l~~-~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~ 155 (312)
.-...+.. .++++.|+..+.++++.....+|..|+|++........++.. .| .++.|++++..+.. .-.
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~-----~g-~i~~Lv~lL~~~~~----~v~ 310 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK-----KG-VVPQLVKLLGATEL----PIV 310 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT-----TT-CHHHHHHHHTCSCH----HHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh-----cc-chHHHHHHhcCCCh----hHH
Confidence 33333333 488999999999988888889999999999887654443221 12 47788888865532 123
Q ss_pred hhHHHHHHhhcC-ChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcc
Q 048744 156 EHVGSILVNISK-KEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPV 234 (312)
Q Consensus 156 ~~la~vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPl 234 (312)
...+.++.|++. .++.+..+++.+ .+..|+..+.+++..-|..++.+|.|+|.....|...+. +.+++|.++--+
T Consensus 311 ~~a~~aL~nl~~~~~~~~~~i~~~g--~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~--~~g~i~~Lv~lL 386 (529)
T 3tpo_A 311 TPALRAIGNIVTGTDEQTQKVIDAG--ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV--NHGLVPFLVGVL 386 (529)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTT--GGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHH--HTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHhhcc--cHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHH--hcCcHHHHHHHh
Confidence 456788999876 456677777654 666666666777777778899999999998888753232 234555542211
Q ss_pred cCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc--CHhHHHHHHhCCcchhccc
Q 048744 235 AGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL--QEAGLRAFWSVNGPRLVHG 300 (312)
Q Consensus 235 aG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~--t~~gR~~lr~~~vy~vlr~ 300 (312)
+ . .++++|...+-||..||. +.+-+.+|.+.|+.+.|-+
T Consensus 387 ------------------~-------~--~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~ 427 (529)
T 3tpo_A 387 ------------------S-------K--ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 427 (529)
T ss_dssp ------------------H-------S--SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred ------------------c-------C--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHH
Confidence 1 1 278899999999999875 6777888999998875544
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.28 E-value=2.8e-10 Score=108.39 Aligned_cols=251 Identities=18% Similarity=0.154 Sum_probs=183.5
Q ss_pred chHHHHHhccCCC-CHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhH
Q 048744 3 NELEELLGFLCSP-SPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SEL 78 (312)
Q Consensus 3 ~~l~ELv~FL~~~-~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~ 78 (312)
.-++.|+++|+++ ++++|..|+..|..++.. .+....+... ++++.|+.++.++ +.+...|+.+|-|++.+ +..
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQA--GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHH
Confidence 3478899999987 999999999999998764 4555555442 6899999999887 88999999999999976 567
Q ss_pred HHHhhhhhHHHHHHHHHcC-CCChhHHHHHHHHHhhcCCc-cchH-HHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCch
Q 048744 79 AGKMVQMGMIKTAMDLLYK-PDSSITRLLVMLLVNLTQLD-YGIS-SLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPF 155 (312)
Q Consensus 79 ~~~l~~~~~i~~lv~~i~~-~~~~~ad~a~mLLsNLT~~~-~~~~-~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~ 155 (312)
+..+++.|+++.++..+.+ ++......++..|+|+++.. .... .+. .+ .++.|++.+..++. .-.
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-------~~-~l~~L~~~l~~~~~----~v~ 209 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-------SP-CLNVLSWLLFVSDT----DVL 209 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-------GG-GHHHHHHHTTCCCH----HHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-------HH-HHHHHHHHHccCCH----HHH
Confidence 7888888999999999985 66788889999999999875 2111 111 11 46778877754321 224
Q ss_pred hhHHHHHHhhcCC-hhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcc
Q 048744 156 EHVGSILVNISKK-EAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPV 234 (312)
Q Consensus 156 ~~la~vl~NlS~~-~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPl 234 (312)
...+.+|.|++.. ++.+..+... +.+..++..+.+++..-|..++.+|.|+|...+.....++. ..++|.|
T Consensus 210 ~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L---- 281 (450)
T 2jdq_A 210 ADACWALSYLSDGPNDKIQAVIDA--GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN--CSALQSL---- 281 (450)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHT--TTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT--TTHHHHH----
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHc--CcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH--CccHHHH----
Confidence 5677899999985 4566666654 46778887777788888999999999999876554322222 1344443
Q ss_pred cCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc-CHhHHHHHHhCCcchhc
Q 048744 235 AGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL-QEAGLRAFWSVNGPRLV 298 (312)
Q Consensus 235 aG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~-t~~gR~~lr~~~vy~vl 298 (312)
++ .+.. +++.+|...+.+|-.|+. +...++.+.+.|+.+.|
T Consensus 282 -----------------~~-ll~~-----~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 323 (450)
T 2jdq_A 282 -----------------LH-LLSS-----PKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323 (450)
T ss_dssp -----------------HH-HTTC-----SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred -----------------HH-HHcC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 22 1221 268899999999999986 66677766666666644
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.27 E-value=1.2e-10 Score=111.10 Aligned_cols=252 Identities=19% Similarity=0.182 Sum_probs=181.7
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCc-cchhhhhhcccchHHHHHHhhcc-C-ccchhhHHHHHHhcCCC--hhH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSE-DGLQSLSKYSKIALPSLARLLSE-N-KEVSEPATEALVNLSQN--SEL 78 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~-~~~~~i~~~~~~~i~~L~~L~~d-~-~~~~~~Al~~LiNLS~d--~~~ 78 (312)
-++-|+++|++++++||..|+..|..++... +.+..+... ++++.|+.++.+ . ..+...|+.+|.|++.+ +..
T Consensus 108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDC--NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--TCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHC--CCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 4788999999999999999999999998774 566666543 689999999985 4 78899999999999965 332
Q ss_pred HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccc-hHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhh
Q 048744 79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYG-ISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEH 157 (312)
Q Consensus 79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~-~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~ 157 (312)
...+. .++++.++..+.++++.....++..|+||+..... ...+... + .++.|++++..++. .-...
T Consensus 186 ~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~-~i~~L~~ll~~~~~----~v~~~ 253 (450)
T 2jdq_A 186 EFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDA------G-VCRRLVELLMHNDY----KVVSP 253 (450)
T ss_dssp CGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHT------T-THHHHHHHTTCSCH----HHHHH
T ss_pred CHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHc------C-cHHHHHHHHCCCch----hHHHH
Confidence 22333 58899999999988888889999999999987532 2222221 1 47788888754321 12355
Q ss_pred HHHHHHhhcCChh-hhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccC
Q 048744 158 VGSILVNISKKEA-GRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAG 236 (312)
Q Consensus 158 la~vl~NlS~~~~-gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG 236 (312)
.+..|.|++.... .++.+++. |.+..++..+.+++..-|..++.+|.|+|.....+...++. .+++|.++
T Consensus 254 a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~----- 324 (450)
T 2jdq_A 254 ALRAVGNIVTGDDIQTQVILNC--SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID--ANIFPALI----- 324 (450)
T ss_dssp HHHHHHHHTTSCHHHHHHHHTT--THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHH-----
T ss_pred HHHHHHHHhhCChHHHHHHHHC--ccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHH-----
Confidence 6789999987644 45566665 47888888877777888889999999999765555323332 24555542
Q ss_pred CCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc--CHhHHHHHHhCCcchhccc
Q 048744 237 NKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL--QEAGLRAFWSVNGPRLVHG 300 (312)
Q Consensus 237 ~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~--t~~gR~~lr~~~vy~vlr~ 300 (312)
+. +.. +++++|...+.+|-.||. +....+++.+.|+.+.|-+
T Consensus 325 ----------------~~-l~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ 368 (450)
T 2jdq_A 325 ----------------SI-LQT-----AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCD 368 (450)
T ss_dssp ----------------HH-HHH-----SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHH
T ss_pred ----------------HH-Hhc-----CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH
Confidence 21 211 278999999999999986 5566676767666664443
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.27 E-value=7.5e-11 Score=114.94 Aligned_cols=212 Identities=17% Similarity=0.134 Sum_probs=162.6
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhcc--CccchhhHHHHHHhcCCChhHHHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSE--NKEVSEPATEALVNLSQNSELAGK 81 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d--~~~~~~~Al~~LiNLS~d~~~~~~ 81 (312)
.++.|+.+|+++++++|..|+..|..++...+++..++... +.++.|+.++.. ...+...|+.+|-|||.++..+..
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~-~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 96 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP-QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCc-chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH
Confidence 48899999999999999999999999999888887777543 689999998853 367889999999999999999999
Q ss_pred hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHH-HhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHH
Q 048744 82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISS-LLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGS 160 (312)
Q Consensus 82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~-ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~ 160 (312)
+++.|.|+.++..+.++++.....++..|.||+..+..... +.+. | .++.|++++..+.. .-....+.
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~------g-~i~~L~~ll~~~~~----~~~~~~~~ 165 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA------G-GLQKMVALLNKTNV----KFLAITTD 165 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHH------T-HHHHHHHGGGCCCH----HHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHc------C-CHHHHHHHHhcCCH----HHHHHHHH
Confidence 99999999999999998888889999999999987544333 2222 1 47788888865421 11233456
Q ss_pred HHHhhcC-Chhhhhhhcccccchhhhhhhccc-CCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhh
Q 048744 161 ILVNISK-KEAGRKILLDPKRGLLKQIVRQFD-SSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLL 232 (312)
Q Consensus 161 vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~-~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLl 232 (312)
+|.|++. .+++|..+.+.+ .+..++..+. .....++..++.+++|+|.+.+... .+.. ...+|.++-
T Consensus 166 ~L~~la~~~~~~~~~i~~~~--~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~--~g~~~~L~~ 234 (529)
T 1jdh_A 166 CLQILAYGNQESKLIILASG--GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP-AIVE--AGGMQALGL 234 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHTT--HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHH-HHHH--TTHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHCC--CHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHH-HHHH--CCCHHHHHH
Confidence 8999987 489999888764 4555555443 3556788899999999998766542 3433 245665543
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.23 E-value=8.3e-11 Score=116.11 Aligned_cols=253 Identities=18% Similarity=0.156 Sum_probs=183.6
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCCh-hHHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNS-ELAG 80 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~-~~~~ 80 (312)
.++-|+.+|++++++||..|+..|..++.. ++.+..+... ++++.|+.++.+. ..+...|+.+|.||+.+. ....
T Consensus 174 ~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 174 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQC--NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp CHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHc--CcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 478899999999999999999999999877 5566666553 6899999999887 788999999999999653 2233
Q ss_pred HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCcc-chHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744 81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDY-GISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG 159 (312)
Q Consensus 81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~-~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la 159 (312)
.....++++.++..+.++++.....++..|+||+.... .+..+++. + .++.|+.++..+.. .-.....
T Consensus 252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~------~-~v~~Lv~lL~~~~~----~v~~~a~ 320 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDV------R-IPKRLVELLSHEST----LVQTPAL 320 (530)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHT------T-CHHHHHHGGGCSCH----HHHHHHH
T ss_pred HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhc------C-cHHHHHHHHCCCCh----hhHHHHH
Confidence 44446899999999999888888899999999997653 23333321 1 36788888764421 1234567
Q ss_pred HHHHhhcCC-hhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCC
Q 048744 160 SILVNISKK-EAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNK 238 (312)
Q Consensus 160 ~vl~NlS~~-~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~e 238 (312)
.++.|++.. +..++.+++. +.+..++..+.+++..-|..++.+|.|+|.....+...++. .+++|.|+
T Consensus 321 ~~L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~--~~~l~~L~------- 389 (530)
T 1wa5_B 321 RAVGNIVTGNDLQTQVVINA--GVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID--ANLIPPLV------- 389 (530)
T ss_dssp HHHHHHTTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTCHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHc--chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHH-------
Confidence 899999864 6666777665 47888888777777778889999999999865555323332 34445442
Q ss_pred CCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcC--H--hHHHHHHhCCcchhccc
Q 048744 239 VYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQ--E--AGLRAFWSVNGPRLVHG 300 (312)
Q Consensus 239 e~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t--~--~gR~~lr~~~vy~vlr~ 300 (312)
+. +.. +++.+|...+.+|-.||.. . ...+++.+.|+.+.|-.
T Consensus 390 --------------~l-L~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ 435 (530)
T 1wa5_B 390 --------------KL-LEV-----AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCD 435 (530)
T ss_dssp --------------HH-HHH-----SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHH
T ss_pred --------------HH-Hhc-----CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHH
Confidence 21 211 2789999999999999863 3 45566667676664433
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.23 E-value=2.2e-10 Score=116.22 Aligned_cols=210 Identities=17% Similarity=0.139 Sum_probs=162.4
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC--ccchhhHHHHHHhcCCChhHHHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN--KEVSEPATEALVNLSQNSELAGK 81 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~--~~~~~~Al~~LiNLS~d~~~~~~ 81 (312)
.++.|+++|+++++.||..|+..|..++...+++..++... ++++.|+.++... ..+...|+.+|.|||.++..+..
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~-~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 93 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP-QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 93 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCH-HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhcc-ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence 48899999999999999999999999998888877776543 6899999998653 67889999999999999989999
Q ss_pred hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHH-HhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchh-hHH
Q 048744 82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISS-LLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFE-HVG 159 (312)
Q Consensus 82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~-ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~-~la 159 (312)
+.+.|.|+.++..+.++++.....++..|.||+........ +.+. | .++.|++++..+.. ... ..+
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~------g-~i~~Lv~lL~~~~~-----~~~~~a~ 161 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA------G-GLQKMVALLNKTNV-----KFLAITT 161 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHT------T-HHHHHHHGGGCCCH-----HHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHC------C-ChHHHHHHHCcCCH-----HHHHHHH
Confidence 99999999999999998888889999999999987543333 3232 1 37788888866521 222 234
Q ss_pred HHHHhhcC-ChhhhhhhcccccchhhhhhhcccC-CchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhh
Q 048744 160 SILVNISK-KEAGRKILLDPKRGLLKQIVRQFDS-SNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALL 231 (312)
Q Consensus 160 ~vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~~-~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lL 231 (312)
.+|.|++. .+++|..+.+.+ .+..|+..+.+ .....++.++.+++|+|++..... .++. ...+|.|+
T Consensus 162 ~~L~~La~~~~~~~~~i~~~g--~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~-~l~~--~g~l~~L~ 230 (644)
T 2z6h_A 162 DCLQILAYGNQESKLIILASG--GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP-AIVE--AGGMQALG 230 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT--HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHH-HHHH--TTHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHcC--ChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHH-HHHH--CCCHHHHH
Confidence 58999996 899999998764 56666665543 345677899999999999766652 4443 24555543
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.18 E-value=7.7e-10 Score=95.29 Aligned_cols=194 Identities=16% Similarity=0.189 Sum_probs=146.6
Q ss_pred chHHHHHHhhccC-ccchhhHHHHHHhcC-CChhHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc-cchHH
Q 048744 46 IALPSLARLLSEN-KEVSEPATEALVNLS-QNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD-YGISS 122 (312)
Q Consensus 46 ~~i~~L~~L~~d~-~~~~~~Al~~LiNLS-~d~~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~-~~~~~ 122 (312)
+..+.|+.++.+. ..+...|+.+|-|++ .++.....+.+.|+|+.++..+.++++.....++..|.|++..+ .....
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 5678999999887 889999999999999 57888888999999999999999998889999999999999654 44444
Q ss_pred HhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcC-ChhhhhhhcccccchhhhhhhcccCCchhhHhhH
Q 048744 123 LLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISK-KEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGV 201 (312)
Q Consensus 123 ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gv 201 (312)
+++.+ .++.|++++..++. .-....+.++.|++. .++.++.+++. |.+..|+..+.+++..-|..+
T Consensus 92 i~~~g-------~i~~L~~lL~~~~~----~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a 158 (210)
T 4db6_A 92 VIDAG-------ALPALVQLLSSPNE----QILQEALWALSNIASGGNEQIQAVIDA--GALPALVQLLSSPNEQILQEA 158 (210)
T ss_dssp HHHTT-------CHHHHHHHTTCSCH----HHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHH
T ss_pred HHHCC-------CHHHHHHHHcCCcH----HHHHHHHHHHHHHHcCCHHHHHHHHHc--CcHHHHHHHHcCCCHHHHHHH
Confidence 44422 37888888866632 124567899999995 55666677765 478888888787888889999
Q ss_pred HHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhc
Q 048744 202 SGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITL 281 (312)
Q Consensus 202 a~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~ 281 (312)
+.+|.|+|...+... ..+. +...+|.|. ++ +. . +++.+|...+.+|-.||+
T Consensus 159 ~~aL~~l~~~~~~~~-~~~~-~~g~i~~L~---------------------~l-l~---~--~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 159 LWALSNIASGGNEQK-QAVK-EAGALEKLE---------------------QL-QS---H--ENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTSCHHHH-HHHH-HTTHHHHHH---------------------HG-GG---C--SCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCcHHH-HHHH-HCCCHHHHH---------------------HH-Hh---C--CCHHHHHHHHHHHHHHhc
Confidence 999999999855553 2222 123444432 21 21 1 289999999999999875
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.15 E-value=6.2e-10 Score=116.04 Aligned_cols=214 Identities=16% Similarity=0.145 Sum_probs=162.4
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhcc--CccchhhHHHHHHhcCCChhHHHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSE--NKEVSEPATEALVNLSQNSELAGK 81 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d--~~~~~~~Al~~LiNLS~d~~~~~~ 81 (312)
.++.|+.+|+++++.||..|+..|..++...+++..+...+ ++++.|+.++.. ...+...|+.+|-|||.++.....
T Consensus 151 ~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~-~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~ 229 (780)
T 2z6g_A 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP-QMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA 229 (780)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhcc-ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence 57899999999999999999999999998877777776543 689999998864 367899999999999999888888
Q ss_pred hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHh-hhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHH
Q 048744 82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLL-QVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGS 160 (312)
Q Consensus 82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll-~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~ 160 (312)
+++.|+|+.++..+.++++.....|+..|.||+.........+ +. | .+..|++++..+.. .-....+.
T Consensus 230 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~------g-~v~~Lv~lL~~~~~----~v~~~a~~ 298 (780)
T 2z6g_A 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLA------G-GLQKMVALLNKTNV----KFLAITTD 298 (780)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHT------T-HHHHHHHGGGCCCH----HHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHc------C-CHHHHHHHHhcCCH----HHHHHHHH
Confidence 8888999999999999888888999999999998754444333 22 1 37788888865321 11334567
Q ss_pred HHHhhcC-ChhhhhhhcccccchhhhhhhcccC-CchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcc
Q 048744 161 ILVNISK-KEAGRKILLDPKRGLLKQIVRQFDS-SNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPV 234 (312)
Q Consensus 161 vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~~-~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPl 234 (312)
++.|++. .+++|..+.+.+ .+..|+..+.. ....++..++++++|+|.+.... ..++. ...+|.|+--+
T Consensus 299 aL~~La~~~~e~~~~i~~~~--~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~-~~i~~--~g~l~~Ll~lL 369 (780)
T 2z6g_A 299 CLQILAYGNQESKLIILASG--GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVE--AGGMQALGLHL 369 (780)
T ss_dssp HHHHHHTTCHHHHHHHHTTT--HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHH-HHHHH--TTHHHHHGGGT
T ss_pred HHHHHhcCChHHHHHHHHcC--CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHH-HHHHH--hchHHHHHHHH
Confidence 8889885 689999998764 45555554443 45567788999999999876554 23433 24556554433
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.06 E-value=8.3e-10 Score=102.87 Aligned_cols=194 Identities=14% Similarity=0.230 Sum_probs=154.8
Q ss_pred chHHHHHhccCCCCH------------HHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHH-hhccC-ccchhhHHHH
Q 048744 3 NELEELLGFLCSPSP------------SVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLAR-LLSEN-KEVSEPATEA 68 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~------------~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~-L~~d~-~~~~~~Al~~ 68 (312)
+.+++.++.|.++.| +-|..|++.|..+..+.++...+.+. +.++.|+. ++..+ +.+...|+.+
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~--G~l~~Lv~~lL~s~~~~vr~~Aa~~ 105 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQL--SGMHLLVGRYLEAGAAGLRWRAAQL 105 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHT--THHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHc--CCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 458899999998632 57999999999999987777766654 57899999 98887 8899999999
Q ss_pred HHhcCCC-hhHHHHhhhhhHHHHHHHHHcC-CCChhHHHHHHHHHhhcCCccc-hHHHhhhhhhhhhhhhHHHHHHHHhc
Q 048744 69 LVNLSQN-SELAGKMVQMGMIKTAMDLLYK-PDSSITRLLVMLLVNLTQLDYG-ISSLLQVEDEQIQGLYVMKLVRSFCR 145 (312)
Q Consensus 69 LiNLS~d-~~~~~~l~~~~~i~~lv~~i~~-~~~~~ad~a~mLLsNLT~~~~~-~~~ll~~~~e~~~~~~l~~Ll~~f~~ 145 (312)
|-|++++ +..+..+++.|+++.|+..+.+ ++......|+-.|||+++.... ...+.+.+ .++.|+.++..
T Consensus 106 Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~g-------gi~~L~~lL~~ 178 (296)
T 1xqr_A 106 IGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLD-------GFSVLMRAMQQ 178 (296)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-------HHHHHHHHHHS
T ss_pred HHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC-------CHHHHHHHHcC
Confidence 9999865 7788889989999999999984 5667888999999999987643 34454421 37788888876
Q ss_pred CCCCCCCCchhhHHHHHHhhcC-ChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhcc
Q 048744 146 SSSEASDDPFEHVGSILVNISK-KEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFE 211 (312)
Q Consensus 146 ~~~~~~~~~~~~la~vl~NlS~-~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~ 211 (312)
++.. -....+.+++|++. .++.++.+++. |.++.|+..+.+++..-|.-++.+|.|++-+
T Consensus 179 ~d~~----v~~~A~~aLs~L~~~~~~~~~~vv~~--g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 179 QVQK----LKVKSAFLLQNLLVGHPEHKGTLCSM--GMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp SCHH----HHHHHHHHHHHHHHHCGGGHHHHHHT--THHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CCHH----HHHHHHHHHHHHHhCChHHHHHHHHc--CCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 5322 23457889999865 47788888876 4788888877877888899999999999976
No 35
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.89 E-value=1.2e-08 Score=91.93 Aligned_cols=205 Identities=15% Similarity=0.145 Sum_probs=143.4
Q ss_pred chHHHHHHhhccC-c--cchhhHHHHHHhcC-CChhHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC-Cccch
Q 048744 46 IALPSLARLLSEN-K--EVSEPATEALVNLS-QNSELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ-LDYGI 120 (312)
Q Consensus 46 ~~i~~L~~L~~d~-~--~~~~~Al~~LiNLS-~d~~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~-~~~~~ 120 (312)
-.++.|+.++..+ . .....|..+|-||+ .++..+..+.+.|.|+.|+..+.+++......|+..|.||+. ++++.
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 3588999998776 5 66778999999999 578889999999999999999999888899999999999998 46666
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCChhhhhhhcccccchhhh-h-hhcc--------
Q 048744 121 SSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQ-I-VRQF-------- 190 (312)
Q Consensus 121 ~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~-l-l~~~-------- 190 (312)
..+.+.+ .++.|++++..+.+ .......+.+|.|||..+++|..+.+..-..+-. + .|..
T Consensus 88 ~~I~~~G-------aI~~Lv~lL~~~~~---~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~ 157 (233)
T 3tt9_A 88 LEVAELN-------GVPRLLQVLKQTRD---LETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYP 157 (233)
T ss_dssp HHHHHTT-------HHHHHHHHHHHCCC---HHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCC
T ss_pred HHHHHcC-------CHHHHHHHHccCCC---HHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccc
Confidence 6666543 48899999975321 1234567889999999999999888643112222 2 1221
Q ss_pred ---cCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChH
Q 048744 191 ---DSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPE 267 (312)
Q Consensus 191 ---~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~ 267 (312)
.+.+..-++.++++|||++...+... ..+-....+.+.|+.++-+. ..+ .+ .|..
T Consensus 158 ~~~~~~~~~v~~na~~~L~nLss~~~~~R-~~~r~~~Gli~~Lv~~l~~~------------------~~~-~~--~~~k 215 (233)
T 3tt9_A 158 KANGLLDFDIFYNVTGCLRNMSSAGADGR-KAMRRCDGLIDSLVHYVRGT------------------IAD-YQ--PDDK 215 (233)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHTTSCHHHH-HHHHTSTTHHHHHHHHHHHH------------------HHT-TC--TTCH
T ss_pred cccccchHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCCcHHHHHHHHHhh------------------hhc-cc--chhH
Confidence 11245678899999999998654443 44544444555554433321 111 11 2566
Q ss_pred HHHHHHHHHHHHhcC
Q 048744 268 IRIQALESIYLITLQ 282 (312)
Q Consensus 268 Ir~~llE~Ll~L~~t 282 (312)
.+...+-+|..||-.
T Consensus 216 ~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 216 ATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhh
Confidence 677788888888753
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.85 E-value=6.4e-08 Score=90.08 Aligned_cols=159 Identities=18% Similarity=0.147 Sum_probs=124.0
Q ss_pred hHHHHHh-ccCCCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhcc-C-ccchhhHHHHHHhcCC-ChhH
Q 048744 4 ELEELLG-FLCSPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSE-N-KEVSEPATEALVNLSQ-NSEL 78 (312)
Q Consensus 4 ~l~ELv~-FL~~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d-~-~~~~~~Al~~LiNLS~-d~~~ 78 (312)
.++.|++ +|++++++||..|+..|-.++++ +..++.+.+. ++++.|+.++.. . ..+.+.|+.+|-|++. ++..
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~--g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~ 159 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL--GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAG 159 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC--CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHH
Confidence 4678999 99999999999999999998776 5566666654 689999999974 3 6789999999999986 4666
Q ss_pred HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc-cchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhh
Q 048744 79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD-YGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEH 157 (312)
Q Consensus 79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~-~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~ 157 (312)
.+.+.+.|.++.|+..+.+++......+|.+|+||+..+ +.+..+.+.+ .+..|++++..++. .-...
T Consensus 160 ~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g-------~i~~Lv~LL~~~d~----~v~~~ 228 (296)
T 1xqr_A 160 LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG-------MVQQLVALVRTEHS----PFHEH 228 (296)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT-------HHHHHHHHHTSCCS----THHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC-------CHHHHHHHHcCCCh----hHHHH
Confidence 677777899999999999998889999999999998764 3344444432 47899998876632 23466
Q ss_pred HHHHHHhhcCC-hhhhhhh
Q 048744 158 VGSILVNISKK-EAGRKIL 175 (312)
Q Consensus 158 la~vl~NlS~~-~~gR~~~ 175 (312)
.+..+.|+.+. +..+..+
T Consensus 229 al~aL~~l~~~~~~~~~~~ 247 (296)
T 1xqr_A 229 VLGALCSLVTDFPQGVREC 247 (296)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCChhHHHHH
Confidence 78889998776 4444433
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.7e-08 Score=104.76 Aligned_cols=205 Identities=19% Similarity=0.204 Sum_probs=143.3
Q ss_pred hHHHHHhccCCCCHH---HHHHHHHHHHhcCCCccchhhhhh-cc-cchHHHHHHhhccC--ccc-------------hh
Q 048744 4 ELEELLGFLCSPSPS---VKKAAVDIVRGLTGSEDGLQSLSK-YS-KIALPSLARLLSEN--KEV-------------SE 63 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~---vR~~Al~~llgls~~~~~~~~i~~-~~-~~~i~~L~~L~~d~--~~~-------------~~ 63 (312)
.++-|+++|.+.... +|..|+..|..++.+.++.. +|. .. -++|+.|+.|++.+ ... ..
T Consensus 499 al~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~f 577 (778)
T 3opb_A 499 AVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNY 577 (778)
T ss_dssp HHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHH
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHH
Confidence 478899999976544 89999999998886655443 342 11 26899999999832 211 56
Q ss_pred hHHHHHHhcCCCh-----hHHHHhhhh-hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccch-HHHhhhhhhhhhhhhH
Q 048744 64 PATEALVNLSQNS-----ELAGKMVQM-GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGI-SSLLQVEDEQIQGLYV 136 (312)
Q Consensus 64 ~Al~~LiNLS~d~-----~~~~~l~~~-~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~-~~ll~~~~e~~~~~~l 136 (312)
.|+.||.||+..+ +++..|++. |+++.+.+++.+++......|+.+++||+.+++++ .++++.......+ .+
T Consensus 578 eAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~-rL 656 (778)
T 3opb_A 578 EALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLR-NF 656 (778)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHH-HH
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhc-cH
Confidence 9999999999764 578889985 99999999999988888899999999999998875 4666543211111 26
Q ss_pred HHHHHHHhcCCCCCCCCchhhHHHHHHhhc-CChhhhhhhcccccchhhhhhhcccC--CchhhHhhHHHHHHhhh-ccc
Q 048744 137 MKLVRSFCRSSSEASDDPFEHVGSILVNIS-KKEAGRKILLDPKRGLLKQIVRQFDS--SNYLRKKGVSGTIRNCC-FEA 212 (312)
Q Consensus 137 ~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS-~~~~gR~~~l~~~~~~l~~ll~~~~~--~s~iRR~gva~~ikNcc-F~~ 212 (312)
..|+.+.-.++.+ .-...+.+|+|+| ..|...+.+++..+ .++.++..++. ++.--|.-++-++.|.. ...
T Consensus 657 ~lLV~Ll~s~D~~----~r~AAagALAnLts~~~~ia~~ll~~~~-gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 657 NILVKLLQLSDVE----SQRAVAAIFANIATTIPLIAKELLTKKE-LIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp HHHHHGGGCSCHH----HHHHHHHHHHHHHHHCHHHHHHHTTCHH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCHH----HHHHHHHHHHHhcCCChHHHHHHHHccc-cHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 6777777443322 2345789999995 79999999988743 45555554332 45555555666788887 443
Q ss_pred hhh
Q 048744 213 EHQ 215 (312)
Q Consensus 213 ~~H 215 (312)
..+
T Consensus 732 ~~~ 734 (778)
T 3opb_A 732 DNG 734 (778)
T ss_dssp STT
T ss_pred cCC
Confidence 333
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.6e-07 Score=97.37 Aligned_cols=192 Identities=15% Similarity=0.144 Sum_probs=140.4
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-cc---chhhHHHHHHhcC--CChh
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KE---VSEPATEALVNLS--QNSE 77 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~---~~~~Al~~LiNLS--~d~~ 77 (312)
.++-|+..++++.+.+|..|+..|..+|..+++|..+.+. ++++.|+.++..+ .. ....|+.+|-|++ .+|.
T Consensus 458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqq--Gal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~ 535 (778)
T 3opb_A 458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQ--GAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG 535 (778)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHT--THHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence 4778999999999999999999999999999999998875 7899999998777 33 5779999999996 4555
Q ss_pred HHHHhh--h-hhHHHHHHHHHcC-CCCh------------h-HHHHHHHHHhhcCCcc-----chHHHhhhhhhhhhhhh
Q 048744 78 LAGKMV--Q-MGMIKTAMDLLYK-PDSS------------I-TRLLVMLLVNLTQLDY-----GISSLLQVEDEQIQGLY 135 (312)
Q Consensus 78 ~~~~l~--~-~~~i~~lv~~i~~-~~~~------------~-ad~a~mLLsNLT~~~~-----~~~~ll~~~~e~~~~~~ 135 (312)
.. +. . .+.|+.|+..+.. +... . .-.|.|.|.||+..+. .+.+++.. .| +
T Consensus 536 ~~--f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~-----~g-a 607 (778)
T 3opb_A 536 LI--FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST-----KV-Y 607 (778)
T ss_dssp HH--SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS-----HH-H
T ss_pred HH--cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh-----cC-H
Confidence 42 21 1 2899999999872 3321 1 3378999999998862 23445442 12 4
Q ss_pred HHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCChhhh--hhhccccc---chhhhhhhcccCCchhhHhhHHHHHHhhh
Q 048744 136 VMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGR--KILLDPKR---GLLKQIVRQFDSSNYLRKKGVSGTIRNCC 209 (312)
Q Consensus 136 l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~gR--~~~l~~~~---~~l~~ll~~~~~~s~iRR~gva~~ikNcc 209 (312)
+..|.+++..+... -....+-+++|++..|+++ +++-..+. +-++.|+-...+.+.-=|+.++++|.|++
T Consensus 608 ~~~L~~LL~s~n~~----VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 608 WSTIENLMLDENVP----LQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHGGGCSSHH----HHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHH----HHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 67787777654211 1234678999999999997 44433221 23667777667778888888999999996
No 39
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.17 E-value=2.4e-06 Score=87.74 Aligned_cols=197 Identities=15% Similarity=0.161 Sum_probs=133.6
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHH-HHHhhccC-ccchhhHHHHHHhcCCC--hhH
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPS-LARLLSEN-KEVSEPATEALVNLSQN--SEL 78 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~-L~~L~~d~-~~~~~~Al~~LiNLS~d--~~~ 78 (312)
+++..+++-|+++.++.|..|+..|..+..+++.+..+.+. +.|.. |-.++.|. ..++..|+.+|-||+.+ ..+
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~--~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLRE--QVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHT--THHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHc--CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 35678999999999999999999999999888877776654 45554 56678887 88999999999999965 688
Q ss_pred HHHhhhhhHHHHHHHHHcCC-------C--------------ChhHHHHHHHHHhhcCCcc-chHHHhhhhhhhhhhhhH
Q 048744 79 AGKMVQMGMIKTAMDLLYKP-------D--------------SSITRLLVMLLVNLTQLDY-GISSLLQVEDEQIQGLYV 136 (312)
Q Consensus 79 ~~~l~~~~~i~~lv~~i~~~-------~--------------~~~ad~a~mLLsNLT~~~~-~~~~ll~~~~e~~~~~~l 136 (312)
+..+.+.|++..+...+... . +..++.++.+|.||+-... ....+.+. . .+
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~-----~--~l 184 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATK-----Q--TI 184 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTC-----H--HH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc-----c--cH
Confidence 99999988888777765320 0 1245567788888874432 22233221 1 37
Q ss_pred HHHHHHHhcCCCCCCCCchhhHHHHHHhhcCC-hhhhhhhcccccc-hhhhhhhcccCCchhhHhhHHHHHHhhhc
Q 048744 137 MKLVRSFCRSSSEASDDPFEHVGSILVNISKK-EAGRKILLDPKRG-LLKQIVRQFDSSNYLRKKGVSGTIRNCCF 210 (312)
Q Consensus 137 ~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~-~~gR~~~l~~~~~-~l~~ll~~~~~~s~iRR~gva~~ikNccF 210 (312)
..|+..+......+. .-....+..|.++|.- ++.-+.+.+.+.. ....++.... .+..+|.-+++++.|..+
T Consensus 185 ~~l~~~L~~~~~~~~-~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 185 LRLLFRLISADIAPQ-DIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHHHHHHHHCCSCH-HHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcH-HHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHhh
Confidence 788888766532211 1234466777787763 4555555554332 3344444323 445567889999999876
No 40
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.66 E-value=0.00033 Score=59.93 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=76.5
Q ss_pred cchHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHH
Q 048744 2 ANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAG 80 (312)
Q Consensus 2 ~~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~ 80 (312)
+..++.|+..|+++++.+|..|+..|..+.. +..++.|+.++.+. ..+...|+.+|-++..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 3568999999999999999999999876532 14677888888887 7788888888887753
Q ss_pred HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhh
Q 048744 81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVE 127 (312)
Q Consensus 81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~ 127 (312)
.+.++.++..+.++++.....++..|.++...+ .+..+....
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l 121 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-AVEPLIKAL 121 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHT
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-HHHHHHHHH
Confidence 246677777788877777778888888876432 344444433
No 41
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.54 E-value=0.00012 Score=74.40 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=99.0
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCCcc--chhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHH
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSED--GLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELA 79 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~--~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~ 79 (312)
+.+.-|+++|.+....+|-.|++.|..+..+.+ .++.|...+ ..|+.|+.+++|. ..++..|+..|.+|+.+....
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p-~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~i 200 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSP-MGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAI 200 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHST-THHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCc-ccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHH
Confidence 447789999999999999999999988876633 466677654 6799999999998 788899999999999776556
Q ss_pred HHhhhh-hHHHHHHHHHcCCCC----hhHHHHHHHHHhhcCCccchHHHhh
Q 048744 80 GKMVQM-GMIKTAMDLLYKPDS----SITRLLVMLLVNLTQLDYGISSLLQ 125 (312)
Q Consensus 80 ~~l~~~-~~i~~lv~~i~~~~~----~~ad~a~mLLsNLT~~~~~~~~ll~ 125 (312)
.+|+.. |+++++++.|..+.. .....|..+|.||.+....-..++.
T Consensus 201 QklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr 251 (651)
T 3grl_A 201 QKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK 251 (651)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666655 999999999987654 6888999999999998743334443
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.34 E-value=0.017 Score=48.68 Aligned_cols=152 Identities=13% Similarity=0.136 Sum_probs=104.6
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHH
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGK 81 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~ 81 (312)
...+.+++.|+++++.+|..|+..|..+.. +..++.|+.++.+. ..+...|+.+|-++..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 346889999999999999999999876531 14578888888887 7889999999987753
Q ss_pred hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHH
Q 048744 82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSI 161 (312)
Q Consensus 82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~v 161 (312)
.+.++.++..+.++++.....++..|.++...+ .+..|+.++...+.. --...+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-----------------~~~~L~~~l~d~~~~----vr~~a~~a 130 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-----------------AVEPLIKALKDEDWF----VRIAAAFA 130 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-----------------GHHHHHHHTTCSSHH----HHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-----------------HHHHHHHHHcCCCHH----HHHHHHHH
Confidence 256778888888988888888888888875321 234455544222100 01234455
Q ss_pred HHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhh
Q 048744 162 LVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCC 209 (312)
Q Consensus 162 l~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNcc 209 (312)
+.++.. ...+..|+..+.+++..-|..++.++.+..
T Consensus 131 L~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 131 LGEIGD------------ERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHTC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHhCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 555532 124555666666677777888888888773
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.32 E-value=0.0052 Score=63.65 Aligned_cols=195 Identities=15% Similarity=0.130 Sum_probs=117.0
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHHHh
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAGKM 82 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~~l 82 (312)
++.+++++++++++||..|+..+..+.....+ .+...-+.+++.|..++.++ ..+++.|+.+|.++... +.....-
T Consensus 176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~--~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 253 (852)
T 4fdd_A 176 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ--ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253 (852)
T ss_dssp HHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH--HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 45677888999999999999999887654322 12222235889999998887 78999999999999753 2221111
Q ss_pred hhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHh---------cCC---CCC
Q 048744 83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFC---------RSS---SEA 150 (312)
Q Consensus 83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~---------~~~---~~~ 150 (312)
+ .++++.++..+.++++..+..++..+.+++.... +...+. ..... .++.|+..+. +++ +..
T Consensus 254 l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~~~~---~~~~~-l~p~ll~~l~~~e~d~~~~~~d~~ed~~ 327 (852)
T 4fdd_A 254 M-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKDVLV---RHLPK-LIPVLVNGMKYSDIDIILLKGDVEGGSG 327 (852)
T ss_dssp H-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHHHHT---TTHHH-HHHHHHHHTSCCHHHHHHHHC-------
T ss_pred H-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHHHHH---HHHHH-HHHHHHHHcCCcHhHHHHhcCCcccccc
Confidence 1 2578888888888888888899999999987652 222221 10011 1333434332 121 000
Q ss_pred -----CCCc-hhhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccc
Q 048744 151 -----SDDP-FEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEA 212 (312)
Q Consensus 151 -----~~~~-~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~ 212 (312)
..-. ..-.+..+..++... | ..++. .++..+...+.+++...|.+++.++-+++-..
T Consensus 328 ~dd~~~~~~vr~~a~~~L~~la~~~-~-~~~~~---~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~ 390 (852)
T 4fdd_A 328 GDDTISDWNLRKCSAAALDVLANVY-R-DELLP---HILPLLKELLFHHEWVVKESGILVLGAIAEGC 390 (852)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHH-G-GGGHH---HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTT
T ss_pred cccccccchHHHHHHHHHHHHHHhc-c-HHHHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 0001 112334444444322 1 22222 13344444456678888999999999988543
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.29 E-value=0.0014 Score=66.70 Aligned_cols=197 Identities=17% Similarity=0.190 Sum_probs=136.4
Q ss_pred hHHHHHhccCC--CCHHHHHHHHHHHHhcCCC-ccc-----------------hhhhhhcccchHHHHHHhhccC-ccch
Q 048744 4 ELEELLGFLCS--PSPSVKKAAVDIVRGLTGS-EDG-----------------LQSLSKYSKIALPSLARLLSEN-KEVS 62 (312)
Q Consensus 4 ~l~ELv~FL~~--~~~~vR~~Al~~llgls~~-~~~-----------------~~~i~~~~~~~i~~L~~L~~d~-~~~~ 62 (312)
.++-|++-|+. .+.|+=+.+++.|+.+... ++. -+.+.+.. +.|..|+.++... -.+.
T Consensus 61 ~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~-~~i~~Ll~lL~~~df~vR 139 (651)
T 3grl_A 61 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQ-ENVTLLLSLLEEFDFHVR 139 (651)
T ss_dssp THHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHST-HHHHHHHHHTTCCCHHHH
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCC-ccHHHHHHHhcCccHHHH
Confidence 47789999984 4788888999999775433 221 01222333 5688999999777 7888
Q ss_pred hhHHHHHHhcCC-Chh-HHHHhhhh-hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHH
Q 048744 63 EPATEALVNLSQ-NSE-LAGKMVQM-GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKL 139 (312)
Q Consensus 63 ~~Al~~LiNLS~-d~~-~~~~l~~~-~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~L 139 (312)
-.|+.+|-.|+. .+. +.+.++.. +.|..+|+.+.|+.....+.+..+|++||+....+.+++... | .+.+|
T Consensus 140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFE-----n-aFe~L 213 (651)
T 3grl_A 140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFE-----N-AFERL 213 (651)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----T-HHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHh-----c-cHHHH
Confidence 899999999984 454 88888876 999999999999999999999999999999998887776642 2 47788
Q ss_pred HHHHhcCCCCCCCCc--hhhHHHHHHhhcCCh-hhhhhhcccccchhhhhhhcccCC------chhhHh---hHHHHHHh
Q 048744 140 VRSFCRSSSEASDDP--FEHVGSILVNISKKE-AGRKILLDPKRGLLKQIVRQFDSS------NYLRKK---GVSGTIRN 207 (312)
Q Consensus 140 l~~f~~~~~~~~~~~--~~~la~vl~NlS~~~-~gR~~~l~~~~~~l~~ll~~~~~~------s~iRR~---gva~~ikN 207 (312)
++.+..... .+++. -|-+ .++.||-+.- ....+|.+.+ .+++|.+.++.+ +.-|-. |+..+||=
T Consensus 214 f~Ii~~Eg~-~~Ggivv~DCL-~ll~nLLr~N~sNQ~~FrEt~--~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrl 289 (651)
T 3grl_A 214 LDIITEEGN-SDGGIVVEDCL-ILLQNLLKNNNSNQNFFKEGS--YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRV 289 (651)
T ss_dssp HHHHHHHTG-GGSHHHHHHHH-HHHHHHHTTCHHHHHHHHHTT--CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CccchhHHHHH-HHHHHHHhcCHHHHHHHHHcC--CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHH
Confidence 888866432 11111 1333 7788877654 4777777654 566666644322 211322 35666666
Q ss_pred hhcc
Q 048744 208 CCFE 211 (312)
Q Consensus 208 ccF~ 211 (312)
.|-.
T Consensus 290 Lv~~ 293 (651)
T 3grl_A 290 LVSP 293 (651)
T ss_dssp HTCT
T ss_pred HhCC
Confidence 6654
No 45
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.79 E-value=0.0077 Score=50.77 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=74.0
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHH
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGK 81 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~ 81 (312)
..++.|+++|.++++.||..|+..|..+. . +..++.|+.++.+. +.+...|+.+|-++..
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 105 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADALGQIG-D-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------- 105 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-C-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhhC-C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------
Confidence 46889999999999999999999886552 1 14678888888888 7899999999988754
Q ss_pred hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744 82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ 115 (312)
Q Consensus 82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~ 115 (312)
.++++.++..+.++++.....++..|.++..
T Consensus 106 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 106 ---ERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 2467778888888888888889999998853
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.69 E-value=0.18 Score=44.44 Aligned_cols=94 Identities=9% Similarity=0.038 Sum_probs=70.0
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM 82 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l 82 (312)
.++.|+..|.++++.+|..|+..|..+.. +..++.|+.++.+. +.+...|+.+|-++...+....
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~-- 89 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-- 89 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH--
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch--
Confidence 47899999999999999999999876641 14678888888888 7889999999999875433211
Q ss_pred hhhhHHHHHHH-HHcCCCChhHHHHHHHHHhhc
Q 048744 83 VQMGMIKTAMD-LLYKPDSSITRLLVMLLVNLT 114 (312)
Q Consensus 83 ~~~~~i~~lv~-~i~~~~~~~ad~a~mLLsNLT 114 (312)
..++.+.+ ...++++.....++..|.++.
T Consensus 90 ---~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~ 119 (280)
T 1oyz_A 90 ---NVFNILNNMALNDKSACVRATAIESTAQRC 119 (280)
T ss_dssp ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 23344443 345677777777888888875
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.67 E-value=0.017 Score=57.69 Aligned_cols=174 Identities=14% Similarity=0.236 Sum_probs=105.3
Q ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhHHHHhhh
Q 048744 7 ELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSELAGKMVQ 84 (312)
Q Consensus 7 ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~~~~l~~ 84 (312)
.+..-|.++|+.+|..|+..+..+. +++ +.. .+++.+++++.|. +.+++.|+.||.++.. +++.. -+
T Consensus 90 ~l~kdL~~~n~~ir~~AL~~L~~i~-~~~----~~~---~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~ 158 (591)
T 2vgl_B 90 SFVKDCEDPNPLIRALAVRTMGCIR-VDK----ITE---YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---ED 158 (591)
T ss_dssp HHGGGSSSSSHHHHHHHHHHHHTCC-SGG----GHH---HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCC-hHH----HHH---HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---cc
Confidence 3455577888888888888887764 221 221 4677888888888 8899999999999864 34322 12
Q ss_pred hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCch--hhHHHHH
Q 048744 85 MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPF--EHVGSIL 162 (312)
Q Consensus 85 ~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~--~~la~vl 162 (312)
.++++.+...+.|+++.....|.++|.++........ .+.... + .+.+|+..+...+ ++ -++..++
T Consensus 159 ~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~-~~~l~~----~-~~~~Ll~~l~~~~------~~~q~~il~~l 226 (591)
T 2vgl_B 159 QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN-LLDLNP----Q-NINKLLTALNECT------EWGQIFILDCL 226 (591)
T ss_dssp HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC-SCCCHH----H-HHHHHHHHHHHCC------HHHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc-chhccH----H-HHHHHHHcCCCCC------chHHHHHHHHH
Confidence 3788999999998888888889999999987664220 111100 0 2344444443321 11 1122333
Q ss_pred HhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhh
Q 048744 163 VNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCC 209 (312)
Q Consensus 163 ~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNcc 209 (312)
+++..... +. ...++..+++.+.+.+..-+-.++.+|-++.
T Consensus 227 ~~l~~~~~-~~-----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 227 SNYNPKDD-RE-----AQSICERVTPRLSHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp HTSCCCSH-HH-----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred HHhCCCCh-HH-----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 33321110 00 0125566666667766666777788887765
No 48
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.58 E-value=0.0062 Score=61.42 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=72.7
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhHHHHhh
Q 048744 6 EELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSELAGKMV 83 (312)
Q Consensus 6 ~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~~~~l~ 83 (312)
.-+..-|.++|+-+|..|+..+..+.. ++ +.. .+++.+.+++.+. +.+++.|+.||.++.. +++..+
T Consensus 110 n~l~kDL~~~n~~vr~lAL~~L~~i~~-~~----~~~---~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~--- 178 (618)
T 1w63_A 110 NCIKNDLNHSTQFVQGLALCTLGCMGS-SE----MCR---DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME--- 178 (618)
T ss_dssp HHHHHHHSCSSSHHHHHHHHHHHHHCC-HH----HHH---HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG---
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHhcCC-HH----HHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH---
Confidence 345667788899999999998888752 21 221 4678888888888 8899999999999974 443222
Q ss_pred hhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744 84 QMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD 117 (312)
Q Consensus 84 ~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~ 117 (312)
++++.+.+.+.|+++...-.|+.+|.-+...+
T Consensus 179 --~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 179 --MFLPATKNLLNEKNHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp --GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH
T ss_pred --HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC
Confidence 56666777777777777777888888887665
No 49
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.48 E-value=0.0094 Score=47.36 Aligned_cols=89 Identities=12% Similarity=0.081 Sum_probs=49.7
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM 82 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l 82 (312)
.++.|+.+|+++++.||..|+..|..+.. ..++.|+.++.|. +.++..|+.+|-++..
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGD-------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSS-------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCc-------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 35567777777777777777665543310 1135666666665 6677777777776653
Q ss_pred hhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744 83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ 115 (312)
Q Consensus 83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~ 115 (312)
...++.++..+.|+++.....++..|.++..
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 1345556666666666666667777777763
No 50
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.46 E-value=0.011 Score=50.29 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=78.9
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHH
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGK 81 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~ 81 (312)
..++.|+.+|+++++.||..|+..|-.+.. +..++.|+.++.|. +.+...|+.+|-++...
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------ 142 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE------ 142 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH------
Confidence 457889999999999999999999876631 14678888888888 78999999999888532
Q ss_pred hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhh
Q 048744 82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVE 127 (312)
Q Consensus 82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~ 127 (312)
..+..+...+.++++.....++..|.++.. +.....+.+..
T Consensus 143 ----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 143 ----RAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp ----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 467778888888888888888999999864 33344454444
No 51
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.41 E-value=0.027 Score=54.61 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=43.7
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccc--hhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDG--LQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS 73 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~--~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS 73 (312)
++-+++++++++++||..|+..+-.+...-.. +...+ .+.+++.+..++.|. ..+++.|+.+|-+++
T Consensus 283 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 283 VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI--MSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH--HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 55677888899999999998877665433111 10001 124777888888877 666777776666664
No 52
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.34 E-value=0.038 Score=57.10 Aligned_cols=188 Identities=14% Similarity=0.085 Sum_probs=109.0
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM 82 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l 82 (312)
-++.|+.++.+++++||+.|++.+..+...... .+..+-+.+++.+..++.+. ..++..|+..+.+++..+...+.+
T Consensus 216 ~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~--~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~ 293 (852)
T 4fdd_A 216 FIENLFALAGDEEPEVRKNVCRALVMLLEVRMD--RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVL 293 (852)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH--HHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHH
Confidence 356688888899999999999999888654322 12222225778888888887 789999999999999876555433
Q ss_pred hhh--hHHHHHHHHH-----------cC-----------CCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHH
Q 048744 83 VQM--GMIKTAMDLL-----------YK-----------PDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMK 138 (312)
Q Consensus 83 ~~~--~~i~~lv~~i-----------~~-----------~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~ 138 (312)
... ..++.++..+ .| ..+.....++..|..|+..-. ..++. . .+..
T Consensus 294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~-------~-l~~~ 363 (852)
T 4fdd_A 294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP-------H-ILPL 363 (852)
T ss_dssp TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH-------H-HHHH
T ss_pred HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH-------H-HHHH
Confidence 221 4566666665 23 222334445555554443221 11111 0 1233
Q ss_pred HHHHHhcCCCCCCCCchhhHHHHHHhhcCChhhhhhhcccc-cchhhhhhhcccCCchhhHhhHHHHHHhhhc
Q 048744 139 LVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPK-RGLLKQIVRQFDSSNYLRKKGVSGTIRNCCF 210 (312)
Q Consensus 139 Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~gR~~~l~~~-~~~l~~ll~~~~~~s~iRR~gva~~ikNccF 210 (312)
+.+.+...... .-+-.+..|.+++..... .+.+. ..++..+++.+.++++.-|..++.++-+.|=
T Consensus 364 l~~~l~~~~~~----~R~aa~~alg~i~~~~~~---~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 364 LKELLFHHEWV----VKESGILVLGAIAEGCMQ---GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 429 (852)
T ss_dssp HHHHHTCSSHH----HHHHHHHHHHHTTTTTHH---HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred HHHHhcCCCHH----HHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 33333222111 112234556666654321 22221 1355666666677888889999999999883
No 53
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.33 E-value=0.036 Score=51.97 Aligned_cols=241 Identities=11% Similarity=0.092 Sum_probs=127.3
Q ss_pred HHHHHhccCCC--CHHHHHHHHHHHHhcCCC-ccchh-hhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhH
Q 048744 5 LEELLGFLCSP--SPSVKKAAVDIVRGLTGS-EDGLQ-SLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SEL 78 (312)
Q Consensus 5 l~ELv~FL~~~--~~~vR~~Al~~llgls~~-~~~~~-~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~ 78 (312)
++-++++|.++ +++||..|+..+..+... .++.. ..+. +.+++.|..++.+. ..+++.|+.+|.++... +..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~ 251 (462)
T 1ibr_B 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER--HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (462)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888876 899999999998775432 11100 0111 12567777777766 77888899999988742 211
Q ss_pred HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHh---------------hhhhhhhhhhhHHHHHHHH
Q 048744 79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLL---------------QVEDEQIQGLYVMKLVRSF 143 (312)
Q Consensus 79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll---------------~~~~e~~~~~~l~~Ll~~f 143 (312)
....+..++++.++..+.+.++.....++..+++++.........- ....... ...++.+++.+
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l 330 (462)
T 1ibr_B 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTL 330 (462)
T ss_dssp CTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHH
Confidence 1111111566777777778777778888888888875431110000 0000000 11244555666
Q ss_pred hcCCCCCCCCc---hhhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHh
Q 048744 144 CRSSSEASDDP---FEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLL 220 (312)
Q Consensus 144 ~~~~~~~~~~~---~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll 220 (312)
...+.+...+. -.-.+..|..++..-. +.++. .++..+...+.+++...|.+++.+|-++|-..... -+
T Consensus 331 ~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~~---~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~---~~ 402 (462)
T 1ibr_B 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVP---HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS---QL 402 (462)
T ss_dssp TCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHHH---HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT---TT
T ss_pred HhcccccccccchHHHHHHHHHHHHHHhcc--HHHHH---HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHH---HH
Confidence 54322111111 1122333333332211 11221 13344444456678888999999999988532110 00
Q ss_pred hhc-cChhhhhhhcccCCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcCH
Q 048744 221 LIS-EFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQE 283 (312)
Q Consensus 221 ~~~-~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t~ 283 (312)
.+. ..++|.+ ++ .+ +++ ++.||...+.+|-.+|..-
T Consensus 403 ~~~l~~~~~~l---------------------~~-~l---~d~--~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 403 KPLVIQAMPTL---------------------IE-LM---KDP--SVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp CTTTTTHHHHH---------------------HH-GG---GCS--CHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHH---------------------HH-Hh---cCC--CHHHHHHHHHHHHHHHHhc
Confidence 000 1222222 11 12 122 7999999999999998543
No 54
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.20 E-value=0.12 Score=51.48 Aligned_cols=67 Identities=27% Similarity=0.254 Sum_probs=52.6
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN 75 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d 75 (312)
++.+...|.+++|.||+.|+..+..+....+. +... .++++.|..++.|. +.+...|+.+|.+++.+
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVED-QGFLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hccc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 45588999999999999999999876543221 1221 25789999999988 88999999999999865
No 55
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.11 E-value=0.0063 Score=61.65 Aligned_cols=97 Identities=15% Similarity=0.260 Sum_probs=72.1
Q ss_pred HhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhh--ccC-ccchhhHHHHHHhcCC-ChhHHHHhhh
Q 048744 9 LGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLL--SEN-KEVSEPATEALVNLSQ-NSELAGKMVQ 84 (312)
Q Consensus 9 v~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~--~d~-~~~~~~Al~~LiNLS~-d~~~~~~l~~ 84 (312)
..-|.++|+-+|..|+..+..+.. ++ +.. .+++.+++++ .|. +.++|.|+.|+.++.. +|+ ++.
T Consensus 117 ~kDl~~~n~~ir~lALr~L~~i~~-~e----~~~---~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~----~~~ 184 (621)
T 2vgl_A 117 KNDLASRNPTFMGLALHCIANVGS-RE----MAE---AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD----LVP 184 (621)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHCC-HH----HHH---HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG----GCC
T ss_pred HHhcCCCCHHHHHHHHHHhhccCC-HH----HHH---HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh----hcC
Confidence 344567888888888888888742 22 222 4667888888 777 8899999999999874 332 333
Q ss_pred -hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744 85 -MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD 117 (312)
Q Consensus 85 -~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~ 117 (312)
.++++.+.+.+.|+++.....|+.+|..+...+
T Consensus 185 ~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 185 MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 378899999998888888888888888887644
No 56
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.74 E-value=0.061 Score=47.58 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=56.0
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhhhHHH
Q 048744 11 FLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQMGMIK 89 (312)
Q Consensus 11 FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~ 89 (312)
+++++++.||..|+..|-.+...... + .+.+++.|..++.+. +.+...|+.+|-++... ++++
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~----~--~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~----------~~~~ 162 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPI----Y--SPKIVEQSQITAFDKSTNVRRATAFAISVINDK----------ATIP 162 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGG----G--HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCc----c--cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH----------HHHH
Confidence 56677888888888877666421110 0 114567777777776 67777788888776532 3566
Q ss_pred HHHHHHcCCCChhHHHHHHHHHhhc
Q 048744 90 TAMDLLYKPDSSITRLLVMLLVNLT 114 (312)
Q Consensus 90 ~lv~~i~~~~~~~ad~a~mLLsNLT 114 (312)
.++..+.++++.....++..|.++.
T Consensus 163 ~L~~~l~d~~~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 163 LLINLLKDPNGDVRNWAAFAININK 187 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 6667777776666666777777774
No 57
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.60 E-value=0.017 Score=50.54 Aligned_cols=183 Identities=9% Similarity=0.145 Sum_probs=109.0
Q ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhc-cC-ccchhhHHHHHHhcCCChhHHHHhhh
Q 048744 7 ELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLS-EN-KEVSEPATEALVNLSQNSELAGKMVQ 84 (312)
Q Consensus 7 ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~-d~-~~~~~~Al~~LiNLS~d~~~~~~l~~ 84 (312)
.+.+.+++.+...|+.|+..|..+....+. .....-..+++.|..++. |. ..+...|+.+|--|+.. ....+-.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~--~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~--l~~~~~~ 94 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPK--LENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG--LAKRFSN 94 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSS--BCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--HGGGGHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCC--CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--HhhhHHH
Confidence 477888999999999999999888643111 111111257888888885 77 77888999999888832 1111111
Q ss_pred --hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHH
Q 048744 85 --MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSIL 162 (312)
Q Consensus 85 --~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl 162 (312)
..+++.+++.+.|++....+.++..|.++...-. ... .++.|...+.......+.....+++.++
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~~------------ll~~l~~~l~~~~~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LEA------------QQESIVESLSNKNPSVKSETALFIARAL 161 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HHH------------HHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HHH------------HHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 1467788888999988888899999998865431 111 2334444443221111223345555554
Q ss_pred HhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhc
Q 048744 163 VNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCF 210 (312)
Q Consensus 163 ~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF 210 (312)
.+...-..+..++ . .++..++..++..+..=|..+..++-.++-
T Consensus 162 ~~~~~~~~~~~~l-~---~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 162 TRTQPTALNKKLL-K---LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp TTCCGGGCCHHHH-H---HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCccHHHH-H---HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 4432100111222 1 245555555665666667777777777663
No 58
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=94.10 E-value=0.074 Score=50.40 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=74.6
Q ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHHHHhhh
Q 048744 7 ELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELAGKMVQ 84 (312)
Q Consensus 7 ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~~~l~~ 84 (312)
-|...+.++||-+|..|+..+..+...+ +.. .+.+.+++.+.|. +.+++.|+.|...|..+ |++.+
T Consensus 108 sl~kDl~~~N~~iR~lALRtL~~I~~~~-----m~~---~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~---- 175 (355)
T 3tjz_B 108 SLTKDMTGKEDSYRGPAVRALCQITDST-----MLQ---AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK---- 175 (355)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCTT-----THH---HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH----
T ss_pred HHHhhcCCCcHhHHHHHHHHHhcCCCHH-----HHH---HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH----
Confidence 3556777899999999999998886433 222 4677888889888 89999999999999854 44332
Q ss_pred hhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744 85 MGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD 117 (312)
Q Consensus 85 ~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~ 117 (312)
+|++.+-+.+.+.++...-.|..+|..+...+
T Consensus 176 -~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 176 -RWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp -TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 58888888898877766667778888887655
No 59
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=93.98 E-value=0.22 Score=50.00 Aligned_cols=99 Identities=12% Similarity=0.131 Sum_probs=66.1
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhh
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMV 83 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~ 83 (312)
+.-|..||.+++++||..|+..+..+....+. +++ .....++.++.|. ..+++.|+.+|..++....+.
T Consensus 315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~~---~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~---- 384 (618)
T 1w63_A 315 INILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AVQ---RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIR---- 384 (618)
T ss_dssp HHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HHG---GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTH----
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HHH---HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHH----
Confidence 45677888888888888888888766543221 222 2355777777776 788888888888887654432
Q ss_pred hhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744 84 QMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ 115 (312)
Q Consensus 84 ~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~ 115 (312)
..+..++.++.+.+......++..+.+++.
T Consensus 385 --~iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 385 --GMMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp --HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 234556666666666677777777777754
No 60
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=93.91 E-value=0.086 Score=50.99 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=68.8
Q ss_pred HHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHhhhhh
Q 048744 8 LLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKMVQMG 86 (312)
Q Consensus 8 Lv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l~~~~ 86 (312)
+...++++++.||..|++.+-.+...-.+. ... +.+++.+..++.|. ..+++.|+.+|..++..-. ..-....
T Consensus 169 l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~-~~~---~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~ 242 (588)
T 1b3u_A 169 FRNLCSDDTPMVRRAAASKLGEFAKVLELD-NVK---SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP--QEDLEAL 242 (588)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHTSCHH-HHH---HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC--HHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcHH-hHH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC--HHHHHHH
Confidence 345557889999999999887775432211 111 25788888888887 7788888888887763210 0111124
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744 87 MIKTAMDLLYKPDSSITRLLVMLLVNLTQ 115 (312)
Q Consensus 87 ~i~~lv~~i~~~~~~~ad~a~mLLsNLT~ 115 (312)
+++.+...+.++++.....++..|.++..
T Consensus 243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~ 271 (588)
T 1b3u_A 243 VMPTLRQAAEDKSWRVRYMVADKFTELQK 271 (588)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 56677777888888777788888887764
No 61
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=93.70 E-value=0.018 Score=45.61 Aligned_cols=87 Identities=20% Similarity=0.182 Sum_probs=67.8
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM 82 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l 82 (312)
.++.|+..|+++++.||..|+..|-.+.. +..++.|..++.|. +.++..|+.+|-++..
T Consensus 43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------- 102 (131)
T 1te4_A 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQD------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------- 102 (131)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGCS------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------
Confidence 46889999999999999999998765531 13577888888887 8899999999998862
Q ss_pred hhhhHHHHHHHHHcCCCChhHHHHHHHHHh
Q 048744 83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVN 112 (312)
Q Consensus 83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsN 112 (312)
.+.++.+...+.++++.....++..|.+
T Consensus 103 --~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 --ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3567778888888887777777766654
No 62
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=93.66 E-value=1.1 Score=45.33 Aligned_cols=192 Identities=13% Similarity=0.186 Sum_probs=105.0
Q ss_pred HHhccCCC--CHHHHHHHHHHHHhcCCC-ccchh-hhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hh-HHH
Q 048744 8 LLGFLCSP--SPSVKKAAVDIVRGLTGS-EDGLQ-SLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SE-LAG 80 (312)
Q Consensus 8 Lv~FL~~~--~~~vR~~Al~~llgls~~-~~~~~-~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~-~~~ 80 (312)
+++.+.++ +++||..|+..+..+... .++-. ... . +.+++.|..++.+. ..+++.|+.+|..+... +. +..
T Consensus 184 l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~-~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 261 (861)
T 2bpt_A 184 IVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGE-R-NYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKP 261 (861)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHH-H-HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhH-H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566766 899999999998775422 11100 000 1 13677777777776 77888899999888642 11 122
Q ss_pred HhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchH--------------HHhhhhhhhhhhhhHHHHHHHHhcC
Q 048744 81 KMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGIS--------------SLLQVEDEQIQGLYVMKLVRSFCRS 146 (312)
Q Consensus 81 ~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~--------------~ll~~~~e~~~~~~l~~Ll~~f~~~ 146 (312)
.+ ...++..++..+.+++......++..++++........ .++. ... ...++.++..+...
T Consensus 262 ~l-~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~il~~ll~~l~~~ 336 (861)
T 2bpt_A 262 YM-EQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL---SSI-KDVVPNLLNLLTRQ 336 (861)
T ss_dssp HH-HHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH---HHH-HHHHHHHHHHTTCC
T ss_pred HH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHH---HHH-HHHHHHHHHHHHhc
Confidence 22 11566667777788877888888888888865431100 0000 000 11245666666654
Q ss_pred CCCCCCCch---hhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhcc
Q 048744 147 SSEASDDPF---EHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFE 211 (312)
Q Consensus 147 ~~~~~~~~~---~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~ 211 (312)
..+...+.+ ...+..|.+++..- | ..++. .++..+...+.+.+...|.+++.++-+++-.
T Consensus 337 ~~d~~d~~~~~r~~a~~~L~~l~~~~-~-~~~~~---~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 399 (861)
T 2bpt_A 337 NEDPEDDDWNVSMSAGACLQLFAQNC-G-NHILE---PVLEFVEQNITADNWRNREAAVMAFGSIMDG 399 (861)
T ss_dssp CCC-CCCCCHHHHHHHHHHHHHHHHH-G-GGGHH---HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred ccccccccCcHHHHHHHHHHHHHHHc-c-HhHHH---HHHHHHHHHcCCCChhHHHHHHHHHHHHHcC
Confidence 321111111 12334444444321 1 11111 1233333344566777889999999988843
No 63
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.08 E-value=0.19 Score=43.67 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=75.1
Q ss_pred HHHHHhccC-CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744 5 LEELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM 82 (312)
Q Consensus 5 l~ELv~FL~-~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l 82 (312)
+.-|...|. ++++.||+.|+..+-.+...- + ..+..+-..+++.|+..++|. ..++..|..+|-++.....+
T Consensus 58 ~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l-~-~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~---- 131 (242)
T 2qk2_A 58 VSALKKVITKDSNVVLVAMAGKCLALLAKGL-A-KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL---- 131 (242)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH-G-GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHH-h-hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----
Confidence 344566674 899999999999998887431 1 122222235899999999998 67888888888888764322
Q ss_pred hhhhHHHHHHHHHcCCCChhHHHHHHHHHhh-cCC
Q 048744 83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNL-TQL 116 (312)
Q Consensus 83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNL-T~~ 116 (312)
..+++.+...+.+.++.....++..|..+ ++.
T Consensus 132 --~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 132 --EAQQESIVESLSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp --HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 24677888888888877777888888884 444
No 64
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=92.47 E-value=1.6 Score=44.30 Aligned_cols=110 Identities=10% Similarity=0.089 Sum_probs=71.2
Q ss_pred HHHHHhccCCC--CHHHHHHHHHHHHhcCCC-ccch-hhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhH
Q 048744 5 LEELLGFLCSP--SPSVKKAAVDIVRGLTGS-EDGL-QSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSEL 78 (312)
Q Consensus 5 l~ELv~FL~~~--~~~vR~~Al~~llgls~~-~~~~-~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~ 78 (312)
++-+.+.+.++ +++||..|+..+..+... .++. ...+. +.+++.+..++.+. ..++..|+.+|..+.. .+..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER--HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 34466677765 799999999988765432 1110 00111 13677777777766 6778889999998864 2222
Q ss_pred HHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCC
Q 048744 79 AGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQL 116 (312)
Q Consensus 79 ~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~ 116 (312)
....+...+++.++..+.+++......++..++++.+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 12222235677777777777777788888888888754
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=92.33 E-value=0.52 Score=48.00 Aligned_cols=161 Identities=9% Similarity=0.037 Sum_probs=98.8
Q ss_pred chHHHHHHhhccCccchhhHHHHHHhcCCChhHHHHhhhhhHHHHHHH-HHcCCCChhHHHHHHHHHhhcCCc--cchHH
Q 048744 46 IALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMVQMGMIKTAMD-LLYKPDSSITRLLVMLLVNLTQLD--YGISS 122 (312)
Q Consensus 46 ~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~~~~l~~~~~i~~lv~-~i~~~~~~~ad~a~mLLsNLT~~~--~~~~~ 122 (312)
.++|-|-.|-+..+..+.-|+.+|-||+.++..+..+.+.+.|..++. .+.|++......|+..|.||+..+ ..|..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 466655554444488999999999999999999999998888887665 588899999999999999999764 23344
Q ss_pred HhhhhhhhhhhhhHHHHHHHHhc-------CCCC-CCC------CchhhH---HHHHHhhcC-Chhhhhhhcccccchhh
Q 048744 123 LLQVEDEQIQGLYVMKLVRSFCR-------SSSE-ASD------DPFEHV---GSILVNISK-KEAGRKILLDPKRGLLK 184 (312)
Q Consensus 123 ll~~~~e~~~~~~l~~Ll~~f~~-------~~~~-~~~------~~~~~l---a~vl~NlS~-~~~gR~~~l~~~~~~l~ 184 (312)
++..+ .+..|..+|-+ .... .+. --+++. .++|.|++. ..+....+... +.+.
T Consensus 115 l~~~~-------il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~--~~l~ 185 (684)
T 4gmo_A 115 LYRLD-------VLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATK--QTIL 185 (684)
T ss_dssp HHHTT-------HHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTC--HHHH
T ss_pred HHHcC-------hHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc--ccHH
Confidence 44432 13344444322 1110 000 012333 344555442 23334444443 3455
Q ss_pred hhhhccc---CCchhhHhhHHHHHHhhhccchhh
Q 048744 185 QIVRQFD---SSNYLRKKGVSGTIRNCCFEAEHQ 215 (312)
Q Consensus 185 ~ll~~~~---~~s~iRR~gva~~ikNccF~~~~H 215 (312)
.++..+. ..+.--+..++.+|.+++=|....
T Consensus 186 ~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~ 219 (684)
T 4gmo_A 186 RLLFRLISADIAPQDIYEEAISCLTTLSEDNLKV 219 (684)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHH
Confidence 5555432 123445778888998888765443
No 66
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=92.25 E-value=0.71 Score=49.60 Aligned_cols=107 Identities=14% Similarity=0.139 Sum_probs=74.8
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhh-hcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC-hhHH
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLS-KYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN-SELA 79 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~-~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d-~~~~ 79 (312)
.++..|++=+.++++++|..|++.|......+... +- ...+.+++.|+..+.+. ..+++.|+.+|-++... +.
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~--~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-- 81 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIK--LDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-- 81 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCS--CCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccC--CChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--
Confidence 45888888899999999999999887664332110 00 01124778888888877 78889999999888643 11
Q ss_pred HHhhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcC
Q 048744 80 GKMVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQ 115 (312)
Q Consensus 80 ~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~ 115 (312)
..+ ..++..++..+.++++.....++..|+.++.
T Consensus 82 ~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~ 115 (1230)
T 1u6g_C 82 YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIG 115 (1230)
T ss_dssp HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 111 2456778888888888777778887777653
No 67
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=91.56 E-value=1.5 Score=44.41 Aligned_cols=183 Identities=15% Similarity=0.103 Sum_probs=100.0
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC---ccchhhHHHHHHhc-CCChhHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN---KEVSEPATEALVNL-SQNSELA 79 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~---~~~~~~Al~~LiNL-S~d~~~~ 79 (312)
++.+++.-+.++++++|+.|.+.|-.+..+ +.++++..|+..+.+. ..++.-|..+|-|. ..+...+
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~---------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~ 72 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVE---------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDI 72 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhc---------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHh
Confidence 577888888899999999999999775321 0124666777776552 46677888888874 3331111
Q ss_pred --------HHhhh--h-hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcC--
Q 048744 80 --------GKMVQ--M-GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRS-- 146 (312)
Q Consensus 80 --------~~l~~--~-~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~-- 146 (312)
..+-. . .+-..++..+.++++.. ..++.+++.+.+.+.. ...++. .++.|+..+..+
T Consensus 73 ~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~--------~~~w~~-ll~~l~~~l~~~~~ 142 (876)
T 1qgr_A 73 KAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP--------VNQWPE-LIPQLVANVTNPNS 142 (876)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG--------GTCCTT-HHHHHHHHHHCTTC
T ss_pred HHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc--------ccccHH-HHHHHHHHHhCCCC
Confidence 11111 1 22335777777777666 7888888888765421 012332 355666666544
Q ss_pred CCCCCCCchhhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCC--chhhHhhHHHHHHhhhc
Q 048744 147 SSEASDDPFEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSS--NYLRKKGVSGTIRNCCF 210 (312)
Q Consensus 147 ~~~~~~~~~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~--s~iRR~gva~~ikNccF 210 (312)
+...+...+.-++.++..+. ++ .+-..-..++..++..+.++ +..-|..++.++.+++-
T Consensus 143 ~~~~r~~al~~l~~l~~~~~--~~---~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 143 TEHMKESTLEAIGYICQDID--PE---QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHSC--HH---HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHHHHhcC--Hh---hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 11111112233333333221 11 12111112334444334433 56667788899988873
No 68
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=91.39 E-value=5.4 Score=42.73 Aligned_cols=104 Identities=13% Similarity=0.170 Sum_probs=69.6
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC--hh----
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN--SE---- 77 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d--~~---- 77 (312)
+..|++.|.++++.||+.|+..+..+...-.. ..+ +.+++.|+..+.+. ..++..|..+|-.++.. +.
T Consensus 50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~----~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~ 124 (1230)
T 1u6g_C 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGS 124 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----C
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccccc
Confidence 56788999999999999999998777644221 111 14677888888776 66666677777665421 11
Q ss_pred -HHHHhhhhhHHHHHHHHHcC-CCChhHHHHHHHHHhhc
Q 048744 78 -LAGKMVQMGMIKTAMDLLYK-PDSSITRLLVMLLVNLT 114 (312)
Q Consensus 78 -~~~~l~~~~~i~~lv~~i~~-~~~~~ad~a~mLLsNLT 114 (312)
..... -..+++.++..+.+ +++.....++..|+++.
T Consensus 125 ~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 125 ALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp CTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred chHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 00101 12567888888874 66677778888888876
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=90.87 E-value=2.3 Score=38.21 Aligned_cols=65 Identities=17% Similarity=0.112 Sum_probs=38.7
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEAL 69 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~L 69 (312)
.+..|+.||++.++.+|..|+..|=-+....++.-...... ..++.++.++.+. ..++-.|+.||
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L 99 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRAL 99 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHH
Confidence 46789999999999999999988866654422221111111 3455555555444 44555555544
No 70
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=89.76 E-value=0.57 Score=47.57 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=67.0
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCcc----chhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCCC-----
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSED----GLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQN----- 75 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~----~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d----- 75 (312)
++.|+..+.++++.||..|+..+-.++..-. +... + +.+++.|+..+++.+.++..|..+|.+++..
T Consensus 413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~---~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~ 488 (861)
T 2bpt_A 413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-L---PGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEAT 488 (861)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-H---HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-H---HHHHHHHHHHhccChHHHHHHHHHHHHHHHhccccc
Confidence 5667888899999999999876655543211 1111 1 2578888888888777788888888887642
Q ss_pred -hhHHHHhhhhhHHHHHHHHHcCCC--ChhHHHHHHHHHhhcCC
Q 048744 76 -SELAGKMVQMGMIKTAMDLLYKPD--SSITRLLVMLLVNLTQL 116 (312)
Q Consensus 76 -~~~~~~l~~~~~i~~lv~~i~~~~--~~~ad~a~mLLsNLT~~ 116 (312)
..+..++ ..++..++..+.+++ +.....++..+.++...
T Consensus 489 ~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 489 PSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEY 530 (861)
T ss_dssp SCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred chhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence 1111111 245667777776433 44444566666666543
No 71
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=89.30 E-value=1.1 Score=42.06 Aligned_cols=112 Identities=14% Similarity=0.071 Sum_probs=84.1
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHh-cCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRG-LTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM 82 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llg-ls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l 82 (312)
..++++-|.+.+...++.|+-.|-. ++...+--....+++ | +..|++.+.+. ......|++||.+|-.....-+-+
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~-G-L~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSE-G-LSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTT-H-HHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhc-c-HHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence 5567777777777778888888887 665444333322332 3 78888888776 778999999999999887777777
Q ss_pred hhh-hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCcc
Q 048744 83 VQM-GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDY 118 (312)
Q Consensus 83 ~~~-~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~ 118 (312)
++. .+|.+++.++.+........+..||-++.-..+
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se 234 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE 234 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc
Confidence 754 899999999997666778888999988866554
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=88.89 E-value=1.5 Score=38.23 Aligned_cols=75 Identities=25% Similarity=0.397 Sum_probs=58.3
Q ss_pred CcchHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhH
Q 048744 1 MANELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSEL 78 (312)
Q Consensus 1 m~~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~ 78 (312)
|+.-++|+.+.|++++..=|-.|+..+-++..+. -+.+ . -++|-|..|+.|. .-+...|+.+|+|+.. ++.+
T Consensus 142 ~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~--~~yv---~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npkl 215 (253)
T 2db0_A 142 MASIVRDFMSMLSSKNREDKLTALNFIEAMGENS--FKYV---N-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL 215 (253)
T ss_dssp HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT--HHHH---G-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC--cccc---C-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH
Confidence 3566889999999999888999999998885433 1121 1 4799999999999 7788899999999985 4554
Q ss_pred HHH
Q 048744 79 AGK 81 (312)
Q Consensus 79 ~~~ 81 (312)
+..
T Consensus 216 Rki 218 (253)
T 2db0_A 216 RKV 218 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 73
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=88.46 E-value=4.1 Score=37.63 Aligned_cols=190 Identities=10% Similarity=0.044 Sum_probs=103.0
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhccc-chHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHH--
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSK-IALPSLARLLSEN-KEVSEPATEALVNLSQNSELAG-- 80 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~-~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~-- 80 (312)
++.|.+.+.++.++||+.|++.+..+...... .+...-. .+++.+...+.+. ..++..|+..+.+++.......
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~ 296 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ--YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 296 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG--GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667788999999999999887654321 1212222 4677777777776 7788889998888864421000
Q ss_pred ----------------Hhhh---hhHHHHHHHHHcCC-------CChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhh
Q 048744 81 ----------------KMVQ---MGMIKTAMDLLYKP-------DSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGL 134 (312)
Q Consensus 81 ----------------~l~~---~~~i~~lv~~i~~~-------~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~ 134 (312)
.+++ ..+++.++..+.+. ++.....++..|..++..-. ..++. .
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~~-------~- 366 (462)
T 1ibr_B 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVP-------H- 366 (462)
T ss_dssp HCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHHH-------H-
T ss_pred cccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHHHH-------H-
Confidence 0111 23455666666532 23455566677766654321 11111 0
Q ss_pred hHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCChhhhhhhcccc-cchhhhhhhcccCCchhhHhhHHHHHHhhhccc
Q 048744 135 YVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLDPK-RGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEA 212 (312)
Q Consensus 135 ~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~gR~~~l~~~-~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~ 212 (312)
.++.+...+.......+ +-....|.+++.-... .. +.+. ..++..+++.+.++++.-|..++.++-++|-..
T Consensus 367 ~~~~l~~~l~~~~~~~r----~aal~~l~~l~~~~~~-~~-~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 367 VLPFIKEHIKNPDWRYR----DAAVMAFGCILEGPEP-SQ-LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHTTCSSHHHH----HHHHHHHHHTSSSSCT-TT-TCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhcCCChHHH----HHHHHHHHHHhcCCcH-HH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 12233333322211111 1123455555542110 11 1111 135566666677788888999999999999543
No 74
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=87.61 E-value=0.5 Score=41.87 Aligned_cols=71 Identities=13% Similarity=0.299 Sum_probs=52.3
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccch-hhhhhcc-cchHHHHHHhhccC-ccchhhHHHHHHhcC
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGL-QSLSKYS-KIALPSLARLLSEN-KEVSEPATEALVNLS 73 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~-~~i~~~~-~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS 73 (312)
.-++.|+.+|.++++.+|..|+..|..+....... ..+...- +.+++.|..++.|. +.++..|..+|.-+.
T Consensus 146 ~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 146 DMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34778999999999999999999987776442210 2222222 46899999999998 778888888777654
No 75
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=85.56 E-value=1.5 Score=38.80 Aligned_cols=191 Identities=5% Similarity=0.009 Sum_probs=101.7
Q ss_pred HHhccCCCCHHHHHHHHHHHHh-cC-CCccchhhhhhcccchHHHHHHhh-ccC-ccchhhHHHHHHhcCCChhHH-HHh
Q 048744 8 LLGFLCSPSPSVKKAAVDIVRG-LT-GSEDGLQSLSKYSKIALPSLARLL-SEN-KEVSEPATEALVNLSQNSELA-GKM 82 (312)
Q Consensus 8 Lv~FL~~~~~~vR~~Al~~llg-ls-~~~~~~~~i~~~~~~~i~~L~~L~-~d~-~~~~~~Al~~LiNLS~d~~~~-~~l 82 (312)
..+.+.+++..-|+.|++.|.. +. +...-... ...-..+++.|+..+ .|. ..++..|+.||-.++. ... ..+
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~-~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~--~l~~~~f 97 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKST-SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICD--KLKTPGF 97 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCT-TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH--HHCTTTS
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccC-cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH--hcccccc
Confidence 3455689999999999999999 75 32221100 011125788888888 576 6678888888888872 112 112
Q ss_pred h-hh--hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHH
Q 048744 83 V-QM--GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVG 159 (312)
Q Consensus 83 ~-~~--~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la 159 (312)
. .. .+++.+++.+.+.+....+.+...|.++..+-... ...... +. .+..|+..+-......+...+.+++
T Consensus 98 ~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~-~~~~~l----~~-ll~~l~~~l~~k~~~vk~~al~~l~ 171 (249)
T 2qk1_A 98 SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL-ASSGRN----ED-MLKDILEHMKHKTPQIRMECTQLFN 171 (249)
T ss_dssp CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT-CTTCTT----HH-HHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc-ccCCcH----HH-HHHHHHHHHcCCChHHHHHHHHHHH
Confidence 1 11 35778888888887776666666666554321100 000000 00 2334444443321112234467777
Q ss_pred HHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhh
Q 048744 160 SILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCC 209 (312)
Q Consensus 160 ~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNcc 209 (312)
.++.+-...|.-=...+.+ .++..+...+...+..-|..+..++--+|
T Consensus 172 ~~~~~~~~~~~~l~~~l~~--~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 172 ASMKEEKDGYSTLQRYLKD--EVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHHCCSCSHHHHHHHTT--THHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcchhHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 7776543321210001111 14455555555555555666666666655
No 76
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=84.66 E-value=3 Score=41.90 Aligned_cols=94 Identities=21% Similarity=0.275 Sum_probs=63.2
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhc-cC-ccchhhHHHHHHhcCCChhHHHH
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLS-EN-KEVSEPATEALVNLSQNSELAGK 81 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~-d~-~~~~~~Al~~LiNLS~d~~~~~~ 81 (312)
.+.-|..||.++++++|-.|+..+..+....+....+ + .....++.++. |. ..++..|+.+|..++.... .+.
T Consensus 330 ~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~-~---~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N-v~~ 404 (621)
T 2vgl_A 330 ACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV-K---THIETVINALKTERDVSVRQRAVDLLYAMCDRSN-AQQ 404 (621)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH-H---TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH-HHH
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH-H---HHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh-HHH
Confidence 3567889999999999999999999988664322222 2 23557777776 66 8899999999999986543 333
Q ss_pred hhhhhHHHHHHHHHcCCCChhHHHHH
Q 048744 82 MVQMGMIKTAMDLLYKPDSSITRLLV 107 (312)
Q Consensus 82 l~~~~~i~~lv~~i~~~~~~~ad~a~ 107 (312)
++..+..++.+.+......+.
T Consensus 405 -----Iv~eL~~yl~~~d~~~~~~~v 425 (621)
T 2vgl_A 405 -----IVAEMLSYLETADYSIREEIV 425 (621)
T ss_dssp -----HHHHHHHHHHHCCHHHHHHHH
T ss_pred -----HHHHHHHHHHhcCHHHHHHHH
Confidence 334455555544444443333
No 77
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=77.80 E-value=9.8 Score=35.58 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=75.7
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCCh-hHHHHh
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNS-ELAGKM 82 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~-~~~~~l 82 (312)
+..|+.-..+........|+..+..+=.-.+|..-+.+++ .+|+.|..++... ..+.+-|+.+|.++.... .....+
T Consensus 162 L~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~-~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv 240 (339)
T 3dad_A 162 LSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS-DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLF 240 (339)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH-HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHH
Confidence 5567777787888999999999999987788877676654 6899999999877 889999999999997443 233322
Q ss_pred hhh-h---------HHHHHHHHHcCCC--ChhHHHHHHHHHh
Q 048744 83 VQM-G---------MIKTAMDLLYKPD--SSITRLLVMLLVN 112 (312)
Q Consensus 83 ~~~-~---------~i~~lv~~i~~~~--~~~ad~a~mLLsN 112 (312)
.+. . ....+|..+.+.+ ..-.-..+|.|-|
T Consensus 241 ~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 241 IRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 221 1 2557888886322 2333355666666
No 78
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=76.43 E-value=18 Score=33.80 Aligned_cols=194 Identities=11% Similarity=0.056 Sum_probs=121.3
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCcc-----chhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCCChhHH
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSED-----GLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELA 79 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~-----~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~~ 79 (312)
+..|+..|+.=.-+.|+.+..+..++-.... ..+.|.+++ .++..|+.-.. .+.++-.+=.+|-....++.++
T Consensus 80 l~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~p-eil~~L~~gYe-~~diAl~~G~mLRecir~e~la 157 (341)
T 1upk_A 80 LSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQ-NILFMLLKGYE-SPEIALNCGIMLRECIRHEPLA 157 (341)
T ss_dssp HHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCT-HHHHHHHHGGG-STTTHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCH-HHHHHHHHhhc-cchhHhHHHHHHHHHHHhHHHH
Confidence 5567777887777888888877666544322 233455543 45555544332 3667777888888999999999
Q ss_pred HHhhhhhHHHHHHHHHcCCCChhHHHHHHHHH-hhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhH
Q 048744 80 GKMVQMGMIKTAMDLLYKPDSSITRLLVMLLV-NLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHV 158 (312)
Q Consensus 80 ~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLs-NLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~l 158 (312)
..++..+.+..+++++..++-..|-.|...+- =||+++.-+..++..-- .. .....-.++..+.|-.+--++..|
T Consensus 158 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~ny---d~-Ff~~y~~Ll~S~NYVTkRQSlKLL 233 (341)
T 1upk_A 158 KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHY---DR-FFSEYEKLLHSENYVTKRQSLKLL 233 (341)
T ss_dssp HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTH---HH-HHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhH---HH-HHHHHHHHhcCCcchhHHHHHHHH
Confidence 99998888889999999988776666655443 45888877766665421 11 223333333334333222245677
Q ss_pred HHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHH
Q 048744 159 GSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIR 206 (312)
Q Consensus 159 a~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ik 206 (312)
+.+|.|=+-..--.+|+-++.+ ++.++..+.++|.--+-.+..+.|
T Consensus 234 gelLldr~N~~vM~~Yis~~~n--Lkl~M~LL~d~sk~Iq~EAFhVFK 279 (341)
T 1upk_A 234 GELLLDRHNFTIMTKYISKPEN--LKLMMNLLRDKSRNIQFEAFHVFK 279 (341)
T ss_dssp HHHHHSGGGHHHHHHHTTCHHH--HHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHhCchHHHHHHHHhCCHHH--HHHHHHHhcCchhchhhhhhhhee
Confidence 7888777766666677766653 555555555555443444444443
No 79
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=72.79 E-value=15 Score=32.95 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=54.9
Q ss_pred HHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC---ChhHHHHhh
Q 048744 8 LLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ---NSELAGKMV 83 (312)
Q Consensus 8 Lv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~---d~~~~~~l~ 83 (312)
|.+.++++|+-++..|++.+=.+...... +.++..|.+|++.. +....-|+++|.|++. |+++.+.+.
T Consensus 120 L~dlik~~~~il~~eaae~Lgklkv~~~~--------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~ 191 (265)
T 3b2a_A 120 LVSLLESPDDMMRIETIDVLSKLQPLEDS--------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLIL 191 (265)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHHCCBSCCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTT
T ss_pred HHHHhcCCCchHHHHHHHHhCcCCcccch--------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 44445555555566666555555222211 13455666666444 6677777777777753 444444443
Q ss_pred hhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCc
Q 048744 84 QMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLD 117 (312)
Q Consensus 84 ~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~ 117 (312)
+ -+-+++..+++...+.|.-.|.++...+
T Consensus 192 ~-----eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 192 D-----EIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp T-----THHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred H-----HHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 2 2334556667777777777777776554
No 80
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=65.06 E-value=14 Score=39.32 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=71.0
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCCChhHHHHh
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAGKM 82 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~~~~l 82 (312)
+-++.+-+-+.+..++|++.|...+..+++.-+|++. . ..||.|+..+.+... .-.++..|-.-+-..+|-..-
T Consensus 175 ~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~----~-~~~~~~~~~~~~p~~-~~~~~~~l~~~tfv~~v~~~~ 248 (986)
T 2iw3_A 175 ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI----E-RFIPSLIQCIADPTE-VPETVHLLGATTFVAEVTPAT 248 (986)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT----G-GGHHHHHHHHHCTTH-HHHHHHHHTTCCCCSCCCHHH
T ss_pred chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch----h-hhHHHHHHHhcChhh-hHHHHHHhhcCeeEeeecchh
Confidence 3344555556688999999999998888766666543 1 479999999888733 333444443333222222211
Q ss_pred hhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCcc
Q 048744 83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDY 118 (312)
Q Consensus 83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~ 118 (312)
+. =.++.|..-+.+.....-..++.+.-|||+.=.
T Consensus 249 l~-~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~ 283 (986)
T 2iw3_A 249 LS-IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVE 283 (986)
T ss_dssp HH-HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC
T ss_pred HH-HHHHHHHhhhccCcchhheeeEEEEcchhhhcC
Confidence 10 135567777887777788899999999998653
No 81
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=62.50 E-value=36 Score=31.00 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=52.3
Q ss_pred HHHhccC-CCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC
Q 048744 7 ELLGFLC-SPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ 74 (312)
Q Consensus 7 ELv~FL~-~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~ 74 (312)
.++.++. +.+|..+..++..++.+-.++.|++.+....+.+++.+.....+. +.+.--+.+.++|+|.
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv 220 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSV 220 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 4556665 357888999999999999999999988765446777777776655 5666677889999985
No 82
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=61.93 E-value=8.6 Score=41.03 Aligned_cols=108 Identities=17% Similarity=0.144 Sum_probs=77.6
Q ss_pred hHHHHHhccCC-CCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHH
Q 048744 4 ELEELLGFLCS-PSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGK 81 (312)
Q Consensus 4 ~l~ELv~FL~~-~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~ 81 (312)
-++.|+..|.+ ..=+.|..|+..+-.+..+. ...+...-+.+||.+-....|. +.+++.|..++..+|.--...+.
T Consensus 134 ~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~ 211 (986)
T 2iw3_A 134 LLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI 211 (986)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch
Confidence 36777888874 46788888888888887543 2334433346899999999999 78999999999888753211111
Q ss_pred hhhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCcc
Q 048744 82 MVQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDY 118 (312)
Q Consensus 82 l~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~ 118 (312)
..||+.+++.|.+|+. ...+...|+.-|-..+
T Consensus 212 ---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~ 243 (986)
T 2iw3_A 212 ---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAE 243 (986)
T ss_dssp ---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSC
T ss_pred ---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEee
Confidence 2789999999999965 5567788887776554
No 83
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=61.82 E-value=25 Score=34.58 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=48.6
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN 75 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d 75 (312)
+.+.+..- .+.+..|+.|.+.|--+-..-+.. .+.+|.+++.||.|. ..+++.|+..|..+|.+
T Consensus 31 y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l------~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~ 95 (507)
T 3u0r_A 31 YQVILDGV-KGGTKEKRLAAQFIPKFFKHFPEL------ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG 95 (507)
T ss_dssp HHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGG------HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhh------HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh
Confidence 33444432 346888999999888876664431 125799999999998 89999999999999987
No 84
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=58.53 E-value=56 Score=30.94 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=42.3
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhc
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNL 72 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNL 72 (312)
+-++++++|-++++.+||+-.++.|--.-.. ..+ +. ..+++.|..|+.|. +.+.|.|+.|..|+
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~e-l~---~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIE-LL---LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGG-GH---HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHH-HH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4478999999999999999999988433211 111 11 13566666667665 66677777666664
No 85
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=58.18 E-value=4.9 Score=32.17 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=23.5
Q ss_pred chHHHHHhccCCCCHHHHHHHHHHHHhc
Q 048744 3 NELEELLGFLCSPSPSVKKAAVDIVRGL 30 (312)
Q Consensus 3 ~~l~ELv~FL~~~~~~vR~~Al~~llgl 30 (312)
++-+.|..+|+|+|++||-.|..+++.+
T Consensus 57 d~R~aLl~Ll~H~n~~VRl~AA~~~L~~ 84 (123)
T 2i9c_A 57 DQRTALLSLFEYPNMQVRLQAAKLTLAV 84 (123)
T ss_dssp CGGGGGGGGGGSSCHHHHHHHHHTTTTT
T ss_pred cHHHHHHHHHhCCCccHHHHHHHHHHhh
Confidence 3455789999999999999999877765
No 86
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=56.51 E-value=36 Score=29.68 Aligned_cols=103 Identities=12% Similarity=-0.013 Sum_probs=54.4
Q ss_pred HHhccCCCCHHHHHHHHHHHHhcCCCcc---chhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcC---CChh-HH
Q 048744 8 LLGFLCSPSPSVKKAAVDIVRGLTGSED---GLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLS---QNSE-LA 79 (312)
Q Consensus 8 Lv~FL~~~~~~vR~~Al~~llgls~~~~---~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS---~d~~-~~ 79 (312)
|-+=|.|.+=..|..|++.|..+-.+.. .....+..-....+.++..+.|. ..+...|+.+|-.+. .... ..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 3455778899999999999876532211 11111110012456777888888 666666666654442 2111 11
Q ss_pred HHhhh--hhHHHHHHHH-HcCCCChhHHHHHHHH
Q 048744 80 GKMVQ--MGMIKTAMDL-LYKPDSSITRLLVMLL 110 (312)
Q Consensus 80 ~~l~~--~~~i~~lv~~-i~~~~~~~ad~a~mLL 110 (312)
..... ..+++.+++. +.+++....+.+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l 127 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCI 127 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 11111 2456777776 5677766555544443
No 87
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=56.38 E-value=1e+02 Score=26.85 Aligned_cols=201 Identities=14% Similarity=0.179 Sum_probs=115.9
Q ss_pred hcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhHHHHhhhh--------hHH------HHHHHHHcCCCChh-HH
Q 048744 42 KYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSELAGKMVQM--------GMI------KTAMDLLYKPDSSI-TR 104 (312)
Q Consensus 42 ~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~~~~l~~~--------~~i------~~lv~~i~~~~~~~-ad 104 (312)
+.+..+++.+..++.|+ =.++++|++.+.+++. .++..+.+++. ..| ...+-.+...++.. ..
T Consensus 28 ~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~ 107 (253)
T 2db0_A 28 KYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKS 107 (253)
T ss_dssp HHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHh
Confidence 34446899999999999 5789999999999995 46666665432 222 22233333333333 33
Q ss_pred HHHHHHHhhcCCccchH-HHhhhhhhh----hh--hhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcCChhhhhhhcc
Q 048744 105 LLVMLLVNLTQLDYGIS-SLLQVEDEQ----IQ--GLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISKKEAGRKILLD 177 (312)
Q Consensus 105 ~a~mLLsNLT~~~~~~~-~ll~~~~e~----~~--~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~~~~gR~~~l~ 177 (312)
..-|+.+|..-.+..++ .+--.+.+- +. +.....++-++.. ++.-|.+ .+|.=++.+.++.---+.
T Consensus 108 vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smlts------kd~~Dkl-~aLnFi~alGen~~~yv~ 180 (253)
T 2db0_A 108 MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSS------KNREDKL-TALNFIEAMGENSFKYVN 180 (253)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSC------SSHHHHH-HHHHHHHTCCTTTHHHHG
T ss_pred hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcC------CChHHHH-HHHHHHHHHhccCccccC
Confidence 55688899887764332 111111110 00 0011223333321 1245556 455556777666555555
Q ss_pred cccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhcccCCCCCChhhhccCcHHhhhhhc
Q 048744 178 PKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALR 257 (312)
Q Consensus 178 ~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPlaG~ee~~~ee~~~lp~~Lq~~l~ 257 (312)
| .+.+|...+..++.+-|..++.|+-|++--.+.-. .+.... +.
T Consensus 181 P---fLprL~aLL~D~deiVRaSaVEtL~~lA~~npklR-kii~~k--------------------------------l~ 224 (253)
T 2db0_A 181 P---FLPRIINLLHDGDEIVRASAVEALVHLATLNDKLR-KVVIKR--------------------------------LE 224 (253)
T ss_dssp G---GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHH-HHHHHH--------------------------------HH
T ss_pred c---chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHH-HHHHHH--------------------------------HH
Confidence 5 57788777777999999999999999987544432 222210 11
Q ss_pred cCCCCCCChHHHHHHHHHHHHHhcCHhHHH
Q 048744 258 IEREPVDDPEIRIQALESIYLITLQEAGLR 287 (312)
Q Consensus 258 ~~re~e~d~~Ir~~llE~Ll~L~~t~~gR~ 287 (312)
.=.+ .+..+.+...|+|..|+.-..|+.
T Consensus 225 e~~D--~S~lv~~~V~egL~rl~l~e~~~~ 252 (253)
T 2db0_A 225 ELND--TSSLVNKTVKEGISRLLLLEGHSS 252 (253)
T ss_dssp HCCC--SCHHHHHHHHHHHHHHHHC-----
T ss_pred HhcC--cHHHHHHHHHHHHHHHHHHhcccC
Confidence 1112 267888899999988887766653
No 88
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=52.12 E-value=13 Score=32.59 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=11.7
Q ss_pred HHHHhccCCCCHHHHHHHHHHHH
Q 048744 6 EELLGFLCSPSPSVKKAAVDIVR 28 (312)
Q Consensus 6 ~ELv~FL~~~~~~vR~~Al~~ll 28 (312)
++++.++.+.||.+|..++..|.
T Consensus 142 e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 142 ELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHGGGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHH
Confidence 34445555555555555555443
No 89
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=50.33 E-value=1.3e+02 Score=30.52 Aligned_cols=166 Identities=19% Similarity=0.162 Sum_probs=95.3
Q ss_pred ccCCC-CHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccCc-cchhhHHHHHHhcCCChhHHHHhhh-hhH
Q 048744 11 FLCSP-SPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSENK-EVSEPATEALVNLSQNSELAGKMVQ-MGM 87 (312)
Q Consensus 11 FL~~~-~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~~-~~~~~Al~~LiNLS~d~~~~~~l~~-~~~ 87 (312)
|.++. =.-||..|.+.|-.+ ..-+.. . .++..++..+.... .+.+-++..|=-+ .+.+.+ .++
T Consensus 235 YVSDqVVAPVRETaAQtLGaL-~hLp~e-----~--~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~V 300 (800)
T 3oc3_A 235 FVDDRTVAPVRDAAAYLLSRI-YPLIGP-----N--DIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGL 300 (800)
T ss_dssp CSSSSCBCHHHHHHHHHHHHH-TTTSCS-----C--CHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHH
T ss_pred cccCeeeeehHHHHHHHHHHH-HhCChh-----H--HHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHH
Confidence 45542 345788777776555 332211 1 34555555555554 4555666666666 111212 367
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchhhHHHHHHhhcC
Q 048744 88 IKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCRSSSEASDDPFEHVGSILVNISK 167 (312)
Q Consensus 88 i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~~~~~~~~~~~~~la~vl~NlS~ 167 (312)
++.++.-+.|++....-.|+..|.-+++. +....+ +..+-+++..-++= .++..-+-..|+.+-+
T Consensus 301 v~aVL~GL~D~DDDVRAVAAetLiPIA~p-~~l~~L------------L~iLWd~L~~LDDL--SASTgSVMdLLAkL~s 365 (800)
T 3oc3_A 301 CRKLVSLLSSPDEDIKLLSAELLCHFPIT-DSLDLV------------LEKCWKNIESEELI--SVSKTSNLSLLTKIYR 365 (800)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHTTSCCS-STHHHH------------HHHHHHHHHTCCSC--CTTHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCcccHHHHHHHHHhhhhcch-hhHHHH------------HHHHHHHhhhhccc--chhhHHHHHHHHHHHc
Confidence 88888888998888888888889888822 223222 23444444443221 1122222234444444
Q ss_pred ChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhh
Q 048744 168 KEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCC 209 (312)
Q Consensus 168 ~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNcc 209 (312)
.|. . ......++++|.|++.|..+--|..|..|+....
T Consensus 366 ~p~--~--a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 366 ENP--E--LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HCT--T--CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred CCc--c--cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 442 1 1111258899999999988888899999997765
No 90
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=48.15 E-value=16 Score=32.45 Aligned_cols=73 Identities=21% Similarity=0.202 Sum_probs=49.3
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCC-ChhHHHH
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQ-NSELAGK 81 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~-d~~~~~~ 81 (312)
++.+..+..++++.||+.|.+.+++.+.-. ......+.+++.|-.+..|. ..+.+--.-+|=.+|. +|+....
T Consensus 141 l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~----~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~ 215 (240)
T 3l9t_A 141 LPIIDEWLKSSNLHTRRAATEGLRIWTNRP----YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKI 215 (240)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHTCSGGGST----TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHhhHHHhccc----hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHH
Confidence 567788899999999999999998865321 11122224667777777777 5666666677777775 4544333
No 91
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=46.60 E-value=25 Score=31.31 Aligned_cols=160 Identities=13% Similarity=0.145 Sum_probs=78.5
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChhHHHHh
Q 048744 4 ELEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSELAGKM 82 (312)
Q Consensus 4 ~l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~~~~~l 82 (312)
-++++++|-++++.+||+--++.+--.-... ..+.. .+++.|..++.|. +.+.|.|+.|..+
T Consensus 54 ~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k---~~l~~---~~l~~L~~Ll~d~d~~V~K~~I~~~~~----------- 116 (257)
T 3gs3_A 54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVK---VELLP---HVINVVSMLLRDNSAQVIKRVIQACGS----------- 116 (257)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GGGHH---HHHHHHHHHTTCSCHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHH---HHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHH-----------
Confidence 4677888887888888888877764332111 11111 3455555555554 4444444444433
Q ss_pred hhhhHHHHHHHHHcCCCChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhh---hHHHHHHHHhcCCCCCCCCchhhHH
Q 048744 83 VQMGMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGL---YVMKLVRSFCRSSSEASDDPFEHVG 159 (312)
Q Consensus 83 ~~~~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~---~l~~Ll~~f~~~~~~~~~~~~~~la 159 (312)
+-+.++.++.+ ++...+..-.....++.-...+-.+++....+.+-. ++..++.+++.+........-|
T Consensus 117 ----iY~~~l~~i~~-~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d--- 188 (257)
T 3gs3_A 117 ----IYKNGLQYLCS-LMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGD--- 188 (257)
T ss_dssp ----HHHHHHHHHTT-SSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTC---
T ss_pred ----HHHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCC---
Confidence 34455666554 222223334445555544444444444322211100 2335555555543221100001
Q ss_pred HHHHhhcCChhhhhhhcccc------cchhhhhhhcccC
Q 048744 160 SILVNISKKEAGRKILLDPK------RGLLKQIVRQFDS 192 (312)
Q Consensus 160 ~vl~NlS~~~~gR~~~l~~~------~~~l~~ll~~~~~ 192 (312)
.|++.+|.+=.++ ++. .+++..|+-++.+
T Consensus 189 ---~SL~~Vp~~Hp~l-~~~~Le~Ea~~lL~~LL~~~~~ 223 (257)
T 3gs3_A 189 ---FSLADVPDHCTLF-RREKLQEEGNNILDILLQFHGT 223 (257)
T ss_dssp ---CCGGGSCSSCCSS-CHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---CCHHHCCCCCCcC-CHHHHHHHHHHHHHHHHHHHcC
Confidence 4788888775555 332 2567777776543
No 92
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=46.44 E-value=59 Score=30.49 Aligned_cols=96 Identities=11% Similarity=0.165 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChh---HHHHhhhh-h-H----
Q 048744 18 SVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSE---LAGKMVQM-G-M---- 87 (312)
Q Consensus 18 ~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~---~~~~l~~~-~-~---- 87 (312)
++....+..|-.+--+..|...+.+++ ..|..|+.++... +.+.+.|+..|.=+|-.+. .++.+++. . +
T Consensus 135 ~~q~~~l~CLkalmN~~~G~~~vl~~~-~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~ 213 (383)
T 3eg5_B 135 RNQHEIIRCLKAFMNNKFGIKTMLETE-EGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 213 (383)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTCS-SHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHcCh-HHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhC
Confidence 556666777777777788988888875 6899999998777 7888889988877665432 35555542 1 1
Q ss_pred ----HHHHHHHHcCCCChhHHHHHHHHHhhc
Q 048744 88 ----IKTAMDLLYKPDSSITRLLVMLLVNLT 114 (312)
Q Consensus 88 ----i~~lv~~i~~~~~~~ad~a~mLLsNLT 114 (312)
...+|+.+.+....---.+||.|-|-.
T Consensus 214 e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~l 244 (383)
T 3eg5_B 214 EVERFQPLLDGLKSGTSIALKVGCLQLINAL 244 (383)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 233555555543333335667777753
No 93
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=44.60 E-value=45 Score=31.09 Aligned_cols=65 Identities=17% Similarity=0.038 Sum_probs=49.2
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCC
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQN 75 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d 75 (312)
.+.+.+-|.|++|-||+.|+-...-+-...+. +.+ .++..+..++.|. +.+.-+|+.+|..++..
T Consensus 141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v~---~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 141 ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VVK---RWVNEAQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HHH---TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HHH---HHHHHHHHHhcCCCccHHHHHHHHHHHHHhh
Confidence 34566777899999999999887766544322 222 4678888888887 78888999999999873
No 94
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=43.45 E-value=1.3e+02 Score=29.51 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=56.7
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-cc---chhhHHHHHHhcCCChhHHH
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KE---VSEPATEALVNLSQNSELAG 80 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~---~~~~Al~~LiNLS~d~~~~~ 80 (312)
++.++..|.++++.+.+.|+..+. ....+. +|+.. .++.-|+.+.-+. .. +....=.++.+||.|+-++.
T Consensus 118 ve~i~~aL~S~~~~l~~~~ckVI~----~s~pk~-lfa~t-~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirr 191 (500)
T 3vld_A 118 AEDLVKALRSEIDPLKVAACRVIE----NSQPKG-LFATS-NIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRR 191 (500)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHH----TCSSGG-GGTTS-SHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHhc----ccCchh-HhccC-hHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHH
Confidence 678999999999999999999998 223333 45543 6888888887665 33 34444456667788888888
Q ss_pred HhhhhhHHHHHHH
Q 048744 81 KMVQMGMIKTAMD 93 (312)
Q Consensus 81 ~l~~~~~i~~lv~ 93 (312)
.|.+. +.+.+..
T Consensus 192 ril~n-nl~lL~~ 203 (500)
T 3vld_A 192 RLFDN-NLPYLVS 203 (500)
T ss_dssp HHHTT-THHHHHH
T ss_pred HHHHH-hHHHHHH
Confidence 88754 3344433
No 95
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=39.87 E-value=2.7e+02 Score=27.02 Aligned_cols=198 Identities=15% Similarity=0.169 Sum_probs=100.1
Q ss_pred HHHHHhccC-CCCHHHHHHHHHHHHhcCCCcc---chhhhhhcccchHHHHHHh-hccC-ccchhhHHHHHHhcC----C
Q 048744 5 LEELLGFLC-SPSPSVKKAAVDIVRGLTGSED---GLQSLSKYSKIALPSLARL-LSEN-KEVSEPATEALVNLS----Q 74 (312)
Q Consensus 5 l~ELv~FL~-~~~~~vR~~Al~~llgls~~~~---~~~~i~~~~~~~i~~L~~L-~~d~-~~~~~~Al~~LiNLS----~ 74 (312)
..-++.+|+ ..+.++.+..+..+-.+-..++ .+..+|...+...+.+... +..+ ......|..++.-++ .
T Consensus 79 ~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~~ 158 (480)
T 1ho8_A 79 LIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLH 158 (480)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTC
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCCc
Confidence 355778888 5799999999988877665544 4444544322333333332 2233 333333333322222 1
Q ss_pred ChhHHHHhhhhhHHHHHHHHHcCCC-ChhHHHHHHHHHhhcCCccchHHHhhhhhhhhhhhhHHHHHHHHhc---CCCC-
Q 048744 75 NSELAGKMVQMGMIKTAMDLLYKPD-SSITRLLVMLLVNLTQLDYGISSLLQVEDEQIQGLYVMKLVRSFCR---SSSE- 149 (312)
Q Consensus 75 d~~~~~~l~~~~~i~~lv~~i~~~~-~~~ad~a~mLLsNLT~~~~~~~~ll~~~~e~~~~~~l~~Ll~~f~~---~~~~- 149 (312)
+.+..+.+.+.. .+...++++. ....+.+.-.|+-|.+.++....+++.. +..++.+++.+.. |...
T Consensus 159 ~~~~l~~l~~~~---~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~-----~~~~~~l~~il~~~~~~~~~~ 230 (480)
T 1ho8_A 159 NVKLVEKLLKNN---NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHE-----KKFMPTLFKILQRATDSQLAT 230 (480)
T ss_dssp CHHHHHHHHHCH---HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTH-----HHHHHHHHHHHHHHHC-----
T ss_pred cHhHHHHHhhhH---HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcc-----cchhHHHHHHHHHhhcccccc
Confidence 222333332211 3445556643 3445568888888989887665555532 1235555543332 1110
Q ss_pred -----CCCC-----chhhHHHHHHhhcCChhhhhhhcccccchhhhhhhcc--cCCchhhHhhHHHHHHhhhccc
Q 048744 150 -----ASDD-----PFEHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQF--DSSNYLRKKGVSGTIRNCCFEA 212 (312)
Q Consensus 150 -----~~~~-----~~~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~--~~~s~iRR~gva~~ikNccF~~ 212 (312)
+... .|+ +..++==+|=.+++-+.|....-..+..|+... ..+-.+= |-+.+|+|||.=..
T Consensus 231 ~~~~~~~~~~~~Ql~Y~-~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvv-Rv~la~l~Nll~~~ 303 (480)
T 1ho8_A 231 RIVATNSNHLGIQLQYH-SLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVS-RLCISIILQCCSTR 303 (480)
T ss_dssp --------CCHHHHHHH-HHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHH-HHHHHHHHHTTSSS
T ss_pred ccccccCCCccHHHHHH-HHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhH-HHHHHHHHHHhccc
Confidence 0111 133 335666688888877777654311123333322 1123333 34678899988654
No 96
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=37.38 E-value=3.5e+02 Score=27.85 Aligned_cols=53 Identities=19% Similarity=0.185 Sum_probs=36.8
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCCcc---------chhhhhhcccchHHHHHHhhcc
Q 048744 5 LEELLGFLCSPSPSVKKAAVDIVRGLTGSED---------GLQSLSKYSKIALPSLARLLSE 57 (312)
Q Consensus 5 l~ELv~FL~~~~~~vR~~Al~~llgls~~~~---------~~~~i~~~~~~~i~~L~~L~~d 57 (312)
++-++..|.++++.||..|...+-.+....+ .+..+...-+.++..|..++..
T Consensus 498 l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 498 MPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILK 559 (960)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHh
Confidence 5668888898899999999999998765321 2333433333567777777765
No 97
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=36.95 E-value=98 Score=28.03 Aligned_cols=120 Identities=13% Similarity=0.092 Sum_probs=76.2
Q ss_pred hhHHHHHHhhcCChhhhhhhcccccchhhhhhhcccCCchhhHhhHHHHHHhhhccchhhhHHHhhhccChhhhhhhccc
Q 048744 156 EHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVA 235 (312)
Q Consensus 156 ~~la~vl~NlS~~~~gR~~~l~~~~~~l~~ll~~~~~~s~iRR~gva~~ikNccF~~~~H~~~ll~~~~~~lp~lLlPla 235 (312)
--..-+++|+=..+.||++++.....++..+......++..-|-.++..+-|.+.-.... .
T Consensus 166 ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~-------~------------ 226 (304)
T 3ebb_A 166 LLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD-------H------------ 226 (304)
T ss_dssp HHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS-------C------------
T ss_pred HHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc-------C------------
Confidence 344688999999999999999754445555555444567778889999999988531111 0
Q ss_pred CCCCCChhhhccCcHHhhhhhccCCCCCCChHHHHHHHHHHHHHhcC-HhHHHHHHhCCcchhcccccc
Q 048744 236 GNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQ-EAGLRAFWSVNGPRLVHGSGT 303 (312)
Q Consensus 236 G~ee~~~ee~~~lp~~Lq~~l~~~re~e~d~~Ir~~llE~Ll~L~~t-~~gR~~lr~~~vy~vlr~~~~ 303 (312)
+.|+...+-..+.-.+. .++|++..-.++-||-.|... ..-++..+..|+-.+++....
T Consensus 227 -----~~~~~~~ll~~l~~il~----~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~ 286 (304)
T 3ebb_A 227 -----NIEGKAQCLSLISTILE----VVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSS 286 (304)
T ss_dssp -----CHHHHHHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGG
T ss_pred -----CchHHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHh
Confidence 11222212222211122 234889989999999887754 334567788888887766543
No 98
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=30.59 E-value=1.3e+02 Score=32.01 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=18.8
Q ss_pred chHHHHHhccC-CCCHHHHHHHHHHHH
Q 048744 3 NELEELLGFLC-SPSPSVKKAAVDIVR 28 (312)
Q Consensus 3 ~~l~ELv~FL~-~~~~~vR~~Al~~ll 28 (312)
..++.|+.++. +...+||+.|+-.|-
T Consensus 577 ~aIq~LL~~~~~d~~d~VRraAViaLG 603 (963)
T 4ady_A 577 SAVKRLLHVAVSDSNDDVRRAAVIALG 603 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 35677777776 678888888777664
No 99
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=30.43 E-value=1.4e+02 Score=31.75 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=27.0
Q ss_pred hHHHHHHhh-ccC-ccchhhHHHHHHhcC-CChhHHHHhhhhhHHHHHHHHHcC-CCChhHHHHHHHHHhhcC
Q 048744 47 ALPSLARLL-SEN-KEVSEPATEALVNLS-QNSELAGKMVQMGMIKTAMDLLYK-PDSSITRLLVMLLVNLTQ 115 (312)
Q Consensus 47 ~i~~L~~L~-~d~-~~~~~~Al~~LiNLS-~d~~~~~~l~~~~~i~~lv~~i~~-~~~~~ad~a~mLLsNLT~ 115 (312)
+|+.|+..+ .|. ..+++.|+.+|=.+. .++ ..+..++..+.+ .++...--+++.|..+..
T Consensus 578 aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 578 AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 344444443 333 345555655554432 222 233444444333 333344455666666644
No 100
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=28.90 E-value=1e+02 Score=31.80 Aligned_cols=78 Identities=14% Similarity=0.109 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHhcCCC-ccchhhhhhcccchHHHHHHhhccCccchhhHHHHHHhcCCChhHHHHhhhh--hHHHH
Q 048744 14 SPSPSVKKAAVDIVRGLTGS-EDGLQSLSKYSKIALPSLARLLSENKEVSEPATEALVNLSQNSELAGKMVQM--GMIKT 90 (312)
Q Consensus 14 ~~~~~vR~~Al~~llgls~~-~~~~~~i~~~~~~~i~~L~~L~~d~~~~~~~Al~~LiNLS~d~~~~~~l~~~--~~i~~ 90 (312)
+++|-||..|+..+-.++.- .++.+.+ ..+++.|+..+ + +.+...|..++.+++. ...+.|... .++..
T Consensus 517 d~~~~vr~~a~~~l~~~~~~l~~~~~~l----~~vl~~l~~~l-~-~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~ 588 (971)
T 2x1g_F 517 KLNVKLLGTALETMGSYCNWLMENPAYI----PPAINLLVRGL-N-SSMSAQATLGLKELCR--DCQLQLKPYADPLLNA 588 (971)
T ss_dssp TSCHHHHHHHHHHHHHTHHHHC----CH----HHHHHHHHHHH-H-SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhcCHHHH----HHHHHHHHHHh-C-hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHH
Confidence 46899999999999888733 1111111 13667777766 4 7789999999999983 334444432 55666
Q ss_pred HHHHHcCCC
Q 048744 91 AMDLLYKPD 99 (312)
Q Consensus 91 lv~~i~~~~ 99 (312)
+...+.++.
T Consensus 589 l~~~l~~~~ 597 (971)
T 2x1g_F 589 CHASLNTGR 597 (971)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHcCCC
Confidence 666666643
No 101
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=27.72 E-value=1.8e+02 Score=24.84 Aligned_cols=66 Identities=9% Similarity=0.151 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChh--H-HHHhh
Q 048744 17 PSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSE--L-AGKMV 83 (312)
Q Consensus 17 ~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~--~-~~~l~ 83 (312)
.+.....+.-|-.+--+..|.+.+.+++ ..+..|+.++... +.+.+.|+..|.=+|-.+. . ++.++
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~-~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL 137 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETE-EGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVL 137 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSS-SHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCc-HHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHH
Confidence 3555666677777777788888887765 5788888888666 7777888777766664332 4 55544
No 102
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=26.00 E-value=85 Score=26.98 Aligned_cols=68 Identities=13% Similarity=0.006 Sum_probs=51.1
Q ss_pred chhhHHHHHHhcCCChhHHHHhhhh-hHHHHHHHHHcCCCChhHHHHHHHHHhhcCCcc--c-hHHHhhhhh
Q 048744 61 VSEPATEALVNLSQNSELAGKMVQM-GMIKTAMDLLYKPDSSITRLLVMLLVNLTQLDY--G-ISSLLQVED 128 (312)
Q Consensus 61 ~~~~Al~~LiNLS~d~~~~~~l~~~-~~i~~lv~~i~~~~~~~ad~a~mLLsNLT~~~~--~-~~~ll~~~~ 128 (312)
....++.||=-+.-.....+.+++. +++..++..+..+.......+..||+-++..+. | ...+++...
T Consensus 70 ~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~ 141 (233)
T 2f31_A 70 NQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMT 141 (233)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Confidence 3556777777777777778888776 788888887776777777788889988888765 7 777777643
No 103
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=25.92 E-value=61 Score=25.86 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=35.0
Q ss_pred chHHHHHHhhccC-ccchhhHHHHHHhcCCC--hhHHHHhhhhhHHHHHHHHHcCCCChhHHHHHHHHH
Q 048744 46 IALPSLARLLSEN-KEVSEPATEALVNLSQN--SELAGKMVQMGMIKTAMDLLYKPDSSITRLLVMLLV 111 (312)
Q Consensus 46 ~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d--~~~~~~l~~~~~i~~lv~~i~~~~~~~ad~a~mLLs 111 (312)
.++++|++-+... +.++..|++.|=-+..+ ..++..+.+.+|+..++..+....+...+.+..++-
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~ 110 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV 110 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 3566665555444 55566665544444322 455666666677777666664333344444444443
No 104
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=25.03 E-value=2.5e+02 Score=26.02 Aligned_cols=95 Identities=12% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhccC-ccchhhHHHHHHhcCCChh--H-HHHhhhh-hHHHH-
Q 048744 17 PSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLSEN-KEVSEPATEALVNLSQNSE--L-AGKMVQM-GMIKT- 90 (312)
Q Consensus 17 ~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d~~--~-~~~l~~~-~~i~~- 90 (312)
.+.....+..|-.+--+..|.+.+.+++ ..+..|+.++... +.+.+.|+..|.-+|-.+. . ++.+++. .-...
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~-~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETE-EGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSS-SHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCc-HHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Q ss_pred --------HHHHHcCCCChhHHHHHHHHHh
Q 048744 91 --------AMDLLYKPDSSITRLLVMLLVN 112 (312)
Q Consensus 91 --------lv~~i~~~~~~~ad~a~mLLsN 112 (312)
+|+.+.+....---.+||.+-|
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN 180 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLIN 180 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHH
No 105
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=23.78 E-value=1e+02 Score=24.90 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=45.8
Q ss_pred chHHHHHHhhccC-ccchhhHHHHHHhcCC--ChhHHHHhhhhhHHHHHHHHHcCC------CChhHHHHHHHHHhhc
Q 048744 46 IALPSLARLLSEN-KEVSEPATEALVNLSQ--NSELAGKMVQMGMIKTAMDLLYKP------DSSITRLLVMLLVNLT 114 (312)
Q Consensus 46 ~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~--d~~~~~~l~~~~~i~~lv~~i~~~------~~~~ad~a~mLLsNLT 114 (312)
.++++|++-+... +.++..|++.|=-+.. ...++.++.+..|+..++..+.++ .....+.+..++-..+
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 4677776655555 7777777776655543 356678888889999999888753 2345556666665554
No 106
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=23.60 E-value=2.1e+02 Score=27.89 Aligned_cols=102 Identities=13% Similarity=0.134 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHhcCCCccchhhhhhcccchHHHHHHhhc-----------------c-CccchhhHHHHHHhcCCChh
Q 048744 16 SPSVKKAAVDIVRGLTGSEDGLQSLSKYSKIALPSLARLLS-----------------E-NKEVSEPATEALVNLSQNSE 77 (312)
Q Consensus 16 ~~~vR~~Al~~llgls~~~~~~~~i~~~~~~~i~~L~~L~~-----------------d-~~~~~~~Al~~LiNLS~d~~ 77 (312)
+.+.+-.|+..+..+...++.|..+++..+.+++.++..+. . +.+..=.++-|+-=||=++.
T Consensus 181 ~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~ 260 (480)
T 1ho8_A 181 QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV 260 (480)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH
T ss_pred CCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHH
Confidence 34556678888888888888888877654345665543221 1 12335667888888999999
Q ss_pred HHHHhhhhhHH--HHHHHHHcC-CCChhHHHHHHHHHhhcCCc
Q 048744 78 LAGKMVQMGMI--KTAMDLLYK-PDSSITRLLVMLLVNLTQLD 117 (312)
Q Consensus 78 ~~~~l~~~~~i--~~lv~~i~~-~~~~~ad~a~mLLsNLT~~~ 117 (312)
+++.+.+.+.+ ..+++.++. ++++....+.+.|-|+....
T Consensus 261 ~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~ 303 (480)
T 1ho8_A 261 FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTR 303 (480)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhccc
Confidence 99998876543 566776654 77899999999999998765
No 107
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=20.28 E-value=87 Score=20.53 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=18.2
Q ss_pred CCCCChhhhccCcHHhhh-hhc-cCCC
Q 048744 237 NKVYKEEDTSKIPLELAS-ALR-IERE 261 (312)
Q Consensus 237 ~ee~~~ee~~~lp~~Lq~-~l~-~~re 261 (312)
|+..|-|=-..||.++|. .++ +.|+
T Consensus 13 P~~VD~eVF~~LP~dIQ~Ells~~~~e 39 (48)
T 2kwv_A 13 PEGVDQEVFKQLPADIQEEILSGKSRE 39 (48)
T ss_dssp CTTCCGGGTTTSCHHHHHHHTTCCCSC
T ss_pred CCCCCHHHHHHCcHHHHHHHHhcchHH
Confidence 677787777889999997 443 4444
No 108
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=20.24 E-value=1.3e+02 Score=24.82 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=44.5
Q ss_pred chHHHHHHhhccC-ccchhhHHHHHHhcCCC--hhHHHHhhhhhHHHHHHHHHcCC------CChhHHHHHHHHHhhc
Q 048744 46 IALPSLARLLSEN-KEVSEPATEALVNLSQN--SELAGKMVQMGMIKTAMDLLYKP------DSSITRLLVMLLVNLT 114 (312)
Q Consensus 46 ~~i~~L~~L~~d~-~~~~~~Al~~LiNLS~d--~~~~~~l~~~~~i~~lv~~i~~~------~~~~ad~a~mLLsNLT 114 (312)
.++++|++-+... +.++..|++.|=-+..+ ..++.++.+.+|+..++..+... .....+.+..++-.-+
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3667776666555 77777777776666554 46777788888999888887531 1234455555555444
Done!